Query 001890
Match_columns 1000
No_of_seqs 168 out of 225
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:23:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bpt_A Importin beta-1 subunit 97.2 0.12 4E-06 61.9 28.6 312 53-441 434-767 (861)
2 4fdd_A Transportin-1; heat rep 97.2 0.039 1.3E-06 67.1 24.9 402 67-523 356-785 (852)
3 1qgr_A Protein (importin beta 97.2 0.097 3.3E-06 62.8 27.8 366 68-521 364-773 (876)
4 4fdd_A Transportin-1; heat rep 97.1 0.037 1.2E-06 67.4 23.6 260 93-440 234-515 (852)
5 1u6g_C TIP120 protein, CAND1; 97.1 0.038 1.3E-06 70.0 24.4 114 93-217 153-266 (1230)
6 2bpt_A Importin beta-1 subunit 97.0 0.25 8.7E-06 59.0 29.1 337 93-523 154-530 (861)
7 1u6g_C TIP120 protein, CAND1; 96.8 0.22 7.5E-06 63.1 27.8 117 94-216 454-577 (1230)
8 1b3u_A Protein (protein phosph 96.8 0.029 9.8E-07 63.8 17.9 308 112-521 278-586 (588)
9 1qgr_A Protein (importin beta 96.6 0.41 1.4E-05 57.3 26.5 356 95-520 471-869 (876)
10 1b3u_A Protein (protein phosph 96.1 0.1 3.5E-06 59.3 17.1 325 93-521 106-430 (588)
11 2qk2_A LP04448P; mini spindles 96.0 0.41 1.4E-05 49.1 19.3 178 177-441 29-209 (242)
12 2vgl_B AP-2 complex subunit be 95.8 1.2 4.1E-05 52.3 24.3 306 96-520 221-530 (591)
13 1ibr_B P95, importin beta-1 su 95.0 0.78 2.7E-05 50.3 18.4 115 93-216 149-269 (462)
14 2jdq_A Importin alpha-1 subuni 94.3 1.5 5.1E-05 48.0 18.3 313 115-523 64-391 (450)
15 2qk1_A Protein STU2; STU2P, XM 93.5 2 6.9E-05 45.1 16.7 139 282-442 78-225 (249)
16 2vgl_A Adaptor protein complex 93.2 3.5 0.00012 49.1 20.0 196 286-523 387-590 (621)
17 2qk2_A LP04448P; mini spindles 92.7 0.17 5.9E-06 52.0 6.9 130 69-216 14-143 (242)
18 2jdq_A Importin alpha-1 subuni 92.5 2 6.8E-05 47.0 15.6 314 114-521 106-442 (450)
19 1wa5_B Importin alpha subunit; 92.4 3.3 0.00011 47.2 17.8 334 93-523 106-458 (530)
20 1w63_A Adapter-related protein 92.3 9 0.00031 45.3 21.9 199 281-522 366-577 (618)
21 4b8j_A Importin subunit alpha- 92.0 5.3 0.00018 45.3 18.8 310 122-523 81-401 (528)
22 4b8j_A Importin subunit alpha- 91.8 2.9 0.0001 47.5 16.3 333 94-523 94-444 (528)
23 1wa5_B Importin alpha subunit; 89.0 6.6 0.00023 44.7 16.1 305 122-523 94-413 (530)
24 1wa5_C Importin alpha RE-expor 87.4 47 0.0016 41.1 23.4 83 133-216 263-348 (960)
25 3tpo_A Importin subunit alpha- 86.3 27 0.00094 40.0 19.2 95 93-192 95-191 (529)
26 2qk1_A Protein STU2; STU2P, XM 81.8 6.8 0.00023 41.0 10.6 113 394-523 59-176 (249)
27 1ibr_B P95, importin beta-1 su 79.8 72 0.0025 34.5 28.8 313 128-523 102-438 (462)
28 1w63_A Adapter-related protein 79.3 1.1E+02 0.0036 36.1 21.1 292 56-456 257-556 (618)
29 1jdh_A Beta-catenin; beta-cate 78.5 41 0.0014 37.5 16.3 72 114-191 100-171 (529)
30 2z6h_A Catenin beta-1, beta-ca 78.4 65 0.0022 37.7 18.7 317 112-523 11-337 (644)
31 3ul1_B Importin subunit alpha- 76.8 49 0.0017 37.8 16.6 94 93-192 76-172 (510)
32 4ffb_C Protein STU2; tubulin f 75.6 28 0.00095 36.4 13.1 137 280-441 68-216 (278)
33 2z6h_A Catenin beta-1, beta-ca 74.3 1.1E+02 0.0039 35.6 19.3 73 115-193 56-128 (644)
34 4hxt_A De novo protein OR329; 74.3 26 0.0009 34.6 12.0 214 280-523 17-242 (252)
35 4db8_A Armadillo-repeat protei 74.2 32 0.0011 34.4 12.6 211 279-520 26-249 (252)
36 2x19_B Importin-13; nuclear tr 73.6 1.6E+02 0.0054 36.0 20.9 134 54-195 513-652 (963)
37 4hxt_A De novo protein OR329; 72.5 36 0.0012 33.6 12.4 151 347-522 45-199 (252)
38 2z6g_A B-catenin; FULL-length, 71.4 70 0.0024 38.8 16.9 73 115-193 192-264 (780)
39 1jdh_A Beta-catenin; beta-cate 71.1 1.3E+02 0.0044 33.4 17.9 73 115-193 59-131 (529)
40 3tpo_A Importin subunit alpha- 70.2 1.5E+02 0.0053 33.7 19.9 61 127-192 87-149 (529)
41 3ul1_B Importin subunit alpha- 69.9 1.5E+02 0.0053 33.6 18.6 309 117-522 60-387 (510)
42 2z6g_A B-catenin; FULL-length, 65.9 2.4E+02 0.0081 34.2 21.2 74 113-191 148-221 (780)
43 4db8_A Armadillo-repeat protei 65.6 17 0.00059 36.4 8.5 72 114-192 53-125 (252)
44 2x1g_F Cadmus; transport prote 64.2 1.6E+02 0.0053 36.2 18.1 77 342-440 542-618 (971)
45 2x1g_F Cadmus; transport prote 58.0 31 0.0011 42.4 10.4 109 53-169 529-643 (971)
46 2iw3_A Elongation factor 3A; a 49.2 72 0.0025 40.4 11.6 57 277-335 107-163 (986)
47 2x19_B Importin-13; nuclear tr 45.7 4.9E+02 0.017 31.6 18.6 108 93-215 468-577 (963)
48 4db6_A Armadillo repeat protei 33.8 2.3E+02 0.0078 27.2 10.4 160 340-523 6-168 (210)
49 3tjz_B Coatomer subunit gamma; 26.7 2E+02 0.0069 32.0 9.4 128 363-523 189-317 (355)
50 1kdx_A CBP; complex (transcrip 22.6 29 0.00099 31.2 1.3 29 34-62 20-48 (81)
51 1sz9_A PCF11 protein; RNA poly 21.9 55 0.0019 31.9 3.3 86 30-125 9-95 (144)
52 1oyz_A Hypothetical protein YI 21.6 6.3E+02 0.021 25.4 12.4 135 347-523 24-158 (280)
53 4flb_A Regulation of nuclear P 20.8 1.4E+02 0.0047 28.1 5.8 72 50-125 20-92 (132)
54 3tjz_B Coatomer subunit gamma; 20.6 2.5E+02 0.0087 31.2 8.7 14 178-191 119-132 (355)
No 1
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.18 E-value=0.12 Score=61.94 Aligned_cols=312 Identities=10% Similarity=0.067 Sum_probs=180.0
Q ss_pred hhhHHHHHHhh---CCCChhhhHHHHHHHHHHHHhhhcCCcee-eHHHHHHHHHHhcc----cccCcchhhHHHHHHHHH
Q 001890 53 KIGKLCEYASK---NPLRIPKITTLLEQRCYKDLRNENFGSVK-VVVCIYKKFLSSCK----EQMPLFASSLLGIIRTLL 124 (1000)
Q Consensus 53 ~lsKL~~Ya~s---~P~KL~KIg~yLekR~~kDl~r~r~G~V~-V~l~i~~~Ll~~C~----~~l~LFa~s~L~Ii~~LL 124 (1000)
-+|.++.+... .+.-++.|-..|-+.+..+ ..|+ -+..++..++..|. ..+.-|.+.++..+-.+|
T Consensus 434 ~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~------~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l 507 (861)
T 2bpt_A 434 CIGRIADSVAESIDPQQHLPGVVQACLIGLQDH------PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA 507 (861)
T ss_dssp HHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC------HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 34555555443 2344666666666554221 1222 24456777888875 446566677777777777
Q ss_pred hcc-CCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhc--------C--chHHHHHHHHHHHHHHHHhHhh
Q 001890 125 EQT-RQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEM--------G--NDERALRLRSAGLQVLAYMVKF 193 (1000)
Q Consensus 125 ~qs-~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~--------~--~de~~~rlR~AGLqAL~~vV~~ 193 (1000)
+.. .+++++..++.++..++....+. ....+..+++.+.+.-... . +++....+|...+++|..++..
T Consensus 508 ~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~ 586 (861)
T 2bpt_A 508 NRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK 586 (861)
T ss_dssp TCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 621 23567777888887777654432 2222344555554443221 1 1134566889999999999998
Q ss_pred hccccccccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCCCCC
Q 001890 194 MGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGPDP 273 (1000)
Q Consensus 194 ~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~~~ 273 (1000)
.+. ++...++.++|.++..+.... +
T Consensus 587 ~~~--~~~~~~~~l~~~l~~~l~~~~---------------------------------~-------------------- 611 (861)
T 2bpt_A 587 SPS--SVEPVADMLMGLFFRLLEKKD---------------------------------S-------------------- 611 (861)
T ss_dssp CGG--GTGGGHHHHHHHHHHHHHSTT---------------------------------G--------------------
T ss_pred hhh--hhHHHHHHHHHHHHHHHccCC---------------------------------C--------------------
Confidence 875 445567788888877765320 0
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhhh-cc-hHHHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhc-CCCcchHHHH
Q 001890 274 TMDTSKSPSYWSRVCLDNMARLAKE-TT-TVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEES-GENSHLLLCN 350 (1000)
Q Consensus 274 ~~e~~e~p~vlA~~CLr~l~~~A~e-~t-tvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~-~Q~~~lvLs~ 350 (1000)
.....-+..|+..++....+ .. .+..++..++..+. +..|.- ...|+.++..+...+... ..+-.-++..
T Consensus 612 -----~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-~~~~~v-r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ 684 (861)
T 2bpt_A 612 -----AFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN-QVDSPV-SITAVGFIADISNSLEEDFRRYSDAMMNV 684 (861)
T ss_dssp -----GGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH-CTTSHH-HHHHHHHHHHHHHHTGGGGHHHHHHHHHH
T ss_pred -----CcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccHHH-HHHHHHHHHHHHHHhchhccchHHHHHHH
Confidence 01122344566666543322 21 25567777777774 333333 345666666665543211 0122356667
Q ss_pred HHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHH
Q 001890 351 LVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLEN 430 (1000)
Q Consensus 351 Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~ 430 (1000)
+++.|.+.+ .++.+|..++.++..++.... -.....+..++..|.+.++...+. ++ .+..+....++.+..+
T Consensus 685 l~~~l~~~~--~~~~vr~~~~~~l~~l~~~~~----~~~~~~l~~~l~~l~~~~~~~~~~-~d-~d~~~~~~~vr~~~l~ 756 (861)
T 2bpt_A 685 LAQMISNPN--ARRELKPAVLSVFGDIASNIG----ADFIPYLNDIMALCVAAQNTKPEN-GT-LEALDYQIKVLEAVLD 756 (861)
T ss_dssp HHHHHHCTT--CCTTHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHHHHHTCCCSS-SS-HHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcc--ccHhhhHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhcCCCC-CC-hHHHHHHHHHHHHHHH
Confidence 777776633 247788888888888876432 234677788888888887654321 11 0111122467788888
Q ss_pred HHHHhhcccCC
Q 001890 431 CISWLSKKVGD 441 (1000)
Q Consensus 431 CIg~LA~hV~d 441 (1000)
+++.++..++.
T Consensus 757 ~~~~i~~~l~~ 767 (861)
T 2bpt_A 757 AYVGIVAGLHD 767 (861)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHcc
Confidence 99999888874
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.18 E-value=0.039 Score=67.08 Aligned_cols=402 Identities=13% Similarity=0.128 Sum_probs=208.3
Q ss_pred ChhhhHHHHHHHHHHHHhhhcCCceeeHHHHHHHHHHhcccccCcchhhHHHHHHHHHhccCCcceeehhHhHHHHHHhc
Q 001890 67 RIPKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDS 146 (1000)
Q Consensus 67 KL~KIg~yLekR~~kDl~r~r~G~V~V~l~i~~~Ll~~C~~~l~LFa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~ 146 (1000)
=++.+-.+|.+.+..+-|+.|.+ ++.++..+...|.+.+.-+...++..+-.+|. ..++.+|..++.++..|+..
T Consensus 356 ~~~~l~~~l~~~l~~~~~~~R~a----a~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 356 LLPHILPLLKELLFHHEWVVKES----GILVLGAIAEGCMQGMIPYLPELIPHLIQCLS-DKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHH----HHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHH----HHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence 35778888888776665666654 66788888888987776788888888888888 67888888899999888764
Q ss_pred CCchhhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHhhhccccccccccchHHHHHHhhhccccCCCCCCc
Q 001890 147 QTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGK 226 (1000)
Q Consensus 147 q~D~~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~~~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~ 226 (1000)
-........+..+++.+.+.-... + .+.|.++..||..++...+. .+...++.|++.++.-+...+. ..
T Consensus 431 ~~~~~~~~~~~~ll~~L~~~L~d~--~---~~vr~~a~~aL~~l~~~~~~--~l~~~l~~ll~~L~~~l~~~~~---~~- 499 (852)
T 4fdd_A 431 VVSQPPDTYLKPLMTELLKRILDS--N---KRVQEAACSAFATLEEEACT--ELVPYLAYILDTLVFAFSKYQH---KN- 499 (852)
T ss_dssp HHHSCTTTTHHHHHHHHHHHHTCS--S---HHHHHHHHHHHHHHHHHHGG--GGGGGHHHHHHHHHHHHHHCCH---HH-
T ss_pred hccchHHHHHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHHHHHHhhH--hhHhHHHHHHHHHHHHHHHhCh---HH-
Confidence 221122333567777777665422 1 47888999999999876653 2445577777777666653210 00
Q ss_pred cCccCCcchhhhhhhhcccccCCCCCCccccc-ccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhh-cch-HH
Q 001890 227 EGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKK-VSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKE-TTT-VR 303 (1000)
Q Consensus 227 ~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r-~ps~~~~~~~~~~~~~~e~~e~p~vlA~~CLr~l~~~A~e-~tt-vr 303 (1000)
......-+..+...-+.....+..... .|..-.. ...-.+.+.+. .-+..|+..++..... ... +.
T Consensus 500 -----~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~-----~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~ 568 (852)
T 4fdd_A 500 -----LLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK-----WNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCE 568 (852)
T ss_dssp -----HHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHH-----HHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHH
T ss_pred -----HHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHH-----HHhcccccHHH-HHHHHHHHHHHHHHhHhHHHHHH
Confidence 000000011110000000000000000 0000000 00000111222 2356888888754331 110 22
Q ss_pred HHhhhhhhhcc-----------CC-CCCCCCcchHHHHHHHHHHHHhhcCCC--cc----hHHHHHHHhhhccCCCCCch
Q 001890 304 RVLEPLFQIFD-----------AE-NHWSTETGVACSVLLYLQSLLEESGEN--SH----LLLCNLVKHLDHKSVAKQPL 365 (1000)
Q Consensus 304 ~VLepvf~~lD-----------~~-~~Wsp~~gfAi~vf~~iq~l~e~~~Q~--~~----lvLs~Lv~HLd~k~v~~~p~ 365 (1000)
.++..++.-+. +. ..=.++..+-..++..+-.++..-|++ .| -++..+++.|.++ .+.
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~----~~~ 644 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK----MPE 644 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS----SHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCC----Chh
Confidence 22222111110 00 000123445544455544443332333 22 2455666666553 478
Q ss_pred hhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHHHHhhcccC-----
Q 001890 366 AQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVG----- 440 (1000)
Q Consensus 366 ~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA~hV~----- 440 (1000)
+|...+.++..+++......... +..++..|.+.+... +...+.....+||+++.+++
T Consensus 645 vr~~a~~~l~~l~~~~~~~~~~~----l~~~lp~l~~~l~~~-------------~~~v~~~a~~alg~i~~~~~~~~~p 707 (852)
T 4fdd_A 645 VRQSSFALLGDLTKACFQHVKPC----IADFMPILGTNLNPE-------------FISVCNNATWAIGEISIQMGIEMQP 707 (852)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGG----HHHHHHHHHHTCCTT-------------SHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHcCcc-------------chHHHHHHHHHHHHHHHHhhHhHHH
Confidence 88888888888876544333332 333444444444210 24455667778999988874
Q ss_pred CCchHHHHHHHHHhhcCCCccchh-hhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhc-CCCchhhHHHHHHHH
Q 001890 441 DVGPILDVMAGVLENMSNNTVVAR-TTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMA-HPDHETRVGAHTVLS 518 (1000)
Q Consensus 441 da~qI~DMmavmLenis~~~~~ar-~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am~-~pD~e~Rl~a~~If~ 518 (1000)
|.+.+.. .++..+.. |...+ .+-.+.-..+++....|+. -+.+-+.|+++++.++- ..|.+.|-.|.+=|-
T Consensus 708 ~~~~il~---~L~~~l~~-~~~~~~~~~~a~~~igrl~~~~~~~---~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~ 780 (852)
T 4fdd_A 708 YIPMVLH---QLVEIINR-PNTPKTLLENTAITIGRLGYVCPQE---VAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGIC 780 (852)
T ss_dssp GTHHHHH---HHHHHHTC-SSCCHHHHHHHHHHHHHHHHHCHHH---HGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHhCC-CCCCchHHHHHHHHHHHHHHhCHHH---hCccHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444444 43444443 22222 1222222223444222221 02233678888888884 588888999988888
Q ss_pred HhhcC
Q 001890 519 VVLMP 523 (1000)
Q Consensus 519 ~lL~p 523 (1000)
.++-.
T Consensus 781 ~li~~ 785 (852)
T 4fdd_A 781 TMISV 785 (852)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87754
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.17 E-value=0.097 Score=62.76 Aligned_cols=366 Identities=13% Similarity=0.121 Sum_probs=189.3
Q ss_pred hhhhHHHHHHHHHHHHhhhcCCceeeHHHHHHHHHHhcc-cccCcchhhHHHHHHHHHhccCCcceeehhHhHHHHHHhc
Q 001890 68 IPKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCK-EQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDS 146 (1000)
Q Consensus 68 L~KIg~yLekR~~kDl~r~r~G~V~V~l~i~~~Ll~~C~-~~l~LFa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~ 146 (1000)
++.|-.+|.+.+...-|+.|. -++.++..+...|. +.+.-+...++..+-..|. ..++.+|..++.++..|+..
T Consensus 364 ~~~~l~~l~~~l~~~~~~~r~----~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~-d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 364 VPHVLPFIKEHIKNPDWRYRD----AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-DPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHH----HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCChHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHh
Confidence 566666666555433343333 23445555666665 3344456666776666776 56788888999999999875
Q ss_pred CCch-hhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHhhhcc------------ccccccccchHHHHHHh
Q 001890 147 QTDG-TYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGE------------QSHMSMDFDKIISVTLE 213 (1000)
Q Consensus 147 q~D~-~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~~~~e------------~shis~q~D~IVpvILe 213 (1000)
-.+. .....++.+++.+...... + .++|...+.||..++...++ ...+...++.|+|.++.
T Consensus 439 ~~~~~~~~~~l~~~l~~l~~~l~~---~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~ 512 (876)
T 1qgr_A 439 LPEAAINDVYLAPLLQCLIEGLSA---E---PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE 512 (876)
T ss_dssp CGGGTSSTTTHHHHHHHHHHHTTS---C---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHH
T ss_pred CchhcccHHHHHHHHHHHHHHHcC---C---HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHH
Confidence 4321 1123356677777665532 1 45688889999998876541 23455567788888776
Q ss_pred hhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 001890 214 NFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMA 293 (1000)
Q Consensus 214 Nl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~~~~~e~~e~p~vlA~~CLr~l~ 293 (1000)
.+.... . +..+.+.-+..||..|+
T Consensus 513 ~l~~~~---~-----------------------------------------------------~~~~~r~~~~~~l~~l~ 536 (876)
T 1qgr_A 513 TTDRPD---G-----------------------------------------------------HQNNLRSSAYESLMEIV 536 (876)
T ss_dssp HTTSCS---S-----------------------------------------------------CSTTHHHHHHHHHHHHH
T ss_pred HHhCcC---c-----------------------------------------------------chhhHHHHHHHHHHHHH
Confidence 665220 0 01133344556666665
Q ss_pred Hhhhh--cchHHHHhhhhhhhcc-----CCCCCCCCc--------chHHHHHHHHHHHHh-h-cCCCcchHHHHHHHhhh
Q 001890 294 RLAKE--TTTVRRVLEPLFQIFD-----AENHWSTET--------GVACSVLLYLQSLLE-E-SGENSHLLLCNLVKHLD 356 (1000)
Q Consensus 294 ~~A~e--~ttvr~VLepvf~~lD-----~~~~Wsp~~--------gfAi~vf~~iq~l~e-~-~~Q~~~lvLs~Lv~HLd 356 (1000)
..... ...+..++..++..+. ..+.|+.+. +.+..+|..+...+. . -..+---++..+++-|.
T Consensus 537 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~ 616 (876)
T 1qgr_A 537 KNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616 (876)
T ss_dssp HTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-
T ss_pred HHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHH
Confidence 43321 1113344444444332 123343321 233444444432211 0 01122235566666665
Q ss_pred ccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHHHHhh
Q 001890 357 HKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLS 436 (1000)
Q Consensus 357 ~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA 436 (1000)
+.+ ..+.++..++.++..++....... ...+..++..|.+.+.... +..++.+...|++.++
T Consensus 617 ~~~--~~~~v~~~a~~~l~~l~~~~~~~~----~~~~~~~~~~l~~~l~~~~------------~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 617 STA--GSGGVQEDALMAVSTLVEVLGGEF----LKYMEAFKPFLGIGLKNYA------------EYQVCLAAVGLVGDLC 678 (876)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHGGGG----GGGHHHHHHHHHHHHHHCT------------THHHHHHHHHHHHHHH
T ss_pred hcc--CCCCccHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHcCcc------------hHHHHHHHHHHHHHHH
Confidence 532 014677788888888776433222 2233445555555554321 3556777888999998
Q ss_pred cccCC-Cch-HHHHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhcCC----Cc---
Q 001890 437 KKVGD-VGP-ILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHP----DH--- 507 (1000)
Q Consensus 437 ~hV~d-a~q-I~DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am~~p----D~--- 507 (1000)
..++. ..+ +.++|..+++.+............+..-.++++..++.. + ..|-+.++..|+...-.. |+
T Consensus 679 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~-~--~~~l~~~~~~l~~~~~~~~~~~d~~~~ 755 (876)
T 1qgr_A 679 RALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE-F--KKYLEVVLNTLQQASQAQVDKSDYDMV 755 (876)
T ss_dssp HHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG-G--GGGHHHHHHHHHHHHTCCCCTTCHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchh-H--HHHHHHHHHHHHHHHhccCCCCChHHH
Confidence 88763 112 456777777777652111112223333334444333321 1 113344555455544322 12
Q ss_pred ----hhhHHHHHHHHHhh
Q 001890 508 ----ETRVGAHTVLSVVL 521 (1000)
Q Consensus 508 ----e~Rl~a~~If~~lL 521 (1000)
+.|.++.+.|..++
T Consensus 756 ~~~~~~r~~~~~~~~~i~ 773 (876)
T 1qgr_A 756 DYLNELRESCLEAYTGIV 773 (876)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 57777776666554
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.10 E-value=0.037 Score=67.35 Aligned_cols=260 Identities=13% Similarity=0.155 Sum_probs=144.1
Q ss_pred eHHHHHHHHHHhcccccCcchhhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHH-hhhhHHHHHHHHhH---
Q 001890 93 VVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMF-NLEGLIPKLCQLAQ--- 168 (1000)
Q Consensus 93 V~l~i~~~Ll~~C~~~l~LFa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~-~ye~fV~~f~~ma~--- 168 (1000)
-+++++..|...+++.+.-+...++..+-.++. ..+++.+..+++.+..++....-..+.. .+..+++.+.+...
T Consensus 234 ~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e 312 (852)
T 4fdd_A 234 NVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ-DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSD 312 (852)
T ss_dssp HHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 356677777777776655556666766666776 5677788888888888775432223322 23556666665541
Q ss_pred --------hcCchH------HHHHHHHHHHHHHHHhHhhhccccccccccchHHHHHHhhhccccCCCCCCccCccCCcc
Q 001890 169 --------EMGNDE------RALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQS 234 (1000)
Q Consensus 169 --------~~~~de------~~~rlR~AGLqAL~~vV~~~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~ 234 (1000)
+..+|+ ..-+.|.++.++|..++...++. -+..++|.+...+.+.
T Consensus 313 ~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-----~~~~l~~~l~~~l~~~---------------- 371 (852)
T 4fdd_A 313 IDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-----LLPHILPLLKELLFHH---------------- 371 (852)
T ss_dssp HHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-----GHHHHHHHHHHHHTCS----------------
T ss_pred hHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHhcCC----------------
Confidence 111111 12246889999999988766531 1445566665555421
Q ss_pred hhhhhhhhcccccCCCCCCcccccccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhh--cchHHHHhhhhhhh
Q 001890 235 EDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKE--TTTVRRVLEPLFQI 312 (1000)
Q Consensus 235 ~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~~~~~e~~e~p~vlA~~CLr~l~~~A~e--~ttvr~VLepvf~~ 312 (1000)
.| ..+.-|..+|.+|+.-..+ ...+..++..++..
T Consensus 372 --~~-----------------------------------------~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~ 408 (852)
T 4fdd_A 372 --EW-----------------------------------------VVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQC 408 (852)
T ss_dssp --SH-----------------------------------------HHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHH
T ss_pred --CH-----------------------------------------HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 00 1122344555555432221 12356677777777
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHHhhcCC--CcchHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHH
Q 001890 313 FDAENHWSTETGVACSVLLYLQSLLEESGE--NSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAII 390 (1000)
Q Consensus 313 lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q--~~~lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvi 390 (1000)
+.+.+ |.- ..-|..++..+..++....+ +-.-++..+++.|... ++.+|......+..++........
T Consensus 409 l~d~~-~~V-r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~----~~~vr~~a~~aL~~l~~~~~~~l~---- 478 (852)
T 4fdd_A 409 LSDKK-ALV-RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS----NKRVQEAACSAFATLEEEACTELV---- 478 (852)
T ss_dssp TTCSS-HHH-HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS----SHHHHHHHHHHHHHHHHHHGGGGG----
T ss_pred cCCCC-HHH-HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHhhHhhH----
Confidence 75432 222 23344444444444432222 2334667777777542 588899888888888765443322
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHHHHhhcccC
Q 001890 391 GTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVG 440 (1000)
Q Consensus 391 dvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA~hV~ 440 (1000)
..+..++..|.+.++.. +.+-...+.+||+.++.+++
T Consensus 479 ~~l~~ll~~L~~~l~~~-------------~~~~~~~~~~ai~~l~~~~~ 515 (852)
T 4fdd_A 479 PYLAYILDTLVFAFSKY-------------QHKNLLILYDAIGTLADSVG 515 (852)
T ss_dssp GGHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHh-------------ChHHHHHHHHHHHHHHHHhh
Confidence 23455555555555431 12223457788888887766
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.10 E-value=0.038 Score=70.00 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=76.3
Q ss_pred eHHHHHHHHHHhcccccCcchhhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhcCc
Q 001890 93 VVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGN 172 (1000)
Q Consensus 93 V~l~i~~~Ll~~C~~~l~LFa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~~~ 172 (1000)
-++.++.+++..+.+.+.-|...++..+-.+|. ..++..|..++..+..++..-.+.. |+.+++.+.+......+
T Consensus 153 ~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~-~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~ 227 (1230)
T 1u6g_C 153 EALDIMADMLSRQGGLLVNFHPSILTCLLPQLT-SPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDS 227 (1230)
T ss_dssp HHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG-CSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccCCc
Confidence 455666666655566665566777777777777 5677788888888888886544322 55666666665543322
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhccccccccccchHHHHHHhhhcc
Q 001890 173 DERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVD 217 (1000)
Q Consensus 173 de~~~rlR~AGLqAL~~vV~~~~e~shis~q~D~IVpvILeNl~~ 217 (1000)
...|...+++|..++...+. .+...++.++|.++..+.+
T Consensus 228 ----~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d 266 (1230)
T 1u6g_C 228 ----MSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNV 266 (1230)
T ss_dssp ----SCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSS
T ss_pred ----hhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcC
Confidence 23566678898888876653 4556689999999998873
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.00 E-value=0.25 Score=59.01 Aligned_cols=337 Identities=11% Similarity=0.151 Sum_probs=176.5
Q ss_pred eHHHHHHHHHHhcccc---cCcchhhHHHHHHHHHhccC--CcceeehhHhHHHHHHhcCCch-hhHHhhhhHHHHHHHH
Q 001890 93 VVVCIYKKFLSSCKEQ---MPLFASSLLGIIRTLLEQTR--QEEMQILGCGTLVNFIDSQTDG-TYMFNLEGLIPKLCQL 166 (1000)
Q Consensus 93 V~l~i~~~Ll~~C~~~---l~LFa~s~L~Ii~~LL~qs~--~~~l~i~a~~tf~~F~~~q~D~-~y~~~ye~fV~~f~~m 166 (1000)
.++.++..+......+ +.-++..++..+...|. .. ++++|..++..|..++..-.+. .-...-+.+++.+++.
T Consensus 154 ~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~ 232 (861)
T 2bpt_A 154 ASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQ-STETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEA 232 (861)
T ss_dssp HHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHS-TTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHH
Confidence 4566777777654433 34466667766666776 33 6778888888887765321111 0000113467777765
Q ss_pred hHhcCchHHHHHHHHHHHHHHHHhHhhhccccccccccc-hHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhccc
Q 001890 167 AQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFD-KIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNE 245 (1000)
Q Consensus 167 a~~~~~de~~~rlR~AGLqAL~~vV~~~~e~shis~q~D-~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~ 245 (1000)
+. .++ ...|.+++++|..++..... .+...+. .|++.++..+.+. |
T Consensus 233 ~~--~~~---~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~~~~~~~~~~~-----~--------------------- 279 (861)
T 2bpt_A 233 TQ--AED---IEVQAAAFGCLCKIMSKYYT--FMKPYMEQALYALTIATMKSP-----N--------------------- 279 (861)
T ss_dssp HT--CSC---HHHHHHHHHHHHHHHHHHGG--GCHHHHHHTHHHHHHHHTTCS-----S---------------------
T ss_pred hc--CCC---HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC-----c---------------------
Confidence 53 222 36788899999988876532 2223345 5555544433311 0
Q ss_pred ccCCCCCCcccccccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhh-------------------cchHHHHh
Q 001890 246 EDNDSSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKE-------------------TTTVRRVL 306 (1000)
Q Consensus 246 E~~~~~~~~~~~r~ps~~~~~~~~~~~~~~e~~e~p~vlA~~CLr~l~~~A~e-------------------~ttvr~VL 306 (1000)
++....|..++..++..... ...+..++
T Consensus 280 ---------------------------------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 326 (861)
T 2bpt_A 280 ---------------------------------DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHH
Confidence 11222333344444332100 01123444
Q ss_pred hhhhhhccC------CCCCCCCcchHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHh
Q 001890 307 EPLFQIFDA------ENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQN 380 (1000)
Q Consensus 307 epvf~~lD~------~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~~~lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~ 380 (1000)
..++..+.. ...|.. ..-|..++..+.... ..+.-..++..+.+.|.+ .++..|...+..+..++..
T Consensus 327 ~~ll~~l~~~~~d~~d~~~~~-r~~a~~~L~~l~~~~--~~~~~~~l~~~l~~~l~~----~~~~~r~~a~~~l~~i~~~ 399 (861)
T 2bpt_A 327 PNLLNLLTRQNEDPEDDDWNV-SMSAGACLQLFAQNC--GNHILEPVLEFVEQNITA----DNWRNREAAVMAFGSIMDG 399 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHH-HHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhcccccccccCcH-HHHHHHHHHHHHHHc--cHhHHHHHHHHHHHHcCC----CChhHHHHHHHHHHHHHcC
Confidence 445444421 123544 233445555554433 111122344444444443 2466676666666665532
Q ss_pred cccccc-hhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHHHHhhcccCC----CchHHHHHHHHHhh
Q 001890 381 AKLLAS-VAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGD----VGPILDVMAGVLEN 455 (1000)
Q Consensus 381 ~~~~~s-vsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA~hV~d----a~qI~DMmavmLen 455 (1000)
.+ -.+...+..++..|.+.+... +...+.+...|+|.++..++. ..-+..++..++..
T Consensus 400 ----~~~~~~~~~l~~il~~l~~~l~d~-------------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~ 462 (861)
T 2bpt_A 400 ----PDKVQRTYYVHQALPSILNLMNDQ-------------SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIG 462 (861)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHGGGCS-------------CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHHcCCC-------------cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHH
Confidence 22 122345556666666655321 355667778899999887642 34466677777777
Q ss_pred cCCCccchhhhHHHHHHHHHHHhhcCCc-ccccccCcHHHHHHHHHHhcCCC--chhhHHHHHHHHHhhcC
Q 001890 456 MSNNTVVARTTISAVHRTAQIISTIPNI-SYRNKAFPEALFHQLLLAMAHPD--HETRVGAHTVLSVVLMP 523 (1000)
Q Consensus 456 is~~~~~ar~tvsa~y~ta~i~a~~pn~-sy~~kaFP~all~qLL~am~~pD--~e~Rl~a~~If~~lL~p 523 (1000)
+...+ +....+.+...+++....+. ...-..+-+.++..|+..+-.+| +.+|..|.+.+..++.-
T Consensus 463 l~~~~---~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 463 LQDHP---KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp HTSCH---HHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred hccCh---HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 76543 33333344444454433210 00011233566777777777666 67899999988888754
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.82 E-value=0.22 Score=63.09 Aligned_cols=117 Identities=11% Similarity=0.173 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcccccCcchhhHHHHHHHHHhccCCc--ceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhcC
Q 001890 94 VVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQE--EMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMG 171 (1000)
Q Consensus 94 ~l~i~~~Ll~~C~~~l~LFa~s~L~Ii~~LL~qs~~~--~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~~ 171 (1000)
++.++..++..|+..+.-+...++..+..+|. ..+. ++++.++..|..++.......+..-++.+++.+.......
T Consensus 454 ~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~-d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~- 531 (1230)
T 1u6g_C 454 CFNMLTELVNVLPGALTQHIPVLVPGIIFSLN-DKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP- 531 (1230)
T ss_dssp HHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTT-CSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCS-
T ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHHHHc-CCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHccc-
Confidence 67788899999988877788888888888888 3443 6777788888887764433345555677888877755322
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhcc-----ccccccccchHHHHHHhhhc
Q 001890 172 NDERALRLRSAGLQVLAYMVKFMGE-----QSHMSMDFDKIISVTLENFV 216 (1000)
Q Consensus 172 ~de~~~rlR~AGLqAL~~vV~~~~e-----~shis~q~D~IVpvILeNl~ 216 (1000)
..++|..++.+|..++...++ ...+..-++.|+|.++..+.
T Consensus 532 ----~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 577 (1230)
T 1u6g_C 532 ----FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLK 577 (1230)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHS
T ss_pred ----chHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHh
Confidence 136778889999999987765 12333446888999888875
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.80 E-value=0.029 Score=63.84 Aligned_cols=308 Identities=13% Similarity=0.130 Sum_probs=161.4
Q ss_pred chhhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCch-hhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHh
Q 001890 112 FASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDG-TYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYM 190 (1000)
Q Consensus 112 Fa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~-~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~v 190 (1000)
+...++..+..+|. ..++++|..++..|..++..-.+. .....++.+++.+..+.... + .+.|.+...+|..+
T Consensus 278 ~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~---~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 278 TKTDLVPAFQNLMK-DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--N---QHVKSALASVIMGL 351 (588)
T ss_dssp HHHTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--C---HHHHHHHHTTGGGG
T ss_pred chhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--C---HHHHHHHHHHHHHH
Confidence 34455666666776 567778888888888888653322 11123556677777666422 1 36788899999888
Q ss_pred HhhhccccccccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCC
Q 001890 191 VKFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPG 270 (1000)
Q Consensus 191 V~~~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~ 270 (1000)
+...+.... ...++|.++.-+.+. +
T Consensus 352 ~~~~~~~~~----~~~l~p~l~~~l~d~-----~---------------------------------------------- 376 (588)
T 1b3u_A 352 SPILGKDNT----IEHLLPLFLAQLKDE-----C---------------------------------------------- 376 (588)
T ss_dssp HHHHCHHHH----HHHTHHHHHHHHTCS-----C----------------------------------------------
T ss_pred HHHhhHhHH----HHHHHHHHHHHhCCC-----c----------------------------------------------
Confidence 876653221 356777777666521 0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhhhcchHHHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhcCCCcchHHHH
Q 001890 271 PDPTMDTSKSPSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCN 350 (1000)
Q Consensus 271 ~~~~~e~~e~p~vlA~~CLr~l~~~A~e~ttvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~~~lvLs~ 350 (1000)
++.+.-|..+|..+............++..+...+. ...|.- ..-+..++..+...+... ...-.++..
T Consensus 377 --------~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~-d~~~~v-r~~~~~~l~~l~~~~~~~-~~~~~l~~~ 445 (588)
T 1b3u_A 377 --------PEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE-DAKWRV-RLAIIEYMPLLAGQLGVE-FFDEKLNSL 445 (588)
T ss_dssp --------HHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT-CSSHHH-HHHHHHHHHHHHHHHCGG-GCCHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc-CCCchH-HHHHHHHHHHHHHHcCHH-HHHHHHHHH
Confidence 011112222333333211101112344444444443 345655 333444554444333111 011135556
Q ss_pred HHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHH
Q 001890 351 LVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLEN 430 (1000)
Q Consensus 351 Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~ 430 (1000)
+++.|.+. ++.+|...+..+..++..-.. . ..+..++..|...+.. .+...+.....
T Consensus 446 l~~~l~d~----~~~Vr~~a~~~l~~l~~~~~~--~----~~~~~llp~l~~~~~~-------------~~~~~R~~a~~ 502 (588)
T 1b3u_A 446 CMAWLVDH----VYAIREAATSNLKKLVEKFGK--E----WAHATIIPKVLAMSGD-------------PNYLHRMTTLF 502 (588)
T ss_dssp HHHGGGCS----SHHHHHHHHHHHHHHHHHHCH--H----HHHHHTHHHHHHTTTC-------------SCHHHHHHHHH
T ss_pred HHHHhcCC----cHHHHHHHHHHHHHHHHHhCc--h----hHHHHHHHHHHHHhhC-------------CCHHHHHHHHH
Confidence 66666542 467888888777777653211 1 1234445555443211 14567778889
Q ss_pred HHHHhhcccCCCchHHHHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhcCCCchhh
Q 001890 431 CISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETR 510 (1000)
Q Consensus 431 CIg~LA~hV~da~qI~DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am~~pD~e~R 510 (1000)
||+.++..++...-...++..++..+.....--| ..+....+.+...+. ...+++.++..|...+-.+|+++|
T Consensus 503 ~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr--~~a~~~l~~l~~~~~-----~~~~~~~~~p~l~~l~~d~d~~vr 575 (588)
T 1b3u_A 503 CINVLSEVCGQDITTKHMLPTVLRMAGDPVANVR--FNVAKSLQKIGPILD-----NSTLQSEVKPILEKLTQDQDVDVK 575 (588)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHH--HHHHHHHHHHGGGSC-----HHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHH--HHHHHHHHHHHHHhc-----hhhhHHHHHHHHHHHcCCCchhHH
Confidence 9999998876543334455555555443211122 222222234442221 111223343334445678899999
Q ss_pred HHHHHHHHHhh
Q 001890 511 VGAHTVLSVVL 521 (1000)
Q Consensus 511 l~a~~If~~lL 521 (1000)
..|.+.+..+-
T Consensus 576 ~~a~~al~~l~ 586 (588)
T 1b3u_A 576 YFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999988763
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.58 E-value=0.41 Score=57.32 Aligned_cols=356 Identities=10% Similarity=0.065 Sum_probs=181.1
Q ss_pred HHHHHHHHHhcc--------------cccCcchhhHHHHHHHHHhccC--CcceeehhHhHHHHHHhcCCchhhHHhhhh
Q 001890 95 VCIYKKFLSSCK--------------EQMPLFASSLLGIIRTLLEQTR--QEEMQILGCGTLVNFIDSQTDGTYMFNLEG 158 (1000)
Q Consensus 95 l~i~~~Ll~~C~--------------~~l~LFa~s~L~Ii~~LL~qs~--~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~ 158 (1000)
+.++..|+..|. +.+.-|...++..+-.++.... +..++..+.+++...+....+ +.......
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~~~ 549 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK-DCYPAVQK 549 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS-TTHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch-hhHHHHHH
Confidence 456667777665 2244455666666666666321 235665666777666654332 22233344
Q ss_pred HHHHHHHHhHh---------cCch-HHHHHHHHHHHHHHHHhHhhhccccccccccchHHHHHHhhhccccCCCCCCccC
Q 001890 159 LIPKLCQLAQE---------MGND-ERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEG 228 (1000)
Q Consensus 159 fV~~f~~ma~~---------~~~d-e~~~rlR~AGLqAL~~vV~~~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~ 228 (1000)
+++.+.+.-.. ..+| +....+|...+.+|..++...+. ..+..-++.|+|.++.-+....
T Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~l~~~l~~~l~~~~--------- 619 (876)
T 1qgr_A 550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDALQISDVVMASLLRMFQSTA--------- 619 (876)
T ss_dssp HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHHTTHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhhHHHHHHHHHHHHHHHhcc---------
Confidence 45444443322 1122 33456788899999999877651 2223446777777766555210
Q ss_pred ccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhh-cch-HHHHh
Q 001890 229 RQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKE-TTT-VRRVL 306 (1000)
Q Consensus 229 ~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~~~~~e~~e~p~vlA~~CLr~l~~~A~e-~tt-vr~VL 306 (1000)
+ ......-+..|+..++..... +.. +..++
T Consensus 620 ------------------~------------------------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 651 (876)
T 1qgr_A 620 ------------------G------------------------------SGGVQEDALMAVSTLVEVLGGEFLKYMEAFK 651 (876)
T ss_dssp -------------------------------------------------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred ------------------C------------------------------CCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 0 001122356677777654332 222 55666
Q ss_pred hhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhcCC-CcchHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhccccc
Q 001890 307 EPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGE-NSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLA 385 (1000)
Q Consensus 307 epvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q-~~~lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~ 385 (1000)
..++..+.+...|.- ...|+.++..+...+...-+ +-.-++..+++.|.... .+..++..++.++..++.....
T Consensus 652 ~~l~~~l~~~~~~~v-r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~~~~~~~~~~l~~i~~~~g~-- 726 (876)
T 1qgr_A 652 PFLGIGLKNYAEYQV-CLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEN--VHRSVKPQILSVFGDIALAIGG-- 726 (876)
T ss_dssp HHHHHHHHHCTTHHH-HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTT--SCGGGHHHHHHHHHHHHHHHGG--
T ss_pred HHHHHHHcCcchHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCcc--ccHHhhHHHHHHHHHHHHHhch--
Confidence 666666665433433 45577777777665421110 12245566666665421 1456788888888777653221
Q ss_pred chhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHHHHhhcccCC-----------CchHHHHHHHHHh
Q 001890 386 SVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGD-----------VGPILDVMAGVLE 454 (1000)
Q Consensus 386 svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA~hV~d-----------a~qI~DMmavmLe 454 (1000)
.. ...+..++..|.+.++...+. ++ .+..+....++..+.++++.+...++. ..+....+...+.
T Consensus 727 ~~--~~~l~~~~~~l~~~~~~~~~~-~d-~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 802 (876)
T 1qgr_A 727 EF--KKYLEVVLNTLQQASQAQVDK-SD-YDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFID 802 (876)
T ss_dssp GG--GGGHHHHHHHHHHHHTCCCCT-TC-HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHH
T ss_pred hH--HHHHHHHHHHHHHHHhccCCC-CC-hHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHH
Confidence 11 224455666666666543211 10 111111235666666666655544432 1222222223333
Q ss_pred hcCCCcc-chhhhHHHHHHHHHHHhhcCCcccccccC-cHHHHHHHHH-HhcCCCchhhHHHHHHHHHh
Q 001890 455 NMSNNTV-VARTTISAVHRTAQIISTIPNISYRNKAF-PEALFHQLLL-AMAHPDHETRVGAHTVLSVV 520 (1000)
Q Consensus 455 nis~~~~-~ar~tvsa~y~ta~i~a~~pn~sy~~kaF-P~all~qLL~-am~~pD~e~Rl~a~~If~~l 520 (1000)
++...+. -...+.++..-.+.++..++...+ +.| -+.++++|+. +.-.+|+++|-.|-..+..+
T Consensus 803 ~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 803 HIAGDEDHTDGVVACAAGLIGDLCTAFGKDVL--KLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp HHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHH--HHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHH--HHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 3322221 111223333344455544432000 112 3456778888 77789999999998877665
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.15 E-value=0.1 Score=59.26 Aligned_cols=325 Identities=11% Similarity=0.119 Sum_probs=169.1
Q ss_pred eHHHHHHHHHHhcccccCcchhhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhcCc
Q 001890 93 VVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGN 172 (1000)
Q Consensus 93 V~l~i~~~Ll~~C~~~l~LFa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~~~ 172 (1000)
.+++++.++...++.+ .+...++.++..+.. +.+...|..++..+-.++.... .++ .+.+++.+.+++...
T Consensus 106 ~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~-~~~~~~R~~a~~~l~~~~~~~~--~~~--~~~l~~~l~~l~~d~-- 176 (588)
T 1b3u_A 106 KAVESLRAISHEHSPS--DLEAHFVPLVKRLAG-GDWFTSRTSACGLFSVCYPRVS--SAV--KAELRQYFRNLCSDD-- 176 (588)
T ss_dssp HHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHT-CSSHHHHHHHGGGHHHHTTTSC--HHH--HHHHHHHHHHHHTCS--
T ss_pred HHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhcC--HHH--HHHHHHHHHHHhCCC--
Confidence 4455666666554432 233445666777666 6677778888887776665433 222 356777777777422
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhccccccccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCC
Q 001890 173 DERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSF 252 (1000)
Q Consensus 173 de~~~rlR~AGLqAL~~vV~~~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~ 252 (1000)
+ ...|.+++++|..++...+...+ ...++|.++..+.++ +
T Consensus 177 ~---~~VR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d~-----~---------------------------- 216 (588)
T 1b3u_A 177 T---PMVRRAAASKLGEFAKVLELDNV----KSEIIPMFSNLASDE-----Q---------------------------- 216 (588)
T ss_dssp C---HHHHHHHHHHHHHHHHTSCHHHH----HHTHHHHHHHHHTCS-----C----------------------------
T ss_pred C---HHHHHHHHHHHHHHHHHhcHHhH----HHHHHHHHHHHhcCC-----c----------------------------
Confidence 2 35788889999888765543221 456677666544321 0
Q ss_pred CcccccccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhcchHHHHhhhhhhhccCCCCCCCCcchHHHHHHH
Q 001890 253 PDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLY 332 (1000)
Q Consensus 253 ~~~~~r~ps~~~~~~~~~~~~~~e~~e~p~vlA~~CLr~l~~~A~e~ttvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~ 332 (1000)
.+.+..|..||..++...........++..+...++ ...|.- ..-|..+|..
T Consensus 217 --------------------------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~~~~v-R~~a~~~l~~ 268 (588)
T 1b3u_A 217 --------------------------DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAE-DKSWRV-RYMVADKFTE 268 (588)
T ss_dssp --------------------------HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHT-CSSHHH-HHHHHHTHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc-CCCHHH-HHHHHHHHHH
Confidence 012223556666665432211112234444444443 344665 4556666666
Q ss_pred HHHHHhhcCCCcchHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCC
Q 001890 333 LQSLLEESGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSS 412 (1000)
Q Consensus 333 iq~l~e~~~Q~~~lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~ 412 (1000)
+...+... ...--++..+++-|.+ .++.+|...+..+..++..... ....-..+..++..+.+.++..
T Consensus 269 l~~~~~~~-~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~l~p~l~~~l~d~----- 336 (588)
T 1b3u_A 269 LQKAVGPE-ITKTDLVPAFQNLMKD----CEAEVRAAASHKVKEFCENLSA--DCRENVIMSQILPCIKELVSDA----- 336 (588)
T ss_dssp HHHHHCHH-HHHHTHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHTSCT--TTHHHHHHHTHHHHHHHHHTCS-----
T ss_pred HHHHhCcc-cchhHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHHHhCh--hhhhhHHHHHHHHHHHHHhcCC-----
Confidence 65433110 0111245555555543 2578888887777777653221 1111123444445554444211
Q ss_pred CCCccccchHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcH
Q 001890 413 SGDGMAKTNADLQYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPE 492 (1000)
Q Consensus 413 ~g~~~~~~~~~Lq~aL~~CIg~LA~hV~da~qI~DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~ 492 (1000)
+...+.+...+|+.++..+|...-..+++-.++.-+.....--| .++....+.+...+... .+.+
T Consensus 337 --------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr--~~a~~~l~~l~~~~~~~-----~~~~ 401 (588)
T 1b3u_A 337 --------NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVR--LNIISNLDCVNEVIGIR-----QLSQ 401 (588)
T ss_dssp --------CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHH--HHHHTTCHHHHHHSCHH-----HHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHH--HHHHHHHHHHHHhcCHH-----HHHH
Confidence 34667788889999988877543333444444444443211112 11121222333222111 1123
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHhh
Q 001890 493 ALFHQLLLAMAHPDHETRVGAHTVLSVVL 521 (1000)
Q Consensus 493 all~qLL~am~~pD~e~Rl~a~~If~~lL 521 (1000)
.++..|...+-.++..+|..+.+.+..+.
T Consensus 402 ~~lp~l~~~~~d~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 34444555666778888888888777764
No 11
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.99 E-value=0.41 Score=49.14 Aligned_cols=178 Identities=14% Similarity=0.155 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhHhhhccccccccccchHHHHHHhhhc-cccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcc
Q 001890 177 LRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFV-DLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDM 255 (1000)
Q Consensus 177 ~rlR~AGLqAL~~vV~~~~e~shis~q~D~IVpvILeNl~-~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~ 255 (1000)
-+.|.+|+.+|..++..... ....++.++++.+..-+. +.
T Consensus 29 w~~R~~a~~~L~~l~~~~~~--~~~~~~~~i~~~L~~~l~kd~------------------------------------- 69 (242)
T 2qk2_A 29 WTLRKESLEVLEKLLTDHPK--LENGEYGALVSALKKVITKDS------------------------------------- 69 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCSS--BCCCCCHHHHHHHHHHHHHCS-------------------------------------
T ss_pred HHHHHHHHHHHHHHHccCCC--CCCCCHHHHHHHHHHHhccCC-------------------------------------
Confidence 46788999999999976322 123457778777655442 11
Q ss_pred cccccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhh-hc-chHHHHhhhhhhhccCCCCCCCCcchHHHHHHHH
Q 001890 256 SKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAK-ET-TTVRRVLEPLFQIFDAENHWSTETGVACSVLLYL 333 (1000)
Q Consensus 256 ~~r~ps~~~~~~~~~~~~~~e~~e~p~vlA~~CLr~l~~~A~-e~-ttvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~i 333 (1000)
.......|..||..|+.... .+ ..+..++.+++..+...+. .-..-|..++..+
T Consensus 70 ----------------------~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~--~vr~~a~~aL~~~ 125 (242)
T 2qk2_A 70 ----------------------NVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKP--NVVTALREAIDAI 125 (242)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCH--HHHHHHHHHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHH
Confidence 01233468899999986433 22 2377889999999876541 0123344444443
Q ss_pred HHHHhhcCCCcchHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCC
Q 001890 334 QSLLEESGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSS 413 (1000)
Q Consensus 334 q~l~e~~~Q~~~lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~ 413 (1000)
. +.. .--.++..+...|.++ +|.+|..++.++..++.... +.......+..++.+|..++.-+
T Consensus 126 ~---~~~--~~~~ll~~l~~~l~~~----~~~vr~~~l~~l~~~l~~~~--~~~~~~~~l~~l~p~l~~~l~D~------ 188 (242)
T 2qk2_A 126 Y---AST--SLEAQQESIVESLSNK----NPSVKSETALFIARALTRTQ--PTALNKKLLKLLTTSLVKTLNEP------ 188 (242)
T ss_dssp H---TTS--CHHHHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCC--GGGCCHHHHHHHHHHHHHHHTSS------
T ss_pred H---HcC--CHHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHHHHcC--CCCccHHHHHHHHHHHHHHhcCC------
Confidence 3 221 1124556677777775 48999999999988765432 11112345667788888877321
Q ss_pred CCccccchHHHHHHHHHHHHHhhcccCC
Q 001890 414 GDGMAKTNADLQYSLENCISWLSKKVGD 441 (1000)
Q Consensus 414 g~~~~~~~~~Lq~aL~~CIg~LA~hV~d 441 (1000)
+...+.+-.+||+.++.++|.
T Consensus 189 -------~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 189 -------DPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHCH
T ss_pred -------ChHHHHHHHHHHHHHHHHcCH
Confidence 577899999999999999984
No 12
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.76 E-value=1.2 Score=52.32 Aligned_cols=306 Identities=13% Similarity=0.167 Sum_probs=168.8
Q ss_pred HHHHHHHHhcccccCcchhhHHHHHHHHHhccCCcceeehhHhHHHHHHhc-CCchhhHHh-hhhHHHHHHHHhHhcCch
Q 001890 96 CIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDS-QTDGTYMFN-LEGLIPKLCQLAQEMGND 173 (1000)
Q Consensus 96 ~i~~~Ll~~C~~~l~LFa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~-q~D~~y~~~-ye~fV~~f~~ma~~~~~d 173 (1000)
.+++.|-.-|+.+ +-.+..++..+..+|. +.++.++..++.++..+... ..+.+..+. +..+++.+..+.. .+
T Consensus 221 ~il~~l~~l~~~~-~~~~~~~l~~l~~~l~-~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~---~d 295 (591)
T 2vgl_B 221 FILDCLSNYNPKD-DREAQSICERVTPRLS-HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS---GE 295 (591)
T ss_dssp HHHHHHHTSCCCS-HHHHHHHHHHHTTCSC-SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT---SC
T ss_pred HHHHHHHHhCCCC-hHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc---CC
Confidence 4555554444332 1123455555555566 66777888888888877642 123344433 4566666666653 23
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccccccccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCC
Q 001890 174 ERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFP 253 (1000)
Q Consensus 174 e~~~rlR~AGLqAL~~vV~~~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~ 253 (1000)
..+|.+||++|..++....+ ++.+. +..+.
T Consensus 296 ---~~vr~~aL~~l~~i~~~~p~--------------~~~~~-----------------------~~~~~---------- 325 (591)
T 2vgl_B 296 ---PEVQYVALRNINLIVQKRPE--------------ILKQE-----------------------IKVFF---------- 325 (591)
T ss_dssp ---HHHHHHHHHHHHHHHHHCCS--------------TTTTC-----------------------TTTTS----------
T ss_pred ---ccHHHHHHHHHHHHHHhChH--------------HHHHH-----------------------HHhhe----------
Confidence 47899999999988754210 00000 00000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhcchHHHHhhhhhhhccCCCCCCCCcchHHHHHHHH
Q 001890 254 DMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYL 333 (1000)
Q Consensus 254 ~~~~r~ps~~~~~~~~~~~~~~e~~e~p~vlA~~CLr~l~~~A~e~ttvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~i 333 (1000)
. ...+|...-..-|.-+...+. ..++..++..+..|+...+ ..|...+...|
T Consensus 326 -------------------~---~~~d~~~Ir~~al~~L~~l~~-~~nv~~iv~~L~~~l~~~d-----~~~r~~~v~aI 377 (591)
T 2vgl_B 326 -------------------V---KYNDPIYVKLEKLDIMIRLAS-QANIAQVLAELKEYATEVD-----VDFVRKAVRAI 377 (591)
T ss_dssp -------------------C---CTTSCHHHHHHHHHHHHHTCC-SSTHHHHHHHHHHHTTSSC-----HHHHHHHHHHH
T ss_pred -------------------e---ccCChHHHHHHHHHHHHHHCC-hhhHHHHHHHHHHHHhcCC-----HHHHHHHHHHH
Confidence 0 001222333444555556666 5678889988888886542 45666666666
Q ss_pred HHHHhhcCCCcchHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCC
Q 001890 334 QSLLEESGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSS 413 (1000)
Q Consensus 334 q~l~e~~~Q~~~lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~ 413 (1000)
-.+.++-+.+.--++..|++-|... ...++..++.++..+++.....- ...+.+|...++..
T Consensus 378 ~~la~~~~~~~~~~v~~Ll~ll~~~----~~~v~~e~i~~l~~ii~~~p~~~--------~~~v~~L~~~l~~~------ 439 (591)
T 2vgl_B 378 GRCAIKVEQSAERCVSTLLDLIQTK----VNYVVQEAIVVIRDIFRKYPNKY--------ESIIATLCENLDSL------ 439 (591)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHHHHHSCSSC--------CTTHHHHHHTTTTC------
T ss_pred HHHHHhChhHHHHHHHHHHHHHccc----chHHHHHHHHHHHHHHHHCcchH--------HHHHHHHHHHHHhc------
Confidence 5555332222345667777777653 24555555555555554322211 01133444444311
Q ss_pred CCccccchHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHH
Q 001890 414 GDGMAKTNADLQYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEA 493 (1000)
Q Consensus 414 g~~~~~~~~~Lq~aL~~CIg~LA~hV~da~qI~DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~a 493 (1000)
.......++.-+||+++.++.+ ..+.+..++.++...+...|. ..+.-.+.+....|.. -..
T Consensus 440 ------~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~--~~l~a~~Kl~~~~p~~-------~~~ 501 (591)
T 2vgl_B 440 ------DEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQL--TLLTAIVKLFLKKPSE-------TQE 501 (591)
T ss_dssp ------CSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHH--HHHHHHHHHHTTCCST-------THH
T ss_pred ------cCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHH--HHHHHHHHHHhcCchH-------HHH
Confidence 1345578889999999999976 357777888777754433333 2233334455333321 124
Q ss_pred HHHHHHHHh-c-CCCchhhHHHHHHHHHh
Q 001890 494 LFHQLLLAM-A-HPDHETRVGAHTVLSVV 520 (1000)
Q Consensus 494 ll~qLL~am-~-~pD~e~Rl~a~~If~~l 520 (1000)
.+..+|... - ++|+|+|--|...+..+
T Consensus 502 ~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 502 LVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 556666654 3 47899999998776665
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.04 E-value=0.78 Score=50.28 Aligned_cols=115 Identities=16% Similarity=0.197 Sum_probs=74.2
Q ss_pred eHHHHHHHHHHhc-ccccCcchhhHHHHHHHHHhccC-CcceeehhHhHHHHHHhcCCc---hhhHHhhhhHHHHHHHHh
Q 001890 93 VVVCIYKKFLSSC-KEQMPLFASSLLGIIRTLLEQTR-QEEMQILGCGTLVNFIDSQTD---GTYMFNLEGLIPKLCQLA 167 (1000)
Q Consensus 93 V~l~i~~~Ll~~C-~~~l~LFa~s~L~Ii~~LL~qs~-~~~l~i~a~~tf~~F~~~q~D---~~y~~~ye~fV~~f~~ma 167 (1000)
.++.++..|...+ ++.+.-+...++..+..+|.... ++++|..++.++..++..-.+ ..-.+ +.+++.+.+..
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~l~~~l~~~~ 226 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVCEAT 226 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH--HHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHhc
Confidence 5788888998877 55567777888888888888332 678888888888775432111 11111 22466655543
Q ss_pred HhcCchHHHHHHHHHHHHHHHHhHhhhccccccccccc-hHHHHHHhhhc
Q 001890 168 QEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFD-KIISVTLENFV 216 (1000)
Q Consensus 168 ~~~~~de~~~rlR~AGLqAL~~vV~~~~e~shis~q~D-~IVpvILeNl~ 216 (1000)
. ..+ ...|.+.+++|..++....+ .+...+. .+++.++..+.
T Consensus 227 ~--~~~---~~vr~~~~~~l~~l~~~~~~--~~~~~~~~~l~~~~~~~~~ 269 (462)
T 1ibr_B 227 Q--CPD---TRVRVAALQNLVKIMSLYYQ--YMETYMGPALFAITIEAMK 269 (462)
T ss_dssp T--CSS---HHHHHHHHHHHHHHHHHCGG--GCTTTTTTTHHHHHHHHHH
T ss_pred C--CCC---HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHc
Confidence 2 223 36788899999988876432 2334466 88888776664
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.27 E-value=1.5 Score=48.02 Aligned_cols=313 Identities=13% Similarity=0.078 Sum_probs=160.2
Q ss_pred hHHHHHHHHHhccC-CcceeehhHhHHHHHHhcCCchhhHHhh--hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhH
Q 001890 115 SLLGIIRTLLEQTR-QEEMQILGCGTLVNFIDSQTDGTYMFNL--EGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMV 191 (1000)
Q Consensus 115 s~L~Ii~~LL~qs~-~~~l~i~a~~tf~~F~~~q~D~~y~~~y--e~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV 191 (1000)
.++..+-.+|. +. +++++..++..+..++.... +..+.+ .++|+.+.++.... + ..+|..++.+|..+.
T Consensus 64 ~~i~~L~~~L~-~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~lL~~~--~---~~vr~~a~~~L~~l~ 135 (450)
T 2jdq_A 64 GVVARFVEFLK-RKENCTLQFESAWVLTNIASGNS--LQTRIVIQAGAVPIFIELLSSE--F---EDVQEQAVWALGNIA 135 (450)
T ss_dssp THHHHHHHHHT-CTTCHHHHHHHHHHHHHHHSSCH--HHHHHHHHTTHHHHHHHHTTCS--C---HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHC-CCCCHHHHHHHHHHHHHHhcCCH--HHHHHHHhCCCHHHHHHHHcCC--C---HHHHHHHHHHHHHHc
Confidence 45555556676 45 78899999998888875322 222222 57899999998743 2 367888888888876
Q ss_pred hhhccccccccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCCC
Q 001890 192 KFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGP 271 (1000)
Q Consensus 192 ~~~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~ 271 (1000)
....+....-. -..++|.++.-+..+
T Consensus 136 ~~~~~~~~~~~-~~~~i~~L~~~l~~~----------------------------------------------------- 161 (450)
T 2jdq_A 136 GDSTMCRDYVL-DCNILPPLLQLFSKQ----------------------------------------------------- 161 (450)
T ss_dssp TTCHHHHHHHH-HTTCHHHHHHHTTSC-----------------------------------------------------
T ss_pred cCCHHHHHHHH-HCCCHHHHHHHhcCC-----------------------------------------------------
Confidence 53211000000 012345544433310
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhh-h--hcchHHHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhcCCC-c---
Q 001890 272 DPTMDTSKSPSYWSRVCLDNMARLA-K--ETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGEN-S--- 344 (1000)
Q Consensus 272 ~~~~e~~e~p~vlA~~CLr~l~~~A-~--e~ttvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~-~--- 344 (1000)
...+....|..||.+|..-. . ....+..++..++..+.+.+ ......+...+.++....... .
T Consensus 162 -----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~ 231 (450)
T 2jdq_A 162 -----NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSD-----TDVLADACWALSYLSDGPNDKIQAVI 231 (450)
T ss_dssp -----CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCC-----HHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 01123445667777776322 1 12224667777777776543 222222333333332111000 0
Q ss_pred -chHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHH
Q 001890 345 -HLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNAD 423 (1000)
Q Consensus 345 -~lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~ 423 (1000)
.-++..+++.|.+. ++.++...+.++..++........ .+++ .+++..|.+.++.+ +..
T Consensus 232 ~~~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~-~~~~--~~~l~~L~~ll~~~-------------~~~ 291 (450)
T 2jdq_A 232 DAGVCRRLVELLMHN----DYKVVSPALRAVGNIVTGDDIQTQ-VILN--CSALQSLLHLLSSP-------------KES 291 (450)
T ss_dssp HTTTHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHH-HHHT--TTHHHHHHHHTTCS-------------SHH
T ss_pred HcCcHHHHHHHHCCC----chhHHHHHHHHHHHHhhCChHHHH-HHHH--CccHHHHHHHHcCC-------------CHH
Confidence 12566777777653 577887777777766643211100 1111 13455555555431 356
Q ss_pred HHHHHHHHHHHhhcccCCC-chHH--HHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhc-CCcccccccCcHHHHHHHH
Q 001890 424 LQYSLENCISWLSKKVGDV-GPIL--DVMAGVLENMSNNTVVARTTISAVHRTAQIISTI-PNISYRNKAFPEALFHQLL 499 (1000)
Q Consensus 424 Lq~aL~~CIg~LA~hV~da-~qI~--DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~-pn~sy~~kaFP~all~qLL 499 (1000)
++.....+|+.++.+-.+. +.+. ..+..++.-+... ..+.+..+++..+++.... |. .....+-...+..|+
T Consensus 292 vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~--~~~~l~~~~~i~~L~ 367 (450)
T 2jdq_A 292 IKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSGGSAE--QIKYLVELGCIKPLC 367 (450)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHH--HHHHHHHCCCHHHHH
Confidence 6777888999998632111 1111 1222222222221 1123334444444554321 10 000001122455577
Q ss_pred HHhcCCCchhhHHHHHHHHHhhcC
Q 001890 500 LAMAHPDHETRVGAHTVLSVVLMP 523 (1000)
Q Consensus 500 ~am~~pD~e~Rl~a~~If~~lL~p 523 (1000)
..+-.+|+++|..|...+..++..
T Consensus 368 ~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 368 DLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHh
Confidence 777788999999999999888754
No 15
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.46 E-value=2 Score=45.13 Aligned_cols=139 Identities=13% Similarity=0.134 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhhh--hcc--hHHHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhcCCCcc----hHHHHHHH
Q 001890 282 SYWSRVCLDNMARLAK--ETT--TVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSH----LLLCNLVK 353 (1000)
Q Consensus 282 ~vlA~~CLr~l~~~A~--e~t--tvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~~~----lvLs~Lv~ 353 (1000)
...|..||..|+...+ .+. ....+|-+++..+...+. .-..-|..++..+...+ ..-.-| .++..++.
T Consensus 78 ~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~--~V~~aa~~al~~i~~~~--~~~~~~~~l~~ll~~l~~ 153 (249)
T 2qk1_A 78 VALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKP--SVIEAIRKALLTICKYY--DPLASSGRNEDMLKDILE 153 (249)
T ss_dssp HHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCH--HHHHHHHHHHHHHHHHS--CTTCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHc--cccccCCcHHHHHHHHHH
Confidence 3468899999986443 454 467788999999876551 11122333443333322 111122 56667777
Q ss_pred hhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHH-HHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHH
Q 001890 354 HLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTI-NDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCI 432 (1000)
Q Consensus 354 HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvl-sdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CI 432 (1000)
.|.|+ .|.+|...+.++..++......+. .+...+ ..++.+|.+++.-+ +..++.+=.+|+
T Consensus 154 ~l~~k----~~~vk~~al~~l~~~~~~~~~~~~-~l~~~l~~~iip~l~~~l~D~-------------~~~VR~aA~~~l 215 (249)
T 2qk1_A 154 HMKHK----TPQIRMECTQLFNASMKEEKDGYS-TLQRYLKDEVVPIVIQIVNDT-------------QPAIRTIGFESF 215 (249)
T ss_dssp HTTCS----SHHHHHHHHHHHHHHHHHCCSCSH-HHHHHHTTTHHHHHHHHHTCS-------------SHHHHHHHHHHH
T ss_pred HHcCC----ChHHHHHHHHHHHHHHHHcCCcch-hHHHHHHHHHHHHHHHHhcCC-------------CHHHHHHHHHHH
Confidence 77775 489999999999888875543322 223456 67777777777321 578999999999
Q ss_pred HHhhcccCCC
Q 001890 433 SWLSKKVGDV 442 (1000)
Q Consensus 433 g~LA~hV~da 442 (1000)
+.++.+||..
T Consensus 216 ~~i~~~vG~~ 225 (249)
T 2qk1_A 216 AILIKIFGMN 225 (249)
T ss_dssp HHHHHHHCSG
T ss_pred HHHHHHhCHH
Confidence 9999999974
No 16
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=93.17 E-value=3.5 Score=49.08 Aligned_cols=196 Identities=12% Similarity=0.140 Sum_probs=114.5
Q ss_pred HHHHHHHHHhhhhcchHHHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhccCCCCCch
Q 001890 286 RVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKSVAKQPL 365 (1000)
Q Consensus 286 ~~CLr~l~~~A~e~ttvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~~~lvLs~Lv~HLd~k~v~~~p~ 365 (1000)
...|.=+...++ ..++..|++-+..|+... +..|...+.+.|-.+.++-..+.--.+..|++-|...+ ..
T Consensus 387 ~~aL~lL~~l~~-~~Nv~~Iv~eL~~yl~~~-----d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~----~~ 456 (621)
T 2vgl_A 387 QRAVDLLYAMCD-RSNAQQIVAEMLSYLETA-----DYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAG----DY 456 (621)
T ss_dssp HHHHHHHHHHCC-HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHG----GG
T ss_pred HHHHHHHHHHcC-hhhHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc----cc
Confidence 334444555566 567999999999998653 25677777777766665544456667788888886532 22
Q ss_pred hhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHHHHhhcccCCCchH
Q 001890 366 AQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGDVGPI 445 (1000)
Q Consensus 366 ~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA~hV~da~qI 445 (1000)
+...++.++..++... +.+- -.+ +++|-..++... ....+....-=+||+++..+.++..+
T Consensus 457 v~~ev~~~l~~ii~~~---~~~~-~~~----~~~l~~~l~~~~-----------~~~~li~~~~wilGEy~~~~~~~~~~ 517 (621)
T 2vgl_A 457 VSEEVWYRVIQIVINR---DDVQ-GYA----AKTVFEALQAPA-----------CHENLVKVGGYILGEFGNLIAGDPRS 517 (621)
T ss_dssp SCSHHHHHHHHHHGGG---CSCH-HHH----HHHHHHHHTSSS-----------CCHHHHHHHHHHHHHHTHHHHSSTTS
T ss_pred chHHHHHHHHHHHhCC---hhHH-HHH----HHHHHHHHcCcc-----------chHHHHHHHHHHhcchHHHhcccCCC
Confidence 4445565655555322 1110 011 334434443211 12344445559999999999776532
Q ss_pred --HHHHHHHHhhcCCCccchhhh-HHHHHHHHHHHhhcCCcccccccCcH--HHHHHHHH-Hhc--CCCchhhHHHHHHH
Q 001890 446 --LDVMAGVLENMSNNTVVARTT-ISAVHRTAQIISTIPNISYRNKAFPE--ALFHQLLL-AMA--HPDHETRVGAHTVL 517 (1000)
Q Consensus 446 --~DMmavmLenis~~~~~ar~t-vsa~y~ta~i~a~~pn~sy~~kaFP~--all~qLL~-am~--~pD~e~Rl~a~~If 517 (1000)
.|.+..+..++...+...|.. +.+. +.+.. .+|+ ..+..+|. ..- ++|+|+|--|...+
T Consensus 518 ~p~~~l~~l~~~~~~~~~~v~~~~Lta~---~Kl~~----------~~p~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~ 584 (621)
T 2vgl_A 518 SPLIQFNLLHSKFHLCSVPTRALLLSTY---IKFVN----------LFPEVKATIQDVLRSDSQLKNADVELQQRAVEYL 584 (621)
T ss_dssp CHHHHHHHHHHHHTTSCHHHHHHHHHHH---HHHHH----------HCGGGHHHHHHHHSSHHHHSCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHH---HHHHH----------HChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 577777777777665544532 2222 23332 2343 23444554 334 89999999999888
Q ss_pred HHhhcC
Q 001890 518 SVVLMP 523 (1000)
Q Consensus 518 ~~lL~p 523 (1000)
..+-.+
T Consensus 585 ~Ll~~~ 590 (621)
T 2vgl_A 585 RLSTVA 590 (621)
T ss_dssp HHHHSS
T ss_pred HHHccC
Confidence 776433
No 17
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.69 E-value=0.17 Score=51.96 Aligned_cols=130 Identities=8% Similarity=0.052 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHHHHhhhcCCceeeHHHHHHHHHHhcccccCcchhhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCC
Q 001890 69 PKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQT 148 (1000)
Q Consensus 69 ~KIg~yLekR~~kDl~r~r~G~V~V~l~i~~~Ll~~C~~~l~LFa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~ 148 (1000)
.|++.-+.+.+...=|+.|.+ ++..+.+++..|++...-....++.++..+|....+...+..|+.++..++..-.
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~----a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKE----SLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHH----HHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred ccCCHHHHhhhccCCHHHHHH----HHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 344444555555556666655 5668889999887654433467888888888425678888899999999997532
Q ss_pred chhhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHhhhccccccccccchHHHHHHhhhc
Q 001890 149 DGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFV 216 (1000)
Q Consensus 149 D~~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~~~~e~shis~q~D~IVpvILeNl~ 216 (1000)
..+....+.+++.+.+..... ..++|.++..||.+++.... ++.++|.++.-+.
T Consensus 90 -~~~~~~~~~ilp~ll~~l~d~-----~~~vr~~a~~aL~~~~~~~~--------~~~ll~~l~~~l~ 143 (242)
T 2qk2_A 90 -KRFSNYASACVPSLLEKFKEK-----KPNVVTALREAIDAIYASTS--------LEAQQESIVESLS 143 (242)
T ss_dssp -GGGHHHHHHHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHTTSC--------HHHHHHHHHHHTT
T ss_pred -hhHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHc
Confidence 245555577788877766432 24789999999999986432 7888999887776
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=92.50 E-value=2 Score=47.03 Aligned_cols=314 Identities=10% Similarity=0.080 Sum_probs=155.5
Q ss_pred hhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHHhh--hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhH
Q 001890 114 SSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNL--EGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMV 191 (1000)
Q Consensus 114 ~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~~y--e~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV 191 (1000)
..++..+-.+|. +.+++++..++..|...+... ..+.... .+.++.+.++.....+ ..+|..++.+|..+.
T Consensus 106 ~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~~l~~~~~----~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 106 AGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDS--TMCRDYVLDCNILPPLLQLFSKQNR----LTMTRNAVWALSNLC 178 (450)
T ss_dssp TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTTSCCC----HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCC--HHHHHHHHHCCCHHHHHHHhcCCCC----HHHHHHHHHHHHHHh
Confidence 456777777888 678889999999888777532 2222211 4688888888764222 357778888888887
Q ss_pred hhhccccccccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCCC
Q 001890 192 KFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGP 271 (1000)
Q Consensus 192 ~~~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~ 271 (1000)
....... -..-+..++|.++.-+..+ |
T Consensus 179 ~~~~~~~-~~~~~~~~l~~L~~~l~~~-----~----------------------------------------------- 205 (450)
T 2jdq_A 179 RGKSPPP-EFAKVSPCLNVLSWLLFVS-----D----------------------------------------------- 205 (450)
T ss_dssp CCSSSCC-CGGGTGGGHHHHHHHTTCC-----C-----------------------------------------------
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHHccC-----C-----------------------------------------------
Confidence 5431110 0111356677776655421 0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhhh-cch--HHHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhcCCC-----
Q 001890 272 DPTMDTSKSPSYWSRVCLDNMARLAKE-TTT--VRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGEN----- 343 (1000)
Q Consensus 272 ~~~~e~~e~p~vlA~~CLr~l~~~A~e-~tt--vr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~----- 343 (1000)
+.....|-.+|.++.....+ ... -..++.+++..+.+.+ |.- ..-|..++..+ .......
T Consensus 206 -------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v-~~~a~~~L~~l---~~~~~~~~~~~~ 273 (450)
T 2jdq_A 206 -------TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND-YKV-VSPALRAVGNI---VTGDDIQTQVIL 273 (450)
T ss_dssp -------HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC-HHH-HHHHHHHHHHH---TTSCHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc-hhH-HHHHHHHHHHH---hhCChHHHHHHH
Confidence 01122344455555421110 000 1235666666665322 322 23333333333 2211100
Q ss_pred cchHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHH
Q 001890 344 SHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNAD 423 (1000)
Q Consensus 344 ~~lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~ 423 (1000)
..-++..+++.|.+. ++.+|...+.++..++........ .+++ .+++..|...+... +..
T Consensus 274 ~~~~l~~L~~ll~~~----~~~vr~~a~~~L~~l~~~~~~~~~-~~~~--~~~l~~L~~~l~~~-------------~~~ 333 (450)
T 2jdq_A 274 NCSALQSLLHLLSSP----KESIKKEACWTISNITAGNRAQIQ-TVID--ANIFPALISILQTA-------------EFR 333 (450)
T ss_dssp TTTHHHHHHHHTTCS----SHHHHHHHHHHHHHHTTSCHHHHH-HHHH--TTHHHHHHHHHHHS-------------CHH
T ss_pred HCccHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHH-HHHH--CCCHHHHHHHHhcC-------------CHH
Confidence 012667777777763 477888877777777652211111 1121 13333444333321 345
Q ss_pred HHHHHHHHHHHhhcccC--CCchHHH--HHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCccc----ccccCcHHH-
Q 001890 424 LQYSLENCISWLSKKVG--DVGPILD--VMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISY----RNKAFPEAL- 494 (1000)
Q Consensus 424 Lq~aL~~CIg~LA~hV~--da~qI~D--MmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy----~~kaFP~al- 494 (1000)
.+.....+|+.|+.+-. ..+.+.+ .+..+++-+.... .+....+.+-..+++..-++... .-..+-..|
T Consensus 334 v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~ 411 (450)
T 2jdq_A 334 TRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD--SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIE 411 (450)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSC--HHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHH
Confidence 67777788888876521 1111111 3333333333321 12222233333333322221100 001122223
Q ss_pred ----HHHHHHHhcCCCchhhHHHHHHHHHhh
Q 001890 495 ----FHQLLLAMAHPDHETRVGAHTVLSVVL 521 (1000)
Q Consensus 495 ----l~qLL~am~~pD~e~Rl~a~~If~~lL 521 (1000)
++.|....-|++.++|-.|..|+..+.
T Consensus 412 ~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 412 EAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 344555667889999999999988876
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.38 E-value=3.3 Score=47.19 Aligned_cols=334 Identities=13% Similarity=0.105 Sum_probs=166.5
Q ss_pred eHHHHHHHHHHhcc-cccC-cchhhHHHHHHHHHhccC-CcceeehhHhHHHHHHhcCCchhhHHhh--hhHHHHHHHHh
Q 001890 93 VVVCIYKKFLSSCK-EQMP-LFASSLLGIIRTLLEQTR-QEEMQILGCGTLVNFIDSQTDGTYMFNL--EGLIPKLCQLA 167 (1000)
Q Consensus 93 V~l~i~~~Ll~~C~-~~l~-LFa~s~L~Ii~~LL~qs~-~~~l~i~a~~tf~~F~~~q~D~~y~~~y--e~fV~~f~~ma 167 (1000)
-++..+++|+..-+ ..+. +....++..+-.+|. +. +++++..++..+...+... .++.... .+.|+.+.++.
T Consensus 106 ~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~-~~~~~~v~~~A~~~L~~l~~~~--~~~~~~~~~~g~i~~Lv~lL 182 (530)
T 1wa5_B 106 SATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR-ENQPEMLQLEAAWALTNIASGT--SAQTKVVVDADAVPLFIQLL 182 (530)
T ss_dssp HHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS-TTSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHhCCC--HHHHHHHHHCCCHHHHHHHH
Confidence 35555666654311 1111 222345555556666 44 7888888998887777532 2222222 57788888888
Q ss_pred HhcCchHHHHHHHHHHHHHHHHhHhhhccccccccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhccccc
Q 001890 168 QEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEED 247 (1000)
Q Consensus 168 ~~~~~de~~~rlR~AGLqAL~~vV~~~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~ 247 (1000)
... + ..+|..++.+|..+.....+....-. -..++|.++.-+...
T Consensus 183 ~~~-~----~~vr~~A~~aL~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~----------------------------- 227 (530)
T 1wa5_B 183 YTG-S----VEVKEQAIWALGNVAGDSTDYRDYVL-QCNAMEPILGLFNSN----------------------------- 227 (530)
T ss_dssp HHC-C----HHHHHHHHHHHHHHHTTCHHHHHHHH-HTTCHHHHHHGGGSC-----------------------------
T ss_pred cCC-C----HHHHHHHHHHHHHHhCCCccchHHHH-HcCcHHHHHHHhccC-----------------------------
Confidence 743 2 35777888888887643111000000 012345444433310
Q ss_pred CCCCCCcccccccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhh-h--hcchHHHHhhhhhhhccCCCCCCCCcc
Q 001890 248 NDSSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLA-K--ETTTVRRVLEPLFQIFDAENHWSTETG 324 (1000)
Q Consensus 248 ~~~~~~~~~~r~ps~~~~~~~~~~~~~~e~~e~p~vlA~~CLr~l~~~A-~--e~ttvr~VLepvf~~lD~~~~Wsp~~g 324 (1000)
..+....|..||.+|..-. . ....+..++..++..+.+.+ ..
T Consensus 228 ------------------------------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d-----~~ 272 (530)
T 1wa5_B 228 ------------------------------KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD-----TE 272 (530)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC-----HH
T ss_pred ------------------------------CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC-----HH
Confidence 0123334666777776322 1 12234566777777776543 22
Q ss_pred hHHHHHHHHHHHHhhcCCCc-----chHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHH
Q 001890 325 VACSVLLYLQSLLEESGENS-----HLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKH 399 (1000)
Q Consensus 325 fAi~vf~~iq~l~e~~~Q~~-----~lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrH 399 (1000)
.-..++..+..+........ .-++..|++.|.+. ++.++...+.++..++....... -.+++ .+++..
T Consensus 273 v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~-~~~~~--~~~l~~ 345 (530)
T 1wa5_B 273 TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE----STLVQTPALRAVGNIVTGNDLQT-QVVIN--AGVLPA 345 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS----CHHHHHHHHHHHHHHTTSCHHHH-HHHHH--TTHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC----ChhhHHHHHHHHHHHHcCCHHHH-HHHHH--cchHHH
Confidence 23333333333332111000 12466777777663 47788887777777664321111 01111 245555
Q ss_pred HHHhhcccccCCCCCCccccchHHHHHHHHHHHHHhhcccCCCchHHH-----HHHHHHhhcCCCccchhhhHHHHHHHH
Q 001890 400 LRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGDVGPILD-----VMAGVLENMSNNTVVARTTISAVHRTA 474 (1000)
Q Consensus 400 LRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA~hV~da~qI~D-----MmavmLenis~~~~~ar~tvsa~y~ta 474 (1000)
|...++.+ +...+.....+|+.|+.+-+ +++.. .+..++.-+... ..+....+.+..+
T Consensus 346 L~~lL~~~-------------~~~vr~~A~~aL~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 346 LRLLLSSP-------------KENIKKEACWTISNITAGNT--EQIQAVIDANLIPPLVKLLEVA--EYKTKKEACWAIS 408 (530)
T ss_dssp HHHHTTCS-------------CHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHH
T ss_pred HHHHHcCC-------------CHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence 55555431 35677778889999986422 22111 111121111111 1123334444444
Q ss_pred HHHhhcCCc-ccccccCcHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcC
Q 001890 475 QIISTIPNI-SYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVLMP 523 (1000)
Q Consensus 475 ~i~a~~pn~-sy~~kaFP~all~qLL~am~~pD~e~Rl~a~~If~~lL~p 523 (1000)
++....... .+...-.-...+..|+..+-++|+++|..|...+..++..
T Consensus 409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 554321100 0000001112455577777789999999999999998754
No 20
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.29 E-value=9 Score=45.26 Aligned_cols=199 Identities=13% Similarity=0.091 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHhhhhcchHHHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhccCC
Q 001890 281 PSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKSV 360 (1000)
Q Consensus 281 p~vlA~~CLr~l~~~A~e~ttvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~~~lvLs~Lv~HLd~k~v 360 (1000)
.+..|..+|..| +. ..++..+++.++.|+...+ ..|...+...|..+.++-..+..-.+..+++-|...+
T Consensus 366 Ir~~alelL~~l---~~-~~nv~~iv~eL~~~l~~~d-----~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~- 435 (618)
T 1w63_A 366 IKRRAMELSFAL---VN-GNNIRGMMKELLYFLDSCE-----PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG- 435 (618)
T ss_dssp HHHHHHHHHHHH---CC-SSSTHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG-
T ss_pred HHHHHHHHHHHH---cc-cccHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc-
Confidence 334455666665 44 4568889999999987532 5788888888877776533455566777887776532
Q ss_pred CCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHHHHhhcccC
Q 001890 361 AKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVG 440 (1000)
Q Consensus 361 ~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA~hV~ 440 (1000)
..++..++.++..+.+.. +... -.++..|++.|.. .. . ...+..++.-|||+++..+.
T Consensus 436 ---~~v~~~~~~~l~~ii~~~---p~l~-~~~v~~L~~~l~~----~~-----~------~~~~~~~~~wilGEy~~~i~ 493 (618)
T 1w63_A 436 ---SYVRDDAVPNLIQLITNS---VEMH-AYTVQRLYKAILG----DY-----S------QQPLVQVAAWCIGEYGDLLV 493 (618)
T ss_dssp ---GGSCSSHHHHHHHHHHHS---CSTH-HHHHHHHHHHHHH----CC-----S------CSHHHHHHHHHHHHHHHHHT
T ss_pred ---chhHHHHHHHHHHHHhcC---hhHH-HHHHHHHHHHHhc----cc-----c------cHHHHHHHHHHHhhhHHHhc
Confidence 344556666666665532 2220 1233334444432 11 0 12233478999999999885
Q ss_pred CC------------chHHHHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHH-HhcCCCc
Q 001890 441 DV------------GPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLL-AMAHPDH 507 (1000)
Q Consensus 441 da------------~qI~DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~-am~~pD~ 507 (1000)
+. ..+.+.+..++.+... +...|. ..+--.+.+....|.. ...+.++|. ..-++|+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vr~--~~lta~~Kl~~~~~~~--------~~~l~~~L~~~~~~~d~ 562 (618)
T 1w63_A 494 SGQCEEEEPIQVTEDEVLDILESVLISNMS-TSVTRG--YALTAIMKLSTRFTCT--------VNRIKKVVSIYGSSIDV 562 (618)
T ss_dssp TCCCSSSCCCCCCHHHHHHHHHHHHHSTTC-CHHHHH--HHHHHHHHHHTTCSSC--------HHHHHHHHHHHTTCSCH
T ss_pred ccccccccccCCCHHHHHHHHHHHHhccCC-CHHHHH--HHHHHHHHHHHhCcch--------HHHHHHHHHHhcCCCCH
Confidence 42 2345666665554321 222232 2222223444333321 234444544 5567889
Q ss_pred hhhHHHHHHHHHhhc
Q 001890 508 ETRVGAHTVLSVVLM 522 (1000)
Q Consensus 508 e~Rl~a~~If~~lL~ 522 (1000)
|+|--|...+..+-.
T Consensus 563 evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 563 ELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999998877643
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=92.02 E-value=5.3 Score=45.33 Aligned_cols=310 Identities=11% Similarity=0.094 Sum_probs=151.9
Q ss_pred HHHhccCCcceeehhHhHHHHHHhcCC-chhhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHhhhcccccc
Q 001890 122 TLLEQTRQEEMQILGCGTLVNFIDSQT-DGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHM 200 (1000)
Q Consensus 122 ~LL~qs~~~~l~i~a~~tf~~F~~~q~-D~~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~~~~e~shi 200 (1000)
.+|. +.+++.+..|+..|...+.... +..-.-.-.++|+.+.++...... ..+|..++.+|..+.....+....
T Consensus 81 ~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~----~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 81 GGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF----PQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC----HHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC----HHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3455 6788899999999988876543 222222235889999998864432 246777888888776521110000
Q ss_pred ccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCCCCCCCCCCCC
Q 001890 201 SMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGPDPTMDTSKS 280 (1000)
Q Consensus 201 s~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~~~~~e~~e~ 280 (1000)
-.+ ..+||.++.-+..+ ..+
T Consensus 156 ~~~-~g~i~~L~~lL~~~-----------------------------------------------------------~~~ 175 (528)
T 4b8j_A 156 VID-HGAVPIFVKLLGSS-----------------------------------------------------------SDD 175 (528)
T ss_dssp HHH-TTHHHHHHHHTTCS-----------------------------------------------------------CHH
T ss_pred HHh-CCcHHHHHHHhcCC-----------------------------------------------------------CHH
Confidence 000 02355554433311 013
Q ss_pred hHHHHHHHHHHHHHhhhh-cchHH--HHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhcCCCcch----HHHHHHH
Q 001890 281 PSYWSRVCLDNMARLAKE-TTTVR--RVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHL----LLCNLVK 353 (1000)
Q Consensus 281 p~vlA~~CLr~l~~~A~e-~ttvr--~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~~~l----vLs~Lv~ 353 (1000)
....|..+|.+|+.-... ...+. .++.+++..+..+..| .....+...+..+.......... ++..|++
T Consensus 176 v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~----~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ 251 (528)
T 4b8j_A 176 VREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKL----SMLRNATWTLSNFCRGKPQPSFEQTRPALPALAR 251 (528)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCH----HHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCH----HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 445667777777643221 11122 3677888888443322 22223333333333322223333 4555555
Q ss_pred hhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHHH
Q 001890 354 HLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCIS 433 (1000)
Q Consensus 354 HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg 433 (1000)
.|.+. ++.++...+.++..|+........ .+++ .+++..|-..+... +...+.....+|+
T Consensus 252 lL~~~----~~~v~~~a~~aL~~l~~~~~~~~~-~~~~--~g~v~~Lv~lL~~~-------------~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 252 LIHSN----DEEVLTDACWALSYLSDGTNDKIQ-AVIE--AGVCPRLVELLLHP-------------SPSVLIPALRTVG 311 (528)
T ss_dssp HTTCC----CHHHHHHHHHHHHHHTSSCHHHHH-HHHH--TTCHHHHHHHTTCS-------------CHHHHHHHHHHHH
T ss_pred HHCCC----CHHHHHHHHHHHHHHHcCCHHHHH-HHHH--cCHHHHHHHHHcCC-------------ChhHHHHHHHHHH
Confidence 55442 577787777777666643211110 1111 12344444444321 3466777788899
Q ss_pred HhhcccCCCch-HH--HHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhcCCCchhh
Q 001890 434 WLSKKVGDVGP-IL--DVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETR 510 (1000)
Q Consensus 434 ~LA~hV~da~q-I~--DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am~~pD~e~R 510 (1000)
.++.+-.+..+ +. ..+..++.-+... .-......+++..+++.+.-+. .....+-..++..|+..+-.+|+++|
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~A~~~L~nl~~~~~~--~~~~~~~~~~i~~L~~lL~~~~~~v~ 388 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQN-LKKSIKKEACWTISNITAGNKD--QIQAVINAGIIGPLVNLLQTAEFDIK 388 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHTSCHH--HHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCC-CcHHHHHHHHHHHHHHHCCCHH--HHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 98874322111 00 0122222222321 0112223334444444421110 00000111234445556666799999
Q ss_pred HHHHHHHHHhhcC
Q 001890 511 VGAHTVLSVVLMP 523 (1000)
Q Consensus 511 l~a~~If~~lL~p 523 (1000)
..|...+..+...
T Consensus 389 ~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 389 KEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 9999988887543
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=91.75 E-value=2.9 Score=47.48 Aligned_cols=333 Identities=14% Similarity=0.132 Sum_probs=162.9
Q ss_pred HHHHHHHHHHhcc-ccc-CcchhhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHHhh--hhHHHHHHHHhHh
Q 001890 94 VVCIYKKFLSSCK-EQM-PLFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNL--EGLIPKLCQLAQE 169 (1000)
Q Consensus 94 ~l~i~~~Ll~~C~-~~l-~LFa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~~y--e~fV~~f~~ma~~ 169 (1000)
++..+++|+...+ ... .+....++..+-.+|....+++++..++..+...+.... ++...+ .+.|+.+.++...
T Consensus 94 A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~lL~~ 171 (528)
T 4b8j_A 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS--ENTKVVIDHGAVPIFVKLLGS 171 (528)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH--HHHHHHHhCCcHHHHHHHhcC
Confidence 4556666665433 221 123334555556677733348899999999988875322 222222 3688999988865
Q ss_pred cCchHHHHHHHHHHHHHHHHhHhhhccccccccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCC
Q 001890 170 MGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDND 249 (1000)
Q Consensus 170 ~~~de~~~rlR~AGLqAL~~vV~~~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~ 249 (1000)
.. ..+|..++.+|..+.....+....-.+ ..++|.++.-+...
T Consensus 172 ~~-----~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~------------------------------- 214 (528)
T 4b8j_A 172 SS-----DDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEH------------------------------- 214 (528)
T ss_dssp SC-----HHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTT-------------------------------
T ss_pred CC-----HHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcC-------------------------------
Confidence 32 267778888888776421100000000 01344444333210
Q ss_pred CCCCcccccccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhh--hcchHHHHhhhhhhhccCCCCCCCCcchHH
Q 001890 250 SSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARLAK--ETTTVRRVLEPLFQIFDAENHWSTETGVAC 327 (1000)
Q Consensus 250 ~~~~~~~~r~ps~~~~~~~~~~~~~~e~~e~p~vlA~~CLr~l~~~A~--e~ttvr~VLepvf~~lD~~~~Wsp~~gfAi 327 (1000)
...+....|-.||.+|..... ....+..++..++..+.+.+ .....
T Consensus 215 ---------------------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~ 262 (528)
T 4b8j_A 215 ---------------------------TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSND-----EEVLT 262 (528)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCC-----HHHHH
T ss_pred ---------------------------CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCC-----HHHHH
Confidence 001233345566666654211 01123456666666664432 23333
Q ss_pred HHHHHHHHHHhhcCCC-cc----hHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHH
Q 001890 328 SVLLYLQSLLEESGEN-SH----LLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRK 402 (1000)
Q Consensus 328 ~vf~~iq~l~e~~~Q~-~~----lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRk 402 (1000)
.++..+..+....... .. -++..|++.|.+. ++.++...+.++..|+........ .+++ .+++..|..
T Consensus 263 ~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~----~~~v~~~a~~~L~nl~~~~~~~~~-~~~~--~~~l~~L~~ 335 (528)
T 4b8j_A 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP----SPSVLIPALRTVGNIVTGDDAQTQ-CIID--HQALPCLLS 335 (528)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHH-HHHT--TTHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC----ChhHHHHHHHHHHHHHcCCHHHHH-HHHH--hhhHHHHHH
Confidence 4444444443211100 01 1466777777663 467777777777666642211110 1111 233444444
Q ss_pred hhcccccCCCCCCccccchHHHHHHHHHHHHHhhcccCCCchHHHH-----HHHHHhhcCCCccchhhhHHHHHHHHHHH
Q 001890 403 CLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGDVGPILDV-----MAGVLENMSNNTVVARTTISAVHRTAQII 477 (1000)
Q Consensus 403 slq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA~hV~da~qI~DM-----mavmLenis~~~~~ar~tvsa~y~ta~i~ 477 (1000)
.++... +..++.....+|+.|+.+ ...++..+ +..+++-+... .......+++-.+++.
T Consensus 336 lL~~~~------------~~~v~~~A~~~L~nl~~~--~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~ 399 (528)
T 4b8j_A 336 LLTQNL------------KKSIKKEACWTISNITAG--NKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNAT 399 (528)
T ss_dssp HHHSCC------------CHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHH
T ss_pred HHcCCC------------cHHHHHHHHHHHHHHHCC--CHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 444210 345666677788888763 22222111 11222222211 1123333333334444
Q ss_pred hhc-CC-cccccccCcHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcC
Q 001890 478 STI-PN-ISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVLMP 523 (1000)
Q Consensus 478 a~~-pn-~sy~~kaFP~all~qLL~am~~pD~e~Rl~a~~If~~lL~p 523 (1000)
... +. ..|- .-...+..|+..+-.+|+++|..|...+..|+.-
T Consensus 400 ~~~~~~~~~~l---~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (528)
T 4b8j_A 400 SGGSHDQIKYL---VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKV 444 (528)
T ss_dssp HHSCHHHHHHH---HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHH---HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 221 10 1000 0012355677777889999999999999999754
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=89.04 E-value=6.6 Score=44.74 Aligned_cols=305 Identities=12% Similarity=0.097 Sum_probs=151.7
Q ss_pred HHHhccCCcceeehhHhHHHHHHhcCCch--hhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHhhhccccc
Q 001890 122 TLLEQTRQEEMQILGCGTLVNFIDSQTDG--TYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSH 199 (1000)
Q Consensus 122 ~LL~qs~~~~l~i~a~~tf~~F~~~q~D~--~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~~~~e~sh 199 (1000)
..|. +.+++.+..|+..|..++....+. ..+. -.++|+.+.++.....+ ..+|..++.+|..+.....+...
T Consensus 94 ~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~-~~g~i~~Lv~~L~~~~~----~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 94 QQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVI-QAGVVPRLVEFMRENQP----EMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp HHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHH-HTTCHHHHHHTTSTTSC----HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHH-HCCCHHHHHHHhCCCCC----HHHHHHHHHHHHHHhCCCHHHHH
Confidence 3455 678888888999998887644222 1111 24788999988764422 35677788888877653211100
Q ss_pred ccccc--chHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCCCCCCCCC
Q 001890 200 MSMDF--DKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGPDPTMDT 277 (1000)
Q Consensus 200 is~q~--D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~~~~~e~ 277 (1000)
.+ ..+||.++.-+..+
T Consensus 168 ---~~~~~g~i~~Lv~lL~~~----------------------------------------------------------- 185 (530)
T 1wa5_B 168 ---VVVDADAVPLFIQLLYTG----------------------------------------------------------- 185 (530)
T ss_dssp ---HHHHTTCHHHHHHHHHHC-----------------------------------------------------------
T ss_pred ---HHHHCCCHHHHHHHHcCC-----------------------------------------------------------
Confidence 00 12355554444321
Q ss_pred CCChHHHHHHHHHHHHHhhhhcc---hHHHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhc-CCCcc----hHHH
Q 001890 278 SKSPSYWSRVCLDNMARLAKETT---TVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEES-GENSH----LLLC 349 (1000)
Q Consensus 278 ~e~p~vlA~~CLr~l~~~A~e~t---tvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~-~Q~~~----lvLs 349 (1000)
..+....|..||.+|+.-..+.. --..++.+++..+.+.+ ..+...+...+..+.... ..... -++.
T Consensus 186 ~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-----~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 260 (530)
T 1wa5_B 186 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-----PSLIRTATWTLSNLCRGKKPQPDWSVVSQALP 260 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-----HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH
T ss_pred CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC-----HHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHH
Confidence 01234456677777764311110 11246677777776521 223223333333333222 22222 2455
Q ss_pred HHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHH
Q 001890 350 NLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLE 429 (1000)
Q Consensus 350 ~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~ 429 (1000)
.|++.|.+. ++.++...+.++..|+........ .+++ .+++..|...+... +...+....
T Consensus 261 ~L~~lL~~~----d~~v~~~a~~~L~~L~~~~~~~~~-~~~~--~~~v~~Lv~lL~~~-------------~~~v~~~a~ 320 (530)
T 1wa5_B 261 TLAKLIYSM----DTETLVDACWAISYLSDGPQEAIQ-AVID--VRIPKRLVELLSHE-------------STLVQTPAL 320 (530)
T ss_dssp HHHHHTTCC----CHHHHHHHHHHHHHHHSSCHHHHH-HHHH--TTCHHHHHHGGGCS-------------CHHHHHHHH
T ss_pred HHHHHHcCC----CHHHHHHHHHHHHHHhCCCHHHHH-HHHh--cCcHHHHHHHHCCC-------------ChhhHHHHH
Confidence 666666552 577888888888777653211100 0111 13444444444321 356677777
Q ss_pred HHHHHhhcccCCCch-HH--HHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhcCCC
Q 001890 430 NCISWLSKKVGDVGP-IL--DVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPD 506 (1000)
Q Consensus 430 ~CIg~LA~hV~da~q-I~--DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am~~pD 506 (1000)
.+|+.++.+-++..+ +. ..+..++.-+... -......+++..+++.+.-+. .....+-..++..|+..+-+++
T Consensus 321 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~~ 396 (530)
T 1wa5_B 321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITAGNTE--QIQAVIDANLIPPLVKLLEVAE 396 (530)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHH--HHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHhcCC
Confidence 889998865322111 11 1233333334432 122233344444444321110 0000011123444555556789
Q ss_pred chhhHHHHHHHHHhhcC
Q 001890 507 HETRVGAHTVLSVVLMP 523 (1000)
Q Consensus 507 ~e~Rl~a~~If~~lL~p 523 (1000)
+++|..|...+..+...
T Consensus 397 ~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 397 YKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999888653
No 24
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.41 E-value=47 Score=41.07 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=42.5
Q ss_pred eehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHhhhccccccc--cccchHH-H
Q 001890 133 QILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMS--MDFDKII-S 209 (1000)
Q Consensus 133 ~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~~~~e~shis--~q~D~IV-p 209 (1000)
+..+|..|..++....+ .+......|+..+.++....++.....+++.-++.-++.++........+. .-+..|+ +
T Consensus 263 k~~~~~~l~~l~~~~~~-~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~ 341 (960)
T 1wa5_C 263 KSSIQELVQLYTTRYED-VFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQ 341 (960)
T ss_dssp HHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHH
Confidence 34456677766643221 122222334444444333222212234778888888888775321111211 3477888 7
Q ss_pred HHHhhhc
Q 001890 210 VTLENFV 216 (1000)
Q Consensus 210 vILeNl~ 216 (1000)
+++-+|.
T Consensus 342 ~i~~~m~ 348 (960)
T 1wa5_C 342 IILPNVT 348 (960)
T ss_dssp THHHHHS
T ss_pred HhHHhcC
Confidence 8888885
No 25
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=86.26 E-value=27 Score=39.96 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=56.6
Q ss_pred eHHHHHHHHHHhcccc-cC-cchhhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhc
Q 001890 93 VVVCIYKKFLSSCKEQ-MP-LFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEM 170 (1000)
Q Consensus 93 V~l~i~~~Ll~~C~~~-l~-LFa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~ 170 (1000)
-++..+|+||..-+.. +. +.-..++..+-.+|..+.+++++..|+..+...+.+..+.+-.---.+.|+.|..+....
T Consensus 95 ~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~ 174 (529)
T 3tpo_A 95 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 174 (529)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC
Confidence 3567778887532211 11 112233444444565466788999999998888765433333333457899999987654
Q ss_pred CchHHHHHHHHHHHHHHHHhHh
Q 001890 171 GNDERALRLRSAGLQVLAYMVK 192 (1000)
Q Consensus 171 ~~de~~~rlR~AGLqAL~~vV~ 192 (1000)
.. .+|...+.||..++.
T Consensus 175 ~~-----~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 175 HA-----HISEQAVWALGNIAG 191 (529)
T ss_dssp CH-----HHHHHHHHHHHHHHT
T ss_pred CH-----HHHHHHHHHHHHHhc
Confidence 33 345566677776653
No 26
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=81.75 E-value=6.8 Score=41.05 Aligned_cols=113 Identities=12% Similarity=0.172 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHHHHhhcccC--CCc--hHHHHHHHHHhhcCCC-ccchhhhHH
Q 001890 394 NDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVG--DVG--PILDVMAGVLENMSNN-TVVARTTIS 468 (1000)
Q Consensus 394 sdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA~hV~--da~--qI~DMmavmLenis~~-~~~ar~tvs 468 (1000)
..+++.|++.+.... |...+.+--+||++||++++ ... -...++-.++++++.. +.+......
T Consensus 59 ~~~~~~L~~~l~~D~------------n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~ 126 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDA------------NIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRK 126 (249)
T ss_dssp HHHHHHHHHHHHHCS------------CHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC------------CHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 355667777764321 56677888999999999996 444 3456788889999853 222222111
Q ss_pred HHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcC
Q 001890 469 AVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVLMP 523 (1000)
Q Consensus 469 a~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am~~pD~e~Rl~a~~If~~lL~p 523 (1000)
+ +-.++..++.. .....++.++..|+.++-|+.+.+|..+...+..++..
T Consensus 127 a---l~~i~~~~~~~--~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 127 A---LLTICKYYDPL--ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp H---HHHHHHHSCTT--CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHcccc--ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 1 22333233211 11123678999999999999999999999999999876
No 27
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=79.80 E-value=72 Score=34.51 Aligned_cols=313 Identities=12% Similarity=0.100 Sum_probs=158.7
Q ss_pred CCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHhhhccccccccccchH
Q 001890 128 RQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKI 207 (1000)
Q Consensus 128 ~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~~~~e~shis~q~D~I 207 (1000)
.++.+ ..++..+...+..... ...+..+++.+.+.......+ ...|.+++++|..++.... .......++.+
T Consensus 102 ~~~~v-~~~~~~i~~ia~~~~~---~~~w~~ll~~L~~~l~~~~~~---~~~r~~al~~l~~l~~~~~-~~~~~~~~~~l 173 (462)
T 1ibr_B 102 ETYRP-SSASQCVAGIACAEIP---VNQWPELIPQLVANVTNPNST---EHMKESTLEAIGYICQDID-PEQLQDKSNEI 173 (462)
T ss_dssp CCSSS-CSHHHHHHHHHHHHGG---GTCCTTHHHHHHHHHHCTTCC---HHHHHHHHHHHHHHHHHSC-GGGTGGGHHHH
T ss_pred CCchh-hHHHHHHHHHHHHhcc---ccccHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHHHHhCC-chhhHhHHHHH
Confidence 44555 5566667666654211 135678999888888653202 2578899999999886531 11122334556
Q ss_pred HHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCCCCCCCCCCCChHHHHHH
Q 001890 208 ISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRV 287 (1000)
Q Consensus 208 VpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~~~~~e~~e~p~vlA~~ 287 (1000)
++.++.-+.+.. ...+.+..|..
T Consensus 174 l~~l~~~l~~~~---------------------------------------------------------~~~~vr~~a~~ 196 (462)
T 1ibr_B 174 LTAIIQGMRKEE---------------------------------------------------------PSNNVKLAATN 196 (462)
T ss_dssp HHHHHHHHSTTC---------------------------------------------------------CCHHHHHHHHH
T ss_pred HHHHHHHhCCCC---------------------------------------------------------CCHHHHHHHHH
Confidence 666665554210 00123344566
Q ss_pred HHHHHHHhhhhcc---hHHH-HhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhc-CCCcc-hHHHHHHHhhhccCCC
Q 001890 288 CLDNMARLAKETT---TVRR-VLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEES-GENSH-LLLCNLVKHLDHKSVA 361 (1000)
Q Consensus 288 CLr~l~~~A~e~t---tvr~-VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~-~Q~~~-lvLs~Lv~HLd~k~v~ 361 (1000)
||.+++....... ..+. ++..+.....+.. + .....|..+|..+....... ..+-- -++..++..+.+
T Consensus 197 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~-~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---- 270 (462)
T 1ibr_B 197 ALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-T-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS---- 270 (462)
T ss_dssp HHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS-H-HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----
Confidence 6666543221100 0112 3444443333211 1 11233444444443221100 11111 445555555544
Q ss_pred CCchhhhhHHHHHHHHHHhccc----------------ccchhHHH-HHHHHHHHHHHhhcccccCCCCCCccccchHHH
Q 001890 362 KQPLAQTNIVDIATKLAQNAKL----------------LASVAIIG-TINDLIKHLRKCLQNSVELSSSGDGMAKTNADL 424 (1000)
Q Consensus 362 ~~p~~q~~IV~Vlt~La~~~~~----------------~~svsvid-vlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~L 424 (1000)
.++.++...++.+..++..... ......+. .+..++..|-+.+....++ . + +.+-..
T Consensus 271 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d--~--~--~~~~~~ 344 (462)
T 1ibr_B 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN--D--D--DDDWNP 344 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSS--C--C--TTCCSH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccc--c--c--cccchH
Confidence 2578888888887777654200 01111111 2334444444444321111 0 0 112356
Q ss_pred HHHHHHHHHHhhcccCCCchHHH-HHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhc
Q 001890 425 QYSLENCISWLSKKVGDVGPILD-VMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMA 503 (1000)
Q Consensus 425 q~aL~~CIg~LA~hV~da~qI~D-MmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am~ 503 (1000)
+.+-..|++.|+.+.++ .+.. ++..+.+.+... --+...++++..+.+......-.+ +.+-+.++..|+..+-
T Consensus 345 r~~a~~~L~~l~~~~~~--~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~--~~~l~~~~~~l~~~l~ 418 (462)
T 1ibr_B 345 CKAAGVCLMLLATCCED--DIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQL--KPLVIQAMPTLIELMK 418 (462)
T ss_dssp HHHHHHHHHHHHHHTTT--THHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTT--CTTTTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhc
Confidence 77888999999999983 4443 445555555542 234455566655555532210001 1122456777888888
Q ss_pred CCCchhhHHHHHHHHHhhcC
Q 001890 504 HPDHETRVGAHTVLSVVLMP 523 (1000)
Q Consensus 504 ~pD~e~Rl~a~~If~~lL~p 523 (1000)
.+++.+|-.|...+..+..-
T Consensus 419 d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 419 DPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999988877643
No 28
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=79.30 E-value=1.1e+02 Score=36.12 Aligned_cols=292 Identities=11% Similarity=0.101 Sum_probs=149.7
Q ss_pred HHHHHHhhCCCChhhhHHHHHHHHHHHHhhhcCCceeeHHHHHHHHHHhcccccCcchhhHHHHHHHHHhccCCcceeeh
Q 001890 56 KLCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTRQEEMQIL 135 (1000)
Q Consensus 56 KL~~Ya~s~P~KL~KIg~yLekR~~kDl~r~r~G~V~V~l~i~~~Ll~~C~~~l~LFa~s~L~Ii~~LL~qs~~~~l~i~ 135 (1000)
-|..|+...|.--+++-.+|.+-+.+ .-..+..+-.|..++.+.++.-... +-......+.+..+|. +.+++++..
T Consensus 257 ~L~~l~~~~~~~~~~~~~~L~~l~~~-~~~~~~~~~aV~~ea~~~i~~l~~~--~~l~~~a~~~L~~~L~-~~d~~vr~~ 332 (618)
T 1w63_A 257 LLRILGRNDDDSSEAMNDILAQVATN-TETSKNVGNAILYETVLTIMDIKSE--SGLRVLAINILGRFLL-NNDKNIRYV 332 (618)
T ss_dssp HHHHHTTTCHHHHHTTHHHHHHHHHT-SCCSSTHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHT-CSSTTTHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHh-CCCCchHHH
Confidence 34456655665455566666654432 1112223445777777776653221 1122235566777788 678899999
Q ss_pred hHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHhhhccccccccccchHHHHHHhhh
Q 001890 136 GCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENF 215 (1000)
Q Consensus 136 a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~~~~e~shis~q~D~IVpvILeNl 215 (1000)
|..++..++... ......|. ..+.. |.. .+| ..+|...|..|..++.. .+++.||.-++.-+
T Consensus 333 aL~~L~~i~~~~--p~~~~~~~---~~i~~-~l~-d~d---~~Ir~~alelL~~l~~~--------~nv~~iv~eL~~~l 394 (618)
T 1w63_A 333 ALTSLLKTVQTD--HNAVQRHR---STIVD-CLK-DLD---VSIKRRAMELSFALVNG--------NNIRGMMKELLYFL 394 (618)
T ss_dssp HHHHHHHHHHHH--HHHHGGGH---HHHHH-GGG-SSC---HHHHHHHHHHHHHHCCS--------SSTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--HHHHHHHH---HHHHH-Hcc-CCC---hhHHHHHHHHHHHHccc--------ccHHHHHHHHHHHH
Confidence 999888887542 22222221 11111 111 122 35677778877777642 23677777666554
Q ss_pred ccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHh
Q 001890 216 VDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGPDPTMDTSKSPSYWSRVCLDNMARL 295 (1000)
Q Consensus 216 ~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~~~~~e~~e~p~vlA~~CLr~l~~~ 295 (1000)
... | ......+++.|...
T Consensus 395 ~~~-----d---------------------------------------------------------~e~r~~~v~~I~~l 412 (618)
T 1w63_A 395 DSC-----E---------------------------------------------------------PEFKADCASGIFLA 412 (618)
T ss_dssp HHC-----C---------------------------------------------------------HHHHHHHHHHHHHH
T ss_pred HhC-----C---------------------------------------------------------HHHHHHHHHHHHHH
Confidence 421 0 01233444444444
Q ss_pred hhhc-chHHHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhccCCCCCchhhhhHHHHH
Q 001890 296 AKET-TTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIA 374 (1000)
Q Consensus 296 A~e~-ttvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~~~lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vl 374 (1000)
|..+ +....+++.++..+...+.+... . ++.+++.+. .+.++-+-.++..+++.|+... ..++..+ .++.++
T Consensus 413 a~k~~~~~~~~v~~ll~lL~~~~~~v~~-~-~~~~l~~ii---~~~p~l~~~~v~~L~~~l~~~~-~~~~~~~-~~~wil 485 (618)
T 1w63_A 413 AEKYAPSKRWHIDTIMRVLTTAGSYVRD-D-AVPNLIQLI---TNSVEMHAYTVQRLYKAILGDY-SQQPLVQ-VAAWCI 485 (618)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTGGGSCS-S-HHHHHHHHH---HHSCSTHHHHHHHHHHHHHHCC-SCSHHHH-HHHHHH
T ss_pred HHHhCccHHHHHHHHHHHHHhccchhHH-H-HHHHHHHHH---hcChhHHHHHHHHHHHHHhccc-ccHHHHH-HHHHHH
Confidence 4432 44666777777776655544442 2 334444433 2223334457778888887622 2345444 456666
Q ss_pred HHHHHhcccc------c-chhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHHHHhhcccCCCchHHH
Q 001890 375 TKLAQNAKLL------A-SVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGDVGPILD 447 (1000)
Q Consensus 375 t~La~~~~~~------~-svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA~hV~da~qI~D 447 (1000)
........++ | ++. - +.+++.|+..+.... .+...+..+..+++.|+.+.+.. .+
T Consensus 486 GEy~~~i~~~~~~~~~~~~~~-~---~~~~~~l~~~l~~~~-----------~~~~vr~~~lta~~Kl~~~~~~~---~~ 547 (618)
T 1w63_A 486 GEYGDLLVSGQCEEEEPIQVT-E---DEVLDILESVLISNM-----------STSVTRGYALTAIMKLSTRFTCT---VN 547 (618)
T ss_dssp HHHHHHHTTCCCSSSCCCCCC-H---HHHHHHHHHHHHSTT-----------CCHHHHHHHHHHHHHHHTTCSSC---HH
T ss_pred hhhHHHhcccccccccccCCC-H---HHHHHHHHHHHhccC-----------CCHHHHHHHHHHHHHHHHhCcch---HH
Confidence 5544321110 0 010 0 122333333332211 03556778889999999888743 34
Q ss_pred HHHHHHhhc
Q 001890 448 VMAGVLENM 456 (1000)
Q Consensus 448 MmavmLeni 456 (1000)
++..+|+..
T Consensus 548 ~l~~~L~~~ 556 (618)
T 1w63_A 548 RIKKVVSIY 556 (618)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444433
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=78.53 E-value=41 Score=37.51 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhH
Q 001890 114 SSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMV 191 (1000)
Q Consensus 114 ~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV 191 (1000)
...+..+-.+|. +.+++++..++.++...+....+....-.-.+.|+.+.++..... .+.|.....+|..+.
T Consensus 100 ~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-----~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 100 SGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-----VKFLAITTDCLQILA 171 (529)
T ss_dssp TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-----HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC-----HHHHHHHHHHHHHHH
Confidence 345555666677 677888888888888877654433221222567888888876432 244556666666444
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=78.40 E-value=65 Score=37.72 Aligned_cols=317 Identities=9% Similarity=0.043 Sum_probs=151.3
Q ss_pred chhhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhH
Q 001890 112 FASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMV 191 (1000)
Q Consensus 112 Fa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV 191 (1000)
++...+..+-.+|. +.++..+..|+..+...+.......-.....+.|+.+.++-....+ ...|..++++|..+.
T Consensus 11 ~~~g~i~~Lv~lL~-~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~----~~~~~~A~~~L~~Ls 85 (644)
T 2z6h_A 11 LATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND----VETARCTAGTLHNLS 85 (644)
T ss_dssp -CTTTHHHHHHHHT-CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHT
T ss_pred hhhchHHHHHHHHc-CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCC----HHHHHHHHHHHHHHh
Confidence 45555666777888 7888999999999988886543222223334677777777654322 234556677776543
Q ss_pred hhhccccccccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCCC
Q 001890 192 KFMGEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGP 271 (1000)
Q Consensus 192 ~~~~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~ 271 (1000)
........+. + ..+||.++.-+..+
T Consensus 86 ~~~~~~~~i~-~-~g~i~~Lv~lL~~~----------------------------------------------------- 110 (644)
T 2z6h_A 86 HHREGLLAIF-K-SGGIPALVKMLGSP----------------------------------------------------- 110 (644)
T ss_dssp TSHHHHHHHH-T-TTHHHHHHHHTTCS-----------------------------------------------------
T ss_pred cChhhHHHHH-H-cCCHHHHHHHHhCC-----------------------------------------------------
Confidence 2210000000 0 02344444333311
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhhhcc-hH--HHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhcCCCcc---
Q 001890 272 DPTMDTSKSPSYWSRVCLDNMARLAKETT-TV--RRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSH--- 345 (1000)
Q Consensus 272 ~~~~e~~e~p~vlA~~CLr~l~~~A~e~t-tv--r~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~~~--- 345 (1000)
..+....|-.+|++|+....... .+ ..++..++..+.+++ |.- ...|..++..+.. ....++.
T Consensus 111 ------~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~~-~~~a~~~L~~La~---~~~~~~~~i~ 179 (644)
T 2z6h_A 111 ------VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKF-LAITTDCLQILAY---GNQESKLIIL 179 (644)
T ss_dssp ------SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-HHH-HHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC-HHH-HHHHHHHHHHHHh---cCcHHHHHHH
Confidence 01344567788888875422111 12 246777778887653 211 2233334443331 1111111
Q ss_pred --hHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHH
Q 001890 346 --LLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNAD 423 (1000)
Q Consensus 346 --lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~ 423 (1000)
=.+..|++.|.... ....+...+.++..|+....+...+ ++ .+.+..|.+.+... ...
T Consensus 180 ~~g~v~~Lv~lL~~~~---~~~~~~~a~~~L~nLs~~~~~~~~l--~~--~g~l~~L~~ll~~~-------------~~~ 239 (644)
T 2z6h_A 180 ASGGPQALVNIMRTYT---YEKLLWTTSRVLKVLSVCSSNKPAI--VE--AGGMQALGLHLTDP-------------SQR 239 (644)
T ss_dssp HTTHHHHHHHHHTTCC---CHHHHHHHHHHHHHHTTCTTHHHHH--HH--TTHHHHHHTTTTCS-------------CHH
T ss_pred HcCChHHHHHHHHcCC---hHHHHHHHHHHHHHHhcCcccHHHH--HH--CCCHHHHHHHHhcC-------------CHH
Confidence 23566777775532 2334444444444444322211111 11 12233333333211 245
Q ss_pred HHHHHHHHHHHhhcccCCCchHHHHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhc
Q 001890 424 LQYSLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMA 503 (1000)
Q Consensus 424 Lq~aL~~CIg~LA~hV~da~qI~DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am~ 503 (1000)
++.....+++.|+.+-+....+...+..++.-+.....-.| ..+....+++...-+. ......-.-.+..|+..+.
T Consensus 240 ~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~--~~a~~aL~~L~~~~~~--~~~~v~~~g~v~~Lv~lL~ 315 (644)
T 2z6h_A 240 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVV--TCAAGILSNLTCNNYK--NKMMVCQVGGIEALVRTVL 315 (644)
T ss_dssp HHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHH--HHHHHHHHHHHTTCHH--HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHH--HHHHHHHHHHHcCCHH--HHHHHHHcCCHHHHHHHHH
Confidence 66777788888887766555555666666666654321111 1122222222210000 0000000112334444444
Q ss_pred C-CC-chhhHHHHHHHHHhhcC
Q 001890 504 H-PD-HETRVGAHTVLSVVLMP 523 (1000)
Q Consensus 504 ~-pD-~e~Rl~a~~If~~lL~p 523 (1000)
+ ++ +++|..|...+..|-..
T Consensus 316 ~~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 316 RAGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSS
T ss_pred ccCCcHHHHHHHHHHHHHHhcC
Confidence 4 33 68999999999988543
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=76.76 E-value=49 Score=37.79 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=56.0
Q ss_pred eHHHHHHHHHHhcccccC---cchhhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHh
Q 001890 93 VVVCIYKKFLSSCKEQMP---LFASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQE 169 (1000)
Q Consensus 93 V~l~i~~~Ll~~C~~~l~---LFa~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~ 169 (1000)
-+++.+|+||..- ++-| +.-...+..+-.+|..+.++++|..|+..+...+....+..-.---.+.|+.|.++-..
T Consensus 76 ~a~~~~rklls~e-~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s 154 (510)
T 3ul1_B 76 QATQAARKLLSRE-KQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS 154 (510)
T ss_dssp HHHHHHHHHHTCS-SCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC-CCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 4666778887532 1211 11122344444567656678899999999988775433222211224689999998864
Q ss_pred cCchHHHHHHHHHHHHHHHHhHh
Q 001890 170 MGNDERALRLRSAGLQVLAYMVK 192 (1000)
Q Consensus 170 ~~~de~~~rlR~AGLqAL~~vV~ 192 (1000)
... .+|..++.||..+..
T Consensus 155 ~~~-----~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 155 PHA-----HISEQAVWALGNIAG 172 (510)
T ss_dssp SCH-----HHHHHHHHHHHHHHT
T ss_pred CCH-----HHHHHHHHHHHHHHh
Confidence 332 456667778777663
No 32
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=75.61 E-value=28 Score=36.40 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=82.1
Q ss_pred ChHH--HHHHHHHHHHHhhhhc--------chHHHHhhhhhhh-ccCCCCCCCCcchHHHHHHHHHHHHhhcCCCcchHH
Q 001890 280 SPSY--WSRVCLDNMARLAKET--------TTVRRVLEPLFQI-FDAENHWSTETGVACSVLLYLQSLLEESGENSHLLL 348 (1000)
Q Consensus 280 ~p~v--lA~~CLr~l~~~A~e~--------ttvr~VLepvf~~-lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~~~lvL 348 (1000)
|+.+ .|..||..++..+... +.+..++..++.. +.+.+ .+.--..+..++.+++... ....++
T Consensus 68 N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k-----~~~~~~a~~~l~~~~~~~~-~~~~~~ 141 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSR-----ATTKTQSMSCILSLCGLDT-SITQSV 141 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCC-----HHHHHHHHHHHHHHHHTSS-SSHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCcc-----HHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 4544 3678898887543211 1234455556654 44433 2222223333344444333 446778
Q ss_pred HHHHHhhhccCCCCCchhhhhHHHHHHHHHHh-cccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHH
Q 001890 349 CNLVKHLDHKSVAKQPLAQTNIVDIATKLAQN-AKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYS 427 (1000)
Q Consensus 349 s~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~-~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~a 427 (1000)
..++.-|.+|| |.++...+.++..++.. +.....+ -..+..+++.+.+++..+ +...+++
T Consensus 142 e~l~~~l~~Kn----pkv~~~~l~~l~~~l~~fg~~~~~~--k~~l~~i~~~l~k~l~d~-------------~~~VR~a 202 (278)
T 4ffb_C 142 ELVIPFFEKKL----PKLIAAAANCVYELMAAFGLTNVNV--QTFLPELLKHVPQLAGHG-------------DRNVRSQ 202 (278)
T ss_dssp HHHGGGGGCSC----HHHHHHHHHHHHHHHHHHTTTTCCH--HHHHHHHGGGHHHHHTCS-------------SHHHHHH
T ss_pred HHHHHHHhccC----HHHHHHHHHHHHHHHHHhCCCcCCc--hhHHHHHHHHHHHHHhCC-------------cHHHHHH
Confidence 88888888875 89999999999977653 2222222 345566777888877542 5778888
Q ss_pred HHHHHHHhhcccCC
Q 001890 428 LENCISWLSKKVGD 441 (1000)
Q Consensus 428 L~~CIg~LA~hV~d 441 (1000)
-.+|++.+-.++|+
T Consensus 203 A~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 203 TMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999888874
No 33
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=74.32 E-value=1.1e+02 Score=35.61 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHhh
Q 001890 115 SLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKF 193 (1000)
Q Consensus 115 s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~~ 193 (1000)
..+..+-.+|..+.+++.+..++..+..++........+.. .+.|+.+.++.+... ..+|..++.+|..+...
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~-----~~v~~~A~~aL~nL~~~ 128 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLH 128 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHT-TTHHHHHHHHTTCSS-----HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHH-cCCHHHHHHHHhCCC-----HHHHHHHHHHHHHHHhC
Confidence 34444445555345788888898888877653221122222 278899998886432 35777888888888764
No 34
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=74.29 E-value=26 Score=34.60 Aligned_cols=214 Identities=13% Similarity=0.101 Sum_probs=107.3
Q ss_pred ChHHHHHHHHHHHHHhhhh-cchH--HHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhcCCCcc-----hHHHHH
Q 001890 280 SPSYWSRVCLDNMARLAKE-TTTV--RRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSH-----LLLCNL 351 (1000)
Q Consensus 280 ~p~vlA~~CLr~l~~~A~e-~ttv--r~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~~~-----lvLs~L 351 (1000)
+....|-.+|.++.....+ ...+ ..++.+++..+.+.+ ...-..+...+..+......++- -++..+
T Consensus 17 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l 91 (252)
T 4hxt_A 17 ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-----SEVQKEAARALANIASGPDEAIKAIVDAGGVEVL 91 (252)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-----HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHH
Confidence 3455677777777643221 1111 136777788887654 22223333333333221111111 256777
Q ss_pred HHhhhccCCCCCchhhhhHHHHHHHHHHh-cccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHH
Q 001890 352 VKHLDHKSVAKQPLAQTNIVDIATKLAQN-AKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLEN 430 (1000)
Q Consensus 352 v~HLd~k~v~~~p~~q~~IV~Vlt~La~~-~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~ 430 (1000)
++.|.+. ++.++...+.++..++.. ......+ ++ .+.+..|.+.+... +..++.....
T Consensus 92 ~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~--~~--~~~i~~L~~~l~~~-------------~~~~~~~a~~ 150 (252)
T 4hxt_A 92 VKLLTST----DSEVQKEAARALANIASGPDEAIKAI--VD--AGGVEVLVKLLTST-------------DSEVQKEAAR 150 (252)
T ss_dssp HHHTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHH--HH--TTHHHHHHHHTTCS-------------CHHHHHHHHH
T ss_pred HHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHH--HH--CCCHHHHHHHHcCC-------------CHHHHHHHHH
Confidence 7777753 578888888888777632 1111111 11 12344444444321 3567788888
Q ss_pred HHHHhhcccCCCch-HH--HHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhcCCCc
Q 001890 431 CISWLSKKVGDVGP-IL--DVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDH 507 (1000)
Q Consensus 431 CIg~LA~hV~da~q-I~--DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am~~pD~ 507 (1000)
||+.|+.+-++..+ +. ..+..++.-+.... ...+..+.+-..++...-++ ......-...+..|+..+-++|+
T Consensus 151 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~--~~~~l~~~~~i~~L~~ll~~~~~ 226 (252)
T 4hxt_A 151 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPTS--AIKAIVDAGGVEVLQKLLTSTDS 226 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSBHH--HHHHHHHTTHHHHHHHGGGCSCH
T ss_pred HHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCC--HHHHHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHCCCcH
Confidence 89988875322211 11 12333333334321 12223333333344321110 00011112345667788889999
Q ss_pred hhhHHHHHHHHHhhcC
Q 001890 508 ETRVGAHTVLSVVLMP 523 (1000)
Q Consensus 508 e~Rl~a~~If~~lL~p 523 (1000)
++|..|..++..|...
T Consensus 227 ~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 227 EVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999765
No 35
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=74.15 E-value=32 Score=34.43 Aligned_cols=211 Identities=13% Similarity=0.098 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHHHHHhhhhcc-h--HHHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhhcCCCcc-----hHHHH
Q 001890 279 KSPSYWSRVCLDNMARLAKETT-T--VRRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEESGENSH-----LLLCN 350 (1000)
Q Consensus 279 e~p~vlA~~CLr~l~~~A~e~t-t--vr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~~~Q~~~-----lvLs~ 350 (1000)
.+....|-.||++++....+.. . -..++..++..+.+.+ ...-..+...+..+......++- -.+..
T Consensus 26 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 100 (252)
T 4db8_A 26 MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-----EQILQEALWALSNIASGGNEQIQAVIDAGALPA 100 (252)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 3567788999988876422111 1 1235677778887655 12222333333333221111111 25677
Q ss_pred HHHhhhccCCCCCchhhhhHHHHHHHHHHhcccc-cchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHH
Q 001890 351 LVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLL-ASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLE 429 (1000)
Q Consensus 351 Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~-~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~ 429 (1000)
+++.|.+. ++.++...+.++..|+...... ..+. -.+.+..|.+.++.. +...+....
T Consensus 101 L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~L~~lL~~~-------------~~~v~~~a~ 159 (252)
T 4db8_A 101 LVQLLSSP----NEQILQEALWALSNIASGGNEQIQAVI----DAGALPALVQLLSSP-------------NEQILQEAL 159 (252)
T ss_dssp HHHGGGCS----CHHHHHHHHHHHHHHTTSCHHHHHHHH----HTTHHHHHHHGGGCS-------------CHHHHHHHH
T ss_pred HHHHHcCC----CHHHHHHHHHHHHHhhcCCchHHHHHH----HCCCHHHHHHHHhCC-------------CHHHHHHHH
Confidence 88888773 4777877777777776533322 1111 113444555555321 356677788
Q ss_pred HHHHHhhcccCCCchH---HHHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccC-cHHHHHHHHHHhcCC
Q 001890 430 NCISWLSKKVGDVGPI---LDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAF-PEALFHQLLLAMAHP 505 (1000)
Q Consensus 430 ~CIg~LA~hV~da~qI---~DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaF-P~all~qLL~am~~p 505 (1000)
.||+.|+.+-+...+. ...+..+++-+.... ......++...+++...-++ ..+.+ -...+..|+..+-++
T Consensus 160 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~---~~~~~~~~g~i~~L~~ll~~~ 234 (252)
T 4db8_A 160 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNE---QKQAVKEAGALEKLEQLQSHE 234 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSS--HHHHHHHHHHHHHHTTSCHH---HHHHHHHTTHHHHHHTTTTCS
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHhcCCHH---HHHHHHHCCcHHHHHHHhCCC
Confidence 8888887643211111 011222333333211 11222333333333311110 00111 122556677788899
Q ss_pred CchhhHHHHHHHHHh
Q 001890 506 DHETRVGAHTVLSVV 520 (1000)
Q Consensus 506 D~e~Rl~a~~If~~l 520 (1000)
|+++|..|..++..|
T Consensus 235 ~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 235 NEKIQKEAQEALEKL 249 (252)
T ss_dssp SSHHHHTHHHHHHTT
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888765
No 36
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=73.55 E-value=1.6e+02 Score=35.97 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=75.1
Q ss_pred hhHHHHHHhhCCCChhhhHHHHHHHHHHHHhhhcCCcee-eHHHHHHHHHHhcccccCcchhhHHHHHHHHHhccC-Ccc
Q 001890 54 IGKLCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSVK-VVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTR-QEE 131 (1000)
Q Consensus 54 lsKL~~Ya~s~P~KL~KIg~yLekR~~kDl~r~r~G~V~-V~l~i~~~Ll~~C~~~l~LFa~s~L~Ii~~LL~qs~-~~~ 131 (1000)
+|.++.|...+|.=++.+=.+|-+.+. + ..|+ -+..++.+|...|++++.-|.+.++..+..++.... +.+
T Consensus 513 l~~~~~~l~~~~~~l~~vl~~l~~~l~-~------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~ 585 (963)
T 2x19_B 513 IGALSEWLADHPVMINSVLPLVLHALG-N------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTS 585 (963)
T ss_dssp HHHTHHHHHHCHHHHTTTHHHHHHHTT-C------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhC-C------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChH
Confidence 355555555666556666666655441 1 1232 355678899999999887778888888888887211 223
Q ss_pred eeehhHhHHHHHHhcCCchhhHHhhhhHHHHHH----HHhHhcCchHHHHHHHHHHHHHHHHhHhhhc
Q 001890 132 MQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLC----QLAQEMGNDERALRLRSAGLQVLAYMVKFMG 195 (1000)
Q Consensus 132 l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~----~ma~~~~~de~~~rlR~AGLqAL~~vV~~~~ 195 (1000)
.+....+++...+..........-++.+++.+. +.+... .++.....+..-|.+|.++++..+
T Consensus 586 ~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-~~~~~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 586 QCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI-PNPSNKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC-SCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444555544443321233333444444333 333222 233334556677888888887654
No 37
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=72.45 E-value=36 Score=33.58 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=76.5
Q ss_pred HHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHh-cccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHH
Q 001890 347 LLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQN-AKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQ 425 (1000)
Q Consensus 347 vLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~-~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq 425 (1000)
++..|++.|.+. ++.++...+.++..++.. ......+.--++ +..|.+.+... +...+
T Consensus 45 ~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~l~~ll~~~-------------~~~v~ 103 (252)
T 4hxt_A 45 GVEVLVKLLTST----DSEVQKEAARALANIASGPDEAIKAIVDAGG----VEVLVKLLTST-------------DSEVQ 103 (252)
T ss_dssp HHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH----HHHHHHHTTCS-------------SHHHH
T ss_pred CHHHHHHHHhCC----CHHHHHHHHHHHHHHHcCChHHHHHHHHCCC----HHHHHHHHcCC-------------CHHHH
Confidence 567777777663 477777777777666643 221111111123 33333333311 35677
Q ss_pred HHHHHHHHHhhcccCCCchHH---HHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHh
Q 001890 426 YSLENCISWLSKKVGDVGPIL---DVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAM 502 (1000)
Q Consensus 426 ~aL~~CIg~LA~hV~da~qI~---DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am 502 (1000)
.....+|+.|+.+-++..+.. ..+..++.-+.... ......+..-.+++...-++. .....-...+..|+..+
T Consensus 104 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~L~~ll 179 (252)
T 4hxt_A 104 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPDEA--IKAIVDAGGVEVLVKLL 179 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHH--HHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCHHH--HHHHHHCcCHHHHHHHH
Confidence 778888888876433222111 12233333333321 112222333333333110000 00011122556677788
Q ss_pred cCCCchhhHHHHHHHHHhhc
Q 001890 503 AHPDHETRVGAHTVLSVVLM 522 (1000)
Q Consensus 503 ~~pD~e~Rl~a~~If~~lL~ 522 (1000)
-++|+++|..|...+..+..
T Consensus 180 ~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 180 TSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp TCSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999999875
No 38
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=71.36 E-value=70 Score=38.84 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHhh
Q 001890 115 SLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKF 193 (1000)
Q Consensus 115 s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~~ 193 (1000)
.++..+-.+|..+.+++.+..++.++...+.......-+.. .+.|+.++++..... ..+|..++.+|..+...
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~~~~-----~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLGSPV-----DSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHTTCSC-----HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHHHcCCC-----HHHHHHHHHHHHHHhCC
Confidence 34444444555344777888888888776543211122222 378888888886432 35777888888887754
No 39
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=71.06 E-value=1.3e+02 Score=33.39 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHhh
Q 001890 115 SLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKF 193 (1000)
Q Consensus 115 s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~~ 193 (1000)
..+..+-.+|..+.+++.+..++..+..++........+.. .+.|+.+.++..... ..+|..++.+|..+...
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~ 131 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLH 131 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHHTTCSC-----HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHH-cCCHHHHHHHHcCCC-----HHHHHHHHHHHHHHhcC
Confidence 34444445555345788888888888887653211122222 378889988876432 34677788888887764
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=70.17 E-value=1.5e+02 Score=33.69 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=40.3
Q ss_pred cCCcceeehhHhHHHHHHhcCCch--hhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHh
Q 001890 127 TRQEEMQILGCGTLVNFIDSQTDG--TYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVK 192 (1000)
Q Consensus 127 s~~~~l~i~a~~tf~~F~~~q~D~--~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~ 192 (1000)
|++++.+..|+..|-++...+.+. +.+-+ .++|+.|.++....... .++.....||..++.
T Consensus 87 s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~-~G~ip~Lv~lL~~~~~~----~~q~~Aa~aL~nia~ 149 (529)
T 3tpo_A 87 SNNLESQLQATQAARKLLSREKQPPIDNIIR-AGLIPKFVSFLGKTDCS----PIQFESAWALTNIAS 149 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHH-TTHHHHHHHHHTCTTCH----HHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCchHHHHHH-CCCHHHHHHHHcCCCCH----HHHHHHHHHHHHHHc
Confidence 678888888998888876655443 22222 47899999988644332 344556667777664
No 41
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=69.89 E-value=1.5e+02 Score=33.60 Aligned_cols=309 Identities=14% Similarity=0.146 Sum_probs=148.1
Q ss_pred HHHHHHHHhccCCcceeehhHhHHHHHHhcCCch--hhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHhhh
Q 001890 117 LGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDG--TYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVKFM 194 (1000)
Q Consensus 117 L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~--~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~~~ 194 (1000)
-.||+.| . |++++.+..|+..|-+......+. +-+-+ .+.||.|.++-...... .++.....||..++...
T Consensus 60 ~~~v~~l-~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii~-~G~ip~LV~lL~~~~~~----~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 60 EDIVKGI-N-SNNLESQLQATQAARKLLSREKQPPIDNIIR-AGLIPKFVSFLGKTDCS----PIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHH-T-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHH-TTHHHHHHHHTTCTTCH----HHHHHHHHHHHHHHTSC
T ss_pred HHHHHHh-c-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHH-CCCHHHHHHHHCCCCCH----HHHHHHHHHHHHHhcCC
Confidence 3445443 4 688999999999998877655443 22222 37899999987544332 34555666777766422
Q ss_pred ccccccccccchHHHHHHhhhccccCCCCCCccCccCCcchhhhhhhhcccccCCCCCCcccccccccccCCCCCCCCCC
Q 001890 195 GEQSHMSMDFDKIISVTLENFVDLQMKPANGKEGRQHSQSEDQWVQGLQNEEDNDSSFPDMSKKVSSLKDSMINPGPDPT 274 (1000)
Q Consensus 195 ~e~shis~q~D~IVpvILeNl~~~~~~~~d~~~~~~~~~~~~~~v~e~~~~E~~~~~~~~~~~r~ps~~~~~~~~~~~~~ 274 (1000)
.+....-.+ .-.||.++.-+..+
T Consensus 133 ~e~~~~vv~-~GaIp~Lv~lL~s~-------------------------------------------------------- 155 (510)
T 3ul1_B 133 SEQTKAVVD-GGAIPAFISLLASP-------------------------------------------------------- 155 (510)
T ss_dssp HHHHHHHHH-TTHHHHHHHHTTCS--------------------------------------------------------
T ss_pred HHHHHHHHH-CCCHHHHHHHHcCC--------------------------------------------------------
Confidence 111100000 01356655554421
Q ss_pred CCCCCChHHHHHHHHHHHHHhhhh-cchH--HHHhhhhhhhccCCCCCCCCcchHHHHHHHHHHHHhh-cCCCcch----
Q 001890 275 MDTSKSPSYWSRVCLDNMARLAKE-TTTV--RRVLEPLFQIFDAENHWSTETGVACSVLLYLQSLLEE-SGENSHL---- 346 (1000)
Q Consensus 275 ~e~~e~p~vlA~~CLr~l~~~A~e-~ttv--r~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~l~e~-~~Q~~~l---- 346 (1000)
..+....|-.||.+|+.-..+ ...+ ..++.+++..+...+.-....++...+...+..+... .......
T Consensus 156 ---~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~ 232 (510)
T 3ul1_B 156 ---HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 232 (510)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHh
Confidence 012344566677777642211 1111 1256777777765542111111211112122222211 1222222
Q ss_pred HHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHH
Q 001890 347 LLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQY 426 (1000)
Q Consensus 347 vLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~ 426 (1000)
++..|++.|.+. ++.++...+.++..|+......... + +-.+++..|...+... +...+.
T Consensus 233 ~lp~L~~LL~~~----~~~v~~~A~~aL~~L~~~~~~~~~~-i--~~~g~i~~Lv~lL~~~-------------~~~v~~ 292 (510)
T 3ul1_B 233 ILPTLVRLLHHN----DPEVLADSCWAISYLTDGPNERIEM-V--VKKGVVPQLVKLLGAT-------------ELPIVT 292 (510)
T ss_dssp HHHHHHHHTTCS----CHHHHHHHHHHHHHHTSSCHHHHHH-H--HTTTCHHHHHHHHTCS-------------CHHHHH
T ss_pred HHHHHHHHHhcC----CHHHHHHHHHHHHHHhhchhhhHHH-H--HhcccchhhhhhhcCC-------------Chhhhh
Confidence 445566666553 4677777777766665432221111 0 1112334444444321 355677
Q ss_pred HHHHHHHHhhcccCCCchHHHHHHHHHhhcCCCccchh--------hhHHHHHHHHHHHhhcCCcccccccC-cHHHHHH
Q 001890 427 SLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVAR--------TTISAVHRTAQIISTIPNISYRNKAF-PEALFHQ 497 (1000)
Q Consensus 427 aL~~CIg~LA~hV~da~qI~DMmavmLenis~~~~~ar--------~tvsa~y~ta~i~a~~pn~sy~~kaF-P~all~q 497 (1000)
....||+.++++-. .+.. .++ +-+-.+.... .+..+++..+++.+. ...+.+.+ -..++..
T Consensus 293 ~al~aL~nl~~~~~--~~~~----~i~-~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~---~~~~~~~v~~~g~i~~ 362 (510)
T 3ul1_B 293 PALRAIGNIVTGTD--EQTQ----KVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAG---RQDQIQQVVNHGLVPF 362 (510)
T ss_dssp HHHHHHHHHTTSCH--HHHH----HHH-HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhhcCCH--HHHH----HHh-hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC---cHHHHHHHHhcCCHHH
Confidence 77788888876421 1111 111 1122222111 223333433444321 11111222 2235556
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhhc
Q 001890 498 LLLAMAHPDHETRVGAHTVLSVVLM 522 (1000)
Q Consensus 498 LL~am~~pD~e~Rl~a~~If~~lL~ 522 (1000)
|+..+-.+|.++|.-|...+..+..
T Consensus 363 Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 363 LVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 7777788999999999888887754
No 42
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=65.93 E-value=2.4e+02 Score=34.22 Aligned_cols=74 Identities=7% Similarity=0.098 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCchhhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhH
Q 001890 113 ASSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDGTYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMV 191 (1000)
Q Consensus 113 a~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV 191 (1000)
+...+..+-.+|. +.++..+..|+.++..++....+..-.....++|+.+.++-....+ ...|..++++|..+.
T Consensus 148 ~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d----~~vr~~Aa~aL~~Ls 221 (780)
T 2z6g_A 148 ATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND----VETARCTSGTLHNLS 221 (780)
T ss_dssp HHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCC----HHHHHHHHHHHHHHh
Confidence 4556666666777 6788899999999888876432222223344678888877654332 245667777887744
No 43
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=65.61 E-value=17 Score=36.40 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhccCCcceeehhHhHHHHHHhcCCch-hhHHhhhhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHhHh
Q 001890 114 SSLLGIIRTLLEQTRQEEMQILGCGTLVNFIDSQTDG-TYMFNLEGLIPKLCQLAQEMGNDERALRLRSAGLQVLAYMVK 192 (1000)
Q Consensus 114 ~s~L~Ii~~LL~qs~~~~l~i~a~~tf~~F~~~q~D~-~y~~~ye~fV~~f~~ma~~~~~de~~~rlR~AGLqAL~~vV~ 192 (1000)
...+..+-.+|. +.+++++..++..+...+....+. ..+.. .+.|+.+.++-... + ..+|..++.+|..+..
T Consensus 53 ~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~--~---~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 53 AGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSP--N---EQILQEALWALSNIAS 125 (252)
T ss_dssp TTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCS--C---HHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCC--C---HHHHHHHHHHHHHhhc
Confidence 345566666777 667888888888887777532222 22211 35788888887652 2 3667778888877753
No 44
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=64.23 E-value=1.6e+02 Score=36.21 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=50.3
Q ss_pred CCcchHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccch
Q 001890 342 ENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTN 421 (1000)
Q Consensus 342 Q~~~lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~ 421 (1000)
++---++..+++.|+ |.++..-...+..+.+..+ -.+...+..|+.+|...++... ..
T Consensus 542 ~~l~~vl~~l~~~l~-------~~v~~~A~~al~~l~~~~~----~~l~p~~~~ll~~l~~~l~~~~-----------~~ 599 (971)
T 2x1g_F 542 AYIPPAINLLVRGLN-------SSMSAQATLGLKELCRDCQ----LQLKPYADPLLNACHASLNTGR-----------MK 599 (971)
T ss_dssp -CHHHHHHHHHHHHH-------SSCHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHSTT-----------SC
T ss_pred HHHHHHHHHHHHHhC-------hHHHHHHHHHHHHHHHHHH----HhccccHHHHHHHHHHHHcCCC-----------CC
Confidence 444456666777773 4456555555556665432 2235677888888888876421 14
Q ss_pred HHHHHHHHHHHHHhhcccC
Q 001890 422 ADLQYSLENCISWLSKKVG 440 (1000)
Q Consensus 422 ~~Lq~aL~~CIg~LA~hV~ 440 (1000)
...+..+.+|||.++..++
T Consensus 600 ~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 600 NSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHhCC
Confidence 6778899999999999886
No 45
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=57.99 E-value=31 Score=42.42 Aligned_cols=109 Identities=18% Similarity=0.288 Sum_probs=67.6
Q ss_pred hhhHHHHHHhhCCCChhhhHHHHHHHHHHHHhhhcCCce-eeHHHHHHHHHHhcccccCcchhhHHHHHHHHHhccC-Cc
Q 001890 53 KIGKLCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSV-KVVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQTR-QE 130 (1000)
Q Consensus 53 ~lsKL~~Ya~s~P~KL~KIg~yLekR~~kDl~r~r~G~V-~V~l~i~~~Ll~~C~~~l~LFa~s~L~Ii~~LL~qs~-~~ 130 (1000)
-+|.++.|...+|.-++.+=.+|-+.+ | ..| .-+..++..|.+.|+.++.-|...++..+..+++... +.
T Consensus 529 ~l~~~~~~l~~~~~~l~~vl~~l~~~l--~------~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~ 600 (971)
T 2x1g_F 529 TMGSYCNWLMENPAYIPPAINLLVRGL--N------SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKN 600 (971)
T ss_dssp HHHHTHHHHC----CHHHHHHHHHHHH--H------SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHh--C------hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCCh
Confidence 457777888889988999999998887 3 233 3456678899999999988888888888888888321 23
Q ss_pred ceeehhHhHHHHHHhcC--Cc-hhhHHhh-hhHHHHHHHHhHh
Q 001890 131 EMQILGCGTLVNFIDSQ--TD-GTYMFNL-EGLIPKLCQLAQE 169 (1000)
Q Consensus 131 ~l~i~a~~tf~~F~~~q--~D-~~y~~~y-e~fV~~f~~ma~~ 169 (1000)
+.+....+.+...+... ++ ..|...| ..++.++-+.+..
T Consensus 601 ~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 601 SDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555554432 22 2554443 4455555555443
No 46
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=49.16 E-value=72 Score=40.36 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=44.2
Q ss_pred CCCChHHHHHHHHHHHHHhhhhcchHHHHhhhhhhhccCCCCCCCCcchHHHHHHHHHH
Q 001890 277 TSKSPSYWSRVCLDNMARLAKETTTVRRVLEPLFQIFDAENHWSTETGVACSVLLYLQS 335 (1000)
Q Consensus 277 ~~e~p~vlA~~CLr~l~~~A~e~ttvr~VLepvf~~lD~~~~Wsp~~gfAi~vf~~iq~ 335 (1000)
+....+..|...+..|++... ...++.+|..++.++++.+.|.. +--|+.++..+..
T Consensus 107 k~~~v~~aa~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~kw~~-k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 107 KDKEIQSVASETLISIVNAVN-PVAIKALLPHLTNAIVETNKWQE-KIAILAAFSAMVD 163 (986)
T ss_dssp SSHHHHHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhccccchHH-HHHHHHHHHHHHH
Confidence 334677788888899987766 44469999999999999999998 6667777766654
No 47
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=45.71 E-value=4.9e+02 Score=31.62 Aligned_cols=108 Identities=7% Similarity=0.078 Sum_probs=62.9
Q ss_pred eHHHHHHHHHHhcccccCcchhhHHHHHHHHHhc-cCCcceeehhHhHHHHHHhcC-CchhhHHhhhhHHHHHHHHhHhc
Q 001890 93 VVVCIYKKFLSSCKEQMPLFASSLLGIIRTLLEQ-TRQEEMQILGCGTLVNFIDSQ-TDGTYMFNLEGLIPKLCQLAQEM 170 (1000)
Q Consensus 93 V~l~i~~~Ll~~C~~~l~LFa~s~L~Ii~~LL~q-s~~~~l~i~a~~tf~~F~~~q-~D~~y~~~ye~fV~~f~~ma~~~ 170 (1000)
.++-++..+.+.|.+...-+...++. .|++- ..++.++.-+|.++..|+..- .+.. .+..+++++.+.-++
T Consensus 468 aal~al~~i~~~~~~~~~~~l~~l~~---~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~---~l~~vl~~l~~~l~~- 540 (963)
T 2x19_B 468 ALLYGFQSIAETIDVNYSDVVPGLIG---LIPRISISNVQLADTVMFTIGALSEWLADHPV---MINSVLPLVLHALGN- 540 (963)
T ss_dssp HHHHHHHHHTTSCCSSCCSHHHHHHH---HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH---HHTTTHHHHHHHTTC-
T ss_pred HHHHHHHHHHhhcCchhhHHHHHHHH---HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHhCC-
Confidence 46777888888888765444444444 33331 135666777888888887642 2233 355666666654332
Q ss_pred CchHHHHHHHHHHHHHHHHhHhhhccccccccccchHHHHHHhhh
Q 001890 171 GNDERALRLRSAGLQVLAYMVKFMGEQSHMSMDFDKIISVTLENF 215 (1000)
Q Consensus 171 ~~de~~~rlR~AGLqAL~~vV~~~~e~shis~q~D~IVpvILeNl 215 (1000)
.++|.++..||..++.... .++...++.|+..++..+
T Consensus 541 ------~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l 577 (963)
T 2x19_B 541 ------PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVL 577 (963)
T ss_dssp ------GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHh
Confidence 3567778888888886543 334444555555444333
No 48
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=33.81 E-value=2.3e+02 Score=27.20 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=77.0
Q ss_pred cCCCcchHHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCcccc
Q 001890 340 SGENSHLLLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAK 419 (1000)
Q Consensus 340 ~~Q~~~lvLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~ 419 (1000)
+++........+++-|.+. ++.+|...+.++..++....... ..+++ .+.+..|.+.+...
T Consensus 6 ~~~~~~~~~~~l~~LL~s~----~~~v~~~a~~~L~~l~~~~~~~~-~~i~~--~g~i~~L~~lL~~~------------ 66 (210)
T 4db6_A 6 HHHHHGSELPQMVQQLNSP----DQQELQSALRKLSQIASGGNEQI-QAVID--AGALPALVQLLSSP------------ 66 (210)
T ss_dssp -------CHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHH-HHHHH--TTHHHHHHHHTTCS------------
T ss_pred ccccccchhHHHHHHhcCC----CHHHHHHHHHHHHHHHcCCHHHH-HHHHH--cCCHHHHHHHHcCC------------
Confidence 4555555566666666653 57888887777777764321111 11111 12334444444321
Q ss_pred chHHHHHHHHHHHHHhhcccCCC-chHHH--HHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHH
Q 001890 420 TNADLQYSLENCISWLSKKVGDV-GPILD--VMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFH 496 (1000)
Q Consensus 420 ~~~~Lq~aL~~CIg~LA~hV~da-~qI~D--MmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~ 496 (1000)
+...+.....+|+.++.+-.+. +.+.+ .+..++.-+.... .+....+++-..++...-++ ......-...+.
T Consensus 67 -~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~ 141 (210)
T 4db6_A 67 -NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNE--QIQAVIDAGALP 141 (210)
T ss_dssp -CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHH--HHHHHHHTTHHH
T ss_pred -CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCc--HHHHHHHHHHHHHHHcCCHH--HHHHHHHcCcHH
Confidence 3456777778888887543221 11111 2233333334321 12222333333333311100 000011123566
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHhhcC
Q 001890 497 QLLLAMAHPDHETRVGAHTVLSVVLMP 523 (1000)
Q Consensus 497 qLL~am~~pD~e~Rl~a~~If~~lL~p 523 (1000)
.|+..+-++|+++|..|...+..+...
T Consensus 142 ~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 142 ALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 788888899999999999999998754
No 49
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=26.67 E-value=2e+02 Score=32.01 Aligned_cols=128 Identities=15% Similarity=0.119 Sum_probs=54.1
Q ss_pred CchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHHHHHHHHHHhhcccCC-
Q 001890 363 QPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQYSLENCISWLSKKVGD- 441 (1000)
Q Consensus 363 ~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~aL~~CIg~LA~hV~d- 441 (1000)
+|.++.+-+.++..+.++++ .+++-|+.+|.+. .. . ..-.|-.+++.++.++.. |
T Consensus 189 n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~--------~l---~---~~~~q~~llr~l~~~~~~--d~ 244 (355)
T 3tjz_B 189 NIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRH--------GL---K---SPFAYCMMIRVASRQLED--ED 244 (355)
T ss_dssp SHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSS--------CC---S---CHHHHHHHHHHHTCC-------
T ss_pred CccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcC--------CC---c---ChHHHHHHHHHHHHhccc--cc
Confidence 46666666666655555331 1455666666542 00 0 122233355555444332 2
Q ss_pred CchHHHHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhcCCCchhhHHHHHHHHHhh
Q 001890 442 VGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPDHETRVGAHTVLSVVL 521 (1000)
Q Consensus 442 a~qI~DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am~~pD~e~Rl~a~~If~~lL 521 (1000)
.+.-.+|+..+...+++ .--+-+|-++..+..+++.+-...+-.-.. |-+....+|+++|..|.+.+..+.
T Consensus 245 ~~~~~~~~~~l~~~L~~------~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~---L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 245 GSRDSPLFDFIESCLRN------KHEMVVYEAASAIVNLPGCSAKELAPAVSV---LQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp ------------CCCCC------SSHHHHHHHHHHHTC-----------CCCT---HHHHHHSSSSSSHHHHHHCC----
T ss_pred hhhHHHHHHHHHHHHcC------CChHHHHHHHHHHHhccCCCHHHHHHHHHH---HHHHHcCCCchHHHHHHHHHHHHH
Confidence 12234455555444443 235678899998877776321111111111 334455799999999999988887
Q ss_pred cC
Q 001890 522 MP 523 (1000)
Q Consensus 522 ~p 523 (1000)
..
T Consensus 316 ~~ 317 (355)
T 3tjz_B 316 MK 317 (355)
T ss_dssp --
T ss_pred HH
Confidence 54
No 50
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=22.61 E-value=29 Score=31.19 Aligned_cols=29 Identities=34% Similarity=0.637 Sum_probs=25.1
Q ss_pred hhhhccccCCCCCCCCChhhhhHHHHHHh
Q 001890 34 KKMLADIFPRNQDAEPNDRKIGKLCEYAS 62 (1000)
Q Consensus 34 kkLV~~iyP~~p~~~Pn~~~lsKL~~Ya~ 62 (1000)
+|||..|||.......++..|..|+.||.
T Consensus 20 ~Klv~aI~P~pdp~a~~d~rm~~l~~yAr 48 (81)
T 1kdx_A 20 HKLVQAIFPTPDPAALKDRRMENLVAYAK 48 (81)
T ss_dssp HHHHHHHSCCSSGGGGGSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChhhhhhHHHHHHHHHHH
Confidence 47999999997666778899999999985
No 51
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=21.85 E-value=55 Score=31.91 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=58.5
Q ss_pred hhhhhhhhccccCCCCCCCCChhhhhHHHHHHhhCCCChhhhHHHHHHHHHHHHhhhcCCceeeHHHHHHHHHHhcccc-
Q 001890 30 VKRYKKMLADIFPRNQDAEPNDRKIGKLCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCKEQ- 108 (1000)
Q Consensus 30 vkRykkLV~~iyP~~p~~~Pn~~~lsKL~~Ya~s~P~KL~KIg~yLekR~~kDl~r~r~G~V~V~l~i~~~Ll~~C~~~- 108 (1000)
+..|..-+.+.= -+....|..|+-+|..|...-+.|..-+++++.+---.++. -+|-.++..+..|+.+
T Consensus 9 ~~~f~~~L~~L~------~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL----~~LYL~DsIvkN~g~~y 78 (144)
T 1sz9_A 9 VKDFNSILEELT------FNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKL----YAFYALDSICKNVGSPY 78 (144)
T ss_dssp HHHHHHHHTTCS------SCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHHTCTTH
T ss_pred HHHHHHHHHHhc------cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHH----HHHHHHHHHHHhccchH
Confidence 345555555441 14667899999999999999999999999998763333333 3455667777778755
Q ss_pred cCcchhhHHHHHHHHHh
Q 001890 109 MPLFASSLLGIIRTLLE 125 (1000)
Q Consensus 109 l~LFa~s~L~Ii~~LL~ 125 (1000)
..+|+..+..+......
T Consensus 79 ~~~F~~~l~~~f~~~~~ 95 (144)
T 1sz9_A 79 TIYFSRNLFNLYKRTYL 95 (144)
T ss_dssp HHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666666666655554
No 52
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.64 E-value=6.3e+02 Score=25.41 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=68.1
Q ss_pred HHHHHHHhhhccCCCCCchhhhhHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCCCCccccchHHHHH
Q 001890 347 LLCNLVKHLDHKSVAKQPLAQTNIVDIATKLAQNAKLLASVAIIGTINDLIKHLRKCLQNSVELSSSGDGMAKTNADLQY 426 (1000)
Q Consensus 347 vLs~Lv~HLd~k~v~~~p~~q~~IV~Vlt~La~~~~~~~svsvidvlsdLlrHLRkslq~s~~~s~~g~~~~~~~~~Lq~ 426 (1000)
.+..|++.|.+. ++.+|...+..+..+. +. +++..|++.| +.. +...+.
T Consensus 24 ~i~~L~~~L~~~----~~~vr~~A~~~L~~~~-------~~---~~~~~L~~~l----~d~-------------~~~vR~ 72 (280)
T 1oyz_A 24 NDDELFRLLDDH----NSLKRISSARVLQLRG-------GQ---DAVRLAIEFC----SDK-------------NYIRRD 72 (280)
T ss_dssp CHHHHHHHTTCS----SHHHHHHHHHHHHHHC-------CH---HHHHHHHHHH----TCS-------------SHHHHH
T ss_pred hHHHHHHHHHcC----CHHHHHHHHHHHHccC-------Cc---hHHHHHHHHH----cCC-------------CHHHHH
Confidence 467788888763 4777776655553332 11 2333333333 211 345667
Q ss_pred HHHHHHHHhhcccCCCchHHHHHHHHHhhcCCCccchhhhHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhcCCC
Q 001890 427 SLENCISWLSKKVGDVGPILDVMAGVLENMSNNTVVARTTISAVHRTAQIISTIPNISYRNKAFPEALFHQLLLAMAHPD 506 (1000)
Q Consensus 427 aL~~CIg~LA~hV~da~qI~DMmavmLenis~~~~~ar~tvsa~y~ta~i~a~~pn~sy~~kaFP~all~qLL~am~~pD 506 (1000)
....+++.++..-....++..++.-.+.+ ...+.+ | ..++...+++-... ..+.+.+...|+..+-++|
T Consensus 73 ~A~~aL~~l~~~~~~~~~l~~~L~~~~~~-d~~~~v-r--~~a~~aL~~l~~~~-------~~~~~~~~~~L~~~l~d~~ 141 (280)
T 1oyz_A 73 IGAFILGQIKICKKCEDNVFNILNNMALN-DKSACV-R--ATAIESTAQRCKKN-------PIYSPKIVEQSQITAFDKS 141 (280)
T ss_dssp HHHHHHHHSCCCTTTHHHHHHHHHHHHHH-CSCHHH-H--HHHHHHHHHHHHHC-------GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHhc-CCCHHH-H--HHHHHHHHHHhccC-------CcccHHHHHHHHHHhhCCC
Confidence 77788888864322222222222211111 111111 2 22222223332111 1233456677778889999
Q ss_pred chhhHHHHHHHHHhhcC
Q 001890 507 HETRVGAHTVLSVVLMP 523 (1000)
Q Consensus 507 ~e~Rl~a~~If~~lL~p 523 (1000)
+.+|..|...+..+-++
T Consensus 142 ~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 142 TNVRRATAFAISVINDK 158 (280)
T ss_dssp HHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhcCCH
Confidence 99999999888776443
No 53
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=20.83 E-value=1.4e+02 Score=28.07 Aligned_cols=72 Identities=11% Similarity=0.188 Sum_probs=53.0
Q ss_pred ChhhhhHHHHHHhhCCCChhhhHHHHHHHHHHHHhhhcCCceeeHHHHHHHHHHhcccc-cCcchhhHHHHHHHHHh
Q 001890 50 NDRKIGKLCEYASKNPLRIPKITTLLEQRCYKDLRNENFGSVKVVVCIYKKFLSSCKEQ-MPLFASSLLGIIRTLLE 125 (1000)
Q Consensus 50 n~~~lsKL~~Ya~s~P~KL~KIg~yLekR~~kDl~r~r~G~V~V~l~i~~~Ll~~C~~~-l~LFa~s~L~Ii~~LL~ 125 (1000)
....|..+.-||..|...-+.|...+++++.+.--.+|.+ .|-.++.++..|+.. -+.|...|-.++-.++.
T Consensus 20 s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~----~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~ 92 (132)
T 4flb_A 20 TMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLN----LFYLANDVIQNCKRKNAIIFRESFADVLPEAAA 92 (132)
T ss_dssp SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHH----HHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHH----HHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence 4566999999999999999999999999987655444433 245667788888654 55677776666666655
No 54
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=20.64 E-value=2.5e+02 Score=31.19 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhH
Q 001890 178 RLRSAGLQVLAYMV 191 (1000)
Q Consensus 178 rlR~AGLqAL~~vV 191 (1000)
-+|..+|++|..+.
T Consensus 119 ~iR~lALRtL~~I~ 132 (355)
T 3tjz_B 119 SYRGPAVRALCQIT 132 (355)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhcCC
Confidence 46778888887775
Done!