Query 001889
Match_columns 1000
No_of_seqs 829 out of 5157
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 03:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 7.6E-48 2.6E-52 378.4 12.4 170 9-184 4-174 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 7.6E-48 2.6E-52 383.5 11.4 171 8-181 30-200 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 2.2E-38 7.7E-43 379.2 18.3 289 192-490 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 9.7E-34 3.3E-38 374.0 19.8 294 184-489 119-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 5.6E-33 1.9E-37 335.1 12.3 268 190-482 129-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 1.2E-31 3.9E-36 325.6 19.1 288 185-485 120-448 (591)
7 3h16_A TIR protein; bacteria T 100.0 1.7E-30 5.7E-35 255.5 1.3 121 9-132 16-136 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 1.4E-25 4.9E-30 216.6 1.3 136 7-149 4-145 (146)
9 4fcg_A Uncharacterized protein 99.9 1.6E-22 5.4E-27 226.1 15.7 205 512-732 83-297 (328)
10 4fcg_A Uncharacterized protein 99.8 2.7E-20 9.1E-25 208.0 17.9 204 533-753 80-297 (328)
11 1fyx_A TOLL-like receptor 2; b 99.8 6.3E-22 2.2E-26 192.6 2.3 103 10-116 2-109 (149)
12 2js7_A Myeloid differentiation 99.8 1.4E-21 4.7E-26 192.1 3.7 103 9-114 12-117 (160)
13 2j67_A TOLL like receptor 10; 99.8 1.6E-21 5.5E-26 194.5 3.7 104 8-114 30-136 (178)
14 1ogq_A PGIP-2, polygalacturona 99.8 4E-20 1.4E-24 205.3 13.6 228 511-752 51-287 (313)
15 1ogq_A PGIP-2, polygalacturona 99.8 2.4E-20 8.2E-25 207.1 11.7 225 509-748 75-306 (313)
16 1t3g_A X-linked interleukin-1 99.8 9.7E-21 3.3E-25 185.8 6.4 103 12-115 1-115 (159)
17 3rgz_A Protein brassinosteroid 99.8 4.6E-19 1.6E-23 221.2 19.4 243 509-752 417-723 (768)
18 4eco_A Uncharacterized protein 99.8 1.6E-19 5.6E-24 220.2 11.8 208 522-744 194-444 (636)
19 4ecn_A Leucine-rich repeat pro 99.8 4.3E-19 1.5E-23 220.6 14.9 212 522-750 436-689 (876)
20 2z66_A Variable lymphocyte rec 99.8 1.3E-18 4.6E-23 192.3 17.0 175 534-722 28-209 (306)
21 4ecn_A Leucine-rich repeat pro 99.8 7.2E-19 2.5E-23 218.7 15.3 222 512-750 325-661 (876)
22 1ozn_A Reticulon 4 receptor; N 99.8 4.3E-18 1.5E-22 186.2 19.7 214 513-744 14-236 (285)
23 4eco_A Uncharacterized protein 99.8 5E-19 1.7E-23 215.9 13.2 224 511-750 82-419 (636)
24 3o6n_A APL1; leucine-rich repe 99.8 5.1E-18 1.7E-22 194.5 20.4 234 510-750 69-334 (390)
25 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-17 4.1E-22 182.6 22.2 201 510-724 32-237 (285)
26 3oja_B Anopheles plasmodium-re 99.8 4.8E-18 1.6E-22 205.9 20.4 229 510-744 75-335 (597)
27 3rgz_A Protein brassinosteroid 99.8 3E-18 1E-22 213.9 18.7 229 510-751 394-698 (768)
28 3zyi_A Leucine-rich repeat-con 99.8 1.4E-17 4.7E-22 194.9 21.7 174 534-722 75-252 (452)
29 4fmz_A Internalin; leucine ric 99.8 1.6E-17 5.6E-22 187.0 21.0 209 509-743 65-275 (347)
30 1xku_A Decorin; proteoglycan, 99.8 2.4E-17 8E-22 184.4 20.9 213 511-744 53-274 (330)
31 3o6n_A APL1; leucine-rich repe 99.8 1.4E-17 4.7E-22 190.9 19.1 235 510-751 45-312 (390)
32 2xwt_C Thyrotropin receptor; s 99.7 9.6E-18 3.3E-22 178.4 16.3 207 520-746 20-239 (239)
33 1xku_A Decorin; proteoglycan, 99.7 2.8E-17 9.7E-22 183.7 20.5 219 508-744 74-304 (330)
34 2ft3_A Biglycan; proteoglycan, 99.7 3.7E-17 1.3E-21 183.0 20.7 227 511-744 55-305 (332)
35 3zyj_A Leucine-rich repeat-con 99.7 4.5E-17 1.6E-21 189.7 21.9 192 514-722 68-265 (440)
36 3oja_B Anopheles plasmodium-re 99.7 2E-17 6.9E-22 200.4 19.4 233 510-751 51-318 (597)
37 2o6q_A Variable lymphocyte rec 99.7 8.4E-17 2.9E-21 174.4 21.8 205 501-723 7-216 (270)
38 3zyj_A Leucine-rich repeat-con 99.7 4.9E-17 1.7E-21 189.5 20.6 201 508-723 86-290 (440)
39 3v47_A TOLL-like receptor 5B a 99.7 4.9E-17 1.7E-21 190.3 20.4 83 660-743 295-381 (455)
40 3vq2_A TLR4, TOLL-like recepto 99.7 1.7E-17 5.7E-22 201.7 16.7 221 511-750 308-537 (606)
41 2ft3_A Biglycan; proteoglycan, 99.7 6.7E-17 2.3E-21 180.9 19.9 223 512-744 35-275 (332)
42 3v47_A TOLL-like receptor 5B a 99.7 4.9E-17 1.7E-21 190.3 19.2 90 658-749 317-411 (455)
43 3zyi_A Leucine-rich repeat-con 99.7 5.7E-17 1.9E-21 189.6 19.7 216 511-744 76-301 (452)
44 4fmz_A Internalin; leucine ric 99.7 8.9E-17 3E-21 181.0 20.4 211 508-744 86-298 (347)
45 2z66_A Variable lymphocyte rec 99.7 4.4E-17 1.5E-21 180.1 17.3 220 510-744 28-259 (306)
46 1h6u_A Internalin H; cell adhe 99.7 4.5E-17 1.5E-21 180.1 17.3 187 511-723 42-228 (308)
47 1p9a_G Platelet glycoprotein I 99.7 1.8E-16 6.3E-21 173.5 21.0 197 530-744 6-206 (290)
48 2z7x_B TOLL-like receptor 1, v 99.7 8E-17 2.7E-21 191.9 19.5 88 661-749 321-415 (520)
49 2z62_A TOLL-like receptor 4, v 99.7 8.2E-17 2.8E-21 175.1 17.7 208 522-744 18-235 (276)
50 1wwl_A Monocyte differentiatio 99.7 1.5E-17 5.1E-22 184.4 11.9 197 532-743 93-306 (312)
51 3bz5_A Internalin-J, INLJ; leu 99.7 9.4E-17 3.2E-21 187.5 19.1 208 510-750 85-303 (457)
52 3t6q_A CD180 antigen; protein- 99.7 1.4E-16 4.8E-21 193.6 21.3 221 512-744 256-487 (606)
53 1h6u_A Internalin H; cell adhe 99.7 6.9E-17 2.4E-21 178.7 16.8 188 532-744 39-228 (308)
54 2id5_A Lingo-1, leucine rich r 99.7 1.1E-16 3.9E-21 188.4 19.7 239 509-750 55-312 (477)
55 3g06_A SSPH2 (leucine-rich rep 99.7 4.3E-16 1.5E-20 187.5 24.4 209 512-751 63-278 (622)
56 2z62_A TOLL-like receptor 4, v 99.7 1.2E-16 4E-21 173.9 17.1 199 511-724 29-236 (276)
57 1p9a_G Platelet glycoprotein I 99.7 3.3E-16 1.1E-20 171.5 20.2 195 510-724 10-207 (290)
58 3bz5_A Internalin-J, INLJ; leu 99.7 4.7E-16 1.6E-20 181.5 22.5 182 509-722 41-222 (457)
59 3o53_A Protein LRIM1, AGAP0063 99.7 6.5E-17 2.2E-21 179.7 14.5 212 510-746 34-250 (317)
60 2id5_A Lingo-1, leucine rich r 99.7 1.4E-16 4.7E-21 187.8 18.1 230 511-743 33-282 (477)
61 3t6q_A CD180 antigen; protein- 99.7 3.6E-16 1.2E-20 189.9 21.9 223 509-744 277-511 (606)
62 1wwl_A Monocyte differentiatio 99.7 2.7E-17 9.1E-22 182.4 10.7 226 509-751 42-291 (312)
63 2z80_A TOLL-like receptor 2, v 99.7 2.6E-17 9E-22 185.9 10.7 187 522-723 42-233 (353)
64 2z80_A TOLL-like receptor 2, v 99.7 1.6E-17 5.4E-22 187.7 8.4 216 512-745 54-313 (353)
65 3oja_A Leucine-rich immune mol 99.7 8.3E-17 2.8E-21 189.6 14.7 211 511-746 35-250 (487)
66 2o6q_A Variable lymphocyte rec 99.7 1.3E-15 4.3E-20 165.2 22.6 192 534-744 16-216 (270)
67 3vq2_A TLR4, TOLL-like recepto 99.7 1.6E-16 5.3E-21 193.2 16.9 223 508-746 326-558 (606)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 5E-16 1.7E-20 186.9 20.2 84 661-745 350-440 (562)
69 2z7x_B TOLL-like receptor 1, v 99.7 6.4E-16 2.2E-20 184.1 20.8 126 510-640 21-150 (520)
70 3rfs_A Internalin B, repeat mo 99.7 9.7E-16 3.3E-20 166.2 19.4 200 531-750 38-239 (272)
71 3j0a_A TOLL-like receptor 5; m 99.7 6.8E-16 2.3E-20 194.6 19.9 112 509-620 47-163 (844)
72 2xwt_C Thyrotropin receptor; s 99.7 3.7E-16 1.3E-20 166.1 14.4 195 511-724 32-238 (239)
73 2z81_A CD282 antigen, TOLL-lik 99.7 3.2E-16 1.1E-20 188.0 15.6 87 661-750 331-426 (549)
74 1ziw_A TOLL-like receptor 3; i 99.7 1.2E-15 4.1E-20 188.1 20.4 225 513-744 384-620 (680)
75 3rfs_A Internalin B, repeat mo 99.7 9.9E-16 3.4E-20 166.2 16.5 201 510-732 41-242 (272)
76 1o6v_A Internalin A; bacterial 99.7 1.8E-15 6E-20 177.6 19.8 137 601-744 173-320 (466)
77 3m19_A Variable lymphocyte rec 99.7 2.3E-15 7.9E-20 161.2 19.0 174 534-723 14-190 (251)
78 4glp_A Monocyte differentiatio 99.6 3E-16 1E-20 173.7 12.0 198 533-744 90-305 (310)
79 2z63_A TOLL-like receptor 4, v 99.6 8.2E-16 2.8E-20 185.3 16.8 215 510-743 282-504 (570)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3E-15 1E-19 180.1 21.2 126 510-640 52-181 (562)
81 3o53_A Protein LRIM1, AGAP0063 99.6 6.2E-16 2.1E-20 171.8 13.7 214 508-746 56-275 (317)
82 1o6v_A Internalin A; bacterial 99.6 2.6E-15 9E-20 176.2 19.6 190 530-744 173-364 (466)
83 3g06_A SSPH2 (leucine-rich rep 99.6 3.6E-15 1.2E-19 179.5 20.8 208 508-745 79-296 (622)
84 1h6t_A Internalin B; cell adhe 99.6 1.2E-15 4.1E-20 167.2 15.1 169 531-723 43-211 (291)
85 4glp_A Monocyte differentiatio 99.6 8.5E-16 2.9E-20 170.1 13.3 195 512-723 93-305 (310)
86 2ast_B S-phase kinase-associat 99.6 5.3E-17 1.8E-21 181.9 3.1 217 514-743 51-282 (336)
87 1ziw_A TOLL-like receptor 3; i 99.6 2.6E-15 9E-20 185.0 18.2 235 509-744 48-340 (680)
88 1jl5_A Outer protein YOPM; leu 99.6 1.4E-15 4.9E-20 177.3 14.9 206 512-751 13-232 (454)
89 4g8a_A TOLL-like receptor 4; l 99.6 8E-15 2.7E-19 178.8 21.5 80 664-744 469-553 (635)
90 3j0a_A TOLL-like receptor 5; m 99.6 9.8E-15 3.4E-19 184.0 22.5 235 508-743 22-348 (844)
91 1jl5_A Outer protein YOPM; leu 99.6 1.3E-14 4.6E-19 169.0 21.8 196 511-743 92-287 (454)
92 4ay9_X Follicle-stimulating ho 99.6 4.9E-15 1.7E-19 167.0 17.4 225 514-755 13-245 (350)
93 3cvr_A Invasion plasmid antige 99.6 4.1E-15 1.4E-19 176.8 17.3 181 511-729 60-247 (571)
94 2ast_B S-phase kinase-associat 99.6 6.9E-17 2.4E-21 180.9 1.8 227 512-750 72-309 (336)
95 2z81_A CD282 antigen, TOLL-lik 99.6 1.9E-15 6.6E-20 181.2 14.1 188 522-723 16-207 (549)
96 2z63_A TOLL-like receptor 4, v 99.6 3.1E-15 1.1E-19 180.2 15.8 127 512-639 30-160 (570)
97 3oja_A Leucine-rich immune mol 99.6 2E-15 6.9E-20 177.8 13.7 195 532-751 32-231 (487)
98 1m9s_A Internalin B; cell inva 99.6 3.9E-15 1.3E-19 179.0 16.3 170 531-724 40-209 (605)
99 3m19_A Variable lymphocyte rec 99.6 2.2E-14 7.6E-19 153.5 18.9 175 512-703 16-193 (251)
100 1h6t_A Internalin B; cell adhe 99.6 6E-15 2.1E-19 161.6 12.9 186 534-744 24-211 (291)
101 1xeu_A Internalin C; cellular 99.6 5.1E-15 1.7E-19 159.6 10.6 166 533-723 18-183 (263)
102 2qen_A Walker-type ATPase; unk 99.6 3.7E-14 1.3E-18 159.5 17.7 278 182-482 5-348 (350)
103 2ca6_A RAN GTPase-activating p 99.6 4E-16 1.4E-20 178.4 1.4 65 659-723 211-285 (386)
104 1m9s_A Internalin B; cell inva 99.6 5.4E-15 1.8E-19 177.8 11.2 187 533-744 20-208 (605)
105 3cvr_A Invasion plasmid antige 99.6 5.3E-14 1.8E-18 167.3 19.0 177 534-748 59-245 (571)
106 4ezg_A Putative uncharacterize 99.5 1.3E-14 4.5E-19 149.1 11.6 106 531-639 41-147 (197)
107 2fna_A Conserved hypothetical 99.5 5.8E-14 2E-18 158.3 16.3 278 182-482 6-356 (357)
108 1dce_A Protein (RAB geranylger 99.5 1.5E-16 5.1E-21 190.1 -5.9 180 531-729 346-549 (567)
109 4ezg_A Putative uncharacterize 99.5 2.8E-14 9.5E-19 146.7 11.8 151 553-723 40-192 (197)
110 2ca6_A RAN GTPase-activating p 99.5 8.7E-16 3E-20 175.6 -0.4 215 522-744 20-285 (386)
111 4ay9_X Follicle-stimulating ho 99.5 1.4E-13 4.9E-18 154.9 16.9 215 510-742 30-255 (350)
112 1xeu_A Internalin C; cellular 99.5 7.3E-14 2.5E-18 150.5 11.7 167 514-706 23-189 (263)
113 2o6s_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 141.2 14.1 169 538-729 11-182 (208)
114 1dce_A Protein (RAB geranylger 99.5 1.3E-15 4.4E-20 182.0 -3.3 191 511-719 350-567 (567)
115 3e6j_A Variable lymphocyte rec 99.5 6.8E-13 2.3E-17 139.8 16.3 147 537-723 22-170 (229)
116 2v9t_B SLIT homolog 2 protein 99.5 7.6E-13 2.6E-17 138.5 16.5 149 537-701 14-164 (220)
117 3goz_A Leucine-rich repeat-con 99.4 1E-14 3.5E-19 165.2 1.6 219 516-744 4-264 (362)
118 2o6s_A Variable lymphocyte rec 99.4 4.1E-13 1.4E-17 139.2 13.1 175 514-713 11-190 (208)
119 2xot_A Amphoterin-induced prot 99.4 4.4E-13 1.5E-17 151.6 14.4 168 537-722 21-199 (361)
120 4g8a_A TOLL-like receptor 4; l 99.4 4.9E-13 1.7E-17 162.9 15.3 186 522-723 42-235 (635)
121 1w5s_A Origin recognition comp 99.4 6E-13 2E-17 153.3 13.1 275 187-467 20-371 (412)
122 2v70_A SLIT-2, SLIT homolog 2 99.4 2.2E-12 7.6E-17 134.9 16.2 149 537-702 14-166 (220)
123 2v70_A SLIT-2, SLIT homolog 2 99.4 3.5E-12 1.2E-16 133.4 15.4 147 560-723 14-164 (220)
124 2xot_A Amphoterin-induced prot 99.4 1.2E-12 4.1E-17 148.0 12.3 174 513-702 21-202 (361)
125 2ell_A Acidic leucine-rich nuc 99.4 1.8E-12 6.3E-17 129.3 11.0 137 533-707 23-165 (168)
126 3goz_A Leucine-rich repeat-con 99.4 5.7E-14 1.9E-18 159.0 -0.8 225 510-744 22-295 (362)
127 2ell_A Acidic leucine-rich nuc 99.4 2.1E-12 7.1E-17 128.9 10.7 134 557-729 24-163 (168)
128 2v9t_B SLIT homolog 2 protein 99.3 7.1E-12 2.4E-16 131.1 15.1 149 513-677 14-165 (220)
129 1z7x_W Ribonuclease inhibitor; 99.3 6.6E-14 2.3E-18 163.9 -0.4 202 535-744 86-324 (461)
130 2qby_B CDC6 homolog 3, cell di 99.3 2.3E-11 7.8E-16 138.6 20.6 266 188-467 19-339 (384)
131 3e6j_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 130.5 16.1 122 513-639 22-146 (229)
132 1z7x_W Ribonuclease inhibitor; 99.3 4.7E-14 1.6E-18 165.1 -2.3 224 512-744 144-409 (461)
133 4b8c_D Glucose-repressible alc 99.3 3.2E-13 1.1E-17 166.5 4.1 153 548-722 215-369 (727)
134 2qby_A CDC6 homolog 1, cell di 99.3 5.5E-11 1.9E-15 135.3 19.3 274 187-467 18-348 (386)
135 4b8c_D Glucose-repressible alc 99.3 8.5E-13 2.9E-17 162.6 3.9 113 574-702 217-329 (727)
136 2je0_A Acidic leucine-rich nuc 99.3 2.4E-12 8.2E-17 125.6 5.7 126 582-720 18-148 (149)
137 3ogk_B Coronatine-insensitive 99.3 7.7E-13 2.6E-17 160.0 1.9 222 510-742 112-351 (592)
138 2je0_A Acidic leucine-rich nuc 99.2 7.4E-12 2.5E-16 122.1 7.1 103 534-638 17-123 (149)
139 2p1m_B Transport inhibitor res 99.2 5.3E-13 1.8E-17 161.5 -2.7 195 511-719 131-345 (594)
140 2v1u_A Cell division control p 99.2 1.9E-10 6.4E-15 131.0 18.6 269 188-467 18-351 (387)
141 3ogk_B Coronatine-insensitive 99.2 1.4E-12 5E-17 157.6 0.9 218 510-741 164-411 (592)
142 1w8a_A SLIT protein; signaling 99.2 7.9E-11 2.7E-15 120.2 12.9 127 537-702 11-139 (192)
143 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5.1E-16 123.7 7.0 129 553-722 15-150 (176)
144 1njg_A DNA polymerase III subu 99.2 1.9E-10 6.4E-15 121.6 14.2 193 187-383 21-231 (250)
145 1a9n_A U2A', U2A'; complex (nu 99.2 4.5E-11 1.5E-15 120.2 8.3 106 530-639 15-124 (176)
146 2wfh_A SLIT homolog 2 protein 99.1 3E-10 1E-14 115.9 14.4 124 584-723 13-137 (193)
147 2p1m_B Transport inhibitor res 99.1 2.4E-12 8.3E-17 155.7 -1.9 226 510-743 105-348 (594)
148 1w8a_A SLIT protein; signaling 99.1 1.7E-10 5.7E-15 117.8 11.9 125 513-640 11-138 (192)
149 2wfh_A SLIT homolog 2 protein 99.1 2.3E-10 7.7E-15 116.9 12.7 99 538-639 14-113 (193)
150 1fnn_A CDC6P, cell division co 99.1 5.9E-10 2E-14 127.0 16.4 295 188-489 16-387 (389)
151 2chg_A Replication factor C sm 99.1 6.8E-10 2.3E-14 115.5 14.0 179 186-380 14-204 (226)
152 2o6r_A Variable lymphocyte rec 99.0 1.9E-09 6.5E-14 108.3 14.6 80 536-619 9-90 (177)
153 1ds9_A Outer arm dynein; leuci 99.0 1.4E-12 4.9E-17 133.9 -9.9 86 549-638 40-125 (198)
154 2o6r_A Variable lymphocyte rec 99.0 3E-09 1E-13 106.7 14.1 124 584-723 10-135 (177)
155 1ds9_A Outer arm dynein; leuci 99.0 1.1E-11 3.7E-16 127.3 -6.3 114 522-639 36-151 (198)
156 1sxj_B Activator 1 37 kDa subu 98.9 5E-09 1.7E-13 116.0 13.2 179 186-380 18-210 (323)
157 3sb4_A Hypothetical leucine ri 98.8 5.8E-09 2E-13 116.0 10.2 87 627-729 225-313 (329)
158 2r9u_A Variable lymphocyte rec 98.8 1.4E-08 4.8E-13 101.6 11.7 100 537-639 15-116 (174)
159 3g39_A Variable lymphocyte rec 98.8 1.5E-08 5.2E-13 100.9 11.7 101 536-639 11-113 (170)
160 2r9u_A Variable lymphocyte rec 98.8 3E-08 1E-12 99.2 12.4 103 584-704 15-120 (174)
161 3g39_A Variable lymphocyte rec 98.8 3.3E-08 1.1E-12 98.5 11.4 62 660-723 50-113 (170)
162 1iqp_A RFCS; clamp loader, ext 98.8 2.8E-08 9.6E-13 110.1 12.0 180 186-381 22-213 (327)
163 1hqc_A RUVB; extended AAA-ATPa 98.7 2.2E-07 7.4E-12 102.9 18.0 249 187-470 10-301 (324)
164 2chq_A Replication factor C sm 98.5 5.4E-07 1.9E-11 99.3 14.6 181 186-379 14-203 (319)
165 2ifg_A High affinity nerve gro 98.5 2.1E-07 7.3E-12 104.0 11.3 101 538-639 12-114 (347)
166 3un9_A NLR family member X1; l 98.5 2.1E-09 7.3E-14 121.3 -6.4 107 533-639 71-194 (372)
167 1jr3_A DNA polymerase III subu 98.5 8.2E-07 2.8E-11 100.3 14.9 189 187-380 14-221 (373)
168 3un9_A NLR family member X1; l 98.5 2.2E-09 7.6E-14 121.2 -6.6 160 556-723 71-250 (372)
169 2ifg_A High affinity nerve gro 98.5 3.1E-07 1E-11 102.8 10.3 105 514-620 12-118 (347)
170 4fdw_A Leucine rich hypothetic 98.5 2.5E-06 8.5E-11 97.1 17.9 188 535-743 158-355 (401)
171 3bos_A Putative DNA replicatio 98.5 3.2E-07 1.1E-11 96.6 9.7 174 187-380 26-217 (242)
172 1jbk_A CLPB protein; beta barr 98.5 2.9E-07 9.8E-12 93.0 9.0 146 187-344 20-194 (195)
173 3h4m_A Proteasome-activating n 98.5 7E-07 2.4E-11 96.8 12.4 182 185-378 13-229 (285)
174 3pfi_A Holliday junction ATP-d 98.4 3.3E-06 1.1E-10 93.9 17.8 262 187-481 27-327 (338)
175 2ra8_A Uncharacterized protein 98.4 4.7E-08 1.6E-12 109.5 2.5 136 577-723 168-318 (362)
176 3d8b_A Fidgetin-like protein 1 98.4 3.2E-06 1.1E-10 94.7 16.9 204 165-381 62-296 (357)
177 3sb4_A Hypothetical leucine ri 98.4 5.3E-07 1.8E-11 100.0 10.3 171 533-719 100-328 (329)
178 1sxj_A Activator 1 95 kDa subu 98.4 2.6E-06 8.9E-11 100.4 16.0 184 186-379 36-252 (516)
179 4fdw_A Leucine rich hypothetic 98.4 1E-05 3.4E-10 92.1 20.0 103 530-638 176-281 (401)
180 2ra8_A Uncharacterized protein 98.4 4.5E-08 1.5E-12 109.6 0.2 162 529-702 134-320 (362)
181 3eie_A Vacuolar protein sortin 98.4 8.9E-06 3.1E-10 89.7 18.0 184 186-380 15-228 (322)
182 1d2n_A N-ethylmaleimide-sensit 98.3 2.7E-06 9.4E-11 91.5 13.3 148 211-372 62-229 (272)
183 3b9p_A CG5977-PA, isoform A; A 98.3 6E-06 2.1E-10 90.0 15.6 197 173-380 3-233 (297)
184 2qz4_A Paraplegin; AAA+, SPG7, 98.3 5.7E-06 2E-10 88.3 14.4 183 188-379 5-221 (262)
185 2qp9_X Vacuolar protein sortin 98.3 1.5E-05 5E-10 89.2 17.7 184 186-380 48-261 (355)
186 1sxj_E Activator 1 40 kDa subu 98.3 4E-06 1.4E-10 93.9 13.1 190 185-378 10-235 (354)
187 2z4s_A Chromosomal replication 98.2 2.4E-06 8.3E-11 98.4 9.7 181 188-377 104-303 (440)
188 1sxj_D Activator 1 41 kDa subu 98.2 6.2E-06 2.1E-10 92.2 12.1 181 186-379 34-234 (353)
189 1xwi_A SKD1 protein; VPS4B, AA 98.2 5.2E-05 1.8E-09 83.5 18.5 184 187-381 10-224 (322)
190 2p65_A Hypothetical protein PF 98.1 3.4E-06 1.2E-10 84.6 8.1 50 187-239 20-69 (187)
191 3syl_A Protein CBBX; photosynt 98.1 1.4E-05 4.6E-10 87.7 13.6 150 190-350 32-219 (309)
192 3vfd_A Spastin; ATPase, microt 98.1 3.3E-05 1.1E-09 87.6 16.7 185 185-380 111-326 (389)
193 2zan_A Vacuolar protein sortin 98.1 3.8E-05 1.3E-09 88.6 16.7 185 185-380 130-345 (444)
194 1l8q_A Chromosomal replication 98.1 7.9E-06 2.7E-10 90.3 10.6 176 188-374 10-202 (324)
195 3u61_B DNA polymerase accessor 98.1 1.4E-05 4.8E-10 88.3 12.4 169 186-375 23-211 (324)
196 3pvs_A Replication-associated 98.1 1E-05 3.5E-10 93.0 11.2 176 186-378 23-213 (447)
197 3cf0_A Transitional endoplasmi 98.0 8.3E-05 2.8E-09 81.1 16.8 155 187-349 13-200 (301)
198 3uk6_A RUVB-like 2; hexameric 98.0 4.7E-05 1.6E-09 85.6 14.1 52 188-240 43-97 (368)
199 3te6_A Regulatory protein SIR3 97.9 2.5E-05 8.7E-10 84.9 10.5 160 189-349 20-212 (318)
200 4b4t_J 26S protease regulatory 97.8 0.00015 5.2E-09 80.8 14.4 173 187-372 146-353 (405)
201 3hu3_A Transitional endoplasmi 97.8 7.1E-05 2.4E-09 86.9 12.1 180 188-379 203-414 (489)
202 3ec2_A DNA replication protein 97.8 1.4E-05 5E-10 79.9 4.8 27 212-238 37-63 (180)
203 1sxj_C Activator 1 40 kDa subu 97.8 0.00014 4.8E-09 80.8 13.2 174 187-376 23-208 (340)
204 4b4t_M 26S protease regulatory 97.8 8.3E-05 2.8E-09 84.2 11.2 174 186-372 178-386 (434)
205 1in4_A RUVB, holliday junction 97.7 0.00085 2.9E-08 74.1 18.9 255 187-475 23-318 (334)
206 1lv7_A FTSH; alpha/beta domain 97.7 0.00024 8.1E-09 75.4 13.9 154 186-348 9-195 (257)
207 1a5t_A Delta prime, HOLB; zinc 97.7 0.00014 4.7E-09 80.6 12.2 175 196-380 9-205 (334)
208 4b4t_L 26S protease subunit RP 97.7 0.00026 9E-09 80.2 14.5 172 188-372 180-386 (437)
209 4b4t_H 26S protease regulatory 97.7 0.00034 1.2E-08 79.0 15.2 171 188-372 208-414 (467)
210 3pxg_A Negative regulator of g 97.7 0.00018 6.2E-09 83.4 12.6 147 187-348 178-338 (468)
211 3n70_A Transport activator; si 97.7 3E-05 1E-09 74.6 4.7 47 190-237 2-48 (145)
212 4fs7_A Uncharacterized protein 97.6 0.00046 1.6E-08 78.2 15.2 59 659-721 292-352 (394)
213 2r62_A Cell division protease 97.6 2.2E-05 7.6E-10 84.0 3.7 153 187-348 9-196 (268)
214 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00036 1.2E-08 86.3 14.4 154 187-348 184-362 (758)
215 2ce7_A Cell division protein F 97.6 0.00045 1.5E-08 79.5 13.9 176 187-373 14-221 (476)
216 4b4t_K 26S protease regulatory 97.6 0.00032 1.1E-08 79.3 12.3 171 188-372 171-378 (428)
217 1qvr_A CLPB protein; coiled co 97.6 0.00027 9.2E-09 88.5 12.8 153 187-347 168-344 (854)
218 4b4t_I 26S protease regulatory 97.6 0.00034 1.2E-08 78.2 12.1 173 187-372 180-387 (437)
219 3t15_A Ribulose bisphosphate c 97.5 0.00047 1.6E-08 74.7 12.8 31 211-241 34-64 (293)
220 1io0_A Tropomodulin; LRR prote 97.5 6.8E-06 2.3E-10 82.8 -1.8 42 577-618 32-78 (185)
221 3e4g_A ATP synthase subunit S, 97.5 4.2E-05 1.4E-09 75.3 3.8 62 534-595 61-128 (176)
222 1io0_A Tropomodulin; LRR prote 97.5 2.9E-05 1E-09 78.1 1.8 64 528-591 30-103 (185)
223 3pxi_A Negative regulator of g 97.4 0.0014 4.7E-08 81.0 16.6 147 187-348 178-338 (758)
224 2w58_A DNAI, primosome compone 97.4 0.00022 7.5E-09 72.6 7.4 62 187-248 23-89 (202)
225 3e4g_A ATP synthase subunit S, 97.4 3.9E-05 1.3E-09 75.6 1.5 82 665-748 62-154 (176)
226 1ofh_A ATP-dependent HSL prote 97.3 0.00034 1.2E-08 76.2 7.9 51 189-239 15-76 (310)
227 4fcw_A Chaperone protein CLPB; 97.3 0.0011 3.6E-08 72.4 11.6 51 190-240 18-74 (311)
228 4fs7_A Uncharacterized protein 97.2 0.0038 1.3E-07 70.6 15.8 35 530-565 158-193 (394)
229 3co5_A Putative two-component 97.2 9.6E-05 3.3E-09 70.8 1.4 47 190-237 5-51 (143)
230 2gno_A DNA polymerase III, gam 97.1 0.0011 3.9E-08 71.9 9.6 141 193-348 1-152 (305)
231 3cf2_A TER ATPase, transitiona 97.1 0.0014 4.9E-08 79.7 11.1 173 188-373 203-407 (806)
232 2kjq_A DNAA-related protein; s 97.1 0.00075 2.6E-08 65.0 7.0 35 214-248 37-71 (149)
233 3m6a_A ATP-dependent protease 97.1 0.0047 1.6E-07 72.8 14.9 156 189-348 81-266 (543)
234 2bjv_A PSP operon transcriptio 97.0 0.00048 1.6E-08 73.4 5.7 50 188-238 5-54 (265)
235 3rw6_A Nuclear RNA export fact 97.0 0.00032 1.1E-08 74.4 3.9 37 532-568 168-207 (267)
236 1ixz_A ATP-dependent metallopr 97.0 0.0063 2.1E-07 64.1 13.5 153 187-348 14-199 (254)
237 4gt6_A Cell surface protein; l 96.9 0.022 7.6E-07 64.2 18.1 82 529-614 82-169 (394)
238 3rw6_A Nuclear RNA export fact 96.9 0.0006 2.1E-08 72.2 4.6 81 625-718 167-257 (267)
239 2dhr_A FTSH; AAA+ protein, hex 96.9 0.011 3.8E-07 68.3 15.5 151 186-348 28-214 (499)
240 2x8a_A Nuclear valosin-contain 96.8 0.013 4.5E-07 62.5 14.6 124 216-348 47-191 (274)
241 1eiw_A Hypothetical protein MT 96.8 0.00081 2.8E-08 60.4 4.1 63 12-94 3-65 (111)
242 1iy2_A ATP-dependent metallopr 96.8 0.0056 1.9E-07 65.5 11.6 155 185-348 36-223 (278)
243 3pxi_A Negative regulator of g 96.8 0.0019 6.5E-08 79.7 8.7 149 189-348 491-675 (758)
244 1ypw_A Transitional endoplasmi 96.7 0.003 1E-07 78.1 9.4 153 187-349 202-386 (806)
245 1ojl_A Transcriptional regulat 96.6 0.0015 5.1E-08 71.1 5.3 48 189-237 2-49 (304)
246 2r44_A Uncharacterized protein 96.5 0.0045 1.5E-07 68.2 8.5 146 188-349 26-199 (331)
247 4gt6_A Cell surface protein; l 96.5 0.049 1.7E-06 61.3 16.9 78 658-741 282-365 (394)
248 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0021 7.3E-08 69.2 4.2 71 213-292 123-194 (331)
249 1r6b_X CLPA protein; AAA+, N-t 96.2 0.011 3.7E-07 73.0 10.5 50 189-238 458-513 (758)
250 1um8_A ATP-dependent CLP prote 96.1 0.018 6.3E-07 64.4 10.9 27 214-240 73-99 (376)
251 2c9o_A RUVB-like 1; hexameric 96.1 0.0046 1.6E-07 71.4 5.7 53 187-240 35-90 (456)
252 3cf2_A TER ATPase, transitiona 96.0 0.019 6.5E-07 69.9 10.7 152 188-348 476-661 (806)
253 2qgz_A Helicase loader, putati 95.9 0.01 3.6E-07 64.4 7.1 36 213-248 152-188 (308)
254 1g5t_A COB(I)alamin adenosyltr 95.9 0.012 4.2E-07 58.6 6.9 102 214-318 29-163 (196)
255 3lw7_A Adenylate kinase relate 95.7 0.03 1E-06 54.6 9.3 23 214-237 2-24 (179)
256 4h09_A Hypothetical leucine ri 95.7 0.33 1.1E-05 54.0 19.0 59 659-720 258-318 (379)
257 1ye8_A Protein THEP1, hypothet 95.7 0.047 1.6E-06 54.0 10.3 24 215-238 2-25 (178)
258 4h09_A Hypothetical leucine ri 95.7 0.048 1.6E-06 60.9 11.8 124 577-719 213-340 (379)
259 3hyn_A Putative signal transdu 95.6 0.029 9.9E-07 54.0 8.0 103 13-123 5-131 (189)
260 2cvh_A DNA repair and recombin 95.6 0.011 3.7E-07 60.5 5.7 34 212-248 19-52 (220)
261 2b8t_A Thymidine kinase; deoxy 95.6 0.023 8E-07 58.2 8.1 105 212-319 11-127 (223)
262 1qvr_A CLPB protein; coiled co 95.6 0.027 9.1E-07 70.4 10.2 51 189-239 558-614 (854)
263 3jvv_A Twitching mobility prot 95.6 0.018 6.3E-07 63.6 7.8 105 214-321 124-234 (356)
264 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.02 6.7E-07 59.1 7.4 36 213-248 23-58 (235)
265 2eyu_A Twitching motility prot 95.4 0.025 8.4E-07 59.8 7.7 104 212-319 24-134 (261)
266 1zu4_A FTSY; GTPase, signal re 95.2 0.059 2E-06 58.6 10.1 37 211-247 103-139 (320)
267 3hr8_A Protein RECA; alpha and 95.2 0.071 2.4E-06 58.7 10.8 94 198-291 46-150 (356)
268 1j8m_F SRP54, signal recogniti 95.1 0.064 2.2E-06 57.7 9.9 36 213-248 98-133 (297)
269 1ypw_A Transitional endoplasmi 95.1 0.0082 2.8E-07 74.2 3.0 152 188-348 476-661 (806)
270 2zr9_A Protein RECA, recombina 95.0 0.06 2E-06 59.4 9.5 50 198-248 46-96 (349)
271 3sr0_A Adenylate kinase; phosp 95.0 0.046 1.6E-06 55.4 7.9 78 215-298 2-93 (206)
272 1rz3_A Hypothetical protein rb 95.0 0.025 8.5E-07 57.2 6.0 28 211-238 20-47 (201)
273 1qhx_A CPT, protein (chloramph 95.0 0.011 3.9E-07 58.2 3.1 26 214-239 4-29 (178)
274 2ewv_A Twitching motility prot 94.9 0.04 1.4E-06 61.4 7.7 103 212-318 135-244 (372)
275 2orw_A Thymidine kinase; TMTK, 94.8 0.017 5.9E-07 57.5 4.1 98 214-318 4-113 (184)
276 3umf_A Adenylate kinase; rossm 94.8 0.083 2.9E-06 53.9 9.2 84 211-299 27-127 (217)
277 1vma_A Cell division protein F 94.7 0.12 4.1E-06 55.7 10.7 37 211-247 102-138 (306)
278 3c8u_A Fructokinase; YP_612366 94.7 0.029 9.8E-07 57.1 5.3 28 211-238 20-47 (208)
279 1u94_A RECA protein, recombina 94.6 0.076 2.6E-06 58.6 9.0 51 198-249 48-99 (356)
280 3kb2_A SPBC2 prophage-derived 94.6 0.017 5.8E-07 56.5 3.4 25 214-238 2-26 (173)
281 3vaa_A Shikimate kinase, SK; s 94.4 0.021 7.2E-07 57.6 3.7 26 213-238 25-50 (199)
282 3trf_A Shikimate kinase, SK; a 94.4 0.02 6.9E-07 56.8 3.4 26 213-238 5-30 (185)
283 3hws_A ATP-dependent CLP prote 94.4 0.024 8.2E-07 63.2 4.2 50 190-239 16-77 (363)
284 3e70_C DPA, signal recognition 94.3 0.1 3.5E-06 56.9 9.0 30 211-240 127-156 (328)
285 2xxa_A Signal recognition part 94.2 0.12 4E-06 58.7 9.5 30 211-240 98-127 (433)
286 2pt7_A CAG-ALFA; ATPase, prote 94.2 0.033 1.1E-06 61.0 4.8 100 214-317 172-274 (330)
287 1xp8_A RECA protein, recombina 94.1 0.068 2.3E-06 59.2 7.1 50 198-248 59-109 (366)
288 1nks_A Adenylate kinase; therm 94.0 0.048 1.6E-06 54.2 5.4 26 214-239 2-27 (194)
289 3io5_A Recombination and repai 94.0 0.075 2.6E-06 57.0 6.9 34 215-248 30-65 (333)
290 2yvu_A Probable adenylyl-sulfa 94.0 0.055 1.9E-06 53.7 5.7 28 212-239 12-39 (186)
291 1zuh_A Shikimate kinase; alpha 93.9 0.031 1E-06 54.5 3.5 27 212-238 6-32 (168)
292 2rhm_A Putative kinase; P-loop 93.8 0.041 1.4E-06 54.8 4.4 26 213-238 5-30 (193)
293 1uj2_A Uridine-cytidine kinase 93.8 0.034 1.2E-06 58.4 3.9 29 211-239 20-48 (252)
294 3uie_A Adenylyl-sulfate kinase 93.8 0.056 1.9E-06 54.4 5.3 27 212-238 24-50 (200)
295 1ex7_A Guanylate kinase; subst 93.7 0.023 7.9E-07 56.5 2.2 29 214-242 2-30 (186)
296 1zp6_A Hypothetical protein AT 93.7 0.038 1.3E-06 55.0 3.8 25 212-236 8-32 (191)
297 3fwy_A Light-independent proto 93.7 0.054 1.8E-06 58.8 5.2 38 211-248 46-83 (314)
298 3iij_A Coilin-interacting nucl 93.7 0.028 9.5E-07 55.5 2.7 26 213-238 11-36 (180)
299 1ly1_A Polynucleotide kinase; 93.7 0.036 1.2E-06 54.5 3.6 22 214-235 3-24 (181)
300 3ice_A Transcription terminati 93.7 0.034 1.2E-06 61.1 3.6 28 213-240 174-201 (422)
301 1kag_A SKI, shikimate kinase I 93.7 0.027 9.4E-07 55.1 2.6 25 214-238 5-29 (173)
302 1sky_E F1-ATPase, F1-ATP synth 93.6 0.045 1.5E-06 62.1 4.6 30 215-244 153-182 (473)
303 3dm5_A SRP54, signal recogniti 93.6 0.27 9.3E-06 55.5 11.0 29 212-240 99-127 (443)
304 2ze6_A Isopentenyl transferase 93.4 0.043 1.5E-06 57.6 3.9 25 214-238 2-26 (253)
305 1odf_A YGR205W, hypothetical 3 93.4 0.061 2.1E-06 57.7 5.1 29 211-239 29-57 (290)
306 2jaq_A Deoxyguanosine kinase; 93.4 0.04 1.4E-06 55.4 3.5 25 215-239 2-26 (205)
307 3ch4_B Pmkase, phosphomevalona 93.4 0.17 5.7E-06 50.7 7.9 27 211-237 9-35 (202)
308 1via_A Shikimate kinase; struc 93.4 0.04 1.4E-06 54.2 3.3 24 215-238 6-29 (175)
309 2ga8_A Hypothetical 39.9 kDa p 93.4 0.048 1.6E-06 59.6 4.1 31 211-241 22-52 (359)
310 2c95_A Adenylate kinase 1; tra 93.3 0.046 1.6E-06 54.6 3.7 26 213-238 9-34 (196)
311 4eun_A Thermoresistant glucoki 93.3 0.053 1.8E-06 54.6 4.2 26 212-237 28-53 (200)
312 1xjc_A MOBB protein homolog; s 93.3 0.068 2.3E-06 52.1 4.7 29 212-240 3-31 (169)
313 1kht_A Adenylate kinase; phosp 93.3 0.046 1.6E-06 54.3 3.6 26 214-239 4-29 (192)
314 1v5w_A DMC1, meiotic recombina 93.2 0.13 4.5E-06 56.5 7.6 48 200-248 110-163 (343)
315 2iyv_A Shikimate kinase, SK; t 93.2 0.036 1.2E-06 54.9 2.7 24 215-238 4-27 (184)
316 3t61_A Gluconokinase; PSI-biol 93.2 0.041 1.4E-06 55.4 3.1 25 213-237 18-42 (202)
317 1kgd_A CASK, peripheral plasma 93.2 0.043 1.5E-06 54.2 3.1 26 213-238 5-30 (180)
318 1knq_A Gluconate kinase; ALFA/ 93.1 0.055 1.9E-06 53.0 3.8 25 213-237 8-32 (175)
319 2bdt_A BH3686; alpha-beta prot 93.1 0.07 2.4E-06 53.0 4.6 31 214-248 3-33 (189)
320 1nn5_A Similar to deoxythymidy 93.0 0.078 2.7E-06 53.8 5.0 29 213-241 9-37 (215)
321 1jr3_D DNA polymerase III, del 93.0 0.59 2E-05 51.2 12.5 153 213-378 18-183 (343)
322 1tev_A UMP-CMP kinase; ploop, 93.0 0.058 2E-06 53.7 3.9 24 214-237 4-27 (196)
323 2z43_A DNA repair and recombin 93.0 0.1 3.5E-06 57.0 6.2 48 200-248 95-148 (324)
324 1e6c_A Shikimate kinase; phosp 93.0 0.042 1.4E-06 53.7 2.8 25 214-238 3-27 (173)
325 2bwj_A Adenylate kinase 5; pho 93.0 0.053 1.8E-06 54.3 3.6 25 214-238 13-37 (199)
326 3kl4_A SRP54, signal recogniti 93.0 0.25 8.7E-06 55.7 9.4 36 212-247 96-131 (433)
327 2q6t_A DNAB replication FORK h 93.0 0.21 7E-06 57.2 8.9 54 193-248 182-236 (444)
328 2plr_A DTMP kinase, probable t 92.9 0.089 3E-06 53.2 5.2 28 214-241 5-32 (213)
329 1y63_A LMAJ004144AAA protein; 92.9 0.058 2E-06 53.5 3.6 25 212-236 9-33 (184)
330 1ukz_A Uridylate kinase; trans 92.9 0.063 2.2E-06 54.0 4.0 27 211-237 13-39 (203)
331 3cm0_A Adenylate kinase; ATP-b 92.9 0.061 2.1E-06 53.2 3.8 25 213-237 4-28 (186)
332 3tau_A Guanylate kinase, GMP k 92.9 0.053 1.8E-06 55.0 3.4 28 212-239 7-34 (208)
333 2pt5_A Shikimate kinase, SK; a 92.9 0.06 2.1E-06 52.3 3.6 24 215-238 2-25 (168)
334 2vli_A Antibiotic resistance p 92.8 0.045 1.5E-06 54.0 2.7 26 214-239 6-31 (183)
335 1g8p_A Magnesium-chelatase 38 92.8 0.037 1.3E-06 61.1 2.3 50 186-238 21-70 (350)
336 3rfe_A Platelet glycoprotein I 92.8 0.14 4.7E-06 47.6 5.8 54 668-723 12-66 (130)
337 2r2a_A Uncharacterized protein 92.8 0.11 3.9E-06 52.1 5.6 22 215-236 7-28 (199)
338 1qf9_A UMP/CMP kinase, protein 92.7 0.067 2.3E-06 53.2 3.9 26 213-238 6-31 (194)
339 2qor_A Guanylate kinase; phosp 92.7 0.048 1.6E-06 55.2 2.8 27 212-238 11-37 (204)
340 3a00_A Guanylate kinase, GMP k 92.6 0.049 1.7E-06 54.2 2.6 26 214-239 2-27 (186)
341 2cdn_A Adenylate kinase; phosp 92.6 0.074 2.5E-06 53.5 4.0 26 213-238 20-45 (201)
342 1uf9_A TT1252 protein; P-loop, 92.5 0.076 2.6E-06 53.3 4.0 26 211-236 6-31 (203)
343 3bh0_A DNAB-like replicative h 92.5 0.17 6E-06 54.9 7.0 37 212-248 67-103 (315)
344 1cke_A CK, MSSA, protein (cyti 92.5 0.069 2.3E-06 54.8 3.6 25 214-238 6-30 (227)
345 3nbx_X ATPase RAVA; AAA+ ATPas 92.4 0.04 1.4E-06 63.7 2.0 45 189-238 22-66 (500)
346 1tue_A Replication protein E1; 92.4 0.062 2.1E-06 53.8 3.0 40 198-239 45-84 (212)
347 2dr3_A UPF0273 protein PH0284; 92.4 0.079 2.7E-06 55.0 4.0 36 213-248 23-58 (247)
348 2wwf_A Thymidilate kinase, put 92.3 0.078 2.7E-06 53.7 3.8 28 213-240 10-37 (212)
349 2og2_A Putative signal recogni 92.3 0.55 1.9E-05 51.6 10.9 29 212-240 156-184 (359)
350 2if2_A Dephospho-COA kinase; a 92.3 0.073 2.5E-06 53.6 3.5 21 215-235 3-23 (204)
351 2qt1_A Nicotinamide riboside k 92.3 0.081 2.8E-06 53.5 3.9 27 211-237 19-45 (207)
352 3asz_A Uridine kinase; cytidin 92.3 0.092 3.2E-06 53.2 4.3 27 212-238 5-31 (211)
353 3a4m_A L-seryl-tRNA(SEC) kinas 92.3 0.082 2.8E-06 55.7 4.0 26 213-238 4-29 (260)
354 1aky_A Adenylate kinase; ATP:A 92.3 0.071 2.4E-06 54.5 3.5 26 213-238 4-29 (220)
355 2pbr_A DTMP kinase, thymidylat 92.2 0.077 2.6E-06 52.8 3.6 24 215-238 2-25 (195)
356 3ney_A 55 kDa erythrocyte memb 92.2 0.074 2.5E-06 53.3 3.4 27 212-238 18-44 (197)
357 3gmt_A Adenylate kinase; ssgci 92.2 0.33 1.1E-05 49.7 8.2 80 215-299 10-105 (230)
358 3tr0_A Guanylate kinase, GMP k 92.1 0.077 2.6E-06 53.4 3.4 24 214-237 8-31 (205)
359 4a74_A DNA repair and recombin 92.1 0.13 4.4E-06 52.7 5.2 26 212-237 24-49 (231)
360 3l0o_A Transcription terminati 92.1 0.1 3.4E-06 57.3 4.4 28 212-239 174-201 (427)
361 1n0w_A DNA repair protein RAD5 92.0 0.11 3.6E-06 53.9 4.5 37 212-248 23-65 (243)
362 2j41_A Guanylate kinase; GMP, 92.0 0.081 2.8E-06 53.3 3.4 25 213-237 6-30 (207)
363 3gd7_A Fusion complex of cysti 92.0 0.37 1.3E-05 53.7 9.0 23 213-235 47-69 (390)
364 3tlx_A Adenylate kinase 2; str 91.9 0.074 2.5E-06 55.5 3.1 26 212-237 28-53 (243)
365 1gvn_B Zeta; postsegregational 91.9 0.12 4E-06 55.4 4.7 27 211-237 31-57 (287)
366 2bbw_A Adenylate kinase 4, AK4 91.8 0.089 3E-06 54.9 3.6 26 213-238 27-52 (246)
367 1zak_A Adenylate kinase; ATP:A 91.8 0.079 2.7E-06 54.2 3.2 26 213-238 5-30 (222)
368 2r6a_A DNAB helicase, replicat 91.8 0.15 5.2E-06 58.4 5.9 37 212-248 202-239 (454)
369 1g41_A Heat shock protein HSLU 91.8 0.11 3.7E-06 58.8 4.4 29 213-241 50-78 (444)
370 3fb4_A Adenylate kinase; psych 91.7 0.096 3.3E-06 53.3 3.6 23 215-237 2-24 (216)
371 1zd8_A GTP:AMP phosphotransfer 91.7 0.088 3E-06 54.1 3.4 25 213-237 7-31 (227)
372 1jjv_A Dephospho-COA kinase; P 91.7 0.091 3.1E-06 53.0 3.4 22 214-235 3-24 (206)
373 2grj_A Dephospho-COA kinase; T 91.7 0.097 3.3E-06 52.3 3.5 26 212-237 11-36 (192)
374 2z0h_A DTMP kinase, thymidylat 91.7 0.099 3.4E-06 52.1 3.6 25 215-239 2-26 (197)
375 4gp7_A Metallophosphoesterase; 91.6 0.078 2.7E-06 51.9 2.7 21 213-233 9-29 (171)
376 3nwj_A ATSK2; P loop, shikimat 91.6 0.078 2.7E-06 55.4 2.8 25 214-238 49-73 (250)
377 2wsm_A Hydrogenase expression/ 91.6 0.11 3.7E-06 53.0 3.9 30 211-240 28-57 (221)
378 3k1j_A LON protease, ATP-depen 91.6 0.093 3.2E-06 62.6 3.8 51 185-240 37-87 (604)
379 1gtv_A TMK, thymidylate kinase 91.5 0.082 2.8E-06 53.6 2.8 25 215-239 2-26 (214)
380 4e22_A Cytidylate kinase; P-lo 91.5 0.098 3.3E-06 54.9 3.4 26 213-238 27-52 (252)
381 4a1f_A DNAB helicase, replicat 91.4 0.13 4.4E-06 56.2 4.5 36 213-248 46-81 (338)
382 2hf9_A Probable hydrogenase ni 91.4 0.15 5.3E-06 52.0 4.9 30 211-240 36-65 (226)
383 3tqc_A Pantothenate kinase; bi 91.4 0.16 5.4E-06 55.1 5.1 28 211-238 90-117 (321)
384 2ffh_A Protein (FFH); SRP54, s 91.4 0.52 1.8E-05 53.1 9.4 36 212-247 97-132 (425)
385 3dl0_A Adenylate kinase; phosp 91.4 0.1 3.4E-06 53.2 3.3 23 215-237 2-24 (216)
386 1m7g_A Adenylylsulfate kinase; 91.3 0.13 4.5E-06 52.2 4.1 27 212-238 24-50 (211)
387 1pgv_A TMD-1, tropomodulin TMD 91.3 0.031 1.1E-06 55.9 -0.6 13 708-720 153-165 (197)
388 2ehv_A Hypothetical protein PH 91.3 0.12 4.1E-06 53.7 4.0 24 212-235 29-52 (251)
389 1lvg_A Guanylate kinase, GMP k 91.3 0.09 3.1E-06 52.9 2.8 25 214-238 5-29 (198)
390 2pez_A Bifunctional 3'-phospho 91.3 0.13 4.5E-06 50.5 4.0 26 213-238 5-30 (179)
391 1pgv_A TMD-1, tropomodulin TMD 91.2 0.049 1.7E-06 54.5 0.7 64 660-723 66-137 (197)
392 3ake_A Cytidylate kinase; CMP 91.1 0.12 4.2E-06 52.0 3.7 24 215-238 4-27 (208)
393 2jeo_A Uridine-cytidine kinase 91.1 0.14 4.7E-06 53.4 4.2 26 212-237 24-49 (245)
394 3d3q_A TRNA delta(2)-isopenten 91.0 0.12 4.2E-06 56.2 3.7 25 214-238 8-32 (340)
395 3p32_A Probable GTPase RV1496/ 91.0 0.21 7.1E-06 55.3 5.6 29 211-239 77-105 (355)
396 2v54_A DTMP kinase, thymidylat 91.0 0.11 3.7E-06 52.2 3.1 24 214-237 5-28 (204)
397 1rj9_A FTSY, signal recognitio 90.9 0.18 6.2E-06 54.3 5.0 29 212-240 101-129 (304)
398 3end_A Light-independent proto 90.9 0.19 6.5E-06 54.2 5.2 38 211-248 39-76 (307)
399 3aez_A Pantothenate kinase; tr 90.9 0.14 4.9E-06 55.4 4.2 28 211-238 88-115 (312)
400 3be4_A Adenylate kinase; malar 90.9 0.13 4.5E-06 52.4 3.7 24 214-237 6-29 (217)
401 1yrb_A ATP(GTP)binding protein 90.8 0.22 7.5E-06 52.2 5.4 27 212-238 13-39 (262)
402 1cp2_A CP2, nitrogenase iron p 90.7 0.22 7.5E-06 52.5 5.4 35 214-248 2-36 (269)
403 1ak2_A Adenylate kinase isoenz 90.7 0.14 4.7E-06 52.9 3.7 26 213-238 16-41 (233)
404 2f6r_A COA synthase, bifunctio 90.7 0.14 4.8E-06 54.6 3.8 25 211-235 73-97 (281)
405 2p5t_B PEZT; postsegregational 90.7 0.11 3.9E-06 54.4 3.0 28 211-238 30-57 (253)
406 3r20_A Cytidylate kinase; stru 90.6 0.14 4.8E-06 52.7 3.6 25 214-238 10-34 (233)
407 1e4v_A Adenylate kinase; trans 90.6 0.15 5.1E-06 51.8 3.8 23 215-237 2-24 (214)
408 2v3c_C SRP54, signal recogniti 90.6 0.14 4.9E-06 58.0 4.0 36 212-247 98-133 (432)
409 3crm_A TRNA delta(2)-isopenten 90.6 0.13 4.4E-06 55.6 3.4 25 214-238 6-30 (323)
410 2px0_A Flagellar biosynthesis 90.5 0.15 5.3E-06 54.7 3.9 27 212-238 104-130 (296)
411 3bgw_A DNAB-like replicative h 90.5 0.57 1.9E-05 53.4 8.8 37 212-248 196-232 (444)
412 3a8t_A Adenylate isopentenyltr 90.4 0.12 4E-06 56.2 2.9 26 213-238 40-65 (339)
413 1sq5_A Pantothenate kinase; P- 90.4 0.22 7.5E-06 53.9 5.1 28 211-238 78-105 (308)
414 2xb4_A Adenylate kinase; ATP-b 90.4 0.15 5.1E-06 52.3 3.6 23 215-237 2-24 (223)
415 1a7j_A Phosphoribulokinase; tr 90.3 0.12 3.9E-06 55.5 2.7 27 212-238 4-30 (290)
416 1np6_A Molybdopterin-guanine d 90.3 0.23 8E-06 48.6 4.7 27 213-239 6-32 (174)
417 1znw_A Guanylate kinase, GMP k 90.3 0.14 4.8E-06 51.8 3.2 25 213-237 20-44 (207)
418 1vht_A Dephospho-COA kinase; s 90.2 0.17 5.9E-06 51.5 3.9 23 213-235 4-26 (218)
419 2r8r_A Sensor protein; KDPD, P 90.2 0.23 7.8E-06 50.6 4.6 29 215-243 8-37 (228)
420 1htw_A HI0065; nucleotide-bind 90.2 0.19 6.5E-06 48.4 3.9 26 212-237 32-57 (158)
421 1z6g_A Guanylate kinase; struc 90.1 0.13 4.4E-06 52.6 2.7 25 213-237 23-47 (218)
422 2afh_E Nitrogenase iron protei 90.1 0.27 9.1E-06 52.6 5.4 36 213-248 2-37 (289)
423 3b9q_A Chloroplast SRP recepto 90.0 0.26 8.9E-06 53.1 5.2 29 211-239 98-126 (302)
424 3cmu_A Protein RECA, recombina 89.8 0.32 1.1E-05 64.6 6.7 91 200-290 1414-1515(2050)
425 1s96_A Guanylate kinase, GMP k 89.8 0.16 5.5E-06 51.9 3.1 27 212-238 15-41 (219)
426 3exa_A TRNA delta(2)-isopenten 89.7 0.18 6.1E-06 54.0 3.5 25 213-237 3-27 (322)
427 1cr0_A DNA primase/helicase; R 89.7 0.27 9.2E-06 52.7 5.0 35 213-247 35-70 (296)
428 2ged_A SR-beta, signal recogni 89.6 0.23 7.8E-06 49.2 4.1 26 211-236 46-71 (193)
429 2i3b_A HCR-ntpase, human cance 89.6 0.16 5.6E-06 50.5 3.0 24 215-238 3-26 (189)
430 3zvl_A Bifunctional polynucleo 89.6 0.42 1.4E-05 54.0 6.7 27 211-237 256-282 (416)
431 2zts_A Putative uncharacterize 89.5 0.21 7.3E-06 51.7 4.0 48 200-248 18-66 (251)
432 3e1s_A Exodeoxyribonuclease V, 89.3 0.44 1.5E-05 56.2 6.9 103 214-319 205-317 (574)
433 1xx6_A Thymidine kinase; NESG, 89.3 0.83 2.9E-05 45.4 7.9 104 212-319 7-119 (191)
434 1ls1_A Signal recognition part 89.3 0.32 1.1E-05 52.2 5.2 36 212-247 97-132 (295)
435 3lnc_A Guanylate kinase, GMP k 89.2 0.13 4.6E-06 52.9 2.1 25 213-237 27-52 (231)
436 2f1r_A Molybdopterin-guanine d 89.1 0.13 4.5E-06 50.3 1.8 26 214-239 3-28 (171)
437 3foz_A TRNA delta(2)-isopenten 89.0 0.25 8.6E-06 52.8 4.0 26 212-237 9-34 (316)
438 1puj_A YLQF, conserved hypothe 89.0 1.8 6.1E-05 45.9 10.8 53 53-113 7-61 (282)
439 3upu_A ATP-dependent DNA helic 88.8 0.52 1.8E-05 54.1 6.9 34 215-248 47-81 (459)
440 3cmw_A Protein RECA, recombina 88.8 1.3 4.4E-05 58.2 11.1 92 199-290 1417-1519(1706)
441 1nlf_A Regulatory protein REPA 88.7 0.37 1.3E-05 51.2 5.2 26 213-238 30-55 (279)
442 1fx0_B ATP synthase beta chain 88.6 0.46 1.6E-05 54.0 6.0 35 213-247 165-200 (498)
443 1ltq_A Polynucleotide kinase; 88.6 0.23 7.9E-06 53.3 3.6 23 214-236 3-25 (301)
444 1pzn_A RAD51, DNA repair and r 88.6 0.33 1.1E-05 53.5 4.8 27 211-237 129-155 (349)
445 2ck3_D ATP synthase subunit be 88.6 0.63 2.2E-05 52.6 7.1 35 213-247 153-188 (482)
446 3b85_A Phosphate starvation-in 88.6 0.22 7.4E-06 50.5 3.0 23 214-236 23-45 (208)
447 1q3t_A Cytidylate kinase; nucl 88.5 0.25 8.6E-06 51.0 3.6 27 211-237 14-40 (236)
448 4eaq_A DTMP kinase, thymidylat 88.5 0.31 1E-05 50.2 4.2 28 212-239 25-52 (229)
449 2yhs_A FTSY, cell division pro 88.4 0.38 1.3E-05 54.9 5.2 30 211-240 291-320 (503)
450 2qmh_A HPR kinase/phosphorylas 88.3 0.22 7.6E-06 49.5 2.8 25 213-237 34-58 (205)
451 4aby_A DNA repair protein RECN 88.3 1.6 5.5E-05 49.0 10.5 21 215-235 62-82 (415)
452 4dzz_A Plasmid partitioning pr 88.3 0.37 1.3E-05 48.3 4.6 35 214-248 2-37 (206)
453 3rfe_A Platelet glycoprotein I 88.3 0.71 2.4E-05 42.7 6.2 52 585-639 12-66 (130)
454 2ocp_A DGK, deoxyguanosine kin 88.2 0.29 9.9E-06 50.7 3.8 26 213-238 2-27 (241)
455 2onk_A Molybdate/tungstate ABC 88.2 0.24 8.1E-06 51.4 3.1 25 211-236 23-47 (240)
456 4dkx_A RAS-related protein RAB 88.2 0.22 7.5E-06 50.8 2.8 21 215-235 15-35 (216)
457 1oix_A RAS-related protein RAB 88.1 0.28 9.5E-06 48.7 3.5 24 213-236 29-52 (191)
458 1u0j_A DNA replication protein 88.1 0.32 1.1E-05 50.9 4.0 37 199-236 91-127 (267)
459 3qf4_B Uncharacterized ABC tra 88.1 0.75 2.6E-05 54.6 7.8 23 213-235 381-403 (598)
460 3eph_A TRNA isopentenyltransfe 88.0 0.3 1E-05 54.3 3.9 25 214-238 3-27 (409)
461 4a82_A Cystic fibrosis transme 88.0 0.61 2.1E-05 55.2 6.9 23 213-235 367-389 (578)
462 2pcj_A ABC transporter, lipopr 87.8 0.23 8E-06 50.9 2.8 33 214-247 31-63 (224)
463 2axn_A 6-phosphofructo-2-kinas 87.8 0.43 1.5E-05 55.5 5.4 31 212-242 34-64 (520)
464 2dyk_A GTP-binding protein; GT 87.8 0.32 1.1E-05 46.2 3.6 23 214-236 2-24 (161)
465 1svm_A Large T antigen; AAA+ f 87.8 0.28 9.7E-06 54.4 3.6 26 212-237 168-193 (377)
466 3cmu_A Protein RECA, recombina 87.8 1.5 5E-05 58.5 10.7 37 212-248 1080-1116(2050)
467 3fdi_A Uncharacterized protein 87.8 0.32 1.1E-05 48.9 3.7 26 214-239 7-32 (201)
468 3zq6_A Putative arsenical pump 87.6 0.58 2E-05 50.9 6.0 35 213-247 14-48 (324)
469 4hlc_A DTMP kinase, thymidylat 87.6 0.5 1.7E-05 47.6 5.0 31 214-244 3-33 (205)
470 1p9r_A General secretion pathw 87.5 0.99 3.4E-05 50.8 7.9 85 212-296 166-252 (418)
471 3ea0_A ATPase, para family; al 87.5 0.57 1.9E-05 48.4 5.6 37 212-248 3-41 (245)
472 3tif_A Uncharacterized ABC tra 87.5 0.24 8.3E-06 51.2 2.7 34 213-247 31-64 (235)
473 3qf4_A ABC transporter, ATP-bi 87.4 0.97 3.3E-05 53.5 8.2 23 213-235 369-391 (587)
474 3fkq_A NTRC-like two-domain pr 87.3 0.48 1.7E-05 52.7 5.2 49 24-82 28-81 (373)
475 2wji_A Ferrous iron transport 87.1 0.34 1.2E-05 46.6 3.4 22 214-235 4-25 (165)
476 2j37_W Signal recognition part 87.1 0.51 1.7E-05 54.4 5.3 30 211-240 99-128 (504)
477 2p67_A LAO/AO transport system 87.1 0.56 1.9E-05 51.4 5.5 29 211-239 54-82 (341)
478 2f9l_A RAB11B, member RAS onco 87.0 0.31 1E-05 48.7 3.1 24 213-236 5-28 (199)
479 1g8f_A Sulfate adenylyltransfe 86.9 0.39 1.3E-05 55.4 4.2 28 212-239 394-421 (511)
480 2cbz_A Multidrug resistance-as 86.9 0.27 9.3E-06 50.9 2.7 24 213-236 31-54 (237)
481 2i1q_A DNA repair and recombin 86.8 0.53 1.8E-05 51.2 5.1 37 200-237 86-122 (322)
482 3kjh_A CO dehydrogenase/acetyl 86.8 0.39 1.3E-05 49.7 3.9 33 216-248 3-35 (254)
483 2d2e_A SUFC protein; ABC-ATPas 86.8 0.32 1.1E-05 50.8 3.2 23 214-236 30-52 (250)
484 3lda_A DNA repair protein RAD5 86.8 0.47 1.6E-05 53.1 4.7 50 198-248 164-219 (400)
485 3gfo_A Cobalt import ATP-bindi 86.7 0.28 9.6E-06 52.0 2.7 22 214-235 35-56 (275)
486 2qi9_C Vitamin B12 import ATP- 86.6 0.31 1E-05 50.9 2.9 33 214-248 27-59 (249)
487 2ce2_X GTPase HRAS; signaling 86.6 0.37 1.3E-05 45.8 3.3 22 215-236 5-26 (166)
488 2gza_A Type IV secretion syste 86.5 0.68 2.3E-05 51.2 5.8 84 214-298 176-270 (361)
489 1b0u_A Histidine permease; ABC 86.5 0.29 1E-05 51.5 2.7 34 213-247 32-65 (262)
490 3io3_A DEHA2D07832P; chaperone 86.5 0.57 2E-05 51.4 5.1 38 211-248 16-55 (348)
491 2zu0_C Probable ATP-dependent 86.5 0.34 1.2E-05 51.1 3.2 35 213-247 46-81 (267)
492 1ji0_A ABC transporter; ATP bi 86.4 0.3 1E-05 50.7 2.7 33 214-247 33-65 (240)
493 4g1u_C Hemin import ATP-bindin 86.4 0.29 1E-05 51.6 2.6 34 213-247 37-70 (266)
494 3iqw_A Tail-anchored protein t 86.4 0.62 2.1E-05 50.8 5.3 37 212-248 15-51 (334)
495 2h92_A Cytidylate kinase; ross 86.3 0.32 1.1E-05 49.4 2.9 24 214-237 4-27 (219)
496 4gzl_A RAS-related C3 botulinu 86.3 0.44 1.5E-05 47.8 3.8 40 193-235 13-52 (204)
497 2v9p_A Replication protein E1; 86.2 0.36 1.2E-05 51.8 3.2 26 212-237 125-150 (305)
498 2zej_A Dardarin, leucine-rich 86.2 0.32 1.1E-05 47.8 2.7 21 215-235 4-24 (184)
499 1mv5_A LMRA, multidrug resista 86.2 0.37 1.2E-05 50.1 3.2 25 212-236 27-51 (243)
500 2olj_A Amino acid ABC transpor 86.2 0.31 1.1E-05 51.3 2.7 34 213-247 50-83 (263)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=7.6e-48 Score=378.42 Aligned_cols=170 Identities=47% Similarity=0.719 Sum_probs=145.2
Q ss_pred CCCccccEEEcCcccccccchhHHHHHHHHcCCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccccchhhHHH
Q 001889 9 VSYWTYDAFLSFRGADTRKSFTSHLYAALNGKGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYASSTWCLDE 88 (1000)
Q Consensus 9 ~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~wc~~E 88 (1000)
+.+++|||||||||+|+|++|++||+++|+++||+||+|++++++|+.|.++|.+||++|+++|||||+||++|.||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCcEEEEEEeecCChhhhhccchHHHHHHHhHHHhhhcHHHHHHHHHHHHHHHhhhCcccccccchhH
Q 001889 89 LVKIVQCKNKNDHRQMVFPIFYDVEPTVVRKQARSFREAFSKHEEVFRENIEKVQKWREALEEVANISGWELKKYRNESE 168 (1000)
Q Consensus 89 l~~~~~~~~~~~~~~~vipif~~v~ps~vr~q~g~~~~~~~~~~~~~~~~~~~v~~wr~al~~~a~~~g~~~~~~~~e~~ 168 (1000)
|++|++|.+.+ +++||||||+|+|++||+|+|+||+||.+|+++ ...+++++||.||+++|+++||++ ..+|++
T Consensus 84 L~~i~~~~~~~--~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~--~~~e~~ 157 (176)
T 3jrn_A 84 LVTIMDFEKKG--SITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCS--GDDDSK 157 (176)
T ss_dssp HHHHHHHHHTT--SCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEEC--CSCHHH
T ss_pred HHHHHhhhccC--CCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceec--CCCHHH
Confidence 99999999877 999999999999999999999999999999987 467899999999999999999999 367999
Q ss_pred HHHHHHHHHhccC-Ccc
Q 001889 169 FIRDIVKAISSKI-PVK 184 (1000)
Q Consensus 169 ~i~~i~~~i~~~l-~~~ 184 (1000)
+|++||++|.+++ +++
T Consensus 158 ~i~~Iv~~v~~~l~~~~ 174 (176)
T 3jrn_A 158 LVDKIANEISNKKTIYA 174 (176)
T ss_dssp HHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 9999999999999 444
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=7.6e-48 Score=383.48 Aligned_cols=171 Identities=39% Similarity=0.760 Sum_probs=158.6
Q ss_pred CCCCccccEEEcCcccccccchhHHHHHHHHcCCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccccchhhHH
Q 001889 8 NVSYWTYDAFLSFRGADTRKSFTSHLYAALNGKGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYASSTWCLD 87 (1000)
Q Consensus 8 ~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~wc~~ 87 (1000)
+.+.++|||||||||+|+|++|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|||||+||++|.||++
T Consensus 30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCcEEEEEEeecCChhhhhccchHHHHHHHhHHHhhhcHHHHHHHHHHHHHHHhhhCcccccccchh
Q 001889 88 ELVKIVQCKNKNDHRQMVFPIFYDVEPTVVRKQARSFREAFSKHEEVFRENIEKVQKWREALEEVANISGWELKKYRNES 167 (1000)
Q Consensus 88 El~~~~~~~~~~~~~~~vipif~~v~ps~vr~q~g~~~~~~~~~~~~~~~~~~~v~~wr~al~~~a~~~g~~~~~~~~e~ 167 (1000)
||++|++|.+.. .+++||||||+|+|++||+|+|+||+||.+|++++. .+++++||.||+++|+++||++.....|+
T Consensus 110 EL~~I~e~~~~~-~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e~ 186 (204)
T 3ozi_A 110 ELAEIVRRQEED-PRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQG 186 (204)
T ss_dssp HHHHHHHHHHHC-TTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCHH
T ss_pred HHHHHHHHHHhc-CCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCCHH
Confidence 999999998752 278999999999999999999999999999998875 48999999999999999999996667788
Q ss_pred HHHHHHHHHHhccC
Q 001889 168 EFIRDIVKAISSKI 181 (1000)
Q Consensus 168 ~~i~~i~~~i~~~l 181 (1000)
+++++|+.+|+.++
T Consensus 187 ~~i~~Iv~di~~kl 200 (204)
T 3ozi_A 187 AIADKVSADIWSHI 200 (204)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999887
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.2e-38 Score=379.20 Aligned_cols=289 Identities=15% Similarity=0.138 Sum_probs=223.6
Q ss_pred ccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHH----HhhcccceEEEEechhH-------hHHh---h
Q 001889 192 VGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYD----TISMNLKGVVFLPMLEK-------NLKK---K 257 (1000)
Q Consensus 192 vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~f~~~~~~~~~~~-------~~~~---~ 257 (1000)
|||+.++++|.++|....+.++++|+|+|||||||||||+++|+ +++.+|+.++|+..... .... +
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999654335689999999999999999999997 68889999999963331 1111 1
Q ss_pred hcc----CCcc-----chhhhHHHHHHHhcCC-CcEEEecCCCCHHHHHHHhcCcCCCCCCceEEEEeCCcchhcccC-C
Q 001889 258 LAD----NSIW-----NVDDGINILASRLQHK-KVLLVIDDVVDIKQLEYLAGKREWFGSGSKIIITSRDEHLLKTHG-M 326 (1000)
Q Consensus 258 ~~~----~~~~-----~~~~~~~~i~~~L~~k-~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~-~ 326 (1000)
... .... +.+.....+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 111 1112 2233478899999996 999999999999876 3322 28999999999999988775 4
Q ss_pred CceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHH-hhcCCCcc
Q 001889 327 DEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFLNGRSLDQWKSTLER-LQIDPPNQ 405 (1000)
Q Consensus 327 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~~-l~~~~~~~ 405 (1000)
..+|+|++|+.+||++||.+++|.... .+.+.+++++|+++|+|+||||+++|+.|+.+. .+|...+.. +...+...
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~ 362 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVG 362 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSST
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHH
Confidence 468999999999999999999987543 356788999999999999999999999998774 333333332 22224567
Q ss_pred hhhHHHhhhcCCChhhHHHhh-----------hhhcccCCcCHHHHHHHHhcC--CCCcc-----------hhhHHhhcc
Q 001889 406 IMSVLEISFNGLQHSEKKIFL-----------DVACFFNLEDRDYVTKVLDGC--DFSPV-----------IGIEVLINK 461 (1000)
Q Consensus 406 i~~~L~~Sy~~L~~~~k~~fl-----------~la~f~~~~~~~~~~~~~~~~--~~~~~-----------~~l~~L~~~ 461 (1000)
+..+|.+||+.|+++.|.||+ ++|+||++++.+ ..+|.+. |+... ..++.|+++
T Consensus 363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~r 440 (549)
T 2a5y_B 363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKR 440 (549)
T ss_dssp TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTB
T ss_pred HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHc
Confidence 889999999999999999999 999999988777 4566665 44321 258999999
Q ss_pred cceEEecC---CchhhhHHHHHHHHHHHhccC
Q 001889 462 SLITILND---NTLWMHDLLQELGQQIVQRQS 490 (1000)
Q Consensus 462 sLi~~~~~---~~~~mHdlv~~~~~~i~~~~~ 490 (1000)
||++.... .+|.|||+||++|++++.+++
T Consensus 441 sLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 441 GALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99987643 369999999999998876553
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.7e-34 Score=374.02 Aligned_cols=294 Identities=18% Similarity=0.270 Sum_probs=232.1
Q ss_pred ccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHH---hhcccce-EEEEechhHh------
Q 001889 184 KSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDT---ISMNLKG-VVFLPMLEKN------ 253 (1000)
Q Consensus 184 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~-~~~~~~~~~~------ 253 (1000)
+|.....||||+.++++|.++|.... +++++|+|+|||||||||||+++|++ ....|.. ++|+......
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~-~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN-GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT-TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc-CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 34556789999999999999996554 67899999999999999999999986 3455654 4566522210
Q ss_pred -HHh---hh------ccCCccchhhhHHHHHHHhcCC--CcEEEecCCCCHHHHHHHhcCcCCCCCCceEEEEeCCcchh
Q 001889 254 -LKK---KL------ADNSIWNVDDGINILASRLQHK--KVLLVIDDVVDIKQLEYLAGKREWFGSGSKIIITSRDEHLL 321 (1000)
Q Consensus 254 -~~~---~~------~~~~~~~~~~~~~~i~~~L~~k--~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 321 (1000)
... .. ......+.+.....++..+.++ |+||||||||+..+++.+ ++||+||||||++.++
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 000 01 1112234556667777777766 999999999999877654 6899999999999988
Q ss_pred cc-cCCCceEecCC-CChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHHhh
Q 001889 322 KT-HGMDEVYKPSS-LNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFLNGRSLDQWKSTLERLQ 399 (1000)
Q Consensus 322 ~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~~l~ 399 (1000)
.. .+....++++. |+.+||++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.+. ..|+..++.+.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~ 346 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQ 346 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHH
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHh
Confidence 44 45667899996 99999999999988433 234456799999999999999999999998765 47999998886
Q ss_pred cCCC-----------cchhhHHHhhhcCCChhhHHHhhhhhcccCCc--CHHHHHHHHhcCCCCcchhhHHhhcccceEE
Q 001889 400 IDPP-----------NQIMSVLEISFNGLQHSEKKIFLDVACFFNLE--DRDYVTKVLDGCDFSPVIGIEVLINKSLITI 466 (1000)
Q Consensus 400 ~~~~-----------~~i~~~L~~Sy~~L~~~~k~~fl~la~f~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~ 466 (1000)
.... ..+..+|.+||+.|++++|.||+++|+|+.+. +.+.+..+|...+......++.|+++||++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~ 426 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFC 426 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEE
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEE
Confidence 5432 34889999999999999999999999999875 5667888887766666778999999999998
Q ss_pred ecCCc---hhhhHHHHHHHHHHHhcc
Q 001889 467 LNDNT---LWMHDLLQELGQQIVQRQ 489 (1000)
Q Consensus 467 ~~~~~---~~mHdlv~~~~~~i~~~~ 489 (1000)
..++. |+||+++|+++++...++
T Consensus 427 ~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 427 NRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ecCCCceEEEecHHHHHHHHhhhhHH
Confidence 76664 999999999998876543
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.98 E-value=5.6e-33 Score=335.13 Aligned_cols=268 Identities=19% Similarity=0.181 Sum_probs=204.6
Q ss_pred ccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHH--Hhhcccce-EEEEechhH-----hHHh---h-
Q 001889 190 KLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYD--TISMNLKG-VVFLPMLEK-----NLKK---K- 257 (1000)
Q Consensus 190 ~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~f~~-~~~~~~~~~-----~~~~---~- 257 (1000)
..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+. ++|+..... .... .
T Consensus 129 ~~VGRe~eLeeL~elL~~~--d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC--CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc--CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4599999999999988643 3478999999999999999999997 47888997 677653211 1111 0
Q ss_pred --hc-----cCC-----ccchhhhHHHHHHHh---cCCCcEEEecCCCCHHHHHHHhcCcCCCCCCceEEEEeCCcchhc
Q 001889 258 --LA-----DNS-----IWNVDDGINILASRL---QHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSKIIITSRDEHLLK 322 (1000)
Q Consensus 258 --~~-----~~~-----~~~~~~~~~~i~~~L---~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 322 (1000)
.. ... ..+.+.....+++.| .++|+||||||||+.++|+.+ ++||+||||||++.++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHH
Confidence 00 000 112334455667665 679999999999999999876 27899999999998875
Q ss_pred ccCCCceEecC------CCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCC--CHHHHHHH
Q 001889 323 THGMDEVYKPS------SLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFLNGR--SLDQWKST 394 (1000)
Q Consensus 323 ~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~~~--~~~~w~~~ 394 (1000)
.+.....|+|+ +|+.+||++||+++. +.. ..++..++ |+|+||||+++|+.|+++ +.++|+..
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~ 350 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV 350 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC
Confidence 43333457777 999999999999884 222 12234444 999999999999999876 77888753
Q ss_pred HHHhhcCCCcchhhHHHhhhcCCChhh-HHHhhhhhcccCCcC--HHHHHHHHhcCCC-CcchhhHHhhcccceEEec-C
Q 001889 395 LERLQIDPPNQIMSVLEISFNGLQHSE-KKIFLDVACFFNLED--RDYVTKVLDGCDF-SPVIGIEVLINKSLITILN-D 469 (1000)
Q Consensus 395 l~~l~~~~~~~i~~~L~~Sy~~L~~~~-k~~fl~la~f~~~~~--~~~~~~~~~~~~~-~~~~~l~~L~~~sLi~~~~-~ 469 (1000)
....+..+|+.||+.|++++ |.||+++|+|+.+.. .+.+..+|.+.+. .....++.|+++||++... .
T Consensus 351 -------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~ 423 (1221)
T 1vt4_I 351 -------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423 (1221)
T ss_dssp -------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSS
T ss_pred -------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCC
Confidence 34679999999999999999 999999999998764 4567888877642 2456789999999999863 4
Q ss_pred CchhhhHHHHHHH
Q 001889 470 NTLWMHDLLQELG 482 (1000)
Q Consensus 470 ~~~~mHdlv~~~~ 482 (1000)
++|+|||++++++
T Consensus 424 ~rYrMHDLllELr 436 (1221)
T 1vt4_I 424 STISIPSIYLELK 436 (1221)
T ss_dssp SEEBCCCHHHHHH
T ss_pred CEEEehHHHHHHh
Confidence 6899999998854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=325.58 Aligned_cols=288 Identities=18% Similarity=0.256 Sum_probs=222.7
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHh---hcccc-eEEEEechhH----hHHh
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTI---SMNLK-GVVFLPMLEK----NLKK 256 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~f~-~~~~~~~~~~----~~~~ 256 (1000)
|..+..||||+.++++|..+|.... ++.++|+|+||||+||||||++++++. ...|. .++|+..... ....
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLK-GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTST-TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhccc-CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHH
Confidence 4456789999999999999997644 568999999999999999999999754 67885 6777753211 0000
Q ss_pred ------hhc------cCCccchhhhHHHHHHHhcC--CCcEEEecCCCCHHHHHHHhcCcCCCCCCceEEEEeCCcchhc
Q 001889 257 ------KLA------DNSIWNVDDGINILASRLQH--KKVLLVIDDVVDIKQLEYLAGKREWFGSGSKIIITSRDEHLLK 322 (1000)
Q Consensus 257 ------~~~------~~~~~~~~~~~~~i~~~L~~--k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 322 (1000)
... .....+.+.....+++.+.+ +++||||||||+..+++.+ ++|++||||||++.++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 011 11223445566777777776 7899999999998876543 67899999999998876
Q ss_pred ccCCCceEec---CCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHHhh
Q 001889 323 THGMDEVYKP---SSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFLNGRSLDQWKSTLERLQ 399 (1000)
Q Consensus 323 ~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~~l~ 399 (1000)
.++ ...|++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.|+... ..|...++.+.
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~ 346 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQ 346 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 543 345665 4899999999999988642 222345789999999999999999999998653 36988888876
Q ss_pred cCC-----------CcchhhHHHhhhcCCChhhHHHhhhhhcccCCc--CHHHHHHHHhcCCCCcchhhHHhhcccceEE
Q 001889 400 IDP-----------PNQIMSVLEISFNGLQHSEKKIFLDVACFFNLE--DRDYVTKVLDGCDFSPVIGIEVLINKSLITI 466 (1000)
Q Consensus 400 ~~~-----------~~~i~~~L~~Sy~~L~~~~k~~fl~la~f~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~ 466 (1000)
... ...+..++..||+.|+++.|.||+++|||+.+. +.+.+..+|..........++.|+++||+..
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~ 426 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFC 426 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEE
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEE
Confidence 543 236889999999999999999999999998865 4566777776554345667999999999987
Q ss_pred ecC---CchhhhHHHHHHHHHH
Q 001889 467 LND---NTLWMHDLLQELGQQI 485 (1000)
Q Consensus 467 ~~~---~~~~mHdlv~~~~~~i 485 (1000)
..+ .+|.||+++|+++++.
T Consensus 427 ~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 427 DRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp EEETTEEEEECCHHHHHHHHHH
T ss_pred ecCCCccEEEEcHHHHHHHHhh
Confidence 643 2699999999999876
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=1.7e-30 Score=255.52 Aligned_cols=121 Identities=26% Similarity=0.380 Sum_probs=112.9
Q ss_pred CCCccccEEEcCcccccccchhHHHHHHHHcCCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccccchhhHHH
Q 001889 9 VSYWTYDAFLSFRGADTRKSFTSHLYAALNGKGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYASSTWCLDE 88 (1000)
Q Consensus 9 ~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~wc~~E 88 (1000)
.+.++|||||||+++| +..|++||+++|+++||+||+|++++.+|+.|.++|.+||++|+++|+|+|++|++|.||++|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 3568999999999999 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCcEEEEEEeecCChhhhhccchHHHHHHHhH
Q 001889 89 LVKIVQCKNKNDHRQMVFPIFYDVEPTVVRKQARSFREAFSKHE 132 (1000)
Q Consensus 89 l~~~~~~~~~~~~~~~vipif~~v~ps~vr~q~g~~~~~~~~~~ 132 (1000)
|..+++|...+ +++||||||+|+|++||+|.|.|+++|....
T Consensus 95 l~~~~~~~~~~--~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 95 LDGLFQLESSG--RSRILPIWHKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp HHHHTCCCTTS--CCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred HHHHHHHHhcC--CCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence 99999987766 7889999999999999999999998877654
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.90 E-value=1.4e-25 Score=216.61 Aligned_cols=136 Identities=15% Similarity=0.259 Sum_probs=97.8
Q ss_pred CCCCCccccEEEcCcccccccchhHHHHHHHHc--CCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccccchh
Q 001889 7 QNVSYWTYDAFLSFRGADTRKSFTSHLYAALNG--KGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYASSTW 84 (1000)
Q Consensus 7 ~~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~w 84 (1000)
|+...++|||||||+++|+ .|+++|+++|++ .|+++|+|++|+.+|+.|.++|.+||++||++|+|+|++|++|.|
T Consensus 4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 3445679999999999998 679999999999 599999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEEEeecCChhh----hhccchHHHHHHHhHHHhhhcHHHHHHHHHHH
Q 001889 85 CLDELVKIVQCKNKNDHRQMVFPIFYDVEPTVV----RKQARSFREAFSKHEEVFRENIEKVQKWREAL 149 (1000)
Q Consensus 85 c~~El~~~~~~~~~~~~~~~vipif~~v~ps~v----r~q~g~~~~~~~~~~~~~~~~~~~v~~wr~al 149 (1000)
|+.|+..++.+.... .++||||||+|+++++ |...... +..++..|....+.|.+|++|+
T Consensus 82 c~~El~~al~~~~~~--~~~vIpv~~~v~~~~lp~~Lr~~~~id---~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 82 CKYQMLQALTEAPGA--EGCTIPLLSGLSRAAYPPELRFMYYVD---GRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHTSSSS--SSEEEEEECSCCGGGSCGGGGGSCCEE---TTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhc--CCcEEEEEcCCChhhCCHHHhCeeeee---ccChHhhHHHHHHHHHHHHHhc
Confidence 999999999887544 3467899999985554 5443211 1234566666778899998765
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.6e-22 Score=226.14 Aligned_cols=205 Identities=31% Similarity=0.525 Sum_probs=180.6
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCC
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 591 (1000)
.+.|+|+++. +..+|..++++++|++|+|++|.+..+|..++.+++|++|+|++|. +..+|..+.++++|++|++++|
T Consensus 83 l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 83 RVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEE
T ss_pred eeEEEccCCC-chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCC
Confidence 4578888874 6688988888999999999999999999999999999999999986 5589999999999999999999
Q ss_pred CCCcccCccccC---------cCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCC
Q 001889 592 SELENVPENMEK---------IESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSG 662 (1000)
Q Consensus 592 ~~l~~lp~~l~~---------l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~ 662 (1000)
..++.+|..+.. +++|++|++++|.+..+|..++.+++|++|++++|... .+++.+..
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-------------~l~~~l~~ 227 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-------------ALGPAIHH 227 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-------------CCCGGGGG
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-------------cCchhhcc
Confidence 999999987765 99999999999999999999999999999999998743 23356788
Q ss_pred CCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCc-cccccccCCCCcCEEEEcCCcCCCccCCCC
Q 001889 663 LCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFV-SLPATISLLFKLEELELEDCKRLQSLPQLP 732 (1000)
Q Consensus 663 l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~ 732 (1000)
+++|+.|+|++|++. +.+|..++.+++|+.|+|++|++. .+|..+..+++|+.|+|++|+.++.+|...
T Consensus 228 l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 228 LPKLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CTTCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CCCCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 999999999999874 468889999999999999998655 888899999999999999999999888654
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=2.7e-20 Score=208.03 Aligned_cols=204 Identities=23% Similarity=0.365 Sum_probs=180.6
Q ss_pred CCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeec
Q 001889 533 MEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDI 612 (1000)
Q Consensus 533 l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 612 (1000)
.++++.|+|+++.+..+|..++.+++|++|+|++|. +..+|..++++++|++|+|++|. +..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 578999999999999999999999999999999987 55999999999999999999974 5589999999999999999
Q ss_pred cccc-ccCCCccccC---------CCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcc
Q 001889 613 SGTA-IRQPPSSIFL---------MKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIP 682 (1000)
Q Consensus 613 ~~~~-i~~lp~~i~~---------L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip 682 (1000)
++|. +..+|..++. +++|++|++++|... .++..+..+++|++|+|++|.+.. +|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-------------~lp~~l~~l~~L~~L~L~~N~l~~--l~ 222 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-------------SLPASIANLQNLKSLKIRNSPLSA--LG 222 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-------------CCCGGGGGCTTCCEEEEESSCCCC--CC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-------------cchHhhcCCCCCCEEEccCCCCCc--Cc
Confidence 9975 4556877664 999999999998742 234668889999999999999975 88
Q ss_pred cccCCCCcCcEEeCCCCCCc-cccccccCCCCcCEEEEcCCcCCCccCCC---CCCccEEeeeCCCCCcccCCcc
Q 001889 683 RDIGNLSSLEELYLSKNSFV-SLPATISLLFKLEELELEDCKRLQSLPQL---PPNIVSVSVNDCASLGKLSDTL 753 (1000)
Q Consensus 683 ~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---~~~L~~L~~~~C~~L~~l~~~~ 753 (1000)
..++.+++|+.|+|++|++. .+|..+..+++|+.|+|++|..++.+|.. .++|+.|++++|..++.+|...
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 88999999999999998766 78889999999999999999999999853 3789999999999999988643
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.83 E-value=6.3e-22 Score=192.57 Aligned_cols=103 Identities=21% Similarity=0.344 Sum_probs=91.4
Q ss_pred CCccccEEEcCcccccccchhHH-HHHHHHcC--CCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccccchhhH
Q 001889 10 SYWTYDAFLSFRGADTRKSFTSH-LYAALNGK--GIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYASSTWCL 86 (1000)
Q Consensus 10 ~~~~~dvFis~~~~D~~~~~~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~wc~ 86 (1000)
..+.|||||||+++|+ .|+.+ |+++|+++ |+++|+|++|+.+|+.+.++|.+||++|+++|+|+|++|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999998 89997 99999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhcCCCCcEEEEEEee-cCChh
Q 001889 87 DELVKIVQC-KNKNDHRQMVFPIFYD-VEPTV 116 (1000)
Q Consensus 87 ~El~~~~~~-~~~~~~~~~vipif~~-v~ps~ 116 (1000)
.|+..++.+ ...+ +++||||||+ +++..
T Consensus 80 ~El~~a~~~~~~~~--~~~vIpv~~~~i~~~~ 109 (149)
T 1fyx_A 80 YELDFSHFRLFDEN--NDAAILILLEPIEKKA 109 (149)
T ss_dssp HHSCCSCCTTCGGG--TTCCEEEESSCCCTTT
T ss_pred HHHHHHHHHHHhcC--CCEEEEEEecCCChhh
Confidence 999988743 3333 6779999996 44433
No 12
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.83 E-value=1.4e-21 Score=192.05 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=92.4
Q ss_pred CCCccccEEEcCcccccccchhHHHHHHHHcC--CCeEEecCCCCCCCCCchHHHHHHHh-hcceeeeecccccccchhh
Q 001889 9 VSYWTYDAFLSFRGADTRKSFTSHLYAALNGK--GIYVFKDDKELERGDSISPRLLKAIE-DSRVSIIVFSQNYASSTWC 85 (1000)
Q Consensus 9 ~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~l~~ai~-~s~~~i~v~S~~y~~s~wc 85 (1000)
...+.|||||||+++|. .|+.+|+++|+++ |+++|+|++++.+|+.|.++|.+||+ +|+++|+|+|++|++|.||
T Consensus 12 ~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 34689999999999996 8999999999985 69999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcEEEEEEeecCC
Q 001889 86 LDELVKIVQCKNKNDHRQMVFPIFYDVEP 114 (1000)
Q Consensus 86 ~~El~~~~~~~~~~~~~~~vipif~~v~p 114 (1000)
+.|+..++++.... ++++||||||+.-+
T Consensus 90 ~~El~~a~~~~~~~-~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGA-HQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTH-HHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHcc-CCCEEEEEEEcccc
Confidence 99999999875321 15679999998754
No 13
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.82 E-value=1.6e-21 Score=194.52 Aligned_cols=104 Identities=23% Similarity=0.364 Sum_probs=89.0
Q ss_pred CCCCccccEEEcCcccccccchhHH-HHHHHHc--CCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccccchh
Q 001889 8 NVSYWTYDAFLSFRGADTRKSFTSH-LYAALNG--KGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYASSTW 84 (1000)
Q Consensus 8 ~~~~~~~dvFis~~~~D~~~~~~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~w 84 (1000)
....+.|||||||+++|+ .||.+ |+++|++ .|+++|+|++|+.+|+.|.++|.+||++|+++|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 346789999999999998 89975 9999998 899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEEEeecCC
Q 001889 85 CLDELVKIVQCKNKNDHRQMVFPIFYDVEP 114 (1000)
Q Consensus 85 c~~El~~~~~~~~~~~~~~~vipif~~v~p 114 (1000)
|+.|+..++.+.... ++++||||||+--|
T Consensus 108 c~~El~~a~~~~~~~-~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 108 CHYEFYFAHHNLFHE-NSDHIILILLEPIP 136 (178)
T ss_dssp GGTHHHHTTCC--------CEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEEEecCCC
Confidence 999999988654221 26789999998544
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=4e-20 Score=205.28 Aligned_cols=228 Identities=21% Similarity=0.278 Sum_probs=187.0
Q ss_pred cccccccCCCcccc--ccchhhcCCCCCCeeeccC-Cccc-ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEE
Q 001889 511 ENTTLVLSGCSKLM--KFPEILRSMEDLSELFLDG-TSIT-EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTL 586 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~--~~p~~~~~l~~L~~L~L~~-~~i~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 586 (1000)
..+.|+|+++.--. .+|..++++++|++|+|++ +.+. .+|..++.+++|++|+|++|.....+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45578999886555 7899999999999999995 7777 788899999999999999988666899999999999999
Q ss_pred EeeCCCCCcccCccccCcCCcceeeccccccc-CCCccccCCC-CCcEEEccCCCCCCCCCCCccccCcccccCCCCCCC
Q 001889 587 CLSGCSELENVPENMEKIESLEELDISGTAIR-QPPSSIFLMK-NLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLC 664 (1000)
Q Consensus 587 ~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~L~-~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~ 664 (1000)
++++|.....+|..+..+++|++|++++|.+. .+|..++.++ +|++|++++|.... ..+..+..++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~------------~~~~~~~~l~ 198 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG------------KIPPTFANLN 198 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE------------ECCGGGGGCC
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec------------cCChHHhCCc
Confidence 99998766688999999999999999999998 6799999998 99999999987321 1234555665
Q ss_pred CCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCC---CCCccEEeee
Q 001889 665 SLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQL---PPNIVSVSVN 741 (1000)
Q Consensus 665 ~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---~~~L~~L~~~ 741 (1000)
|+.|++++|.+. +..|..+..+++|+.|+|++|.++..+..+..+++|+.|+|++|.....+|.. .++|+.|+++
T Consensus 199 -L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 199 -LAFVDLSRNMLE-GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp -CSEEECCSSEEE-ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred -ccEEECcCCccc-CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 999999999874 35778888899999999999988866666888899999999988765566642 3688889998
Q ss_pred CCCCCcccCCc
Q 001889 742 DCASLGKLSDT 752 (1000)
Q Consensus 742 ~C~~L~~l~~~ 752 (1000)
+|.--+.+|..
T Consensus 277 ~N~l~~~ip~~ 287 (313)
T 1ogq_A 277 FNNLCGEIPQG 287 (313)
T ss_dssp SSEEEEECCCS
T ss_pred CCcccccCCCC
Confidence 88655556543
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.4e-20 Score=207.07 Aligned_cols=225 Identities=16% Similarity=0.179 Sum_probs=191.3
Q ss_pred eecccccccCC-CccccccchhhcCCCCCCeeeccCCccc-ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEE
Q 001889 509 LIENTTLVLSG-CSKLMKFPEILRSMEDLSELFLDGTSIT-EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTL 586 (1000)
Q Consensus 509 l~~~~~L~Ls~-~~~l~~~p~~~~~l~~L~~L~L~~~~i~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 586 (1000)
+...++|++++ +.....+|..++++++|++|+|++|.+. .+|..+..+++|++|+|++|.....+|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 45667899996 5444578999999999999999999998 888899999999999999998666899999999999999
Q ss_pred EeeCCCCCcccCccccCcC-Ccceeeccccccc-CCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCC
Q 001889 587 CLSGCSELENVPENMEKIE-SLEELDISGTAIR-QPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLC 664 (1000)
Q Consensus 587 ~Ls~c~~l~~lp~~l~~l~-~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~ 664 (1000)
++++|.....+|..++.+. +|++|++++|.+. ..|..+..++ |+.|++++|.... ..+..+..++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~------------~~~~~~~~l~ 221 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG------------DASVLFGSDK 221 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE------------CCGGGCCTTS
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC------------cCCHHHhcCC
Confidence 9999766568999999998 9999999999998 5688888887 9999999987421 1235678899
Q ss_pred CCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCc-cccccccCCCCcCEEEEcCCcCCCccCCCC--CCccEEeee
Q 001889 665 SLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFV-SLPATISLLFKLEELELEDCKRLQSLPQLP--PNIVSVSVN 741 (1000)
Q Consensus 665 ~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~--~~L~~L~~~ 741 (1000)
+|+.|+|++|.+.. .+..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|+.-..+|... ++|+.|++.
T Consensus 222 ~L~~L~L~~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 222 NTQKIHLAKNSLAF--DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp CCSEEECCSSEECC--BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred CCCEEECCCCceee--ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence 99999999999853 3444888999999999999999 889999999999999999998766788652 566777777
Q ss_pred CCCCCcc
Q 001889 742 DCASLGK 748 (1000)
Q Consensus 742 ~C~~L~~ 748 (1000)
+++.+..
T Consensus 300 ~N~~lc~ 306 (313)
T 1ogq_A 300 NNKCLCG 306 (313)
T ss_dssp SSSEEES
T ss_pred CCCCccC
Confidence 7765544
No 16
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.81 E-value=9.7e-21 Score=185.79 Aligned_cols=103 Identities=22% Similarity=0.321 Sum_probs=90.3
Q ss_pred ccccEEEcCccccc---------ccchhHHHHH-HHH-cCCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccc
Q 001889 12 WTYDAFLSFRGADT---------RKSFTSHLYA-ALN-GKGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYA 80 (1000)
Q Consensus 12 ~~~dvFis~~~~D~---------~~~~~~~l~~-~L~-~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~ 80 (1000)
+.|||||||+++|+ +..||.++.. +|+ +.|+++|+|++|+.+|+.|.++|.+||++||++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999997 3568888665 699 799999999999999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHhhhcCCCCcEEEEEEeecCCh
Q 001889 81 -SSTWCLDELVKIVQCKNKNDHRQMVFPIFYDVEPT 115 (1000)
Q Consensus 81 -~s~wc~~El~~~~~~~~~~~~~~~vipif~~v~ps 115 (1000)
.|.||+.|+..++.+.... ++++||||+|.-.+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~-~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVT-GEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHT-TSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhc-CCCEEEEEEeccccc
Confidence 9999999999999876332 378899999886654
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=4.6e-19 Score=221.21 Aligned_cols=243 Identities=21% Similarity=0.234 Sum_probs=192.7
Q ss_pred eecccccccCCCccccccchhhcCCCCCCeeeccCCccc-ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEE
Q 001889 509 LIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSIT-EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLC 587 (1000)
Q Consensus 509 l~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 587 (1000)
+...+.|++++|.....+|..++.+++|+.|++++|.+. .+|..+..+++|++|+|++|.....+|..+.++++|++|+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 344567888887655577888888888888888888887 6777888888888888888887777888888888899999
Q ss_pred eeCCCCCcccCccccCcCCcceeeccccccc-CCCccccCCCCCcEEEccCCCCCCCCCCCccc----------------
Q 001889 588 LSGCSELENVPENMEKIESLEELDISGTAIR-QPPSSIFLMKNLKELSFRGCKGPPSSTSCSWR---------------- 650 (1000)
Q Consensus 588 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~---------------- 650 (1000)
|++|...+.+|..++.+++|++|+|++|.+. .+|..++.+++|+.|++++|..........+.
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 9888777788888888889999999988887 45888888899999998888632110000000
Q ss_pred ------------------------------------------cCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCC
Q 001889 651 ------------------------------------------FPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNL 688 (1000)
Q Consensus 651 ------------------------------------------~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l 688 (1000)
.-....+..+..+++|+.|+|++|++ .+.+|..++.+
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l-~g~ip~~l~~l 655 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-SGYIPKEIGSM 655 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC-BSCCCGGGGGC
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc-cccCCHHHhcc
Confidence 00011234567788999999999998 46799999999
Q ss_pred CcCcEEeCCCCCCc-cccccccCCCCcCEEEEcCCcCCCccCCC---CCCccEEeeeCCCCCcccCCc
Q 001889 689 SSLEELYLSKNSFV-SLPATISLLFKLEELELEDCKRLQSLPQL---PPNIVSVSVNDCASLGKLSDT 752 (1000)
Q Consensus 689 ~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---~~~L~~L~~~~C~~L~~l~~~ 752 (1000)
++|+.|+|++|.++ .+|..++.+++|+.|+|++|+.-+.+|.. .++|+.|++++|.--+.+|..
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 99999999999999 89999999999999999999887788854 368999999999876777753
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=1.6e-19 Score=220.16 Aligned_cols=208 Identities=13% Similarity=0.239 Sum_probs=163.3
Q ss_pred cccccchhhcCCCCCCeeeccCCcccc------------------cCCccc--cCCCCCEEeccCCCCCcccCcccCCCC
Q 001889 522 KLMKFPEILRSMEDLSELFLDGTSITE------------------VPSSIE--LLTGLQLLNLSDCKDLVRLPSRINGLK 581 (1000)
Q Consensus 522 ~l~~~p~~~~~l~~L~~L~L~~~~i~~------------------lp~si~--~L~~L~~L~L~~c~~l~~lp~~i~~l~ 581 (1000)
.+..+|..++++++|++|+|++|.++. +|..++ ++++|++|+|++|.....+|..+++++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 455689999999999999999999998 999999 999999999999998899999999999
Q ss_pred CCcEEEeeCCCCCc--ccCccccCc------CCcceeecccccccCCCc--cccCCCCCcEEEccCCCCCCCCCCCcccc
Q 001889 582 SLKTLCLSGCSELE--NVPENMEKI------ESLEELDISGTAIRQPPS--SIFLMKNLKELSFRGCKGPPSSTSCSWRF 651 (1000)
Q Consensus 582 ~L~~L~Ls~c~~l~--~lp~~l~~l------~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~c~~~~~~~~~~~~~ 651 (1000)
+|++|++++|..+. .+|..++.+ ++|++|++++|.+..+|. .++.+++|++|++++|....
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g--------- 344 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG--------- 344 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE---------
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc---------
Confidence 99999999987344 689888877 999999999999999998 89999999999999987431
Q ss_pred CcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCc-CcEEeCCCCCCccccccccCCC--CcCEEEEcCCcCCCcc
Q 001889 652 PFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSS-LEELYLSKNSFVSLPATISLLF--KLEELELEDCKRLQSL 728 (1000)
Q Consensus 652 p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~-L~~L~Ls~n~l~~lp~~i~~l~--~L~~L~L~~c~~L~~l 728 (1000)
.++ .+..+++|+.|++++|.+. .+|..+..+++ |+.|+|++|.++.+|..+..++ +|+.|+|++|.....+
T Consensus 345 ---~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 345 ---KLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp ---ECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred ---chh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcc
Confidence 122 4556667777777777765 36666777777 7777777777777776665544 6777777776655444
Q ss_pred CCCC----------CCccEEeeeCCC
Q 001889 729 PQLP----------PNIVSVSVNDCA 744 (1000)
Q Consensus 729 p~l~----------~~L~~L~~~~C~ 744 (1000)
|... ++|+.|++++|.
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred hhhhcccccccccCCCCCEEECcCCc
Confidence 4321 366666666653
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=4.3e-19 Score=220.63 Aligned_cols=212 Identities=16% Similarity=0.253 Sum_probs=181.9
Q ss_pred cccccchhhcCCCCCCeeeccCCcccc------------------cCCccc--cCCCCCEEeccCCCCCcccCcccCCCC
Q 001889 522 KLMKFPEILRSMEDLSELFLDGTSITE------------------VPSSIE--LLTGLQLLNLSDCKDLVRLPSRINGLK 581 (1000)
Q Consensus 522 ~l~~~p~~~~~l~~L~~L~L~~~~i~~------------------lp~si~--~L~~L~~L~L~~c~~l~~lp~~i~~l~ 581 (1000)
.+..+|..++++++|++|+|++|.++. +|..++ .+++|++|+|++|.....+|..+++++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 455689999999999999999999998 999988 999999999999998899999999999
Q ss_pred CCcEEEeeCCCCCc--ccCccccCcC-------CcceeecccccccCCCc--cccCCCCCcEEEccCCCCCCCCCCCccc
Q 001889 582 SLKTLCLSGCSELE--NVPENMEKIE-------SLEELDISGTAIRQPPS--SIFLMKNLKELSFRGCKGPPSSTSCSWR 650 (1000)
Q Consensus 582 ~L~~L~Ls~c~~l~--~lp~~l~~l~-------~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~c~~~~~~~~~~~~ 650 (1000)
+|++|+|++|..+. .+|..++++. +|++|+|++|.+..+|. .++.+++|+.|++++|...
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--------- 586 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--------- 586 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC---------
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc---------
Confidence 99999999987354 5888777665 99999999999999998 8999999999999998743
Q ss_pred cCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCc-CcEEeCCCCCCccccccccCCCC--cCEEEEcCCcCCCc
Q 001889 651 FPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSS-LEELYLSKNSFVSLPATISLLFK--LEELELEDCKRLQS 727 (1000)
Q Consensus 651 ~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~-L~~L~Ls~n~l~~lp~~i~~l~~--L~~L~L~~c~~L~~ 727 (1000)
.+ +.+..+++|+.|+|++|.+. .+|..+..+++ |+.|+|++|.++.+|..+..++. |+.|+|++|.....
T Consensus 587 ----~l-p~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 587 ----HL-EAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp ----BC-CCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred ----cc-hhhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCc
Confidence 22 36888999999999999987 48989999998 99999999999999988877654 99999999887666
Q ss_pred cCCCC--------CCccEEeeeCCCCCcccC
Q 001889 728 LPQLP--------PNIVSVSVNDCASLGKLS 750 (1000)
Q Consensus 728 lp~l~--------~~L~~L~~~~C~~L~~l~ 750 (1000)
+|.++ ++|+.|++++|. +..+|
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp 689 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNE-IQKFP 689 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSC-CCSCC
T ss_pred cccchhhhccccCCCcCEEEccCCc-CCccC
Confidence 66554 478888888875 33444
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.3e-18 Score=192.31 Aligned_cols=175 Identities=26% Similarity=0.299 Sum_probs=78.4
Q ss_pred CCCCeeeccCCcccccCCc-cccCCCCCEEeccCCCCCccc---CcccCCCCCCcEEEeeCCCCCcccCccccCcCCcce
Q 001889 534 EDLSELFLDGTSITEVPSS-IELLTGLQLLNLSDCKDLVRL---PSRINGLKSLKTLCLSGCSELENVPENMEKIESLEE 609 (1000)
Q Consensus 534 ~~L~~L~L~~~~i~~lp~s-i~~L~~L~~L~L~~c~~l~~l---p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 609 (1000)
++|++|+|+++.++.+|.. +..+++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 3455555555555544443 3445555555555443 2211 333334455555555543 23344444445555555
Q ss_pred eecccccccCCCc--cccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCC
Q 001889 610 LDISGTAIRQPPS--SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGN 687 (1000)
Q Consensus 610 L~L~~~~i~~lp~--~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~ 687 (1000)
|++++|.+..++. .+..+++|++|++++|..... .+..+..+++|++|++++|.+....+|..+..
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 173 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC------------STTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCcc------------chhhcccCcCCCEEECCCCccccccchhHHhh
Confidence 5555555544432 344455555555554432110 11223444444444444444432234444444
Q ss_pred CCcCcEEeCCCCCCccc-cccccCCCCcCEEEEcCC
Q 001889 688 LSSLEELYLSKNSFVSL-PATISLLFKLEELELEDC 722 (1000)
Q Consensus 688 l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c 722 (1000)
+++|+.|+|++|.++.+ |..+..+++|+.|+|++|
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence 44444444444444433 334444444444444444
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=7.2e-19 Score=218.67 Aligned_cols=222 Identities=19% Similarity=0.248 Sum_probs=189.5
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeec-cCCc---------------------------------------------
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFL-DGTS--------------------------------------------- 545 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L-~~~~--------------------------------------------- 545 (1000)
.+.|+|+++.-...+|+.++++++|+.|+| ++|.
T Consensus 325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence 457899998877789999999999999999 5442
Q ss_pred --------------------------------ccccCCccccCCCCCEEeccCCCCCc-----------------ccCcc
Q 001889 546 --------------------------------ITEVPSSIELLTGLQLLNLSDCKDLV-----------------RLPSR 576 (1000)
Q Consensus 546 --------------------------------i~~lp~si~~L~~L~~L~L~~c~~l~-----------------~lp~~ 576 (1000)
++.+|..+++|++|++|+|++|.... .+|..
T Consensus 405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~ 484 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484 (876)
T ss_dssp HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence 22388899999999999999988544 29999
Q ss_pred cC--CCCCCcEEEeeCCCCCcccCccccCcCCcceeeccccc-ccC--CCccccCCC-------CCcEEEccCCCCCCCC
Q 001889 577 IN--GLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTA-IRQ--PPSSIFLMK-------NLKELSFRGCKGPPSS 644 (1000)
Q Consensus 577 i~--~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~-i~~--lp~~i~~L~-------~L~~L~L~~c~~~~~~ 644 (1000)
++ ++++|++|+|++|...+.+|..++++++|++|+|++|. ++. +|..++.++ +|+.|++++|...
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--- 561 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--- 561 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---
T ss_pred hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---
Confidence 88 99999999999999899999999999999999999998 875 687776665 9999999999743
Q ss_pred CCCccccCcccccC--CCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCC-cCEEEEcC
Q 001889 645 TSCSWRFPFNLMLP--SLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFK-LEELELED 721 (1000)
Q Consensus 645 ~~~~~~~p~~~~~~--~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~-L~~L~L~~ 721 (1000)
.++. .+.++++|+.|+|++|++. .+| .++.+++|+.|+|++|.+..+|..+..+++ |+.|+|++
T Consensus 562 ----------~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 562 ----------EFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp ----------BCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred ----------ccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence 2345 6889999999999999997 588 899999999999999999999999999999 99999999
Q ss_pred CcCCCccCCCC-----CCccEEeeeCCCCCcccC
Q 001889 722 CKRLQSLPQLP-----PNIVSVSVNDCASLGKLS 750 (1000)
Q Consensus 722 c~~L~~lp~l~-----~~L~~L~~~~C~~L~~l~ 750 (1000)
|. +..+|... ++|+.|++++|.--..+|
T Consensus 629 N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 629 NK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp SC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred CC-CCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 87 55788543 349999999986544433
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=4.3e-18 Score=186.22 Aligned_cols=214 Identities=23% Similarity=0.268 Sum_probs=172.1
Q ss_pred cccccCCCccccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCC
Q 001889 513 TTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 513 ~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 591 (1000)
++++.++. .+..+|..+ .++|++|+|+++.+..++. .+..+++|++|+|++|......|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 35666553 467777643 5789999999999998875 5889999999999998744444778899999999999998
Q ss_pred CCCccc-CccccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCee
Q 001889 592 SELENV-PENMEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKL 669 (1000)
Q Consensus 592 ~~l~~l-p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L 669 (1000)
..+..+ |..+..+++|++|++++|.+..+ |..+..+++|++|++++|..... ....+..+++|+.|
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL------------PDDTFRDLGNLTHL 158 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEE
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc------------CHhHhccCCCccEE
Confidence 756666 67889999999999999999888 56788899999999999874321 11347788999999
Q ss_pred cCCCCCCCCCCccc-ccCCCCcCcEEeCCCCCCccc-cccccCCCCcCEEEEcCCcCCCccC----CCCCCccEEeeeCC
Q 001889 670 DLSDCNIQEGAIPR-DIGNLSSLEELYLSKNSFVSL-PATISLLFKLEELELEDCKRLQSLP----QLPPNIVSVSVNDC 743 (1000)
Q Consensus 670 ~Ls~~~l~~~~ip~-~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp----~l~~~L~~L~~~~C 743 (1000)
+|++|.+.. +|. .+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|. +..+| .-.++|+.|+++++
T Consensus 159 ~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 159 FLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSS
T ss_pred ECCCCcccc--cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCC
Confidence 999998864 554 588899999999999999976 7788999999999999985 44454 22478888888877
Q ss_pred C
Q 001889 744 A 744 (1000)
Q Consensus 744 ~ 744 (1000)
+
T Consensus 236 ~ 236 (285)
T 1ozn_A 236 P 236 (285)
T ss_dssp C
T ss_pred C
Confidence 5
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=5e-19 Score=215.90 Aligned_cols=224 Identities=17% Similarity=0.253 Sum_probs=194.0
Q ss_pred cccccccCCCccccccchhhcCCCCCCeeeccCCc---------------------------------------------
Q 001889 511 ENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTS--------------------------------------------- 545 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~--------------------------------------------- 545 (1000)
..+.|+|+++.-...+|..++++++|++|+|++|.
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 34579999988777899999999999999998873
Q ss_pred ---------------------------------ccccCCccccCCCCCEEeccCCCCCcc-----------------cCc
Q 001889 546 ---------------------------------ITEVPSSIELLTGLQLLNLSDCKDLVR-----------------LPS 575 (1000)
Q Consensus 546 ---------------------------------i~~lp~si~~L~~L~~L~L~~c~~l~~-----------------lp~ 575 (1000)
++.+|..++++++|++|+|++|..... +|.
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~ 241 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch
Confidence 335888899999999999999984443 999
Q ss_pred ccC--CCCCCcEEEeeCCCCCcccCccccCcCCcceeeccccc-ccC--CCccccCC------CCCcEEEccCCCCCCCC
Q 001889 576 RIN--GLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTA-IRQ--PPSSIFLM------KNLKELSFRGCKGPPSS 644 (1000)
Q Consensus 576 ~i~--~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~-i~~--lp~~i~~L------~~L~~L~L~~c~~~~~~ 644 (1000)
.++ ++++|++|+|++|...+.+|..++++++|++|++++|. ++. +|..++.+ ++|++|++++|...
T Consensus 242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--- 318 (636)
T 4eco_A 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--- 318 (636)
T ss_dssp CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS---
T ss_pred hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC---
Confidence 999 99999999999999899999999999999999999998 885 78888876 99999999999743
Q ss_pred CCCccccCcccccC--CCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCC-cCEEEEcC
Q 001889 645 TSCSWRFPFNLMLP--SLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFK-LEELELED 721 (1000)
Q Consensus 645 ~~~~~~~p~~~~~~--~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~-L~~L~L~~ 721 (1000)
.++. .++.+++|+.|++++|.+. +.+| .++.+++|+.|+|++|.++.+|..+..+++ |+.|+|++
T Consensus 319 ----------~ip~~~~l~~l~~L~~L~L~~N~l~-g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 319 ----------TFPVETSLQKMKKLGMLECLYNQLE-GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp ----------SCCCHHHHTTCTTCCEEECCSCCCE-EECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred ----------ccCchhhhccCCCCCEEeCcCCcCc-cchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 2345 6889999999999999985 4588 899999999999999999999999999999 99999999
Q ss_pred CcCCCccCCCC-----CCccEEeeeCCCCCcccC
Q 001889 722 CKRLQSLPQLP-----PNIVSVSVNDCASLGKLS 750 (1000)
Q Consensus 722 c~~L~~lp~l~-----~~L~~L~~~~C~~L~~l~ 750 (1000)
|. +..+|... ++|+.|++++|.--..+|
T Consensus 387 N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 387 NK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp SC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred Cc-CcccchhhhhcccCccCEEECcCCcCCCcch
Confidence 87 55788542 379999999987554444
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=5.1e-18 Score=194.52 Aligned_cols=234 Identities=17% Similarity=0.161 Sum_probs=139.9
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcc-cCCCCCCcEEE
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSR-INGLKSLKTLC 587 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~ 587 (1000)
.+.++|++++|......|..+..+++|++|+|++|.+..+|+ .++.+++|++|+|++|. +..+|.. +.++++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEE
Confidence 344455565554222223355556666666666666655543 25556666666666554 4445544 25566666666
Q ss_pred eeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCC---CCC------------------
Q 001889 588 LSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPS---STS------------------ 646 (1000)
Q Consensus 588 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~---~~~------------------ 646 (1000)
+++|......|..+..+++|++|++++|.+..++ +..+++|+.|++++|..... ...
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~ 225 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence 6654333333344555666666666666555442 22333333333333321100 000
Q ss_pred ---Ccccc---CcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEc
Q 001889 647 ---CSWRF---PFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELE 720 (1000)
Q Consensus 647 ---~~~~~---p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~ 720 (1000)
....+ .+.. .+.+..+++|++|++++|.+.. ..|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|+
T Consensus 226 ~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 226 VELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp SSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCE-EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECC
T ss_pred ccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCC-cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECC
Confidence 00000 0111 1346778999999999999854 45788999999999999999999999988999999999999
Q ss_pred CCcCCCccCCC---CCCccEEeeeCCCCCcccC
Q 001889 721 DCKRLQSLPQL---PPNIVSVSVNDCASLGKLS 750 (1000)
Q Consensus 721 ~c~~L~~lp~l---~~~L~~L~~~~C~~L~~l~ 750 (1000)
+|+ +..+|.. .++|+.|++++|. +..++
T Consensus 304 ~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 304 HNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp SSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred CCc-ceecCccccccCcCCEEECCCCc-cceeC
Confidence 984 5566632 2789999999986 44443
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=1.2e-17 Score=182.64 Aligned_cols=201 Identities=25% Similarity=0.361 Sum_probs=157.4
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCccc-CcccCCCCCCcEEE
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRL-PSRINGLKSLKTLC 587 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~ 587 (1000)
...+.|+++++..-...+..+..+++|++|+|++|.+..+ |..+..+++|++|+|++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 3556788888754333445678889999999999888877 667888899999999988756666 66788889999999
Q ss_pred eeCCCCCcccCccccCcCCcceeecccccccCCCc-cccCCCCCcEEEccCCCCCCCCCCCccccCccccc-CCCCCCCC
Q 001889 588 LSGCSELENVPENMEKIESLEELDISGTAIRQPPS-SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLML-PSLSGLCS 665 (1000)
Q Consensus 588 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~-~~l~~l~~ 665 (1000)
+++|......|..+..+++|++|++++|.+..+|. .+..+++|++|++++|... .++ ..+..+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------~~~~~~~~~l~~ 178 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-------------SVPERAFRGLHS 178 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------EECTTTTTTCTT
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-------------ccCHHHhcCccc
Confidence 98876555556778888999999999998888864 4778889999999888632 122 24777888
Q ss_pred CCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCcC
Q 001889 666 LTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELEDCKR 724 (1000)
Q Consensus 666 L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 724 (1000)
|+.|++++|.+.. ..|..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+.
T Consensus 179 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 179 LDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cCEEECCCCcccc-cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 9999999988753 457788888999999999998888775 478889999999988764
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=4.8e-18 Score=205.86 Aligned_cols=229 Identities=17% Similarity=0.156 Sum_probs=146.8
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCc-cccCCCCCEEeccCCCCCcccCcc-cCCCCCCcEEE
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSS-IELLTGLQLLNLSDCKDLVRLPSR-INGLKSLKTLC 587 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~ 587 (1000)
.+.++|+|++|......|..++.+++|++|+|++|.+..+|+. ++.+++|++|+|++|. +..+|.. +.++++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEE
Confidence 4445666666543333334566666666666666666655543 4666666666666654 4455544 35666666666
Q ss_pred eeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCC---CC-------------------
Q 001889 588 LSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPS---ST------------------- 645 (1000)
Q Consensus 588 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~---~~------------------- 645 (1000)
|++|......|..++.+++|++|++++|.+..++ ++.+++|+.|++++|..... ..
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 6665444444445666666666666666666553 23334444444433321100 00
Q ss_pred --CCcccc---CcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEc
Q 001889 646 --SCSWRF---PFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELE 720 (1000)
Q Consensus 646 --~~~~~~---p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~ 720 (1000)
...+.+ .+.. ++.+..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+|..+..+++|+.|+|+
T Consensus 232 ~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 232 VELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp SCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECC
T ss_pred CCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECC
Confidence 000000 0011 245778899999999999985 456889999999999999999999999999999999999999
Q ss_pred CCcCCCccCCC---CCCccEEeeeCCC
Q 001889 721 DCKRLQSLPQL---PPNIVSVSVNDCA 744 (1000)
Q Consensus 721 ~c~~L~~lp~l---~~~L~~L~~~~C~ 744 (1000)
+|. +..+|.. .++|+.|++++|.
T Consensus 310 ~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 310 HNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp SSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCC-CCccCcccccCCCCCEEECCCCC
Confidence 985 4466632 3789999999986
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=3e-18 Score=213.86 Aligned_cols=229 Identities=22% Similarity=0.208 Sum_probs=189.8
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCccc-ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEe
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSIT-EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCL 588 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 588 (1000)
...+.|++++|.....+|..++++++|++|+|++|.+. .+|..++.+++|+.|+|++|.....+|..+..+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 34567888888766678888888999999999999887 67888999999999999998877788988989999999999
Q ss_pred eCCCCCcccCccccCcCCcceeeccccccc-CCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCC
Q 001889 589 SGCSELENVPENMEKIESLEELDISGTAIR-QPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLT 667 (1000)
Q Consensus 589 s~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~ 667 (1000)
++|...+.+|..++++++|++|++++|.+. .+|..++.+++|++|++++|.... .++..+..+++|+
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~------------~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG------------NIPAELGDCRSLI 541 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE------------ECCGGGGGCTTCC
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC------------cCCHHHcCCCCCC
Confidence 998777788989999999999999999988 458889999999999999987421 2346678889999
Q ss_pred eecCCCCCCCCCCcc-----------------------------------------------------------------
Q 001889 668 KLDLSDCNIQEGAIP----------------------------------------------------------------- 682 (1000)
Q Consensus 668 ~L~Ls~~~l~~~~ip----------------------------------------------------------------- 682 (1000)
.|++++|++. +.+|
T Consensus 542 ~L~Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 542 WLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp EEECCSSEEE-SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred EEECCCCccC-CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 9999988763 2233
Q ss_pred -----cccCCCCcCcEEeCCCCCCc-cccccccCCCCcCEEEEcCCcCCCccCCC---CCCccEEeeeCCCCCcccCC
Q 001889 683 -----RDIGNLSSLEELYLSKNSFV-SLPATISLLFKLEELELEDCKRLQSLPQL---PPNIVSVSVNDCASLGKLSD 751 (1000)
Q Consensus 683 -----~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---~~~L~~L~~~~C~~L~~l~~ 751 (1000)
..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|..-..+|.. .++|+.|++++|.--+.+|.
T Consensus 621 ~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 34555788999999999998 78999999999999999999877788843 37899999999876666664
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.4e-17 Score=194.86 Aligned_cols=174 Identities=28% Similarity=0.336 Sum_probs=80.5
Q ss_pred CCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCc-cccCcCCcceee
Q 001889 534 EDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPE-NMEKIESLEELD 611 (1000)
Q Consensus 534 ~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~ 611 (1000)
++|++|+|++|.|..+ |..+..+++|++|+|++|......|..+.++++|++|+|++|. +..+|. .+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence 3455555555555544 2334555555555555544222223444455555555555532 333332 244555555555
Q ss_pred cccccccCCCc-cccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCc
Q 001889 612 ISGTAIRQPPS-SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSS 690 (1000)
Q Consensus 612 L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~ 690 (1000)
|++|.+..+|. .+..+++|+.|++++|...... ....+.++++|+.|+|++|++.. +| .+..+++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i-----------~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~ 219 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-----------SEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPLVG 219 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----------CTTTTTTCTTCCEEECTTSCCSS--CC-CCTTCTT
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-----------ChhhccCCCCCCEEECCCCcccc--cc-ccccccc
Confidence 55555554432 3444555555555544322110 01124444555555555555433 32 2444555
Q ss_pred CcEEeCCCCCCccc-cccccCCCCcCEEEEcCC
Q 001889 691 LEELYLSKNSFVSL-PATISLLFKLEELELEDC 722 (1000)
Q Consensus 691 L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c 722 (1000)
|+.|+|++|.++.+ |..+..+++|+.|+|++|
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred ccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 55555555555543 334455555555555544
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.76 E-value=1.6e-17 Score=186.99 Aligned_cols=209 Identities=19% Similarity=0.312 Sum_probs=143.6
Q ss_pred eecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEe
Q 001889 509 LIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCL 588 (1000)
Q Consensus 509 l~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 588 (1000)
+.+.++|++++| .+..+|. +..+++|++|++++|.+..+| .+..+++|++|++++|. +..+|. +..+++|++|++
T Consensus 65 ~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 65 LTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNL 139 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEEC
T ss_pred cCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEEC
Confidence 445667888877 4555666 667888888888888887775 47888888888888876 555555 678888888888
Q ss_pred eCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCe
Q 001889 589 SGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTK 668 (1000)
Q Consensus 589 s~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~ 668 (1000)
++|..+..++. +..+++|++|++++|.+..++. +..+++|+.|++++|..... +.+..+++|+.
T Consensus 140 ~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--------------~~~~~l~~L~~ 203 (347)
T 4fmz_A 140 GANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI--------------SPLASLTSLHY 203 (347)
T ss_dssp TTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCC--------------GGGGGCTTCCE
T ss_pred CCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccc--------------ccccCCCccce
Confidence 88766665554 7788888888888888777755 77788888888888764321 12455666777
Q ss_pred ecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCC--CCCCccEEeeeCC
Q 001889 669 LDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQ--LPPNIVSVSVNDC 743 (1000)
Q Consensus 669 L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~--l~~~L~~L~~~~C 743 (1000)
|++++|.+.. ++. +..+++|+.|+|++|.++.+|. +..+++|+.|+|++|. +..++. .+++|+.|++++|
T Consensus 204 L~l~~n~l~~--~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 204 FTAYVNQITD--ITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp EECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS
T ss_pred eecccCCCCC--Cch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCC
Confidence 7777766643 222 5666677777777777766665 6667777777777663 344442 2356777777666
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=2.4e-17 Score=184.40 Aligned_cols=213 Identities=21% Similarity=0.269 Sum_probs=141.0
Q ss_pred cccccccCCCccccccc-hhhcCCCCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEe
Q 001889 511 ENTTLVLSGCSKLMKFP-EILRSMEDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCL 588 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p-~~~~~l~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 588 (1000)
..+.|+++++. +..+| ..++++++|++|+|++|.+..+ |..++.+++|++|+|++|. +..+|..+. ++|++|++
T Consensus 53 ~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEEC
Confidence 34467777764 44443 3677788888888888887766 6667788888888888765 566776653 67888888
Q ss_pred eCCCCCcccCccccCcCCcceeecccccccC---CCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCC
Q 001889 589 SGCSELENVPENMEKIESLEELDISGTAIRQ---PPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCS 665 (1000)
Q Consensus 589 s~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~---lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~ 665 (1000)
++|......+..+.++++|++|++++|.+.. .+..+..+++|++|++++|.... ++..+ .++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------l~~~~--~~~ 193 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-------------IPQGL--PPS 193 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-------------CCSSC--CTT
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-------------CCccc--ccc
Confidence 7754333333456777888888888877753 35667777888888887776321 11222 156
Q ss_pred CCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCcCCCccCCC---CCCccEEeee
Q 001889 666 LTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELEDCKRLQSLPQL---PPNIVSVSVN 741 (1000)
Q Consensus 666 L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l---~~~L~~L~~~ 741 (1000)
|+.|++++|.+.. ..|..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|. +..+|.. .++|+.|+++
T Consensus 194 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 194 LTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp CSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECC
T ss_pred CCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECC
Confidence 7777777777643 335667777777777777777776654 56777777777777763 4455532 2567777777
Q ss_pred CCC
Q 001889 742 DCA 744 (1000)
Q Consensus 742 ~C~ 744 (1000)
+|.
T Consensus 272 ~N~ 274 (330)
T 1xku_A 272 NNN 274 (330)
T ss_dssp SSC
T ss_pred CCc
Confidence 663
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=1.4e-17 Score=190.95 Aligned_cols=235 Identities=17% Similarity=0.204 Sum_probs=178.2
Q ss_pred ecccccccCCCccccccch-hhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEE
Q 001889 510 IENTTLVLSGCSKLMKFPE-ILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLC 587 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~-~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 587 (1000)
.+.+.|+++++. +..+|. .+..+++|++|+|+++.+..++. .+..+++|++|+|++|......|..+.++++|++|+
T Consensus 45 ~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 445578888764 666766 46789999999999999998875 799999999999999885444566689999999999
Q ss_pred eeCCCCCcccCcc-ccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCC--Ccc---cc---Ccc--c
Q 001889 588 LSGCSELENVPEN-MEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTS--CSW---RF---PFN--L 655 (1000)
Q Consensus 588 Ls~c~~l~~lp~~-l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~--~~~---~~---p~~--~ 655 (1000)
+++| .+..+|.. +.++++|++|++++|.+..+ |..+..+++|++|++++|........ ... .+ .+. .
T Consensus 124 L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 124 LERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred CCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 9996 56678766 58999999999999999988 45688999999999999975432100 000 00 000 0
Q ss_pred ccCC---------------CCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccc-cccccCCCCcCEEEE
Q 001889 656 MLPS---------------LSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSL-PATISLLFKLEELEL 719 (1000)
Q Consensus 656 ~~~~---------------l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L 719 (1000)
.+.. ...+++|+.|++++|.+.. . ..+..+++|+.|+|++|.+..+ |..+..+++|+.|+|
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCcc--c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 0000 0123467888888887754 2 5688899999999999999966 778999999999999
Q ss_pred cCCcCCCccCC---CCCCccEEeeeCCCCCcccCC
Q 001889 720 EDCKRLQSLPQ---LPPNIVSVSVNDCASLGKLSD 751 (1000)
Q Consensus 720 ~~c~~L~~lp~---l~~~L~~L~~~~C~~L~~l~~ 751 (1000)
++|. ++.+|. ..++|+.|++++| .+..++.
T Consensus 280 ~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 312 (390)
T 3o6n_A 280 SNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVER 312 (390)
T ss_dssp CSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred CCCc-CcccCcccCCCCCCCEEECCCC-cceecCc
Confidence 9975 566663 2479999999998 4555553
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=9.6e-18 Score=178.37 Aligned_cols=207 Identities=18% Similarity=0.254 Sum_probs=170.0
Q ss_pred CccccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCc-ccCCCCCCcEEEeeCCCCCccc
Q 001889 520 CSKLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKTLCLSGCSELENV 597 (1000)
Q Consensus 520 ~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~l 597 (1000)
|..+..+|. + .++|++|++++|.++.+|+ .+..+++|++|++++|..+..+|. .+.++++|++|++++|+.+..+
T Consensus 20 c~~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 445778888 4 3589999999999999987 688999999999999876777765 6789999999999986677777
Q ss_pred C-ccccCcCCcceeecccccccCCCccccCCCCCc---EEEccCC-CCCCCCCCCccccCccccc-CCCCCCCCCC-eec
Q 001889 598 P-ENMEKIESLEELDISGTAIRQPPSSIFLMKNLK---ELSFRGC-KGPPSSTSCSWRFPFNLML-PSLSGLCSLT-KLD 670 (1000)
Q Consensus 598 p-~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~---~L~L~~c-~~~~~~~~~~~~~p~~~~~-~~l~~l~~L~-~L~ 670 (1000)
| ..+..+++|++|++++|.+..+|. +..+++|+ +|++++| ... .++ ..+.++++|+ .|+
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~-------------~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMT-------------SIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCC-------------EECTTTTTTTBSSEEEEE
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchh-------------hcCcccccchhcceeEEE
Confidence 6 568899999999999999999987 88888888 9999998 422 122 3478899999 999
Q ss_pred CCCCCCCCCCcccccCCCCcCcEEeCCCC-CCccccc-cccCC-CCcCEEEEcCCcCCCccCC-CCCCccEEeeeCCCCC
Q 001889 671 LSDCNIQEGAIPRDIGNLSSLEELYLSKN-SFVSLPA-TISLL-FKLEELELEDCKRLQSLPQ-LPPNIVSVSVNDCASL 746 (1000)
Q Consensus 671 Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n-~l~~lp~-~i~~l-~~L~~L~L~~c~~L~~lp~-l~~~L~~L~~~~C~~L 746 (1000)
+++|.+.. +|......++|+.|+|++| .++.+|. .+..+ ++|+.|+|++|+ ++.+|. ..++|+.|++.++..|
T Consensus 163 l~~n~l~~--i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 163 LYNNGFTS--VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp CCSCCCCE--ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred cCCCCCcc--cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence 99999864 7766555589999999999 5998865 57888 999999999964 567774 4689999999888654
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=2.8e-17 Score=183.73 Aligned_cols=219 Identities=22% Similarity=0.244 Sum_probs=179.9
Q ss_pred eeecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEE
Q 001889 508 VLIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLC 587 (1000)
Q Consensus 508 vl~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 587 (1000)
.+.+.++|++++|......|..++.+++|++|+|++|.++.+|..+. ++|++|++++|......+..+.++++|++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 34567789999986555558889999999999999999999998765 8999999999874444445688999999999
Q ss_pred eeCCCCCc--ccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCC
Q 001889 588 LSGCSELE--NVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCS 665 (1000)
Q Consensus 588 Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~ 665 (1000)
+++|.... ..+..+..+++|++|++++|.+..+|..+. ++|++|++++|..... .+..+..+++
T Consensus 152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~------------~~~~~~~l~~ 217 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKV------------DAASLKGLNN 217 (330)
T ss_dssp CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEE------------CTGGGTTCTT
T ss_pred CCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCcc------------CHHHhcCCCC
Confidence 99976532 567788999999999999999999987765 8999999999874221 1256788999
Q ss_pred CCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCC----------CCCCc
Q 001889 666 LTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQ----------LPPNI 735 (1000)
Q Consensus 666 L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~----------l~~~L 735 (1000)
|+.|+|++|.+.. ..+..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+ ++.+|. ..+++
T Consensus 218 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 218 LAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp CCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCC
T ss_pred CCEEECCCCcCce-eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccc
Confidence 9999999999864 34457889999999999999999999999999999999999975 555542 12567
Q ss_pred cEEeeeCCC
Q 001889 736 VSVSVNDCA 744 (1000)
Q Consensus 736 ~~L~~~~C~ 744 (1000)
+.|++.+++
T Consensus 296 ~~l~l~~N~ 304 (330)
T 1xku_A 296 SGVSLFSNP 304 (330)
T ss_dssp SEEECCSSS
T ss_pred cceEeecCc
Confidence 788888776
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=3.7e-17 Score=182.97 Aligned_cols=227 Identities=19% Similarity=0.256 Sum_probs=134.0
Q ss_pred cccccccCCCccccccchhhcCCCCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEee
Q 001889 511 ENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLS 589 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 589 (1000)
..+.|++++|.-....|..+.++++|++|+|++|.+..+ |..++.+++|++|+|++|. +..+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECC
Confidence 344667776643333344566677777777777777665 4556777777777777664 456666553 667777777
Q ss_pred CCCCCcccC-ccccCcCCcceeecccccccC---CCccccCCCCCcEEEccCCCCCCCCCC-----Ccccc---Ccccc-
Q 001889 590 GCSELENVP-ENMEKIESLEELDISGTAIRQ---PPSSIFLMKNLKELSFRGCKGPPSSTS-----CSWRF---PFNLM- 656 (1000)
Q Consensus 590 ~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~---lp~~i~~L~~L~~L~L~~c~~~~~~~~-----~~~~~---p~~~~- 656 (1000)
+|. +..+| ..+..+++|++|++++|.+.. .|..+..+ +|++|++++|....-... ....+ .+...
T Consensus 132 ~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 132 DNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE 209 (332)
T ss_dssp SSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCC
T ss_pred CCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccC
Confidence 643 33444 346667777777777776642 24445555 666666666542211000 00000 01111
Q ss_pred cCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCC-----C
Q 001889 657 LPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQ-----L 731 (1000)
Q Consensus 657 ~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-----l 731 (1000)
+..+..+++|+.|+|++|.+.. ..+..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+ ++.+|. .
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~ 287 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV 287 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS
T ss_pred HHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHcccc
Confidence 2346667777777777777643 23346677777777777777777777777777777777777764 444431 1
Q ss_pred -----CCCccEEeeeCCC
Q 001889 732 -----PPNIVSVSVNDCA 744 (1000)
Q Consensus 732 -----~~~L~~L~~~~C~ 744 (1000)
.++|+.|++.+++
T Consensus 288 ~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SCCSSSCCBSEEECCSSS
T ss_pred ccccccccccceEeecCc
Confidence 2456677777665
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=4.5e-17 Score=189.74 Aligned_cols=192 Identities=23% Similarity=0.332 Sum_probs=82.5
Q ss_pred ccccCCCccccccchhhcCCCCCCeeeccCCcccccC-CccccCCCCCEEeccCCCCCcccCc-ccCCCCCCcEEEeeCC
Q 001889 514 TLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVP-SSIELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKTLCLSGC 591 (1000)
Q Consensus 514 ~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp-~si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c 591 (1000)
.|+|+++..-...+..+.++++|++|+|++|.+..++ ..+..+++|++|+|++|. +..+|. .+..+++|++|+|++|
T Consensus 68 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp EEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSC
T ss_pred EEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCC
Confidence 4444444322222334444445555555544444433 234444455555554443 233332 3444444555555443
Q ss_pred CCCcccC-ccccCcCCcceeecccc-cccCCCc-cccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCe
Q 001889 592 SELENVP-ENMEKIESLEELDISGT-AIRQPPS-SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTK 668 (1000)
Q Consensus 592 ~~l~~lp-~~l~~l~~L~~L~L~~~-~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~ 668 (1000)
. +..+| ..+.++++|++|++++| .+..++. .+..+++|++|++++|.... + +.+..+++|+.
T Consensus 147 ~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------------~-~~~~~l~~L~~ 211 (440)
T 3zyj_A 147 P-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-------------I-PNLTPLIKLDE 211 (440)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-------------C-CCCTTCSSCCE
T ss_pred c-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-------------c-cccCCCcccCE
Confidence 2 22222 23444444555555442 2333322 34444445555554443211 0 22344445555
Q ss_pred ecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCcccc-ccccCCCCcCEEEEcCC
Q 001889 669 LDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLP-ATISLLFKLEELELEDC 722 (1000)
Q Consensus 669 L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c 722 (1000)
|+|++|.+.. ..|..+..+++|+.|+|++|.++.++ ..+..+++|+.|+|++|
T Consensus 212 L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 212 LDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp EECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred EECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 5555554432 22344444555555555555544332 23444555555555544
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=2e-17 Score=200.40 Aligned_cols=233 Identities=18% Similarity=0.235 Sum_probs=176.0
Q ss_pred ecccccccCCCccccccch-hhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEE
Q 001889 510 IENTTLVLSGCSKLMKFPE-ILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLC 587 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~-~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 587 (1000)
.+.+.++++++. +..+|. .+..+++|++|+|++|.+..+++ .++.+++|++|+|++|......|..++++++|++|+
T Consensus 51 ~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 344567777764 555554 56789999999999999998875 799999999999999885444455679999999999
Q ss_pred eeCCCCCcccCcc-ccCcCCcceeecccccccCCC-ccccCCCCCcEEEccCCCCCCCCCC--Ccc-------------c
Q 001889 588 LSGCSELENVPEN-MEKIESLEELDISGTAIRQPP-SSIFLMKNLKELSFRGCKGPPSSTS--CSW-------------R 650 (1000)
Q Consensus 588 Ls~c~~l~~lp~~-l~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~c~~~~~~~~--~~~-------------~ 650 (1000)
|++| .+..+|.. ++++++|++|+|++|.+..++ ..++.+++|++|++++|........ ..+ .
T Consensus 130 L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 130 LERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred eeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 9996 56677765 589999999999999999884 5789999999999999975332100 000 0
Q ss_pred cC------------cccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccc-cccccCCCCcCEE
Q 001889 651 FP------------FNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSL-PATISLLFKLEEL 717 (1000)
Q Consensus 651 ~p------------~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L 717 (1000)
.| +..++. ...++|+.|+|++|.+.. +..+..+++|+.|+|++|.+..+ |..+..+++|+.|
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp CCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred CCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 00 000000 112467778888887753 46788999999999999999965 7789999999999
Q ss_pred EEcCCcCCCccCCC---CCCccEEeeeCCCCCcccCC
Q 001889 718 ELEDCKRLQSLPQL---PPNIVSVSVNDCASLGKLSD 751 (1000)
Q Consensus 718 ~L~~c~~L~~lp~l---~~~L~~L~~~~C~~L~~l~~ 751 (1000)
+|++|. +..+|.. .++|+.|++++|. +..+|.
T Consensus 284 ~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~ 318 (597)
T 3oja_B 284 YISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVER 318 (597)
T ss_dssp ECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGG
T ss_pred ECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCc
Confidence 999975 5556643 4799999999985 445553
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=8.4e-17 Score=174.45 Aligned_cols=205 Identities=25% Similarity=0.346 Sum_probs=122.8
Q ss_pred ccccccceeecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcc-cC
Q 001889 501 WKEEVCHVLIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSR-IN 578 (1000)
Q Consensus 501 ~~~~i~~vl~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~-i~ 578 (1000)
|....|......++++++++ .++.+|..+. ++|+.|+|+++.+..+|. .+..+++|++|+|++|. +..+|.. +.
T Consensus 7 ~~~~~C~c~~~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~ 82 (270)
T 2o6q_A 7 KDGGVCSCNNNKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFK 82 (270)
T ss_dssp GGTCSBEEETTTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTS
T ss_pred CCCCCCEeCCCCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhc
Confidence 33334444344456666654 3555665442 567777777777776664 46677777777777765 4455543 35
Q ss_pred CCCCCcEEEeeCCCCCcccC-ccccCcCCcceeecccccccCCCc-cccCCCCCcEEEccCCCCCCCCCCCccccCcccc
Q 001889 579 GLKSLKTLCLSGCSELENVP-ENMEKIESLEELDISGTAIRQPPS-SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLM 656 (1000)
Q Consensus 579 ~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~ 656 (1000)
++++|++|++++|. +..+| ..+..+++|++|++++|.+..+|. .+..+++|++|++++|..... .
T Consensus 83 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------~ 149 (270)
T 2o6q_A 83 ELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL------------P 149 (270)
T ss_dssp SCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------C
T ss_pred CCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc------------C
Confidence 67777777777653 34444 345667777777777777766643 356667777777776653211 0
Q ss_pred cCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCcccccc-ccCCCCcCEEEEcCCc
Q 001889 657 LPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPAT-ISLLFKLEELELEDCK 723 (1000)
Q Consensus 657 ~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 723 (1000)
...+..+++|+.|+|++|.+.. ..+..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 1235566677777777766643 2223456667777777777766666653 5566666666666654
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=4.9e-17 Score=189.46 Aligned_cols=201 Identities=25% Similarity=0.312 Sum_probs=171.2
Q ss_pred eeecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccC-cccCCCCCCcE
Q 001889 508 VLIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLP-SRINGLKSLKT 585 (1000)
Q Consensus 508 vl~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~ 585 (1000)
-+.+.+.|+|++|......+..+..+++|++|+|++|.++.+|. .+..+++|++|+|++|. +..+| ..+.++++|++
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRR 164 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCE
Confidence 45567789999986444455788899999999999999999887 58999999999999987 55555 46889999999
Q ss_pred EEeeCCCCCcccCc-cccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCC
Q 001889 586 LCLSGCSELENVPE-NMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLC 664 (1000)
Q Consensus 586 L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~ 664 (1000)
|+|++|+.+..++. .+.++++|++|+|++|.+..+| .+..+++|+.|+|++|.... ..+..+.+++
T Consensus 165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~------------~~~~~~~~l~ 231 (440)
T 3zyj_A 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA------------IRPGSFQGLM 231 (440)
T ss_dssp EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCE------------ECTTTTTTCT
T ss_pred eCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCc------------cChhhhccCc
Confidence 99999999988876 5889999999999999999998 48889999999999997432 1235688999
Q ss_pred CCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCc
Q 001889 665 SLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELEDCK 723 (1000)
Q Consensus 665 ~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 723 (1000)
+|+.|+|++|.+.. ..+..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 232 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 232 HLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTCCCCE-ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCCEEECCCCceeE-EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 99999999999854 456788999999999999999998886 45889999999999876
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=4.9e-17 Score=190.29 Aligned_cols=83 Identities=25% Similarity=0.221 Sum_probs=42.4
Q ss_pred CCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccc-cccccCCCCcCEEEEcCCcCCCccCC---CCCCc
Q 001889 660 LSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSL-PATISLLFKLEELELEDCKRLQSLPQ---LPPNI 735 (1000)
Q Consensus 660 l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~---l~~~L 735 (1000)
+..+++|+.|+|++|.+.. ..|..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|..-...|. -.++|
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINK-IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcccc-cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 4455555555555555532 2344555555566666665555544 33455555666666655543222221 12455
Q ss_pred cEEeeeCC
Q 001889 736 VSVSVNDC 743 (1000)
Q Consensus 736 ~~L~~~~C 743 (1000)
+.|++++|
T Consensus 374 ~~L~L~~N 381 (455)
T 3v47_A 374 KELALDTN 381 (455)
T ss_dssp CEEECCSS
T ss_pred cEEECCCC
Confidence 56666554
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=1.7e-17 Score=201.74 Aligned_cols=221 Identities=19% Similarity=0.183 Sum_probs=128.4
Q ss_pred cccccccCCCccccccchhhcCCCCCCeeeccCCccc-ccCCccccCCCCCEEeccCCCCCcc--cCcccCCCCCCcEEE
Q 001889 511 ENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSIT-EVPSSIELLTGLQLLNLSDCKDLVR--LPSRINGLKSLKTLC 587 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~-~lp~si~~L~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~ 587 (1000)
..+.|++++|.. ..+|.. .+++|+.|+++++... .+ .+..+++|++|++++|..... +|..+..+++|++|+
T Consensus 308 ~L~~L~l~~n~l-~~lp~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp CCSEEEEESCCC-SSCCCC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred cCCEEEcccccC-cccccC--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence 345667777654 666644 5777777777766332 22 355667777777776652221 255566667777777
Q ss_pred eeCCCCCcccCccccCcCCcceeecccccccCCC--ccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCC
Q 001889 588 LSGCSELENVPENMEKIESLEELDISGTAIRQPP--SSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCS 665 (1000)
Q Consensus 588 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~ 665 (1000)
+++|. +..+|..+..+++|++|++++|.+...+ ..+..+++|++|++++|..... .+..+..+++
T Consensus 383 L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~ 449 (606)
T 3vq2_A 383 LSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID------------FDGIFLGLTS 449 (606)
T ss_dssp CCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC------------CTTTTTTCTT
T ss_pred CCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc------------chhhhcCCCC
Confidence 76643 5556666666777777777777666653 3566667777777766653211 1234555666
Q ss_pred CCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccc-cccccCCCCcCEEEEcCCcCCCccCCC---CCCccEEeee
Q 001889 666 LTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSL-PATISLLFKLEELELEDCKRLQSLPQL---PPNIVSVSVN 741 (1000)
Q Consensus 666 L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l---~~~L~~L~~~ 741 (1000)
|+.|++++|.+....+|..++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+.....|.. .++|+.|+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 666666666654333555666666666666666666644 345566666666666666433332321 2456666666
Q ss_pred CCCCCcccC
Q 001889 742 DCASLGKLS 750 (1000)
Q Consensus 742 ~C~~L~~l~ 750 (1000)
+|. ++.+|
T Consensus 530 ~N~-l~~~p 537 (606)
T 3vq2_A 530 FNR-IETSK 537 (606)
T ss_dssp TSC-CCCEE
T ss_pred CCc-CcccC
Confidence 654 44444
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=6.7e-17 Score=180.88 Aligned_cols=223 Identities=23% Similarity=0.240 Sum_probs=155.8
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeC
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSG 590 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 590 (1000)
.+.++++++ .+..+|..+ .++|+.|+|++|.+..+++ .+..+++|++|+|++|......|..+.++++|++|++++
T Consensus 35 l~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDL-GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSS-CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCC-CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 456788776 467788765 3799999999999998855 799999999999999875555588899999999999998
Q ss_pred CCCCcccCccccCcCCcceeecccccccCCCc-cccCCCCCcEEEccCCCCCC----CCCCCccc-----c---Cccccc
Q 001889 591 CSELENVPENMEKIESLEELDISGTAIRQPPS-SIFLMKNLKELSFRGCKGPP----SSTSCSWR-----F---PFNLML 657 (1000)
Q Consensus 591 c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~----~~~~~~~~-----~---p~~~~~ 657 (1000)
| .+..+|..+. ++|++|++++|.+..+|. .+..+++|+.|++++|.... +....... + .+..++
T Consensus 112 n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 N-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp S-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred C-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 6 5668887765 899999999999999965 48889999999999987531 11100000 0 011111
Q ss_pred CCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCcCCCccCCC---CC
Q 001889 658 PSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELEDCKRLQSLPQL---PP 733 (1000)
Q Consensus 658 ~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l---~~ 733 (1000)
..+ .++|++|++++|.+.. ..+..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|. +..+|.. .+
T Consensus 189 ~~~--~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~ 264 (332)
T 2ft3_A 189 KDL--PETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLK 264 (332)
T ss_dssp SSS--CSSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCT
T ss_pred ccc--cCCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCc
Confidence 111 1466666666666643 233556667777777777777766554 56667777777777663 4455532 25
Q ss_pred CccEEeeeCCC
Q 001889 734 NIVSVSVNDCA 744 (1000)
Q Consensus 734 ~L~~L~~~~C~ 744 (1000)
+|+.|+++++.
T Consensus 265 ~L~~L~l~~N~ 275 (332)
T 2ft3_A 265 LLQVVYLHTNN 275 (332)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECCCCC
Confidence 66667666653
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=4.9e-17 Score=190.28 Aligned_cols=90 Identities=28% Similarity=0.267 Sum_probs=74.4
Q ss_pred CCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccc-cccccCCCCcCEEEEcCCcCCCccCC----CC
Q 001889 658 PSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSL-PATISLLFKLEELELEDCKRLQSLPQ----LP 732 (1000)
Q Consensus 658 ~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----l~ 732 (1000)
..+.++++|+.|+|++|.+.. ..|..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|. ++.+|. -.
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 394 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRL 394 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred hHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccC
Confidence 468889999999999999843 4577889999999999999999977 6789999999999999975 556663 23
Q ss_pred CCccEEeeeCCCCCccc
Q 001889 733 PNIVSVSVNDCASLGKL 749 (1000)
Q Consensus 733 ~~L~~L~~~~C~~L~~l 749 (1000)
++|+.|++++++--...
T Consensus 395 ~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTCCEEECCSSCBCCCT
T ss_pred CcccEEEccCCCcccCC
Confidence 78999999988644333
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=5.7e-17 Score=189.60 Aligned_cols=216 Identities=26% Similarity=0.344 Sum_probs=178.2
Q ss_pred cccccccCCCccccccchhhcCCCCCCeeeccCCcccccC-CccccCCCCCEEeccCCCCCcccCc-ccCCCCCCcEEEe
Q 001889 511 ENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVP-SSIELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKTLCL 588 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp-~si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L 588 (1000)
+.+.|+|+++......|..+.++++|++|+|++|.+..++ ..+..+++|++|+|++|. +..+|. .+..+++|++|+|
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEEC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEEC
Confidence 4568999998655555778899999999999999999876 568999999999999987 556654 4888999999999
Q ss_pred eCCCCCcccC-ccccCcCCcceeeccc-ccccCCCc-cccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCC
Q 001889 589 SGCSELENVP-ENMEKIESLEELDISG-TAIRQPPS-SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCS 665 (1000)
Q Consensus 589 s~c~~l~~lp-~~l~~l~~L~~L~L~~-~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~ 665 (1000)
++|. +..+| ..+.++++|++|++++ +.+..++. .+..+++|++|++++|.... + +.+..+++
T Consensus 155 ~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------------~-~~~~~l~~ 219 (452)
T 3zyi_A 155 RNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-------------M-PNLTPLVG 219 (452)
T ss_dssp CSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-------------C-CCCTTCTT
T ss_pred CCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-------------c-cccccccc
Confidence 9965 55565 4689999999999998 46666654 58889999999999997432 1 45788999
Q ss_pred CCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccc-cccccCCCCcCEEEEcCCcCCCccCC----CCCCccEEee
Q 001889 666 LTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSL-PATISLLFKLEELELEDCKRLQSLPQ----LPPNIVSVSV 740 (1000)
Q Consensus 666 L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----l~~~L~~L~~ 740 (1000)
|+.|+|++|.+.. ..|..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++| .+..+|. ..++|+.|++
T Consensus 220 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 220 LEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp CCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEEC
T ss_pred ccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEc
Confidence 9999999999854 4578899999999999999999976 557899999999999998 4566663 2368888988
Q ss_pred eCCC
Q 001889 741 NDCA 744 (1000)
Q Consensus 741 ~~C~ 744 (1000)
++++
T Consensus 298 ~~Np 301 (452)
T 3zyi_A 298 HHNP 301 (452)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8764
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=8.9e-17 Score=180.97 Aligned_cols=211 Identities=19% Similarity=0.323 Sum_probs=160.8
Q ss_pred eeecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEE
Q 001889 508 VLIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLC 587 (1000)
Q Consensus 508 vl~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 587 (1000)
.+.+.++|++++| .+..+|. +..+++|++|++++|.+..++. +..+++|++|++++|..+..++. +..+++|++|+
T Consensus 86 ~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~ 161 (347)
T 4fmz_A 86 NLVKLTNLYIGTN-KITDISA-LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLT 161 (347)
T ss_dssp TCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEE
T ss_pred cCCcCCEEEccCC-cccCchH-HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEE
Confidence 3456678999988 4666664 6779999999999999998887 88999999999999987776665 78999999999
Q ss_pred eeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCC
Q 001889 588 LSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLT 667 (1000)
Q Consensus 588 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~ 667 (1000)
+++|. +..++. +..+++|++|++++|.+..++. +..+++|+.|++++|..... ..+..+++|+
T Consensus 162 l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~~L~ 224 (347)
T 4fmz_A 162 VTESK-VKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDI--------------TPVANMTRLN 224 (347)
T ss_dssp CCSSC-CCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC--------------GGGGGCTTCC
T ss_pred ecCCC-cCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCC--------------chhhcCCcCC
Confidence 99865 444544 7889999999999999988865 78889999999988864321 1155667777
Q ss_pred eecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCC--CCCccEEeeeCCC
Q 001889 668 KLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQL--PPNIVSVSVNDCA 744 (1000)
Q Consensus 668 ~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--~~~L~~L~~~~C~ 744 (1000)
.|++++|.+.. ++. +..+++|+.|++++|.++.++ .+..+++|+.|++++| .+..+|.+ .++|+.|++++|.
T Consensus 225 ~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 225 SLKIGNNKITD--LSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp EEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred EEEccCCccCC--Ccc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc
Confidence 77777777754 443 677777777777777777764 5677777777777776 34444432 3677777777774
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=4.4e-17 Score=180.11 Aligned_cols=220 Identities=25% Similarity=0.319 Sum_probs=182.1
Q ss_pred ecccccccCCCccccccch-hhcCCCCCCeeeccCCccccc---CCccccCCCCCEEeccCCCCCcccCcccCCCCCCcE
Q 001889 510 IENTTLVLSGCSKLMKFPE-ILRSMEDLSELFLDGTSITEV---PSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKT 585 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~-~~~~l~~L~~L~L~~~~i~~l---p~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 585 (1000)
.+.+.|+++++. +..+|. .+.++++|++|+|++|.+..+ |..+..+++|++|+|++|. +..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCE
Confidence 356689999985 556665 468899999999999998865 5677889999999999986 6778888999999999
Q ss_pred EEeeCCCCCcccC--ccccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCC
Q 001889 586 LCLSGCSELENVP--ENMEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSG 662 (1000)
Q Consensus 586 L~Ls~c~~l~~lp--~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~ 662 (1000)
|++++|. +..++ ..+..+++|++|++++|.+... |..+..+++|++|++++|.... ...+..+..
T Consensus 106 L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~ 173 (306)
T 2z66_A 106 LDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-----------NFLPDIFTE 173 (306)
T ss_dssp EECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG-----------GEECSCCTT
T ss_pred EECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc-----------ccchhHHhh
Confidence 9999964 55555 4789999999999999999876 5668889999999999986321 023467889
Q ss_pred CCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCcCCCccC----CCCCCccE
Q 001889 663 LCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELEDCKRLQSLP----QLPPNIVS 737 (1000)
Q Consensus 663 l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp----~l~~~L~~ 737 (1000)
+++|+.|++++|.+.. ..|..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|......| .+|++|+.
T Consensus 174 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred CcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 9999999999999854 447889999999999999999998876 67899999999999997554443 45578999
Q ss_pred EeeeCCC
Q 001889 738 VSVNDCA 744 (1000)
Q Consensus 738 L~~~~C~ 744 (1000)
|++++++
T Consensus 253 L~L~~N~ 259 (306)
T 2z66_A 253 LNLTQND 259 (306)
T ss_dssp EECTTCC
T ss_pred EEccCCC
Confidence 9998875
No 46
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=4.5e-17 Score=180.14 Aligned_cols=187 Identities=25% Similarity=0.321 Sum_probs=101.8
Q ss_pred cccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeC
Q 001889 511 ENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSG 590 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 590 (1000)
+.+.|++++| .+..+|. +..+++|++|+|++|.+..++. +..+++|++|+|++|. +..+| .+..+++|++|++++
T Consensus 42 ~L~~L~l~~~-~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 42 GITTLSAFGT-GVTTIEG-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp TCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTT
T ss_pred CcCEEEeeCC-CccCchh-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCC
Confidence 3445555555 2344442 4446666666666666665555 5566666666666654 44443 355566666666665
Q ss_pred CCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeec
Q 001889 591 CSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLD 670 (1000)
Q Consensus 591 c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~ 670 (1000)
|. +..++. +..+++|++|++++|.+..++. +..+++|++|++++|.... + +.+..+++|+.|+
T Consensus 117 n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-------------~-~~l~~l~~L~~L~ 179 (308)
T 1h6u_A 117 TQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-------------L-TPLANLSKLTTLK 179 (308)
T ss_dssp SC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-------------C-GGGTTCTTCCEEE
T ss_pred CC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-------------C-hhhcCCCCCCEEE
Confidence 43 334443 5556666666666666655543 5555666666666554221 1 1145555666666
Q ss_pred CCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCc
Q 001889 671 LSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCK 723 (1000)
Q Consensus 671 Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 723 (1000)
+++|.+.. ++. +..+++|+.|+|++|.++.++. +..+++|+.|+|++|+
T Consensus 180 l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 180 ADDNKISD--ISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred CCCCccCc--Chh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 66665543 332 5555666666666666665552 5556666666665543
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.8e-16 Score=173.54 Aligned_cols=197 Identities=21% Similarity=0.227 Sum_probs=141.6
Q ss_pred hcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcce
Q 001889 530 LRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEE 609 (1000)
Q Consensus 530 ~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 609 (1000)
++++++|+.++++++.++.+|..+. ++|+.|+|++|......|..+..+++|++|+|++| .+..++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCE
Confidence 4557778888888888888887664 67888888887744444566778888888888875 45556554 67888888
Q ss_pred eecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCC
Q 001889 610 LDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLS 689 (1000)
Q Consensus 610 L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~ 689 (1000)
|++++|.+..+|..+..+++|++|++++|..... .+..+.++++|+.|+|++|.+.. ..+..+..++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l------------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~ 148 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL------------PLGALRGLGELQELYLKGNELKT-LPPGLLTPTP 148 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC------------CSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCT
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCccc------------CHHHHcCCCCCCEEECCCCCCCc-cChhhccccc
Confidence 8888888888888788888888888888764321 11346778888888888888754 2334467788
Q ss_pred cCcEEeCCCCCCcccccc-ccCCCCcCEEEEcCCcCCCccCCCC---CCccEEeeeCCC
Q 001889 690 SLEELYLSKNSFVSLPAT-ISLLFKLEELELEDCKRLQSLPQLP---PNIVSVSVNDCA 744 (1000)
Q Consensus 690 ~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~l~---~~L~~L~~~~C~ 744 (1000)
+|+.|+|++|.++.+|.. +..+++|+.|+|++|. ++.+|... ++|+.|++.+++
T Consensus 149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 888888888888888764 4678888888888764 55666322 456667666654
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.72 E-value=8e-17 Score=191.94 Aligned_cols=88 Identities=16% Similarity=0.273 Sum_probs=67.4
Q ss_pred CCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCcc---ccccccCCCCcCEEEEcCCcCCCccCC----CCC
Q 001889 661 SGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVS---LPATISLLFKLEELELEDCKRLQSLPQ----LPP 733 (1000)
Q Consensus 661 ~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~---lp~~i~~l~~L~~L~L~~c~~L~~lp~----l~~ 733 (1000)
..+++|++|++++|.+. +.+|..++.+++|+.|+|++|.++. +|..+..+++|+.|+|++|.....+|. ..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 57788999999999884 3577888889999999999998884 456788889999999998875554663 236
Q ss_pred CccEEeeeCCCCCccc
Q 001889 734 NIVSVSVNDCASLGKL 749 (1000)
Q Consensus 734 ~L~~L~~~~C~~L~~l 749 (1000)
+|+.|++++|.--..+
T Consensus 400 ~L~~L~Ls~N~l~~~~ 415 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTI 415 (520)
T ss_dssp TCCEEECCSSCCCGGG
T ss_pred cCCEEECcCCCCCcch
Confidence 8888888887643333
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=8.2e-17 Score=175.12 Aligned_cols=208 Identities=25% Similarity=0.242 Sum_probs=159.1
Q ss_pred cccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCcc
Q 001889 522 KLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPEN 600 (1000)
Q Consensus 522 ~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 600 (1000)
.+..+|..+. ++|++|+|++|.++.++. .+..+++|++|+|++|......+..+.++++|++|++++|......+..
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 3556776543 579999999999998876 6888999999999998643333446888999999999987544444577
Q ss_pred ccCcCCcceeecccccccCCCc-cccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCC
Q 001889 601 MEKIESLEELDISGTAIRQPPS-SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEG 679 (1000)
Q Consensus 601 l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~ 679 (1000)
+.++++|++|++++|.+..++. .+..+++|++|++++|..... .++..+..+++|+.|++++|.+..
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~l~~~~~~l~~L~~L~Ls~N~l~~- 163 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------KLPEYFSNLTNLEHLDLSSNKIQS- 163 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------CCCGGGGGCTTCCEEECCSSCCCE-
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-----------cCchhhccCCCCCEEECCCCCCCc-
Confidence 8899999999999999888854 688899999999998874321 123567788899999999998854
Q ss_pred CcccccCCCCcCc----EEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCC----CCCCccEEeeeCCC
Q 001889 680 AIPRDIGNLSSLE----ELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQ----LPPNIVSVSVNDCA 744 (1000)
Q Consensus 680 ~ip~~l~~l~~L~----~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~----l~~~L~~L~~~~C~ 744 (1000)
..+..+..+++|+ .|++++|.++.+|.......+|+.|+|++|. ++.+|. -.++|+.|++++++
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 2334566666666 8999999999888877777789999999876 666653 23678888888654
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=1.5e-17 Score=184.43 Aligned_cols=197 Identities=22% Similarity=0.278 Sum_probs=96.8
Q ss_pred CCCCCCeeeccCCccc-ccCCcc--ccCCCCCEEeccCCCCCcccCcccCCC-----CCCcEEEeeCCCCCcccCccccC
Q 001889 532 SMEDLSELFLDGTSIT-EVPSSI--ELLTGLQLLNLSDCKDLVRLPSRINGL-----KSLKTLCLSGCSELENVPENMEK 603 (1000)
Q Consensus 532 ~l~~L~~L~L~~~~i~-~lp~si--~~L~~L~~L~L~~c~~l~~lp~~i~~l-----~~L~~L~Ls~c~~l~~lp~~l~~ 603 (1000)
++++|++|+|++|.+. .+|..+ ..+++|++|+|++|. +..+|..+..+ ++|++|+|++|......|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4555666666665555 445544 555666666666554 33334444444 55666666654433333355555
Q ss_pred cCCcceeecccccccC---CCccc--cCCCCCcEEEccCCCCCCCCCCCccccCccccc-CCCCCCCCCCeecCCCCCCC
Q 001889 604 IESLEELDISGTAIRQ---PPSSI--FLMKNLKELSFRGCKGPPSSTSCSWRFPFNLML-PSLSGLCSLTKLDLSDCNIQ 677 (1000)
Q Consensus 604 l~~L~~L~L~~~~i~~---lp~~i--~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~-~~l~~l~~L~~L~Ls~~~l~ 677 (1000)
+++|++|++++|.+.+ +|..+ ..+++|++|++++|..... ...+ ..+..+++|+.|+|++|.+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP----------SGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH----------HHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch----------HHHHHHHHhcCCCCCEEECCCCcCC
Confidence 6666666666555432 12233 4555666666655542210 0000 11234455666666665553
Q ss_pred CCCcc-cccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCC--CCCccEEeeeCC
Q 001889 678 EGAIP-RDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQL--PPNIVSVSVNDC 743 (1000)
Q Consensus 678 ~~~ip-~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--~~~L~~L~~~~C 743 (1000)
.. .| ..+..+++|+.|+|++|.++.+|..+. ++|+.|+|++|+ ++.+|.+ .++|+.|+++++
T Consensus 242 ~~-~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 242 DA-AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp SS-CCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTC
T ss_pred cc-cchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCC
Confidence 31 11 234445556666666666555555444 556666665542 3434431 144555555443
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=9.4e-17 Score=187.49 Aligned_cols=208 Identities=22% Similarity=0.190 Sum_probs=133.2
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEee
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLS 589 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 589 (1000)
.+.+.|++++|. +..+| ++++++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++.+++|++|+++
T Consensus 85 ~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 85 TNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCH 156 (457)
T ss_dssp TTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECT
T ss_pred CCCCEEECcCCC-Cceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECC
Confidence 344566676654 44444 556777777777777777665 6677777777777765 44443 5677777777777
Q ss_pred CCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCee
Q 001889 590 GCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKL 669 (1000)
Q Consensus 590 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L 669 (1000)
+|..++.+ .++.+++|++|++++|.++.+| +..+++|+.|++++|.... + .+..+++|+.|
T Consensus 157 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~-------------~--~l~~l~~L~~L 217 (457)
T 3bz5_A 157 LNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK-------------L--DLNQNIQLTFL 217 (457)
T ss_dssp TCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSC-------------C--CCTTCTTCSEE
T ss_pred CCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCe-------------e--ccccCCCCCEE
Confidence 77666655 3667777788888777777776 6677778888777776322 1 25667778888
Q ss_pred cCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCc----------CEEEEcCCcCCCccCC-CCCCccEE
Q 001889 670 DLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKL----------EELELEDCKRLQSLPQ-LPPNIVSV 738 (1000)
Q Consensus 670 ~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L----------~~L~L~~c~~L~~lp~-l~~~L~~L 738 (1000)
++++|++.. +| ++.+++|+.|++++|.++.+| +..+++| +.|++++|..+..+|. ..++|+.|
T Consensus 218 ~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L 291 (457)
T 3bz5_A 218 DCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKEL 291 (457)
T ss_dssp ECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCC
T ss_pred ECcCCcccc--cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEE
Confidence 888887754 55 677778888888887777665 2333333 3444444444444441 22566666
Q ss_pred eeeCCCCCcccC
Q 001889 739 SVNDCASLGKLS 750 (1000)
Q Consensus 739 ~~~~C~~L~~l~ 750 (1000)
++++|..++.++
T Consensus 292 ~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 292 DVTHNTQLYLLD 303 (457)
T ss_dssp CCTTCTTCCEEE
T ss_pred ECCCCcccceec
Confidence 666666555544
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=1.4e-16 Score=193.63 Aligned_cols=221 Identities=21% Similarity=0.193 Sum_probs=146.7
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCC
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 591 (1000)
.+.|+++++......+..++.+++|++|++++|.++.+|..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 44677777754444445577788888888888888888888888888888888887755555667778888888888887
Q ss_pred CCCcccCcc-ccCcCCcceeecccccccCC---CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCC
Q 001889 592 SELENVPEN-MEKIESLEELDISGTAIRQP---PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLT 667 (1000)
Q Consensus 592 ~~l~~lp~~-l~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~ 667 (1000)
.....+|.. +..+++|++|++++|.+... |..+..+++|++|++++|.... ..+..+..+++|+
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS------------LKTEAFKECPQLE 403 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE------------ECTTTTTTCTTCS
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc------------CCHHHhcCCccCC
Confidence 666566544 77888888888888877765 5567788888888888776321 1123455666666
Q ss_pred eecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccc-cccccCCCCcCEEEEcCCcCCCc-cC-----CCCCCccEEee
Q 001889 668 KLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSL-PATISLLFKLEELELEDCKRLQS-LP-----QLPPNIVSVSV 740 (1000)
Q Consensus 668 ~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~-lp-----~l~~~L~~L~~ 740 (1000)
.|++++|.+.....+..+..+++|+.|+|++|.+... |..+..+++|+.|+|++|+.-.. +| ...++|+.|++
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 6666666654322233466666666666666666643 44556666666666666653221 11 11256666666
Q ss_pred eCCC
Q 001889 741 NDCA 744 (1000)
Q Consensus 741 ~~C~ 744 (1000)
++|.
T Consensus 484 s~n~ 487 (606)
T 3t6q_A 484 SFCD 487 (606)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 6663
No 53
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=6.9e-17 Score=178.66 Aligned_cols=188 Identities=23% Similarity=0.394 Sum_probs=161.0
Q ss_pred CCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceee
Q 001889 532 SMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELD 611 (1000)
Q Consensus 532 ~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 611 (1000)
.+++|+.|+++++.+..+| .+..+++|++|+|++|. +..++. +..+++|++|++++|. +..++ .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 4789999999999999987 58999999999999986 667776 8899999999999975 66665 689999999999
Q ss_pred cccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcC
Q 001889 612 ISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSL 691 (1000)
Q Consensus 612 L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L 691 (1000)
+++|.+..++. +..+++|++|++++|..... +.+..+++|+.|++++|.+.. ++. +..+++|
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~--------------~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L 175 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNI--------------SPLAGLTNLQYLSIGNAQVSD--LTP-LANLSKL 175 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCC--------------GGGGGCTTCCEEECCSSCCCC--CGG-GTTCTTC
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCccCcC--------------ccccCCCCccEEEccCCcCCC--Chh-hcCCCCC
Confidence 99999999865 89999999999999974321 227788999999999999865 555 8999999
Q ss_pred cEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCC--CCCccEEeeeCCC
Q 001889 692 EELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQL--PPNIVSVSVNDCA 744 (1000)
Q Consensus 692 ~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--~~~L~~L~~~~C~ 744 (1000)
+.|+|++|.++.+|. +..+++|+.|+|++|. +..++.+ .++|+.|++++|+
T Consensus 176 ~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 176 TTLKADDNKISDISP-LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECCSSCCCCCGG-GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEE
T ss_pred CEEECCCCccCcChh-hcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCe
Confidence 999999999999886 8899999999999985 4555532 3788899988875
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=188.40 Aligned_cols=239 Identities=20% Similarity=0.218 Sum_probs=132.8
Q ss_pred eecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCc-cccCCCCCEEeccCCCCCcccCcccCCCCCCcEEE
Q 001889 509 LIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSS-IELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLC 587 (1000)
Q Consensus 509 l~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 587 (1000)
+.+.++|+|++|......|..+.++++|++|+|++|.+..+|.. +..+++|++|+|++|......|..+.++++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 34445666666643333455666666777777776666666653 46666777777766664444455666666777777
Q ss_pred eeCCCCCcccCccccCcCCcceeecccccccCCCc-cccCCCCCcEEEccCCCCCCCCC--CCc---c---cc----Ccc
Q 001889 588 LSGCSELENVPENMEKIESLEELDISGTAIRQPPS-SIFLMKNLKELSFRGCKGPPSST--SCS---W---RF----PFN 654 (1000)
Q Consensus 588 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~--~~~---~---~~----p~~ 654 (1000)
+++|......|..+..+++|++|++++|.+..+|. .+..+++|+.|++++|....... +.. + .+ ...
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 76654433344556666677777777766666643 35566666666666665321100 000 0 00 001
Q ss_pred cccCCCCCCCCCCeecCCCCCCCCCCcc-cccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCcCCCccCC--
Q 001889 655 LMLPSLSGLCSLTKLDLSDCNIQEGAIP-RDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELEDCKRLQSLPQ-- 730 (1000)
Q Consensus 655 ~~~~~l~~l~~L~~L~Ls~~~l~~~~ip-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~-- 730 (1000)
.+++......+|+.|+|++|++.. +| ..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|..-...|.
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCS--CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ccCcccccCccccEEECcCCcccc--cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 111222223356666666665543 44 345666777777777777765554 456677777777776643322232
Q ss_pred -CCCCccEEeeeCCCCCcccC
Q 001889 731 -LPPNIVSVSVNDCASLGKLS 750 (1000)
Q Consensus 731 -l~~~L~~L~~~~C~~L~~l~ 750 (1000)
-.++|+.|++++| .++.++
T Consensus 293 ~~l~~L~~L~L~~N-~l~~~~ 312 (477)
T 2id5_A 293 RGLNYLRVLNVSGN-QLTTLE 312 (477)
T ss_dssp TTCTTCCEEECCSS-CCSCCC
T ss_pred cCcccCCEEECCCC-cCceeC
Confidence 1256777777766 344443
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=4.3e-16 Score=187.49 Aligned_cols=209 Identities=28% Similarity=0.342 Sum_probs=107.3
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCC
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 591 (1000)
.+.|++++| .+..+|. .+++|++|+|++|.++.+|. .+++|++|+|++|. +..+|. .+++|++|++++|
T Consensus 63 L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 63 ITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp CSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSS
T ss_pred CcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCC
Confidence 345555554 2444444 24555555555555555554 44555555555543 444444 3455555555553
Q ss_pred CCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCC-C---cccc---CcccccCCCCCCC
Q 001889 592 SELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTS-C---SWRF---PFNLMLPSLSGLC 664 (1000)
Q Consensus 592 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~-~---~~~~---p~~~~~~~l~~l~ 664 (1000)
.+..+|.. +++|++|++++|.+..+|.. +.+|+.|++++|....-... . .+.+ .+..++ ..++
T Consensus 132 -~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~---~~~~ 201 (622)
T 3g06_A 132 -QLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP---TLPS 201 (622)
T ss_dssp -CCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---CCCT
T ss_pred -CCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCC---Cccc
Confidence 34445443 24555666665555555432 23344444444332110000 0 0000 000000 1123
Q ss_pred CCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCCCCCccEEeeeCCC
Q 001889 665 SLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQLPPNIVSVSVNDCA 744 (1000)
Q Consensus 665 ~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~~~L~~L~~~~C~ 744 (1000)
+|+.|++++|.+.. +|. .+++|+.|+|++|.++.+| ..+++|+.|+|++| .++.+|..+++|+.|++++|
T Consensus 202 ~L~~L~L~~N~l~~--l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N- 271 (622)
T 3g06_A 202 ELYKLWAYNNRLTS--LPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN- 271 (622)
T ss_dssp TCCEEECCSSCCSS--CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-
T ss_pred hhhEEECcCCcccc--cCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCC-
Confidence 44555555554432 332 2367777888888777777 45677888888876 56677777788888888877
Q ss_pred CCcccCC
Q 001889 745 SLGKLSD 751 (1000)
Q Consensus 745 ~L~~l~~ 751 (1000)
.+..+|.
T Consensus 272 ~L~~lp~ 278 (622)
T 3g06_A 272 QLTRLPE 278 (622)
T ss_dssp CCCSCCG
T ss_pred CCCcCCH
Confidence 4556653
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1.2e-16 Score=173.93 Aligned_cols=199 Identities=22% Similarity=0.187 Sum_probs=160.9
Q ss_pred cccccccCCCccccccc-hhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEe
Q 001889 511 ENTTLVLSGCSKLMKFP-EILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCL 588 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p-~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 588 (1000)
..+.|+++++. +..++ ..+.++++|++|+|++|.+..++. .+..+++|++|+|++|......|..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45689999985 44444 478889999999999999998876 6899999999999998754455577899999999999
Q ss_pred eCCCCCcccCccccCcCCcceeecccccccC--CCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCC
Q 001889 589 SGCSELENVPENMEKIESLEELDISGTAIRQ--PPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSL 666 (1000)
Q Consensus 589 s~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L 666 (1000)
++|......+..++.+++|++|++++|.+.. +|..+..+++|++|++++|..... .+..+..+.+|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~l~~L 175 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI------------YCTDLRVLHQM 175 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE------------CGGGGHHHHTC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC------------CHHHhhhhhhc
Confidence 9975444344468999999999999999987 588999999999999999974321 01233334444
Q ss_pred C----eecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCcccccc-ccCCCCcCEEEEcCCcC
Q 001889 667 T----KLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPAT-ISLLFKLEELELEDCKR 724 (1000)
Q Consensus 667 ~----~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 724 (1000)
+ .|++++|.+.. ++.......+|+.|+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus 176 ~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNF--IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TTCCEEEECCSSCCCE--ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred cccceeeecCCCcccc--cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 4 89999999865 666666667999999999999999875 58899999999999863
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=3.3e-16 Score=171.49 Aligned_cols=195 Identities=24% Similarity=0.264 Sum_probs=165.2
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCcccccC-CccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEe
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVP-SSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCL 588 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 588 (1000)
...+.++++++ .+..+|..+. ++|+.|+|++|.+..++ ..+..+++|++|+|++|. +..+|.. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEEC
T ss_pred CCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEEC
Confidence 34567888775 5777887653 78999999999999774 568999999999999986 6667664 78999999999
Q ss_pred eCCCCCcccCccccCcCCcceeecccccccCCC-ccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCC
Q 001889 589 SGCSELENVPENMEKIESLEELDISGTAIRQPP-SSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLT 667 (1000)
Q Consensus 589 s~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~ 667 (1000)
++| .+..+|..+..+++|++|++++|.++.+| ..+..+++|++|++++|..... .+..+..+++|+
T Consensus 85 s~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~ 151 (290)
T 1p9a_G 85 SHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL------------PPGLLTPTPKLE 151 (290)
T ss_dssp CSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC------------CTTTTTTCTTCC
T ss_pred CCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc------------ChhhcccccCCC
Confidence 995 67789999999999999999999999996 5688999999999999974321 113467899999
Q ss_pred eecCCCCCCCCCCccc-ccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcC
Q 001889 668 KLDLSDCNIQEGAIPR-DIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKR 724 (1000)
Q Consensus 668 ~L~Ls~~~l~~~~ip~-~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 724 (1000)
.|+|++|++.. +|. .+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+.
T Consensus 152 ~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 152 KLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred EEECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 99999999964 665 46789999999999999999999999999999999999863
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.70 E-value=4.7e-16 Score=181.51 Aligned_cols=182 Identities=20% Similarity=0.202 Sum_probs=126.8
Q ss_pred eecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEe
Q 001889 509 LIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCL 588 (1000)
Q Consensus 509 l~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 588 (1000)
+...+.|+++++ .+..+| .++.+++|++|+|++|.++.+| ++.+++|++|++++|. +..+| ++++++|++|++
T Consensus 41 l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEEC
Confidence 445668899987 466667 4677999999999999999886 8899999999999987 55565 788999999999
Q ss_pred eCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCe
Q 001889 589 SGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTK 668 (1000)
Q Consensus 589 s~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~ 668 (1000)
++| .+..+| ++.+++|++|++++|.++.++ ++.+++|++|++++|...... .+..+++|+.
T Consensus 114 ~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--------------~~~~l~~L~~ 174 (457)
T 3bz5_A 114 DTN-KLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--------------DVTPQTQLTT 174 (457)
T ss_dssp CSS-CCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--------------CCTTCTTCCE
T ss_pred CCC-cCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--------------ccccCCcCCE
Confidence 986 455665 789999999999999998875 778899999999888533221 1334445555
Q ss_pred ecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCC
Q 001889 669 LDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDC 722 (1000)
Q Consensus 669 L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 722 (1000)
|++++|++.. +| ++.+++|+.|++++|.++.++ +..+++|+.|+|++|
T Consensus 175 L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 175 LDCSFNKITE--LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN 222 (457)
T ss_dssp EECCSSCCCC--CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSS
T ss_pred EECCCCccce--ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCC
Confidence 5555554433 33 444444444444444444442 444444444444443
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=6.5e-17 Score=179.70 Aligned_cols=212 Identities=16% Similarity=0.111 Sum_probs=167.5
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEee
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLS 589 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 589 (1000)
.+.+.|+|++|......|..+..+++|++|+|++|.+..+++ +..+++|++|+|++|. +..+| .+++|++|+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAA 107 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEECC
Confidence 356689999986544556788899999999999999987776 8999999999999986 55555 34899999999
Q ss_pred CCCCCcccCccccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCC-CCCCCCC
Q 001889 590 GCSELENVPENMEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSL-SGLCSLT 667 (1000)
Q Consensus 590 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l-~~l~~L~ 667 (1000)
+|. +..++. ..+++|++|++++|.+..+ |..+..+++|++|++++|..... .+..+ ..+++|+
T Consensus 108 ~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~~l~~L~ 172 (317)
T 3o53_A 108 NNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV------------NFAELAASSDTLE 172 (317)
T ss_dssp SSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE------------EGGGGGGGTTTCC
T ss_pred CCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc------------cHHHHhhccCcCC
Confidence 864 455543 3478899999999999988 45788899999999999874321 11223 4678999
Q ss_pred eecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCC---CCCccEEeeeCCC
Q 001889 668 KLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQL---PPNIVSVSVNDCA 744 (1000)
Q Consensus 668 ~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---~~~L~~L~~~~C~ 744 (1000)
.|+|++|.+.. +|. ...+++|+.|+|++|.++.+|..+..+++|+.|+|++| .++.+|.. .++|+.|++++++
T Consensus 173 ~L~L~~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 173 HLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp EEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred EEECCCCcCcc--ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 99999999865 443 34589999999999999999988999999999999998 45677743 3688888888876
Q ss_pred CC
Q 001889 745 SL 746 (1000)
Q Consensus 745 ~L 746 (1000)
-.
T Consensus 249 ~~ 250 (317)
T 3o53_A 249 FH 250 (317)
T ss_dssp CB
T ss_pred cc
Confidence 43
No 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=187.75 Aligned_cols=230 Identities=18% Similarity=0.210 Sum_probs=143.3
Q ss_pred cccccccCCCccccccchhhcCCCCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCcccCc-ccCCCCCCcEEEe
Q 001889 511 ENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKTLCL 588 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L 588 (1000)
..+.|+|+++..-...|..+.++++|++|+|++|.+..+ |..+..+++|++|+|++|. +..+|. .+.++++|++|+|
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEEC
Confidence 445788888754444456777888888888888888866 5678888888888888876 555654 4677888888888
Q ss_pred eCCCCCcccCccccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCC-----Cc---ccc---Ccccc
Q 001889 589 SGCSELENVPENMEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTS-----CS---WRF---PFNLM 656 (1000)
Q Consensus 589 s~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~-----~~---~~~---p~~~~ 656 (1000)
++|......|..+..+++|++|++++|.+..+ |..+..+++|+.|++++|........ .. +.+ .+..+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 88765555567788888888888888888766 55777888888888888764321100 00 000 00011
Q ss_pred -cCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCcCCCccCC----
Q 001889 657 -LPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELEDCKRLQSLPQ---- 730 (1000)
Q Consensus 657 -~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~---- 730 (1000)
...+..+++|+.|++++|+... .+|..+....+|+.|+|++|.++.+|. .+..+++|+.|+|++|. +..++.
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 269 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLH 269 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCT
T ss_pred ChhhcccCcccceeeCCCCcccc-ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhcc
Confidence 1234455555555555554422 234444444466666666666666653 45666666666666654 333331
Q ss_pred CCCCccEEeeeCC
Q 001889 731 LPPNIVSVSVNDC 743 (1000)
Q Consensus 731 l~~~L~~L~~~~C 743 (1000)
-.++|+.|++.+|
T Consensus 270 ~l~~L~~L~L~~n 282 (477)
T 2id5_A 270 ELLRLQEIQLVGG 282 (477)
T ss_dssp TCTTCCEEECCSS
T ss_pred ccccCCEEECCCC
Confidence 1245666666655
No 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=3.6e-16 Score=189.93 Aligned_cols=223 Identities=18% Similarity=0.175 Sum_probs=146.8
Q ss_pred eecccccccCCCccccccchhhcCCCCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCcccCcc-cCCCCCCcEE
Q 001889 509 LIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRLPSR-INGLKSLKTL 586 (1000)
Q Consensus 509 l~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L 586 (1000)
+.+.+.|++++| .+..+|..+..+++|++|++++|.+..+ |..+..+++|++|++++|.....+|.. +..+++|++|
T Consensus 277 l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp CTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred ccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 455668888887 4667888888888999999998888866 456888888899998888766566554 7788888888
Q ss_pred EeeCCCCCccc--CccccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCC
Q 001889 587 CLSGCSELENV--PENMEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGL 663 (1000)
Q Consensus 587 ~Ls~c~~l~~l--p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l 663 (1000)
++++|...... |..+..+++|++|++++|.+... |..+..+++|++|++++|...... ....+..+
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~~l 424 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-----------AQSPFQNL 424 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT-----------TCCTTTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc-----------cchhhhCc
Confidence 88886544333 66778888888888888887766 567778888888888887632210 01224555
Q ss_pred CCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCcc--cc--ccccCCCCcCEEEEcCCcCCCccCC---CCCCcc
Q 001889 664 CSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVS--LP--ATISLLFKLEELELEDCKRLQSLPQ---LPPNIV 736 (1000)
Q Consensus 664 ~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~--lp--~~i~~l~~L~~L~L~~c~~L~~lp~---l~~~L~ 736 (1000)
++|+.|++++|.+. +..|..+..+++|++|+|++|.+.. +| ..+..+++|+.|+|++|......|. -.++|+
T Consensus 425 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 425 HLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp TTCCEEECTTCCCB-TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCEEECCCCccC-CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence 66666666666553 2344555566666666666665553 12 3455566666666666543222222 124555
Q ss_pred EEeeeCCC
Q 001889 737 SVSVNDCA 744 (1000)
Q Consensus 737 ~L~~~~C~ 744 (1000)
.|++++|.
T Consensus 504 ~L~Ls~N~ 511 (606)
T 3t6q_A 504 HVDLSHNR 511 (606)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 66665553
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=2.7e-17 Score=182.42 Aligned_cols=226 Identities=17% Similarity=0.168 Sum_probs=151.4
Q ss_pred eecccccccCCCccccccchhhcCCCCCCeeeccCCccc--ccCCccc-------cCCCCCEEeccCCCCCcccCccc--
Q 001889 509 LIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSIT--EVPSSIE-------LLTGLQLLNLSDCKDLVRLPSRI-- 577 (1000)
Q Consensus 509 l~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~--~lp~si~-------~L~~L~~L~L~~c~~l~~lp~~i-- 577 (1000)
....+.|+++++.. .+|..+... |+.|+|+++.+. .+|..+. .+++|++|+|++|.....+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34456777777654 666655433 788888887775 3555444 67888888888877555677765
Q ss_pred CCCCCCcEEEeeCCCCCcccCccccCc-----CCcceeecccccccCCC-ccccCCCCCcEEEccCCCCCCCCCCCcccc
Q 001889 578 NGLKSLKTLCLSGCSELENVPENMEKI-----ESLEELDISGTAIRQPP-SSIFLMKNLKELSFRGCKGPPSSTSCSWRF 651 (1000)
Q Consensus 578 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l-----~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~ 651 (1000)
..+++|++|+|++|. +..+|..++.+ ++|++|++++|.+..++ ..++.+++|++|++++|.....
T Consensus 118 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------- 188 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE-------- 188 (312)
T ss_dssp CCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH--------
T ss_pred hcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc--------
Confidence 778888888888754 44447666666 78888888888888775 6777888888888887763210
Q ss_pred CcccccCC--CCCCCCCCeecCCCCCCCCC-Ccc-cccCCCCcCcEEeCCCCCCcccc--ccccCCCCcCEEEEcCCcCC
Q 001889 652 PFNLMLPS--LSGLCSLTKLDLSDCNIQEG-AIP-RDIGNLSSLEELYLSKNSFVSLP--ATISLLFKLEELELEDCKRL 725 (1000)
Q Consensus 652 p~~~~~~~--l~~l~~L~~L~Ls~~~l~~~-~ip-~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L 725 (1000)
...+.. +..+++|++|+|++|.+... .++ ..+..+++|+.|+|++|.++..+ ..+..+++|+.|+|++|. +
T Consensus 189 --~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l 265 (312)
T 1wwl_A 189 --RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-L 265 (312)
T ss_dssp --HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-C
T ss_pred --hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-c
Confidence 001122 26777888888888877530 122 22346678888888888887654 345667888888888875 4
Q ss_pred CccCC-CCCCccEEeeeCCCCCcccCC
Q 001889 726 QSLPQ-LPPNIVSVSVNDCASLGKLSD 751 (1000)
Q Consensus 726 ~~lp~-l~~~L~~L~~~~C~~L~~l~~ 751 (1000)
+.+|. ++++|+.|+++++. ++.+|.
T Consensus 266 ~~ip~~~~~~L~~L~Ls~N~-l~~~p~ 291 (312)
T 1wwl_A 266 KQVPKGLPAKLSVLDLSYNR-LDRNPS 291 (312)
T ss_dssp SSCCSSCCSEEEEEECCSSC-CCSCCC
T ss_pred ChhhhhccCCceEEECCCCC-CCCChh
Confidence 46663 44678888887763 444443
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=185.87 Aligned_cols=187 Identities=21% Similarity=0.258 Sum_probs=118.7
Q ss_pred cccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCcc
Q 001889 522 KLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPEN 600 (1000)
Q Consensus 522 ~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 600 (1000)
.+..+|..+. ++|++|++++|.++.+|. .+..+++|++|+|++|......|..+.++++|++|++++| .+..+|..
T Consensus 42 ~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 118 (353)
T 2z80_A 42 SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSS 118 (353)
T ss_dssp TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHH
T ss_pred Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHh
Confidence 4556665443 467777777777776665 5677777777777776533333455677777777777764 34455544
Q ss_pred -ccCcCCcceeecccccccCCCc--cccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCC
Q 001889 601 -MEKIESLEELDISGTAIRQPPS--SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQ 677 (1000)
Q Consensus 601 -l~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~ 677 (1000)
++++++|++|++++|.+..+|. .+..+++|++|++++|..... ..+..+.++++|++|++++|.+.
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-----------~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-----------IQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-----------ECTTTTTTCCEEEEEEEEETTCC
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-----------cCHHHccCCCCCCEEECCCCCcC
Confidence 6677777777777777777765 566677777777777642111 01134566667777777777663
Q ss_pred CCCcccccCCCCcCcEEeCCCCCCccccccc-cCCCCcCEEEEcCCc
Q 001889 678 EGAIPRDIGNLSSLEELYLSKNSFVSLPATI-SLLFKLEELELEDCK 723 (1000)
Q Consensus 678 ~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~c~ 723 (1000)
. ..|..+..+++|++|++++|.+..+|..+ ..+++|+.|+|++|.
T Consensus 188 ~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 188 S-YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp E-ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred c-cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 2 34666667777777777777766666543 346667777776654
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=187.69 Aligned_cols=216 Identities=21% Similarity=0.192 Sum_probs=122.5
Q ss_pred ccccccCCCccccccch-hhcCCCCCCeeeccCCcccccC-CccccCCCCCEEeccCCCCCcccCcc-cCCCCCCcEEEe
Q 001889 512 NTTLVLSGCSKLMKFPE-ILRSMEDLSELFLDGTSITEVP-SSIELLTGLQLLNLSDCKDLVRLPSR-INGLKSLKTLCL 588 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~-~~~~l~~L~~L~L~~~~i~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~L 588 (1000)
.+.|+++++. +..+|. .+.++++|++|+|++|.+..++ ..+..+++|++|+|++|. +..+|.. +.++++|++|++
T Consensus 54 L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 54 VKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp CCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEEC
T ss_pred CcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEEC
Confidence 3456666553 333333 4555666666666666666553 345666666666666654 3344443 555666666666
Q ss_pred eCCCCCcccCc--cccCcCCcceeecccc-cccCC-CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCC
Q 001889 589 SGCSELENVPE--NMEKIESLEELDISGT-AIRQP-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLC 664 (1000)
Q Consensus 589 s~c~~l~~lp~--~l~~l~~L~~L~L~~~-~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~ 664 (1000)
++| .+..+|. .+..+++|++|++++| .+..+ +..+..+++|++|++++|..... .+..+..++
T Consensus 132 ~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~l~~l~ 198 (353)
T 2z80_A 132 LGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY------------EPKSLKSIQ 198 (353)
T ss_dssp TTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE------------CTTTTTTCS
T ss_pred CCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc------------CHHHHhccc
Confidence 654 3444544 4556666666666665 34444 34455566666666665542110 123344555
Q ss_pred CCCeecCCCCCCCCCCcccc-cCCCCcCcEEeCCCCCCc--------------------------------cccccccCC
Q 001889 665 SLTKLDLSDCNIQEGAIPRD-IGNLSSLEELYLSKNSFV--------------------------------SLPATISLL 711 (1000)
Q Consensus 665 ~L~~L~Ls~~~l~~~~ip~~-l~~l~~L~~L~Ls~n~l~--------------------------------~lp~~i~~l 711 (1000)
+|++|++++|.+.. +|.. +..+++|+.|+|++|.++ .+|..+..+
T Consensus 199 ~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 199 NVSHLILHMKQHIL--LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp EEEEEEEECSCSTT--HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred cCCeecCCCCcccc--chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 55555555555432 3322 223455555555555443 356678899
Q ss_pred CCcCEEEEcCCcCCCccCCC----CCCccEEeeeCCCC
Q 001889 712 FKLEELELEDCKRLQSLPQL----PPNIVSVSVNDCAS 745 (1000)
Q Consensus 712 ~~L~~L~L~~c~~L~~lp~l----~~~L~~L~~~~C~~ 745 (1000)
++|+.|+|++|. ++.+|.- .++|+.|++++++-
T Consensus 277 ~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 277 SGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCc
Confidence 999999999984 5677742 37899999998863
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=8.3e-17 Score=189.62 Aligned_cols=211 Identities=17% Similarity=0.118 Sum_probs=171.2
Q ss_pred cccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeC
Q 001889 511 ENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSG 590 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 590 (1000)
+.+.|+|++|......|..++.+++|++|+|++|.+..+++ ++.+++|++|+|++|. +..+|. .++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECcC
Confidence 56689999986555556788999999999999999987766 9999999999999986 666653 38999999999
Q ss_pred CCCCcccCccccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCC-CCCCCCe
Q 001889 591 CSELENVPENMEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLS-GLCSLTK 668 (1000)
Q Consensus 591 c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~-~l~~L~~ 668 (1000)
|. +..++. ..+++|+.|+|++|.+..+ |..++.+++|+.|++++|..... .+..+. .+++|+.
T Consensus 109 N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 109 NN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV------------NFAELAASSDTLEH 173 (487)
T ss_dssp SC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE------------EGGGGGGGTTTCCE
T ss_pred Cc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc------------ChHHHhhhCCcccE
Confidence 75 444443 3568899999999999988 66788999999999999874321 123343 6899999
Q ss_pred ecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCC---CCCccEEeeeCCCC
Q 001889 669 LDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQL---PPNIVSVSVNDCAS 745 (1000)
Q Consensus 669 L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---~~~L~~L~~~~C~~ 745 (1000)
|+|++|.+.. +|. +..+++|+.|+|++|.++.+|..+..+++|+.|+|++|. +..+|.. .++|+.|++.+|+-
T Consensus 174 L~Ls~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 174 LNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp EECTTSCCCE--EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCB
T ss_pred EecCCCcccc--ccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCC
Confidence 9999999865 443 446999999999999999999999999999999999975 5567743 36888999988764
Q ss_pred C
Q 001889 746 L 746 (1000)
Q Consensus 746 L 746 (1000)
.
T Consensus 250 ~ 250 (487)
T 3oja_A 250 H 250 (487)
T ss_dssp C
T ss_pred c
Confidence 3
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.3e-15 Score=165.18 Aligned_cols=192 Identities=23% Similarity=0.373 Sum_probs=157.8
Q ss_pred CCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccC-cccCCCCCCcEEEeeCCCCCcccCcc-ccCcCCcceee
Q 001889 534 EDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLP-SRINGLKSLKTLCLSGCSELENVPEN-MEKIESLEELD 611 (1000)
Q Consensus 534 ~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~ 611 (1000)
.+++.++++++.++.+|..+. ++|+.|+|++|. +..+| ..+.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEE
Confidence 357899999999999998664 789999999987 55555 47889999999999996 45666654 58899999999
Q ss_pred cccccccCCCc-cccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCccc-ccCCCC
Q 001889 612 ISGTAIRQPPS-SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPR-DIGNLS 689 (1000)
Q Consensus 612 L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~-~l~~l~ 689 (1000)
+++|.+..+|. .+..+++|++|++++|..... .+..+..+++|++|+|++|.+.. +|. .+..++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~ 157 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL------------PPRVFDSLTKLTYLSLGYNELQS--LPKGVFDKLT 157 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCT
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCee------------CHHHhCcCcCCCEEECCCCcCCc--cCHhHccCCc
Confidence 99999999865 467899999999999874321 12447889999999999999865 554 478999
Q ss_pred cCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCcCCCccCC----CCCCccEEeeeCCC
Q 001889 690 SLEELYLSKNSFVSLPA-TISLLFKLEELELEDCKRLQSLPQ----LPPNIVSVSVNDCA 744 (1000)
Q Consensus 690 ~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~----l~~~L~~L~~~~C~ 744 (1000)
+|+.|+|++|.++.+|. .+..+++|+.|+|++| .++.+|. -.++|+.|++.+++
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 99999999999998886 4789999999999998 4566663 23678888888775
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=1.6e-16 Score=193.20 Aligned_cols=223 Identities=20% Similarity=0.201 Sum_probs=186.2
Q ss_pred eeecccccccCCCccccccchhhcCCCCCCeeeccCCccccc---CCccccCCCCCEEeccCCCCCcccCcccCCCCCCc
Q 001889 508 VLIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEV---PSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLK 584 (1000)
Q Consensus 508 vl~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l---p~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 584 (1000)
.+...+.|++++|.....+ .+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..+|..+..+++|+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~ 402 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQ 402 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCC
T ss_pred CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCC
Confidence 3455668899988666655 456799999999999999866 7788999999999999987 777888899999999
Q ss_pred EEEeeCCCCCcccC-ccccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCC
Q 001889 585 TLCLSGCSELENVP-ENMEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSG 662 (1000)
Q Consensus 585 ~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~ 662 (1000)
+|++++|......| ..+..+++|++|++++|.+... |..+..+++|++|++++|.... ...+..+..
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~ 471 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-----------NTLSNVFAN 471 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG-----------GEECSCCTT
T ss_pred eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC-----------cchHHhhcc
Confidence 99999976555555 5789999999999999999875 7788999999999999986321 013467889
Q ss_pred CCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccc-cccccCCCCcCEEEEcCCcCCCccCC----CCCCccE
Q 001889 663 LCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSL-PATISLLFKLEELELEDCKRLQSLPQ----LPPNIVS 737 (1000)
Q Consensus 663 l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----l~~~L~~ 737 (1000)
+++|+.|+|++|.+.. ..|..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+ ++.+|. +|.+|+.
T Consensus 472 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAF 549 (606)
T ss_dssp CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCE
T ss_pred CCCCCEEECCCCcCCc-cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcE
Confidence 9999999999999853 5677899999999999999999976 7889999999999999986 667774 4567999
Q ss_pred EeeeCCCCC
Q 001889 738 VSVNDCASL 746 (1000)
Q Consensus 738 L~~~~C~~L 746 (1000)
|++.+++-.
T Consensus 550 l~l~~N~~~ 558 (606)
T 3vq2_A 550 FNLTNNSVA 558 (606)
T ss_dssp EECCSCCCC
T ss_pred EEccCCCcc
Confidence 999988644
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.68 E-value=5e-16 Score=186.88 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=61.0
Q ss_pred CCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCcccc---ccccCCCCcCEEEEcCCcCCCccCC----CCC
Q 001889 661 SGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLP---ATISLLFKLEELELEDCKRLQSLPQ----LPP 733 (1000)
Q Consensus 661 ~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp---~~i~~l~~L~~L~L~~c~~L~~lp~----l~~ 733 (1000)
..+++|++|++++|.+. +.+|..++.+++|+.|+|++|.++.+| ..+..+++|+.|+|++|..-..+|. ..+
T Consensus 350 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCC-TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccc-cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 56778888888888874 356777888888888888888887544 4677888888888888765443553 236
Q ss_pred CccEEeeeCCCC
Q 001889 734 NIVSVSVNDCAS 745 (1000)
Q Consensus 734 ~L~~L~~~~C~~ 745 (1000)
+|+.|++++|.-
T Consensus 429 ~L~~L~l~~n~l 440 (562)
T 3a79_B 429 SILVLNLSSNML 440 (562)
T ss_dssp TCCEEECCSSCC
T ss_pred cCCEEECCCCCC
Confidence 777777777653
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.68 E-value=6.4e-16 Score=184.11 Aligned_cols=126 Identities=21% Similarity=0.195 Sum_probs=89.3
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEe
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCL 588 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 588 (1000)
...+.|++++|......|..+.++++|++|+|++|.++.+ |..++.+++|++|+|++|. +..+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEec
Confidence 3455778887754444456777788888888888888766 5577888888888888875 5577766 7888888888
Q ss_pred eCCCCCc-ccCccccCcCCcceeecccccccCCCccccCCCCC--cEEEccCCCC
Q 001889 589 SGCSELE-NVPENMEKIESLEELDISGTAIRQPPSSIFLMKNL--KELSFRGCKG 640 (1000)
Q Consensus 589 s~c~~l~-~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L--~~L~L~~c~~ 640 (1000)
++|.... .+|..++++++|++|++++|.+.. ..+..+++| +.|++++|..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 8765444 466778888888888888877765 345555666 7777766653
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=9.7e-16 Score=166.25 Aligned_cols=200 Identities=22% Similarity=0.255 Sum_probs=153.1
Q ss_pred cCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCccee
Q 001889 531 RSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEEL 610 (1000)
Q Consensus 531 ~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 610 (1000)
..+++|+.|++.++.+..++. ++.+++|++|+|++|. +..++ .+..+++|++|++++|......+..++.+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 347889999999999887764 8889999999999987 55554 67899999999999975443334457899999999
Q ss_pred ecccccccCCCcc-ccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCC
Q 001889 611 DISGTAIRQPPSS-IFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLS 689 (1000)
Q Consensus 611 ~L~~~~i~~lp~~-i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~ 689 (1000)
++++|.+..+|.. +..+++|++|++++|..... .+..+..+++|+.|++++|++.. ..+..++.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~ 181 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL------------PKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLT 181 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCcc------------CHHHhccCccCCEEECCCCCcCc-cCHHHhcCCc
Confidence 9999999988654 68899999999999864321 11346788999999999999863 3445578899
Q ss_pred cCcEEeCCCCCCcccccc-ccCCCCcCEEEEcCCcCCCccCCCCCCccEEeeeCCCCCcccC
Q 001889 690 SLEELYLSKNSFVSLPAT-ISLLFKLEELELEDCKRLQSLPQLPPNIVSVSVNDCASLGKLS 750 (1000)
Q Consensus 690 ~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~l~~~L~~L~~~~C~~L~~l~ 750 (1000)
+|+.|+|++|.++.+|.. +..+++|+.|+|++|+.... +++|+.|++..+..-..+|
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----TTTTHHHHHHHHHTGGGBB
T ss_pred cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----CcHHHHHHHHHHhCCCccc
Confidence 999999999999987764 68899999999999864433 2355555555444333444
No 71
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.67 E-value=6.8e-16 Score=194.63 Aligned_cols=112 Identities=24% Similarity=0.196 Sum_probs=75.6
Q ss_pred eecccccccCCCcccccc-chhhcCCCCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCcccCcc--cCCCCCCc
Q 001889 509 LIENTTLVLSGCSKLMKF-PEILRSMEDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRLPSR--INGLKSLK 584 (1000)
Q Consensus 509 l~~~~~L~Ls~~~~l~~~-p~~~~~l~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~--i~~l~~L~ 584 (1000)
+.+.++|+|++|.....+ |..++++++|++|+|++|.+..+ |..++.+++|++|+|++|.....+|.. +.++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 444557777777555555 56677777777777777777755 666777777777777777654445544 67777777
Q ss_pred EEEeeCCCCCccc-CccccCcCCcceeecccccccCC
Q 001889 585 TLCLSGCSELENV-PENMEKIESLEELDISGTAIRQP 620 (1000)
Q Consensus 585 ~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~~~~i~~l 620 (1000)
+|+|++|...... +..++++++|++|+|++|.+...
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 7777776543332 24577777777777777766543
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=3.7e-16 Score=166.06 Aligned_cols=195 Identities=18% Similarity=0.216 Sum_probs=158.1
Q ss_pred cccccccCCCccccccch-hhcCCCCCCeeeccCCc-ccccCC-ccccCCCCCEEeccCCCCCcccC-cccCCCCCCcEE
Q 001889 511 ENTTLVLSGCSKLMKFPE-ILRSMEDLSELFLDGTS-ITEVPS-SIELLTGLQLLNLSDCKDLVRLP-SRINGLKSLKTL 586 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p~-~~~~l~~L~~L~L~~~~-i~~lp~-si~~L~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L 586 (1000)
..+.|+++++. +..+|. .+..+++|++|++++|. ++.+++ .+..+++|++|+|++|..+..+| ..+.++++|++|
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 45688999875 555554 78889999999999997 998886 68999999999999855577776 467899999999
Q ss_pred EeeCCCCCcccCccccCcCCcc---eeecccc-cccCCCc-cccCCCCCc-EEEccCCCCCCCCCCCccccCcccccCCC
Q 001889 587 CLSGCSELENVPENMEKIESLE---ELDISGT-AIRQPPS-SIFLMKNLK-ELSFRGCKGPPSSTSCSWRFPFNLMLPSL 660 (1000)
Q Consensus 587 ~Ls~c~~l~~lp~~l~~l~~L~---~L~L~~~-~i~~lp~-~i~~L~~L~-~L~L~~c~~~~~~~~~~~~~p~~~~~~~l 660 (1000)
++++|. +..+|. +..+.+|+ +|++++| .+..+|. .+..+++|+ .|++++|... .++...
T Consensus 111 ~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-------------~i~~~~ 175 (239)
T 2xwt_C 111 GIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-------------SVQGYA 175 (239)
T ss_dssp EEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-------------EECTTT
T ss_pred eCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-------------ccCHhh
Confidence 999964 666887 88888888 9999999 9998865 488899999 9999998742 122322
Q ss_pred CCCCCCCeecCCCCC-CCCCCcccccCCC-CcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcC
Q 001889 661 SGLCSLTKLDLSDCN-IQEGAIPRDIGNL-SSLEELYLSKNSFVSLPATISLLFKLEELELEDCKR 724 (1000)
Q Consensus 661 ~~l~~L~~L~Ls~~~-l~~~~ip~~l~~l-~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 724 (1000)
...++|+.|++++|. +.. ..+..+..+ ++|+.|+|++|.++.+|.. .+++|+.|+++++..
T Consensus 176 ~~~~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTCEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred cCCCCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 233789999999995 754 234568888 9999999999999999976 789999999998764
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=3.2e-16 Score=187.98 Aligned_cols=87 Identities=24% Similarity=0.331 Sum_probs=57.2
Q ss_pred CCCCCCCeecCCCCCCCCCCc---ccccCCCCcCcEEeCCCCCCccccc---cccCCCCcCEEEEcCCcCCCccCC---C
Q 001889 661 SGLCSLTKLDLSDCNIQEGAI---PRDIGNLSSLEELYLSKNSFVSLPA---TISLLFKLEELELEDCKRLQSLPQ---L 731 (1000)
Q Consensus 661 ~~l~~L~~L~Ls~~~l~~~~i---p~~l~~l~~L~~L~Ls~n~l~~lp~---~i~~l~~L~~L~L~~c~~L~~lp~---l 731 (1000)
..+++|+.|++++|.+.. .+ +..++.+++|+.|+|++|.++.+|. .+..+++|+.|+|++| .++.+|. .
T Consensus 331 ~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 408 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVE-EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQW 408 (549)
T ss_dssp HHCTTCCEEECCSSCCCH-HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCC
T ss_pred hcCccccEEEccCCcccc-ccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcc
Confidence 357788888888887743 22 2336677777778887777776652 4677777777777776 3556663 2
Q ss_pred CCCccEEeeeCCCCCcccC
Q 001889 732 PPNIVSVSVNDCASLGKLS 750 (1000)
Q Consensus 732 ~~~L~~L~~~~C~~L~~l~ 750 (1000)
+++|+.|++++|. ++.++
T Consensus 409 ~~~L~~L~Ls~N~-l~~l~ 426 (549)
T 2z81_A 409 PEKMRFLNLSSTG-IRVVK 426 (549)
T ss_dssp CTTCCEEECTTSC-CSCCC
T ss_pred cccccEEECCCCC-ccccc
Confidence 3667777777765 43333
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=1.2e-15 Score=188.07 Aligned_cols=225 Identities=20% Similarity=0.183 Sum_probs=130.4
Q ss_pred cccccCCCccccccchhhcCCCCCCeeeccCCccc-ccC-CccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeC
Q 001889 513 TTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSIT-EVP-SSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSG 590 (1000)
Q Consensus 513 ~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~-~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 590 (1000)
+.|++++|......|..+..+++|+.|+|++|.+. .+| ..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 35555555444444555666666666666666665 344 3466666666666666654344445566666666666666
Q ss_pred CCC--CcccCccccCcCCcceeecccccccCCCc-cccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCC
Q 001889 591 CSE--LENVPENMEKIESLEELDISGTAIRQPPS-SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLT 667 (1000)
Q Consensus 591 c~~--l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~ 667 (1000)
|.. +..+|..+..+++|++|++++|.+..+|. .+..+++|++|++++|....... ...| ......+.++++|+
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~-~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK---HANP-GGPIYFLKGLSHLH 539 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGS---TTST-TSCCCTTTTCTTCC
T ss_pred ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccch---hhcc-CCcchhhcCCCCCC
Confidence 542 24556666667777777777776666643 35666777777776665321000 0000 00012356666777
Q ss_pred eecCCCCCCCCCCccc-ccCCCCcCcEEeCCCCCCcccccc-ccCCCCcCEEEEcCCcCCCccCC-----CCCCccEEee
Q 001889 668 KLDLSDCNIQEGAIPR-DIGNLSSLEELYLSKNSFVSLPAT-ISLLFKLEELELEDCKRLQSLPQ-----LPPNIVSVSV 740 (1000)
Q Consensus 668 ~L~Ls~~~l~~~~ip~-~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~-----l~~~L~~L~~ 740 (1000)
.|+|++|++.. +|. .+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++| .++.++. ..++|+.|++
T Consensus 540 ~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 540 ILNLESNGFDE--IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp EEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEEC
T ss_pred EEECCCCCCCC--CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEc
Confidence 77777776653 554 466677777777777777766654 356677777777766 3444442 2356666666
Q ss_pred eCCC
Q 001889 741 NDCA 744 (1000)
Q Consensus 741 ~~C~ 744 (1000)
.+++
T Consensus 617 ~~N~ 620 (680)
T 1ziw_A 617 RFNP 620 (680)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 6654
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=9.9e-16 Score=166.18 Aligned_cols=201 Identities=16% Similarity=0.159 Sum_probs=159.2
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEee
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLS 589 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 589 (1000)
...+.|+++++. +..++. +..+++|++|+|++|.+..++ .+..+++|++|+|++|......|..+.++++|++|+++
T Consensus 41 ~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cceeeeeeCCCC-cccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 344577888764 555554 567999999999999999875 68999999999999987443334457899999999999
Q ss_pred CCCCCcccCccccCcCCcceeecccccccCCCcc-ccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCe
Q 001889 590 GCSELENVPENMEKIESLEELDISGTAIRQPPSS-IFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTK 668 (1000)
Q Consensus 590 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~ 668 (1000)
+|......+..++.+++|++|++++|.+..+|.. +..+++|+.|++++|..... .+..+..+++|+.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL------------PEGVFDKLTQLKD 185 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCE
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc------------CHHHhcCCccCCE
Confidence 9764444445579999999999999999998654 68899999999999974321 1134688999999
Q ss_pred ecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCCC
Q 001889 669 LDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQLP 732 (1000)
Q Consensus 669 L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~ 732 (1000)
|++++|++.. ..|..+..+++|+.|+|++|.+. +.+++|+.|++..+.....+|...
T Consensus 186 L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 186 LRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp EECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred EECCCCcCCc-cCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 9999999864 44556899999999999999775 456788889888887777777543
No 76
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=1.8e-15 Score=177.65 Aligned_cols=137 Identities=22% Similarity=0.316 Sum_probs=68.4
Q ss_pred ccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCc------ccc---CcccccCCCCCCCCCCeecC
Q 001889 601 MEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCS------WRF---PFNLMLPSLSGLCSLTKLDL 671 (1000)
Q Consensus 601 l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~------~~~---p~~~~~~~l~~l~~L~~L~L 671 (1000)
+.++++|++|++++|.+..++ .+..+++|++|++++|.......... ..+ .+.. .+.+..+++|+.|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDL 250 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEEC
T ss_pred hccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc-chhhhcCCCCCEEEC
Confidence 445555666666666555543 24555556666665554321100000 000 0000 123445566666666
Q ss_pred CCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCC--CCCCccEEeeeCCC
Q 001889 672 SDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQ--LPPNIVSVSVNDCA 744 (1000)
Q Consensus 672 s~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~--l~~~L~~L~~~~C~ 744 (1000)
++|.+.. ++. +..+++|+.|++++|.++.+|. +..+++|+.|+|++|. +..++. ..++|+.|++++|.
T Consensus 251 ~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 251 ANNQISN--LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CSSCCCC--CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSC
T ss_pred CCCcccc--chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCc
Confidence 6666543 222 5566666666666666665554 5566666666666653 333332 12566666666653
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=2.3e-15 Score=161.20 Aligned_cols=174 Identities=23% Similarity=0.271 Sum_probs=133.0
Q ss_pred CCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecc
Q 001889 534 EDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDIS 613 (1000)
Q Consensus 534 ~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 613 (1000)
...+.++++++.++.+|..+. ++|+.|+|++|......|..+.++++|++|+|++|......|..+..+++|++|+|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456788888888888887665 688888888877555455568888889999998865444445567888889999999
Q ss_pred cccccCCC-ccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCccc-ccCCCCcC
Q 001889 614 GTAIRQPP-SSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPR-DIGNLSSL 691 (1000)
Q Consensus 614 ~~~i~~lp-~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~-~l~~l~~L 691 (1000)
+|.+..+| ..+..+++|++|++++|..... .+..+..+++|+.|+|++|++.. +|. .+..+++|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L 157 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSL------------PSGVFDRLTKLKELRLNTNQLQS--IPAGAFDKLTNL 157 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCc------------ChhHhccCCcccEEECcCCcCCc--cCHHHcCcCcCC
Confidence 88888885 4567788888888888864321 01235778888999998888854 444 68888899
Q ss_pred cEEeCCCCCCccccc-cccCCCCcCEEEEcCCc
Q 001889 692 EELYLSKNSFVSLPA-TISLLFKLEELELEDCK 723 (1000)
Q Consensus 692 ~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 723 (1000)
+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 999999998887775 57788888888888875
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=173.75 Aligned_cols=198 Identities=19% Similarity=0.182 Sum_probs=114.9
Q ss_pred CCCCCeeeccCCccc-ccCCcc--ccCCCCCEEeccCCCCCcccC----cccCCCCCCcEEEeeCCCCCcccCccccCcC
Q 001889 533 MEDLSELFLDGTSIT-EVPSSI--ELLTGLQLLNLSDCKDLVRLP----SRINGLKSLKTLCLSGCSELENVPENMEKIE 605 (1000)
Q Consensus 533 l~~L~~L~L~~~~i~-~lp~si--~~L~~L~~L~L~~c~~l~~lp----~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~ 605 (1000)
+++|++|+|++|.+. ..|..+ ..+++|++|+|++|......| ..+..+++|++|+|++|......|..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 455777777777665 344444 667777777777766443322 2234566777777776654444445666777
Q ss_pred CcceeecccccccC---C--CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccC-CCCCCCCCCeecCCCCCCCCC
Q 001889 606 SLEELDISGTAIRQ---P--PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLP-SLSGLCSLTKLDLSDCNIQEG 679 (1000)
Q Consensus 606 ~L~~L~L~~~~i~~---l--p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~-~l~~l~~L~~L~Ls~~~l~~~ 679 (1000)
+|++|+|++|.+.. + +..++.+++|++|++++|..... ...+. .+..+++|++|+|++|.+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----------~~~~~~l~~~l~~L~~L~Ls~N~l~~- 238 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP----------TGVCAALAAAGVQPHSLDLSHNSLRA- 238 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----------HHHHHHHHHHTCCCSSEECTTSCCCC-
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----------HHHHHHHHhcCCCCCEEECCCCCCCc-
Confidence 77777777776543 2 22235666777777776653210 00001 13455677777777777643
Q ss_pred CcccccCCC---CcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccC--CCCCCccEEeeeCCC
Q 001889 680 AIPRDIGNL---SSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLP--QLPPNIVSVSVNDCA 744 (1000)
Q Consensus 680 ~ip~~l~~l---~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp--~l~~~L~~L~~~~C~ 744 (1000)
..|..+..+ ++|++|+|++|.++.+|..+. ++|+.|+|++|+ ++.+| ...++|+.|++++++
T Consensus 239 ~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 239 TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCCTTSCCCCSCEECSSTT
T ss_pred cchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCchhhhCCCccEEECcCCC
Confidence 335555554 577777777777777776553 677777777664 33333 333566666666553
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.65 E-value=8.2e-16 Score=185.26 Aligned_cols=215 Identities=23% Similarity=0.238 Sum_probs=135.1
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEee
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLS 589 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 589 (1000)
.+.+.|++++|. +..+|..+..+ +|+.|+++++.+..+|. ..+++|+.|++++|......+. ..+++|++|+++
T Consensus 282 ~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~ 355 (570)
T 2z63_A 282 TNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLS 355 (570)
T ss_dssp TTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECC
T ss_pred CcccEEEecCcc-chhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCc
Confidence 445567777763 45677777767 78888888877777765 4667777777777664444443 467777777777
Q ss_pred CCCCCccc---CccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCC
Q 001889 590 GCSELENV---PENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSL 666 (1000)
Q Consensus 590 ~c~~l~~l---p~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L 666 (1000)
+|. +... |..+..+++|++|++++|.+..+|..+..+++|++|++++|...... ....+..+++|
T Consensus 356 ~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~~l~~L 423 (570)
T 2z63_A 356 RNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-----------EFSVFLSLRNL 423 (570)
T ss_dssp SSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCT-----------TSCTTTTCTTC
T ss_pred CCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccccc-----------chhhhhcCCCC
Confidence 754 3322 55667777777777777777777666777777777777776532110 01235556666
Q ss_pred CeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCc--cccccccCCCCcCEEEEcCCcCCCccCCC---CCCccEEeee
Q 001889 667 TKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFV--SLPATISLLFKLEELELEDCKRLQSLPQL---PPNIVSVSVN 741 (1000)
Q Consensus 667 ~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---~~~L~~L~~~ 741 (1000)
+.|++++|.+. +..|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|......|.. .++|+.|+++
T Consensus 424 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 424 IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 66666666653 234555666666666666666665 46666666666666666666433322321 2566666666
Q ss_pred CC
Q 001889 742 DC 743 (1000)
Q Consensus 742 ~C 743 (1000)
+|
T Consensus 503 ~n 504 (570)
T 2z63_A 503 SN 504 (570)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=3e-15 Score=180.12 Aligned_cols=126 Identities=19% Similarity=0.115 Sum_probs=86.3
Q ss_pred ecccccccCCCccccccchhhcCCCCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEe
Q 001889 510 IENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCL 588 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 588 (1000)
...+.|++++|......|..+.++++|++|+|++|.++.+ |..+..+++|++|+|++|. +..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEEC
Confidence 3455778877754434445777788888888888888766 4557778888888888766 5677766 7788888888
Q ss_pred eCCCCCc-ccCccccCcCCcceeecccccccCCCccccCCCCC--cEEEccCCCC
Q 001889 589 SGCSELE-NVPENMEKIESLEELDISGTAIRQPPSSIFLMKNL--KELSFRGCKG 640 (1000)
Q Consensus 589 s~c~~l~-~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L--~~L~L~~c~~ 640 (1000)
++|.... .+|..++++++|++|++++|.+... .+..+++| +.|++++|..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 8764332 2346777888888888888777653 33444444 7777776654
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=6.2e-16 Score=171.81 Aligned_cols=214 Identities=15% Similarity=0.137 Sum_probs=169.3
Q ss_pred eeecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEE
Q 001889 508 VLIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLC 587 (1000)
Q Consensus 508 vl~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 587 (1000)
-+.+.+.|+|++|. +...++ +..+++|++|+|++|.++.++. +++|++|++++|. +..++.. .+++|++|+
T Consensus 56 ~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~ 126 (317)
T 3o53_A 56 PFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIY 126 (317)
T ss_dssp TCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSC-CSEEEEC--CCSSCEEEE
T ss_pred CCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCc-cCCcCcc--ccCCCCEEE
Confidence 44567799999986 444444 7789999999999999988764 4899999999987 5555543 478999999
Q ss_pred eeCCCCCcccCccccCcCCcceeecccccccCC-Cccc-cCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCC
Q 001889 588 LSGCSELENVPENMEKIESLEELDISGTAIRQP-PSSI-FLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCS 665 (1000)
Q Consensus 588 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i-~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~ 665 (1000)
+++|......|..++.+++|++|++++|.+..+ |..+ ..+++|++|++++|.... + +....+++
T Consensus 127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~-~~~~~l~~ 192 (317)
T 3o53_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-------------V-KGQVVFAK 192 (317)
T ss_dssp CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-------------E-ECCCCCTT
T ss_pred CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-------------c-cccccccc
Confidence 999765554466788999999999999999887 4445 478999999999997432 1 23345889
Q ss_pred CCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCC-CccCCC---CCCccEEeee
Q 001889 666 LTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRL-QSLPQL---PPNIVSVSVN 741 (1000)
Q Consensus 666 L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L-~~lp~l---~~~L~~L~~~ 741 (1000)
|+.|+|++|.+.. +|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+.. ..+|.. .++|+.|++.
T Consensus 193 L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 193 LKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCEEECCCCcCCc--chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 9999999999975 777899999999999999999999999999999999999998765 344422 2455566665
Q ss_pred CCCCC
Q 001889 742 DCASL 746 (1000)
Q Consensus 742 ~C~~L 746 (1000)
+|..+
T Consensus 271 ~~~~l 275 (317)
T 3o53_A 271 TVKKL 275 (317)
T ss_dssp HHHHH
T ss_pred Cchhc
Confidence 55444
No 82
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.64 E-value=2.6e-15 Score=176.17 Aligned_cols=190 Identities=24% Similarity=0.370 Sum_probs=108.7
Q ss_pred hcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcce
Q 001889 530 LRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEE 609 (1000)
Q Consensus 530 ~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 609 (1000)
+.++++|+.|++++|.+..++. +..+++|++|++++|.. ..++. +..+++|++|++++|. +..++ .+..+++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~ 247 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQI-SDITP-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTD 247 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCC-CCCGG-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSE
T ss_pred hccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcc-ccccc-ccccCCCCEEECCCCC-cccch-hhhcCCCCCE
Confidence 4556666666666666665543 56666666666666553 23322 4556666666666643 33333 3556666666
Q ss_pred eecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCC
Q 001889 610 LDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLS 689 (1000)
Q Consensus 610 L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~ 689 (1000)
|++++|.+..++. +..+++|+.|++++|.... . +.+..+++|+.|++++|.+.. ++. +..++
T Consensus 248 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-------------~-~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~ 309 (466)
T 1o6v_A 248 LDLANNQISNLAP-LSGLTKLTELKLGANQISN-------------I-SPLAGLTALTNLELNENQLED--ISP-ISNLK 309 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC-------------C-GGGTTCTTCSEEECCSSCCSC--CGG-GGGCT
T ss_pred EECCCCccccchh-hhcCCCCCEEECCCCccCc-------------c-ccccCCCccCeEEcCCCcccC--chh-hcCCC
Confidence 6666666666544 5566666666666665321 1 114556666666666666543 332 55666
Q ss_pred cCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCC--CCCccEEeeeCCC
Q 001889 690 SLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQL--PPNIVSVSVNDCA 744 (1000)
Q Consensus 690 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--~~~L~~L~~~~C~ 744 (1000)
+|+.|+|++|.++.++. +..+++|+.|++++|+ +..++.+ .++|+.|++.+|.
T Consensus 310 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp TCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC
T ss_pred CCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCc
Confidence 66666666666665553 5566666666666653 3333322 2566666666654
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=3.6e-15 Score=179.45 Aligned_cols=208 Identities=25% Similarity=0.259 Sum_probs=154.0
Q ss_pred eeecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEE
Q 001889 508 VLIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLC 587 (1000)
Q Consensus 508 vl~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 587 (1000)
.+.+.++|+|++|. +..+|. .+++|++|+|++|.++.+|. .+++|+.|++++|. +..+|.. +++|++|+
T Consensus 79 ~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~ 147 (622)
T 3g06_A 79 LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELS 147 (622)
T ss_dssp CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEE
T ss_pred cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEE
Confidence 45667799999985 777887 58999999999999999987 67899999999986 7778874 58999999
Q ss_pred eeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCC-Cc---ccc---CcccccCCC
Q 001889 588 LSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTS-CS---WRF---PFNLMLPSL 660 (1000)
Q Consensus 588 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~-~~---~~~---p~~~~~~~l 660 (1000)
|++| .+..+|.. +.+|+.|++++|.+..+| ..+++|+.|++++|....-... .. +.+ .+..++
T Consensus 148 Ls~N-~l~~l~~~---~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~--- 217 (622)
T 3g06_A 148 VSDN-QLASLPAL---PSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLP--- 217 (622)
T ss_dssp CCSS-CCSCCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC---
T ss_pred CcCC-cCCCcCCc---cCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccC---
Confidence 9986 56667653 355777777777777766 3456777777777654321110 00 000 011111
Q ss_pred CCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCC---CCCccE
Q 001889 661 SGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQL---PPNIVS 737 (1000)
Q Consensus 661 ~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---~~~L~~ 737 (1000)
..+++|+.|+|++|++.. +| ..+++|+.|+|++|.++.+|. .+++|+.|+|++|. +..+|.. .++|+.
T Consensus 218 ~~~~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 218 ALPSGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETT 288 (622)
T ss_dssp CCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCE
T ss_pred CCCCCCCEEEccCCccCc--CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCE
Confidence 134789999999999875 77 567899999999999999997 77899999999984 5677742 377888
Q ss_pred EeeeCCCC
Q 001889 738 VSVNDCAS 745 (1000)
Q Consensus 738 L~~~~C~~ 745 (1000)
|++++|+-
T Consensus 289 L~L~~N~l 296 (622)
T 3g06_A 289 VNLEGNPL 296 (622)
T ss_dssp EECCSCCC
T ss_pred EEecCCCC
Confidence 99988863
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=1.2e-15 Score=167.23 Aligned_cols=169 Identities=25% Similarity=0.397 Sum_probs=142.7
Q ss_pred cCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCccee
Q 001889 531 RSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEEL 610 (1000)
Q Consensus 531 ~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 610 (1000)
..+++|+.|+++++.+..++. +..+++|++|+|++|. +..++. +.++++|++|++++| .+..+|. +..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence 347889999999999998865 8899999999999986 566665 889999999999986 4566654 8899999999
Q ss_pred ecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCc
Q 001889 611 DISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSS 690 (1000)
Q Consensus 611 ~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~ 690 (1000)
++++|.+..+ ..+..+++|+.|++++|.... + +.+..+++|+.|++++|.+.. ++. +..+++
T Consensus 118 ~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~-------------~-~~l~~l~~L~~L~L~~N~l~~--~~~-l~~l~~ 179 (291)
T 1h6t_A 118 SLEHNGISDI-NGLVHLPQLESLYLGNNKITD-------------I-TVLSRLTKLDTLSLEDNQISD--IVP-LAGLTK 179 (291)
T ss_dssp ECTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-------------C-GGGGGCTTCSEEECCSSCCCC--CGG-GTTCTT
T ss_pred ECCCCcCCCC-hhhcCCCCCCEEEccCCcCCc-------------c-hhhccCCCCCEEEccCCcccc--chh-hcCCCc
Confidence 9999999887 468889999999999987432 1 457788999999999999865 444 889999
Q ss_pred CcEEeCCCCCCccccccccCCCCcCEEEEcCCc
Q 001889 691 LEELYLSKNSFVSLPATISLLFKLEELELEDCK 723 (1000)
Q Consensus 691 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 723 (1000)
|+.|+|++|.++.+|. +..+++|+.|+|++|+
T Consensus 180 L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 180 LQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred cCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 9999999999999885 8899999999999875
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=8.5e-16 Score=170.12 Aligned_cols=195 Identities=19% Similarity=0.213 Sum_probs=126.2
Q ss_pred ccccccCCCccccccchhh--cCCCCCCeeeccCCcccccC-----CccccCCCCCEEeccCCCCCcccCcccCCCCCCc
Q 001889 512 NTTLVLSGCSKLMKFPEIL--RSMEDLSELFLDGTSITEVP-----SSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLK 584 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~--~~l~~L~~L~L~~~~i~~lp-----~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 584 (1000)
.+.|++++|......|..+ ..+++|++|+|++|.+.... ..+..+++|++|+|++|......|..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4567777776555566655 66777777777777776422 1234577777777777765444456677777777
Q ss_pred EEEeeCCCCCcc--cC--ccccCcCCcceeecccccccCCCcc----ccCCCCCcEEEccCCCCCCCCCCCccccCcccc
Q 001889 585 TLCLSGCSELEN--VP--ENMEKIESLEELDISGTAIRQPPSS----IFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLM 656 (1000)
Q Consensus 585 ~L~Ls~c~~l~~--lp--~~l~~l~~L~~L~L~~~~i~~lp~~----i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~ 656 (1000)
+|+|++|...+. ++ ..++.+++|++|+|++|.++.++.. +..+++|++|++++|..... .
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~------------~ 240 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT------------V 240 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC------------C
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc------------c
Confidence 777777654331 22 2235677777777777777655432 35667777777777764321 0
Q ss_pred cCCCCCC---CCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCc
Q 001889 657 LPSLSGL---CSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCK 723 (1000)
Q Consensus 657 ~~~l~~l---~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 723 (1000)
++.+..+ ++|++|+|++|++.. +|..+. ++|+.|+|++|.++.+|. +..+++|+.|+|++|+
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGLEQ--VPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCCCS--CCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred hhhHHhccCcCcCCEEECCCCCCCc--hhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 1223333 577777777777763 666653 677777777777777764 5677777777777765
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=5.3e-17 Score=181.88 Aligned_cols=217 Identities=18% Similarity=0.211 Sum_probs=160.6
Q ss_pred ccccCCCccccccchhhcCC--CCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcc-cCcccCCCCCCcEEEeeC
Q 001889 514 TLVLSGCSKLMKFPEILRSM--EDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVR-LPSRINGLKSLKTLCLSG 590 (1000)
Q Consensus 514 ~L~Ls~~~~l~~~p~~~~~l--~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~ 590 (1000)
.++++++... |..+..+ ++|+.|+++++.+...+..+..+++|++|+|++|..... +|..+..+++|++|++++
T Consensus 51 ~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 51 TLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp EEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred eeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 4666665322 4555556 789999999988887777788889999999998874333 777788889999999998
Q ss_pred CCCCcccCccccCcCCcceeecccc-cccC--CCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCC-CC
Q 001889 591 CSELENVPENMEKIESLEELDISGT-AIRQ--PPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLC-SL 666 (1000)
Q Consensus 591 c~~l~~lp~~l~~l~~L~~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~-~L 666 (1000)
|......|..+..+++|++|++++| .++. ++..+..+++|++|++++|..... ..++..+..++ +|
T Consensus 128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~----------~~~~~~~~~l~~~L 197 (336)
T 2ast_B 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE----------KHVQVAVAHVSETI 197 (336)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH----------HHHHHHHHHSCTTC
T ss_pred cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh----------HHHHHHHHhcccCC
Confidence 8655567777888899999999988 5663 566677888999999988832211 01223456677 89
Q ss_pred CeecCCCC--CCCCCCcccccCCCCcCcEEeCCCCC-Cc-cccccccCCCCcCEEEEcCCcCCCcc--C--CCCCCccEE
Q 001889 667 TKLDLSDC--NIQEGAIPRDIGNLSSLEELYLSKNS-FV-SLPATISLLFKLEELELEDCKRLQSL--P--QLPPNIVSV 738 (1000)
Q Consensus 667 ~~L~Ls~~--~l~~~~ip~~l~~l~~L~~L~Ls~n~-l~-~lp~~i~~l~~L~~L~L~~c~~L~~l--p--~l~~~L~~L 738 (1000)
++|++++| .+.+..+|..+..+++|+.|+|++|. ++ ..+..+..+++|+.|+|++|..+..- . .-.++|+.|
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 99999988 45445577777888999999999998 54 56667888899999999998644321 1 124788888
Q ss_pred eeeCC
Q 001889 739 SVNDC 743 (1000)
Q Consensus 739 ~~~~C 743 (1000)
++.+|
T Consensus 278 ~l~~~ 282 (336)
T 2ast_B 278 QVFGI 282 (336)
T ss_dssp ECTTS
T ss_pred eccCc
Confidence 88888
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=2.6e-15 Score=184.98 Aligned_cols=235 Identities=23% Similarity=0.214 Sum_probs=137.0
Q ss_pred eecccccccCCCccccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEE
Q 001889 509 LIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLC 587 (1000)
Q Consensus 509 l~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 587 (1000)
+...++|+|++|......|..++++++|++|+|++|.+..+|. .++.+++|++|+|++|......|..++++++|++|+
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 3445567777765444456666677777777777777777776 477777777777777653333335577777777777
Q ss_pred eeCCCCCcccCccccCcCCcceeecccccccCCCcc-c--cCCCCCcEEEccCCCCCCCCCCCccccC------------
Q 001889 588 LSGCSELENVPENMEKIESLEELDISGTAIRQPPSS-I--FLMKNLKELSFRGCKGPPSSTSCSWRFP------------ 652 (1000)
Q Consensus 588 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i--~~L~~L~~L~L~~c~~~~~~~~~~~~~p------------ 652 (1000)
+++|......|..++++++|++|++++|.+..++.. + ..+++|+.|++++|.............+
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 777655555556667777777777777777666432 2 2456777777777653221110000000
Q ss_pred --------------------------c-ccccCCCCCCC--CCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCcc
Q 001889 653 --------------------------F-NLMLPSLSGLC--SLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVS 703 (1000)
Q Consensus 653 --------------------------~-~~~~~~l~~l~--~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~ 703 (1000)
+ ...+..+..++ +|+.|+|++|.+.. ..|..++.+++|++|+|++|.+..
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCc
Confidence 0 00012233332 36667776666532 334556667777777777776664
Q ss_pred c-cccccCCCCcCEEEEcCCcCCC-----ccCC-------CCCCccEEeeeCCC
Q 001889 704 L-PATISLLFKLEELELEDCKRLQ-----SLPQ-------LPPNIVSVSVNDCA 744 (1000)
Q Consensus 704 l-p~~i~~l~~L~~L~L~~c~~L~-----~lp~-------l~~~L~~L~~~~C~ 744 (1000)
+ |..+..+++|+.|+|++|..-. .+|. ..++|+.|++++|.
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 4 3456667777777776553221 2221 12567777777664
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.63 E-value=1.4e-15 Score=177.32 Aligned_cols=206 Identities=20% Similarity=0.262 Sum_probs=135.7
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeeccCCccc-ccCCccccCCCC-------------CEEeccCCCCCcccCccc
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSIT-EVPSSIELLTGL-------------QLLNLSDCKDLVRLPSRI 577 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~-~lp~si~~L~~L-------------~~L~L~~c~~l~~lp~~i 577 (1000)
.+.|+++++. ++.+|..++++++|++|+++++.+. .+|.+++.+.+| ++|++++|. +..+|..
T Consensus 13 L~~L~l~~n~-l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~- 89 (454)
T 1jl5_A 13 LQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC-
T ss_pred chhhhcccCc-hhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC-
Confidence 3457777764 5888888888888888888888876 788888877754 888888876 6666662
Q ss_pred CCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCccccc
Q 001889 578 NGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLML 657 (1000)
Q Consensus 578 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~ 657 (1000)
.++|++|++++| .+..+|.. +.+|++|++++|.+..+|.. .++|++|++++|... .+
T Consensus 90 --~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-------------~l- 146 (454)
T 1jl5_A 90 --PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-------------KL- 146 (454)
T ss_dssp --CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-------------SC-
T ss_pred --cCCCCEEEccCC-cCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-------------CC-
Confidence 467888888875 45557754 36788888888888776542 267888888887632 12
Q ss_pred CCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCCCCCccE
Q 001889 658 PSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQLPPNIVS 737 (1000)
Q Consensus 658 ~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~~~L~~ 737 (1000)
+.++.+++|++|++++|.+.. +|..+ ++|++|++++|.++.+| .+..+++|+.|++++|. +..+|..+++|+.
T Consensus 147 p~~~~l~~L~~L~l~~N~l~~--lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~ 219 (454)
T 1jl5_A 147 PELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLES 219 (454)
T ss_dssp CCCTTCTTCCEEECCSSCCSC--CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCE
T ss_pred cccCCCCCCCEEECCCCcCcc--cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCcCcccE
Confidence 247788888888888888754 66543 47888888888888887 57888888888888874 5567777788888
Q ss_pred EeeeCCCCCcccCC
Q 001889 738 VSVNDCASLGKLSD 751 (1000)
Q Consensus 738 L~~~~C~~L~~l~~ 751 (1000)
|++++| .++.+|.
T Consensus 220 L~l~~n-~l~~lp~ 232 (454)
T 1jl5_A 220 IVAGNN-ILEELPE 232 (454)
T ss_dssp EECCSS-CCSSCCC
T ss_pred EECcCC-cCCcccc
Confidence 888887 3445553
No 89
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.62 E-value=8e-15 Score=178.78 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=60.4
Q ss_pred CCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccc-cccccCCCCcCEEEEcCCcCCCccCCC----CCCccEE
Q 001889 664 CSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSL-PATISLLFKLEELELEDCKRLQSLPQL----PPNIVSV 738 (1000)
Q Consensus 664 ~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l----~~~L~~L 738 (1000)
++|+.|+|++|++.....|..+..+++|+.|+|++|.++.+ |..+.++++|+.|+|++|+ ++.++.. .++|+.|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEE
Confidence 34444445444433334567788899999999999999977 5678999999999999984 6666532 3789999
Q ss_pred eeeCCC
Q 001889 739 SVNDCA 744 (1000)
Q Consensus 739 ~~~~C~ 744 (1000)
+++++.
T Consensus 548 ~Ls~N~ 553 (635)
T 4g8a_A 548 DYSLNH 553 (635)
T ss_dssp ECTTSC
T ss_pred ECCCCc
Confidence 999875
No 90
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.62 E-value=9.8e-15 Score=184.02 Aligned_cols=235 Identities=21% Similarity=0.189 Sum_probs=168.2
Q ss_pred eeecccccccCCCccccccchhhcCCCCCCeeeccCCc-cccc-CCccccCCCCCEEeccCCCCCcccCcccCCCCCCcE
Q 001889 508 VLIENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTS-ITEV-PSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKT 585 (1000)
Q Consensus 508 vl~~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~-i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 585 (1000)
.....+.|+|++|..-...|..+.++++|++|+|++|. +..+ |..++++++|++|+|++|......|..+.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 44566789999987555567889999999999999984 4566 677999999999999999866666899999999999
Q ss_pred EEeeCCCCCcccCcc--ccCcCCcceeecccccccCC--CccccCCCCCcEEEccCCCCCCCCC--C--------Ccccc
Q 001889 586 LCLSGCSELENVPEN--MEKIESLEELDISGTAIRQP--PSSIFLMKNLKELSFRGCKGPPSST--S--------CSWRF 651 (1000)
Q Consensus 586 L~Ls~c~~l~~lp~~--l~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~c~~~~~~~--~--------~~~~~ 651 (1000)
|+|++|.....+|.. ++++++|++|+|++|.+..+ +..++.+++|++|++++|....... . ....+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999998666556665 89999999999999999887 3578999999999999986432110 0 00000
Q ss_pred ---Cc-ccccCCCC------------------------------------------------------------------
Q 001889 652 ---PF-NLMLPSLS------------------------------------------------------------------ 661 (1000)
Q Consensus 652 ---p~-~~~~~~l~------------------------------------------------------------------ 661 (1000)
.+ ...+..+.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 00 00000111
Q ss_pred C--CCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccc-cccccCCCCcCEEEEcCCcCCCccCC---CCCCc
Q 001889 662 G--LCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSL-PATISLLFKLEELELEDCKRLQSLPQ---LPPNI 735 (1000)
Q Consensus 662 ~--l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~---l~~~L 735 (1000)
+ .++|+.|+|++|.+.. ..|..+..+++|+.|+|++|.+..+ |..+..+++|+.|+|++|..-...|. -.++|
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred ccccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 1 1456666666666532 3456677778888888888888765 44677888888888888753322232 23678
Q ss_pred cEEeeeCC
Q 001889 736 VSVSVNDC 743 (1000)
Q Consensus 736 ~~L~~~~C 743 (1000)
+.|++++|
T Consensus 341 ~~L~L~~N 348 (844)
T 3j0a_A 341 AYIDLQKN 348 (844)
T ss_dssp CEEECCSC
T ss_pred CEEECCCC
Confidence 88888876
No 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=1.3e-14 Score=169.04 Aligned_cols=196 Identities=23% Similarity=0.332 Sum_probs=112.5
Q ss_pred cccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeC
Q 001889 511 ENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSG 590 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 590 (1000)
+.+.|+++++. +..+|.. +++|++|++++|.+..+|.. .++|++|++++|. +..+| .++++++|++|++++
T Consensus 92 ~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 92 HLESLVASCNS-LTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TCSEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCS
T ss_pred CCCEEEccCCc-CCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCC
Confidence 44566666653 3445543 35677777777666665542 2567777777765 44566 466777777777776
Q ss_pred CCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeec
Q 001889 591 CSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLD 670 (1000)
Q Consensus 591 c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~ 670 (1000)
| .+..+|..+ .+|++|++++|.+..+| .++.+++|++|++++|....- +. ..++|+.|+
T Consensus 163 N-~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l-------------~~---~~~~L~~L~ 221 (454)
T 1jl5_A 163 N-SLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKL-------------PD---LPLSLESIV 221 (454)
T ss_dssp S-CCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSC-------------CC---CCTTCCEEE
T ss_pred C-cCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcC-------------CC---CcCcccEEE
Confidence 5 344565443 36777777777777666 466777777777776653211 01 113555666
Q ss_pred CCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCCCCCccEEeeeCC
Q 001889 671 LSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQLPPNIVSVSVNDC 743 (1000)
Q Consensus 671 Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~~~L~~L~~~~C 743 (1000)
+++|.+.. +|. ++.+++|+.|++++|.++.+|.. +++|+.|++++|. +..+|..+++|+.|++++|
T Consensus 222 l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 222 AGNNILEE--LPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp CCSSCCSS--CCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred CcCCcCCc--ccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 66655542 442 55556666666666655555532 2455555555543 3445555555555555554
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=4.9e-15 Score=166.95 Aligned_cols=225 Identities=23% Similarity=0.238 Sum_probs=176.9
Q ss_pred ccccCCCccccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCc-ccCCCCCCcEEEeeCC
Q 001889 514 TLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKTLCLSGC 591 (1000)
Q Consensus 514 ~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c 591 (1000)
+++.++ ..++.+|..+ .++|++|+|++|.|+.+|+ .+..|++|++|+|++|..++.+|. .+.++++|.++.+.++
T Consensus 13 ~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQE-SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEES-TTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecC-CCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 444444 3577888755 3689999999999999997 489999999999999987777775 4678999887666666
Q ss_pred CCCccc-CccccCcCCcceeecccccccCCCc-cccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCC-CCCCe
Q 001889 592 SELENV-PENMEKIESLEELDISGTAIRQPPS-SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGL-CSLTK 668 (1000)
Q Consensus 592 ~~l~~l-p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l-~~L~~ 668 (1000)
+.+..+ |..+..+++|++|++++|.+..+|. ......++..|++.++...... ....+..+ ..|+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l-----------~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI-----------ERNSFVGLSFESVI 158 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE-----------CTTSSTTSBSSCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc-----------cccchhhcchhhhh
Confidence 777777 5678999999999999999998864 4456678888998776532210 01234444 36889
Q ss_pred ecCCCCCCCCCCcccccCCCCcCcEEeCCC-CCCccccc-cccCCCCcCEEEEcCCcCCCccCC-CCCCccEEeeeCCCC
Q 001889 669 LDLSDCNIQEGAIPRDIGNLSSLEELYLSK-NSFVSLPA-TISLLFKLEELELEDCKRLQSLPQ-LPPNIVSVSVNDCAS 745 (1000)
Q Consensus 669 L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~-n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~-l~~~L~~L~~~~C~~ 745 (1000)
|+|++|++.. +|.......+|+.|++++ |.++.+|. .+..+++|+.|+|++| .++.+|. ...+|+.|.+.+|..
T Consensus 159 L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 159 LWLNKNGIQE--IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYN 235 (350)
T ss_dssp EECCSSCCCE--ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTT
T ss_pred hccccccccC--CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCC
Confidence 9999999975 887777788999999975 67889986 4689999999999997 5888874 568999999999999
Q ss_pred CcccCCcccc
Q 001889 746 LGKLSDTLKL 755 (1000)
Q Consensus 746 L~~l~~~~~~ 755 (1000)
++.+|....+
T Consensus 236 l~~lP~l~~l 245 (350)
T 4ay9_X 236 LKKLPTLEKL 245 (350)
T ss_dssp CCCCCCTTTC
T ss_pred cCcCCCchhC
Confidence 9999865443
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=4.1e-15 Score=176.83 Aligned_cols=181 Identities=24% Similarity=0.296 Sum_probs=149.3
Q ss_pred cccccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeC
Q 001889 511 ENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSG 590 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 590 (1000)
+.+.|+|+++. +..+|..+ .++|++|+|++|.|+.+| ..+++|++|+|++|. +..+|. +.+ +|++|+|++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence 45679999874 66688755 379999999999999999 568999999999986 666888 655 999999999
Q ss_pred CCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeec
Q 001889 591 CSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLD 670 (1000)
Q Consensus 591 c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~ 670 (1000)
| .+..+|. .+++|++|+|++|.++.+|. .+++|++|++++|.... ++. +. ++|+.|+
T Consensus 130 N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-------------lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 130 N-QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-------------LPE-LP--ESLEALD 186 (571)
T ss_dssp S-CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-------------CCC-CC--TTCCEEE
T ss_pred C-cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-------------cch-hh--CCCCEEE
Confidence 6 5666887 68999999999999999987 67899999999997432 223 44 7999999
Q ss_pred CCCCCCCCCCcccccCCCCcC-------cEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccC
Q 001889 671 LSDCNIQEGAIPRDIGNLSSL-------EELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLP 729 (1000)
Q Consensus 671 Ls~~~l~~~~ip~~l~~l~~L-------~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 729 (1000)
|++|++.. +|. +.. +| +.|+|++|.++.+|..+..+++|+.|+|++|+.-..+|
T Consensus 187 Ls~N~L~~--lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 187 VSTNLLES--LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCSSCCSS--CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred CcCCCCCc--hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 99999974 887 554 77 99999999999999999899999999999997655444
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=6.9e-17 Score=180.93 Aligned_cols=227 Identities=16% Similarity=0.163 Sum_probs=169.4
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeeccCCcccc--cCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEee
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITE--VPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLS 589 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~--lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 589 (1000)
.+.|+++++..-...+. +..+++|++|+|+++.+.. +|..+..+++|++|+|++|......|..+..+++|++|+++
T Consensus 72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 34677777653333444 4569999999999998873 78788999999999999997555778888899999999999
Q ss_pred CCCCCc--ccCccccCcCCcceeecccc-cccC--CCccccCCC-CCcEEEccCCCC-CCCCCCCccccCcccccCCCCC
Q 001889 590 GCSELE--NVPENMEKIESLEELDISGT-AIRQ--PPSSIFLMK-NLKELSFRGCKG-PPSSTSCSWRFPFNLMLPSLSG 662 (1000)
Q Consensus 590 ~c~~l~--~lp~~l~~l~~L~~L~L~~~-~i~~--lp~~i~~L~-~L~~L~L~~c~~-~~~~~~~~~~~p~~~~~~~l~~ 662 (1000)
+|..++ .++..+..+++|++|++++| .+.. ++..+..++ +|++|++++|.. ... ..++..+..
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~----------~~l~~~~~~ 220 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK----------SDLSTLVRR 220 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH----------HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH----------HHHHHHHhh
Confidence 996666 47777889999999999999 8875 467788899 999999999851 110 122344567
Q ss_pred CCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCC-Cc-cccccccCCCCcCEEEEcCCcCCCccCCCCCCccEEee
Q 001889 663 LCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNS-FV-SLPATISLLFKLEELELEDCKRLQSLPQLPPNIVSVSV 740 (1000)
Q Consensus 663 l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~-l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~~~L~~L~~ 740 (1000)
+++|+.|++++|....+..+..+..+++|+.|+|++|. +. .....+.++++|+.|+|++|-.-..+..+..++..|++
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l 300 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 300 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEE
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEE
Confidence 89999999999984344567788999999999999995 32 11125788999999999999111122333345677777
Q ss_pred eCCCCCcccC
Q 001889 741 NDCASLGKLS 750 (1000)
Q Consensus 741 ~~C~~L~~l~ 750 (1000)
++ ..++...
T Consensus 301 ~~-n~l~~~~ 309 (336)
T 2ast_B 301 NC-SHFTTIA 309 (336)
T ss_dssp SC-CCSCCTT
T ss_pred ec-ccCcccc
Confidence 54 4454433
No 95
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.61 E-value=1.9e-15 Score=181.17 Aligned_cols=188 Identities=20% Similarity=0.207 Sum_probs=122.6
Q ss_pred cccccchhhcCCCCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCcc
Q 001889 522 KLMKFPEILRSMEDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPEN 600 (1000)
Q Consensus 522 ~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 600 (1000)
.+..+|..+. ++|++|+|++|.++.+ |..+..+++|++|+|++|......|..+.++++|++|+|++|......|..
T Consensus 16 ~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 16 SFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred ccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence 4556666443 5777777777777765 345777777777777777644444456777777777777775433333334
Q ss_pred ccCcCCcceeecccccccCC--CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCC
Q 001889 601 MEKIESLEELDISGTAIRQP--PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQE 678 (1000)
Q Consensus 601 l~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~ 678 (1000)
++++++|++|++++|.+..+ |..++.+++|++|++++|..... . .+..+.++++|++|++++|.+.
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~----~~~~~~~l~~L~~L~L~~n~l~- 161 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE-------I----RRIDFAGLTSLNELEIKALSLR- 161 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-------E----CTTTTTTCCEEEEEEEEETTCC-
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc-------c----CHhhhhcccccCeeeccCCccc-
Confidence 77777777777777777643 55677777777777777652211 0 0134666777777777777763
Q ss_pred CCcccccCCCCcCcEEeCCCCCCccccccc-cCCCCcCEEEEcCCc
Q 001889 679 GAIPRDIGNLSSLEELYLSKNSFVSLPATI-SLLFKLEELELEDCK 723 (1000)
Q Consensus 679 ~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~c~ 723 (1000)
+..|..++.+++|+.|++++|.+..+|..+ ..+++|+.|+|++|.
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 345667777777777777777766666543 456777777777764
No 96
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=180.22 Aligned_cols=127 Identities=21% Similarity=0.208 Sum_probs=75.1
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeC
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSG 590 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 590 (1000)
.+.|+++++.--...+..+.++++|++|+|++|.+..+++ .++.+++|++|+|++|......|..+.++++|++|++++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence 3456666654322333455666666666666666665543 366666666666666653333335566666666666666
Q ss_pred CCCCcccCc-cccCcCCcceeecccccccC--CCccccCCCCCcEEEccCCC
Q 001889 591 CSELENVPE-NMEKIESLEELDISGTAIRQ--PPSSIFLMKNLKELSFRGCK 639 (1000)
Q Consensus 591 c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~c~ 639 (1000)
| .+..+|. .++++++|++|++++|.+.. +|..++.+++|++|++++|.
T Consensus 110 n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 110 T-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp S-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred c-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 4 3444443 46666666666666666654 36666666666666666664
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=2e-15 Score=177.77 Aligned_cols=195 Identities=21% Similarity=0.205 Sum_probs=156.1
Q ss_pred CCCCCCeeeccCCcccccC-CccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCccee
Q 001889 532 SMEDLSELFLDGTSITEVP-SSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEEL 610 (1000)
Q Consensus 532 ~l~~L~~L~L~~~~i~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 610 (1000)
.+++|+.|+|++|.+..++ ..++.+++|++|+|++|.. ..+++ +..+++|++|+|++| .+..+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC-EEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC-CCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence 3458999999999999876 5799999999999999874 44443 889999999999996 4555553 3899999
Q ss_pred ecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccC-CCC
Q 001889 611 DISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIG-NLS 689 (1000)
Q Consensus 611 ~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~-~l~ 689 (1000)
++++|.+..++.. .+++|+.|++++|..... .+..++.+++|+.|+|++|.+.. ..|..+. .++
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~l~ 169 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITML------------RDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSD 169 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSG------------GGBCGGGGSSEEEEECTTSCCCE-EEGGGGGGGTT
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCC------------CchhhcCCCCCCEEECCCCCCCC-cChHHHhhhCC
Confidence 9999999988653 468999999999974321 12467788999999999999854 4566665 799
Q ss_pred cCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCC---CCCCccEEeeeCCCCCcccCC
Q 001889 690 SLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQ---LPPNIVSVSVNDCASLGKLSD 751 (1000)
Q Consensus 690 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~~~L~~L~~~~C~~L~~l~~ 751 (1000)
+|+.|+|++|.++.+|. ...+++|+.|+|++|. +..+|. -.++|+.|++++|. +..+|.
T Consensus 170 ~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~ 231 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEK 231 (487)
T ss_dssp TCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECT
T ss_pred cccEEecCCCccccccc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-Ccccch
Confidence 99999999999999875 4469999999999986 555543 23789999999975 445554
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=3.9e-15 Score=179.00 Aligned_cols=170 Identities=25% Similarity=0.388 Sum_probs=125.4
Q ss_pred cCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCccee
Q 001889 531 RSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEEL 610 (1000)
Q Consensus 531 ~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 610 (1000)
..+++|+.|+++++.+..+| .+..|++|+.|+|++|. +..+|. +..+++|+.|+|++| .+..+| .+..+++|++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 34777888888888887776 47788888888888775 455554 677888888888875 455555 57778888888
Q ss_pred ecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCc
Q 001889 611 DISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSS 690 (1000)
Q Consensus 611 ~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~ 690 (1000)
+|++|.+..++ .+..+++|+.|+|++|.... + +.+..+++|+.|+|++|.+.. ++. +..+++
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-------------l-~~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~ 176 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNNKITD-------------I-TVLSRLTKLDTLSLEDNQISD--IVP-LAGLTK 176 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-------------C-GGGGSCTTCSEEECCSSCCCC--CGG-GTTCTT
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCCccCC-------------c-hhhcccCCCCEEECcCCcCCC--chh-hccCCC
Confidence 88888877763 47778888888888876322 1 456677888888888887754 333 778888
Q ss_pred CcEEeCCCCCCccccccccCCCCcCEEEEcCCcC
Q 001889 691 LEELYLSKNSFVSLPATISLLFKLEELELEDCKR 724 (1000)
Q Consensus 691 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 724 (1000)
|+.|+|++|.+..+| .+..|++|+.|+|++|+.
T Consensus 177 L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 177 LQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred CCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 888888888888775 577888888888887753
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=2.2e-14 Score=153.49 Aligned_cols=175 Identities=22% Similarity=0.246 Sum_probs=143.1
Q ss_pred ccccccCCCccccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeC
Q 001889 512 NTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSG 590 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 590 (1000)
.+.++++++ .+..+|..+. ++|+.|+|+++.+..++. .+..+++|++|+|++|......|..+..+++|++|+|++
T Consensus 16 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 346777775 5778887654 689999999999997765 589999999999999875555556688999999999999
Q ss_pred CCCCcccCccccCcCCcceeecccccccCCCcc-ccCCCCCcEEEccCCCCCCCCCCCccccCccccc-CCCCCCCCCCe
Q 001889 591 CSELENVPENMEKIESLEELDISGTAIRQPPSS-IFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLML-PSLSGLCSLTK 668 (1000)
Q Consensus 591 c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~-~~l~~l~~L~~ 668 (1000)
|......+..+..+++|++|+|++|.+..+|.. +..+++|++|++++|.... ++ ..+..+++|+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-------------IPAGAFDKLTNLQT 159 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------CCTTTTTTCTTCCE
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-------------cCHHHcCcCcCCCE
Confidence 754443446678999999999999999999765 5789999999999997432 22 35788999999
Q ss_pred ecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCcc
Q 001889 669 LDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVS 703 (1000)
Q Consensus 669 L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~ 703 (1000)
|+|++|.+.. ..+..+..+++|+.|+|++|.+..
T Consensus 160 L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 160 LSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp EECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred EECCCCcCCc-cCHHHHhCCCCCCEEEeeCCceeC
Confidence 9999999864 344578899999999999998864
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=6e-15 Score=161.61 Aligned_cols=186 Identities=20% Similarity=0.258 Sum_probs=152.7
Q ss_pred CCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecc
Q 001889 534 EDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDIS 613 (1000)
Q Consensus 534 ~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 613 (1000)
.++..+.+..+.+..+.. +..+++|+.|++++|. +..+|. +..+++|++|++++| .+..++. +..+++|++|+++
T Consensus 24 ~~~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHHTTCSCTTSEEC-HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred HHHHHHHhcCCCcccccc-hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECC
Confidence 345555666666665433 5678999999999986 677764 789999999999996 4566666 8999999999999
Q ss_pred cccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcE
Q 001889 614 GTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEE 693 (1000)
Q Consensus 614 ~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~ 693 (1000)
+|.+..+|. +..+++|++|++++|..... +.+..+++|+.|++++|.+.. + ..+..+++|+.
T Consensus 99 ~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~--------------~~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~ 160 (291)
T 1h6t_A 99 ENKVKDLSS-LKDLKKLKSLSLEHNGISDI--------------NGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDT 160 (291)
T ss_dssp SSCCCCGGG-GTTCTTCCEEECTTSCCCCC--------------GGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSE
T ss_pred CCcCCCChh-hccCCCCCEEECCCCcCCCC--------------hhhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCE
Confidence 999988764 89999999999999974321 457788999999999999875 4 57889999999
Q ss_pred EeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCC--CCCccEEeeeCCC
Q 001889 694 LYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQL--PPNIVSVSVNDCA 744 (1000)
Q Consensus 694 L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--~~~L~~L~~~~C~ 744 (1000)
|+|++|.++.++. +..+++|+.|+|++| .++.+|.+ .++|+.|++++++
T Consensus 161 L~L~~N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 161 LSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred EEccCCccccchh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 9999999999886 999999999999998 45666643 3689999998874
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=5.1e-15 Score=159.61 Aligned_cols=166 Identities=23% Similarity=0.276 Sum_probs=134.9
Q ss_pred CCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeec
Q 001889 533 MEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDI 612 (1000)
Q Consensus 533 l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 612 (1000)
+.++..++++++.++.++ .+..+++|+.|++++|. +..+| .+..+++|++|+|++| .+..+|. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 566778888888888887 57888999999999875 67777 6778899999999885 5666666 888899999999
Q ss_pred ccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCc
Q 001889 613 SGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLE 692 (1000)
Q Consensus 613 ~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~ 692 (1000)
++|.+..+|.... ++|+.|++++|.... + +.+..+++|+.|++++|++.. ++ .+..+++|+
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~-------------~-~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~ 153 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELRD-------------T-DSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLE 153 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCSB-------------S-GGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCC
T ss_pred CCCccCCcCcccc--CcccEEEccCCccCC-------------C-hhhcCcccccEEECCCCcCCC--Ch-HHccCCCCC
Confidence 9999888865444 889999998887432 1 357788899999999998865 54 688899999
Q ss_pred EEeCCCCCCccccccccCCCCcCEEEEcCCc
Q 001889 693 ELYLSKNSFVSLPATISLLFKLEELELEDCK 723 (1000)
Q Consensus 693 ~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 723 (1000)
.|+|++|.++.+ ..+..+++|+.|+|++|+
T Consensus 154 ~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 154 VLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred EEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 999999999888 578889999999998875
No 102
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.56 E-value=3.7e-14 Score=159.48 Aligned_cols=278 Identities=13% Similarity=0.114 Sum_probs=167.3
Q ss_pred CcccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHh--------
Q 001889 182 PVKSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKN-------- 253 (1000)
Q Consensus 182 ~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-------- 253 (1000)
+.++..+..|+||+.+++.|..++..+ +++.|+|++|+|||||+++++++.. .+|+......
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~-----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY-----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITR 74 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC-----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCH
Confidence 345556788999999999999888531 6899999999999999999998752 5565432211
Q ss_pred ---HH---hhhcc----------------CC----ccchhhhHHHHHHHhcC-CCcEEEecCCCCHH---------HHHH
Q 001889 254 ---LK---KKLAD----------------NS----IWNVDDGINILASRLQH-KKVLLVIDDVVDIK---------QLEY 297 (1000)
Q Consensus 254 ---~~---~~~~~----------------~~----~~~~~~~~~~i~~~L~~-k~~LlVLDdv~~~~---------~l~~ 297 (1000)
.. ..... .. ..+..+....+.+.... ++++|||||++... .+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 00 00000 00 11233334444444432 49999999997643 2333
Q ss_pred HhcCcCCCCCCceEEEEeCCcchhcc-----------cC-CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHH
Q 001889 298 LAGKREWFGSGSKIIITSRDEHLLKT-----------HG-MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERV 365 (1000)
Q Consensus 298 l~~~~~~~~~gsrIIiTTR~~~v~~~-----------~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i 365 (1000)
+...... .++.++|+|++...+... .+ ....+++.+|+.+|+.+++...+....... ..+.+.++
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i 231 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEA 231 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHH
Confidence 3222111 257789999987543111 11 124789999999999999976542222111 12467899
Q ss_pred HHHhCCCchHHHHHhhhhcC-CCHHHHHHHHHHhhcCCCcchhhHHHhhhcCC---ChhhHHHhhhhhcccCCcCHHHHH
Q 001889 366 LQYAGGLPVALEVLGSFLNG-RSLDQWKSTLERLQIDPPNQIMSVLEISFNGL---QHSEKKIFLDVACFFNLEDRDYVT 441 (1000)
Q Consensus 366 v~~~~GlPLAl~~lg~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L---~~~~k~~fl~la~f~~~~~~~~~~ 441 (1000)
++.++|+|+++..++..+.. .+...+.. .+.. .+...+.-.+..+ ++..+.++..+|+ .......+.
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~ 302 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAMK---RTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIR 302 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHHH---HHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHHH---HHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHH
Confidence 99999999999998876432 23222211 1110 1111121122223 6788999998987 233444554
Q ss_pred HHHhcC--CCCc---chhhHHhhcccceEEecCCchh-hhHHHHHHH
Q 001889 442 KVLDGC--DFSP---VIGIEVLINKSLITILNDNTLW-MHDLLQELG 482 (1000)
Q Consensus 442 ~~~~~~--~~~~---~~~l~~L~~~sLi~~~~~~~~~-mHdlv~~~~ 482 (1000)
..+... +... ...++.|.+.+||... ++.|. .|++++++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 303 DYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHH
Confidence 443211 2322 3558999999999876 45554 577887764
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=4e-16 Score=178.42 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=29.7
Q ss_pred CCCCCCCCCeecCCCCCCCC---CCcccccCCCCcCcEEeCCCCCCcc-----cccccc--CCCCcCEEEEcCCc
Q 001889 659 SLSGLCSLTKLDLSDCNIQE---GAIPRDIGNLSSLEELYLSKNSFVS-----LPATIS--LLFKLEELELEDCK 723 (1000)
Q Consensus 659 ~l~~l~~L~~L~Ls~~~l~~---~~ip~~l~~l~~L~~L~Ls~n~l~~-----lp~~i~--~l~~L~~L~L~~c~ 723 (1000)
.+..+++|+.|+|++|.+.. ..+|..+..+++|+.|+|++|.++. +|..+. .+++|+.|+|++|.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 34444555555555554421 1234444445555555555555442 233332 24555555555543
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=5.4e-15 Score=177.75 Aligned_cols=187 Identities=21% Similarity=0.256 Sum_probs=156.1
Q ss_pred CCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeec
Q 001889 533 MEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDI 612 (1000)
Q Consensus 533 l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 612 (1000)
+.++..+.+..+.+..+.. +..|++|+.|++++|. +..+| .+..|++|+.|+|++|. +..+|. +..+++|+.|+|
T Consensus 20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEEC
T ss_pred HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEEC
Confidence 4456667777777776654 6789999999999876 67777 58899999999999964 556665 899999999999
Q ss_pred ccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCc
Q 001889 613 SGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLE 692 (1000)
Q Consensus 613 ~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~ 692 (1000)
++|.+..+| .+..+++|+.|+|++|..... +.+..+++|+.|+|++|.+.. + ..+..+++|+
T Consensus 95 s~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--------------~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~ 156 (605)
T 1m9s_A 95 DENKIKDLS-SLKDLKKLKSLSLEHNGISDI--------------NGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLD 156 (605)
T ss_dssp CSSCCCCCT-TSTTCTTCCEEECTTSCCCCC--------------GGGGGCTTCSEEECCSSCCCC--C-GGGGSCTTCS
T ss_pred cCCCCCCCh-hhccCCCCCEEEecCCCCCCC--------------ccccCCCccCEEECCCCccCC--c-hhhcccCCCC
Confidence 999999876 689999999999999974321 457789999999999999975 4 6788999999
Q ss_pred EEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCC--CCCccEEeeeCCC
Q 001889 693 ELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQL--PPNIVSVSVNDCA 744 (1000)
Q Consensus 693 ~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--~~~L~~L~~~~C~ 744 (1000)
.|+|++|.+..++. +..+++|+.|+|++|. +..+|.+ .++|+.|++.+|+
T Consensus 157 ~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 157 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred EEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 99999999998876 9999999999999984 5566643 3789999999875
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=5.3e-14 Score=167.29 Aligned_cols=177 Identities=21% Similarity=0.319 Sum_probs=145.7
Q ss_pred CCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecc
Q 001889 534 EDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDIS 613 (1000)
Q Consensus 534 ~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 613 (1000)
.+|+.|+|+++.++.+|..+ +++|++|+|++|. +..+| ..+++|++|+|++| .+..+|. +.+ +|++|+|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 48999999999999999877 4899999999986 66888 46899999999996 5666888 665 99999999
Q ss_pred cccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcE
Q 001889 614 GTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEE 693 (1000)
Q Consensus 614 ~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~ 693 (1000)
+|.++.+|. .+++|+.|++++|.... ++. .+++|+.|+|++|.+.. +|. +. ++|+.
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~-------------lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~ 184 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTM-------------LPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEA 184 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSC-------------CCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCE
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCc-------------CCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCE
Confidence 999999987 68999999999997432 122 56899999999999976 887 65 99999
Q ss_pred EeCCCCCCccccccccCCCCc-------CEEEEcCCcCCCccCCC---CCCccEEeeeCCCCCcc
Q 001889 694 LYLSKNSFVSLPATISLLFKL-------EELELEDCKRLQSLPQL---PPNIVSVSVNDCASLGK 748 (1000)
Q Consensus 694 L~Ls~n~l~~lp~~i~~l~~L-------~~L~L~~c~~L~~lp~l---~~~L~~L~~~~C~~L~~ 748 (1000)
|+|++|.|+.+|. +.. +| +.|+|++|. ++.+|.- .++|+.|++++|+--+.
T Consensus 185 L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 185 LDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp EECCSSCCSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred EECcCCCCCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 9999999999998 554 77 999999974 6677742 37899999998874443
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.3e-14 Score=149.12 Aligned_cols=106 Identities=21% Similarity=0.281 Sum_probs=69.5
Q ss_pred cCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCccee
Q 001889 531 RSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEEL 610 (1000)
Q Consensus 531 ~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 610 (1000)
..+++|+.|+++++.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34667777777777777777 5777777777777777 344443 46677777777777755444456666777777777
Q ss_pred ecccccccC-CCccccCCCCCcEEEccCCC
Q 001889 611 DISGTAIRQ-PPSSIFLMKNLKELSFRGCK 639 (1000)
Q Consensus 611 ~L~~~~i~~-lp~~i~~L~~L~~L~L~~c~ 639 (1000)
++++|.+.. .|..+..+++|++|++++|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 777776664 34455556666666665554
No 107
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=5.8e-14 Score=158.32 Aligned_cols=278 Identities=15% Similarity=0.170 Sum_probs=164.3
Q ss_pred CcccccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhH---------
Q 001889 182 PVKSEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEK--------- 252 (1000)
Q Consensus 182 ~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~--------- 252 (1000)
|.+...+..|+||+.+++.|.. +.. +++.|+|++|+|||||++++++..... .+|+.....
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHH
Confidence 3455567889999999999999 753 599999999999999999999876532 455543211
Q ss_pred -hHHh---hh--------------ccC------Cc-cc------hhhhHHHHHHHhcC---CCcEEEecCCCCHH-----
Q 001889 253 -NLKK---KL--------------ADN------SI-WN------VDDGINILASRLQH---KKVLLVIDDVVDIK----- 293 (1000)
Q Consensus 253 -~~~~---~~--------------~~~------~~-~~------~~~~~~~i~~~L~~---k~~LlVLDdv~~~~----- 293 (1000)
.... .. ... .. .+ .......+.+.+.. ++++|||||++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 0000 00 000 00 00 01122233333322 48999999996632
Q ss_pred H-HHHHhcCcCCCCCCceEEEEeCCcchhcc-----------cCC-CceEecCCCChHHHHHHHHHhhcccCCCChhHHH
Q 001889 294 Q-LEYLAGKREWFGSGSKIIITSRDEHLLKT-----------HGM-DEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQ 360 (1000)
Q Consensus 294 ~-l~~l~~~~~~~~~gsrIIiTTR~~~v~~~-----------~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 360 (1000)
+ +..+...... .++.++|+|+|....... .+. ...+++.+|+.+|+.+++...+.......+.
T Consensus 156 ~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~--- 231 (357)
T 2fna_A 156 NLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD--- 231 (357)
T ss_dssp CCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---
T ss_pred hHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---
Confidence 1 2222111111 246789999997643211 111 2578999999999999998754221222222
Q ss_pred HHHHHHHHhCCCchHHHHHhhhhcC-CCHHHHHHH-HHHhhcCCCcchhhHHH-hhh--cCCChhhHHHhhhhhcccCCc
Q 001889 361 LSERVLQYAGGLPVALEVLGSFLNG-RSLDQWKST-LERLQIDPPNQIMSVLE-ISF--NGLQHSEKKIFLDVACFFNLE 435 (1000)
Q Consensus 361 l~~~iv~~~~GlPLAl~~lg~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~L~-~Sy--~~L~~~~k~~fl~la~f~~~~ 435 (1000)
..++++.++|+|+++..++..+.. .+...|... .+... ..+...+. ..+ ..|++..+.++..+|+ . .
T Consensus 232 -~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~- 303 (357)
T 2fna_A 232 -YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G- 303 (357)
T ss_dssp -HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-
T ss_pred -HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-
Confidence 178999999999999999877642 333333221 11110 01111121 111 1678889999999998 3 2
Q ss_pred CHHHHHHHHh-cCC--CC---cchhhHHhhcccceEEecCCchh-hhHHHHHHH
Q 001889 436 DRDYVTKVLD-GCD--FS---PVIGIEVLINKSLITILNDNTLW-MHDLLQELG 482 (1000)
Q Consensus 436 ~~~~~~~~~~-~~~--~~---~~~~l~~L~~~sLi~~~~~~~~~-mHdlv~~~~ 482 (1000)
+...+...+. ..+ .. ....++.|.+.+||...+ +.|. .|++++++.
T Consensus 304 ~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 4444443321 112 22 245689999999998763 5555 678888753
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1.5e-16 Score=190.15 Aligned_cols=180 Identities=19% Similarity=0.184 Sum_probs=134.3
Q ss_pred cCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCC-------------CCcccCcccCCCCCCcEEE-eeCCCCCcc
Q 001889 531 RSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCK-------------DLVRLPSRINGLKSLKTLC-LSGCSELEN 596 (1000)
Q Consensus 531 ~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~-------------~l~~lp~~i~~l~~L~~L~-Ls~c~~l~~ 596 (1000)
..+++|+.|+|++|.++.+|.+|+.|++|+.|++++|. ....+|..++.+++|+.|+ ++. +.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccch
Confidence 45788999999999999999999999999999987654 3445566677777888877 333 22222
Q ss_pred cCc------cccC--cCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCe
Q 001889 597 VPE------NMEK--IESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTK 668 (1000)
Q Consensus 597 lp~------~l~~--l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~ 668 (1000)
++. .+.. ...|+.|+|++|.++.+|. ++.+++|+.|+|++|... .+|..++.+++|+.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-------------ALPPALAALRCLEV 490 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-------------CCCGGGGGCTTCCE
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-------------ccchhhhcCCCCCE
Confidence 221 0111 1258888888888888886 888888888888888632 23466788888888
Q ss_pred ecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccc--cccccCCCCcCEEEEcCCcCCCccC
Q 001889 669 LDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSL--PATISLLFKLEELELEDCKRLQSLP 729 (1000)
Q Consensus 669 L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l--p~~i~~l~~L~~L~L~~c~~L~~lp 729 (1000)
|+|++|++.. +| .++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+ +..+|
T Consensus 491 L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 491 LQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp EECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred EECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 8888888865 77 788888888899988888877 7888888888888888875 44443
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=2.8e-14 Score=146.72 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=127.0
Q ss_pred cccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccccccC-CCccccCCCCCc
Q 001889 553 IELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQ-PPSSIFLMKNLK 631 (1000)
Q Consensus 553 i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~ 631 (1000)
...+++|+.|++++|. +..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .|..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 4778999999999976 66888 6889999999999998 555554 78899999999999999986 478899999999
Q ss_pred EEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCC-CCCCCcccccCCCCcCcEEeCCCCCCccccccccC
Q 001889 632 ELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCN-IQEGAIPRDIGNLSSLEELYLSKNSFVSLPATISL 710 (1000)
Q Consensus 632 ~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~-l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~ 710 (1000)
+|++++|.... ..+..+..+++|++|++++|. +.+ +| .+..+++|+.|++++|.++.++ .+..
T Consensus 116 ~L~Ls~n~i~~------------~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~ 179 (197)
T 4ezg_A 116 LLDISHSAHDD------------SILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDGVHDYR-GIED 179 (197)
T ss_dssp EEECCSSBCBG------------GGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBCCCCCT-TGGG
T ss_pred EEEecCCccCc------------HhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCCCcChH-Hhcc
Confidence 99999987422 123557788999999999998 654 55 6889999999999999999888 7889
Q ss_pred CCCcCEEEEcCCc
Q 001889 711 LFKLEELELEDCK 723 (1000)
Q Consensus 711 l~~L~~L~L~~c~ 723 (1000)
+++|+.|++++++
T Consensus 180 l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 180 FPKLNQLYAFSQT 192 (197)
T ss_dssp CSSCCEEEECBC-
T ss_pred CCCCCEEEeeCcc
Confidence 9999999999875
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=8.7e-16 Score=175.63 Aligned_cols=215 Identities=16% Similarity=0.188 Sum_probs=164.3
Q ss_pred cccccchhhcCCCCCCeeeccCCcccc-----cCCccccCCCCCEEeccCCCC--C-cccCccc-------CCCCCCcEE
Q 001889 522 KLMKFPEILRSMEDLSELFLDGTSITE-----VPSSIELLTGLQLLNLSDCKD--L-VRLPSRI-------NGLKSLKTL 586 (1000)
Q Consensus 522 ~l~~~p~~~~~l~~L~~L~L~~~~i~~-----lp~si~~L~~L~~L~L~~c~~--l-~~lp~~i-------~~l~~L~~L 586 (1000)
.+..++..+..+++|+.|+|++|.+.. ++..+..+++|++|+|++|.. + ..+|..+ ..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 455677778889999999999998874 445578899999999999742 1 2344443 689999999
Q ss_pred EeeCCCCCc----ccCccccCcCCcceeecccccccCC-----CccccCC---------CCCcEEEccCCCCCCCCCCCc
Q 001889 587 CLSGCSELE----NVPENMEKIESLEELDISGTAIRQP-----PSSIFLM---------KNLKELSFRGCKGPPSSTSCS 648 (1000)
Q Consensus 587 ~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~~l-----p~~i~~L---------~~L~~L~L~~c~~~~~~~~~~ 648 (1000)
+|++|.... .+|..+..+++|++|+|++|.+... +..+..+ ++|++|++++|......
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~---- 175 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS---- 175 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG----
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH----
Confidence 999976544 4788889999999999999988643 2334444 89999999999743110
Q ss_pred cccCcccccCCCCCCCCCCeecCCCCCCCCC----CcccccCCCCcCcEEeCCCCCC-----ccccccccCCCCcCEEEE
Q 001889 649 WRFPFNLMLPSLSGLCSLTKLDLSDCNIQEG----AIPRDIGNLSSLEELYLSKNSF-----VSLPATISLLFKLEELEL 719 (1000)
Q Consensus 649 ~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~----~ip~~l~~l~~L~~L~Ls~n~l-----~~lp~~i~~l~~L~~L~L 719 (1000)
...+...+..+++|+.|+|++|++... .+|..+..+++|+.|+|++|.+ ..+|..+..+++|+.|+|
T Consensus 176 ----~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 176 ----MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp ----HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred ----HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 111113456788999999999998632 2444788999999999999999 578889999999999999
Q ss_pred cCCcCCCc----cCC-----CCCCccEEeeeCCC
Q 001889 720 EDCKRLQS----LPQ-----LPPNIVSVSVNDCA 744 (1000)
Q Consensus 720 ~~c~~L~~----lp~-----l~~~L~~L~~~~C~ 744 (1000)
++|..-.. +|. -.++|+.|++++|.
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 99974322 332 15889999999985
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=1.4e-13 Score=154.93 Aligned_cols=215 Identities=20% Similarity=0.212 Sum_probs=162.3
Q ss_pred ecccccccCCCccccccch-hhcCCCCCCeeeccCCccc-ccCC-ccccCCCCCEEeccCCCCCccc-CcccCCCCCCcE
Q 001889 510 IENTTLVLSGCSKLMKFPE-ILRSMEDLSELFLDGTSIT-EVPS-SIELLTGLQLLNLSDCKDLVRL-PSRINGLKSLKT 585 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~-~~~~l~~L~~L~L~~~~i~-~lp~-si~~L~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~ 585 (1000)
.+.+.|+|+++ .++.+|. .|.++++|++|+|++|.+. .+|. .+.++++|..+.+.++..+..+ |..+..+++|++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 45568999997 4777775 6788999999999999985 4664 4788999887655555557776 556789999999
Q ss_pred EEeeCCCCCcccCc-cccCcCCcceeeccc-ccccCCCc-cccCC-CCCcEEEccCCCCCCCCCCCccccCcccccCCCC
Q 001889 586 LCLSGCSELENVPE-NMEKIESLEELDISG-TAIRQPPS-SIFLM-KNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLS 661 (1000)
Q Consensus 586 L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~-~~i~~lp~-~i~~L-~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~ 661 (1000)
|++++|. +..+|. .+....++..|++.+ +.+..+|. .+..+ ..|+.|++++|... .+++...
T Consensus 109 L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-------------~i~~~~f 174 (350)
T 4ay9_X 109 LLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-------------EIHNSAF 174 (350)
T ss_dssp EEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-------------EECTTSS
T ss_pred ccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-------------CCChhhc
Confidence 9999964 555554 455666788888865 57777754 34444 57999999998732 2334455
Q ss_pred CCCCCCeecCCCCCCCCCCccc-ccCCCCcCcEEeCCCCCCccccccccCCCCcCEEEEcCCcCCCccCCCC--CCccEE
Q 001889 662 GLCSLTKLDLSDCNIQEGAIPR-DIGNLSSLEELYLSKNSFVSLPATISLLFKLEELELEDCKRLQSLPQLP--PNIVSV 738 (1000)
Q Consensus 662 ~l~~L~~L~Ls~~~l~~~~ip~-~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~--~~L~~L 738 (1000)
...+|+.|++++++... .+|. .+..+++|+.|+|++|.++.+|.. .+.+|+.|.+.+|..++.+|.+. ++|+.+
T Consensus 175 ~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l 251 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEA 251 (350)
T ss_dssp TTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred cccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhC
Confidence 56789999998755333 3664 578999999999999999999974 47889999999999999999654 677777
Q ss_pred eeeC
Q 001889 739 SVND 742 (1000)
Q Consensus 739 ~~~~ 742 (1000)
++.+
T Consensus 252 ~l~~ 255 (350)
T 4ay9_X 252 SLTY 255 (350)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 6643
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=7.3e-14 Score=150.51 Aligned_cols=167 Identities=22% Similarity=0.294 Sum_probs=139.4
Q ss_pred ccccCCCccccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCC
Q 001889 514 TLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSE 593 (1000)
Q Consensus 514 ~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~ 593 (1000)
.++++++ .+..++ .+..+++|+.|+++++.+..+| .+..+++|++|+|++|. +..+|. +..+++|++|++++| .
T Consensus 23 ~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N-~ 96 (263)
T 1xeu_A 23 KQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-R 96 (263)
T ss_dssp HHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS-C
T ss_pred HHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC-c
Confidence 4566664 355566 3566999999999999999998 68999999999999986 667776 889999999999996 5
Q ss_pred CcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCC
Q 001889 594 LENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSD 673 (1000)
Q Consensus 594 l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~ 673 (1000)
+..+|.... .+|++|++++|.+..++ .+..+++|+.|++++|.... + +.+..+++|+.|++++
T Consensus 97 l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-------------~-~~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 97 LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-------------I-VMLGFLSKLEVLDLHG 159 (263)
T ss_dssp CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-------------C-GGGGGCTTCCEEECTT
T ss_pred cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-------------C-hHHccCCCCCEEECCC
Confidence 666776444 89999999999999885 58899999999999997432 1 3577889999999999
Q ss_pred CCCCCCCcccccCCCCcCcEEeCCCCCCccccc
Q 001889 674 CNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA 706 (1000)
Q Consensus 674 ~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~ 706 (1000)
|.+.. + ..+..+++|+.|+|++|.+...|.
T Consensus 160 N~i~~--~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 160 NEITN--T-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp SCCCB--C-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CcCcc--h-HHhccCCCCCEEeCCCCcccCCcc
Confidence 99975 3 678899999999999999887764
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=2.2e-13 Score=141.18 Aligned_cols=169 Identities=22% Similarity=0.256 Sum_probs=76.9
Q ss_pred eeeccCCcccccCCccccCCCCCEEeccCCCCCcccCc-ccCCCCCCcEEEeeCCCCCcccCc-cccCcCCcceeecccc
Q 001889 538 ELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKTLCLSGCSELENVPE-NMEKIESLEELDISGT 615 (1000)
Q Consensus 538 ~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~ 615 (1000)
.++.+++.++.+|..+ .++|++|+|++|. +..+|. .+..+++|++|++++| .+..+|. .+..+++|++|++++|
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 4444445555555433 3355555555544 223332 2345555555555553 2333332 2345555555555555
Q ss_pred cccCCCcc-ccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEE
Q 001889 616 AIRQPPSS-IFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEEL 694 (1000)
Q Consensus 616 ~i~~lp~~-i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L 694 (1000)
.+..+|.. +..+++|++|++++|..... ....+..+++|+.|+|++|.+.. ..+..+..+++|+.|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSL------------PDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYI 153 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEE
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCccc------------CHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEE
Confidence 55555332 34455555555555442110 00123444555555555555432 112224455555555
Q ss_pred eCCCCCCccccccccCCCCcCEEEEcCCcCCCccC
Q 001889 695 YLSKNSFVSLPATISLLFKLEELELEDCKRLQSLP 729 (1000)
Q Consensus 695 ~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 729 (1000)
+|++|.+. ..+++|+.|+++.+..-..+|
T Consensus 154 ~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 154 WLHDNPWD------CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp ECCSCCBC------CCTTTTHHHHHHHHHCTTTBB
T ss_pred EecCCCee------cCCCCHHHHHHHHHhCCceee
Confidence 55555432 233445555554444433444
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=1.3e-15 Score=182.03 Aligned_cols=191 Identities=18% Similarity=0.181 Sum_probs=150.8
Q ss_pred cccccccCCCccccccchhhcCCCCCCeeeccCCc--------------ccccCCccccCCCCCEEe-ccCCCCCcccCc
Q 001889 511 ENTTLVLSGCSKLMKFPEILRSMEDLSELFLDGTS--------------ITEVPSSIELLTGLQLLN-LSDCKDLVRLPS 575 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~--------------i~~lp~si~~L~~L~~L~-L~~c~~l~~lp~ 575 (1000)
+.+.|+|+++ .+..+|..++++++|+.|+++++. ....|..++.|++|+.|+ ++.+. +..++.
T Consensus 350 ~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~L~~ 427 (567)
T 1dce_A 350 QLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDDLRS 427 (567)
T ss_dssp TSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHH
T ss_pred cceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cchhhh
Confidence 3447888876 467899999999999999997753 234566788889999998 44432 222221
Q ss_pred ------ccCC--CCCCcEEEeeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCC
Q 001889 576 ------RING--LKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSC 647 (1000)
Q Consensus 576 ------~i~~--l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~ 647 (1000)
.+.. ...|++|+|++| .+..+|. ++.+++|+.|+|++|.+..+|..++.+++|+.|+|++|...
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~------ 499 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE------ 499 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC------
T ss_pred hhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC------
Confidence 0111 135999999996 6777887 99999999999999999999999999999999999999743
Q ss_pred ccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccccc----cCCCCcCEEEE
Q 001889 648 SWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPATI----SLLFKLEELEL 719 (1000)
Q Consensus 648 ~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i----~~l~~L~~L~L 719 (1000)
.+ +.++.+++|+.|+|++|++.....|..++.+++|+.|+|++|.++.+|..+ ..+++|+.|++
T Consensus 500 -------~l-p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 -------NV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -------CC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -------CC-cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 22 378899999999999999965222899999999999999999999888654 34888888864
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=6.8e-13 Score=139.75 Aligned_cols=147 Identities=26% Similarity=0.336 Sum_probs=78.5
Q ss_pred CeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCc-cccCcCCcceeecccc
Q 001889 537 SELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPE-NMEKIESLEELDISGT 615 (1000)
Q Consensus 537 ~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~ 615 (1000)
+.++.+++.+..+|..+. ++|++|+|++|......|..+..+++|++|+|++|. +..+|. .+..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC
Confidence 345555555555554332 455555555544333233444444555555554432 233332 2344444444444444
Q ss_pred cccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEe
Q 001889 616 AIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELY 695 (1000)
Q Consensus 616 ~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~ 695 (1000)
.++.+|. ..+..+++|+.|+|++|++.. +|..+..+++|+.|+
T Consensus 99 ~l~~l~~-----------------------------------~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 99 QLTVLPS-----------------------------------AVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLA 141 (229)
T ss_dssp CCCCCCT-----------------------------------TTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEE
T ss_pred cCCccCh-----------------------------------hHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEE
Confidence 4444432 223455566666666666653 666667777777777
Q ss_pred CCCCCCccccc-cccCCCCcCEEEEcCCc
Q 001889 696 LSKNSFVSLPA-TISLLFKLEELELEDCK 723 (1000)
Q Consensus 696 Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 723 (1000)
|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 77777776664 45667777777777654
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=7.6e-13 Score=138.45 Aligned_cols=149 Identities=21% Similarity=0.305 Sum_probs=88.0
Q ss_pred CeeeccCCcccccCCccccCCCCCEEeccCCCCCcccC-cccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccc
Q 001889 537 SELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLP-SRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGT 615 (1000)
Q Consensus 537 ~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 615 (1000)
+.++++++.++.+|..+. ++|+.|+|++|. +..+| ..+..+++|++|+|++|......|..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567777778888877654 678888888765 44444 35677778888888776544444667777788888888888
Q ss_pred cccCCCcc-ccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEE
Q 001889 616 AIRQPPSS-IFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEEL 694 (1000)
Q Consensus 616 ~i~~lp~~-i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L 694 (1000)
.+..+|.. +..+++|+.|+|++|..... .+..+..+++|+.|+|++|++.. ..+..+..+++|+.|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCL------------RVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTM 157 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEe------------CHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEE
Confidence 77777554 34566666666665542211 01234444455555555554432 112234444444444
Q ss_pred eCCCCCC
Q 001889 695 YLSKNSF 701 (1000)
Q Consensus 695 ~Ls~n~l 701 (1000)
+|++|.+
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 4444443
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=1e-14 Score=165.17 Aligned_cols=219 Identities=16% Similarity=0.103 Sum_probs=125.1
Q ss_pred ccCCCccccccchhhcCCCCCCeeeccCCcccccC-----CccccCC-CCCEEeccCCCCCcccCcccCCC-----CCCc
Q 001889 516 VLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVP-----SSIELLT-GLQLLNLSDCKDLVRLPSRINGL-----KSLK 584 (1000)
Q Consensus 516 ~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp-----~si~~L~-~L~~L~L~~c~~l~~lp~~i~~l-----~~L~ 584 (1000)
.++.+.....+|.++...++|++|+|++|.+...+ ..+..++ +|++|+|++|......+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 44554444456666665566777777777777655 3456666 77777777775333334344443 7777
Q ss_pred EEEeeCCCCCcccCcc----ccCc-CCcceeecccccccCCCc-c----ccC-CCCCcEEEccCCCCCCCCCCCccccCc
Q 001889 585 TLCLSGCSELENVPEN----MEKI-ESLEELDISGTAIRQPPS-S----IFL-MKNLKELSFRGCKGPPSSTSCSWRFPF 653 (1000)
Q Consensus 585 ~L~Ls~c~~l~~lp~~----l~~l-~~L~~L~L~~~~i~~lp~-~----i~~-L~~L~~L~L~~c~~~~~~~~~~~~~p~ 653 (1000)
+|+|++|......+.. +..+ ++|++|++++|.+...+. . +.. .++|++|++++|...... .
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--------~ 155 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS--------S 155 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC--------H
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH--------H
Confidence 7777776532222332 3333 677777777777766643 2 223 257777777777532110 0
Q ss_pred ccccCCCCCCC-CCCeecCCCCCCCCCCccc----ccCCC-CcCcEEeCCCCCCcc-----ccccccC-CCCcCEEEEcC
Q 001889 654 NLMLPSLSGLC-SLTKLDLSDCNIQEGAIPR----DIGNL-SSLEELYLSKNSFVS-----LPATISL-LFKLEELELED 721 (1000)
Q Consensus 654 ~~~~~~l~~l~-~L~~L~Ls~~~l~~~~ip~----~l~~l-~~L~~L~Ls~n~l~~-----lp~~i~~-l~~L~~L~L~~ 721 (1000)
..+...+..++ +|++|+|++|++... .+. .+..+ ++|+.|+|++|.+.. ++..+.. .++|+.|+|++
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASK-NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHHhcCCccccEeeecCCCCchh-hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 11112233343 777777777776431 222 23334 477777777777765 5655555 34777777777
Q ss_pred CcCCCccC--------CCCCCccEEeeeCCC
Q 001889 722 CKRLQSLP--------QLPPNIVSVSVNDCA 744 (1000)
Q Consensus 722 c~~L~~lp--------~l~~~L~~L~~~~C~ 744 (1000)
|. +...+ ...++|+.|++++|.
T Consensus 235 N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 235 NC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp SC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 64 33221 223567777777764
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=4.1e-13 Score=139.19 Aligned_cols=175 Identities=22% Similarity=0.225 Sum_probs=138.1
Q ss_pred ccccCCCccccccchhhcCCCCCCeeeccCCcccccCCc-cccCCCCCEEeccCCCCCcccCc-ccCCCCCCcEEEeeCC
Q 001889 514 TLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSS-IELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKTLCLSGC 591 (1000)
Q Consensus 514 ~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c 591 (1000)
.++++++ .+..+|..+ .++|++|+++++.+..++.. +..+++|++|+|++|. +..+|. .+..+++|++|++++|
T Consensus 11 ~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC
Confidence 3445443 455666544 46899999999999988775 6899999999999986 556655 4678999999999996
Q ss_pred CCCcccCc-cccCcCCcceeecccccccCCCcc-ccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCee
Q 001889 592 SELENVPE-NMEKIESLEELDISGTAIRQPPSS-IFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKL 669 (1000)
Q Consensus 592 ~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L 669 (1000)
. +..+|. .+..+++|++|++++|.+..+|.. +..+++|++|++++|..... ....+..+++|+.|
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~------------~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 87 Q-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV------------PDGVFDRLTSLQYI 153 (208)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTTCCEE
T ss_pred c-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee------------CHHHhccCCCccEE
Confidence 4 555554 478999999999999999998665 68899999999999874321 11347789999999
Q ss_pred cCCCCCCCCCCcccccCCCCcCcEEeCCCCCCc-cccccccCCCC
Q 001889 670 DLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFV-SLPATISLLFK 713 (1000)
Q Consensus 670 ~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~ 713 (1000)
++++|.+. +.+++|+.|+++.|.++ .+|.+++.++.
T Consensus 154 ~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 154 WLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ECCSCCBC--------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred EecCCCee--------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 99999763 35678999999999888 88988877665
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=4.4e-13 Score=151.55 Aligned_cols=168 Identities=25% Similarity=0.275 Sum_probs=97.5
Q ss_pred CeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcc-cC-CCCCCcEEEeeCCCCCcccC-ccccCcCCcceeecc
Q 001889 537 SELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSR-IN-GLKSLKTLCLSGCSELENVP-ENMEKIESLEELDIS 613 (1000)
Q Consensus 537 ~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~-i~-~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~ 613 (1000)
+.++++++.++.+|..+. ..|+.|+|++|. +..++.. +. ++++|++|+|++|. +..++ ..+.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECC
Confidence 466667777777766543 346677777665 4444433 33 66777777777643 34443 456677777777777
Q ss_pred cccccCCCc-cccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCccccc----CCC
Q 001889 614 GTAIRQPPS-SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDI----GNL 688 (1000)
Q Consensus 614 ~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l----~~l 688 (1000)
+|.+..++. .+..+++|+.|+|++|..... .+..+.++++|+.|+|++|.+.. +|..+ ..+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~------------~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l 162 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVV------------DRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKL 162 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEE------------CTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----C
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEE------------CHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccC
Confidence 777666643 455666666666666653210 12345566666666666666654 44433 456
Q ss_pred CcCcEEeCCCCCCccccc-cccCCCC--cCEEEEcCC
Q 001889 689 SSLEELYLSKNSFVSLPA-TISLLFK--LEELELEDC 722 (1000)
Q Consensus 689 ~~L~~L~Ls~n~l~~lp~-~i~~l~~--L~~L~L~~c 722 (1000)
++|+.|+|++|.++.+|. .+..++. |+.|+|++|
T Consensus 163 ~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 677777777777766663 3444444 255555554
No 120
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.44 E-value=4.9e-13 Score=162.92 Aligned_cols=186 Identities=25% Similarity=0.272 Sum_probs=145.3
Q ss_pred cccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCc-ccCCCCCCcEEEeeCCCCCcccCc
Q 001889 522 KLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKTLCLSGCSELENVPE 599 (1000)
Q Consensus 522 ~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~ 599 (1000)
++..+|..+. +++++|+|++|.|+.+|+ +|..+++|++|+|++|. +..+|. .+.+|++|++|+|++| .+..+|.
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~ 117 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLAL 117 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECG
T ss_pred CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCC-cCCCCCH
Confidence 5778887542 489999999999999875 68999999999999986 666654 6889999999999996 4677764
Q ss_pred -cccCcCCcceeecccccccCCCc-cccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCC
Q 001889 600 -NMEKIESLEELDISGTAIRQPPS-SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQ 677 (1000)
Q Consensus 600 -~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~ 677 (1000)
.+.++++|++|+|++|.++.+|. .++.+++|++|++++|..... ..+..+..+++|++|++++|++.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-----------~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------KLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------CCCGGGGGCTTCCEEECCSSCCC
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC-----------CCchhhccchhhhhhcccCcccc
Confidence 57999999999999999999865 588999999999999874321 12255678899999999999885
Q ss_pred CCCcccccCCCCcC----cEEeCCCCCCccccccccCCCCcCEEEEcCCc
Q 001889 678 EGAIPRDIGNLSSL----EELYLSKNSFVSLPATISLLFKLEELELEDCK 723 (1000)
Q Consensus 678 ~~~ip~~l~~l~~L----~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 723 (1000)
. ..|..+..+.++ ..++++.|.+..++........+..|.+.++.
T Consensus 187 ~-~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 187 S-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp E-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred c-cccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccc
Confidence 4 345555554443 46888889888888776666677777777653
No 121
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.41 E-value=6e-13 Score=153.34 Aligned_cols=275 Identities=15% Similarity=0.103 Sum_probs=157.0
Q ss_pred cccccccchhhHHHhhccc-CC---CCCCCcEEEEE--EecCCCChhHHHHHHHHHhhcc-----cc-eEEEEechh---
Q 001889 187 VLKKLVGIDSRLKELRSLI-DG---GPNDDVRMIGI--CGMGGLGKTTLARVVYDTISMN-----LK-GVVFLPMLE--- 251 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L-~~---~~~~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----f~-~~~~~~~~~--- 251 (1000)
.+..++||+.++++|...+ .. +.....+.+.| +|++|+||||||+++++..... +. .++|+....
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3478999999999998887 31 10012345666 9999999999999999877653 12 245554221
Q ss_pred --HhHHh---hhcc-C--CccchhhhHHHHHHHhc--CCCcEEEecCCCCH--------HHHHHHhcCcCCC---C--CC
Q 001889 252 --KNLKK---KLAD-N--SIWNVDDGINILASRLQ--HKKVLLVIDDVVDI--------KQLEYLAGKREWF---G--SG 308 (1000)
Q Consensus 252 --~~~~~---~~~~-~--~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~--------~~l~~l~~~~~~~---~--~g 308 (1000)
..... +... . ...+..+....+.+.+. +++++|||||++.. +.+..+....... + ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 11111 1111 0 11123344556666664 67999999999764 3344333222111 1 33
Q ss_pred ceEEEEeCCcchhcc---------cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhC------CCc
Q 001889 309 SKIIITSRDEHLLKT---------HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAG------GLP 373 (1000)
Q Consensus 309 srIIiTTR~~~v~~~---------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~------GlP 373 (1000)
..||+||++..+... ......+++++|+.+++.++|...+.....+..-..+.+..+++.++ |.|
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcH
Confidence 457888876543211 01122389999999999999976542111111111356788999999 999
Q ss_pred hHHHHHhhhh------cC---CCHHHHHHHHHHhhcCCCcchhhHHHhhhcCCChhhHHHhhhhhcccC----CcCHHHH
Q 001889 374 VALEVLGSFL------NG---RSLDQWKSTLERLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFN----LEDRDYV 440 (1000)
Q Consensus 374 LAl~~lg~~L------~~---~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~la~f~~----~~~~~~~ 440 (1000)
..+..++... .+ .+.+.+..++..... ...+.-++++|++.++.++..+|.+.. ......+
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~ 333 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLL 333 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 7655544321 11 234445444443220 233455678999999999998987642 1122222
Q ss_pred H----HHH-hcCCCCc------chhhHHhhcccceEEe
Q 001889 441 T----KVL-DGCDFSP------VIGIEVLINKSLITIL 467 (1000)
Q Consensus 441 ~----~~~-~~~~~~~------~~~l~~L~~~sLi~~~ 467 (1000)
. .+. ...+..+ ...++.|.+.+||...
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 334 RQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 1 222 2223221 3457889999999765
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=2.2e-12 Score=134.88 Aligned_cols=149 Identities=20% Similarity=0.262 Sum_probs=79.7
Q ss_pred CeeeccCCcccccCCccccCCCCCEEeccCCCCCccc-C-cccCCCCCCcEEEeeCCCCCcccC-ccccCcCCcceeecc
Q 001889 537 SELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRL-P-SRINGLKSLKTLCLSGCSELENVP-ENMEKIESLEELDIS 613 (1000)
Q Consensus 537 ~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~l-p-~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~ 613 (1000)
+.++++++.++.+|..+. ..+++|+|++|. +..+ | ..+..+++|++|+|++|. +..++ ..+..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECC
Confidence 466777777777776543 345677777655 3443 2 225566667777776643 33333 356666667777776
Q ss_pred cccccCCCc-cccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCc
Q 001889 614 GTAIRQPPS-SIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLE 692 (1000)
Q Consensus 614 ~~~i~~lp~-~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~ 692 (1000)
+|.+..++. .+..+++|++|+|++|..... .+..+..+++|+.|+|++|++.. ..|..+..+++|+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~ 156 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCV------------GNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLS 156 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCB------------CTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeE------------CHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCC
Confidence 666666643 245555555555555542110 01234444555555555554432 2244455555555
Q ss_pred EEeCCCCCCc
Q 001889 693 ELYLSKNSFV 702 (1000)
Q Consensus 693 ~L~Ls~n~l~ 702 (1000)
.|+|++|.+.
T Consensus 157 ~L~L~~N~l~ 166 (220)
T 2v70_A 157 TLNLLANPFN 166 (220)
T ss_dssp EEECCSCCEE
T ss_pred EEEecCcCCc
Confidence 5555555443
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=3.5e-12 Score=133.36 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=115.5
Q ss_pred CEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCccc-C-ccccCcCCcceeecccccccCCCc-cccCCCCCcEEEcc
Q 001889 560 QLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENV-P-ENMEKIESLEELDISGTAIRQPPS-SIFLMKNLKELSFR 636 (1000)
Q Consensus 560 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l-p-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~ 636 (1000)
+.++++++. +..+|..+ ...+++|+|++|. +..+ | ..+..+++|++|+|++|.++.++. .+..+++|++|+|+
T Consensus 14 ~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHI--PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCC-cccCccCC--CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 578888765 67788765 3457899999864 5555 3 347889999999999999988854 78889999999999
Q ss_pred CCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccc-cccccCCCCcC
Q 001889 637 GCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSL-PATISLLFKLE 715 (1000)
Q Consensus 637 ~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~ 715 (1000)
+|..... .+..+..+++|++|+|++|++.. ..|..+..+++|+.|+|++|.++.+ |..+..+++|+
T Consensus 90 ~N~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 90 SNRLENV------------QHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp SSCCCCC------------CGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred CCccCcc------------CHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 8874321 12347788899999999998854 4477888899999999999999877 66788888999
Q ss_pred EEEEcCCc
Q 001889 716 ELELEDCK 723 (1000)
Q Consensus 716 ~L~L~~c~ 723 (1000)
.|+|++|+
T Consensus 157 ~L~L~~N~ 164 (220)
T 2v70_A 157 TLNLLANP 164 (220)
T ss_dssp EEECCSCC
T ss_pred EEEecCcC
Confidence 99888875
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1.2e-12 Score=148.02 Aligned_cols=174 Identities=23% Similarity=0.244 Sum_probs=135.3
Q ss_pred cccccCCCccccccchhhcCCCCCCeeeccCCcccccCCc-cc-cCCCCCEEeccCCCCCcccC-cccCCCCCCcEEEee
Q 001889 513 TTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSS-IE-LLTGLQLLNLSDCKDLVRLP-SRINGLKSLKTLCLS 589 (1000)
Q Consensus 513 ~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~s-i~-~L~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls 589 (1000)
.+++++++ .+..+|..+. ++|+.|+|++|.|+.++.. +. .+++|++|+|++|. +..++ ..+.++++|++|+|+
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECC
Confidence 36777765 5777887553 5799999999999988776 44 89999999999987 55554 568999999999999
Q ss_pred CCCCCcccC-ccccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCC
Q 001889 590 GCSELENVP-ENMEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLT 667 (1000)
Q Consensus 590 ~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~ 667 (1000)
+|. +..++ ..+..+++|++|+|++|.+..+ |..+..+++|+.|+|++|..... |. .....+..+++|+
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l--------~~-~~~~~~~~l~~L~ 166 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF--------PV-ELIKDGNKLPKLM 166 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC--------CG-GGTC----CTTCC
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee--------CH-HHhcCcccCCcCC
Confidence 965 55555 4689999999999999999988 67889999999999999974321 10 0001125789999
Q ss_pred eecCCCCCCCCCCcc-cccCCCCc--CcEEeCCCCCCc
Q 001889 668 KLDLSDCNIQEGAIP-RDIGNLSS--LEELYLSKNSFV 702 (1000)
Q Consensus 668 ~L~Ls~~~l~~~~ip-~~l~~l~~--L~~L~Ls~n~l~ 702 (1000)
.|+|++|++.. +| ..+..++. |+.|+|++|.+.
T Consensus 167 ~L~L~~N~l~~--l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNKLKK--LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCCC--CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCCCCc--cCHHHhhhccHhhcceEEecCCCcc
Confidence 99999999865 55 45667776 488999999876
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.8e-12 Score=129.27 Aligned_cols=137 Identities=24% Similarity=0.318 Sum_probs=79.5
Q ss_pred CCCCCeeeccCCccc--ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCccee
Q 001889 533 MEDLSELFLDGTSIT--EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEEL 610 (1000)
Q Consensus 533 l~~L~~L~L~~~~i~--~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 610 (1000)
.++|+.|+++++.+. .+|..+..+++|++|+|++|. +..+ ..+..+++|++|++++|.....+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 456667777766666 666666666666666666655 4444 445566666666666654333355555556666666
Q ss_pred ecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCccc----ccC
Q 001889 611 DISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPR----DIG 686 (1000)
Q Consensus 611 ~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~----~l~ 686 (1000)
++++|.+..+|. +..+..+++|+.|++++|.+.. +|. .+.
T Consensus 101 ~Ls~N~l~~~~~----------------------------------~~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~~~ 144 (168)
T 2ell_A 101 NLSGNKLKDIST----------------------------------LEPLKKLECLKSLDLFNCEVTN--LNDYRESVFK 144 (168)
T ss_dssp ECBSSSCCSSGG----------------------------------GGGGSSCSCCCEEECCSSGGGT--STTHHHHHHT
T ss_pred eccCCccCcchh----------------------------------HHHHhcCCCCCEEEeeCCcCcc--hHHHHHHHHH
Confidence 666665555431 0233444555555555555543 343 566
Q ss_pred CCCcCcEEeCCCCCCcccccc
Q 001889 687 NLSSLEELYLSKNSFVSLPAT 707 (1000)
Q Consensus 687 ~l~~L~~L~Ls~n~l~~lp~~ 707 (1000)
.+++|+.|++++|.+..+|..
T Consensus 145 ~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 145 LLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp TCSSCCEETTEETTSCBCCSS
T ss_pred hCccCcEecCCCCChhhcccc
Confidence 677777777777776666643
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=5.7e-14 Score=159.02 Aligned_cols=225 Identities=17% Similarity=0.164 Sum_probs=156.2
Q ss_pred ecccccccCCCccccccc-----hhhcCCC-CCCeeeccCCccccc-CCccccC-----CCCCEEeccCCCCCcccCcc-
Q 001889 510 IENTTLVLSGCSKLMKFP-----EILRSME-DLSELFLDGTSITEV-PSSIELL-----TGLQLLNLSDCKDLVRLPSR- 576 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p-----~~~~~l~-~L~~L~L~~~~i~~l-p~si~~L-----~~L~~L~L~~c~~l~~lp~~- 576 (1000)
...+.|+|++|. +...+ ..+..++ +|++|+|++|.+... +..+..+ ++|++|+|++|......+..
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 346689999986 44443 6777888 999999999999865 4445554 99999999999843333332
Q ss_pred ---cCCC-CCCcEEEeeCCCCCcccC-cc----ccC-cCCcceeecccccccCC-----CccccCCC-CCcEEEccCCCC
Q 001889 577 ---INGL-KSLKTLCLSGCSELENVP-EN----MEK-IESLEELDISGTAIRQP-----PSSIFLMK-NLKELSFRGCKG 640 (1000)
Q Consensus 577 ---i~~l-~~L~~L~Ls~c~~l~~lp-~~----l~~-l~~L~~L~L~~~~i~~l-----p~~i~~L~-~L~~L~L~~c~~ 640 (1000)
+..+ ++|++|+|++|. ++..+ .. +.. .++|++|+|++|.+... +..+..++ +|++|++++|..
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 3344 899999999976 44433 22 334 36999999999998843 34455665 999999999974
Q ss_pred CCCCCCCccccCcccccCCCCCC-CCCCeecCCCCCCCCCC---cccccCC-CCcCcEEeCCCCCCcccc-----ccccC
Q 001889 641 PPSSTSCSWRFPFNLMLPSLSGL-CSLTKLDLSDCNIQEGA---IPRDIGN-LSSLEELYLSKNSFVSLP-----ATISL 710 (1000)
Q Consensus 641 ~~~~~~~~~~~p~~~~~~~l~~l-~~L~~L~Ls~~~l~~~~---ip~~l~~-l~~L~~L~Ls~n~l~~lp-----~~i~~ 710 (1000)
.... ...+...+..+ ++|+.|+|++|.+.+.. ++..+.. .++|+.|+|++|.+...+ ..+..
T Consensus 180 ~~~~--------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 180 ASKN--------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp GGSC--------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred chhh--------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 3211 01111234455 59999999999986422 4445555 459999999999988543 35688
Q ss_pred CCCcCEEEEcCCc--C-----CCccCCC---CCCccEEeeeCCC
Q 001889 711 LFKLEELELEDCK--R-----LQSLPQL---PPNIVSVSVNDCA 744 (1000)
Q Consensus 711 l~~L~~L~L~~c~--~-----L~~lp~l---~~~L~~L~~~~C~ 744 (1000)
+++|+.|+|++|. . +..++.. .++|+.|+++++.
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 8999999999986 1 2222222 2457777777764
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=2.1e-12 Score=128.90 Aligned_cols=134 Identities=25% Similarity=0.282 Sum_probs=84.3
Q ss_pred CCCCEEeccCCCCC-cccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccccccC-CCccccCCCCCcEEE
Q 001889 557 TGLQLLNLSDCKDL-VRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQ-PPSSIFLMKNLKELS 634 (1000)
Q Consensus 557 ~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~ 634 (1000)
++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.. +|..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----------- 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDML----------- 90 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-----------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHH-----------
Confidence 45555555555422 2455555555555555555543 3333 344445555555555554444 2222
Q ss_pred ccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc----cccC
Q 001889 635 FRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA----TISL 710 (1000)
Q Consensus 635 L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~----~i~~ 710 (1000)
+..+++|+.|++++|.+.....+..+..+++|+.|+|++|.++.+|. .+..
T Consensus 91 -------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 91 -------------------------AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL 145 (168)
T ss_dssp -------------------------HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT
T ss_pred -------------------------HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh
Confidence 23355666677777766542222688899999999999999999987 7899
Q ss_pred CCCcCEEEEcCCcCCCccC
Q 001889 711 LFKLEELELEDCKRLQSLP 729 (1000)
Q Consensus 711 l~~L~~L~L~~c~~L~~lp 729 (1000)
+++|+.|++++|. +..+|
T Consensus 146 l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 146 LPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp CSSCCEETTEETT-SCBCC
T ss_pred CccCcEecCCCCC-hhhcc
Confidence 9999999999986 34444
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=7.1e-12 Score=131.06 Aligned_cols=149 Identities=23% Similarity=0.305 Sum_probs=123.3
Q ss_pred cccccCCCccccccchhhcCCCCCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCC
Q 001889 513 TTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 513 ~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 591 (1000)
+.++++++ .+..+|..+. ++|+.|+|++|.|..+|. .+..+++|++|+|++|......|..+.++++|++|+|++|
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 35666664 5777887553 789999999999998876 6899999999999998855555888999999999999996
Q ss_pred CCCcccCcc-ccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCee
Q 001889 592 SELENVPEN-MEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKL 669 (1000)
Q Consensus 592 ~~l~~lp~~-l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L 669 (1000)
.+..+|.. +..+++|++|+|++|.+..+ |..+..+++|++|+|++|..... .+..+..+++|+.|
T Consensus 91 -~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 91 -KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI------------AKGTFSPLRAIQTM 157 (220)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC------------CTTTTTTCTTCCEE
T ss_pred -cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE------------CHHHHhCCCCCCEE
Confidence 56677755 68899999999999999998 56788999999999999974322 11357789999999
Q ss_pred cCCCCCCC
Q 001889 670 DLSDCNIQ 677 (1000)
Q Consensus 670 ~Ls~~~l~ 677 (1000)
+|++|.+.
T Consensus 158 ~L~~N~~~ 165 (220)
T 2v9t_B 158 HLAQNPFI 165 (220)
T ss_dssp ECCSSCEE
T ss_pred EeCCCCcC
Confidence 99999874
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.35 E-value=6.6e-14 Score=163.86 Aligned_cols=202 Identities=20% Similarity=0.207 Sum_probs=104.0
Q ss_pred CCCeeeccCCccc-----ccCCccccCCCCCEEeccCCCCCcccCc----c-cCCCCCCcEEEeeCCCCCc----ccCcc
Q 001889 535 DLSELFLDGTSIT-----EVPSSIELLTGLQLLNLSDCKDLVRLPS----R-INGLKSLKTLCLSGCSELE----NVPEN 600 (1000)
Q Consensus 535 ~L~~L~L~~~~i~-----~lp~si~~L~~L~~L~L~~c~~l~~lp~----~-i~~l~~L~~L~Ls~c~~l~----~lp~~ 600 (1000)
+|++|+|++|.+. .+|..+..+++|++|+|++|.....-+. . ...+++|++|++++|.... .++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 4666666666555 3455555666666666666542111111 1 1123456666666653222 23444
Q ss_pred ccCcCCcceeecccccccCC-Ccccc-----CCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCC
Q 001889 601 MEKIESLEELDISGTAIRQP-PSSIF-----LMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDC 674 (1000)
Q Consensus 601 l~~l~~L~~L~L~~~~i~~l-p~~i~-----~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~ 674 (1000)
+..+++|++|++++|.+... +..+. .+++|++|++++|...... ...++..+..+++|++|++++|
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~--------~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN--------CRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH--------HHHHHHHHHHCTTCCEEECCSS
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH--------HHHHHHHHHhCCCccEEeccCC
Confidence 45556666666666655432 11111 2446666666666422110 0112233445667777777777
Q ss_pred CCCCCCc----ccccCCCCcCcEEeCCCCCCcc-----ccccccCCCCcCEEEEcCCcCCC----c----cCCCCCCccE
Q 001889 675 NIQEGAI----PRDIGNLSSLEELYLSKNSFVS-----LPATISLLFKLEELELEDCKRLQ----S----LPQLPPNIVS 737 (1000)
Q Consensus 675 ~l~~~~i----p~~l~~l~~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~c~~L~----~----lp~l~~~L~~ 737 (1000)
.+.+..+ +.....+++|++|+|++|.++. +|..+..+++|+.|+|++|..-. . +...+++|+.
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 6543111 2222346677777777777664 56666667777777777764211 1 1222357777
Q ss_pred EeeeCCC
Q 001889 738 VSVNDCA 744 (1000)
Q Consensus 738 L~~~~C~ 744 (1000)
|++++|.
T Consensus 318 L~L~~n~ 324 (461)
T 1z7x_W 318 LWVKSCS 324 (461)
T ss_dssp EECTTSC
T ss_pred eEcCCCC
Confidence 7777764
No 130
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=2.3e-11 Score=138.64 Aligned_cols=266 Identities=13% Similarity=0.081 Sum_probs=163.7
Q ss_pred ccccccchhhHHHhhcccCCC-CCCCcEEEEEEecCCCChhHHHHHHHHHhhcc--------cceEEEEechhHh-----
Q 001889 188 LKKLVGIDSRLKELRSLIDGG-PNDDVRMIGICGMGGLGKTTLARVVYDTISMN--------LKGVVFLPMLEKN----- 253 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~----- 253 (1000)
+..++||+.+++++..++... .....+.+.|+|++|+||||||+++++.+... ....+++......
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 478999999999988776531 11345689999999999999999999877443 2234455422211
Q ss_pred -HHh---hhcc----CCccchhhhHHHHHHHhcCCCcEEEecCCCCHHH-------HHHHhcCcCCCCCCceEEEEeCCc
Q 001889 254 -LKK---KLAD----NSIWNVDDGINILASRLQHKKVLLVIDDVVDIKQ-------LEYLAGKREWFGSGSKIIITSRDE 318 (1000)
Q Consensus 254 -~~~---~~~~----~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~-------l~~l~~~~~~~~~gsrIIiTTR~~ 318 (1000)
... +... ............+.+.+..++.+|||||++.... +..+... . .+..||+||+..
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEECSST
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEECCC
Confidence 000 1100 1112234456677777777666999999977542 3333332 2 678899999875
Q ss_pred chhcc------cCCCceEecCCCChHHHHHHHHHhhc---ccCCCChhHHHHHHHHHHHhC---CCch-HHHHHhhhh--
Q 001889 319 HLLKT------HGMDEVYKPSSLNYDEAFQLFNMKAF---KSQQPSEECVQLSERVLQYAG---GLPV-ALEVLGSFL-- 383 (1000)
Q Consensus 319 ~v~~~------~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~l~~~iv~~~~---GlPL-Al~~lg~~L-- 383 (1000)
..... ......+++++++.++..+++...+. ......+ +..+.++++++ |.|. |+..+-...
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 32111 01123899999999999999998753 2222222 34667777777 8876 443332222
Q ss_pred c----CCCHHHHHHHHHHhhcCCCcchhhHHHhhhcCCChhhHHHhhhhhcccC-CcCHHHHHHHHhcCCCCc------c
Q 001889 384 N----GRSLDQWKSTLERLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFN-LEDRDYVTKVLDGCDFSP------V 452 (1000)
Q Consensus 384 ~----~~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~la~f~~-~~~~~~~~~~~~~~~~~~------~ 452 (1000)
. ..+.+.+..++..... ..+.-++++|++.++.++..++.... +...+....+...-|..+ .
T Consensus 252 a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 324 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFS 324 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred hcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHH
Confidence 1 2467778777776532 45667788999999988887876111 111122333333333222 3
Q ss_pred hhhHHhhcccceEEe
Q 001889 453 IGIEVLINKSLITIL 467 (1000)
Q Consensus 453 ~~l~~L~~~sLi~~~ 467 (1000)
..+..|.++++|...
T Consensus 325 ~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 325 DIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCEEEE
Confidence 447889999999864
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=1.1e-11 Score=130.52 Aligned_cols=122 Identities=23% Similarity=0.330 Sum_probs=101.0
Q ss_pred cccccCCCccccccchhhcCCCCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCcccCc-ccCCCCCCcEEEeeC
Q 001889 513 TTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKTLCLSG 590 (1000)
Q Consensus 513 ~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~ 590 (1000)
+.++.++. .+..+|..+ .++|++|+|++|.+..+ |..+..+++|++|+|++|. +..+|. .+..+++|++|+|++
T Consensus 22 ~~v~c~~~-~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCC-CcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 35677654 577788755 38999999999999987 5668999999999999987 566764 468999999999999
Q ss_pred CCCCcccCc-cccCcCCcceeecccccccCCCccccCCCCCcEEEccCCC
Q 001889 591 CSELENVPE-NMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCK 639 (1000)
Q Consensus 591 c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~ 639 (1000)
| .+..+|. .+..+++|++|+|++|.+..+|..+..+++|++|++++|.
T Consensus 98 N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 98 N-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC
T ss_pred C-cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc
Confidence 6 5556654 4789999999999999999999888888888888888775
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.34 E-value=4.7e-14 Score=165.15 Aligned_cols=224 Identities=23% Similarity=0.251 Sum_probs=129.6
Q ss_pred ccccccCCCcccc----ccchhhcCCCCCCeeeccCCccccc-CCccc-----cCCCCCEEeccCCCCCc----ccCccc
Q 001889 512 NTTLVLSGCSKLM----KFPEILRSMEDLSELFLDGTSITEV-PSSIE-----LLTGLQLLNLSDCKDLV----RLPSRI 577 (1000)
Q Consensus 512 ~~~L~Ls~~~~l~----~~p~~~~~l~~L~~L~L~~~~i~~l-p~si~-----~L~~L~~L~L~~c~~l~----~lp~~i 577 (1000)
.+.|++++|.--. .++..+..+++|++|++++|.+... +..+. .+++|++|+|++|.... .++..+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 4467777764222 3455666677788888877776532 11121 25577788887775322 245566
Q ss_pred CCCCCCcEEEeeCCCCCccc------CccccCcCCcceeecccccccC-----CCccccCCCCCcEEEccCCCCCCCCCC
Q 001889 578 NGLKSLKTLCLSGCSELENV------PENMEKIESLEELDISGTAIRQ-----PPSSIFLMKNLKELSFRGCKGPPSSTS 646 (1000)
Q Consensus 578 ~~l~~L~~L~Ls~c~~l~~l------p~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~c~~~~~~~~ 646 (1000)
..+++|++|++++|. +... +.....+++|++|++++|.+.. ++..+..+++|++|++++|......
T Consensus 224 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-- 300 (461)
T 1z7x_W 224 ASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG-- 300 (461)
T ss_dssp HHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH--
T ss_pred HhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH--
Confidence 667778888887763 3321 1222356777788887777765 4556666777888887777531100
Q ss_pred CccccCcccccCCC-CCCCCCCeecCCCCCCCCCC---cccccCCCCcCcEEeCCCCCCccc-c----cccc-CCCCcCE
Q 001889 647 CSWRFPFNLMLPSL-SGLCSLTKLDLSDCNIQEGA---IPRDIGNLSSLEELYLSKNSFVSL-P----ATIS-LLFKLEE 716 (1000)
Q Consensus 647 ~~~~~p~~~~~~~l-~~l~~L~~L~Ls~~~l~~~~---ip~~l~~l~~L~~L~Ls~n~l~~l-p----~~i~-~l~~L~~ 716 (1000)
...+...+ ...++|+.|++++|.+.... ++..+..+++|+.|+|++|.+... + ..+. .+++|+.
T Consensus 301 ------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 301 ------ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp ------HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred ------HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 00011111 12357777777777765422 455566677777777777776632 1 2222 2567777
Q ss_pred EEEcCCcCCC----ccCCC---CCCccEEeeeCCC
Q 001889 717 LELEDCKRLQ----SLPQL---PPNIVSVSVNDCA 744 (1000)
Q Consensus 717 L~L~~c~~L~----~lp~l---~~~L~~L~~~~C~ 744 (1000)
|+|++|..-. .+|.. .++|+.|++++|.
T Consensus 375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 7777774321 34422 3677777777764
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=3.2e-13 Score=166.46 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=72.9
Q ss_pred ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccccccCCCccccCC
Q 001889 548 EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLM 627 (1000)
Q Consensus 548 ~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L 627 (1000)
..|..+..+.+|+.|+|++|. +..+|..+.++++|++|+|++| .+..+|..+++|++|++|+|++|.++.+|..++.|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 334455556666666666654 3455555556666666666654 33456665666666666666666666666666666
Q ss_pred CCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCc-CcEEeCCCCCCc-ccc
Q 001889 628 KNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSS-LEELYLSKNSFV-SLP 705 (1000)
Q Consensus 628 ~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~-L~~L~Ls~n~l~-~lp 705 (1000)
++|++|+|++|.. ..++..++.+++|+.|+|++|.+. +.+|..+..+.. +..|+|++|.++ .+|
T Consensus 293 ~~L~~L~L~~N~l-------------~~lp~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 293 FQLKYFYFFDNMV-------------TTLPWEFGNLCNLQFLGVEGNPLE-KQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TTCSEEECCSSCC-------------CCCCSSTTSCTTCCCEECTTSCCC-SHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCEEECCCCCC-------------CccChhhhcCCCccEEeCCCCccC-CCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 6666666665542 112344555566666666666553 234443332211 122455555554 222
Q ss_pred ccccCCCCcCEEEEcCC
Q 001889 706 ATISLLFKLEELELEDC 722 (1000)
Q Consensus 706 ~~i~~l~~L~~L~L~~c 722 (1000)
..|+.|+++++
T Consensus 359 ------~~l~~l~l~~n 369 (727)
T 4b8c_D 359 ------HERRFIEINTD 369 (727)
T ss_dssp ------CC---------
T ss_pred ------cccceeEeecc
Confidence 24455555554
No 134
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=5.5e-11 Score=135.31 Aligned_cols=274 Identities=14% Similarity=0.087 Sum_probs=159.2
Q ss_pred cccccccchhhHHHhhcccCCC-CCCCcEEEEEEecCCCChhHHHHHHHHHhhccc---ceEEEEechhHh-----HHhh
Q 001889 187 VLKKLVGIDSRLKELRSLIDGG-PNDDVRMIGICGMGGLGKTTLARVVYDTISMNL---KGVVFLPMLEKN-----LKKK 257 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---~~~~~~~~~~~~-----~~~~ 257 (1000)
.+..++||+.+++.+..++... .....+.+.|+|++|+||||||+++++.+...+ ...+++...... ....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 3478999999999999888642 014456899999999999999999999876653 234455422111 1110
Q ss_pred hcc------CCccchhhhHHHHHHHhc--CCCcEEEecCCCCHH------HHHHHhcCcCC-CCCCceEEEEeCCcchhc
Q 001889 258 LAD------NSIWNVDDGINILASRLQ--HKKVLLVIDDVVDIK------QLEYLAGKREW-FGSGSKIIITSRDEHLLK 322 (1000)
Q Consensus 258 ~~~------~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~------~l~~l~~~~~~-~~~gsrIIiTTR~~~v~~ 322 (1000)
... .......+....+.+.+. +++.+||||+++... .+..+...... ...+..+|+||++.....
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 000 011123344555555554 348999999996643 23344322211 134567788888654322
Q ss_pred ccC-------CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhC---CCchHHHHHhhhh------c--
Q 001889 323 THG-------MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAG---GLPVALEVLGSFL------N-- 384 (1000)
Q Consensus 323 ~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~---GlPLAl~~lg~~L------~-- 384 (1000)
... ....+++++++.++..+++...+........-..+..+.++++++ |.|..+..+.... .
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~ 257 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKD 257 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 211 124799999999999999987653211111112345666777777 9988443332221 1
Q ss_pred -CCCHHHHHHHHHHhhcCCCcchhhHHHhhhcCCChhhHHHhhhhhcccC-CcC---HHHH----HHHHhcCCCCc----
Q 001889 385 -GRSLDQWKSTLERLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFN-LED---RDYV----TKVLDGCDFSP---- 451 (1000)
Q Consensus 385 -~~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~la~f~~-~~~---~~~~----~~~~~~~~~~~---- 451 (1000)
..+.+.+..++.... ...+.-++.+++..++.++..++.+.. +.. ...+ ..+....+..+
T Consensus 258 ~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~ 330 (386)
T 2qby_A 258 TKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQR 330 (386)
T ss_dssp SSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHH
T ss_pred CccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHH
Confidence 135566666665543 245667788999999999888886433 211 2111 22222222222
Q ss_pred --chhhHHhhcccceEEe
Q 001889 452 --VIGIEVLINKSLITIL 467 (1000)
Q Consensus 452 --~~~l~~L~~~sLi~~~ 467 (1000)
...++.|.+.++|...
T Consensus 331 ~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 331 RVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 3447788888888753
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=8.5e-13 Score=162.61 Aligned_cols=113 Identities=21% Similarity=0.264 Sum_probs=54.3
Q ss_pred CcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCc
Q 001889 574 PSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPF 653 (1000)
Q Consensus 574 p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~ 653 (1000)
|..+..+++|+.|+|++|. +..+|..+..+++|++|+|++|.+..+|..++.|++|++|+|++|...
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~------------ 283 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT------------ 283 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS------------
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC------------
Confidence 4444455555555555432 334554455555555555555555555555555555555555555421
Q ss_pred ccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCc
Q 001889 654 NLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFV 702 (1000)
Q Consensus 654 ~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~ 702 (1000)
.++..++.|++|++|+|++|.+.. +|..|+.+++|+.|+|++|.|+
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCC
T ss_pred -ccChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccC
Confidence 122344455555555555555432 4555555555555555555554
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=2.4e-12 Score=125.64 Aligned_cols=126 Identities=20% Similarity=0.200 Sum_probs=65.0
Q ss_pred CCcEEEeeCCCCC-cccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCC
Q 001889 582 SLKTLCLSGCSEL-ENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSL 660 (1000)
Q Consensus 582 ~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l 660 (1000)
+|++|++++|... +.+|..+..+++|++|++++|.+..+ ..++.+++|++|++++|..... ++..+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~------------~~~~~ 84 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG------------LEVLA 84 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC------------THHHH
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch------------HHHHh
Confidence 3444444443222 13444444444444444444444444 3344444444444444442110 11222
Q ss_pred CCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc----cccCCCCcCEEEEc
Q 001889 661 SGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA----TISLLFKLEELELE 720 (1000)
Q Consensus 661 ~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~ 720 (1000)
..+++|+.|++++|.+.....+..++.+++|+.|++++|.++.+|. .+..+++|+.|+++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 3355566666666665431123567777777777777777777765 56777777777765
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.26 E-value=7.7e-13 Score=160.03 Aligned_cols=222 Identities=16% Similarity=0.038 Sum_probs=137.2
Q ss_pred ecccccccCCCccccccchhhcC-CC-CCCeeeccCCc-cc--ccCCccccCCCCCEEeccCCCCCcc----cCcccCCC
Q 001889 510 IENTTLVLSGCSKLMKFPEILRS-ME-DLSELFLDGTS-IT--EVPSSIELLTGLQLLNLSDCKDLVR----LPSRINGL 580 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~~-l~-~L~~L~L~~~~-i~--~lp~si~~L~~L~~L~L~~c~~l~~----lp~~i~~l 580 (1000)
.+.+.|+|++|.--...+..+.. ++ +|++|+|+++. +. .++..+..+++|++|+|++|..... ++..+..+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 34556777776422223333332 33 38888887754 22 2333345678888888888753221 33334467
Q ss_pred CCCcEEEeeCCCCC----cccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccc
Q 001889 581 KSLKTLCLSGCSEL----ENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLM 656 (1000)
Q Consensus 581 ~~L~~L~Ls~c~~l----~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~ 656 (1000)
++|++|++++|... ..++..+.++++|++|++++|.+..+|..+..+++|++|+++.+..... ....
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---------~~~~ 262 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG---------MPEK 262 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTT---------CTTS
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccc---------hHHH
Confidence 78888888775432 2445556677888888888888777777777788888888876432211 1122
Q ss_pred cCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCc--cccccccCCCCcCEEEEcCCcCCCccC---CC
Q 001889 657 LPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFV--SLPATISLLFKLEELELEDCKRLQSLP---QL 731 (1000)
Q Consensus 657 ~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~lp---~l 731 (1000)
...+..+++|+.|+++++.. ..+|..+..+++|++|+|++|.++ .++..+..+++|+.|+|+++-.-..++ ..
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~--~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~ 340 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGP--NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCT--TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred HHHhhccccccccCccccch--hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHh
Confidence 24566677788888776533 347777777888888888888765 333446777888888887442222222 22
Q ss_pred CCCccEEeeeC
Q 001889 732 PPNIVSVSVND 742 (1000)
Q Consensus 732 ~~~L~~L~~~~ 742 (1000)
.++|+.|++.+
T Consensus 341 ~~~L~~L~L~~ 351 (592)
T 3ogk_B 341 CKQLKRLRIER 351 (592)
T ss_dssp CTTCCEEEEEC
T ss_pred CCCCCEEEeec
Confidence 35677888774
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=7.4e-12 Score=122.13 Aligned_cols=103 Identities=25% Similarity=0.375 Sum_probs=57.4
Q ss_pred CCCCeeeccCCccc--ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceee
Q 001889 534 EDLSELFLDGTSIT--EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELD 611 (1000)
Q Consensus 534 ~~L~~L~L~~~~i~--~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 611 (1000)
++|+.|+++++.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666666 566656666666666666654 3333 4455566666666665443333555555555666666
Q ss_pred cccccccCCC--ccccCCCCCcEEEccCC
Q 001889 612 ISGTAIRQPP--SSIFLMKNLKELSFRGC 638 (1000)
Q Consensus 612 L~~~~i~~lp--~~i~~L~~L~~L~L~~c 638 (1000)
+++|.+..+| ..+..+++|++|++++|
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 6666555542 44444444444444444
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.22 E-value=5.3e-13 Score=161.47 Aligned_cols=195 Identities=24% Similarity=0.268 Sum_probs=94.2
Q ss_pred cccccccCCCccccc--cchhhcCCCCCCeeeccCCcccc-----cCCccccCCCCCEEeccCCC-CC--cccCcccCCC
Q 001889 511 ENTTLVLSGCSKLMK--FPEILRSMEDLSELFLDGTSITE-----VPSSIELLTGLQLLNLSDCK-DL--VRLPSRINGL 580 (1000)
Q Consensus 511 ~~~~L~Ls~~~~l~~--~p~~~~~l~~L~~L~L~~~~i~~-----lp~si~~L~~L~~L~L~~c~-~l--~~lp~~i~~l 580 (1000)
+.+.|+|++|..+.. ++....++++|++|+|++|.+.. ++.....+++|+.|++++|. .+ ..++..+.++
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~ 210 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence 444566666644443 44555456666666666655432 22222345566666666654 11 1122222345
Q ss_pred CCCcEEEeeCCCCCcccCccccCcCCcceeecccc-------cccCCCccccCCCCCcEEE-ccCCCCCCCCCCCccccC
Q 001889 581 KSLKTLCLSGCSELENVPENMEKIESLEELDISGT-------AIRQPPSSIFLMKNLKELS-FRGCKGPPSSTSCSWRFP 652 (1000)
Q Consensus 581 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~-------~i~~lp~~i~~L~~L~~L~-L~~c~~~~~~~~~~~~~p 652 (1000)
++|++|++++|..+..+|..+..+++|++|+++++ .+..++..+..+++|+.|. +.+..
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~------------- 277 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV------------- 277 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-------------
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-------------
Confidence 66666666666555555555556666666654332 1222233344444444441 11110
Q ss_pred cccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCc--cccccccCCCCcCEEEE
Q 001889 653 FNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFV--SLPATISLLFKLEELEL 719 (1000)
Q Consensus 653 ~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L 719 (1000)
...++..+..+++|++|+|++|.+....++..+..+++|+.|++++| +. .++.....+++|+.|+|
T Consensus 278 ~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 01111222345666666666666543333334455666666666665 32 22323334566666666
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.22 E-value=1.9e-10 Score=131.01 Aligned_cols=269 Identities=12% Similarity=0.084 Sum_probs=157.8
Q ss_pred ccccccchhhHHHhhcccCCC-CCCCcEEEEEEecCCCChhHHHHHHHHHhhccc------ceEEEEechhH-----hHH
Q 001889 188 LKKLVGIDSRLKELRSLIDGG-PNDDVRMIGICGMGGLGKTTLARVVYDTISMNL------KGVVFLPMLEK-----NLK 255 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~-----~~~ 255 (1000)
+..++||+.+++++..++... .....+.+.|+|++|+||||||+++++...... ...+++..... ...
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 478999999999999888432 014456899999999999999999998775432 22344442211 111
Q ss_pred h---hhcc---CCccchhhhHHHHHHHhc--CCCcEEEecCCCCHHH----HHHH---hcCcCCC--CCCceEEEEeCCc
Q 001889 256 K---KLAD---NSIWNVDDGINILASRLQ--HKKVLLVIDDVVDIKQ----LEYL---AGKREWF--GSGSKIIITSRDE 318 (1000)
Q Consensus 256 ~---~~~~---~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~~----l~~l---~~~~~~~--~~gsrIIiTTR~~ 318 (1000)
. +... .......+....+.+.+. +++.+||||+++.... .+.+ ....... ..+..+|.||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 1 1110 111123344555666663 4578999999987542 2222 2222111 3456788888765
Q ss_pred ch--------hcccCCCceEecCCCChHHHHHHHHHhhcc---cCCCChhHHHHHHHHHHHhC---CCch-HHHHHhhhh
Q 001889 319 HL--------LKTHGMDEVYKPSSLNYDEAFQLFNMKAFK---SQQPSEECVQLSERVLQYAG---GLPV-ALEVLGSFL 383 (1000)
Q Consensus 319 ~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~l~~~iv~~~~---GlPL-Al~~lg~~L 383 (1000)
.. ..... ...+.+++++.++..+++...+.. .....+ +..+.++++++ |.|- ++.++....
T Consensus 178 ~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 178 GFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp TTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 32 11111 147899999999999999887532 222222 34667788887 9994 333322221
Q ss_pred ---c--C---CCHHHHHHHHHHhhcCCCcchhhHHHhhhcCCChhhHHHhhhhhcccCCcC---HH----HHHHHHhcCC
Q 001889 384 ---N--G---RSLDQWKSTLERLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFNLED---RD----YVTKVLDGCD 448 (1000)
Q Consensus 384 ---~--~---~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~la~f~~~~~---~~----~~~~~~~~~~ 448 (1000)
. + .+.+.+..++.... ...+.-++.+|+.+++..++.++....+.+ .. ....+....+
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG 326 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC
Confidence 1 1 35677777776553 234666788999999998888885544332 12 1222323333
Q ss_pred CCc------chhhHHhhcccceEEe
Q 001889 449 FSP------VIGIEVLINKSLITIL 467 (1000)
Q Consensus 449 ~~~------~~~l~~L~~~sLi~~~ 467 (1000)
..+ ...++.|...+++...
T Consensus 327 ~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 327 LEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 222 2446778888888764
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.21 E-value=1.4e-12 Score=157.61 Aligned_cols=218 Identities=14% Similarity=0.087 Sum_probs=108.0
Q ss_pred ecccccccCCCccccc----cchhhcCCCCCCeeeccCCccc-----ccCCccccCCCCCEEeccCCCCCcccCcccCCC
Q 001889 510 IENTTLVLSGCSKLMK----FPEILRSMEDLSELFLDGTSIT-----EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGL 580 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~----~p~~~~~l~~L~~L~L~~~~i~-----~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l 580 (1000)
.+.++|+|++|..... ++.....+++|+.|+++++.+. .++..+..+++|+.|+|++|. +..+|..+.++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhh
Confidence 3444566665532111 3334444566666666665553 233334556666666666654 33455555566
Q ss_pred CCCcEEEeeCCCCC---cccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCccccc
Q 001889 581 KSLKTLCLSGCSEL---ENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLML 657 (1000)
Q Consensus 581 ~~L~~L~Ls~c~~l---~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~ 657 (1000)
++|++|+++++... ...+..+..+++|+.|+++++....+|..+..+++|++|++++|... . ..+.
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~-~----------~~~~ 311 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE-T----------EDHC 311 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCC-H----------HHHH
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCC-H----------HHHH
Confidence 66666666543222 22334455556666666665544555555566666666666666511 0 0011
Q ss_pred CCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCC-----------CCCc--cccccccCCCCcCEEEEcCCcC
Q 001889 658 PSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSK-----------NSFV--SLPATISLLFKLEELELEDCKR 724 (1000)
Q Consensus 658 ~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~-----------n~l~--~lp~~i~~l~~L~~L~L~~c~~ 724 (1000)
..+..+++|+.|+++ +++.+..++.....+++|++|+|++ +.++ .++.....+++|++|++ .|..
T Consensus 312 ~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~ 389 (592)
T 3ogk_B 312 TLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSD 389 (592)
T ss_dssp HHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESC
T ss_pred HHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCC
Confidence 123455566666665 3333333333344555666666662 2333 23333344566666666 2333
Q ss_pred CCc-----cCCCCCCccEEeee
Q 001889 725 LQS-----LPQLPPNIVSVSVN 741 (1000)
Q Consensus 725 L~~-----lp~l~~~L~~L~~~ 741 (1000)
+.. +....++|+.|++.
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEE
T ss_pred ccHHHHHHHHhhCCCCcEEEEe
Confidence 321 11223456666665
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=7.9e-11 Score=120.20 Aligned_cols=127 Identities=28% Similarity=0.371 Sum_probs=65.6
Q ss_pred CeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcc--cCCCCCCcEEEeeCCCCCcccCccccCcCCcceeeccc
Q 001889 537 SELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSR--INGLKSLKTLCLSGCSELENVPENMEKIESLEELDISG 614 (1000)
Q Consensus 537 ~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~--i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 614 (1000)
+.|+++++.++.+|..+.. +|+.|+|++|. +..++.. +..+++|++|+|++|......|..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5666666666666654432 56666666654 3444332 45555555555555433333344555555555555555
Q ss_pred ccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCcEE
Q 001889 615 TAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLEEL 694 (1000)
Q Consensus 615 ~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L 694 (1000)
|.+..++. ..+.++++|+.|+|++|++.. ..|..+..+++|+.|
T Consensus 88 N~l~~~~~-----------------------------------~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 88 NKIKEISN-----------------------------------KMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSL 131 (192)
T ss_dssp CCCCEECS-----------------------------------SSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEE
T ss_pred CcCCccCH-----------------------------------HHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEE
Confidence 55544422 123344445555555554432 234555556666666
Q ss_pred eCCCCCCc
Q 001889 695 YLSKNSFV 702 (1000)
Q Consensus 695 ~Ls~n~l~ 702 (1000)
+|++|.+.
T Consensus 132 ~L~~N~l~ 139 (192)
T 1w8a_A 132 NLASNPFN 139 (192)
T ss_dssp ECTTCCBC
T ss_pred EeCCCCcc
Confidence 66666554
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=1.5e-11 Score=123.68 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=62.2
Q ss_pred cccCCCCCEEeccCCCCCcccCcccCCCC-CCcEEEeeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCc
Q 001889 553 IELLTGLQLLNLSDCKDLVRLPSRINGLK-SLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLK 631 (1000)
Q Consensus 553 i~~L~~L~~L~L~~c~~l~~lp~~i~~l~-~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~ 631 (1000)
+..+.+|+.|++++|. +..+|. +..+. +|++|++++| .+..+ ..+..+++|++|++++|.+..+|..+
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~------- 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL------- 83 (176)
T ss_dssp EECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCH-------
T ss_pred cCCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcch-------
Confidence 3445555555555553 334433 22332 5555555553 23333 34445555555555555554444332
Q ss_pred EEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCccc--ccCCCCcCcEEeCCCCCCcccccc--
Q 001889 632 ELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPR--DIGNLSSLEELYLSKNSFVSLPAT-- 707 (1000)
Q Consensus 632 ~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~--~l~~l~~L~~L~Ls~n~l~~lp~~-- 707 (1000)
+..+++|+.|+|++|.+.. +|. .+..+++|+.|+|++|.+..+|..
T Consensus 84 ----------------------------~~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~ 133 (176)
T 1a9n_A 84 ----------------------------DQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRL 133 (176)
T ss_dssp ----------------------------HHHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHH
T ss_pred ----------------------------hhcCCCCCEEECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCCCcHhHHH
Confidence 1333444444444444432 333 455555566666666655555543
Q ss_pred --ccCCCCcCEEEEcCC
Q 001889 708 --ISLLFKLEELELEDC 722 (1000)
Q Consensus 708 --i~~l~~L~~L~L~~c 722 (1000)
+..+++|+.|++++|
T Consensus 134 ~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 134 YVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHHHCTTCSEETTEEC
T ss_pred HHHHHCCccceeCCCcC
Confidence 555555555555544
No 144
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.16 E-value=1.9e-10 Score=121.58 Aligned_cols=193 Identities=14% Similarity=0.093 Sum_probs=118.9
Q ss_pred cccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEE----EechhHhHHhhhc---
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVF----LPMLEKNLKKKLA--- 259 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~----~~~~~~~~~~~~~--- 259 (1000)
....++|++..++.+..++... ...+.+.|+|++|+||||||+++++.+...+..... .............
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 98 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHT--CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEE
T ss_pred cHHHHhCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceE
Confidence 4567999999999999888643 223578999999999999999999877543311100 0000000000000
Q ss_pred --cCCccchhhhHHHHHHHh-----cCCCcEEEecCCCC--HHHHHHHhcCcCCCCCCceEEEEeCCcchhcc--cCCCc
Q 001889 260 --DNSIWNVDDGINILASRL-----QHKKVLLVIDDVVD--IKQLEYLAGKREWFGSGSKIIITSRDEHLLKT--HGMDE 328 (1000)
Q Consensus 260 --~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~--~~~~~ 328 (1000)
.............+.+.+ .+++.+|||||++. ...++.+.........+.++|+||+....... .....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~ 178 (250)
T 1njg_A 99 EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 178 (250)
T ss_dssp EEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred EecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhh
Confidence 000000111122222222 24678999999965 44566665544444567889999876532211 12235
Q ss_pred eEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 001889 329 VYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFL 383 (1000)
Q Consensus 329 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L 383 (1000)
.+++++++.++..+++...+........ .+..+.++++++|.|..+..+...+
T Consensus 179 ~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 179 QFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7899999999999999887754332211 2567889999999999888766443
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=4.5e-11 Score=120.19 Aligned_cols=106 Identities=19% Similarity=0.248 Sum_probs=82.8
Q ss_pred hcCCCCCCeeeccCCcccccCCccccCC-CCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccc-cCcCCc
Q 001889 530 LRSMEDLSELFLDGTSITEVPSSIELLT-GLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENM-EKIESL 607 (1000)
Q Consensus 530 ~~~l~~L~~L~L~~~~i~~lp~si~~L~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L 607 (1000)
+.++++|+.|++++|.+..+|. +..+. +|++|+|++|. +..+ ..+..+++|++|++++| .+..+|..+ ..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 3458899999999999998865 55544 99999999986 5556 56889999999999986 466777554 889999
Q ss_pred ceeecccccccCCCc--cccCCCCCcEEEccCCC
Q 001889 608 EELDISGTAIRQPPS--SIFLMKNLKELSFRGCK 639 (1000)
Q Consensus 608 ~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~c~ 639 (1000)
++|++++|.+..+|. .+..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 999999999887765 56666666666666654
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=3e-10 Score=115.93 Aligned_cols=124 Identities=22% Similarity=0.259 Sum_probs=76.1
Q ss_pred cEEEeeCCCCCcccCccccCcCCcceeecccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCC
Q 001889 584 KTLCLSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGL 663 (1000)
Q Consensus 584 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l 663 (1000)
+++++++ +.+..+|..+. ++|++|++++|.+..+|..+..+++|+.|++++|..... .+..+.++
T Consensus 13 ~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i------------~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL------------SNQSFSNM 77 (193)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC------------CTTTTTTC
T ss_pred CEEEcCC-CCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe------------CHhHccCC
Confidence 3455544 33445554432 356666666666666665666666666666666553211 01345666
Q ss_pred CCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCc
Q 001889 664 CSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELEDCK 723 (1000)
Q Consensus 664 ~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 723 (1000)
++|+.|+|++|.+.. ..|..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 78 ~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 78 TQLLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCccCE-eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 777777777777643 234467777888888888888877776 36677777777777664
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.14 E-value=2.4e-12 Score=155.66 Aligned_cols=226 Identities=17% Similarity=0.138 Sum_probs=126.5
Q ss_pred ecccccccCCCccccccchhhc-CCCCCCeeeccCC-cccc--cCCccccCCCCCEEeccCCCCC----cccCcccCCCC
Q 001889 510 IENTTLVLSGCSKLMKFPEILR-SMEDLSELFLDGT-SITE--VPSSIELLTGLQLLNLSDCKDL----VRLPSRINGLK 581 (1000)
Q Consensus 510 ~~~~~L~Ls~~~~l~~~p~~~~-~l~~L~~L~L~~~-~i~~--lp~si~~L~~L~~L~L~~c~~l----~~lp~~i~~l~ 581 (1000)
.+.+.|+|++|......+..+. .+++|++|+|+++ .+.. ++..+..+++|++|+|++|... ..++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3445666666542222222232 4666666666665 3332 3443445666666666666511 11333333556
Q ss_pred CCcEEEeeCCC-CCc--ccCccccCcCCcceeecccc-cccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCccccc
Q 001889 582 SLKTLCLSGCS-ELE--NVPENMEKIESLEELDISGT-AIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLML 657 (1000)
Q Consensus 582 ~L~~L~Ls~c~-~l~--~lp~~l~~l~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~ 657 (1000)
+|++|++++|. .+. .++..+..+++|++|++++| .+..+|..+..+++|+.|++..|...... ..+..++
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~l~ 258 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP------DVYSGLS 258 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH------HHHHHHH
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch------hhHHHHH
Confidence 66666666654 111 12222344566666666665 44445555566666777666655421000 0011222
Q ss_pred CCCCCCCCCCee-cCCCCCCCCCCcccccCCCCcCcEEeCCCCCCc--cccccccCCCCcCEEEEcCCcCCCccC---CC
Q 001889 658 PSLSGLCSLTKL-DLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFV--SLPATISLLFKLEELELEDCKRLQSLP---QL 731 (1000)
Q Consensus 658 ~~l~~l~~L~~L-~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~lp---~l 731 (1000)
..+.++++|+.| .+.... ...++..+..+++|++|+|++|.++ .++..+..+++|+.|+|++|..-..++ ..
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~ 336 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAV--PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336 (594)
T ss_dssp HHHHTCTTCCEEECCBTCC--GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred HHHhcCCCcccccCCcccc--hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHh
Confidence 345677777777 343322 2346666667899999999999876 345556789999999999982211222 23
Q ss_pred CCCccEEeeeCC
Q 001889 732 PPNIVSVSVNDC 743 (1000)
Q Consensus 732 ~~~L~~L~~~~C 743 (1000)
.++|+.|++.+|
T Consensus 337 ~~~L~~L~L~~~ 348 (594)
T 2p1m_B 337 CKDLRELRVFPS 348 (594)
T ss_dssp CTTCCEEEEECS
T ss_pred CCCCCEEEEecC
Confidence 478999999654
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.14 E-value=1.7e-10 Score=117.81 Aligned_cols=125 Identities=20% Similarity=0.212 Sum_probs=104.7
Q ss_pred cccccCCCccccccchhhcCCCCCCeeeccCCcccccCCc--cccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeC
Q 001889 513 TTLVLSGCSKLMKFPEILRSMEDLSELFLDGTSITEVPSS--IELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSG 590 (1000)
Q Consensus 513 ~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~s--i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 590 (1000)
++++++++ .++.+|..+. ++|++|+|++|.+..++.. ++.+++|++|+|++|......|..+.++++|++|+|++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 46788876 4678887654 3999999999999999874 89999999999999885555588899999999999999
Q ss_pred CCCCcccCccccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCC
Q 001889 591 CSELENVPENMEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKG 640 (1000)
Q Consensus 591 c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~ 640 (1000)
|......|..+..+++|++|+|++|.+..+ |..+..+++|++|++++|..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 755444556689999999999999999877 67788888888888888763
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=2.3e-10 Score=116.89 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=44.0
Q ss_pred eeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccccc
Q 001889 538 ELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAI 617 (1000)
Q Consensus 538 ~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i 617 (1000)
.++++++.++.+|..+. ++|+.|+|++|. +..+|..+.++++|++|+|++|......+..+..+++|++|+|++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 34444444444444332 344444444433 334444444444455555544322222223344455555555555555
Q ss_pred cCCC-ccccCCCCCcEEEccCCC
Q 001889 618 RQPP-SSIFLMKNLKELSFRGCK 639 (1000)
Q Consensus 618 ~~lp-~~i~~L~~L~~L~L~~c~ 639 (1000)
..++ ..+..+++|+.|+|++|.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCC
Confidence 4442 234445555555555444
No 150
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.11 E-value=5.9e-10 Score=127.03 Aligned_cols=295 Identities=15% Similarity=0.142 Sum_probs=169.1
Q ss_pred ccccccchhhHHHhhcccCCC---CCCCcEEEEEEecCCCChhHHHHHHHHHhhccc-ceEEEEechh-----HhHHh--
Q 001889 188 LKKLVGIDSRLKELRSLIDGG---PNDDVRMIGICGMGGLGKTTLARVVYDTISMNL-KGVVFLPMLE-----KNLKK-- 256 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~-----~~~~~-- 256 (1000)
++.++||+.+++++..++... ..+..+.+.|+|++|+||||||+++++...... ...+++.... .....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 378999999999998887541 112334899999999999999999998876542 3344554221 11111
Q ss_pred -hhcc---CCccchhhhHHHHHHHhc--CCCcEEEecCCCCH--HHHHHHhcCcCCCC----CCceEEEEeCCcchhccc
Q 001889 257 -KLAD---NSIWNVDDGINILASRLQ--HKKVLLVIDDVVDI--KQLEYLAGKREWFG----SGSKIIITSRDEHLLKTH 324 (1000)
Q Consensus 257 -~~~~---~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~--~~l~~l~~~~~~~~----~gsrIIiTTR~~~v~~~~ 324 (1000)
.... ............+.+.+. +++.+||||+++.. ..+..+........ .+..||+||++..+....
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 1100 011123344445555553 56889999999763 44555543332211 366788888865332221
Q ss_pred C-------CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHh---------CCCchHHHHHhhhh---c-
Q 001889 325 G-------MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYA---------GGLPVALEVLGSFL---N- 384 (1000)
Q Consensus 325 ~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~---------~GlPLAl~~lg~~L---~- 384 (1000)
. ....+.+++++.++..+++...+........-..+..+.+++++ +|.|..+..+.... .
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 1 12368999999999999998775421111111235677888888 78875444333221 1
Q ss_pred --C---CCHHHHHHHHHHhhcCCCcchhhHHHhhhcCCChhhHHHhhhhhccc---CC--cCHHHHHH----HHhcCCCC
Q 001889 385 --G---RSLDQWKSTLERLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFF---NL--EDRDYVTK----VLDGCDFS 450 (1000)
Q Consensus 385 --~---~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~la~f~---~~--~~~~~~~~----~~~~~~~~ 450 (1000)
+ .+.+....++..... .. +.-.+..|+.+++.++..++.+. .+ .....+.. +....+..
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~~---~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 328 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVLF---GI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER 328 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHSC---CC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC
T ss_pred HhCCCCcCHHHHHHHHHHHhh---hh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC
Confidence 1 234444444444321 11 22335678888888888777654 22 22222222 22222222
Q ss_pred c------chhhHHhhcccceEEecC-------Cc-------hhhhHHHHHHHHHHHhcc
Q 001889 451 P------VIGIEVLINKSLITILND-------NT-------LWMHDLLQELGQQIVQRQ 489 (1000)
Q Consensus 451 ~------~~~l~~L~~~sLi~~~~~-------~~-------~~mHdlv~~~~~~i~~~~ 489 (1000)
+ ...+..|.++++|..... ++ +..|++++.+...+..++
T Consensus 329 ~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 329 PRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 2 245788999999987532 22 236777777776666543
No 151
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.09 E-value=6.8e-10 Score=115.54 Aligned_cols=179 Identities=12% Similarity=0.086 Sum_probs=114.5
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc-ce-EEEEechhHhHHhhhccCCc
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL-KG-VVFLPMLEKNLKKKLADNSI 263 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~~ 263 (1000)
.....++|++..++.+..++.... .+.+.|+|++|+|||++|+++++.+.... .. .+.+.... .
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-----------~ 79 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKN---IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-----------E 79 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC---CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC-----------T
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc-----------c
Confidence 345679999999999999887532 33489999999999999999998764432 21 11221110 0
Q ss_pred cchhhhHHHHHHHh------cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcchhc-c-cCCCceEecC
Q 001889 264 WNVDDGINILASRL------QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEHLLK-T-HGMDEVYKPS 333 (1000)
Q Consensus 264 ~~~~~~~~~i~~~L------~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~-~-~~~~~~~~l~ 333 (1000)
...+.....+.... ..++.+|||||++.. ...+.+.........+.++|+||+...... . ......+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~ 159 (226)
T 2chg_A 80 RGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (226)
T ss_dssp TCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred cChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecC
Confidence 11112222333332 257889999999764 344455444433456788999988653211 1 1122378999
Q ss_pred CCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001889 334 SLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLG 380 (1000)
Q Consensus 334 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg 380 (1000)
+++.++..+++...+....... ..+..+.+++.++|.|..+..+.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999988775433221 12456788899999998655443
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=1.9e-09 Score=108.26 Aligned_cols=80 Identities=25% Similarity=0.407 Sum_probs=34.6
Q ss_pred CCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCc-ccCCCCCCcEEEeeCCCCCcccCc-cccCcCCcceeecc
Q 001889 536 LSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKTLCLSGCSELENVPE-NMEKIESLEELDIS 613 (1000)
Q Consensus 536 L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~ 613 (1000)
.+.++++++.+..+|..+ .++|+.|++++|. +..+|. .+..+++|++|++++| .+..+|. .+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECC
Confidence 345555555555555433 2455555555544 223322 2344444444444443 2222222 23344444444444
Q ss_pred cccccC
Q 001889 614 GTAIRQ 619 (1000)
Q Consensus 614 ~~~i~~ 619 (1000)
+|.++.
T Consensus 85 ~N~l~~ 90 (177)
T 2o6r_A 85 ENKLQS 90 (177)
T ss_dssp SSCCCC
T ss_pred CCCccc
Confidence 444433
No 153
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=1.4e-12 Score=133.95 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=42.0
Q ss_pred cCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccccccCCCccccCCC
Q 001889 549 VPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQPPSSIFLMK 628 (1000)
Q Consensus 549 lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~ 628 (1000)
+|..+..+++|++|+|++|. +..+| .+.++++|++|++++| .+..+|..+..+++|++|++++|.+..+| .+..++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence 33355555555555555543 33344 4455555555555553 23344544444455555555555554443 333444
Q ss_pred CCcEEEccCC
Q 001889 629 NLKELSFRGC 638 (1000)
Q Consensus 629 ~L~~L~L~~c 638 (1000)
+|++|++++|
T Consensus 116 ~L~~L~l~~N 125 (198)
T 1ds9_A 116 NLRVLYMSNN 125 (198)
T ss_dssp HSSEEEESEE
T ss_pred CCCEEECCCC
Confidence 4444444433
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=3e-09 Score=106.72 Aligned_cols=124 Identities=21% Similarity=0.252 Sum_probs=70.1
Q ss_pred cEEEeeCCCCCcccCccccCcCCcceeecccccccCCCcc-ccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCC
Q 001889 584 KTLCLSGCSELENVPENMEKIESLEELDISGTAIRQPPSS-IFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSG 662 (1000)
Q Consensus 584 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~ 662 (1000)
+.+++++ ..+..+|..+. ++|++|++++|.+..+|.. +..+++|++|++++|..... .+..+..
T Consensus 10 ~~l~~~~-~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~ 74 (177)
T 2o6r_A 10 TEIRCNS-KGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL------------PDGVFDK 74 (177)
T ss_dssp TEEECCS-SCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------------CTTTTTT
T ss_pred CEEEecC-CCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe------------ChhHccC
Confidence 4455544 23444443322 4556666666655555432 35556666666655542211 0122456
Q ss_pred CCCCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCcccccc-ccCCCCcCEEEEcCCc
Q 001889 663 LCSLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPAT-ISLLFKLEELELEDCK 723 (1000)
Q Consensus 663 l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 723 (1000)
+++|+.|++++|.+.. ..+..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+
T Consensus 75 l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 LTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEEECCCCCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 6667777777776643 2233456777777777777777777664 3667777777777764
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=1.1e-11 Score=127.31 Aligned_cols=114 Identities=18% Similarity=0.278 Sum_probs=99.2
Q ss_pred cccccchhhcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCccc
Q 001889 522 KLMKFPEILRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPENM 601 (1000)
Q Consensus 522 ~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l 601 (1000)
.++.+|..+..+++|++|+|++|.+..+| .+..+++|++|+|++|. +..+|..+..+++|++|++++| .+..+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC-cc
Confidence 45667778889999999999999999998 89999999999999986 6688988878899999999997 566677 68
Q ss_pred cCcCCcceeecccccccCCCc--cccCCCCCcEEEccCCC
Q 001889 602 EKIESLEELDISGTAIRQPPS--SIFLMKNLKELSFRGCK 639 (1000)
Q Consensus 602 ~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~c~ 639 (1000)
..+++|++|++++|.+..++. .+..+++|++|++++|.
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 899999999999999988754 67788888888888775
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=5e-09 Score=116.02 Aligned_cols=179 Identities=16% Similarity=0.205 Sum_probs=112.1
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc-c-eEEEEechhHhHHhhhccCCc
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL-K-GVVFLPMLEKNLKKKLADNSI 263 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~ 263 (1000)
.....++|++..++.+..++..+ ..+.+.|+|++|+||||+|+++++.+.... . ..+.+.... .
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-----------~ 83 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDG---NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD-----------D 83 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSC---CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS-----------C
T ss_pred CCHHHHHCCHHHHHHHHHHHHcC---CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc-----------c
Confidence 34567999999999999988653 233389999999999999999998864322 1 122222110 0
Q ss_pred cchhhhHHHHHHHh-------cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcch-hcc-cCCCceEec
Q 001889 264 WNVDDGINILASRL-------QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEHL-LKT-HGMDEVYKP 332 (1000)
Q Consensus 264 ~~~~~~~~~i~~~L-------~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v-~~~-~~~~~~~~l 332 (1000)
...+.....+.... .+++.++|+||++.. ...+.|........+++++|+||+...- ... ......+++
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~ 163 (323)
T 1sxj_B 84 RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRY 163 (323)
T ss_dssp CSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEee
Confidence 01112222222222 345889999999763 3344444333333567888888876432 111 122348899
Q ss_pred CCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchH-HHHHh
Q 001889 333 SSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVA-LEVLG 380 (1000)
Q Consensus 333 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLA-l~~lg 380 (1000)
.+++.++..+++...+....... ..+.+..+++.++|.|.. +..+.
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 164 SKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999988764333221 124577899999999954 44443
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=5.8e-09 Score=116.00 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=57.9
Q ss_pred CCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCCcCc-EEeCCCCCCcccc
Q 001889 627 MKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLSSLE-ELYLSKNSFVSLP 705 (1000)
Q Consensus 627 L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~-~L~Ls~n~l~~lp 705 (1000)
+++|+.|+|.+|....- ....|.+|.+|+.|+|..+ +.. .-+..|..+++|+ .|+|.+ +++.++
T Consensus 225 ~~~L~~l~L~~n~i~~I------------~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI------------PDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBCCCEE------------CTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCCEEC
T ss_pred cCCCeEEECCCCCccee------------cHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc-cceEEc
Confidence 56788888877652211 1135777888888888776 432 2234577888888 888877 677776
Q ss_pred -ccccCCCCcCEEEEcCCcCCCccC
Q 001889 706 -ATISLLFKLEELELEDCKRLQSLP 729 (1000)
Q Consensus 706 -~~i~~l~~L~~L~L~~c~~L~~lp 729 (1000)
..+.+|++|+.|++.++ .++.++
T Consensus 290 ~~aF~~c~~L~~l~l~~n-~i~~I~ 313 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGD-KITTLG 313 (329)
T ss_dssp TTTTTTCTTEEEEEECSS-CCCEEC
T ss_pred hhhhhCCccCCEEEeCCC-ccCccc
Confidence 46788888888888653 355554
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.83 E-value=1.4e-08 Score=101.58 Aligned_cols=100 Identities=20% Similarity=0.311 Sum_probs=62.1
Q ss_pred CeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCcc-ccCcCCcceeecccc
Q 001889 537 SELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPEN-MEKIESLEELDISGT 615 (1000)
Q Consensus 537 ~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~~ 615 (1000)
+.++++++.+..+|..+. ++|++|+|++|......|..+.++++|++|+|++| .+..+|.. +..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 566777777777776553 66777777776533333555666777777777664 45555543 466667777777777
Q ss_pred cccCCCcc-ccCCCCCcEEEccCCC
Q 001889 616 AIRQPPSS-IFLMKNLKELSFRGCK 639 (1000)
Q Consensus 616 ~i~~lp~~-i~~L~~L~~L~L~~c~ 639 (1000)
.+..+|.. +..+++|++|+|++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 66666543 5556666666665554
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=1.5e-08 Score=100.91 Aligned_cols=101 Identities=23% Similarity=0.312 Sum_probs=65.6
Q ss_pred CCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccCcc-ccCcCCcceeeccc
Q 001889 536 LSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVPEN-MEKIESLEELDISG 614 (1000)
Q Consensus 536 L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~ 614 (1000)
.+.|+++++.++.+|..+ .++|++|+|++|......|..+.++++|++|+|++| .+..+|.. +..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 467777777777777655 367777777776533333555667777777777764 34455443 46777777777777
Q ss_pred ccccCCCc-cccCCCCCcEEEccCCC
Q 001889 615 TAIRQPPS-SIFLMKNLKELSFRGCK 639 (1000)
Q Consensus 615 ~~i~~lp~-~i~~L~~L~~L~L~~c~ 639 (1000)
|.+..+|. .+..+++|++|+|++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 77776654 35566666666666654
No 160
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=3e-08 Score=99.16 Aligned_cols=103 Identities=27% Similarity=0.403 Sum_probs=44.6
Q ss_pred cEEEeeCCCCCcccCccccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCCCccccCcccccC-CCC
Q 001889 584 KTLCLSGCSELENVPENMEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLP-SLS 661 (1000)
Q Consensus 584 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~-~l~ 661 (1000)
+.+++++ +.++.+|..+. ++|++|+|++|.+..+ |..+..+++|++|+|++|.... +++ .+.
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------i~~~~~~ 78 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-------------IPTGVFD 78 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------CCTTTTT
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-------------cChhHhC
Confidence 3444444 23444444332 4455555555555544 3334444444444444443211 111 123
Q ss_pred CCCCCCeecCCCCCCCCCCccc-ccCCCCcCcEEeCCCCCCccc
Q 001889 662 GLCSLTKLDLSDCNIQEGAIPR-DIGNLSSLEELYLSKNSFVSL 704 (1000)
Q Consensus 662 ~l~~L~~L~Ls~~~l~~~~ip~-~l~~l~~L~~L~Ls~n~l~~l 704 (1000)
++++|+.|+|++|++.. +|. .+..+++|+.|+|++|.+...
T Consensus 79 ~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKS--IPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CcchhhEEECCCCccce--eCHHHhccccCCCEEEeCCCCcccc
Confidence 44444444444444432 332 244455555555555554433
No 161
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.75 E-value=3.3e-08 Score=98.47 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=31.7
Q ss_pred CCCCCCCCeecCCCCCCCCCCccc-ccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCc
Q 001889 660 LSGLCSLTKLDLSDCNIQEGAIPR-DIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELEDCK 723 (1000)
Q Consensus 660 l~~l~~L~~L~Ls~~~l~~~~ip~-~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 723 (1000)
+.++++|+.|+|++|++.. +|. .+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 3444445555555554432 222 34555555566665555555554 25555555555555543
No 162
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=2.8e-08 Score=110.11 Aligned_cols=180 Identities=14% Similarity=0.134 Sum_probs=112.9
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc-c-eEEEEechhHhHHhhhccCCc
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL-K-GVVFLPMLEKNLKKKLADNSI 263 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~ 263 (1000)
....+++|++..++.+..++..+ ..+.+.|+|++|+||||+|+++++.+.... . ....+......
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~---------- 88 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG---SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER---------- 88 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT---CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH----------
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC---CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC----------
Confidence 34567999999999999888653 333489999999999999999998764332 1 11222211100
Q ss_pred cchhhhHHHHHHHh------cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcchh-ccc-CCCceEecC
Q 001889 264 WNVDDGINILASRL------QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEHLL-KTH-GMDEVYKPS 333 (1000)
Q Consensus 264 ~~~~~~~~~i~~~L------~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~~-~~~~~~~l~ 333 (1000)
..+.....+.+.. .+++.++|+||++.. ...+.|.........+.++|+||....-. ... .....+++.
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~ 167 (327)
T 1iqp_A 89 -GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFR 167 (327)
T ss_dssp -HHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECC
T ss_pred -chHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEec
Confidence 0111112222221 156789999999763 44555554444445678899888764321 110 112378999
Q ss_pred CCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhh
Q 001889 334 SLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGS 381 (1000)
Q Consensus 334 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~ 381 (1000)
+++.++..+++...+...... -..+....+++.++|.|..+..+..
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp CCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999998776433321 1235677888999999986554433
No 163
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.72 E-value=2.2e-07 Score=102.91 Aligned_cols=249 Identities=19% Similarity=0.140 Sum_probs=142.9
Q ss_pred cccccccchhhHHHhhcccCCCC--CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCcc
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGP--NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIW 264 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 264 (1000)
....++|++..++.+...+.... ....+.|.|+|++|+|||++|+++++.....| .++.. .. ..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~~-~~----------~~ 75 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTSG-PA----------IE 75 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEECT-TT----------CC
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEec-cc----------cC
Confidence 45789999999888887764210 02335688999999999999999998765333 12211 00 00
Q ss_pred chhhhHHHHHHHhc---CCCcEEEecCCCCHH--HHHHHhcCcCCC------------------CCCceEEEEeCCcchh
Q 001889 265 NVDDGINILASRLQ---HKKVLLVIDDVVDIK--QLEYLAGKREWF------------------GSGSKIIITSRDEHLL 321 (1000)
Q Consensus 265 ~~~~~~~~i~~~L~---~k~~LlVLDdv~~~~--~l~~l~~~~~~~------------------~~gsrIIiTTR~~~v~ 321 (1000)
. ...+...+. .++.+|+||+++... ..+.+....... .++.++|.||......
T Consensus 76 ~----~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~ 151 (324)
T 1hqc_A 76 K----PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLI 151 (324)
T ss_dssp S----HHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSC
T ss_pred C----hHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccC
Confidence 1 122233333 366799999997742 333332111100 1245677776643221
Q ss_pred c-c--cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcC---------CCHH
Q 001889 322 K-T--HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFLNG---------RSLD 389 (1000)
Q Consensus 322 ~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L~~---------~~~~ 389 (1000)
. . ......+++.+++.+|..+++...+....... ..+....++++++|.|-.+..+...+.. .+.+
T Consensus 152 ~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~ 229 (324)
T 1hqc_A 152 TAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRE 229 (324)
T ss_dssp SCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHH
T ss_pred CHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 1 1 12235789999999999999988765433221 1356788999999999887766544321 2334
Q ss_pred HHHHHHHHhhcCCCcchhhHHHhhhcCCChhhHHHhhhhhcccCCc--CHHHHHHHHhcCCCCcc---hhhH-Hhhcccc
Q 001889 390 QWKSTLERLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFNLE--DRDYVTKVLDGCDFSPV---IGIE-VLINKSL 463 (1000)
Q Consensus 390 ~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~la~f~~~~--~~~~~~~~~~~~~~~~~---~~l~-~L~~~sL 463 (1000)
....++..+ ......++..++..+..++....+. ....+...+ |.... ..++ .+++.++
T Consensus 230 ~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~l---gi~~~tl~~~l~~~~i~~~l 294 (324)
T 1hqc_A 230 RALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATAL---SEDPGTLEEVHEPYLIRQGL 294 (324)
T ss_dssp HHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHT---TSCHHHHHHHTHHHHHHTTS
T ss_pred HHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHh---CCCHHHHHHHHhHHHHHhcc
Confidence 444443332 2234567777777777666544333 344444333 33221 1122 3777888
Q ss_pred eEEecCC
Q 001889 464 ITILNDN 470 (1000)
Q Consensus 464 i~~~~~~ 470 (1000)
|.....+
T Consensus 295 i~~~~~g 301 (324)
T 1hqc_A 295 LKRTPRG 301 (324)
T ss_dssp EEEETTE
T ss_pred hhcCCcc
Confidence 8766444
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.54 E-value=5.4e-07 Score=99.26 Aligned_cols=181 Identities=14% Similarity=0.158 Sum_probs=112.4
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc-ccce-EEEEechhHhHHhhhccCCc
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM-NLKG-VVFLPMLEKNLKKKLADNSI 263 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~-~~~~~~~~~~~~~~~~~~~~ 263 (1000)
....+++|++..++.+..++..+ ..+.+.|+|++|+|||++|+++++.+.. .+.. .+.+.... ....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~--------~~~~ 82 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK---NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD--------ERGI 82 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT---CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS--------TTCT
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC---CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc--------ccCh
Confidence 34567999999999999998763 2334899999999999999999987632 2111 11121110 0001
Q ss_pred cchhhhHHHHHHH--h-cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcc-hhcc-cCCCceEecCCCC
Q 001889 264 WNVDDGINILASR--L-QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEH-LLKT-HGMDEVYKPSSLN 336 (1000)
Q Consensus 264 ~~~~~~~~~i~~~--L-~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~-~~~~~~~~l~~L~ 336 (1000)
.........+... + .+++.++|+|+++.. ...+.|.........+.++|+||.... +... ......+++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~ 162 (319)
T 2chq_A 83 DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (319)
T ss_dssp TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCC
T ss_pred HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCC
Confidence 1111111111111 1 256789999999763 445666665555556788888887643 1111 1122478999999
Q ss_pred hHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001889 337 YDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVL 379 (1000)
Q Consensus 337 ~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~l 379 (1000)
.++..+++...+......- ..+....+++.++|.+..+...
T Consensus 163 ~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 163 KEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHHHHHHHHHHHHTTCCCB--CHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999987764333221 1245677888889998765443
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=2.1e-07 Score=104.02 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=69.2
Q ss_pred eeeccCC-cccccCCccccCCCCCEEeccCCCCCcccC-cccCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccc
Q 001889 538 ELFLDGT-SITEVPSSIELLTGLQLLNLSDCKDLVRLP-SRINGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGT 615 (1000)
Q Consensus 538 ~L~L~~~-~i~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 615 (1000)
.++++++ .++.+|. |..+++|+.|+|+++..+..+| ..+.+|++|++|+|++|......|..+.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566776 7777887 7778888888887633355555 45777888888888876433333456778888888888888
Q ss_pred cccCCCccccCCCCCcEEEccCCC
Q 001889 616 AIRQPPSSIFLMKNLKELSFRGCK 639 (1000)
Q Consensus 616 ~i~~lp~~i~~L~~L~~L~L~~c~ 639 (1000)
.+..+|..+....+|+.|+|.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 888776654443337777776654
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=2.1e-09 Score=121.33 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=49.3
Q ss_pred CCCCCeeeccCCcccccC-----Cccc-cCCCCCEEeccCCCCCcc-cCcccCCCCCCcEEEeeCCCCCcc----cCccc
Q 001889 533 MEDLSELFLDGTSITEVP-----SSIE-LLTGLQLLNLSDCKDLVR-LPSRINGLKSLKTLCLSGCSELEN----VPENM 601 (1000)
Q Consensus 533 l~~L~~L~L~~~~i~~lp-----~si~-~L~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~----lp~~l 601 (1000)
+++|+.|+|++|.++... ..+. ...+|+.|+|++|..... +......+++|++|+|++|..... +...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 457788888887776321 1122 225677777776652211 111112344566666666532211 11111
Q ss_pred -cCcCCcceeecccccccC-----CCccccCCCCCcEEEccCCC
Q 001889 602 -EKIESLEELDISGTAIRQ-----PPSSIFLMKNLKELSFRGCK 639 (1000)
Q Consensus 602 -~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~c~ 639 (1000)
....+|++|+|++|.+.. ++..+..+++|++|+|++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 123455555555555433 12223334444444444443
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.50 E-value=8.2e-07 Score=100.27 Aligned_cols=189 Identities=15% Similarity=0.086 Sum_probs=112.1
Q ss_pred cccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccce---EEE-EechhHhHHhh-----
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKG---VVF-LPMLEKNLKKK----- 257 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~-~~~~~~~~~~~----- 257 (1000)
....++|++..++.+...+..+ ...+.+.|+|++|+||||+|+++++.+...... .|. ...........
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~--~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 91 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHT--CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCE
T ss_pred chhhccCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceE
Confidence 3457999999999999888643 223578899999999999999999876432210 000 00000000000
Q ss_pred -hccCCccchhhhHHHHHHHh-----cCCCcEEEecCCCC--HHHHHHHhcCcCCCCCCceEEEEeCCcc-hhcc-cCCC
Q 001889 258 -LADNSIWNVDDGINILASRL-----QHKKVLLVIDDVVD--IKQLEYLAGKREWFGSGSKIIITSRDEH-LLKT-HGMD 327 (1000)
Q Consensus 258 -~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~-~~~~ 327 (1000)
.........+ ....+.+.+ .+++.++|+||++. ....+.+.........+..+|++|.+.. +... ....
T Consensus 92 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 170 (373)
T 1jr3_A 92 EIDAASRTKVE-DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (373)
T ss_dssp EEETTCSCCSS-CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTS
T ss_pred EecccccCCHH-HHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhhe
Confidence 0000000111 122333333 24678999999975 3445555544433345677777776533 1111 1123
Q ss_pred ceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001889 328 EVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLG 380 (1000)
Q Consensus 328 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg 380 (1000)
..+++.+++.++..+++...+-...... ..+.+..+++.++|.|..+..+.
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~~~~~~~~--~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHCCCCHHHHHHHH
Confidence 5789999999999999987764332221 12456788999999998776554
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.49 E-value=2.2e-09 Score=121.19 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=84.5
Q ss_pred CCCCCEEeccCCCCCcc----cCcccC-CCCCCcEEEeeCCCCCcc-cCccccCcCCcceeecccccccCCC-cc----c
Q 001889 556 LTGLQLLNLSDCKDLVR----LPSRIN-GLKSLKTLCLSGCSELEN-VPENMEKIESLEELDISGTAIRQPP-SS----I 624 (1000)
Q Consensus 556 L~~L~~L~L~~c~~l~~----lp~~i~-~l~~L~~L~Ls~c~~l~~-lp~~l~~l~~L~~L~L~~~~i~~lp-~~----i 624 (1000)
+++|+.|+|++|..... +...+. ..++|++|+|++|..... +......+++|++|+|++|.+.... .. +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35667777777653211 111121 225677777777543221 1122233456777777777665431 11 1
Q ss_pred -cCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCC---cccccCCCCcCcEEeCCCCC
Q 001889 625 -FLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGA---IPRDIGNLSSLEELYLSKNS 700 (1000)
Q Consensus 625 -~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~---ip~~l~~l~~L~~L~Ls~n~ 700 (1000)
...++|++|+|++|..... ....+...+..+++|++|+|++|.+.+.. ++..+..+++|+.|+|++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~--------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAA--------GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHH--------HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChH--------HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 2346677777777653110 01112223345566777777777664321 23445556677777777777
Q ss_pred Cc-----cccccccCCCCcCEEEEcCCc
Q 001889 701 FV-----SLPATISLLFKLEELELEDCK 723 (1000)
Q Consensus 701 l~-----~lp~~i~~l~~L~~L~L~~c~ 723 (1000)
++ .++..+..+++|+.|+|++|.
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 66 234445566777777777764
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.48 E-value=3.1e-07 Score=102.75 Aligned_cols=105 Identities=22% Similarity=0.216 Sum_probs=85.9
Q ss_pred ccccCCCccccccchhhcCCCCCCeeeccC-CcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCC
Q 001889 514 TLVLSGCSKLMKFPEILRSMEDLSELFLDG-TSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 514 ~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~-~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 591 (1000)
.+++++...+..+|. +..+++|+.|+|++ |.|..+|+ .|+.|++|+.|+|++|......|..+.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 467777657888999 99999999999997 99998884 6999999999999998744444557899999999999995
Q ss_pred CCCcccCccccCcCCcceeecccccccCC
Q 001889 592 SELENVPENMEKIESLEELDISGTAIRQP 620 (1000)
Q Consensus 592 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~l 620 (1000)
.+..+|..+.....|+.|+|.+|.+...
T Consensus 91 -~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 -ALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp -CCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred -ccceeCHHHcccCCceEEEeeCCCccCC
Confidence 5677776544444499999999987654
No 170
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.47 E-value=2.5e-06 Score=97.14 Aligned_cols=188 Identities=12% Similarity=0.157 Sum_probs=107.3
Q ss_pred CCCeeeccCCcccccCC-ccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccC-ccccCcCCcceeec
Q 001889 535 DLSELFLDGTSITEVPS-SIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVP-ENMEKIESLEELDI 612 (1000)
Q Consensus 535 ~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L 612 (1000)
+|+.+.|.. .+..++. .+..|.+|+.++|.++. +..+|.....+.+|+.+.|.. .+..++ ..+.++.+|+.+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEec
Confidence 577777765 5555543 36667777777777643 566665544567777777763 355554 34566777777777
Q ss_pred ccccccCCCccccCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCC----CCcccccCCC
Q 001889 613 SGTAIRQPPSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQE----GAIPRDIGNL 688 (1000)
Q Consensus 613 ~~~~i~~lp~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~----~~ip~~l~~l 688 (1000)
..+ +..++.....-.+|+.+.+..+-.. .-...+.+|++|+.+++.++.+.. ..-+..|..|
T Consensus 234 ~~~-l~~I~~~aF~~~~L~~i~lp~~i~~-------------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c 299 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRESGITTVKLPNGVTN-------------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC 299 (401)
T ss_dssp CTT-CCEECTTTTTTCCCSEEEEETTCCE-------------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred CCC-ccCccccccccCCccEEEeCCCccE-------------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence 653 4444333222266777776432100 001346667777777776654421 0123456667
Q ss_pred CcCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCcCCCccCCC---CCCccEEeeeCC
Q 001889 689 SSLEELYLSKNSFVSLPA-TISLLFKLEELELEDCKRLQSLPQL---PPNIVSVSVNDC 743 (1000)
Q Consensus 689 ~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l---~~~L~~L~~~~C 743 (1000)
++|+.+.|. ++++.++. .+.+|++|+.|.|.+. ++.++.- ..+|+.|.+.+.
T Consensus 300 ~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 300 PKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp TTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCCCEEEECCS
T ss_pred ccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCCCEEEEcCC
Confidence 777777776 34666654 4566777777777542 4444421 026666666654
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.47 E-value=3.2e-07 Score=96.56 Aligned_cols=174 Identities=15% Similarity=0.110 Sum_probs=100.1
Q ss_pred cccccccch---hhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCc
Q 001889 187 VLKKLVGID---SRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSI 263 (1000)
Q Consensus 187 ~~~~~vGr~---~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 263 (1000)
..++|+|.+ ..++.+..+... ...+.+.|+|++|+||||||+++++........+.++.... ....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~-~~~~------- 94 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASG---DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI-HASI------- 94 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHT---CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG-GGGS-------
T ss_pred ChhhccCCCCCHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH-HHHH-------
Confidence 456788733 455666666543 23567899999999999999999988765544455554211 1100
Q ss_pred cchhhhHHHHHHHhcCCCcEEEecCCCCHH--H--HHHHhcCcCCC-CCCc-eEEEEeCCcc---------hhcccCCCc
Q 001889 264 WNVDDGINILASRLQHKKVLLVIDDVVDIK--Q--LEYLAGKREWF-GSGS-KIIITSRDEH---------LLKTHGMDE 328 (1000)
Q Consensus 264 ~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~--~--l~~l~~~~~~~-~~gs-rIIiTTR~~~---------v~~~~~~~~ 328 (1000)
..... +.+ .++.+|||||++... . .+.+....... ..+. ++|+||+... +........
T Consensus 95 --~~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~ 167 (242)
T 3bos_A 95 --STALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGL 167 (242)
T ss_dssp --CGGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSE
T ss_pred --HHHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCc
Confidence 00000 111 356789999996532 1 22222211100 1222 4888877432 111111125
Q ss_pred eEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001889 329 VYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLG 380 (1000)
Q Consensus 329 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg 380 (1000)
.+++++++.++..+++...+....... ..+....+++.++|.+-.+..+.
T Consensus 168 ~i~l~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 168 TYQLQPMMDDEKLAALQRRAAMRGLQL--PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp EEECCCCCGGGHHHHHHHHHHHTTCCC--CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHccCCHHHHHHHH
Confidence 789999999999999988764322211 13556788888998876665443
No 172
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.47 E-value=2.9e-07 Score=92.97 Aligned_cols=146 Identities=12% Similarity=0.143 Sum_probs=83.4
Q ss_pred cccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc-------cceEEEEechhHhHHhhhc
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN-------LKGVVFLPMLEKNLKKKLA 259 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------f~~~~~~~~~~~~~~~~~~ 259 (1000)
....++|++..++++...+.. ...+.+.|+|++|+|||+||+++++.+... ....+++. .......
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--- 92 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR---RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD-MGALVAG--- 92 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS---SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC-HHHHHTT---
T ss_pred cccccccchHHHHHHHHHHhc---CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee-HHHHhcc---
Confidence 346799999999999988865 234568899999999999999999876441 12223332 2221110
Q ss_pred cCCccchhhhHHHHHHHh--cCCCcEEEecCCCCHH-------------HHHHHhcCcCCCCCCceEEEEeCCcchhc--
Q 001889 260 DNSIWNVDDGINILASRL--QHKKVLLVIDDVVDIK-------------QLEYLAGKREWFGSGSKIIITSRDEHLLK-- 322 (1000)
Q Consensus 260 ~~~~~~~~~~~~~i~~~L--~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~~~gsrIIiTTR~~~v~~-- 322 (1000)
.............+.+.+ .+++.+|||||++... .+..+.. ..+..+|+||.......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-----~~~~~~i~~~~~~~~~~~~ 167 (195)
T 1jbk_A 93 AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-----RGELHCVGATTLDEYRQYI 167 (195)
T ss_dssp TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-----TTSCCEEEEECHHHHHHHT
T ss_pred CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-----cCCeEEEEeCCHHHHHHHH
Confidence 000011111122222222 3567899999997642 1222221 23456777776543211
Q ss_pred ----c-cCCCceEecCCCChHHHHHHH
Q 001889 323 ----T-HGMDEVYKPSSLNYDEAFQLF 344 (1000)
Q Consensus 323 ----~-~~~~~~~~l~~L~~~ea~~Lf 344 (1000)
. ...-..+.+..++.++..+++
T Consensus 168 ~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 168 EKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred hcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 1 111125788888888876653
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.46 E-value=7e-07 Score=96.82 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=103.4
Q ss_pred cccccccccchhhHHHhhcccCCC----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhH
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGG----------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNL 254 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 254 (1000)
......++|++..+++|...+... .....+-+.|+|++|+|||+||+++++.....|-.+ . ....
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v---~-~~~~- 87 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRV---V-GSEL- 87 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE---E-GGGG-
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE---e-hHHH-
Confidence 344578999999999888776321 002345689999999999999999998865443221 1 1110
Q ss_pred HhhhccCCccchhhhH-HHHHHHhcCCCcEEEecCCCCH----------------HHHHHHhcCcCC--CCCCceEEEEe
Q 001889 255 KKKLADNSIWNVDDGI-NILASRLQHKKVLLVIDDVVDI----------------KQLEYLAGKREW--FGSGSKIIITS 315 (1000)
Q Consensus 255 ~~~~~~~~~~~~~~~~-~~i~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~--~~~gsrIIiTT 315 (1000)
............ ..+......++.+|+||+++.. ..+..+...... ...+..||.||
T Consensus 88 ----~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 163 (285)
T 3h4m_A 88 ----VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT 163 (285)
T ss_dssp ----CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEEC
T ss_pred ----HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 000111111112 2223333456789999999754 122223222211 13456777788
Q ss_pred CCcchhc-----ccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCC-chHHHH
Q 001889 316 RDEHLLK-----THGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGL-PVALEV 378 (1000)
Q Consensus 316 R~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~Gl-PLAl~~ 378 (1000)
....... .......+.++.++.++..+++...+.......+. ....++..+.|. |-.+..
T Consensus 164 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~---~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 164 NRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV---NLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHHCTTCCHHHHHH
T ss_pred CCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC---CHHHHHHHcCCCCHHHHHH
Confidence 7543322 11233578999999999999998876543322111 134566666663 434443
No 174
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.45 E-value=3.3e-06 Score=93.92 Aligned_cols=262 Identities=18% Similarity=0.143 Sum_probs=143.7
Q ss_pred cccccccchhhHHHhhcccCCC--CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCcc
Q 001889 187 VLKKLVGIDSRLKELRSLIDGG--PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIW 264 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 264 (1000)
....++|++..++.+..++... .....+.|.|+|++|+|||+||+++++.....|-. +... . .
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~---~~~~-~----------~- 91 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKT---TAAP-M----------I- 91 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE---EEGG-G----------C-
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE---ecch-h----------c-
Confidence 4568999999999988877532 01334568999999999999999998876554322 1110 0 0
Q ss_pred chhhhHHHHHHHh--cCCCcEEEecCCCCH--HHHHHHhcCcCCC------------------CCCceEEEEeCCcchhc
Q 001889 265 NVDDGINILASRL--QHKKVLLVIDDVVDI--KQLEYLAGKREWF------------------GSGSKIIITSRDEHLLK 322 (1000)
Q Consensus 265 ~~~~~~~~i~~~L--~~k~~LlVLDdv~~~--~~l~~l~~~~~~~------------------~~gsrIIiTTR~~~v~~ 322 (1000)
.....+...+ ..+..+|+||+++.. ...+.|....... .++.++|.+|.......
T Consensus 92 ---~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~ 168 (338)
T 3pfi_A 92 ---EKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLS 168 (338)
T ss_dssp ---CSHHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSC
T ss_pred ---cchhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccC
Confidence 0111222222 246789999999753 2233332211110 11345666665432211
Q ss_pred -c--cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh------cC---CCHHH
Q 001889 323 -T--HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFL------NG---RSLDQ 390 (1000)
Q Consensus 323 -~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L------~~---~~~~~ 390 (1000)
. ...+..+++.+++.++..+++...+...... -..+..+.+++.+.|.|-.+..+...+ .+ .+.+.
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~ 246 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKR 246 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHH
Confidence 0 1234689999999999999998776433211 123556778888899986554433321 11 13333
Q ss_pred HHHHHHHhhcCCCcchhhHHHhhhcCCChhhHHHhhhhhcccCCc--CHHHHHHHHhcCCCCcchhhH-HhhcccceEEe
Q 001889 391 WKSTLERLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFNLE--DRDYVTKVLDGCDFSPVIGIE-VLINKSLITIL 467 (1000)
Q Consensus 391 w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~la~f~~~~--~~~~~~~~~~~~~~~~~~~l~-~L~~~sLi~~~ 467 (1000)
...++.. +..+...++..+++.+..++-. .+. ....+...+....-.....++ .|++.++|...
T Consensus 247 ~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~ 313 (338)
T 3pfi_A 247 ANEALNS------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERT 313 (338)
T ss_dssp HHHHHHH------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEE
T ss_pred HHHHHHH------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecC
Confidence 3333332 2233345565556666655544 322 244444443211111122244 78889999877
Q ss_pred cCCchhhhHHHHHH
Q 001889 468 NDNTLWMHDLLQEL 481 (1000)
Q Consensus 468 ~~~~~~mHdlv~~~ 481 (1000)
..++.....-+..+
T Consensus 314 ~~g~~~t~~~~~~~ 327 (338)
T 3pfi_A 314 AKGRIASAKSYSAL 327 (338)
T ss_dssp TTEEEECHHHHHHH
T ss_pred CCcccccHHHHHHh
Confidence 65655433333333
No 175
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=4.7e-08 Score=109.49 Aligned_cols=136 Identities=17% Similarity=0.216 Sum_probs=69.1
Q ss_pred cCCCCCCcEEEeeCCCCCcccCccccCcCCcceeecccccccCC-Cccc--cCCCCCcEEEccCCCC--CCCCCCCcccc
Q 001889 577 INGLKSLKTLCLSGCSELENVPENMEKIESLEELDISGTAIRQP-PSSI--FLMKNLKELSFRGCKG--PPSSTSCSWRF 651 (1000)
Q Consensus 577 i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i--~~L~~L~~L~L~~c~~--~~~~~~~~~~~ 651 (1000)
+..+++|+.|+|++|..+ .++. + .+++|++|+|..+.+..- ...+ ..+++|++|+|+.+.. .....
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~------ 238 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD------ 238 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC------
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh------
Confidence 344566666666665322 2332 2 255666666665544321 1112 2466667666643211 00000
Q ss_pred CcccccCCC--CCCCCCCeecCCCCCCCCCCccccc---CCCCcCcEEeCCCCCCcc-----ccccccCCCCcCEEEEcC
Q 001889 652 PFNLMLPSL--SGLCSLTKLDLSDCNIQEGAIPRDI---GNLSSLEELYLSKNSFVS-----LPATISLLFKLEELELED 721 (1000)
Q Consensus 652 p~~~~~~~l--~~l~~L~~L~Ls~~~l~~~~ip~~l---~~l~~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~ 721 (1000)
...+.+.+ ..+++|+.|+|.+|.+.+. .+..+ ..+++|+.|+|+.|.+.. ++..+..+++|+.|+|++
T Consensus 239 -~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~-~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 239 -MNVFRPLFSKDRFPNLKWLGIVDAEEQNV-VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp -GGGTGGGSCTTTCTTCCEEEEESCTTHHH-HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred -HHHHHHHHhcCCCCCcCEEeCCCCCCchH-HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 00011111 3467788888877765421 11111 246778888888777763 455556677777777776
Q ss_pred Cc
Q 001889 722 CK 723 (1000)
Q Consensus 722 c~ 723 (1000)
|.
T Consensus 317 n~ 318 (362)
T 2ra8_A 317 NY 318 (362)
T ss_dssp BB
T ss_pred Cc
Confidence 63
No 176
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.42 E-value=3.2e-06 Score=94.71 Aligned_cols=204 Identities=10% Similarity=0.059 Sum_probs=114.7
Q ss_pred chhHHHHHHHHHHhccCCcccccccccccchhhHHHhhcccCC-----C----CCCCcEEEEEEecCCCChhHHHHHHHH
Q 001889 165 NESEFIRDIVKAISSKIPVKSEVLKKLVGIDSRLKELRSLIDG-----G----PNDDVRMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 165 ~e~~~i~~i~~~i~~~l~~~~~~~~~~vGr~~~l~~l~~~L~~-----~----~~~~~~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
.+..+++.+...+..+. ++.....++|.+..++.|...+.. . .....+.|.|+|++|+|||+||+++++
T Consensus 62 ~~~~~~~~i~~~i~~~~--~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHG--PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SCHHHHHHHHHHTBCCS--CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CChHHHHHHHhhcccCC--CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45566677777665554 233456799999999888776631 0 013356789999999999999999998
Q ss_pred HhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHH-HhcCCCcEEEecCCCCH-------------HHHHHHhcC
Q 001889 236 TISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILAS-RLQHKKVLLVIDDVVDI-------------KQLEYLAGK 301 (1000)
Q Consensus 236 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~L~~k~~LlVLDdv~~~-------------~~l~~l~~~ 301 (1000)
.....| +.+. ..... .............+.. .-..++.+|+||+++.. .....++..
T Consensus 140 ~~~~~~---~~i~-~~~l~-----~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~ 210 (357)
T 3d8b_A 140 QSGATF---FSIS-ASSLT-----SKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQ 210 (357)
T ss_dssp HTTCEE---EEEE-GGGGC-----CSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHH
T ss_pred HcCCeE---EEEe-hHHhh-----ccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHH
Confidence 764332 1222 11110 0001111112222222 22356789999999543 112222222
Q ss_pred cC----CCCCCceEEEEeCCcchhcc---cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCC-c
Q 001889 302 RE----WFGSGSKIIITSRDEHLLKT---HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGL-P 373 (1000)
Q Consensus 302 ~~----~~~~gsrIIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~Gl-P 373 (1000)
+. ....+..||.||.....+.. -.....+.+...+.++..+++...+........ .+....+++.+.|. +
T Consensus 211 l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~ 288 (357)
T 3d8b_A 211 LDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSG 288 (357)
T ss_dssp HHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCH
T ss_pred HhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCH
Confidence 11 11234456667764322111 133457789999999999998877643222111 24567788888884 5
Q ss_pred hHHHHHhh
Q 001889 374 VALEVLGS 381 (1000)
Q Consensus 374 LAl~~lg~ 381 (1000)
-.|..+..
T Consensus 289 ~dl~~l~~ 296 (357)
T 3d8b_A 289 ADMTQLCR 296 (357)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55665544
No 177
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=5.3e-07 Score=100.02 Aligned_cols=171 Identities=14% Similarity=0.132 Sum_probs=120.3
Q ss_pred CCCCCeeeccCCcccccCCc-cccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeC-----------------CCCC
Q 001889 533 MEDLSELFLDGTSITEVPSS-IELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSG-----------------CSEL 594 (1000)
Q Consensus 533 l~~L~~L~L~~~~i~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~-----------------c~~l 594 (1000)
|++|+.|.|.. .++.++.. +..|++|+.|++.++....--+..+..+.+|..+.+.. |..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 88999999988 78877764 78889999999987653322233344444444443322 1111
Q ss_pred c---------ccCcc----------------------------ccCcCCcceeecccccccCCCc-cccCCCCCcEEEcc
Q 001889 595 E---------NVPEN----------------------------MEKIESLEELDISGTAIRQPPS-SIFLMKNLKELSFR 636 (1000)
Q Consensus 595 ~---------~lp~~----------------------------l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~ 636 (1000)
+ .++.. ...+++|+.|+|++|.+..+|. .+..+.+|+.|++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 1 00000 0137899999999999999865 57789999999998
Q ss_pred CCCCCCCCCCCccccCcccccCCCCCCCCCC-eecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCccccc-cccCCCCc
Q 001889 637 GCKGPPSSTSCSWRFPFNLMLPSLSGLCSLT-KLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPA-TISLLFKL 714 (1000)
Q Consensus 637 ~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~-~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L 714 (1000)
.+-.. .-...|.+|.+|+ .|++.. ++.. .-+..|..|++|+.|++++|+++.++. .+.++++|
T Consensus 259 ~ni~~-------------I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 259 HNLKT-------------IGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp TTCCE-------------ECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred cccce-------------ehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 76211 1125688999999 999988 5533 124678899999999999999999987 67899999
Q ss_pred CEEEE
Q 001889 715 EELEL 719 (1000)
Q Consensus 715 ~~L~L 719 (1000)
+.|+.
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 98864
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=2.6e-06 Score=100.40 Aligned_cols=184 Identities=15% Similarity=0.181 Sum_probs=102.5
Q ss_pred ccccccccchhhHHHhhcccCCC--------------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechh
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGG--------------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLE 251 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~--------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~ 251 (1000)
.....++|++..+++|..++... ..+..+.+.|+|++|+||||+|+++++.+. +. .+.+....
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in~s~ 112 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQNASD 112 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEECTTS
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEeCCC
Confidence 34568999999999998887531 001347899999999999999999998873 22 12222110
Q ss_pred --H--hHHhhhcc-CCccchhhhHHHHHH--HhcCCCcEEEecCCCCH--------HHHHHHhcCcCCCCCCceEEEEeC
Q 001889 252 --K--NLKKKLAD-NSIWNVDDGINILAS--RLQHKKVLLVIDDVVDI--------KQLEYLAGKREWFGSGSKIIITSR 316 (1000)
Q Consensus 252 --~--~~~~~~~~-~~~~~~~~~~~~i~~--~L~~k~~LlVLDdv~~~--------~~l~~l~~~~~~~~~gsrIIiTTR 316 (1000)
. ........ ..............+ ...+++.+||||+++.. ..+..+... .+..||+++.
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-----~~~~iIli~~ 187 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-----TSTPLILICN 187 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----CSSCEEEEES
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----cCCCEEEEEc
Confidence 0 00000000 000000000000000 11356789999999653 223333222 2344666655
Q ss_pred Ccc---hhcccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCc-hHHHHH
Q 001889 317 DEH---LLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLP-VALEVL 379 (1000)
Q Consensus 317 ~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlP-LAl~~l 379 (1000)
+.. +.........+++++++.++..+++...+.......+ .+....|++.++|.+ -++..+
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 432 2222223457899999999999999877654332211 134677888898854 445444
No 179
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.38 E-value=1e-05 Score=92.11 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=43.7
Q ss_pred hcCCCCCCeeeccCCcccccCCccccCCCCCEEeccCCCCCcccCc-ccCCCCCCcEEEeeCCCCCcccCcc-ccCcCCc
Q 001889 530 LRSMEDLSELFLDGTSITEVPSSIELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKTLCLSGCSELENVPEN-MEKIESL 607 (1000)
Q Consensus 530 ~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L 607 (1000)
|.+|++|+.++|.++.+..++.....+.+|+.+.|.++ +..++. .+.++++|+.+.+.. .+..++.. +.+ .+|
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGI 250 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCC
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCc
Confidence 44455555555555555544444333445555555422 333332 234444555555543 23333322 222 345
Q ss_pred ceeecccccccCC-CccccCCCCCcEEEccCC
Q 001889 608 EELDISGTAIRQP-PSSIFLMKNLKELSFRGC 638 (1000)
Q Consensus 608 ~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c 638 (1000)
+.+.+. +.+..+ ...+..+++|+.+.+.++
T Consensus 251 ~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 251 TTVKLP-NGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp SEEEEE-TTCCEECTTTTTTCTTCCEEEEESS
T ss_pred cEEEeC-CCccEEChhHhhCCCCCCEEEeCCc
Confidence 555442 223333 223344455555554443
No 180
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=4.5e-08 Score=109.64 Aligned_cols=162 Identities=14% Similarity=0.172 Sum_probs=101.5
Q ss_pred hhcCCCCCCeeeccCCccc----------ccCCccccCCCCCEEeccCCCCCcccCcccCCCCCCcEEEeeCCCCCcccC
Q 001889 529 ILRSMEDLSELFLDGTSIT----------EVPSSIELLTGLQLLNLSDCKDLVRLPSRINGLKSLKTLCLSGCSELENVP 598 (1000)
Q Consensus 529 ~~~~l~~L~~L~L~~~~i~----------~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 598 (1000)
...++++|+.|.+.+.... .+...+..+++|+.|+|++|..+ .+|. + .+++|++|+|..|.......
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 3445678888877653221 23344566788999999887433 3444 4 47889999998765322222
Q ss_pred ccc--cCcCCcceeecccc--c------ccCCCccc--cCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCC
Q 001889 599 ENM--EKIESLEELDISGT--A------IRQPPSSI--FLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSL 666 (1000)
Q Consensus 599 ~~l--~~l~~L~~L~L~~~--~------i~~lp~~i--~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L 666 (1000)
..+ ..+++|++|+|+.+ . +..+...+ ..+++|++|+|.+|...... ...+ .....+++|
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~--------~~~l-a~a~~~~~L 281 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV--------VEMF-LESDILPQL 281 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH--------HHHH-HHCSSGGGC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH--------HHHH-HhCccCCCC
Confidence 233 36888999988531 1 22221122 35789999999888642110 0000 111356899
Q ss_pred CeecCCCCCCCCC---CcccccCCCCcCcEEeCCCCCCc
Q 001889 667 TKLDLSDCNIQEG---AIPRDIGNLSSLEELYLSKNSFV 702 (1000)
Q Consensus 667 ~~L~Ls~~~l~~~---~ip~~l~~l~~L~~L~Ls~n~l~ 702 (1000)
++|+|+.|.+.+. .++..+.++++|+.|+|++|.++
T Consensus 282 ~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 9999999987652 24555567899999999999776
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.35 E-value=8.9e-06 Score=89.74 Aligned_cols=184 Identities=13% Similarity=0.092 Sum_probs=104.4
Q ss_pred ccccccccchhhHHHhhcccC---------CCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 186 EVLKKLVGIDSRLKELRSLID---------GGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~---------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
.....++|.+..++.|...+. .......+-|.|+|++|+|||+||+++++.....|-. + +.......
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~---v-~~~~l~~~ 90 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS---V-SSSDLVSK 90 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEE---E-EHHHHHTT
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEE---E-chHHHhhc
Confidence 345689999999888877661 1111234678999999999999999999886544322 1 11111110
Q ss_pred hhccCCccchhhhHHHHH-HHhcCCCcEEEecCCCCHH-------------HHHHHhcCcC---CCCCCceEEEEeCCcc
Q 001889 257 KLADNSIWNVDDGINILA-SRLQHKKVLLVIDDVVDIK-------------QLEYLAGKRE---WFGSGSKIIITSRDEH 319 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~-~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~---~~~~gsrIIiTTR~~~ 319 (1000)
...........+. ..-..++.+|+||+++... ....+..... ....+..||.||....
T Consensus 91 -----~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 91 -----WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 165 (322)
T ss_dssp -----TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG
T ss_pred -----ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh
Confidence 1111122222222 2234567899999997531 1222222211 1234556666776543
Q ss_pred hhcc---cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCC-chHHHHHh
Q 001889 320 LLKT---HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGL-PVALEVLG 380 (1000)
Q Consensus 320 v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~Gl-PLAl~~lg 380 (1000)
.+.. -..+..+.++..+.++..+++..++........ ......+++.+.|. +-.|..+.
T Consensus 166 ~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 166 QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 2211 123457788999999999999887754332211 23456677777764 44444443
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.34 E-value=2.7e-06 Score=91.46 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=79.1
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCC
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVV 290 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~ 290 (1000)
...+.+.|+|++|+|||+||+++++.....|-. +....... ..............+......+..+|+||+++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~---i~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid 134 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK---ICSPDKMI----GFSETAKCQAMKKIFDDAYKSQLSCVVVDDIE 134 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE---EECGGGCT----TCCHHHHHHHHHHHHHHHHTSSEEEEEECCHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEE---EeCHHHhc----CCchHHHHHHHHHHHHHHHhcCCcEEEEEChh
Confidence 456789999999999999999999875433221 11111000 00000000111222333334568899999986
Q ss_pred CH------------HHHHHH---hcCcCCCCCCceEEEEeCCcchhcc----cCCCceEecCCCCh-HHHHHHHHHhhcc
Q 001889 291 DI------------KQLEYL---AGKREWFGSGSKIIITSRDEHLLKT----HGMDEVYKPSSLNY-DEAFQLFNMKAFK 350 (1000)
Q Consensus 291 ~~------------~~l~~l---~~~~~~~~~gsrIIiTTR~~~v~~~----~~~~~~~~l~~L~~-~ea~~Lf~~~a~~ 350 (1000)
.. ..++.+ .......+....||.||.....+.. -.....+++++++. ++..+++....
T Consensus 135 ~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-- 212 (272)
T 1d2n_A 135 RLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-- 212 (272)
T ss_dssp HHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT--
T ss_pred hhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC--
Confidence 53 123333 2222112334456777776643322 12245788998988 55555554321
Q ss_pred cCCCChhHHHHHHHHHHHhCCC
Q 001889 351 SQQPSEECVQLSERVLQYAGGL 372 (1000)
Q Consensus 351 ~~~~~~~~~~l~~~iv~~~~Gl 372 (1000)
... .+....+++.+.|.
T Consensus 213 --~~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 213 --NFK---DKERTTIAQQVKGK 229 (272)
T ss_dssp --CSC---HHHHHHHHHHHTTS
T ss_pred --CCC---HHHHHHHHHHhcCC
Confidence 111 24466778888774
No 183
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.32 E-value=6e-06 Score=89.99 Aligned_cols=197 Identities=16% Similarity=0.132 Sum_probs=107.9
Q ss_pred HHHHHhccC--CcccccccccccchhhHHHhhcccCCC---------CCCCcEEEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 173 IVKAISSKI--PVKSEVLKKLVGIDSRLKELRSLIDGG---------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 173 i~~~i~~~l--~~~~~~~~~~vGr~~~l~~l~~~L~~~---------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
+++.+...+ ..++.....++|.+..++.|...+... .....+.+.|+|++|+||||+|+++++.....|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 344444444 233445678999999998887765310 002346789999999999999999998764433
Q ss_pred ceEEEEechhHhHHhhhccCCccchhhhHHH-HHHHhcCCCcEEEecCCCCH-------------HHHHHHhcCcCC---
Q 001889 242 KGVVFLPMLEKNLKKKLADNSIWNVDDGINI-LASRLQHKKVLLVIDDVVDI-------------KQLEYLAGKREW--- 304 (1000)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~L~~k~~LlVLDdv~~~-------------~~l~~l~~~~~~--- 304 (1000)
- .+. .... .............. +......++.+|+||+++.. .....+......
T Consensus 83 ~---~i~-~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 83 L---NIS-AASL-----TSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp E---EEE-STTT-----SSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred E---Eee-HHHH-----hhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 2 111 1110 00001111122222 22223457789999999653 111122211111
Q ss_pred --CCCCceEEEEeCCcchhcc---cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch-HHHH
Q 001889 305 --FGSGSKIIITSRDEHLLKT---HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV-ALEV 378 (1000)
Q Consensus 305 --~~~gsrIIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL-Al~~ 378 (1000)
.+.+..||.||.....+.. -.....+.+...+.++..+++...+.....+.. .+....+++.+.|.+- ++..
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHH
Confidence 1234556677775432111 023356788888888888888776643322211 2456678888888875 5544
Q ss_pred Hh
Q 001889 379 LG 380 (1000)
Q Consensus 379 lg 380 (1000)
+.
T Consensus 232 l~ 233 (297)
T 3b9p_A 232 LA 233 (297)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 184
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.29 E-value=5.7e-06 Score=88.25 Aligned_cols=183 Identities=13% Similarity=0.148 Sum_probs=97.9
Q ss_pred ccccccchhhHHHhhcccC---CC------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhh
Q 001889 188 LKKLVGIDSRLKELRSLID---GG------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKL 258 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~---~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 258 (1000)
..+++|.+...+.+..++. .. .....+-+.|+|++|+|||++|+++++.....|- .+. .....
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~---~~~-~~~~~---- 76 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFL---AMA-GAEFV---- 76 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE---EEE-TTTTS----
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-hHHHH----
Confidence 4568888888777755432 10 0023456889999999999999999987754332 121 11100
Q ss_pred ccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHH-----------------HHHHHhcCcCCC--CCCceEEEEeCCcc
Q 001889 259 ADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIK-----------------QLEYLAGKREWF--GSGSKIIITSRDEH 319 (1000)
Q Consensus 259 ~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~-----------------~l~~l~~~~~~~--~~gsrIIiTTR~~~ 319 (1000)
..............+.......+.+|+||+++... .+..+....... ..+..||.||....
T Consensus 77 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 77 EVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 156 (262)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred hhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChh
Confidence 00000011111222333334567899999998651 122333222211 23456666776543
Q ss_pred hh-----cccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 001889 320 LL-----KTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV-ALEVL 379 (1000)
Q Consensus 320 v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL-Al~~l 379 (1000)
.+ .....+..+.++.++.++..+++...+....... ........+++.+.|.+- .|..+
T Consensus 157 ~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 157 ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCHHHHHHH
Confidence 21 1113346788999999999999987764333221 112234667777777654 44333
No 185
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.28 E-value=1.5e-05 Score=89.21 Aligned_cols=184 Identities=12% Similarity=0.091 Sum_probs=102.5
Q ss_pred ccccccccchhhHHHhhcccCC---------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 186 EVLKKLVGIDSRLKELRSLIDG---------GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~---------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
.....++|.+..++.|...+.. ......+-|.|+|++|+|||+||+++++.....|-. + .......
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~---v-~~~~l~~- 122 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS---V-SSSDLVS- 122 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEE---E-EHHHHHS-
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-eHHHHhh-
Confidence 3456799999988888765521 111223468899999999999999999987543321 1 1111111
Q ss_pred hhccCCccchhhhHHHHHH-HhcCCCcEEEecCCCCHH-------------HHHHHhcCcCC---CCCCceEEEEeCCcc
Q 001889 257 KLADNSIWNVDDGINILAS-RLQHKKVLLVIDDVVDIK-------------QLEYLAGKREW---FGSGSKIIITSRDEH 319 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~-~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~---~~~gsrIIiTTR~~~ 319 (1000)
............+.. ....++.+|+||+++... ....++..... ...+..||.||....
T Consensus 123 ----~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 123 ----KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp ----CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred ----hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 001111222222222 224578899999997532 12223222211 123455666776442
Q ss_pred hhcc---cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCC-chHHHHHh
Q 001889 320 LLKT---HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGL-PVALEVLG 380 (1000)
Q Consensus 320 v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~Gl-PLAl~~lg 380 (1000)
.+.. -..+..+.+...+.++..+++..++........ ......|++.+.|. +-.|..+.
T Consensus 199 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 199 QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 2110 134567889999999999999887643322111 23456777788774 44454443
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=4e-06 Score=93.91 Aligned_cols=190 Identities=13% Similarity=0.066 Sum_probs=104.8
Q ss_pred cccccccccchhhHHHhhccc-CCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEech--hHhH--Hh---
Q 001889 185 SEVLKKLVGIDSRLKELRSLI-DGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPML--EKNL--KK--- 256 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L-~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~--~~--- 256 (1000)
|.....++|.+..++.+..++ ..+. ... +.|+|+.|+||||+|+.++..+...-.+.+++... .... ..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~--~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD--LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC--CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC--CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 344577999999999999988 5432 223 89999999999999999998653322221111100 0000 00
Q ss_pred ---h-----h--ccCCccchhhhHHHHHHHh--------------cCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCce
Q 001889 257 ---K-----L--ADNSIWNVDDGINILASRL--------------QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSK 310 (1000)
Q Consensus 257 ---~-----~--~~~~~~~~~~~~~~i~~~L--------------~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsr 310 (1000)
+ . ............+.+.+.. .+++-++|||+++..+ ..+.+.........+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEE
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCE
Confidence 0 0 0000000001112222221 2356699999997632 23333333322345678
Q ss_pred EEEEeCCcc-hhcc-cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHH
Q 001889 311 IIITSRDEH-LLKT-HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEV 378 (1000)
Q Consensus 311 IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~ 378 (1000)
+|++|.+.. +... ......+++.+++.++..+.+...+......-+ ..+.+..|++.++|.+-.+..
T Consensus 167 ~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 167 LIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp EEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHHHH
T ss_pred EEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHHHH
Confidence 888887632 2111 112257899999999999999887643322111 024567888899998765443
No 187
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.21 E-value=2.4e-06 Score=98.36 Aligned_cols=181 Identities=19% Similarity=0.153 Sum_probs=100.5
Q ss_pred ccccc-cchhhH--HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccce--EEEEechhHhHHhhhccCC
Q 001889 188 LKKLV-GIDSRL--KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKG--VVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 188 ~~~~v-Gr~~~l--~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 262 (1000)
.++|| |..... ..+........ . ...+.|+|++|+||||||+++++.+...+.. ++++... ...........
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~-~~~~~~~~~~~ 180 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPG-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-KFLNDLVDSMK 180 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTT-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH-HHHHHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCC-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-HHHHHHHHHHH
Confidence 45566 644433 23333332221 2 5678999999999999999999987665432 3444321 11111000000
Q ss_pred ccchhhhHHHHHHHhcCCCcEEEecCCCCHH----HHHHHhcCcCC-CCCCceEEEEeCCc---------chhcccCCCc
Q 001889 263 IWNVDDGINILASRLQHKKVLLVIDDVVDIK----QLEYLAGKREW-FGSGSKIIITSRDE---------HLLKTHGMDE 328 (1000)
Q Consensus 263 ~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~ 328 (1000)
......+.+.+..+.-+|+|||++... ..+.+...+.. ...|..||+||.+. .+...+....
T Consensus 181 ----~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~ 256 (440)
T 2z4s_A 181 ----EGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGL 256 (440)
T ss_dssp ----TTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSB
T ss_pred ----cccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCe
Confidence 001223444444467899999996432 22333222111 13567899988862 1222222235
Q ss_pred eEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHH
Q 001889 329 VYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALE 377 (1000)
Q Consensus 329 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~ 377 (1000)
++.+++++.++..+++...+......-+ .+....|++.++|.+-.+.
T Consensus 257 ~i~l~~p~~e~r~~iL~~~~~~~~~~i~--~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 257 VAKLEPPDEETRKSIARKMLEIEHGELP--EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp CCBCCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHCCSCHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHH
Confidence 7889999999999999887643221111 1345667778888875544
No 188
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=6.2e-06 Score=92.19 Aligned_cols=181 Identities=13% Similarity=0.151 Sum_probs=106.0
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc--cce-EEEEechhHhHHhhhccCC
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN--LKG-VVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~-~~~~~~~~~~~~~~~~~~~ 262 (1000)
.....++|++..++.+...+..+. ...+.|+|++|+||||+|+++++.+... +.. ...+..... ..
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~--------~~ 102 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSAN---LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE--------RG 102 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTT---CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC--------CC
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCC---CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc--------cc
Confidence 345679999999999999887542 2238999999999999999999876421 211 111211000 00
Q ss_pred ccchhhhHHHHHH-------------HhcCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcc-hhccc-C
Q 001889 263 IWNVDDGINILAS-------------RLQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEH-LLKTH-G 325 (1000)
Q Consensus 263 ~~~~~~~~~~i~~-------------~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~ 325 (1000)
.....+....+.. .-..++-+|++|+++.. ...+.+...........++|++|.... +.... .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 103 ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 0001111111111 01234569999999753 333444433333345667777776532 11110 1
Q ss_pred CCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001889 326 MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVL 379 (1000)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~l 379 (1000)
....+++.+++.++..+.+...+......-+ .+..+.++++++|.|-.+..+
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENVKCD--DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHTSSCHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 1137889999999999999877643332211 356788999999998765443
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.15 E-value=5.2e-05 Score=83.48 Aligned_cols=184 Identities=11% Similarity=0.105 Sum_probs=101.3
Q ss_pred cccccccchhhHHHhhcccC---------CCCCCCcEEEEEEecCCCChhHHHHHHHHHh-hcccceEEEEechhHhHHh
Q 001889 187 VLKKLVGIDSRLKELRSLID---------GGPNDDVRMIGICGMGGLGKTTLARVVYDTI-SMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~---------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~f~~~~~~~~~~~~~~~ 256 (1000)
....++|.+...+.|...+. .+.....+-|.|+|++|+|||+||+++++.. ...| +.+. ..+..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~-- 83 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLV-- 83 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSC--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHH--
Confidence 34678888888777765431 1111234678999999999999999999876 2222 1111 11000
Q ss_pred hhccCCccchhhhHHHHHHH-hcCCCcEEEecCCCCHH-------------HHHHHhcCcCC---CCCCceEEEEeCCcc
Q 001889 257 KLADNSIWNVDDGINILASR-LQHKKVLLVIDDVVDIK-------------QLEYLAGKREW---FGSGSKIIITSRDEH 319 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~---~~~gsrIIiTTR~~~ 319 (1000)
.......+.....+.+. -..++.+|+||+++... ....+...... ...+..||.||....
T Consensus 84 ---~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 ---SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp ---CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred ---hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 00011112222222222 24578899999998651 12223222221 123445565665432
Q ss_pred hhcc---cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCC-chHHHHHhh
Q 001889 320 LLKT---HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGL-PVALEVLGS 381 (1000)
Q Consensus 320 v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~Gl-PLAl~~lg~ 381 (1000)
.... -..+..+.++..+.++..+++..++........ ......+++.+.|. +-.|..+..
T Consensus 161 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 161 VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2111 134567889999999999999877643222111 23456777788776 434554443
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.15 E-value=3.4e-06 Score=84.56 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=41.4
Q ss_pred cccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
....++|++.+++.+...+.. ...+.+.|+|++|+||||||+++++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~---~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR---RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS---SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC---CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346799999999999988865 23456789999999999999999987644
No 191
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.14 E-value=1.4e-05 Score=87.66 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=86.7
Q ss_pred ccccchhhHHHhhcccCC------------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccc----eEEEEechhHh
Q 001889 190 KLVGIDSRLKELRSLIDG------------GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLK----GVVFLPMLEKN 253 (1000)
Q Consensus 190 ~~vGr~~~l~~l~~~L~~------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~----~~~~~~~~~~~ 253 (1000)
.++|.+...+.|..++.. ........+.|+|++|+|||++|+++++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 477777777666544321 11134457899999999999999999987644221 222222 1111
Q ss_pred HHhhhccCCccchhhhHHHHHHHhc-CCCcEEEecCCC-----------CHHHHHHHhcCcCCCCCCceEEEEeCCc---
Q 001889 254 LKKKLADNSIWNVDDGINILASRLQ-HKKVLLVIDDVV-----------DIKQLEYLAGKREWFGSGSKIIITSRDE--- 318 (1000)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~i~~~L~-~k~~LlVLDdv~-----------~~~~l~~l~~~~~~~~~gsrIIiTTR~~--- 318 (1000)
........ ...+...+. .+.-+|+||+++ +...+..|.........+..||.||...
T Consensus 111 -----~~~~~g~~---~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~ 182 (309)
T 3syl_A 111 -----VGQYIGHT---APKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRME 182 (309)
T ss_dssp -----CCSSTTCH---HHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHH
T ss_pred -----hhhccccc---HHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHH
Confidence 00001111 111222221 245699999998 3344555554444334566788888642
Q ss_pred -------chhcccCCCceEecCCCChHHHHHHHHHhhcc
Q 001889 319 -------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFK 350 (1000)
Q Consensus 319 -------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 350 (1000)
.+... ....+.+++++.++..+++...+..
T Consensus 183 ~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 183 NFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp HHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 22222 2357899999999999999877643
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.13 E-value=3.3e-05 Score=87.63 Aligned_cols=185 Identities=15% Similarity=0.107 Sum_probs=101.4
Q ss_pred cccccccccchhhHHHhhcccCC---------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHH
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDG---------GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLK 255 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~---------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 255 (1000)
+.....++|.+..++.|...+.. ......+-|.|+|++|+|||+||+++++.....|- .+. ......
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~---~v~-~~~l~~ 186 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF---NIS-AASLTS 186 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE---EEC-SCCC--
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEE---Eee-HHHhhc
Confidence 34467899999999988876621 00022467899999999999999999887544331 111 111000
Q ss_pred hhhccCCccchhhhHHHH-HHHhcCCCcEEEecCCCCH-------------HHHHHHhcCcC----CCCCCceEEEEeCC
Q 001889 256 KKLADNSIWNVDDGINIL-ASRLQHKKVLLVIDDVVDI-------------KQLEYLAGKRE----WFGSGSKIIITSRD 317 (1000)
Q Consensus 256 ~~~~~~~~~~~~~~~~~i-~~~L~~k~~LlVLDdv~~~-------------~~l~~l~~~~~----~~~~gsrIIiTTR~ 317 (1000)
. ...........+ ...-...+.+|+||+++.. .....+..... .......||.||..
T Consensus 187 ~-----~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 187 K-----YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp ----------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred c-----ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 0 000111122222 2222346679999999754 11122221111 11233455666654
Q ss_pred cchhcc---cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch-HHHHHh
Q 001889 318 EHLLKT---HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV-ALEVLG 380 (1000)
Q Consensus 318 ~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL-Al~~lg 380 (1000)
...+.. -.....+.+...+.++..+++...+-....... .+....+++.+.|..- ++..+.
T Consensus 262 ~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 262 PQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp GGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred chhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 322111 123356889999999999999877644322221 2356678888887644 555544
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.10 E-value=3.8e-05 Score=88.56 Aligned_cols=185 Identities=12% Similarity=0.125 Sum_probs=104.4
Q ss_pred cccccccccchhhHHHhhcccCC---------CCCCCcEEEEEEecCCCChhHHHHHHHHHh-hcccceEEEEechhHhH
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDG---------GPNDDVRMIGICGMGGLGKTTLARVVYDTI-SMNLKGVVFLPMLEKNL 254 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~---------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~f~~~~~~~~~~~~~ 254 (1000)
......++|.+...+.|...+.. ......+-|.|+|++|+|||+||+++++.. ...| +.+. .....
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~---~~v~-~~~l~ 205 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLV 205 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEE---EEEC-CC---
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCE---EEEe-HHHHH
Confidence 34557899999988888765521 101234678999999999999999999876 2222 1111 11111
Q ss_pred HhhhccCCccchhhhHHHHHH-HhcCCCcEEEecCCCCH-------------HHHHHHhcCcCCC---CCCceEEEEeCC
Q 001889 255 KKKLADNSIWNVDDGINILAS-RLQHKKVLLVIDDVVDI-------------KQLEYLAGKREWF---GSGSKIIITSRD 317 (1000)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~i~~-~L~~k~~LlVLDdv~~~-------------~~l~~l~~~~~~~---~~gsrIIiTTR~ 317 (1000)
... ..........+.+ .-..++.+|+||+++.. .....++...... ..+..||.||..
T Consensus 206 ~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 206 SKW-----LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp -----------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred hhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 100 0011112222222 22457889999999864 2234454444332 345566667765
Q ss_pred cchhcc---cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCC-chHHHHHh
Q 001889 318 EHLLKT---HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGL-PVALEVLG 380 (1000)
Q Consensus 318 ~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~Gl-PLAl~~lg 380 (1000)
...+.. -..+..+.++..+.++..++|..++........ ......|++.+.|. +-.|..+.
T Consensus 281 ~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 281 PWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT--EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp GGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 432211 134457888888999999999887643221111 23456777788774 43444443
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.10 E-value=7.9e-06 Score=90.31 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=93.5
Q ss_pred ccccc-cchhh--HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCcc
Q 001889 188 LKKLV-GIDSR--LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIW 264 (1000)
Q Consensus 188 ~~~~v-Gr~~~--l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 264 (1000)
.++|| |.... ...+..++.... .....+.|+|++|+||||||+++++.+...-...+++.. ............
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~-~~~~~~~~~~~~-- 85 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA-DDFAQAMVEHLK-- 85 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHHHHHHHHH--
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH-HHHHHHHHHHHH--
Confidence 44565 53332 233444443322 234578999999999999999999977543223344432 111111000000
Q ss_pred chhhhHHHHHHHhcCCCcEEEecCCCCHH----HHHHHhcCcC-CCCCCceEEEEeCCcc---------hhcccCCCceE
Q 001889 265 NVDDGINILASRLQHKKVLLVIDDVVDIK----QLEYLAGKRE-WFGSGSKIIITSRDEH---------LLKTHGMDEVY 330 (1000)
Q Consensus 265 ~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----~l~~l~~~~~-~~~~gsrIIiTTR~~~---------v~~~~~~~~~~ 330 (1000)
......+.+.+. +..+|+|||++... ..+.+..... ....|.+||+||.... +...+....++
T Consensus 86 --~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 86 --KGTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILV 162 (324)
T ss_dssp --HTCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE
T ss_pred --cCcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEE
Confidence 011122233333 36799999996532 1222222111 1134567888886421 12222223578
Q ss_pred ecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCch
Q 001889 331 KPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPV 374 (1000)
Q Consensus 331 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPL 374 (1000)
++++ +.++..+++...+......-+ .+....+++++ |..-
T Consensus 163 ~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 163 EIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVR 202 (324)
T ss_dssp ECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHH
T ss_pred EeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHH
Confidence 9999 999999999887753332211 24566777777 6654
No 195
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.09 E-value=1.4e-05 Score=88.26 Aligned_cols=169 Identities=14% Similarity=0.130 Sum_probs=100.1
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccc
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWN 265 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1000)
...++++|.+..++.+..++..+ ....++.+.|++|+|||++|+++++.+...| +.+.... . .
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~--~~~~~~L~~G~~G~GKT~la~~la~~l~~~~---~~i~~~~---------~---~ 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKG--KIPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVNGSD---------C---K 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTT--CCCSEEEECSSTTSSHHHHHHHHHHHTTEEE---EEEETTT---------C---C
T ss_pred CCHHHHhCcHHHHHHHHHHHHcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCE---EEEcccc---------c---C
Confidence 34578999999999999988753 2335778889999999999999998774322 2222110 0 0
Q ss_pred hhhhHHHHHHHhc-----CCCcEEEecCCCCHH---HHHHHhcCcCCCCCCceEEEEeCCcc-----hhcccCCCceEec
Q 001889 266 VDDGINILASRLQ-----HKKVLLVIDDVVDIK---QLEYLAGKREWFGSGSKIIITSRDEH-----LLKTHGMDEVYKP 332 (1000)
Q Consensus 266 ~~~~~~~i~~~L~-----~k~~LlVLDdv~~~~---~l~~l~~~~~~~~~gsrIIiTTR~~~-----v~~~~~~~~~~~l 332 (1000)
.+.....+.+... +++-++|+|+++... ..+.|.........+.++|+||.... +...+ ..+++
T Consensus 86 ~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~ 162 (324)
T 3u61_B 86 IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITF 162 (324)
T ss_dssp HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEEC
T ss_pred HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEe
Confidence 1111222222222 367899999998754 34444433332235678888887643 22221 47899
Q ss_pred CCCChHHHHHHH-------HHhhcccCCCChhHHHHHHHHHHHhCCCchH
Q 001889 333 SSLNYDEAFQLF-------NMKAFKSQQPSEECVQLSERVLQYAGGLPVA 375 (1000)
Q Consensus 333 ~~L~~~ea~~Lf-------~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLA 375 (1000)
++++.++..+++ ...+.......+. .+....+++.++|.+-.
T Consensus 163 ~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 163 GQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHH
Confidence 999988854333 2222211111100 24567788888877654
No 196
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.07 E-value=1e-05 Score=93.05 Aligned_cols=176 Identities=19% Similarity=0.203 Sum_probs=101.4
Q ss_pred ccccccccchhhH---HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCC
Q 001889 186 EVLKKLVGIDSRL---KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 186 ~~~~~~vGr~~~l---~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 262 (1000)
.....+||.+..+ ..|...+.. +..+.+.|+|++|+||||||+.+++.....|... .... ..
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~---~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l---~a~~---------~~ 87 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA---GHLHSMILWGPPGTGKTTLAEVIARYANADVERI---SAVT---------SG 87 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH---TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE---ETTT---------CC
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc---CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE---Eecc---------CC
Confidence 3456799999888 566666654 3346799999999999999999998875554322 1110 00
Q ss_pred ccchhhhHHHHHH-HhcCCCcEEEecCCCCHH--HHHHHhcCcCCCCCCceEEE-EeCCcc--hhcc-cCCCceEecCCC
Q 001889 263 IWNVDDGINILAS-RLQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSKIII-TSRDEH--LLKT-HGMDEVYKPSSL 335 (1000)
Q Consensus 263 ~~~~~~~~~~i~~-~L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIi-TTR~~~--v~~~-~~~~~~~~l~~L 335 (1000)
..+.......... ...+++.+|+||+++... +.+.|...... ....+|. ||.+.. +... .....++.+.++
T Consensus 88 ~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l 165 (447)
T 3pvs_A 88 VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSL 165 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCC
T ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCc
Confidence 1111112222211 124678899999997643 33333333321 2233443 555432 1111 122347889999
Q ss_pred ChHHHHHHHHHhhcccC-----CCChhHHHHHHHHHHHhCCCchHHHH
Q 001889 336 NYDEAFQLFNMKAFKSQ-----QPSEECVQLSERVLQYAGGLPVALEV 378 (1000)
Q Consensus 336 ~~~ea~~Lf~~~a~~~~-----~~~~~~~~l~~~iv~~~~GlPLAl~~ 378 (1000)
+.++..+++...+-... ....-..+..+.++++++|.+-.+..
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 99999999987764311 11111235677788889998765443
No 197
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.03 E-value=8.3e-05 Score=81.06 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=89.5
Q ss_pred cccccccchhhHHHhhcccCCC----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 187 VLKKLVGIDSRLKELRSLIDGG----------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
....++|.+..+++|...+... .-...+.|.|+|++|+|||+||+++++.....| +.+. .......
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-~~~l~~~ 88 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-GPELLTM 88 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC-HHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE-hHHHHhh
Confidence 3457889998888877655320 002345789999999999999999998765332 2222 2221111
Q ss_pred hhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHHH----------------HHHHhcCcCCC--CCCceEEEEeCCc
Q 001889 257 KLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIKQ----------------LEYLAGKREWF--GSGSKIIITSRDE 318 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~----------------l~~l~~~~~~~--~~gsrIIiTTR~~ 318 (1000)
.... ........+.......+.+|+||+++.... ...++...... ..+..||.||...
T Consensus 89 ~~g~----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 89 WFGE----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp HHTT----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred hcCc----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 1100 011122233333346788999999985321 12222222111 2345677777654
Q ss_pred chh-----cccCCCceEecCCCChHHHHHHHHHhhc
Q 001889 319 HLL-----KTHGMDEVYKPSSLNYDEAFQLFNMKAF 349 (1000)
Q Consensus 319 ~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 349 (1000)
..+ .....+..+.++..+.++-.+++..+.-
T Consensus 165 ~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 165 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred cccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 322 2113446789999999999998877663
No 198
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.98 E-value=4.7e-05 Score=85.62 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=39.3
Q ss_pred ccccccchhhHHHhh---cccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 188 LKKLVGIDSRLKELR---SLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~---~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
...+||++...+.+. ..+..+. ...+.+.|+|++|+|||++|+++++.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK-IAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC-CTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 568999999877644 3333322 223689999999999999999999987643
No 199
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.94 E-value=2.5e-05 Score=84.92 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=88.6
Q ss_pred cccccchhhHHHhhcccCCC-CCCCcEEEEEEecCCCChhHHHHHHHHHhhccc-----c--eEEEEechhHh-----H-
Q 001889 189 KKLVGIDSRLKELRSLIDGG-PNDDVRMIGICGMGGLGKTTLARVVYDTISMNL-----K--GVVFLPMLEKN-----L- 254 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~--~~~~~~~~~~~-----~- 254 (1000)
..+.||+++++++...|... ..+....+.|+|++|+|||++|+++++.+.... . ..+++...... .
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 34889999999988766531 014556789999999999999999999875421 1 23344422211 1
Q ss_pred --HhhhccCC--ccchhhhHHHHHHHh---cCCCcEEEecCCCCHHHHHHHhcCcCCC-CCCce--EEEEeCCcch----
Q 001889 255 --KKKLADNS--IWNVDDGINILASRL---QHKKVLLVIDDVVDIKQLEYLAGKREWF-GSGSK--IIITSRDEHL---- 320 (1000)
Q Consensus 255 --~~~~~~~~--~~~~~~~~~~i~~~L---~~k~~LlVLDdv~~~~~l~~l~~~~~~~-~~gsr--IIiTTR~~~v---- 320 (1000)
..+..... .....+....+.+.+ .++++++|||+++...+-+.|...+.|. ...++ ||.++...+.
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 11111111 111112223333322 4567999999998753212221111111 12333 3334433211
Q ss_pred -----hcccCCCceEecCCCChHHHHHHHHHhhc
Q 001889 321 -----LKTHGMDEVYKPSSLNYDEAFQLFNMKAF 349 (1000)
Q Consensus 321 -----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 349 (1000)
...++ ...+.+++++.+|-.+++..++-
T Consensus 180 L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 180 INIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11222 24689999999999999987753
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00015 Score=80.83 Aligned_cols=173 Identities=17% Similarity=0.207 Sum_probs=100.4
Q ss_pred cccccccchhhHHHhhcccCCC----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 187 VLKKLVGIDSRLKELRSLIDGG----------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
.-..+.|.+...++|...+... .-...+-|.++|++|.|||.||+++++.....|-.+ . ..+..
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v---~-~s~l~-- 219 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV---S-GAELV-- 219 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE---E-GGGGS--
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE---E-hHHhh--
Confidence 3467889999988887654310 113346689999999999999999999876655322 1 11110
Q ss_pred hhccCCccchhhhHHHH-HHHhcCCCcEEEecCCCCHH----------------HHHHHhcCcCCCC--CCceEEEEeCC
Q 001889 257 KLADNSIWNVDDGINIL-ASRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWFG--SGSKIIITSRD 317 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i-~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~~--~gsrIIiTTR~ 317 (1000)
.....+.+..+..+ ...-...+++|++|+++... .+..++...+.+. .+-.||.||..
T Consensus 220 ---sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr 296 (405)
T 4b4t_J 220 ---QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR 296 (405)
T ss_dssp ---CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC
T ss_pred ---ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCC
Confidence 01111111222222 22224678999999997521 1333333333222 33445667765
Q ss_pred cch-----hcccCCCceEecCCCChHHHHHHHHHhhcccCCC-ChhHHHHHHHHHHHhCCC
Q 001889 318 EHL-----LKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQP-SEECVQLSERVLQYAGGL 372 (1000)
Q Consensus 318 ~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~iv~~~~Gl 372 (1000)
.+. ......+..+.++..+.++..++|..+.-+.... ..+ ...+++.+.|.
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSC
T ss_pred hhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCC
Confidence 433 3223467789999999999999998776433222 222 34556666665
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.82 E-value=7.1e-05 Score=86.89 Aligned_cols=180 Identities=13% Similarity=0.135 Sum_probs=99.4
Q ss_pred ccccccchhhHHHhhcccCCC-----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 188 LKKLVGIDSRLKELRSLIDGG-----------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
...++|.+..+++|..++... . ...+-|.|+|++|+|||++|+++++.....| +.+ +.......
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~v-n~~~l~~~ 277 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSK 277 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEE-EHHHHHTS
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEE-EchHhhhh
Confidence 356899999999887776421 1 2345689999999999999999988764332 112 22221110
Q ss_pred hhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCH-------------HHHHHHhcCcCC--CCCCceEEEEeCCcc--
Q 001889 257 KLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDI-------------KQLEYLAGKREW--FGSGSKIIITSRDEH-- 319 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~-------------~~l~~l~~~~~~--~~~gsrIIiTTR~~~-- 319 (1000)
............+.....+++.+|+||+++.. .....|+..+.. ...+.+||.||....
T Consensus 278 ----~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 278 ----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (489)
T ss_dssp ----CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGB
T ss_pred ----hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcccc
Confidence 00011111223344444567889999999421 112222222211 123445666776542
Q ss_pred ---hhcccCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCC-chHHHHH
Q 001889 320 ---LLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGL-PVALEVL 379 (1000)
Q Consensus 320 ---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~Gl-PLAl~~l 379 (1000)
+.........+.+...+.++-.+++..++.......+. ...+++..+.|. +-.|..+
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~---~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV---DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC---CHHHHHHTCTTCCHHHHHHH
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh---hHHHHHHHccCCcHHHHHHH
Confidence 22212344578999999999999998876432222111 123455555554 4344433
No 202
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.78 E-value=1.4e-05 Score=79.88 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.0
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+.++|+|++|+||||||+++++.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998875
No 203
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=0.00014 Score=80.78 Aligned_cols=174 Identities=13% Similarity=0.141 Sum_probs=100.7
Q ss_pred cccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc-cce-EEEEechhHhHHhhhccCCcc
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN-LKG-VVFLPMLEKNLKKKLADNSIW 264 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~~~ 264 (1000)
....++|.+..++.|...+..+ ....+.++|+.|+||||+|+.+++.+... +.. ..-+... ...
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g---~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~-----------~~~ 88 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEG---KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS-----------DDR 88 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT---CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT-----------SCC
T ss_pred cHHHhcCcHHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc-----------ccc
Confidence 3456889988888888887653 23338999999999999999999876432 111 1111100 000
Q ss_pred chhhhHHHHHHHh------cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcc-hhcc-cCCCceEecCC
Q 001889 265 NVDDGINILASRL------QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEH-LLKT-HGMDEVYKPSS 334 (1000)
Q Consensus 265 ~~~~~~~~i~~~L------~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~-~~~~~~~~l~~ 334 (1000)
..+...+.+.... .+.+-++|+|+++.. ...+.|...........++|++|.... +... ......+++.+
T Consensus 89 ~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~ 168 (340)
T 1sxj_C 89 GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQP 168 (340)
T ss_dssp SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccC
Confidence 1111122222222 134678999999652 334444433332345667777776532 1111 11123688999
Q ss_pred CChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHH
Q 001889 335 LNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVAL 376 (1000)
Q Consensus 335 L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl 376 (1000)
++.++..+.+...+-.....- ..+..+.+++.++|.+--+
T Consensus 169 l~~~~~~~~l~~~~~~~~~~i--~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 169 LPQEAIERRIANVLVHEKLKL--SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCHHHHHHHHHHHHHTTTCCB--CHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 999999888876653222111 1245677888889887643
No 204
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=8.3e-05 Score=84.20 Aligned_cols=174 Identities=16% Similarity=0.140 Sum_probs=98.5
Q ss_pred ccccccccchhhHHHhhcccCC----C------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHH
Q 001889 186 EVLKKLVGIDSRLKELRSLIDG----G------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLK 255 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~----~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 255 (1000)
.....+.|.+...++|...+.. . .-...+-|.++|++|.|||+||+++++.....|-.+ .....
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v----~~s~l-- 251 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL----AAPQL-- 251 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE----EGGGG--
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE----ehhhh--
Confidence 3456789999998887754321 0 113457799999999999999999999876554322 11111
Q ss_pred hhhccCCccchhhhHHHHHH-HhcCCCcEEEecCCCCHH----------------HHHHHhcCcCCCCC--CceEEEEeC
Q 001889 256 KKLADNSIWNVDDGINILAS-RLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWFGS--GSKIIITSR 316 (1000)
Q Consensus 256 ~~~~~~~~~~~~~~~~~i~~-~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~~~--gsrIIiTTR 316 (1000)
...........+..+.. .-...+++|++|+++... .+..++...+.+.. +-.||.||.
T Consensus 252 ---~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 252 ---VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp ---CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred ---hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 01111111122222222 224578999999986421 12234333333322 334555776
Q ss_pred Ccchhc-----ccCCCceEecCCCChHHHHHHHHHhhcccCCC-ChhHHHHHHHHHHHhCCC
Q 001889 317 DEHLLK-----THGMDEVYKPSSLNYDEAFQLFNMKAFKSQQP-SEECVQLSERVLQYAGGL 372 (1000)
Q Consensus 317 ~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~iv~~~~Gl 372 (1000)
..+.+. ....+..++++..+.++..++|..+.-+-... .-+ ...+++.+.|.
T Consensus 329 rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 544322 22345678999999999999998766432221 122 24455666664
No 205
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.74 E-value=0.00085 Score=74.15 Aligned_cols=255 Identities=17% Similarity=0.190 Sum_probs=130.9
Q ss_pred cccccccchhhHHHhhcccCCC--CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCcc
Q 001889 187 VLKKLVGIDSRLKELRSLIDGG--PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIW 264 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 264 (1000)
....++|.+..++.+...+..+ .......++|+|++|+||||||+.+++.+...|... . .. ...
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~---s--g~---------~~~ 88 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT---S--GP---------VLV 88 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEE---E--TT---------TCC
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE---e--ch---------Hhc
Confidence 4457888888777776655421 012335789999999999999999999875433211 0 00 000
Q ss_pred chhhhHHHHHHHhcCCCcEEEecCCCCH--HHHHHHhcCcCCC--------C----------CCceEE-EEeCCcchhcc
Q 001889 265 NVDDGINILASRLQHKKVLLVIDDVVDI--KQLEYLAGKREWF--------G----------SGSKII-ITSRDEHLLKT 323 (1000)
Q Consensus 265 ~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~--------~----------~gsrII-iTTR~~~v~~~ 323 (1000)
...+. ..+...+ .++-++++|+++.. ...+.+....... + +...++ .|++...+...
T Consensus 89 ~~~~l-~~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~ 166 (334)
T 1in4_A 89 KQGDM-AAILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSP 166 (334)
T ss_dssp SHHHH-HHHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHH
T ss_pred CHHHH-HHHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHH
Confidence 01111 1111222 24457788888643 2333332111100 0 111222 34443322111
Q ss_pred c--CCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh------cC---CCHHHHH
Q 001889 324 H--GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLGSFL------NG---RSLDQWK 392 (1000)
Q Consensus 324 ~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg~~L------~~---~~~~~w~ 392 (1000)
. .....+.+++.+.++-.+++.+.+-..... -..+.+..|++++.|.|-.+..+...+ .+ -+.+..+
T Consensus 167 l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~ 244 (334)
T 1in4_A 167 LRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVL 244 (334)
T ss_dssp HHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHH
T ss_pred HHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 1 222357899999999999998876432221 123567889999999986543332211 11 2344444
Q ss_pred HHHHHhhcCCCcchhhHHHhhhcCCChhhHHHhhhhhcccCCc--CHHHHHHHHhcCCCCcchhhH-----HhhcccceE
Q 001889 393 STLERLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFNLE--DRDYVTKVLDGCDFSPVIGIE-----VLINKSLIT 465 (1000)
Q Consensus 393 ~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~la~f~~~~--~~~~~~~~~~~~~~~~~~~l~-----~L~~~sLi~ 465 (1000)
.++..+.. ...+++...+.++..++-.+.+. ..+.+...+.. .+ ..+. .|...++|+
T Consensus 245 ~al~~~~~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~---~~-~t~~~~~~~~l~~~g~i~ 308 (334)
T 1in4_A 245 KTMEVLNI------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGV---EA-DTLSEVYEPYLLQAGFLA 308 (334)
T ss_dssp HHHHHHTC------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTS---CH-HHHHHHTHHHHHHTTSEE
T ss_pred HHHHHhCC------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCC---Cc-chHHHHHHHHHHHcCCee
Confidence 44444321 11355655555555444333332 23333333322 21 1122 678889998
Q ss_pred EecCCchhhh
Q 001889 466 ILNDNTLWMH 475 (1000)
Q Consensus 466 ~~~~~~~~mH 475 (1000)
....+++-..
T Consensus 309 ~~~~gr~~~~ 318 (334)
T 1in4_A 309 RTPRGRIVTE 318 (334)
T ss_dssp EETTEEEECH
T ss_pred cccccHHhhH
Confidence 8766665433
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.74 E-value=0.00024 Score=75.44 Aligned_cols=154 Identities=13% Similarity=0.184 Sum_probs=83.0
Q ss_pred ccccccccchhhHHHhhcccCC---C------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 186 EVLKKLVGIDSRLKELRSLIDG---G------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~---~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
.....++|.+...+++..++.. . .....+-+.|+|++|+||||||+++++.....| +.+.. ....
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~~-~~~~-- 82 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISG-SDFV-- 82 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEECS-CSST--
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEeH-HHHH--
Confidence 3456788988887776544321 0 001234588999999999999999998765433 22221 1100
Q ss_pred hhccCCccchhhh-HHHHHHHhcCCCcEEEecCCCCH----------------HHHHHHhcCcCCC--CCCceEEEEeCC
Q 001889 257 KLADNSIWNVDDG-INILASRLQHKKVLLVIDDVVDI----------------KQLEYLAGKREWF--GSGSKIIITSRD 317 (1000)
Q Consensus 257 ~~~~~~~~~~~~~-~~~i~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~~--~~gsrIIiTTR~ 317 (1000)
.......... ...+.......+.++++|+++.. ..+..+....... ..+..||.||..
T Consensus 83 ---~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 159 (257)
T 1lv7_A 83 ---EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR 159 (257)
T ss_dssp ---TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC
T ss_pred ---HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCC
Confidence 0001111111 22233333446679999998422 1222332221111 234566777765
Q ss_pred cchh-----cccCCCceEecCCCChHHHHHHHHHhh
Q 001889 318 EHLL-----KTHGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 318 ~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
.... .....+..+.++..+.++-.+++..+.
T Consensus 160 ~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 160 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 4322 111234577888888888888887665
No 207
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.73 E-value=0.00014 Score=80.60 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=97.7
Q ss_pred hhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceE---EEE-echhHhHHhh------hcc---CC
Q 001889 196 SRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGV---VFL-PMLEKNLKKK------LAD---NS 262 (1000)
Q Consensus 196 ~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~---~~~-~~~~~~~~~~------~~~---~~ 262 (1000)
...+.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+....... |-. ...+...... ... ..
T Consensus 9 ~~~~~l~~~i~~~--~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 86 (334)
T 1a5t_A 9 PDFEKLVASYQAG--RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHTT--CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred HHHHHHHHHHHcC--CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence 3344555555432 2245788999999999999999998765332100 000 0000000000 000 00
Q ss_pred ccchhhhHHHHHHHh-----cCCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCcc-hhccc-CCCceEecC
Q 001889 263 IWNVDDGINILASRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDEH-LLKTH-GMDEVYKPS 333 (1000)
Q Consensus 263 ~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~l~ 333 (1000)
....++ +..+.+.+ .+++-++|+|+++.. +..+.|........++..+|++|.+.+ +.... .....+++.
T Consensus 87 ~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~ 165 (334)
T 1a5t_A 87 TLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLA 165 (334)
T ss_dssp SBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred CCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCC
Confidence 111222 22233333 245778999999863 334555544443345677777777643 22211 223578999
Q ss_pred CCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001889 334 SLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLPVALEVLG 380 (1000)
Q Consensus 334 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLAl~~lg 380 (1000)
+++.++..+++.... . .. .+.+..+++.++|.|..+..+.
T Consensus 166 ~~~~~~~~~~L~~~~---~-~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 166 PPPEQYAVTWLSREV---T-MS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp CCCHHHHHHHHHHHC---C-CC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred CCCHHHHHHHHHHhc---C-CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 999999999988765 1 11 2345778899999997655443
No 208
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00026 Score=80.19 Aligned_cols=172 Identities=22% Similarity=0.278 Sum_probs=98.4
Q ss_pred ccccccchhhHHHhhcccCCC----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 188 LKKLVGIDSRLKELRSLIDGG----------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
...+.|.+...++|...+... .-...+-|.++|++|.|||+||+++++.....|-.+ . ..+..
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v---~-~s~l~--- 252 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS---P-ASGIV--- 252 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE---E-GGGTC---
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE---e-hhhhc---
Confidence 457889999888876654310 113457799999999999999999999876554321 1 11110
Q ss_pred hccCCccchhhhHHH-HHHHhcCCCcEEEecCCCCHH----------------HHHHHhcCcCCC--CCCceEEEEeCCc
Q 001889 258 LADNSIWNVDDGINI-LASRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWF--GSGSKIIITSRDE 318 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~-i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~ 318 (1000)
..........+.. +...-...+.+|++|+++... .+..|+...+.+ ..+..||.||...
T Consensus 253 --sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp 330 (437)
T 4b4t_L 253 --DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRP 330 (437)
T ss_dssp --CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESST
T ss_pred --cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCc
Confidence 0111111112222 222234688999999997421 123333332222 2345677777654
Q ss_pred chhc-----ccCCCceEecCCCChHHHHHHHHHhhcccCC-CChhHHHHHHHHHHHhCCC
Q 001889 319 HLLK-----THGMDEVYKPSSLNYDEAFQLFNMKAFKSQQ-PSEECVQLSERVLQYAGGL 372 (1000)
Q Consensus 319 ~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~l~~~iv~~~~Gl 372 (1000)
..+. ....+..++++..+.++..++|..+.-+... +..++ ..+++.+.|.
T Consensus 331 ~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~ 386 (437)
T 4b4t_L 331 DTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGF 386 (437)
T ss_dssp TSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSC
T ss_pred hhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCC
Confidence 3322 2224567889988999999999877643322 12222 3455566654
No 209
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00034 Score=79.04 Aligned_cols=171 Identities=15% Similarity=0.194 Sum_probs=98.3
Q ss_pred ccccccchhhHHHhhcccCC-----------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 188 LKKLVGIDSRLKELRSLIDG-----------GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
...+.|.+...++|...+.. +- ...+-|.++|++|.|||+||+++++.....|-.+ ...+.
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v----s~s~L--- 279 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANRTDATFIRV----IGSEL--- 279 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE----EGGGG---
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE----EhHHh---
Confidence 35788999988888765421 11 3457789999999999999999999876654322 11111
Q ss_pred hhccCCccchhhhHH-HHHHHhcCCCcEEEecCCCCHH----------------HHHHHhcCcCCCC--CCceEEEEeCC
Q 001889 257 KLADNSIWNVDDGIN-ILASRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWFG--SGSKIIITSRD 317 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~-~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~~--~gsrIIiTTR~ 317 (1000)
........+..+. .+...-...+.+|++|+++... .+..++...+.+. .+-.||.||-.
T Consensus 280 --~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNr 357 (467)
T 4b4t_H 280 --VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNR 357 (467)
T ss_dssp --CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSC
T ss_pred --hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCC
Confidence 0111111112222 2222334678999999997421 1222322222222 23345556654
Q ss_pred cch-----hcccCCCceEecCCCChHHHHHHHHHhhcccCCC-ChhHHHHHHHHHHHhCCC
Q 001889 318 EHL-----LKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQP-SEECVQLSERVLQYAGGL 372 (1000)
Q Consensus 318 ~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~iv~~~~Gl 372 (1000)
... ......+..++++..+.++..++|..+.-+-... ..+ ...|++.+.|.
T Consensus 358 pd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 358 PNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNS 414 (467)
T ss_dssp TTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSC
T ss_pred cccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCC
Confidence 332 2222467789999999999999998776432221 112 24455666665
No 210
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.67 E-value=0.00018 Score=83.40 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=81.4
Q ss_pred cccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc------ceEEEEechhHhHHhhhcc
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL------KGVVFLPMLEKNLKKKLAD 260 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 260 (1000)
..+.+||++.+++.+...+.... ..-+.|+|++|+|||++|+.+++.+.... ...++..+.....
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~---~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~------ 248 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRT---KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY------ 248 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS---SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCccCcHHHHHHHHHHHhccC---CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccc------
Confidence 34579999999999998886532 33567999999999999999999874422 1112211211000
Q ss_pred CCccchhhh-HHHHHHHhcCCCcEEEecCCCCHHHHHHHhcCcCCCCCCceEEEEeCCcchhc------c-cCCCceEec
Q 001889 261 NSIWNVDDG-INILASRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSKIIITSRDEHLLK------T-HGMDEVYKP 332 (1000)
Q Consensus 261 ~~~~~~~~~-~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~------~-~~~~~~~~l 332 (1000)
....... ...+...-..++.+|++| -..+....|.+.+. ...-++|.+|....... . ...-.++.+
T Consensus 249 --~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v 322 (468)
T 3pxg_A 249 --RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQV 322 (468)
T ss_dssp ------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred --cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCcccee
Confidence 0111112 222333334578899999 22233333444432 22345665555433110 0 011136899
Q ss_pred CCCChHHHHHHHHHhh
Q 001889 333 SSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 333 ~~L~~~ea~~Lf~~~a 348 (1000)
+.++.++..+++...+
T Consensus 323 ~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 323 DQPSVDESIQILQGLR 338 (468)
T ss_dssp CCCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998655
No 211
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.65 E-value=3e-05 Score=74.56 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=34.0
Q ss_pred ccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 190 KLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 190 ~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
+++|+...++++.+.+.... ....-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57899888888776654211 122347899999999999999998754
No 212
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.64 E-value=0.00046 Score=78.23 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=35.4
Q ss_pred CCCCCCCCCeecCCCCCCCCCCc-ccccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEcC
Q 001889 659 SLSGLCSLTKLDLSDCNIQEGAI-PRDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELED 721 (1000)
Q Consensus 659 ~l~~l~~L~~L~Ls~~~l~~~~i-p~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~ 721 (1000)
.+..+.+|+.+.+..+ +.. + ...+..+++|+.++|.. +++.++. .+.+|.+|+.+.|..
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~--I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKF--IGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCE--ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCT
T ss_pred cccccccccccccccc-cce--echhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECc
Confidence 3556677777776543 211 2 23466777777777753 3666653 556677777776643
No 213
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.62 E-value=2.2e-05 Score=84.03 Aligned_cols=153 Identities=15% Similarity=0.262 Sum_probs=82.7
Q ss_pred cccccccchhhHHHhhcccCC----------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 187 VLKKLVGIDSRLKELRSLIDG----------GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
....++|.+..++.+..++.. +. ...+-+.|+|++|+|||+||+++++.....|-.+ . .......
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v---~-~~~~~~~ 83 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM---G-GSSFIEM 83 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSC-CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC---C-SCTTTTS
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe---c-hHHHHHh
Confidence 346788988888777665431 00 1123478999999999999999998765443211 1 0000000
Q ss_pred hhccCCccchhhhHHHHHHHhcCCCcEEEecCCCCHHH-----------------HHHHhcCcCCCC---CCceEEEEeC
Q 001889 257 KLADNSIWNVDDGINILASRLQHKKVLLVIDDVVDIKQ-----------------LEYLAGKREWFG---SGSKIIITSR 316 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~-----------------l~~l~~~~~~~~---~gsrIIiTTR 316 (1000)
........... .+......++.+|+||+++.... +..+........ ....||.||.
T Consensus 84 -~~~~~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn 159 (268)
T 2r62_A 84 -FVGLGASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATN 159 (268)
T ss_dssp -CSSSCSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBS
T ss_pred -hcchHHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecC
Confidence 00000111111 22222335678999999965321 222332222211 1235666666
Q ss_pred Ccch-----hcccCCCceEecCCCChHHHHHHHHHhh
Q 001889 317 DEHL-----LKTHGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 317 ~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
.... .........+.++.++.++..+++...+
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 5432 2111234567888888888888887665
No 214
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.59 E-value=0.00036 Score=86.31 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=90.1
Q ss_pred cccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc------cceEEEEechhHhHHhhhcc
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN------LKGVVFLPMLEKNLKKKLAD 260 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~~~~~~~~~~~~~ 260 (1000)
..+.++||+.+++.+...|... ...-+.|+|.+|+||||+|+.+++.+... ....++..+....... .
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~---~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~---~ 257 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR---RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAG---T 257 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS---SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CC---C
T ss_pred CCCCccCCHHHHHHHHHHHhcc---CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcc---c
Confidence 3467999999999999888753 33457899999999999999999876432 1223333222221100 0
Q ss_pred CCccchhhhHHHHHHHhc-CCCcEEEecCCCCH----------HH-HHHHhcCcCCCCCCceEEEEeCCcchhccc----
Q 001889 261 NSIWNVDDGINILASRLQ-HKKVLLVIDDVVDI----------KQ-LEYLAGKREWFGSGSKIIITSRDEHLLKTH---- 324 (1000)
Q Consensus 261 ~~~~~~~~~~~~i~~~L~-~k~~LlVLDdv~~~----------~~-l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~---- 324 (1000)
......+.....+.+.+. .++.+|++|+++.. .+ ...+..... ..+.++|.+|.........
T Consensus 258 ~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~ 335 (758)
T 1r6b_X 258 KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDR 335 (758)
T ss_dssp CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTT
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCH
Confidence 111222333333333333 45789999999854 12 233333332 2345666666543221111
Q ss_pred ---CCCceEecCCCChHHHHHHHHHhh
Q 001889 325 ---GMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 325 ---~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
.....+.++.++.++..+++...+
T Consensus 336 aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 336 ALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp SSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 011268899999999988887554
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.58 E-value=0.00045 Score=79.50 Aligned_cols=176 Identities=15% Similarity=0.170 Sum_probs=96.6
Q ss_pred cccccccchhhHHHhhcccCC---C------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 187 VLKKLVGIDSRLKELRSLIDG---G------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~---~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
....++|.+..++++..++.. . ...-.+-|.|+|++|.||||||+++++.....|-. +. ..+...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~---is-~~~~~~-- 87 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFH---IS-GSDFVE-- 87 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE---EE-GGGTTT--
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeee---CC-HHHHHH--
Confidence 346788988877776554321 0 00112348899999999999999999876544321 21 111110
Q ss_pred hccCCccchhhhHHHHHHHhcCCCcEEEecCCCCH----------------HHHHHHhcCcCCC--CCCceEEEEeCCcc
Q 001889 258 LADNSIWNVDDGINILASRLQHKKVLLVIDDVVDI----------------KQLEYLAGKREWF--GSGSKIIITSRDEH 319 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~~--~~gsrIIiTTR~~~ 319 (1000)
.............+.......+.+|+||+++.. ..+..+....+.+ ..+..||.||...+
T Consensus 88 --~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 88 --LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp --CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred --HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 000001111122334444567899999999542 1233333222211 23456777777654
Q ss_pred hhcc-----cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHHHHHHHHHHHhCCCc
Q 001889 320 LLKT-----HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSERVLQYAGGLP 373 (1000)
Q Consensus 320 v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlP 373 (1000)
.+.. ...+..+.++..+.++-.+++..++-......+. ....+++.+.|..
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 3321 1345578899999888888887766432221111 0234666777766
No 216
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00032 Score=79.31 Aligned_cols=171 Identities=20% Similarity=0.251 Sum_probs=92.0
Q ss_pred ccccccchhhHHHhhcccCC-----------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 188 LKKLVGIDSRLKELRSLIDG-----------GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
...+.|.+...++|...+.. +- ...+-|.++|++|.|||+||+++++.....|-.+ ...+.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v----~~~~l--- 242 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV----NGSEF--- 242 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE----EGGGT---
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE----ecchh---
Confidence 45788999988887664421 11 3456799999999999999999999876554322 11111
Q ss_pred hhccCCccchhhhHH-HHHHHhcCCCcEEEecCCCCHH----------------HHHHHhcCcCCC--CCCceEEEEeCC
Q 001889 257 KLADNSIWNVDDGIN-ILASRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWF--GSGSKIIITSRD 317 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~-~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~ 317 (1000)
...........+. .+...-...+.++++|+++... .+..|+...+.+ ..+-.||.||..
T Consensus 243 --~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~ 320 (428)
T 4b4t_K 243 --VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR 320 (428)
T ss_dssp --CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESC
T ss_pred --hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 0111111111222 2222234678999999986321 122333222211 234456667765
Q ss_pred cch-----hcccCCCceEecCCC-ChHHHHHHHHHhhcccCC-CChhHHHHHHHHHHHhCCC
Q 001889 318 EHL-----LKTHGMDEVYKPSSL-NYDEAFQLFNMKAFKSQQ-PSEECVQLSERVLQYAGGL 372 (1000)
Q Consensus 318 ~~v-----~~~~~~~~~~~l~~L-~~~ea~~Lf~~~a~~~~~-~~~~~~~l~~~iv~~~~Gl 372 (1000)
.+. ......+..++++.+ +.++..++|..+.-+... +..+ ...+++.+.|.
T Consensus 321 ~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 321 ADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp SSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred hhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 432 222234556778655 455556677666533222 1222 24555566664
No 217
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.57 E-value=0.00027 Score=88.48 Aligned_cols=153 Identities=11% Similarity=0.095 Sum_probs=81.6
Q ss_pred cccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc------ceEEEEechhHhHHhhhcc
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL------KGVVFLPMLEKNLKKKLAD 260 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 260 (1000)
..+.+|||+.++..+...|... ..+.+.|+|++|+||||||+.+++.+.... ...++.-+....... .
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~---~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g---~ 241 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRR---TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG---A 241 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCS---SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCcccCCcHHHHHHHHHHHhcC---CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc---C
Confidence 4467999999999999888653 234578999999999999999999874321 222222222211100 0
Q ss_pred CCccchhhhHHHHHHHhc--CCCcEEEecCCCCHHH----------HHHHhcCcCCCCCCceEEEEeCCcch-----hcc
Q 001889 261 NSIWNVDDGINILASRLQ--HKKVLLVIDDVVDIKQ----------LEYLAGKREWFGSGSKIIITSRDEHL-----LKT 323 (1000)
Q Consensus 261 ~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~~----------l~~l~~~~~~~~~gsrIIiTTR~~~v-----~~~ 323 (1000)
....+.......+.+.+. +++.+|++|+++.... .+.+..... ..+-++|.+|..... ...
T Consensus 242 ~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~a 319 (854)
T 1qvr_A 242 KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPA 319 (854)
T ss_dssp ----CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCHH
Confidence 001122222333333332 3678999999986531 111222111 123456655543221 111
Q ss_pred c-CCCceEecCCCChHHHHHHHHHh
Q 001889 324 H-GMDEVYKPSSLNYDEAFQLFNMK 347 (1000)
Q Consensus 324 ~-~~~~~~~l~~L~~~ea~~Lf~~~ 347 (1000)
. .....+.++.++.++..+++...
T Consensus 320 L~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 320 LERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp TCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred HHhCCceEEeCCCCHHHHHHHHHhh
Confidence 1 11135889999999999998644
No 218
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00034 Score=78.22 Aligned_cols=173 Identities=14% Similarity=0.172 Sum_probs=97.6
Q ss_pred cccccccchhhHHHhhcccCC----C------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 187 VLKKLVGIDSRLKELRSLIDG----G------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~----~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
....+.|.+...++|...+.. . .-...+-|.++|++|.|||.||+++++.....|-.+ ...+.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v----~~s~l--- 252 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI----VGSEL--- 252 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE----ESGGG---
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE----EHHHh---
Confidence 345788999988887664421 0 113356799999999999999999999876654322 11111
Q ss_pred hhccCCccchhhhHHHHHH-HhcCCCcEEEecCCCCHH----------------HHHHHhcCcCCCC--CCceEEEEeCC
Q 001889 257 KLADNSIWNVDDGINILAS-RLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWFG--SGSKIIITSRD 317 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~-~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~~--~gsrIIiTTR~ 317 (1000)
......+.+..+..+.+ .-...+.+|++|+++... .+..++...+.+. .+-.||.||-.
T Consensus 253 --~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNr 330 (437)
T 4b4t_I 253 --IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNK 330 (437)
T ss_dssp --CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESC
T ss_pred --hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCC
Confidence 01111111222222222 224678999999987421 1223332222222 33456667765
Q ss_pred cchhcc-----cCCCceEecCCCChHHHHHHHHHhhcccCCC-ChhHHHHHHHHHHHhCCC
Q 001889 318 EHLLKT-----HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQP-SEECVQLSERVLQYAGGL 372 (1000)
Q Consensus 318 ~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~iv~~~~Gl 372 (1000)
.+.+.. ...+..+.++..+.++..++|..+.-+.... ..++ ..+++.+.|.
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 443321 2345678899889999999998776433221 1222 3455566554
No 219
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.55 E-value=0.00047 Score=74.69 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=25.9
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
...+.+.++|++|+|||+||+++++.+...|
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3456889999999999999999999885443
No 220
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.54 E-value=6.8e-06 Score=82.76 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=19.7
Q ss_pred cCCCCCCcEEEeeCCCCCc-----ccCccccCcCCcceeeccccccc
Q 001889 577 INGLKSLKTLCLSGCSELE-----NVPENMEKIESLEELDISGTAIR 618 (1000)
Q Consensus 577 i~~l~~L~~L~Ls~c~~l~-----~lp~~l~~l~~L~~L~L~~~~i~ 618 (1000)
+...++|++|+|++|..+. .+...+...++|++|+|++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 3345556666665542222 12333444455555555555443
No 221
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.53 E-value=4.2e-05 Score=75.34 Aligned_cols=62 Identities=16% Similarity=0.271 Sum_probs=32.0
Q ss_pred CCCCeeeccCCccccc-CCccccCCCCCEEeccCCCCCccc-CcccCCC----CCCcEEEeeCCCCCc
Q 001889 534 EDLSELFLDGTSITEV-PSSIELLTGLQLLNLSDCKDLVRL-PSRINGL----KSLKTLCLSGCSELE 595 (1000)
Q Consensus 534 ~~L~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~l-p~~i~~l----~~L~~L~Ls~c~~l~ 595 (1000)
.+|+.|+++++.|+.. -..+..+++|+.|+|++|..+..- -..+..+ ++|++|+|++|..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 3577777777665521 223455666666666666544321 0112222 246666666665544
No 222
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.47 E-value=2.9e-05 Score=78.07 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=30.8
Q ss_pred hhhcCCCCCCeeeccCC-ccc-----ccCCccccCCCCCEEeccCCCCCc----ccCcccCCCCCCcEEEeeCC
Q 001889 528 EILRSMEDLSELFLDGT-SIT-----EVPSSIELLTGLQLLNLSDCKDLV----RLPSRINGLKSLKTLCLSGC 591 (1000)
Q Consensus 528 ~~~~~l~~L~~L~L~~~-~i~-----~lp~si~~L~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls~c 591 (1000)
..+...++|++|+|++| .+. .+...+...++|++|+|++|..-. .+...+...++|++|+|++|
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 34445566666666665 554 233334445556666665554211 12222333445555555554
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.44 E-value=0.0014 Score=81.03 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=82.6
Q ss_pred cccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhccc------ceEEEEechhHhHHhhhcc
Q 001889 187 VLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNL------KGVVFLPMLEKNLKKKLAD 260 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 260 (1000)
..+.+||++.+++.+...|... ...-+.++|++|+|||++|+.+++.+.... ...++-.+... .
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~---~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~-------~ 247 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRR---TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT-------K 247 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS---SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCccCchHHHHHHHHHHhCC---CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc-------c
Confidence 3457999999999999888653 233478999999999999999999863321 11222111100 0
Q ss_pred CCccchhhh-HHHHHHHhcCCCcEEEecCCCCHHHHHHHhcCcCCCCCCceEEEEeCCcchhc------cc-CCCceEec
Q 001889 261 NSIWNVDDG-INILASRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSKIIITSRDEHLLK------TH-GMDEVYKP 332 (1000)
Q Consensus 261 ~~~~~~~~~-~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~------~~-~~~~~~~l 332 (1000)
. ....+.. ...+......++.+|++| ...+....+.+... ...-++|.||....... .. ..-..+.+
T Consensus 248 ~-~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v 322 (758)
T 3pxi_A 248 Y-RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQV 322 (758)
T ss_dssp ------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred c-cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEe
Confidence 0 0111122 223333344678899999 22333344444433 23456666665433100 00 01146899
Q ss_pred CCCChHHHHHHHHHhh
Q 001889 333 SSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 333 ~~L~~~ea~~Lf~~~a 348 (1000)
+.++.++..+++....
T Consensus 323 ~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 323 DQPSVDESIQILQGLR 338 (758)
T ss_dssp CCCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 224
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.40 E-value=0.00022 Score=72.60 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=39.7
Q ss_pred cccccccchh----hHHHhhcccCCCCCC-CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 187 VLKKLVGIDS----RLKELRSLIDGGPND-DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 187 ~~~~~vGr~~----~l~~l~~~L~~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
..++|++... .++.+..++...... ..+.+.|+|++|+||||||+++++....+...++++.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456665442 334444444322111 1267899999999999999999998766555555654
No 225
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.39 E-value=3.9e-05 Score=75.62 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=36.5
Q ss_pred CCCeecCCCCCCCCCCcccccCCCCcCcEEeCCCCC-Cccc-cccccCC----CCcCEEEEcCCcCCCc-----cCCCCC
Q 001889 665 SLTKLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNS-FVSL-PATISLL----FKLEELELEDCKRLQS-----LPQLPP 733 (1000)
Q Consensus 665 ~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~-l~~l-p~~i~~l----~~L~~L~L~~c~~L~~-----lp~l~~ 733 (1000)
.|++||+++|.+++..+ ..+..+++|+.|+|++|. ++.- -..+..+ ++|++|+|++|.+++. |.. .+
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CT
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CC
Confidence 34444444444433222 223445555555555552 3310 0112221 3455666666555442 222 25
Q ss_pred CccEEeeeCCCCCcc
Q 001889 734 NIVSVSVNDCASLGK 748 (1000)
Q Consensus 734 ~L~~L~~~~C~~L~~ 748 (1000)
+|+.|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 566666666655543
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.29 E-value=0.00034 Score=76.23 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=35.9
Q ss_pred cccccchhhHHHhhcccCCC-----------CCCCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 189 KKLVGIDSRLKELRSLIDGG-----------PNDDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
..++|.+..++.+...+... .......+.|+|++|+|||++|+++++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35778887777776554320 0012346789999999999999999987743
No 227
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.28 E-value=0.0011 Score=72.41 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=36.1
Q ss_pred ccccchhhHHHhhcccCCC------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 190 KLVGIDSRLKELRSLIDGG------PNDDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 190 ~~vGr~~~l~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
.++|.+..++.+...+... .......+.|+|++|+||||+|+.+++.....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 5677777776665544321 11224579999999999999999999876443
No 228
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.21 E-value=0.0038 Score=70.56 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=15.6
Q ss_pred hcCCCCCCeeeccCCcccccCC-ccccCCCCCEEecc
Q 001889 530 LRSMEDLSELFLDGTSITEVPS-SIELLTGLQLLNLS 565 (1000)
Q Consensus 530 ~~~l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~ 565 (1000)
|.+|++|+.+.+.++ +..++. .+..+.+|+.+++.
T Consensus 158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred hcccCCCcEEecCCc-cceeccccccCCCCceEEEcC
Confidence 444555555555432 222222 24445555555554
No 229
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.16 E-value=9.6e-05 Score=70.81 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=32.1
Q ss_pred ccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 190 KLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 190 ~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.++|.+..++++.+.+.... ....-|.|+|.+|+|||++|+++++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 57888888887776654211 112347899999999999999987654
No 230
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.12 E-value=0.0011 Score=71.85 Aligned_cols=141 Identities=16% Similarity=0.094 Sum_probs=84.2
Q ss_pred cchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhh---cccceEEEEechhHhHHhhhccCCccchhhh
Q 001889 193 GIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTIS---MNLKGVVFLPMLEKNLKKKLADNSIWNVDDG 269 (1000)
Q Consensus 193 Gr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (1000)
|-+..++.|...+..+ ..+...++|+.|+||||+|+++++... ........+... ......++.
T Consensus 1 g~~~~~~~L~~~i~~~---~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~----------~~~~~id~i 67 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS---EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE----------GENIGIDDI 67 (305)
T ss_dssp ---CHHHHHHHHHHTC---SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS----------SSCBCHHHH
T ss_pred ChHHHHHHHHHHHHCC---CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC----------cCCCCHHHH
Confidence 3345566666666543 367889999999999999999987521 112222333210 001112222
Q ss_pred HHHHHHHhc-----CCCcEEEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCc-chhcccCCCceEecCCCChHHHH
Q 001889 270 INILASRLQ-----HKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDE-HLLKTHGMDEVYKPSSLNYDEAF 341 (1000)
Q Consensus 270 ~~~i~~~L~-----~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~l~~L~~~ea~ 341 (1000)
. .+.+... +++-++|+|+++.. ...+.|+.......+.+.+|++|.++ .+....... .+++.+++.++..
T Consensus 68 r-~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~ 145 (305)
T 2gno_A 68 R-TIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFR 145 (305)
T ss_dssp H-HHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHH
T ss_pred H-HHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHH
Confidence 2 2233332 35668999999763 34555554444335677887777554 344333334 8999999999999
Q ss_pred HHHHHhh
Q 001889 342 QLFNMKA 348 (1000)
Q Consensus 342 ~Lf~~~a 348 (1000)
+.+...+
T Consensus 146 ~~L~~~~ 152 (305)
T 2gno_A 146 DLVKEKI 152 (305)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987765
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.10 E-value=0.0014 Score=79.73 Aligned_cols=173 Identities=13% Similarity=0.126 Sum_probs=97.1
Q ss_pred ccccccchhhHHHhhcccCC----------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 188 LKKLVGIDSRLKELRSLIDG----------GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
...+.|.+..+++|...+.. -.....+-|.++|++|.|||+||+++++.....| +..+..+...
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~~l~s-- 276 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMS-- 276 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHHHHHS--
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhHHhhc--
Confidence 45688998888877654321 1113457799999999999999999998765443 2222222111
Q ss_pred hccCCccchhh-hHHHHHHHhcCCCcEEEecCCCCHH-------------HHHHHhcCcCCCC--CCceEEEEeCCcch-
Q 001889 258 LADNSIWNVDD-GINILASRLQHKKVLLVIDDVVDIK-------------QLEYLAGKREWFG--SGSKIIITSRDEHL- 320 (1000)
Q Consensus 258 ~~~~~~~~~~~-~~~~i~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~~--~gsrIIiTTR~~~v- 320 (1000)
. .....+. ....+.......+.+|+||+++... .+..|+...+... .+-.||.||...+.
T Consensus 277 --k-~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 --K-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp --S-CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred --c-cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 1 1111112 2223333345678999999997521 1233332222111 23345556654332
Q ss_pred ----hcccCCCceEecCCCChHHHHHHHHHhhcccCCC-ChhHHHHHHHHHHHhCCCc
Q 001889 321 ----LKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQP-SEECVQLSERVLQYAGGLP 373 (1000)
Q Consensus 321 ----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~iv~~~~GlP 373 (1000)
......+..+++...+.++-.++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 2222346688999999999999998776332211 112 345666666653
No 232
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.09 E-value=0.00075 Score=64.98 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=26.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
..++|+|+.|.|||||++.++......=...+++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 47999999999999999999987654211245554
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.06 E-value=0.0047 Score=72.76 Aligned_cols=156 Identities=11% Similarity=0.108 Sum_probs=76.0
Q ss_pred cccccchhhHHHhhcccCC---CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhc-cCCcc
Q 001889 189 KKLVGIDSRLKELRSLIDG---GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLA-DNSIW 264 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~-~~~~~ 264 (1000)
..++|.+...+.+...+.. ........+.|+|++|+||||||+.++......|-.+. +............ .....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~-~~~~~~~~~~~g~~~~~ig 159 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS-LGGVRDESEIRGHRRTYVG 159 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC-CCC----------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE-ecccchhhhhhhHHHHHhc
Confidence 3478887766655432210 00123458999999999999999999987754432221 1111110000000 00000
Q ss_pred chhhhHHHHHHHhcCCCcEEEecCCCCHHH------HHHHhcCcCCCC---------------CCceEEEEeCCcc----
Q 001889 265 NVDDGINILASRLQHKKVLLVIDDVVDIKQ------LEYLAGKREWFG---------------SGSKIIITSRDEH---- 319 (1000)
Q Consensus 265 ~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~------l~~l~~~~~~~~---------------~gsrIIiTTR~~~---- 319 (1000)
.................-+++||+++.... ...+...++... ....||.||....
T Consensus 160 ~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~ 239 (543)
T 3m6a_A 160 AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPG 239 (543)
T ss_dssp ----CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCH
T ss_pred cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCH
Confidence 011111111111222334888999976321 123332221100 2345666665432
Q ss_pred -hhcccCCCceEecCCCChHHHHHHHHHhh
Q 001889 320 -LLKTHGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 320 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
+...+ .++++.+++.++-.+++..+.
T Consensus 240 aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 240 PLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp HHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred HHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 22222 367899999999988887765
No 234
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.04 E-value=0.00048 Score=73.39 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=32.7
Q ss_pred ccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 188 LKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.+.++|.+..+.++.+.+.... .....|.|+|.+|+|||++|+++++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~-~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLA-PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHT-TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3568898888877665443211 1224578999999999999999998654
No 235
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.02 E-value=0.00032 Score=74.36 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=20.6
Q ss_pred CCCCCCeeeccCCcccccC---CccccCCCCCEEeccCCC
Q 001889 532 SMEDLSELFLDGTSITEVP---SSIELLTGLQLLNLSDCK 568 (1000)
Q Consensus 532 ~l~~L~~L~L~~~~i~~lp---~si~~L~~L~~L~L~~c~ 568 (1000)
++++|+.|+|++|.|..++ ..+..+++|+.|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 4556666666666655432 334455566666665544
No 236
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.97 E-value=0.0063 Score=64.14 Aligned_cols=153 Identities=16% Similarity=0.216 Sum_probs=78.6
Q ss_pred cccccccchhhHHHhhcccC---CC------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 187 VLKKLVGIDSRLKELRSLID---GG------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~---~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
..++++|.+....++..+.. .. +-.-.+-+.|+|++|+||||||++++..... ..+.+.. ......
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~~-~~~~~~- 88 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASG-SDFVEM- 88 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH-HHHHHS-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEeeH-HHHHHH-
Confidence 34567777766555543321 00 0000122899999999999999999987652 2223321 111100
Q ss_pred hccCCccchhhhHHHHHHHh-cCCCcEEEecCCCCHH----------------HHHHHhcCcCCC--CCCceEEEEeCCc
Q 001889 258 LADNSIWNVDDGINILASRL-QHKKVLLVIDDVVDIK----------------QLEYLAGKREWF--GSGSKIIITSRDE 318 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~ 318 (1000)
...........+.+.. ...+.++++|+++... .+..+...+... .....++.||...
T Consensus 89 ----~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p 164 (254)
T 1ixz_A 89 ----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 164 (254)
T ss_dssp ----CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred ----HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCc
Confidence 0001111122222222 2356899999995321 122232222111 1223345566655
Q ss_pred chhcc-----cCCCceEecCCCChHHHHHHHHHhh
Q 001889 319 HLLKT-----HGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 319 ~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
.++.. ...+..+.++..+.++-.+++..++
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 44322 2345678899899888888887665
No 237
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.89 E-value=0.022 Score=64.21 Aligned_cols=82 Identities=11% Similarity=0.205 Sum_probs=43.3
Q ss_pred hhcCCCCCCeeeccCC---cccccCC-ccccCCCCCEEeccCCCCCcccCc-ccCCCCCCcEEEeeCCCCCcccC-cccc
Q 001889 529 ILRSMEDLSELFLDGT---SITEVPS-SIELLTGLQLLNLSDCKDLVRLPS-RINGLKSLKTLCLSGCSELENVP-ENME 602 (1000)
Q Consensus 529 ~~~~l~~L~~L~L~~~---~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~ 602 (1000)
.|.+|.+|+.+.+..+ .++.+.. .+..+.+|+.+.+.++ +..++. .+..+.+|+.+.+.. .+..++ ..+.
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~ 157 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPE--GVTSVADGMFS 157 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCT--TCCEECTTTTT
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccc--eeeeeccccee
Confidence 4556777777777653 2444443 2555666666655432 333332 345566677766643 233333 2344
Q ss_pred CcCCcceeeccc
Q 001889 603 KIESLEELDISG 614 (1000)
Q Consensus 603 ~l~~L~~L~L~~ 614 (1000)
.+.+|+.+.+..
T Consensus 158 ~c~~L~~i~~~~ 169 (394)
T 4gt6_A 158 YCYSLHTVTLPD 169 (394)
T ss_dssp TCTTCCEEECCT
T ss_pred cccccccccccc
Confidence 555666665543
No 238
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.89 E-value=0.0006 Score=72.22 Aligned_cols=81 Identities=23% Similarity=0.260 Sum_probs=43.5
Q ss_pred cCCCCCcEEEccCCCCCCCCCCCccccCcccccCCCCCCCCCCeecCCCCCCCCCCcccccCCCC--cCcEEeCCCCCCc
Q 001889 625 FLMKNLKELSFRGCKGPPSSTSCSWRFPFNLMLPSLSGLCSLTKLDLSDCNIQEGAIPRDIGNLS--SLEELYLSKNSFV 702 (1000)
Q Consensus 625 ~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~--~L~~L~Ls~n~l~ 702 (1000)
..+++|+.|+|++|....- ..++..+..+++|+.|+|++|.+... ..+..+. +|++|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l----------~~l~~~~~~l~~L~~L~Ls~N~i~~~---~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL----------DDMSSIVQKAPNLKILNLSGNELKSE---RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC----------GGGTTHHHHSTTCCEEECTTSCCCSG---GGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCC----------ccchhHHhhCCCCCEEECCCCccCCc---hhhhhcccCCcceEEccCCcCc
Confidence 3467777777777764321 11122334566777777777766542 2233333 6666777766665
Q ss_pred c-cc-------ccccCCCCcCEEE
Q 001889 703 S-LP-------ATISLLFKLEELE 718 (1000)
Q Consensus 703 ~-lp-------~~i~~l~~L~~L~ 718 (1000)
. +| ..+..+++|+.|+
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCcchhHHHHHHHHCcccCeEC
Confidence 2 33 1245556665554
No 239
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.87 E-value=0.011 Score=68.29 Aligned_cols=151 Identities=16% Similarity=0.243 Sum_probs=83.7
Q ss_pred ccccccccchhhHHHhhcccC---CC------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 186 EVLKKLVGIDSRLKELRSLID---GG------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~---~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
....+++|.+..+.++..+.. .. +-.-.+-|.|+|++|.||||||++++......| +.+.. ....
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~---i~i~g-~~~~-- 101 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF---ITASG-SDFV-- 101 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCE---EEEEG-GGGT--
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEEeh-hHHH--
Confidence 345678888877666554321 10 001122389999999999999999998764322 22221 1110
Q ss_pred hhccCCccchhhhHHHHHHHhcC----CCcEEEecCCCCH----------------HHHHHHhcCcCCC--CCCceEEEE
Q 001889 257 KLADNSIWNVDDGINILASRLQH----KKVLLVIDDVVDI----------------KQLEYLAGKREWF--GSGSKIIIT 314 (1000)
Q Consensus 257 ~~~~~~~~~~~~~~~~i~~~L~~----k~~LlVLDdv~~~----------------~~l~~l~~~~~~~--~~gsrIIiT 314 (1000)
.. -.......++..++. .+.++++|+++.. ..+..+......+ ..+..|+.|
T Consensus 102 ---~~---~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 102 ---EM---FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA 175 (499)
T ss_dssp ---SS---CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEEC
T ss_pred ---Hh---hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEe
Confidence 00 011223334444433 3479999999532 1133343322211 123445556
Q ss_pred eCCcchhcc-----cCCCceEecCCCChHHHHHHHHHhh
Q 001889 315 SRDEHLLKT-----HGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 315 TR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
|.....+.. ...+..+.++..+.++-.+++..++
T Consensus 176 tn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 176 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp CSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred cCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 665544321 2345678899999998888887665
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.82 E-value=0.013 Score=62.48 Aligned_cols=124 Identities=12% Similarity=0.158 Sum_probs=70.0
Q ss_pred EEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCccchhhhHHHHHHHh-cCCCcEEEecCCCCHH-
Q 001889 216 IGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILASRL-QHKKVLLVIDDVVDIK- 293 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~~- 293 (1000)
++|+|++|.||||||++++...... .+.+... +. ...........+..+.+.. ...+.++++|+++...
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~g~-~l-----~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~ 117 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVKGP-EL-----LNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCP 117 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEETT-TT-----CSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEEcH-HH-----HhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhc
Confidence 9999999999999999999875432 2333211 00 0000111111222333322 3467899999997521
Q ss_pred ------------HHHHHhcCcCCC--CCCceEEEEeCCcchhcc-----cCCCceEecCCCChHHHHHHHHHhh
Q 001889 294 ------------QLEYLAGKREWF--GSGSKIIITSRDEHLLKT-----HGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 294 ------------~l~~l~~~~~~~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
....+...+... ....-++.+|....++.. ...+..+.++..+.++-.+++..+.
T Consensus 118 ~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 118 RRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp ---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred ccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 112222111111 123445667776654432 2456778899999999999988765
No 241
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=96.81 E-value=0.00081 Score=60.45 Aligned_cols=63 Identities=10% Similarity=0.034 Sum_probs=47.9
Q ss_pred ccccEEEcCcccccccchhHHHHHHHHcCCCeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccccchhhHHHHHH
Q 001889 12 WTYDAFLSFRGADTRKSFTSHLYAALNGKGIYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYASSTWCLDELVK 91 (1000)
Q Consensus 12 ~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~wc~~El~~ 91 (1000)
.+|.+||||+.+|. .+.|...|.+.|+.. .| +.|+.|.+.||+.++...+|.||..|+..
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 47899999999982 344555555445533 23 67888999999999999999999999976
Q ss_pred HHH
Q 001889 92 IVQ 94 (1000)
Q Consensus 92 ~~~ 94 (1000)
+.+
T Consensus 63 A~~ 65 (111)
T 1eiw_A 63 ARK 65 (111)
T ss_dssp HTT
T ss_pred HHH
Confidence 543
No 242
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.81 E-value=0.0056 Score=65.53 Aligned_cols=155 Identities=15% Similarity=0.195 Sum_probs=81.1
Q ss_pred cccccccccchhhHHHhhcccCCC---------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHH
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGG---------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLK 255 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~---------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 255 (1000)
....++++|.+...+++..+...- +-.-.+-+.|+|++|+||||||++++..... ..+.+.. .....
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~~-~~~~~ 111 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASG-SDFVE 111 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH-HHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEecH-HHHHH
Confidence 344567888887766655432110 0000122899999999999999999987652 2233321 11110
Q ss_pred hhhccCCccchhhhHHHHHHHh-cCCCcEEEecCCCCH----------------HHHHHHhcCcCCCC--CCceEEEEeC
Q 001889 256 KKLADNSIWNVDDGINILASRL-QHKKVLLVIDDVVDI----------------KQLEYLAGKREWFG--SGSKIIITSR 316 (1000)
Q Consensus 256 ~~~~~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~~~--~gsrIIiTTR 316 (1000)
. ...........+.+.. ...+.++++|+++.. ..+..+...+.... ....++.||.
T Consensus 112 ~-----~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 112 M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp S-----TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEES
T ss_pred H-----HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecC
Confidence 0 0000111122222222 245689999999532 11223322222111 1233455666
Q ss_pred Ccchhc-----ccCCCceEecCCCChHHHHHHHHHhh
Q 001889 317 DEHLLK-----THGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 317 ~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
...++. ....+..++++..+.++-.+++..++
T Consensus 187 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 544432 12345678898888888888887655
No 243
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.78 E-value=0.0019 Score=79.75 Aligned_cols=149 Identities=15% Similarity=0.223 Sum_probs=80.2
Q ss_pred cccccchhhHHHhhcccCCC------CCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCC
Q 001889 189 KKLVGIDSRLKELRSLIDGG------PNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNS 262 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 262 (1000)
..++|.+..++.+...+... +......+.++|++|+|||++|+++++.....-...+.+. ..+......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~---- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHS---- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccc----
Confidence 56889998887766554311 1122346899999999999999999987644323333332 222111100
Q ss_pred ccchhhhHHHHHHHhcCCCcEEEecCCCCH--HHHHHHhcCcCC-----------CCCCceEEEEeCCc-----------
Q 001889 263 IWNVDDGINILASRLQHKKVLLVIDDVVDI--KQLEYLAGKREW-----------FGSGSKIIITSRDE----------- 318 (1000)
Q Consensus 263 ~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~-----------~~~gsrIIiTTR~~----------- 318 (1000)
. ........++ ....-+|+||+++.. +....|...+.. .....+||+||...
T Consensus 566 ~-~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~ 641 (758)
T 3pxi_A 566 T-SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGEL 641 (758)
T ss_dssp C-C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHH
T ss_pred c-ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHH
Confidence 0 0111112222 234458999999753 333333322111 12356788888731
Q ss_pred ------chhcccCCCceEecCCCChHHHHHHHHHhh
Q 001889 319 ------HLLKTHGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 319 ------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
.+.. ..+.++.+.+|+.++..+++...+
T Consensus 642 ~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 642 KRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp HHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHH
T ss_pred HhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHH
Confidence 1112 233578889998888877775543
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.68 E-value=0.003 Score=78.06 Aligned_cols=153 Identities=12% Similarity=0.146 Sum_probs=85.0
Q ss_pred cccccccchhhHHHhhcccCC----------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh
Q 001889 187 VLKKLVGIDSRLKELRSLIDG----------GPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK 256 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 256 (1000)
....++|.+..+++|..++.. -.-...+.|.|+|++|+||||||++++..+...| +.+. ..+..
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~-- 275 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIM-- 275 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHS--
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhh--
Confidence 346799999998887766532 0113345799999999999999999998765433 2222 11110
Q ss_pred hhccCCccchhhh-HHHHHHHhcCCCcEEEecCCCCH----------------HHHHHHhcCcCCCCCCceEEEEeCCcc
Q 001889 257 KLADNSIWNVDDG-INILASRLQHKKVLLVIDDVVDI----------------KQLEYLAGKREWFGSGSKIIITSRDEH 319 (1000)
Q Consensus 257 ~~~~~~~~~~~~~-~~~i~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~~~~gsrIIiTTR~~~ 319 (1000)
.......... ...+.......+.++++|+++.. .++-.+..... ...+..+|.||....
T Consensus 276 ---~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI~atn~~~ 351 (806)
T 1ypw_A 276 ---SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPN 351 (806)
T ss_dssp ---SSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEEEECSCTT
T ss_pred ---hhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEecccCCch
Confidence 0011111111 22233333456789999999421 11212222211 113345555665532
Q ss_pred hhcc-----cCCCceEecCCCChHHHHHHHHHhhc
Q 001889 320 LLKT-----HGMDEVYKPSSLNYDEAFQLFNMKAF 349 (1000)
Q Consensus 320 v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 349 (1000)
.+.. ......+.+...+.++..+++..++-
T Consensus 352 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred hcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 2211 12335678888888888888876653
No 245
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.62 E-value=0.0015 Score=71.08 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=35.3
Q ss_pred cccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 189 KKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
..++|....+.++...+.... .....|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 357888888887766654322 223357899999999999999998854
No 246
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.52 E-value=0.0045 Score=68.16 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=79.6
Q ss_pred ccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEech--hHhHHhhhccCCccc
Q 001889 188 LKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPML--EKNLKKKLADNSIWN 265 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~~~~ 265 (1000)
...++|++..++.+...+..+ .-+.++|++|+|||+||+++++.+...|..+-+-... .+.............
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~-----~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~ 100 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG-----GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGN 100 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT-----CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTE
T ss_pred ccceeCcHHHHHHHHHHHHcC-----CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCc
Confidence 346889998888877666432 2588999999999999999998775554332221111 000000000000000
Q ss_pred hhhhHHHHHHHhcC---CCcEEEecCCCCH--HHHHHHhcCcC-----------CCCCCceEEEEeCCcc----------
Q 001889 266 VDDGINILASRLQH---KKVLLVIDDVVDI--KQLEYLAGKRE-----------WFGSGSKIIITSRDEH---------- 319 (1000)
Q Consensus 266 ~~~~~~~i~~~L~~---k~~LlVLDdv~~~--~~l~~l~~~~~-----------~~~~gsrIIiTTR~~~---------- 319 (1000)
. .+.. ...++++|+++.. .....+..... .......||.|+....
T Consensus 101 ~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~ 171 (331)
T 2r44_A 101 F---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEA 171 (331)
T ss_dssp E---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHH
T ss_pred e---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHH
Confidence 0 0011 1358999999753 22333222111 1123445555665322
Q ss_pred hhcccCCCceEecCCCChHHHHHHHHHhhc
Q 001889 320 LLKTHGMDEVYKPSSLNYDEAFQLFNMKAF 349 (1000)
Q Consensus 320 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 349 (1000)
+.. .....+.++.++.++-.+++...+.
T Consensus 172 l~~--Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 172 QVD--RFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp HHT--TSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred HHh--heeEEEEcCCCCHHHHHHHHHhccc
Confidence 111 1223588999999999999887764
No 247
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.46 E-value=0.049 Score=61.32 Aligned_cols=78 Identities=13% Similarity=0.245 Sum_probs=47.2
Q ss_pred CCCCCCCCCCeecCCCCCCCCCCcc-cccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEcCCcCCCccCC----C
Q 001889 658 PSLSGLCSLTKLDLSDCNIQEGAIP-RDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELEDCKRLQSLPQ----L 731 (1000)
Q Consensus 658 ~~l~~l~~L~~L~Ls~~~l~~~~ip-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~----l 731 (1000)
..+.++.+|+.+.+... +.. ++ ..|..+.+|+.+.|..+ ++.+.. .+.+|.+|+.+.|.. .++.++. -
T Consensus 282 ~aF~~c~~L~~i~l~~~-i~~--I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~ 355 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSSR-ITE--LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSN 355 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTT
T ss_pred cccccccccccccCCCc-ccc--cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhC
Confidence 34667778888887532 222 33 35667888888888653 666654 567788888888753 2455542 2
Q ss_pred CCCccEEeee
Q 001889 732 PPNIVSVSVN 741 (1000)
Q Consensus 732 ~~~L~~L~~~ 741 (1000)
+.+|+.+++.
T Consensus 356 C~~L~~i~~~ 365 (394)
T 4gt6_A 356 CTALNNIEYS 365 (394)
T ss_dssp CTTCCEEEES
T ss_pred CCCCCEEEEC
Confidence 2445544443
No 248
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.32 E-value=0.0021 Score=69.17 Aligned_cols=71 Identities=17% Similarity=0.277 Sum_probs=44.5
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec-hhHhHHhhhccCCccchhhhHHHHHHHhcCCCcEEEecCCCC
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM-LEKNLKKKLADNSIWNVDDGINILASRLQHKKVLLVIDDVVD 291 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~ 291 (1000)
.+++.|+|++|+||||||.+++.. . . ..+.|+.. ..+.. ... ..+.+.....+.+.+...+ +||+|++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~-G-~~VlyIs~~~eE~v----~~~-~~~le~~l~~i~~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-L-G-GKDKYATVRFGEPL----SGY-NTDFNVFVDDIARAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-H-H-TTSCCEEEEBSCSS----TTC-BCCHHHHHHHHHHHHHHCS-EEEEECCTT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-C-C-CCEEEEEecchhhh----hhh-hcCHHHHHHHHHHHHhhCC-EEEEecccc
Confidence 457789999999999999999876 1 1 12334432 11100 000 0334555566677776666 999999965
Q ss_pred H
Q 001889 292 I 292 (1000)
Q Consensus 292 ~ 292 (1000)
.
T Consensus 194 L 194 (331)
T 2vhj_A 194 V 194 (331)
T ss_dssp T
T ss_pred c
Confidence 3
No 249
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.23 E-value=0.011 Score=73.04 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=36.7
Q ss_pred cccccchhhHHHhhcccCC------CCCCCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 189 KKLVGIDSRLKELRSLIDG------GPNDDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..++|.+..++.+...+.. ........+.++|++|+|||++|+++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4588998888776654431 1112345789999999999999999998773
No 250
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.14 E-value=0.018 Score=64.45 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
..+.++|++|+|||++|+++++.+...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458899999999999999999877433
No 251
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.09 E-value=0.0046 Score=71.37 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=39.0
Q ss_pred cccccccchhhHHHhhccc---CCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 187 VLKKLVGIDSRLKELRSLI---DGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 187 ~~~~~vGr~~~l~~l~~~L---~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
....++|.+..++.+..++ ..+. ...+-+.++|++|+|||+||+++++.+...
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~-~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKK-MAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTC-CTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCC-CCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 3578999998877654433 2222 233568899999999999999999987643
No 252
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.01 E-value=0.019 Score=69.95 Aligned_cols=152 Identities=14% Similarity=0.187 Sum_probs=81.1
Q ss_pred ccccccchhhHHHhhcccCCCC----------CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 188 LKKLVGIDSRLKELRSLIDGGP----------NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
-..+.|.+...++|...+...- ....+-|.++|++|.|||.||+++++.....|- .....+...
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~----~v~~~~l~s-- 549 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI----SIKGPELLT-- 549 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEE----ECCHHHHHT--
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceE----Eeccchhhc--
Confidence 3467788888888776654210 122355889999999999999999987654332 112222111
Q ss_pred hccCCccchhhhHHHHHHHh-cCCCcEEEecCCCCHH----------------HHHHHhcCcCCCCCCceE-EE-EeCCc
Q 001889 258 LADNSIWNVDDGINILASRL-QHKKVLLVIDDVVDIK----------------QLEYLAGKREWFGSGSKI-II-TSRDE 318 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~~~gsrI-Ii-TTR~~ 318 (1000)
.-....+..+..+.+.- +..+.+|++|+++... .+..|+...+.......| +| ||-..
T Consensus 550 ---~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p 626 (806)
T 3cf2_A 550 ---MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 626 (806)
T ss_dssp ---TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCS
T ss_pred ---cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCc
Confidence 11112222333333333 4578999999997421 133344333322332223 33 44433
Q ss_pred c-----hhcccCCCceEecCCCChHHHHHHHHHhh
Q 001889 319 H-----LLKTHGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 319 ~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
. ++.....++.+.++..+.++-.++|..+.
T Consensus 627 ~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred hhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2 22222456788888888888888887665
No 253
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.89 E-value=0.01 Score=64.43 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=28.4
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh-cccceEEEEe
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS-MNLKGVVFLP 248 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~ 248 (1000)
.+.+.|+|++|+|||+||.++++... ..-..+.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46788999999999999999999876 5444445554
No 254
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.87 E-value=0.012 Score=58.62 Aligned_cols=102 Identities=18% Similarity=0.078 Sum_probs=55.4
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhH-------hHHhhhc-------cC----------Cccchhhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEK-------NLKKKLA-------DN----------SIWNVDDG 269 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~-------~~~~~~~-------~~----------~~~~~~~~ 269 (1000)
..|-|++-.|.||||.|-.++-+...+=..+.++..+.. ....... .. ........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 356666667799999999888776555444445432221 0111110 00 00111233
Q ss_pred HHHHHHHhcCCC-cEEEecCCCC--------HHHHHHHhcCcCCCCCCceEEEEeCCc
Q 001889 270 INILASRLQHKK-VLLVIDDVVD--------IKQLEYLAGKREWFGSGSKIIITSRDE 318 (1000)
Q Consensus 270 ~~~i~~~L~~k~-~LlVLDdv~~--------~~~l~~l~~~~~~~~~gsrIIiTTR~~ 318 (1000)
...+++.+.+.+ =|||||++.. .+++-.+... ......||||+|+.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCC
Confidence 445566665544 4999999843 2332222222 24667899999984
No 255
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.74 E-value=0.03 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHHh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.+|+|.|++|+||||+|+.+ .+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 37899999999999999999 443
No 256
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.74 E-value=0.33 Score=54.01 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=36.0
Q ss_pred CCCCCCCCCeecCCCCCCCCCCcc-cccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEEc
Q 001889 659 SLSGLCSLTKLDLSDCNIQEGAIP-RDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELELE 720 (1000)
Q Consensus 659 ~l~~l~~L~~L~Ls~~~l~~~~ip-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~ 720 (1000)
.+.++.+|+.+.+..+ +.. ++ ..+..+++|+.+.+.++.++.++. .+.+|.+|+.+.|.
T Consensus 258 aF~~~~~l~~i~l~~~-i~~--i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKT--VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSE--ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccceeehhcccccccc-cee--ccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 3455666776666433 211 22 345667777777777777776654 45677777777764
No 257
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.68 E-value=0.047 Score=53.97 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.5
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 258
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.67 E-value=0.048 Score=60.95 Aligned_cols=124 Identities=17% Similarity=0.221 Sum_probs=75.5
Q ss_pred cCCCCCCcEEEeeCCCCCcccC-ccccCcCCcceeecccccccCC-CccccCCCCCcEEEccCCCCCCCCCCCccccCcc
Q 001889 577 INGLKSLKTLCLSGCSELENVP-ENMEKIESLEELDISGTAIRQP-PSSIFLMKNLKELSFRGCKGPPSSTSCSWRFPFN 654 (1000)
Q Consensus 577 i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~c~~~~~~~~~~~~~p~~ 654 (1000)
+..+.+|+.+.+.. .+..++ ..+.++.+|+.+.+..+ ++.+ ...+..+.+|+.+.+...-..
T Consensus 213 f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~------------- 276 (379)
T 4h09_A 213 FSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKT------------- 276 (379)
T ss_dssp TTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSE-------------
T ss_pred cccccccceeeecc--ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccccee-------------
Confidence 44566677776653 233333 33566777777777654 4333 234455677777777432110
Q ss_pred cccCCCCCCCCCCeecCCCCCCCCCCc-ccccCCCCcCcEEeCCCCCCccccc-cccCCCCcCEEEE
Q 001889 655 LMLPSLSGLCSLTKLDLSDCNIQEGAI-PRDIGNLSSLEELYLSKNSFVSLPA-TISLLFKLEELEL 719 (1000)
Q Consensus 655 ~~~~~l~~l~~L~~L~Ls~~~l~~~~i-p~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L 719 (1000)
.-...+.++.+|+.+.+.++.+.. + ...+..+.+|+.+.|.. +++.++. .+.+|++|+.+.|
T Consensus 277 i~~~aF~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 277 VPYLLCSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccccccccce--ehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence 011356788899999988776643 3 34677889999999864 3666654 4566666665554
No 259
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.63 E-value=0.029 Score=54.05 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=73.9
Q ss_pred cccEEEcC--------------cccccccchhHHHHHHHHcCCCeEEecCCCCC-------C-CCCchHHHHHHHhhcce
Q 001889 13 TYDAFLSF--------------RGADTRKSFTSHLYAALNGKGIYVFKDDKELE-------R-GDSISPRLLKAIEDSRV 70 (1000)
Q Consensus 13 ~~dvFis~--------------~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~-------~-g~~~~~~l~~ai~~s~~ 70 (1000)
+--+||+| +.+|. ...+.|...-....+-.|.|..+.. . -+.|-..|.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 33478888 45565 5567777777776777788876542 2 24688899999999999
Q ss_pred eeeecccccccchhhHHHHHHHH-HhhhcCCCCcEEEEEEeecC-Chhhhhccch
Q 001889 71 SIIVFSQNYASSTWCLDELVKIV-QCKNKNDHRQMVFPIFYDVE-PTVVRKQARS 123 (1000)
Q Consensus 71 ~i~v~S~~y~~s~wc~~El~~~~-~~~~~~~~~~~vipif~~v~-ps~vr~q~g~ 123 (1000)
+|+++|++...|.|-.+|+..++ ++ +..||-|..+-+ -++++.-.|+
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~~~------~~PII~Vy~~~~~~~~i~~~~g~ 131 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIGTK------GLPVIVIYPDYDKKSDIVDSNGN 131 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTTTT------CCCEEEEETTCCSGGGTBCTTSC
T ss_pred EEEEEecCccccchhHHHHHHHHHhc------CCcEEEEECCccccchhhhcccc
Confidence 99999999999999999998877 32 556787765533 2344433344
No 260
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.63 E-value=0.011 Score=60.50 Aligned_cols=34 Identities=26% Similarity=0.169 Sum_probs=26.3
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
.-.+++|.|.+|+||||||+.++. ..-..++|+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 345899999999999999999987 2224566665
No 261
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.63 E-value=0.023 Score=58.23 Aligned_cols=105 Identities=15% Similarity=0.060 Sum_probs=58.8
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe-chhHhHHhhhc-cC-------CccchhhhHHHHHHHhcCC-C
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP-MLEKNLKKKLA-DN-------SIWNVDDGINILASRLQHK-K 281 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~-~~~~~~~~~~~-~~-------~~~~~~~~~~~i~~~L~~k-~ 281 (1000)
...++.|+|..|+||||+|..++++...+-..+.++. ........+.. .. ......+..+.+.+.+.+. .
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3468999999999999999999888766544444442 22111111110 00 0111223333344333333 4
Q ss_pred cEEEecCCCC--HHHHHHHhcCcCCCCCCceEEEEeCCcc
Q 001889 282 VLLVIDDVVD--IKQLEYLAGKREWFGSGSKIIITSRDEH 319 (1000)
Q Consensus 282 ~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 319 (1000)
-+||+|.+.. .++++.+....+ .|-.||+|-++.+
T Consensus 91 dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 91 KVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp CEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred CEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 4999999854 345444433221 3678999998643
No 262
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.62 E-value=0.027 Score=70.35 Aligned_cols=51 Identities=29% Similarity=0.444 Sum_probs=37.6
Q ss_pred cccccchhhHHHhhcccCC------CCCCCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 189 KKLVGIDSRLKELRSLIDG------GPNDDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
..++|.+..++.+...+.. .+......+.|+|++|+|||++|+++++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4578999888877655532 11123457899999999999999999987643
No 263
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.62 E-value=0.018 Score=63.63 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=65.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccce-EEEEechhHhHHhh----h-ccCCccchhhhHHHHHHHhcCCCcEEEec
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKG-VVFLPMLEKNLKKK----L-ADNSIWNVDDGINILASRLQHKKVLLVID 287 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~i~~~L~~k~~LlVLD 287 (1000)
.+++|.|+.|.|||||.+.+...+...... ++.+.+..+..... . ......+.......+...|...+=+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 499999999999999999998866544323 23332211111000 0 00000111234557888899999999999
Q ss_pred CCCCHHHHHHHhcCcCCCCCCceEEEEeCCcchh
Q 001889 288 DVVDIKQLEYLAGKREWFGSGSKIIITSRDEHLL 321 (1000)
Q Consensus 288 dv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 321 (1000)
.+.+.+.++.+.... ..|..||+||-+....
T Consensus 204 Ep~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 204 EMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999887766644332 2466688888765443
No 264
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.56 E-value=0.02 Score=59.08 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=26.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
-.+++|.|.+|+|||||++.++......-..+.|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 358999999999999999999865543333445553
No 265
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.43 E-value=0.025 Score=59.78 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=61.7
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec--hhHhHHhh---h--ccCCccchhhhHHHHHHHhcCCCcEE
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM--LEKNLKKK---L--ADNSIWNVDDGINILASRLQHKKVLL 284 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~~~~~~---~--~~~~~~~~~~~~~~i~~~L~~k~~Ll 284 (1000)
.-.+++|+|+.|.|||||++.+...+...+.+.+++.. +....... . ..... +.......+.+.|..++=+|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl-~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGE-DTKSFADALRAALREDPDVI 102 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTT-TBSCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCC-CHHHHHHHHHHHHhhCCCEE
Confidence 34689999999999999999998766544344444321 10000000 0 00000 11223456777777788899
Q ss_pred EecCCCCHHHHHHHhcCcCCCCCCceEEEEeCCcc
Q 001889 285 VIDDVVDIKQLEYLAGKREWFGSGSKIIITSRDEH 319 (1000)
Q Consensus 285 VLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 319 (1000)
++|...+.+....+.... ..|..|++||-+..
T Consensus 103 llDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 103 FVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp EESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred EeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 999998766655443321 24667888887654
No 266
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.25 E-value=0.059 Score=58.64 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=28.2
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
...++++|+|.+|+||||++..++..+...-..+.++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4568999999999999999999988765543333343
No 267
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.24 E-value=0.071 Score=58.69 Aligned_cols=94 Identities=19% Similarity=0.146 Sum_probs=53.5
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechh---HhHHhhh----cc---CCccchh
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLE---KNLKKKL----AD---NSIWNVD 267 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~---~~~~~~~----~~---~~~~~~~ 267 (1000)
..+|..+|..+.-..-+++.|.|++|+||||||..++......=..++|++.-. ....... .. ....+.+
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e 125 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHH
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHH
Confidence 445666665211134579999999999999999999887654434566775211 1111110 00 1112334
Q ss_pred hhHHHHHHHhc-CCCcEEEecCCCC
Q 001889 268 DGINILASRLQ-HKKVLLVIDDVVD 291 (1000)
Q Consensus 268 ~~~~~i~~~L~-~k~~LlVLDdv~~ 291 (1000)
+....+...++ .+.-++|+|.+..
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhh
Confidence 44444444443 4566888888743
No 268
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.14 E-value=0.064 Score=57.70 Aligned_cols=36 Identities=25% Similarity=0.131 Sum_probs=27.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
.++++++|.+|+||||++..++..+..+-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 679999999999999999999887655433344443
No 269
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.07 E-value=0.0082 Score=74.16 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=82.1
Q ss_pred ccccccchhhHHHhhcccCCCC----------CCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhh
Q 001889 188 LKKLVGIDSRLKELRSLIDGGP----------NDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKK 257 (1000)
Q Consensus 188 ~~~~vGr~~~l~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 257 (1000)
...++|.+...+.|...+.... -...+.+.++|++|+||||||++++......|-.+ . ..+.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v---~-~~~l---- 547 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI---K-GPEL---- 547 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC---C-CSSS----
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE---e-chHh----
Confidence 4567888888887776654210 02235688999999999999999999875443221 0 0000
Q ss_pred hccCCccchhhhHHHHHHHh-cCCCcEEEecCCCCH----------------HHHHHHhcCcCCCC--CCceEEEEeCCc
Q 001889 258 LADNSIWNVDDGINILASRL-QHKKVLLVIDDVVDI----------------KQLEYLAGKREWFG--SGSKIIITSRDE 318 (1000)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~~~--~gsrIIiTTR~~ 318 (1000)
..............+.+.. ...+.++++|+++.. ..+..++..++... .+..||.||...
T Consensus 548 -~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~ 626 (806)
T 1ypw_A 548 -LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 626 (806)
T ss_dssp -TTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSC
T ss_pred -hhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCc
Confidence 0000111112222222222 335678999998642 12345555544222 233455566533
Q ss_pred chhcc-----cCCCceEecCCCChHHHHHHHHHhh
Q 001889 319 HLLKT-----HGMDEVYKPSSLNYDEAFQLFNMKA 348 (1000)
Q Consensus 319 ~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 348 (1000)
+.+.. ...+..+.++..+.++..+++..+.
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 22211 1233466777788888888886655
No 270
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.03 E-value=0.06 Score=59.41 Aligned_cols=50 Identities=26% Similarity=0.224 Sum_probs=34.8
Q ss_pred HHHhhcccC-CCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 198 LKELRSLID-GGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 198 l~~l~~~L~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
...|..+|. .+- ..-+++.|+|.+|+||||||..++......=..++|++
T Consensus 46 ~~~LD~~Lg~GGl-~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGL-PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344555554 221 34568999999999999999999876654444566765
No 271
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.03 E-value=0.046 Score=55.39 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=46.2
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcccceEEEEe---chhHhHHh----------hhccCCccchhhhHHHHHHHhcCCC
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP---MLEKNLKK----------KLADNSIWNVDDGINILASRLQHKK 281 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~---~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~L~~k~ 281 (1000)
+|.|.|++|+||||.|+.++.++. ...++ .+++.... .......-..+-....+.+++....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~ 76 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHG 76 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCC
Confidence 477899999999999999987652 22333 12222111 0111112222334567778886655
Q ss_pred cEEEecCC-CCHHHHHHH
Q 001889 282 VLLVIDDV-VDIKQLEYL 298 (1000)
Q Consensus 282 ~LlVLDdv-~~~~~l~~l 298 (1000)
. +|||+. .+..|.+.|
T Consensus 77 ~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 77 N-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp C-EEEESCCCSHHHHHHH
T ss_pred c-eEecCCchhHHHHHHH
Confidence 4 689998 456665555
No 272
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.02 E-value=0.025 Score=57.15 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=24.4
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
....+|+|.|..|.||||+++.+...+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999987664
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.95 E-value=0.011 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
++|.|.|++|+||||+|+++..++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47899999999999999999987643
No 274
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.88 E-value=0.04 Score=61.44 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=61.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEE-EEechhHhHHh-h---hcc--CCccchhhhHHHHHHHhcCCCcEE
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVV-FLPMLEKNLKK-K---LAD--NSIWNVDDGINILASRLQHKKVLL 284 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-~~~~~~~~~~~-~---~~~--~~~~~~~~~~~~i~~~L~~k~~Ll 284 (1000)
...+++|+|+.|.||||+++.+...+.....+.+ ++..-.+.... . ... .. .+.......++..|...+=+|
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g-~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVG-EDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBT-TTBSCSHHHHHHHTTSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecC-CCHHHHHHHHHHHhhhCcCEE
Confidence 3468999999999999999999886654433433 33321110000 0 000 00 011233557788888888899
Q ss_pred EecCCCCHHHHHHHhcCcCCCCCCceEEEEeCCc
Q 001889 285 VIDDVVDIKQLEYLAGKREWFGSGSKIIITSRDE 318 (1000)
Q Consensus 285 VLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~ 318 (1000)
++|.+.+.+.+....... ..|..||.|+-+.
T Consensus 214 lldE~~d~e~~~~~l~~~---~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 214 FVGEMRDLETVETALRAA---ETGHLVFGTLHTN 244 (372)
T ss_dssp EESCCCSHHHHHHHHHHH---TTTCEEEECCCCC
T ss_pred EECCCCCHHHHHHHHHHH---hcCCEEEEEECcc
Confidence 999998777655443321 3455677776543
No 275
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.84 E-value=0.017 Score=57.51 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=50.3
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe-chhHhH-Hhh--------hccCCccchhhhHHHHHHHhcCCCcE
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP-MLEKNL-KKK--------LADNSIWNVDDGINILASRLQHKKVL 283 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~-~~~~~~-~~~--------~~~~~~~~~~~~~~~i~~~L~~k~~L 283 (1000)
+++.|+|+.|+||||+|..++.+...+-..+.++. ...... ..+ .......+.. .+.+.+.++.-+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~~~dv 79 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEEDTRG 79 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGG----GGGGGCCTTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHH----HHHHHhcCCCCE
Confidence 47889999999999999777766543322233332 211100 000 0000011111 122223334569
Q ss_pred EEecCCCCH--HHHHHHhcCcCCCCCCceEEEEeCCc
Q 001889 284 LVIDDVVDI--KQLEYLAGKREWFGSGSKIIITSRDE 318 (1000)
Q Consensus 284 lVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 318 (1000)
|++|.+... ++++.+....+ .|..|++|.++.
T Consensus 80 viIDE~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 80 VFIDEVQFFNPSLFEVVKDLLD---RGIDVFCAGLDL 113 (184)
T ss_dssp EEECCGGGSCTTHHHHHHHHHH---TTCEEEEEEESB
T ss_pred EEEECcccCCHHHHHHHHHHHH---CCCCEEEEeecc
Confidence 999998543 34444432222 367899988854
No 276
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.82 E-value=0.083 Score=53.86 Aligned_cols=84 Identities=15% Similarity=0.231 Sum_probs=48.3
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe---chhHhHHh----------hhccCCccchhhhHHHHHHHh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP---MLEKNLKK----------KLADNSIWNVDDGINILASRL 277 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~---~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~L 277 (1000)
.+.++|.|.|++|.||||.|+.++.++. ...++ .+++.... ....-..-..+.....+.+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g-----~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l 101 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH-----FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM 101 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC-----CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC-----CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999987652 22332 12221111 011111112233345555555
Q ss_pred c---CCCcEEEecCC-CCHHHHHHHh
Q 001889 278 Q---HKKVLLVIDDV-VDIKQLEYLA 299 (1000)
Q Consensus 278 ~---~k~~LlVLDdv-~~~~~l~~l~ 299 (1000)
. ...--+|||+. .+..|.+.|.
T Consensus 102 ~~~~~~~~g~ilDGfPRt~~Qa~~l~ 127 (217)
T 3umf_A 102 IKLVDKNCHFLIDGYPRELDQGIKFE 127 (217)
T ss_dssp HHHTTTCSEEEEETBCSSHHHHHHHH
T ss_pred hhccccccCcccccCCCcHHHHHHHH
Confidence 3 23445789998 4567766654
No 277
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.73 E-value=0.12 Score=55.74 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=28.3
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
....+++|+|.+|+||||++..++..+...-..+.++
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 3567999999999999999999998776543334443
No 278
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.65 E-value=0.029 Score=57.05 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=24.6
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
....+|+|.|+.|.|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999988665
No 279
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.64 E-value=0.076 Score=58.63 Aligned_cols=51 Identities=27% Similarity=0.274 Sum_probs=35.5
Q ss_pred HHHhhcccC-CCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEec
Q 001889 198 LKELRSLID-GGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPM 249 (1000)
Q Consensus 198 l~~l~~~L~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 249 (1000)
...|..+|. .+- ..-+++.|.|.+|+||||||..++......-..++|++.
T Consensus 48 ~~~LD~~Lg~GGl-~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 48 SLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp CHHHHHHTSSSSE-ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 445555554 221 344689999999999999999988776554446777763
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.62 E-value=0.017 Score=56.45 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=22.3
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.+|+|.|+.|+||||+|+.+..++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999988764
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.44 E-value=0.021 Score=57.57 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.++|+|+|+.|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998763
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.42 E-value=0.02 Score=56.79 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.+.|.|+|+.|+||||+|+.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 283
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.36 E-value=0.024 Score=63.17 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=33.8
Q ss_pred ccccchhhHHHhhcccC------------CCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 190 KLVGIDSRLKELRSLID------------GGPNDDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 190 ~~vGr~~~l~~l~~~L~------------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.++|.+..++.+...+. .......+.|.++|++|+|||++|+++++....
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35666666666554441 000023456889999999999999999987743
No 284
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.32 E-value=0.1 Score=56.91 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.2
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
....+++|+|+.|+||||+++.++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346799999999999999999998766543
No 285
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.21 E-value=0.12 Score=58.74 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.0
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
...++|.++|.+|+||||+|..++..+..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 457899999999999999999999877665
No 286
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.18 E-value=0.033 Score=61.03 Aligned_cols=100 Identities=14% Similarity=0.212 Sum_probs=58.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhcc-CCcc--chhhhHHHHHHHhcCCCcEEEecCCC
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLAD-NSIW--NVDDGINILASRLQHKKVLLVIDDVV 290 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~i~~~L~~k~~LlVLDdv~ 290 (1000)
..++|+|+.|.|||||++.+...+.. -.+.+.+....+........ .... ........+...|..++=+|++|.+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 47999999999999999998865433 34556665432211000000 0000 12233456777788888899999998
Q ss_pred CHHHHHHHhcCcCCCCCCceEEEEeCC
Q 001889 291 DIKQLEYLAGKREWFGSGSKIIITSRD 317 (1000)
Q Consensus 291 ~~~~l~~l~~~~~~~~~gsrIIiTTR~ 317 (1000)
+.+.++.+... . ..+..+|+||-.
T Consensus 251 ~~e~~~~l~~~-~--~g~~tvi~t~H~ 274 (330)
T 2pt7_A 251 SSEAYDFYNVL-C--SGHKGTLTTLHA 274 (330)
T ss_dssp STHHHHHHHHH-H--TTCCCEEEEEEC
T ss_pred hHHHHHHHHHH-h--cCCCEEEEEEcc
Confidence 75555544322 1 112236666654
No 287
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.07 E-value=0.068 Score=59.24 Aligned_cols=50 Identities=26% Similarity=0.238 Sum_probs=34.7
Q ss_pred HHHhhcccC-CCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 198 LKELRSLID-GGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 198 l~~l~~~L~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
...|..+|. .+- ..-+++.|.|.+|+||||||..++......-..++|++
T Consensus 59 ~~~LD~~Lg~GGl-~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGI-PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCc-cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 445555554 211 33458899999999999999998876654444677776
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.04 E-value=0.048 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.+|.|.|+.|+||||+|+.+..++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999988764
No 289
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.01 E-value=0.075 Score=56.95 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=27.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcc--cceEEEEe
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMN--LKGVVFLP 248 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~ 248 (1000)
++-|+|++|+||||||.+++.....+ =..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 68999999999999999888766554 24567776
No 290
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.01 E-value=0.055 Score=53.68 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.6
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
...+|.|.|++|.||||+|+.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999987754
No 291
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.90 E-value=0.031 Score=54.53 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..++|+|.|+.|.||||+|+.++.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998764
No 292
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.85 E-value=0.041 Score=54.83 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.1
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+|.|.|++|+||||+|+.+...+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999988763
No 293
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.81 E-value=0.034 Score=58.38 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=24.4
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
....+|+|.|+.|.||||+|+.+...+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45678999999999999999999886653
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.81 E-value=0.056 Score=54.43 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=24.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
...+|+|.|+.|.||||||+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998775
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.71 E-value=0.023 Score=56.50 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=23.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLK 242 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 242 (1000)
|.|.|+|+.|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 46889999999999999999877655443
No 296
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.70 E-value=0.038 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHH
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
...+++|.|+.|.|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999764
No 297
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.70 E-value=0.054 Score=58.81 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=28.4
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
++.|+|+|.|-|||||||.|..++.-+...=..+..++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56799999999999999999888776655433444443
No 298
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.68 E-value=0.028 Score=55.54 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.+.|.|.|++|.||||+|+.++..+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999988763
No 299
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.68 E-value=0.036 Score=54.49 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEEecCCCChhHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
.+|.|.|++|.||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 300
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.67 E-value=0.034 Score=61.09 Aligned_cols=28 Identities=25% Similarity=0.140 Sum_probs=23.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
-..++|+|.+|.|||||++.+.+.+...
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 4589999999999999999998876543
No 301
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.66 E-value=0.027 Score=55.07 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.+|+|+|+.|.||||+|+.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988654
No 302
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.63 E-value=0.045 Score=62.13 Aligned_cols=30 Identities=33% Similarity=0.578 Sum_probs=24.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcccceE
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMNLKGV 244 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 244 (1000)
.++|+|..|+||||||+.+......++..+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 588999999999999999998766554333
No 303
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.62 E-value=0.27 Score=55.51 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=25.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
..++|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999998876654
No 304
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.44 E-value=0.043 Score=57.64 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=22.3
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
++|.|.|+.|+||||||++++.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 305
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.44 E-value=0.061 Score=57.67 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=25.0
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
....+|+|.|..|.||||||+.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999998876654
No 306
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.43 E-value=0.04 Score=55.43 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.|+|.|+.|+||||+|+.++..+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999987653
No 307
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.43 E-value=0.17 Score=50.66 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
....+|+|+||+|.||+|+|..+.+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 345799999999999999999887655
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.42 E-value=0.04 Score=54.15 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.|.|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 309
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.39 E-value=0.048 Score=59.61 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=26.3
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
+....|.|+|++|.||||+|+.++..+...|
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4566799999999999999999998776555
No 310
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.35 E-value=0.046 Score=54.61 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+|+|.|+.|+||||+|+.++..+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988663
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.34 E-value=0.053 Score=54.59 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
...+|+|.|+.|.||||||+.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998776
No 312
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.29 E-value=0.068 Score=52.09 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
..++++|.|..|.|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 45789999999999999999999877654
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.28 E-value=0.046 Score=54.32 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=23.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.+|.|.|++|+||||+|+.+..++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987753
No 314
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.24 E-value=0.13 Score=56.55 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=33.2
Q ss_pred HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc------ccceEEEEe
Q 001889 200 ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM------NLKGVVFLP 248 (1000)
Q Consensus 200 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 248 (1000)
.|..+|..+- ..-.++.|+|.+|+||||||..++..... .-..++|++
T Consensus 110 ~LD~~LgGGl-~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGI-ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSB-CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 4455554222 44579999999999999999998876432 234567776
No 315
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.24 E-value=0.036 Score=54.91 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+|+|.|++|.||||+|+.+..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988764
No 316
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.19 E-value=0.041 Score=55.44 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
..+|+|.|+.|.||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 317
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.15 E-value=0.043 Score=54.25 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999987653
No 318
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.12 E-value=0.055 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
..+|+|.|+.|.||||+|+.+...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.07 E-value=0.07 Score=53.05 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=24.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
.+++|.|+.|.|||||++.+... ..+.+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH----SSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcc----cCCeEEEc
Confidence 47899999999999999999753 33445554
No 320
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.03 E-value=0.078 Score=53.79 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
..+|+|.|+.|+||||+|+.+...+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35899999999999999999998876543
No 321
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.02 E-value=0.59 Score=51.20 Aligned_cols=153 Identities=8% Similarity=-0.057 Sum_probs=92.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh-cccceEEEEechhHhHHhhhccCCccchhhhHHHHHH-HhcCCCcEEEecCCC
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS-MNLKGVVFLPMLEKNLKKKLADNSIWNVDDGINILAS-RLQHKKVLLVIDDVV 290 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~L~~k~~LlVLDdv~ 290 (1000)
.++..++|..|.||++.|+++...+. ..|+....+. +.. ..++.+..+.+.. -+.+++-++|+|+++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~----------~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-IDP----------NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCT----------TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ecC----------CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 45889999999999999999988654 3443321111 110 1233333333332 235667788999986
Q ss_pred C---HHHHHHHhcCcCCCCCCceEEEEeCC-------cchhcc-cCCCceEecCCCChHHHHHHHHHhhcccCCCChhHH
Q 001889 291 D---IKQLEYLAGKREWFGSGSKIIITSRD-------EHLLKT-HGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECV 359 (1000)
Q Consensus 291 ~---~~~l~~l~~~~~~~~~gsrIIiTTR~-------~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 359 (1000)
. .+..+.|........+++.+|++|.. ..+... .....+++..+++.++..+.+...+-..... -..
T Consensus 87 ~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~--i~~ 164 (343)
T 1jr3_D 87 NGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLE--LDD 164 (343)
T ss_dssp SCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCE--ECH
T ss_pred CCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCH
Confidence 5 24455555444333567777777643 123332 2233578999999999988887766433211 122
Q ss_pred HHHHHHHHHhCCCchHHHH
Q 001889 360 QLSERVLQYAGGLPVALEV 378 (1000)
Q Consensus 360 ~l~~~iv~~~~GlPLAl~~ 378 (1000)
+.+..+++.++|...++..
T Consensus 165 ~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 165 AANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHH
Confidence 5577788888888776654
No 322
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.02 E-value=0.058 Score=53.73 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHHh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.+|+|.|++|+||||+|+.+...+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 323
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.00 E-value=0.1 Score=56.98 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=32.5
Q ss_pred HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc------cceEEEEe
Q 001889 200 ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN------LKGVVFLP 248 (1000)
Q Consensus 200 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~ 248 (1000)
.|..+|..+- ..-.++.|+|.+|+||||||..++...... -..++|++
T Consensus 95 ~LD~~L~GGl-~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 95 ALDGLLAGGI-ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hHHHhcCCCC-CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3444453221 234589999999999999999988765332 24567776
No 324
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.98 E-value=0.042 Score=53.65 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
++|+|.|+.|+||||+|+.+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988764
No 325
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.98 E-value=0.053 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.6
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.+|+|.|++|+||||+|+.+..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 326
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.96 E-value=0.25 Score=55.72 Aligned_cols=36 Identities=25% Similarity=0.103 Sum_probs=28.0
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
..++|+++|.+|+||||++..++..+..+=..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468999999999999999999988766543334443
No 327
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.95 E-value=0.21 Score=57.18 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=34.1
Q ss_pred cchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc-cceEEEEe
Q 001889 193 GIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN-LKGVVFLP 248 (1000)
Q Consensus 193 Gr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 248 (1000)
|...-...|..++. +- ....++.|.|.+|+||||||..++...... =..++|++
T Consensus 182 ~i~tG~~~LD~~lg-Gl-~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 182 GVRTGFKELDQLIG-TL-GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp -CCCSCHHHHHHHC-CC-CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cccCCCHhhhhhcC-Cc-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 33333444555542 21 334589999999999999999998776543 23455554
No 328
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.93 E-value=0.089 Score=53.18 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=24.4
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
.+|+|.|+.|+||||+|+.+...+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5799999999999999999998876543
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.89 E-value=0.058 Score=53.53 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHH
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
....|+|+|+.|.||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999876
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.88 E-value=0.063 Score=54.05 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
....+|+|.|+.|.||||+|+.+++.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998764
No 331
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.87 E-value=0.061 Score=53.23 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
...|+|.|+.|.||||+|+.+..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 332
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.86 E-value=0.053 Score=55.03 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
..++++|+|+.|+|||||++.+...+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3468999999999999999999876643
No 333
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.86 E-value=0.06 Score=52.28 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.|+|.|+.|.||||+|+.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988764
No 334
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.82 E-value=0.045 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=18.6
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.+|.|.|+.|+||||+|+.+...+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 57999999999999999999876543
No 335
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.81 E-value=0.037 Score=61.07 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=35.0
Q ss_pred ccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 186 EVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 186 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.....++|.+...+.+...+... ...-|.|+|++|+|||+||+++++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~---~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDP---GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCG---GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCC---CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34567999988665543332221 122388999999999999999998664
No 336
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.79 E-value=0.14 Score=47.65 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=36.6
Q ss_pred eecCCCCCCCCCCcccccCCCCcCcEEeCCCCCCcccccc-ccCCCCcCEEEEcCCc
Q 001889 668 KLDLSDCNIQEGAIPRDIGNLSSLEELYLSKNSFVSLPAT-ISLLFKLEELELEDCK 723 (1000)
Q Consensus 668 ~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 723 (1000)
.++.+++++....+|..+ .++|+.|+|++|+|+.||.. +..+++|+.|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 566666666522366543 34688888888888888764 5677788888887765
No 337
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.78 E-value=0.11 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=18.4
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 001889 215 MIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
++.|.|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6779999999999999876543
No 338
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.75 E-value=0.067 Score=53.16 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+|+|.|+.|.||||+|+.+...+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 339
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.73 E-value=0.048 Score=55.15 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..++|+|+|++|+|||||++.+...+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988763
No 340
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.60 E-value=0.049 Score=54.18 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=22.7
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
++++|.|+.|+|||||++.+...+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 47899999999999999999876653
No 341
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.58 E-value=0.074 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+|+|.|++|+||||+|+.+...+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 342
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.54 E-value=0.076 Score=53.31 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHH
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
....+|+|.|+.|.||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
No 343
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.47 E-value=0.17 Score=54.86 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=28.9
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
.-.++.|.|.+|+||||||..++.....+-..++|++
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3458999999999999999998876554435667765
No 344
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.46 E-value=0.069 Score=54.81 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.+|+|+|+.|.||||+|+.+...+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987653
No 345
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.45 E-value=0.04 Score=63.71 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=36.2
Q ss_pred cccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 189 KKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 189 ~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+.++|.+..++.+...+..+ .-|.|+|++|+|||+||+++++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~-----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT-----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC-----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 46889998888877666432 3688999999999999999998663
No 346
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.39 E-value=0.062 Score=53.80 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=29.3
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
+..+..++... +..+.+.|+|++|.||||+|.++++.+.+
T Consensus 45 ~~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44455555432 33446899999999999999999987754
No 347
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.39 E-value=0.079 Score=55.00 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=27.3
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
-.++.|.|.+|+||||||..++......=..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 358999999999999999988766544434556654
No 348
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.33 E-value=0.078 Score=53.70 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.4
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
..+|+|.|+.|+||||+|+.+...+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999876543
No 349
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.33 E-value=0.55 Score=51.64 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=25.0
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
...+++|+|+.|+||||+++.++..+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 45799999999999999999999876543
No 350
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.30 E-value=0.073 Score=53.64 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q 001889 215 MIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
+|+|.|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 351
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.29 E-value=0.081 Score=53.47 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
....+|+|+|+.|.||||+|+.+...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999887643
No 352
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.29 E-value=0.092 Score=53.19 Aligned_cols=27 Identities=41% Similarity=0.500 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
...+|+|.|+.|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987654
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.29 E-value=0.082 Score=55.74 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=23.1
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 354
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.28 E-value=0.071 Score=54.52 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
...|.|.|++|.||||+|+.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988764
No 355
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.24 E-value=0.077 Score=52.77 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=21.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 356
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.23 E-value=0.074 Score=53.30 Aligned_cols=27 Identities=11% Similarity=0.363 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999987654
No 357
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.19 E-value=0.33 Score=49.69 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=45.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcccceEEEEe---chhHhHHh----------hhccCCccchhhhHHHHHHHhcCC-
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP---MLEKNLKK----------KLADNSIWNVDDGINILASRLQHK- 280 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~---~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~L~~k- 280 (1000)
.+||.|++|+||||+|+.+..++. + .+++ .+++.... ..........+.....+++++...
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g--~---~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~ 84 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG--I---PQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEAD 84 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--C---CEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGG
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC--C---CeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcc
Confidence 589999999999999999987653 1 1222 11221110 111112222233456677777541
Q ss_pred -CcEEEecCC-CCHHHHHHHh
Q 001889 281 -KVLLVIDDV-VDIKQLEYLA 299 (1000)
Q Consensus 281 -~~LlVLDdv-~~~~~l~~l~ 299 (1000)
.--+|||+. .+..|.+.|.
T Consensus 85 ~~~g~ILDGfPRt~~Qa~~L~ 105 (230)
T 3gmt_A 85 CANGYLFDGFPRTIAQADAMK 105 (230)
T ss_dssp GTTCEEEESCCCSHHHHHHHH
T ss_pred cCCCeEecCCCCcHHHHHHHH
Confidence 113578998 5667776664
No 358
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.11 E-value=0.077 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.6
Q ss_pred EEEEEEecCCCChhHHHHHHHHHh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.+++|.|+.|.|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 359
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.11 E-value=0.13 Score=52.71 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.-.+++|+|+.|.|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998744
No 360
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.09 E-value=0.1 Score=57.35 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.-+.++|.|.+|+|||+|+..+++.+..
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 3457899999999999999999987654
No 361
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.03 E-value=0.11 Score=53.88 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=27.6
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhc------ccceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISM------NLKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 248 (1000)
.-.+++|+|++|+||||||+.++..... .-..++|+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3458999999999999999999875322 134566665
No 362
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.00 E-value=0.081 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
..+++|.|+.|.||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 363
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.98 E-value=0.37 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
-.+++|.|+.|.|||||.+.++.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 35899999999999999999875
No 364
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.91 E-value=0.074 Score=55.47 Aligned_cols=26 Identities=19% Similarity=0.036 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
....|+|.|++|+||||+|+.+.+++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.88 E-value=0.12 Score=55.37 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
....+|.|.|++|+||||+|+.+..++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998765
No 366
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.85 E-value=0.089 Score=54.89 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+|+|.|+.|.|||||++.++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999997653
No 367
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.84 E-value=0.079 Score=54.25 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
...|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 368
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.84 E-value=0.15 Score=58.44 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=28.0
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhccc-ceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNL-KGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~ 248 (1000)
.-.++.|.|.+|+||||||..++..+...- ..++|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345899999999999999999988765432 2455654
No 369
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.77 E-value=0.11 Score=58.83 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=24.4
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhccc
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNL 241 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 241 (1000)
.+-|.++|++|+||||+|++++..+...|
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 35688999999999999999998775544
No 370
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.72 E-value=0.096 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.|+|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 371
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.71 E-value=0.088 Score=54.13 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
...|+|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998765
No 372
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.67 E-value=0.091 Score=53.02 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.1
Q ss_pred EEEEEEecCCCChhHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 373
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.67 E-value=0.097 Score=52.34 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
...+|+|.|+.|.||||+|+.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998763
No 374
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.66 E-value=0.099 Score=52.14 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.2
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
+|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 375
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.60 E-value=0.078 Score=51.91 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.8
Q ss_pred cEEEEEEecCCCChhHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVV 233 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v 233 (1000)
..+++|+|+.|.|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999963
No 376
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.59 E-value=0.078 Score=55.45 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..|+|+|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998764
No 377
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.59 E-value=0.11 Score=52.98 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=25.3
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
...++|+|+|.+|+|||||+..+.......
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 356899999999999999999998776444
No 378
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.57 E-value=0.093 Score=62.64 Aligned_cols=51 Identities=14% Similarity=0.386 Sum_probs=41.0
Q ss_pred cccccccccchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 185 SEVLKKLVGIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 185 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
+.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK-----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhccccccCC-----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 344578999999888888777543 478999999999999999999866443
No 379
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.51 E-value=0.082 Score=53.61 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.5
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhc
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
+|+|.|+.|.||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
No 380
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.46 E-value=0.098 Score=54.85 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+|+|.|+.|.||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999997764
No 381
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.44 E-value=0.13 Score=56.18 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=28.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
-.++.|.|.+|+||||||..++.....+=..++|++
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 458999999999999999999877654434555654
No 382
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.43 E-value=0.15 Score=52.04 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
.....|+|+|.+|+|||||+..+.......
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 346789999999999999999998765443
No 383
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.42 E-value=0.16 Score=55.07 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
....+|||.|+.|.||||||+.+...+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5677999999999999999999887654
No 384
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.39 E-value=0.52 Score=53.11 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=27.6
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
..++++|+|.+|+||||++..++..+..+-..+.++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457899999999999999999998776543333333
No 385
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.36 E-value=0.1 Score=53.16 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.33 E-value=0.13 Score=52.16 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
...+|.|.|+.|.||||+|+.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999988765
No 387
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.33 E-value=0.031 Score=55.94 Aligned_cols=13 Identities=15% Similarity=0.008 Sum_probs=5.9
Q ss_pred ccCCCCcCEEEEc
Q 001889 708 ISLLFKLEELELE 720 (1000)
Q Consensus 708 i~~l~~L~~L~L~ 720 (1000)
+..-+.|+.|+++
T Consensus 153 L~~N~tL~~L~l~ 165 (197)
T 1pgv_A 153 IEENESLLRVGIS 165 (197)
T ss_dssp HHHCSSCCEEECC
T ss_pred HHhCCCcCeEecc
Confidence 3334445555544
No 388
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.32 E-value=0.12 Score=53.70 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHH
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
.-.+++|.|+.|.|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345899999999999999999884
No 389
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.31 E-value=0.09 Score=52.87 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.0
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
++++|+|+.|+|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987553
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.30 E-value=0.13 Score=50.54 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..+|+|.|+.|.||||+|+.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999988764
No 391
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.18 E-value=0.049 Score=54.48 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=42.8
Q ss_pred CCCCCCCCeecCCCCCCCCC---CcccccCCCCcCcEEeCCCCCCc-----cccccccCCCCcCEEEEcCCc
Q 001889 660 LSGLCSLTKLDLSDCNIQEG---AIPRDIGNLSSLEELYLSKNSFV-----SLPATISLLFKLEELELEDCK 723 (1000)
Q Consensus 660 l~~l~~L~~L~Ls~~~l~~~---~ip~~l~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 723 (1000)
+..-+.|+.|+|++|.+.+. .+-..+..-+.|+.|+|++|.|. .|-..+..-..|+.|+|++|.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 44456778888888776532 23334445578888888888776 344556666778888888754
No 392
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.14 E-value=0.12 Score=51.95 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=22.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+|+|.|+.|.||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988764
No 393
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.11 E-value=0.14 Score=53.39 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
...+|+|.|+.|.||||||+.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 394
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.00 E-value=0.12 Score=56.18 Aligned_cols=25 Identities=32% Similarity=0.301 Sum_probs=22.7
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
++|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 395
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.98 E-value=0.21 Score=55.29 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=25.0
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
+...+|+|+|.+|+|||||+..+...+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999998876644
No 396
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.96 E-value=0.11 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=22.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHHh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.+|+|.|+.|+||||+|+.+...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998876
No 397
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.94 E-value=0.18 Score=54.33 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=24.7
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
...+++|+|+.|+||||+++.++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45699999999999999999998766543
No 398
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.93 E-value=0.19 Score=54.24 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=28.9
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
...++|+|+|-||+||||+|..++..+...=..++.++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45789999999999999999999887765533444444
No 399
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.91 E-value=0.14 Score=55.36 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.3
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
....+|+|.|+.|.|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4567999999999999999999987654
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.88 E-value=0.13 Score=52.41 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.7
Q ss_pred EEEEEEecCCCChhHHHHHHHHHh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
..|.|.|++|.||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 401
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.77 E-value=0.22 Score=52.21 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999987766
No 402
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.75 E-value=0.22 Score=52.52 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=27.0
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
++|+|.|-||+||||+|..++..+..+=..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999987765433445544
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.73 E-value=0.14 Score=52.91 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
...|.|.|+.|.||||+|+.++.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34789999999999999999998764
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.72 E-value=0.14 Score=54.60 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHH
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
....+|+|.|+.|.||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999983
No 405
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.70 E-value=0.11 Score=54.37 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
....+|.|.|++|.||||+|+.+...+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999988754
No 406
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.64 E-value=0.14 Score=52.73 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=22.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.+|+|.|++|.||||+|+.++..+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988764
No 407
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.60 E-value=0.15 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.|+|.|+.|.||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998876
No 408
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.59 E-value=0.14 Score=57.96 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=27.4
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
..++|+|+|.+|+||||+|..++..+..+=..+.++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 457899999999999999999988765442334444
No 409
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.58 E-value=0.13 Score=55.63 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
++|.|+|+.|+||||||+.++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 410
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.51 E-value=0.15 Score=54.68 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
..++++|+|.+|+||||++..++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999988765
No 411
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.49 E-value=0.57 Score=53.35 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=28.6
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
...++.|.|.+|+||||+|..++.....+=..++|++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 3458999999999999999999887655433566664
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.44 E-value=0.12 Score=56.18 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.++|.|+|+.|+||||||..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999987653
No 413
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.44 E-value=0.22 Score=53.86 Aligned_cols=28 Identities=36% Similarity=0.411 Sum_probs=24.2
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
....+|||.|+.|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457999999999999999999987654
No 414
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.41 E-value=0.15 Score=52.26 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=21.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.|+|.|+.|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 415
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.28 E-value=0.12 Score=55.53 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=20.4
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+..+|+|.|..|.||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 416
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.27 E-value=0.23 Score=48.63 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.++++|.|..|+|||||++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999887654
No 417
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.27 E-value=0.14 Score=51.78 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
-.+++|+|+.|.|||||++.+...+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998755
No 418
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.22 E-value=0.17 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 419
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.17 E-value=0.23 Score=50.62 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=23.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcc-cce
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMN-LKG 243 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~ 243 (1000)
.|.+.|.||+||||+|..++..+..+ ++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 47789999999999999888876554 444
No 420
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.16 E-value=0.19 Score=48.41 Aligned_cols=26 Identities=38% Similarity=0.429 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.-.+++|.|+.|.|||||++.++.-+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998865
No 421
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.12 E-value=0.13 Score=52.63 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
..+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 422
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.10 E-value=0.27 Score=52.58 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=27.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
.++|+|.|-||+||||+|..++..+..+=..+..++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367888999999999999999887765433344443
No 423
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.00 E-value=0.26 Score=53.05 Aligned_cols=29 Identities=28% Similarity=0.278 Sum_probs=24.8
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
....+++|+|+.|+||||+++.++..+..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999887654
No 424
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.82 E-value=0.32 Score=64.61 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=53.0
Q ss_pred HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEech---hHhHHhh-h---cc---CCccchhhh
Q 001889 200 ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPML---EKNLKKK-L---AD---NSIWNVDDG 269 (1000)
Q Consensus 200 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~---~~~~~~~-~---~~---~~~~~~~~~ 269 (1000)
+|..+|..+.-...+.|.|+|++|+|||+||.++......+=..+.|++.- ....... . .. ......++.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~ 1493 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 1493 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHH
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHH
Confidence 455555411113467899999999999999999988766554456666522 1111111 1 00 011222344
Q ss_pred HHHHHHHhc-CCCcEEEecCCC
Q 001889 270 INILASRLQ-HKKVLLVIDDVV 290 (1000)
Q Consensus 270 ~~~i~~~L~-~k~~LlVLDdv~ 290 (1000)
...+++..+ .+.-+||+|.+.
T Consensus 1494 l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1494 LEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHHHhcCCCCEEEEcChh
Confidence 444444433 567899999994
No 425
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.76 E-value=0.16 Score=51.93 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999987654
No 426
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.71 E-value=0.18 Score=54.04 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.++|+|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998765
No 427
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.65 E-value=0.27 Score=52.72 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=26.4
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccc-eEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLK-GVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~ 247 (1000)
-.+++|.|.+|+|||||++.++..+...-. .+.|+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 358999999999999999999876654322 34444
No 428
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.63 E-value=0.23 Score=49.16 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=21.8
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHH
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999988764
No 429
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.61 E-value=0.16 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHhh
Q 001889 215 MIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999987653
No 430
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.56 E-value=0.42 Score=54.00 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
....+|.|+|++|.||||+|++++.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 446789999999999999999988654
No 431
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.54 E-value=0.21 Score=51.71 Aligned_cols=48 Identities=27% Similarity=0.289 Sum_probs=30.4
Q ss_pred HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHH-hhcccceEEEEe
Q 001889 200 ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDT-ISMNLKGVVFLP 248 (1000)
Q Consensus 200 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~f~~~~~~~ 248 (1000)
.|.++|..+- ..-.++.|.|.+|+||||+|.+++.. ....-..++|+.
T Consensus 18 ~LD~~l~GGl-~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 18 GFDELIEGGF-PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTGGGTTTSE-ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHhhcCCC-CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 3444554221 23458999999999999999887654 333334455553
No 432
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.34 E-value=0.44 Score=56.15 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=53.1
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhh--ccCCccchhhhHHHHHHHhc------CCCcEEE
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKL--ADNSIWNVDDGINILASRLQ------HKKVLLV 285 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~L~------~k~~LlV 285 (1000)
+++.|.|.+|.||||++..+...+...-..+....-......... ..................+. .+--+||
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 588899999999999999998876554444444432111111100 00000000000000000000 1234899
Q ss_pred ecCCCC--HHHHHHHhcCcCCCCCCceEEEEeCCcc
Q 001889 286 IDDVVD--IKQLEYLAGKREWFGSGSKIIITSRDEH 319 (1000)
Q Consensus 286 LDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 319 (1000)
+|.+.. ...+..+.... ..+.++|+.--..+
T Consensus 285 IDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCCCHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 999854 45566776554 36677777654433
No 433
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.31 E-value=0.83 Score=45.37 Aligned_cols=104 Identities=17% Similarity=0.150 Sum_probs=54.3
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcc-cceEEEEechhHhHHh-hhc-cCCc----cchhhhHHHHHHHhcCCCcEE
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMN-LKGVVFLPMLEKNLKK-KLA-DNSI----WNVDDGINILASRLQHKKVLL 284 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~-~~~-~~~~----~~~~~~~~~i~~~L~~k~~Ll 284 (1000)
..++..++|..|.||||.+..++++...+ ....++-......... ... .... ...... ..+.+.+.++--+|
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~-~~i~~~~~~~~dvV 85 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS-REILKYFEEDTEVI 85 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSS-THHHHHCCTTCSEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCH-HHHHHHHhccCCEE
Confidence 34789999999999999998888876544 3333332222111111 100 0000 001111 13344444433489
Q ss_pred EecCCCC--HHHHHHHhcCcCCCCCCceEEEEeCCcc
Q 001889 285 VIDDVVD--IKQLEYLAGKREWFGSGSKIIITSRDEH 319 (1000)
Q Consensus 285 VLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 319 (1000)
++|.+.- .++++.+....+ .|..||+|.++.+
T Consensus 86 iIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 86 AIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDMD 119 (191)
T ss_dssp EECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred EEECCCCCCHHHHHHHHHHHh---CCCEEEEEecccc
Confidence 9998733 344554433222 3678999988653
No 434
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.26 E-value=0.32 Score=52.15 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=27.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
..++++|+|.+|+||||++..++..+...-..+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457899999999999999999988765443333343
No 435
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.17 E-value=0.13 Score=52.88 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=16.3
Q ss_pred cEEEEEEecCCCChhHHHHHHH-HHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVY-DTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~-~~~ 237 (1000)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999988 654
No 436
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.13 E-value=0.13 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.8
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
++++|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999876654
No 437
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.00 E-value=0.25 Score=52.83 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
..++|.|.|+.|+||||||..++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999998774
No 438
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=88.98 E-value=1.8 Score=45.90 Aligned_cols=53 Identities=6% Similarity=0.075 Sum_probs=32.0
Q ss_pred CCC--CchHHHHHHHhhcceeeeecccccccchhhHHHHHHHHHhhhcCCCCcEEEEEEeecC
Q 001889 53 RGD--SISPRLLKAIEDSRVSIIVFSQNYASSTWCLDELVKIVQCKNKNDHRQMVFPIFYDVE 113 (1000)
Q Consensus 53 ~g~--~~~~~l~~ai~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~~~vipif~~v~ 113 (1000)
||. .....+.+.++++++.|.|+.-.-..+..+ .++.+.+ + +..++-|+-++|
T Consensus 7 PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l-----~--~kp~ilVlNK~D 61 (282)
T 1puj_A 7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL-----K--NKPRIMLLNKAD 61 (282)
T ss_dssp --CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC-----S--SSCEEEEEECGG
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH-----C--CCCEEEEEECcc
Confidence 554 244678889999999999988665555544 2344443 1 334555655665
No 439
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.85 E-value=0.52 Score=54.05 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=26.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHhhcccc-eEEEEe
Q 001889 215 MIGICGMGGLGKTTLARVVYDTISMNLK-GVVFLP 248 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~ 248 (1000)
.+.|.|.+|.||||++..+...+...-. .+..+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 8899999999999999999887655433 344443
No 440
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.82 E-value=1.3 Score=58.18 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=57.9
Q ss_pred HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEech---hHhHHhh----hcc---CCccchhh
Q 001889 199 KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPML---EKNLKKK----LAD---NSIWNVDD 268 (1000)
Q Consensus 199 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~---~~~~~~~----~~~---~~~~~~~~ 268 (1000)
..|...|..+.=..-++|-|+|+.|.||||||..+....+.+=..++|++.- ....... ..+ ......++
T Consensus 1417 ~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~ 1496 (1706)
T 3cmw_A 1417 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1496 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHH
T ss_pred HHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHH
Confidence 3456666543224568999999999999999999988777777778888632 2222221 111 11222344
Q ss_pred hHHHHHHHhc-CCCcEEEecCCC
Q 001889 269 GINILASRLQ-HKKVLLVIDDVV 290 (1000)
Q Consensus 269 ~~~~i~~~L~-~k~~LlVLDdv~ 290 (1000)
....+...++ +..-++|+|-|.
T Consensus 1497 ~l~~~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1497 ALEICDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCST
T ss_pred HHHHHHHHHHcCCCCEEEEccHH
Confidence 5555555554 456688999884
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.73 E-value=0.37 Score=51.19 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
-.+++|+|.+|+||||||..++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999887554
No 442
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=88.65 E-value=0.46 Score=54.00 Aligned_cols=35 Identities=31% Similarity=0.341 Sum_probs=27.3
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhc-ccceEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISM-NLKGVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~ 247 (1000)
-..++|.|.+|+|||+|+..+.+.+.. +-+.++|.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 456899999999999999999987644 33455555
No 443
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.65 E-value=0.23 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
.+|.|.|++|.||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 444
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.63 E-value=0.33 Score=53.45 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.8
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
..-.++.|+|+.|+|||||++.++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445799999999999999999998765
No 445
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=88.58 E-value=0.63 Score=52.64 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=26.9
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcc-cceEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMN-LKGVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 247 (1000)
-+.++|.|.+|+|||+|+..+.+.+... -+.++|.
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~ 188 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence 4579999999999999999999876433 2444554
No 446
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.56 E-value=0.22 Score=50.48 Aligned_cols=23 Identities=30% Similarity=0.173 Sum_probs=20.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999988754
No 447
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.53 E-value=0.25 Score=51.02 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
....+|+|.|+.|.||||+++.+...+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998765
No 448
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.51 E-value=0.31 Score=50.19 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
...+|+|.|+.|+||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999988765
No 449
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.36 E-value=0.38 Score=54.88 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=25.3
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
....+++|+|..|+|||||++.++..+...
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 346799999999999999999998876543
No 450
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.35 E-value=0.22 Score=49.53 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
-+.|.|.|+.|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999998754
No 451
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=88.30 E-value=1.6 Score=49.05 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q 001889 215 MIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
+++|+|..|.|||||.++++-
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998854
No 452
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.26 E-value=0.37 Score=48.26 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=26.7
Q ss_pred EEEEEE-ecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 214 RMIGIC-GMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 214 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
++|+|+ +-||+||||+|..++..+..+=..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 578887 68999999999999887766444455554
No 453
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.26 E-value=0.71 Score=42.69 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=30.4
Q ss_pred EEEeeCCCCCc--ccCccccCcCCcceeecccccccCCCcc-ccCCCCCcEEEccCCC
Q 001889 585 TLCLSGCSELE--NVPENMEKIESLEELDISGTAIRQPPSS-IFLMKNLKELSFRGCK 639 (1000)
Q Consensus 585 ~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~c~ 639 (1000)
.++.++ ..++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455554 3444 5664432 3577777777777777543 4456666666666654
No 454
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.19 E-value=0.29 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
...|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998764
No 455
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.18 E-value=0.24 Score=51.41 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHH
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
.. .+++|+|+.|.|||||.+.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 34 69999999999999999998754
No 456
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=88.17 E-value=0.22 Score=50.76 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=18.4
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q 001889 215 MIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
-|.|+|.+|+|||+|+..+.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 377999999999999998765
No 457
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.12 E-value=0.28 Score=48.71 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
No 458
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.11 E-value=0.32 Score=50.92 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=28.3
Q ss_pred HHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHH
Q 001889 199 KELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 199 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
.-+..++.... +....+.++|++|.|||.+|.++++.
T Consensus 91 ~~l~~~l~~~~-~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKF-GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCS-TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44667776532 33456999999999999999999985
No 459
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.07 E-value=0.75 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCChhHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
-.+++|+|+.|.|||||++.+..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999998875
No 460
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.01 E-value=0.3 Score=54.28 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.6
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTIS 238 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~ 238 (1000)
++|+|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998764
No 461
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=87.96 E-value=0.61 Score=55.18 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.1
Q ss_pred cEEEEEEecCCCChhHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
-.+++|+|+.|.|||||++.+..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 35899999999999999997764
No 462
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.84 E-value=0.23 Score=50.88 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=24.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
.+++|+|+.|.|||||.+.++.-+. ...+.+++
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~i~~ 63 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA-PTEGKVFL 63 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEE
Confidence 4899999999999999998875332 23344444
No 463
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.84 E-value=0.43 Score=55.52 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=26.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLK 242 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 242 (1000)
...+|.++|++|.||||+|++++..+...|-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~ 64 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGV 64 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 4568999999999999999999988765553
No 464
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.78 E-value=0.32 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.3
Q ss_pred EEEEEEecCCCChhHHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
+.|+|+|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988763
No 465
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.77 E-value=0.28 Score=54.41 Aligned_cols=26 Identities=31% Similarity=0.204 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
..++++|+|+.|.|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44689999999999999999999754
No 466
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.76 E-value=1.5 Score=58.50 Aligned_cols=37 Identities=30% Similarity=0.295 Sum_probs=30.3
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
..+.+.|+|.+|.||||||.++...-..+=..+.|+.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit 1116 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1116 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4568999999999999999999887665556667775
No 467
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.75 E-value=0.32 Score=48.88 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.+|+|.|+.|.||||+|+.++.++.-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 48999999999999999999998753
No 468
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=87.62 E-value=0.58 Score=50.87 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=26.1
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
.+++...|.||+||||+|..++..+...=..+..+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv 48 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVI 48 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEE
Confidence 46777789999999999999988766543334444
No 469
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.57 E-value=0.5 Score=47.61 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=26.3
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceE
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGV 244 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 244 (1000)
+.|+|-|.-|+||||+++.+++.+...++.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 5789999999999999999999887655543
No 470
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.52 E-value=0.99 Score=50.77 Aligned_cols=85 Identities=12% Similarity=0.109 Sum_probs=50.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHhhhccCCc-cch-hhhHHHHHHHhcCCCcEEEecCC
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKKKLADNSI-WNV-DDGINILASRLQHKKVLLVIDDV 289 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~L~~k~~LlVLDdv 289 (1000)
.-.+++|+|+.|.||||+.+.+...+...-..+.+...--+........... ... ......++..|+..+-++++..+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 3458999999999999999999987654422334443211100000000000 001 12345677788888888899998
Q ss_pred CCHHHHH
Q 001889 290 VDIKQLE 296 (1000)
Q Consensus 290 ~~~~~l~ 296 (1000)
.+.....
T Consensus 246 Rd~et~~ 252 (418)
T 1p9r_A 246 RDLETAQ 252 (418)
T ss_dssp CSHHHHH
T ss_pred CCHHHHH
Confidence 8865543
No 471
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.48 E-value=0.57 Score=48.35 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=27.6
Q ss_pred CcEEEEEEe-cCCCChhHHHHHHHHHhhcc-cceEEEEe
Q 001889 212 DVRMIGICG-MGGLGKTTLARVVYDTISMN-LKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 248 (1000)
..++|+|+| -||+||||+|..++..+... =..++.++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 457888874 68999999999999887765 33444444
No 472
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.45 E-value=0.24 Score=51.16 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=24.6
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
-.+++|+|+.|.|||||.+.+..-+. ...+.+++
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~I~~ 64 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYI 64 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEE
Confidence 35899999999999999998875322 23444444
No 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.41 E-value=0.97 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
-.+++|+|+.|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998764
No 474
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.35 E-value=0.48 Score=52.66 Aligned_cols=49 Identities=18% Similarity=0.542 Sum_probs=34.0
Q ss_pred ccccchhHHHHHHHHcC-C----CeEEecCCCCCCCCCchHHHHHHHhhcceeeeecccccccc
Q 001889 24 DTRKSFTSHLYAALNGK-G----IYVFKDDKELERGDSISPRLLKAIEDSRVSIIVFSQNYASS 82 (1000)
Q Consensus 24 D~~~~~~~~l~~~L~~~-g----~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s 82 (1000)
|+...+++.|...|.++ + +.+|-|. +.+.+.+++-++=|++++++|...
T Consensus 28 d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~----------e~~~~~~~~~~~dilli~e~~~~~ 81 (373)
T 3fkq_A 28 DKDKEYLDRLTGVFNTKYADKLEVYSFTDE----------KNAIESVKEYRIDVLIAEEDFNID 81 (373)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTEEEEEESCH----------HHHHHHHHHHTCSEEEEETTCCCC
T ss_pred eCCHHHHHHHHHHHhhccCCceEEEEECCH----------HHHHHHHhcCCCCEEEEcchhhhh
Confidence 44448899999988654 2 2334433 466677788788899999998653
No 475
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.14 E-value=0.34 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEEEecCCCChhHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 476
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.06 E-value=0.51 Score=54.42 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=24.4
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhcc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISMN 240 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 240 (1000)
...++|+|+|.+|+||||++..++..+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 356799999999999999999998776654
No 477
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.05 E-value=0.56 Score=51.43 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
.+..+|+|+|.+|+|||||+..+...+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999876543
No 478
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.00 E-value=0.31 Score=48.66 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998864
No 479
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=86.94 E-value=0.39 Score=55.42 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=24.7
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhc
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISM 239 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 239 (1000)
...+|.+.|+.|.||||+|++++.++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998764
No 480
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.92 E-value=0.27 Score=50.87 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHH
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
-.+++|+|+.|.|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998764
No 481
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.84 E-value=0.53 Score=51.15 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=26.9
Q ss_pred HhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 200 ELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 200 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.|..+|..+- ..-.++.|+|.+|+||||||..++...
T Consensus 86 ~LD~~l~GGl-~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGL-ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSE-ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444553221 345789999999999999999988653
No 482
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=86.83 E-value=0.39 Score=49.73 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=25.6
Q ss_pred EEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 216 IGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 216 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
|+|.|-||+||||+|..++..+...=..++.++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999988766544455554
No 483
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.81 E-value=0.32 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEEEEEecCCCChhHHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
.+++|+|+.|.|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998863
No 484
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.78 E-value=0.47 Score=53.14 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=32.1
Q ss_pred HHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHHHhhc------ccceEEEEe
Q 001889 198 LKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYDTISM------NLKGVVFLP 248 (1000)
Q Consensus 198 l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 248 (1000)
+..|..+|..+- ..-.++.|+|.+|+|||||+..++-.... .-..++|+.
T Consensus 164 ~~~LD~lLgGGI-~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 164 SKNLDTLLGGGV-ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp CHHHHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred ChhHHHHhcCCc-CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 345555564222 33458999999999999999977643221 223466665
No 485
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.67 E-value=0.28 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEEEecCCCChhHHHHHHHH
Q 001889 214 RMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
.+++|+|+.|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999998875
No 486
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.62 E-value=0.31 Score=50.86 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=26.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
.+++|+|+.|.|||||.+.++.-+... +.+++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~ 59 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFA 59 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEEC
Confidence 489999999999999999988655444 655553
No 487
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.59 E-value=0.37 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHHHHHHH
Q 001889 215 MIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998763
No 488
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.51 E-value=0.68 Score=51.17 Aligned_cols=84 Identities=17% Similarity=0.263 Sum_probs=48.2
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEEechhHhHHh-h-------h-ccCCc--cchhhhHHHHHHHhcCCCc
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLPMLEKNLKK-K-------L-ADNSI--WNVDDGINILASRLQHKKV 282 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~-~-------~-~~~~~--~~~~~~~~~i~~~L~~k~~ 282 (1000)
.+++|+|+.|.|||||++.+...+.. -.+.+.+....+.... . . .+... .........++..+...+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC
Confidence 47999999999999999999875433 3455555543221110 0 0 00000 0111233556666666666
Q ss_pred EEEecCCCCHHHHHHH
Q 001889 283 LLVIDDVVDIKQLEYL 298 (1000)
Q Consensus 283 LlVLDdv~~~~~l~~l 298 (1000)
.+++|.+...+.++.+
T Consensus 255 ~~l~~e~r~~~~~~~l 270 (361)
T 2gza_A 255 RILLAELRGGEAYDFI 270 (361)
T ss_dssp EEEESCCCSTHHHHHH
T ss_pred EEEEcCchHHHHHHHH
Confidence 7888888776655544
No 489
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.50 E-value=0.29 Score=51.49 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=25.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
-.+++|+|+.|.|||||.+.++.-+. ...+.+++
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~ 65 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIV 65 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEE
Confidence 35899999999999999998875332 23444444
No 490
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.50 E-value=0.57 Score=51.40 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=28.6
Q ss_pred CCcEEEEEEecCCCChhHHHHHHHHHhh--cccceEEEEe
Q 001889 211 DDVRMIGICGMGGLGKTTLARVVYDTIS--MNLKGVVFLP 248 (1000)
Q Consensus 211 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~ 248 (1000)
...+++.+.|.||+||||+|..++..+. ..=..+..++
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4467899999999999999999988776 4433444443
No 491
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.49 E-value=0.34 Score=51.13 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=25.4
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhh-cccceEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTIS-MNLKGVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~ 247 (1000)
-.+++|+|+.|.|||||++.++.-.. ....+.+++
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~ 81 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 81 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence 34899999999999999999886421 223455554
No 492
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.42 E-value=0.3 Score=50.66 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=24.6
Q ss_pred EEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
.+++|+|+.|.|||||.+.++.-+. ...+.+++
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~ 65 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIF 65 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEE
Confidence 4899999999999999998875332 23444544
No 493
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.41 E-value=0.29 Score=51.56 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=25.0
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
-.+++|+|+.|.|||||++.++.-+. ...+.+++
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~ 70 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS-PSHGECHL 70 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC-CSSCEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEE
Confidence 35899999999999999998875332 22444444
No 494
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=86.37 E-value=0.62 Score=50.78 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=28.6
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHhhcccceEEEEe
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFLP 248 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 248 (1000)
..+++.+.|-||+||||+|..++..+...=..+..++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578888999999999999999987766544455544
No 495
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.34 E-value=0.32 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.4
Q ss_pred EEEEEEecCCCChhHHHHHHHHHh
Q 001889 214 RMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 214 ~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.+|+|.|+.|.||||+|+.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999998765
No 496
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=86.29 E-value=0.44 Score=47.77 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=20.0
Q ss_pred cchhhHHHhhcccCCCCCCCcEEEEEEecCCCChhHHHHHHHH
Q 001889 193 GIDSRLKELRSLIDGGPNDDVRMIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 193 Gr~~~l~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
|++...+.+.++... ...-.|+|+|.+|+|||||...+..
T Consensus 13 ~~~~~~~~m~~~~~~---~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQ---GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --------------------CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcccchhHHHhHhhc---CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 333344444444332 2344678999999999999988875
No 497
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.24 E-value=0.36 Score=51.82 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHh
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDTI 237 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 237 (1000)
.-.+++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34589999999999999999998766
No 498
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.21 E-value=0.32 Score=47.77 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q 001889 215 MIGICGMGGLGKTTLARVVYD 235 (1000)
Q Consensus 215 vv~I~G~gGiGKTtLA~~v~~ 235 (1000)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
No 499
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.18 E-value=0.37 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHH
Q 001889 212 DVRMIGICGMGGLGKTTLARVVYDT 236 (1000)
Q Consensus 212 ~~~vv~I~G~gGiGKTtLA~~v~~~ 236 (1000)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999988753
No 500
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.18 E-value=0.31 Score=51.26 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=24.8
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHhhcccceEEEE
Q 001889 213 VRMIGICGMGGLGKTTLARVVYDTISMNLKGVVFL 247 (1000)
Q Consensus 213 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 247 (1000)
-.+++|+|+.|.|||||++.++.-+. ...+.+++
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~ 83 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED-FDEGEIII 83 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC-CCCcEEEE
Confidence 35899999999999999998875332 22344444
Done!