Query 001893
Match_columns 999
No_of_seqs 463 out of 1915
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 11:45:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1244 Predicted transcriptio 99.1 1.8E-11 3.8E-16 130.6 1.2 93 603-752 223-330 (336)
2 PRK10314 putative acyltransfer 99.1 6E-10 1.3E-14 111.8 9.9 116 809-936 16-135 (153)
3 COG1246 ArgA N-acetylglutamate 99.0 3.5E-10 7.7E-15 113.7 7.8 83 854-938 43-126 (153)
4 PF00583 Acetyltransf_1: Acety 99.0 2.5E-09 5.3E-14 93.8 9.8 75 856-931 1-83 (83)
5 PF13508 Acetyltransf_7: Acety 99.0 3.5E-09 7.5E-14 93.7 10.6 76 852-932 4-79 (79)
6 KOG1512 PHD Zn-finger protein 98.9 2.7E-10 5.8E-15 122.3 1.1 92 602-751 256-361 (381)
7 PF13673 Acetyltransf_10: Acet 98.9 8.8E-09 1.9E-13 95.8 10.2 74 851-930 44-117 (117)
8 KOG0956 PHD finger protein AF1 98.8 1.9E-09 4.1E-14 126.2 4.5 150 602-759 3-186 (900)
9 PTZ00330 acetyltransferase; Pr 98.8 2.5E-08 5.3E-13 96.7 10.1 85 852-937 53-143 (147)
10 PLN02706 glucosamine 6-phospha 98.8 3.6E-08 7.7E-13 96.6 10.3 82 852-934 54-143 (150)
11 PRK10146 aminoalkylphosphonic 98.8 2.8E-08 6E-13 96.0 9.1 82 853-935 49-138 (144)
12 PRK07757 acetyltransferase; Pr 98.7 8.1E-08 1.8E-12 94.3 10.1 82 854-938 44-125 (152)
13 cd02169 Citrate_lyase_ligase C 98.7 6.5E-08 1.4E-12 107.5 9.5 75 854-934 9-83 (297)
14 PRK07922 N-acetylglutamate syn 98.6 1E-07 2.2E-12 97.1 9.7 81 854-937 48-129 (169)
15 PRK03624 putative acetyltransf 98.6 8.6E-08 1.9E-12 90.8 8.3 84 852-937 46-132 (140)
16 PLN02825 amino-acid N-acetyltr 98.6 9E-08 1.9E-12 113.3 10.3 88 853-942 409-497 (515)
17 PF13527 Acetyltransf_9: Acety 98.6 1.9E-07 4.2E-12 88.6 10.6 110 811-933 11-127 (127)
18 KOG4323 Polycomb-like PHD Zn-f 98.6 2.3E-08 5.1E-13 115.2 4.5 203 604-821 83-300 (464)
19 TIGR00124 cit_ly_ligase [citra 98.6 1.1E-07 2.5E-12 107.2 9.6 85 847-937 27-111 (332)
20 TIGR01575 rimI ribosomal-prote 98.5 3.8E-07 8.2E-12 85.6 9.8 82 852-935 32-116 (131)
21 PRK10975 TDP-fucosamine acetyl 98.5 4E-07 8.6E-12 94.0 10.1 87 848-935 99-188 (194)
22 TIGR02382 wecD_rffC TDP-D-fuco 98.5 4E-07 8.6E-12 94.0 9.9 81 854-935 102-185 (191)
23 TIGR01890 N-Ac-Glu-synth amino 98.5 3.4E-07 7.3E-12 106.4 10.4 85 854-940 325-410 (429)
24 TIGR03827 GNAT_ablB putative b 98.5 4.5E-07 9.7E-12 98.7 10.7 86 850-936 157-246 (266)
25 PRK05279 N-acetylglutamate syn 98.5 4.8E-07 1E-11 105.3 10.5 83 854-938 337-420 (441)
26 PRK09491 rimI ribosomal-protei 98.5 8.4E-07 1.8E-11 86.7 10.6 85 849-935 38-125 (146)
27 COG2153 ElaA Predicted acyltra 98.5 3.8E-07 8.3E-12 91.0 7.9 85 853-938 51-139 (155)
28 KOG4299 PHD Zn-finger protein 98.5 7.8E-08 1.7E-12 113.1 3.5 46 604-649 253-305 (613)
29 PRK12308 bifunctional arginino 98.5 4.9E-07 1.1E-11 109.5 10.4 82 854-938 506-587 (614)
30 KOG4299 PHD Zn-finger protein 98.4 1.3E-07 2.9E-12 111.2 4.6 49 694-751 255-303 (613)
31 PF15446 zf-PHD-like: PHD/FYVE 98.4 1.4E-07 3E-12 95.8 3.6 124 606-732 1-143 (175)
32 COG5141 PHD zinc finger-contai 98.4 7.8E-08 1.7E-12 109.6 1.9 124 600-737 189-342 (669)
33 KOG0825 PHD Zn-finger protein 98.4 1.2E-07 2.7E-12 112.5 2.9 135 603-753 122-266 (1134)
34 PRK10140 putative acetyltransf 98.4 1.6E-06 3.5E-11 85.1 10.3 85 851-937 51-143 (162)
35 PRK13688 hypothetical protein; 98.4 1.4E-06 3E-11 88.6 9.6 90 854-952 48-147 (156)
36 PRK09831 putative acyltransfer 98.4 1.1E-06 2.4E-11 86.6 8.7 73 854-937 56-128 (147)
37 KOG3139 N-acetyltransferase [G 98.4 1.9E-06 4.2E-11 87.4 10.3 94 853-949 58-158 (165)
38 KOG3396 Glucosamine-phosphate 98.3 1.7E-06 3.7E-11 85.5 8.5 86 851-937 53-146 (150)
39 KOG4443 Putative transcription 98.3 2.2E-07 4.8E-12 109.6 2.2 90 602-747 16-113 (694)
40 COG0456 RimI Acetyltransferase 98.3 2.6E-06 5.6E-11 85.0 9.4 76 861-937 72-156 (177)
41 KOG1512 PHD Zn-finger protein 98.3 1.8E-07 3.8E-12 101.1 0.3 101 522-647 256-361 (381)
42 KOG1244 Predicted transcriptio 98.3 2.4E-07 5.1E-12 99.7 1.2 85 543-650 243-332 (336)
43 TIGR03448 mycothiol_MshD mycot 98.3 5E-06 1.1E-10 90.5 11.1 84 850-936 45-129 (292)
44 PF13420 Acetyltransf_4: Acety 98.2 7.6E-06 1.6E-10 80.2 10.7 89 854-944 54-148 (155)
45 TIGR02406 ectoine_EctA L-2,4-d 98.2 4.6E-06 1E-10 83.8 9.2 83 852-935 40-128 (157)
46 KOG0955 PHD finger protein BR1 98.2 7.5E-07 1.6E-11 111.5 4.0 122 599-733 214-365 (1051)
47 PHA00673 acetyltransferase dom 98.2 7.6E-06 1.7E-10 83.3 10.0 84 851-935 55-146 (154)
48 PHA01807 hypothetical protein 98.1 6.2E-06 1.3E-10 83.7 8.2 82 852-936 54-142 (153)
49 TIGR03448 mycothiol_MshD mycot 98.1 8E-06 1.7E-10 88.9 9.6 76 859-935 208-288 (292)
50 TIGR03103 trio_acet_GNAT GNAT- 98.1 8.2E-06 1.8E-10 97.9 10.4 86 849-935 121-217 (547)
51 PF13523 Acetyltransf_8: Acety 98.0 2.7E-05 5.8E-10 76.7 10.0 89 849-938 46-144 (152)
52 PF08445 FR47: FR47-like prote 98.0 2.7E-05 5.9E-10 71.4 9.0 75 859-935 6-82 (86)
53 cd04301 NAT_SF N-Acyltransfera 98.0 2.4E-05 5.3E-10 62.6 7.6 61 854-914 2-64 (65)
54 KOG0383 Predicted helicase [Ge 98.0 2.7E-06 5.9E-11 103.1 2.9 155 621-817 1-162 (696)
55 PRK01346 hypothetical protein; 98.0 2.1E-05 4.6E-10 90.4 10.0 86 853-941 49-142 (411)
56 KOG0954 PHD finger protein [Ge 98.0 2.5E-06 5.4E-11 101.6 1.8 142 601-754 268-440 (893)
57 PRK10514 putative acetyltransf 97.9 3.5E-05 7.6E-10 74.8 9.0 76 854-937 53-128 (145)
58 TIGR01686 FkbH FkbH-like domai 97.9 2.9E-05 6.2E-10 87.0 9.3 81 851-933 231-319 (320)
59 PRK10562 putative acetyltransf 97.9 4.8E-05 1E-09 74.5 8.8 77 853-936 50-126 (145)
60 PRK15130 spermidine N1-acetylt 97.9 7.5E-05 1.6E-09 76.0 10.3 81 853-935 59-145 (186)
61 TIGR03585 PseH pseudaminic aci 97.9 0.0001 2.2E-09 72.2 10.5 82 854-938 54-141 (156)
62 PF00628 PHD: PHD-finger; Int 97.8 3.8E-06 8.2E-11 69.4 -0.2 48 695-751 2-49 (51)
63 TIGR01211 ELP3 histone acetylt 97.8 6.3E-05 1.4E-09 89.8 9.6 80 858-938 421-519 (522)
64 PRK10809 ribosomal-protein-S5- 97.7 0.00011 2.5E-09 75.4 9.3 83 851-935 77-166 (194)
65 COG3393 Predicted acetyltransf 97.7 8.5E-05 1.8E-09 81.0 8.4 83 852-935 178-262 (268)
66 COG3153 Predicted acetyltransf 97.7 0.00015 3.2E-09 75.2 9.2 83 852-938 47-134 (171)
67 KOG0383 Predicted helicase [Ge 97.7 2.1E-05 4.5E-10 95.7 3.1 49 601-649 44-94 (696)
68 smart00249 PHD PHD zinc finger 97.7 3.4E-05 7.5E-10 61.0 3.3 44 695-747 2-45 (47)
69 PRK10151 ribosomal-protein-L7/ 97.7 0.00025 5.5E-09 71.8 10.3 82 854-937 70-157 (179)
70 KOG1473 Nucleosome remodeling 97.6 1.1E-05 2.3E-10 99.7 -0.2 133 601-758 341-484 (1414)
71 PF13302 Acetyltransf_3: Acety 97.6 0.0003 6.5E-09 67.4 9.6 79 851-931 56-142 (142)
72 COG1247 Sortase and related ac 97.6 0.00038 8.2E-09 72.1 10.3 99 849-948 50-156 (169)
73 PF00628 PHD: PHD-finger; Int 97.6 1.9E-05 4.1E-10 65.2 0.5 43 606-648 1-50 (51)
74 PF13718 GNAT_acetyltr_2: GNAT 97.5 0.00053 1.1E-08 72.5 10.5 85 850-935 26-176 (196)
75 smart00249 PHD PHD zinc finger 97.5 7.2E-05 1.6E-09 59.2 2.8 41 606-646 1-47 (47)
76 smart00258 SAND SAND domain. 97.4 8E-05 1.7E-09 67.0 2.7 62 528-590 5-68 (73)
77 KOG1973 Chromatin remodeling p 97.4 6.4E-05 1.4E-09 83.1 1.5 42 606-648 223-267 (274)
78 KOG3397 Acetyltransferases [Ge 97.3 0.00042 9E-09 71.4 6.5 86 852-939 56-145 (225)
79 KOG4443 Putative transcription 97.0 0.00017 3.7E-09 86.0 0.5 107 605-730 69-180 (694)
80 KOG3216 Diamine acetyltransfer 97.0 0.0077 1.7E-07 61.4 11.7 123 805-935 15-146 (163)
81 COG5034 TNG2 Chromatin remodel 97.0 0.00026 5.7E-09 76.4 1.5 45 603-648 220-269 (271)
82 KOG0825 PHD Zn-finger protein 97.0 0.00029 6.3E-09 84.8 1.8 47 602-648 213-265 (1134)
83 KOG1973 Chromatin remodeling p 97.0 0.00029 6.2E-09 78.0 1.4 37 709-752 228-267 (274)
84 PF01342 SAND: SAND domain; I 96.9 0.0001 2.3E-09 67.7 -1.9 63 527-590 12-77 (82)
85 COG1670 RimL Acetyltransferase 96.9 0.005 1.1E-07 60.9 9.6 93 849-942 64-165 (187)
86 COG5034 TNG2 Chromatin remodel 96.9 0.00042 9E-09 74.9 1.9 45 693-752 222-269 (271)
87 PF08444 Gly_acyl_tr_C: Aralky 96.7 0.0026 5.6E-08 59.5 5.5 75 855-934 3-79 (89)
88 COG3053 CitC Citrate lyase syn 96.7 0.0042 9.1E-08 68.8 7.8 111 852-978 37-155 (352)
89 PF12746 GNAT_acetyltran: GNAT 96.5 0.017 3.7E-07 64.0 10.8 84 849-935 164-247 (265)
90 PF12568 DUF3749: Acetyltransf 96.4 0.024 5.3E-07 56.4 10.0 79 854-935 41-125 (128)
91 KOG0957 PHD finger protein [Ge 96.4 0.0012 2.6E-08 76.6 1.1 47 693-750 545-595 (707)
92 KOG0957 PHD finger protein [Ge 96.3 0.0013 2.8E-08 76.4 0.7 125 603-732 118-276 (707)
93 KOG3235 Subunit of the major N 96.2 0.013 2.8E-07 60.1 7.1 84 853-936 43-136 (193)
94 COG0454 WecD Histone acetyltra 96.1 0.0083 1.8E-07 50.9 4.7 44 881-930 87-130 (156)
95 PF14542 Acetyltransf_CG: GCN5 96.1 0.034 7.4E-07 50.5 8.6 58 854-912 2-59 (78)
96 KOG2488 Acetyltransferase (GNA 96.0 0.016 3.5E-07 60.9 7.3 85 850-935 91-182 (202)
97 cd04718 BAH_plant_2 BAH, or Br 95.9 0.0036 7.8E-08 63.5 1.8 26 722-752 1-26 (148)
98 KOG3138 Predicted N-acetyltran 95.5 0.011 2.4E-07 62.3 3.7 60 875-935 89-152 (187)
99 KOG0955 PHD finger protein BR1 95.5 0.0077 1.7E-07 76.7 2.9 53 691-754 218-270 (1051)
100 COG1444 Predicted P-loop ATPas 95.5 0.016 3.5E-07 71.8 5.4 58 876-935 532-591 (758)
101 KOG0956 PHD finger protein AF1 95.4 0.0073 1.6E-07 72.6 2.0 51 691-752 4-56 (900)
102 COG2388 Predicted acetyltransf 95.3 0.041 8.8E-07 52.7 6.4 59 854-912 18-76 (99)
103 KOG1245 Chromatin remodeling c 95.3 0.0039 8.5E-08 81.8 -0.7 54 691-755 1107-1160(1404)
104 cd04718 BAH_plant_2 BAH, or Br 95.3 0.0088 1.9E-07 60.8 2.0 25 625-649 1-27 (148)
105 KOG4144 Arylalkylamine N-acety 95.3 0.013 2.9E-07 59.7 3.1 61 874-935 100-161 (190)
106 PF13831 PHD_2: PHD-finger; PD 95.1 0.0039 8.6E-08 49.0 -1.0 34 614-647 2-36 (36)
107 KOG3234 Acetyltransferase, (GN 94.8 0.059 1.3E-06 55.4 6.3 73 860-933 51-129 (173)
108 COG4552 Eis Predicted acetyltr 94.4 0.05 1.1E-06 62.0 5.0 86 845-935 35-127 (389)
109 TIGR03694 exosort_acyl putativ 94.0 0.45 9.7E-06 52.1 11.2 131 808-943 17-206 (241)
110 KOG1245 Chromatin remodeling c 93.6 0.018 4E-07 75.8 -0.4 49 601-649 1105-1158(1404)
111 PF13480 Acetyltransf_6: Acety 93.2 0.46 1E-05 45.3 8.8 66 851-917 71-136 (142)
112 KOG0954 PHD finger protein [Ge 93.0 0.041 8.9E-07 67.0 1.4 49 693-752 272-320 (893)
113 PF06852 DUF1248: Protein of u 92.9 0.5 1.1E-05 49.9 9.0 82 852-935 48-137 (181)
114 COG5141 PHD zinc finger-contai 92.8 0.044 9.5E-07 64.1 1.2 47 693-750 194-240 (669)
115 COG3981 Predicted acetyltransf 92.3 0.23 4.9E-06 51.8 5.5 70 851-922 70-144 (174)
116 smart00258 SAND SAND domain. 92.0 0.1 2.3E-06 47.3 2.4 49 261-311 20-69 (73)
117 PF00765 Autoind_synth: Autoin 91.6 1.2 2.6E-05 46.9 10.0 120 808-935 8-155 (182)
118 KOG4323 Polycomb-like PHD Zn-f 90.8 0.078 1.7E-06 62.5 0.3 44 606-649 170-224 (464)
119 COG1243 ELP3 Histone acetyltra 90.4 0.24 5.3E-06 58.3 3.9 51 884-935 459-509 (515)
120 PF13831 PHD_2: PHD-finger; PD 89.7 0.051 1.1E-06 42.8 -1.6 33 711-750 2-35 (36)
121 PRK13834 putative autoinducer 89.1 2.2 4.8E-05 45.8 9.6 123 807-936 15-168 (207)
122 COG5628 Predicted acetyltransf 87.7 2.2 4.7E-05 42.5 7.6 85 853-942 39-131 (143)
123 KOG2036 Predicted P-loop ATPas 86.8 0.54 1.2E-05 57.8 3.6 53 829-904 591-643 (1011)
124 cd04264 DUF619-NAGS DUF619 dom 84.8 1.9 4.1E-05 41.4 5.5 49 856-904 13-63 (99)
125 PF01342 SAND: SAND domain; I 84.3 0.16 3.5E-06 47.0 -1.8 55 255-311 18-78 (82)
126 COG3818 Predicted acetyltransf 83.6 3.2 6.9E-05 42.0 6.6 64 877-940 86-153 (167)
127 PF13832 zf-HC5HC2H_2: PHD-zin 80.3 1.2 2.5E-05 42.6 2.3 31 694-732 57-89 (110)
128 PF02474 NodA: Nodulation prot 78.7 2.9 6.4E-05 43.9 4.7 53 875-929 85-137 (196)
129 TIGR03019 pepcterm_femAB FemAB 77.3 5 0.00011 45.4 6.5 81 854-935 198-281 (330)
130 PF07897 DUF1675: Protein of u 75.1 4 8.8E-05 46.0 4.9 70 224-297 207-283 (284)
131 cd04265 DUF619-NAGS-U DUF619 d 74.1 5.8 0.00013 38.2 5.1 44 862-905 20-64 (99)
132 KOG2535 RNA polymerase II elon 73.9 4.7 0.0001 46.3 5.0 57 879-936 490-548 (554)
133 PF14446 Prok-RING_1: Prokaryo 69.9 3.1 6.6E-05 36.0 1.9 35 693-732 6-40 (54)
134 PF12861 zf-Apc11: Anaphase-pr 69.6 1.8 3.9E-05 40.6 0.5 49 603-651 20-82 (85)
135 PF07227 DUF1423: Protein of u 69.2 4.8 0.0001 47.7 4.0 56 695-754 131-193 (446)
136 PF01853 MOZ_SAS: MOZ/SAS fami 67.6 12 0.00026 40.0 6.1 84 808-908 26-113 (188)
137 KOG4135 Predicted phosphogluco 67.2 8.5 0.00018 39.8 4.7 59 875-934 107-169 (185)
138 KOG1473 Nucleosome remodeling 65.1 3.3 7.1E-05 53.4 1.6 44 694-751 346-389 (1414)
139 PF01233 NMT: Myristoyl-CoA:pr 63.6 66 0.0014 33.8 10.4 112 790-912 22-147 (162)
140 PLN03238 probable histone acet 63.5 13 0.00029 42.0 5.8 82 810-908 103-188 (290)
141 PF07897 DUF1675: Protein of u 63.3 4.9 0.00011 45.4 2.4 32 546-577 252-283 (284)
142 PRK14852 hypothetical protein; 63.2 21 0.00045 46.7 8.1 64 873-936 119-182 (989)
143 KOG1701 Focal adhesion adaptor 62.8 2.7 6E-05 49.3 0.4 34 694-729 396-429 (468)
144 PF13444 Acetyltransf_5: Acety 62.7 15 0.00033 34.6 5.3 52 846-897 26-100 (101)
145 PF04377 ATE_C: Arginine-tRNA- 62.4 33 0.0007 34.6 7.8 63 850-913 38-100 (128)
146 PF13880 Acetyltransf_13: ESCO 62.1 6.1 0.00013 35.9 2.4 27 878-904 8-34 (70)
147 PF14446 Prok-RING_1: Prokaryo 62.1 4.3 9.3E-05 35.1 1.3 28 604-631 5-36 (54)
148 PF13639 zf-RING_2: Ring finge 60.3 0.75 1.6E-05 37.0 -3.4 40 605-647 1-44 (44)
149 PF13771 zf-HC5HC2H: PHD-like 59.3 4.4 9.6E-05 37.1 1.0 31 694-732 38-70 (90)
150 PRK00756 acyltransferase NodA; 58.8 15 0.00032 38.7 4.7 60 875-935 85-146 (196)
151 PTZ00064 histone acetyltransfe 55.9 16 0.00035 44.1 5.0 83 809-908 331-417 (552)
152 COG3916 LasI N-acyl-L-homoseri 55.5 64 0.0014 35.2 9.0 83 849-932 51-160 (209)
153 PLN00104 MYST -like histone ac 54.8 12 0.00027 44.7 3.9 83 809-908 253-339 (450)
154 PF11793 FANCL_C: FANCL C-term 53.8 8.1 0.00018 34.7 1.8 47 604-650 2-65 (70)
155 KOG1081 Transcription factor N 53.7 8.6 0.00019 46.3 2.4 48 600-648 85-132 (463)
156 KOG4628 Predicted E3 ubiquitin 53.7 8.1 0.00018 44.8 2.1 42 605-649 230-276 (348)
157 PLN03239 histone acetyltransfe 53.4 23 0.00049 41.2 5.6 83 809-908 160-246 (351)
158 KOG2747 Histone acetyltransfer 53.2 12 0.00027 43.9 3.6 78 809-904 209-289 (396)
159 PF12678 zf-rbx1: RING-H2 zinc 52.5 2.8 6E-05 37.8 -1.4 43 603-647 18-73 (73)
160 PF12261 T_hemolysin: Thermost 51.8 29 0.00062 36.9 5.7 72 857-933 41-140 (179)
161 PF15446 zf-PHD-like: PHD/FYVE 51.0 8.3 0.00018 40.5 1.5 35 695-732 2-36 (175)
162 KOG1298 Squalene monooxygenase 50.1 8 0.00017 45.5 1.4 187 21-246 97-319 (509)
163 KOG1472 Histone acetyltransfer 50.0 5.3 0.00012 50.0 -0.0 119 844-964 411-533 (720)
164 PF04958 AstA: Arginine N-succ 49.5 23 0.0005 41.2 4.9 77 851-929 59-182 (342)
165 TIGR03244 arg_catab_AstA argin 46.0 36 0.00078 39.5 5.7 50 850-899 54-141 (336)
166 TIGR03245 arg_AOST_alph argini 45.7 34 0.00073 39.7 5.4 50 850-899 55-142 (336)
167 TIGR03243 arg_catab_AOST argin 45.2 35 0.00077 39.5 5.5 50 850-899 54-141 (335)
168 PRK10456 arginine succinyltran 44.2 35 0.00076 39.7 5.3 50 850-899 56-143 (344)
169 PHA02929 N1R/p28-like protein; 41.7 10 0.00022 41.9 0.5 47 602-650 172-226 (238)
170 cd00162 RING RING-finger (Real 39.5 11 0.00023 28.9 0.2 40 607-648 2-43 (45)
171 PF13832 zf-HC5HC2H_2: PHD-zin 36.5 18 0.00038 34.6 1.2 29 603-631 54-85 (110)
172 PRK01305 arginyl-tRNA-protein 35.9 1.7E+02 0.0037 32.6 8.8 59 854-913 147-205 (240)
173 PF13901 DUF4206: Domain of un 35.1 40 0.00086 36.2 3.7 37 290-326 100-137 (202)
174 PF11793 FANCL_C: FANCL C-term 34.9 20 0.00043 32.2 1.2 34 694-730 4-39 (70)
175 KOG2752 Uncharacterized conser 33.4 19 0.00042 41.1 1.1 109 606-731 57-167 (345)
176 PF13771 zf-HC5HC2H: PHD-like 32.5 21 0.00045 32.7 0.9 29 604-632 36-67 (90)
177 KOG0317 Predicted E3 ubiquitin 31.7 17 0.00037 41.0 0.3 49 601-653 236-286 (293)
178 KOG1246 DNA-binding protein ju 30.6 33 0.00072 44.6 2.7 46 604-649 155-204 (904)
179 KOG1734 Predicted RING-contain 29.9 15 0.00032 41.2 -0.6 48 601-649 221-279 (328)
180 smart00184 RING Ring finger. E 29.1 14 0.00031 27.1 -0.6 38 607-646 1-39 (39)
181 PF10080 DUF2318: Predicted me 29.0 74 0.0016 31.0 4.1 68 508-583 3-86 (102)
182 KOG1632 Uncharacterized PHD Zn 28.3 32 0.0007 40.0 1.8 44 712-759 74-119 (345)
183 TIGR02174 CXXU_selWTH selT/sel 27.7 41 0.00088 30.3 2.0 29 40-69 39-67 (72)
184 KOG0827 Predicted E3 ubiquitin 25.8 15 0.00032 43.1 -1.5 43 605-649 5-54 (465)
185 KOG0804 Cytoplasmic Zn-finger 25.6 28 0.00061 41.5 0.7 42 603-648 174-219 (493)
186 COG5574 PEX10 RING-finger-cont 25.1 20 0.00044 40.1 -0.5 50 602-652 213-263 (271)
187 PLN02400 cellulose synthase 24.9 62 0.0013 42.7 3.5 49 602-651 34-89 (1085)
188 KOG3612 PHD Zn-finger protein 24.2 55 0.0012 40.0 2.7 47 602-648 58-107 (588)
189 COG5027 SAS2 Histone acetyltra 24.1 33 0.00071 39.9 0.9 75 808-899 208-286 (395)
190 KOG1428 Inhibitor of type V ad 23.8 20 0.00043 47.8 -1.0 50 601-650 3483-3543(3738)
191 KOG2779 N-myristoyl transferas 23.6 4.1E+02 0.0088 31.5 9.2 125 791-926 80-224 (421)
192 PF10262 Rdx: Rdx family; Int 23.6 23 0.0005 32.0 -0.4 27 41-68 42-68 (76)
193 COG2401 ABC-type ATPase fused 23.5 53 0.0011 39.5 2.4 38 874-911 240-277 (593)
194 KOG1246 DNA-binding protein ju 23.1 57 0.0012 42.5 2.8 48 694-753 157-204 (904)
195 PF07649 C1_3: C1-like domain; 22.1 34 0.00073 25.7 0.3 28 695-728 3-30 (30)
196 PLN03208 E3 ubiquitin-protein 22.1 33 0.00072 36.9 0.4 50 602-651 16-79 (193)
197 KOG1493 Anaphase-promoting com 21.6 13 0.00029 34.4 -2.3 31 621-651 50-81 (84)
198 TIGR03827 GNAT_ablB putative b 20.9 1.4E+02 0.003 33.0 4.8 41 892-933 22-62 (266)
199 PF09924 DUF2156: Uncharacteri 20.4 5.3E+02 0.012 28.8 9.4 67 850-917 179-247 (299)
No 1
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.10 E-value=1.8e-11 Score=130.63 Aligned_cols=93 Identities=29% Similarity=0.845 Sum_probs=77.6
Q ss_pred cccccccccC----------CCCeecccCCCCcCCcccccC-----CCCCCCCccccCcccccchhhhccccccccccCc
Q 001893 603 NDDLCTICAD----------GGNLLPCDGCPRAFHKECASL-----SSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGR 667 (999)
Q Consensus 603 ndd~C~VC~d----------gG~Ll~CD~CprafH~~CL~l-----~~vP~G~W~Cp~C~~~~~~ek~v~~n~~a~a~Gr 667 (999)
...+|..|.. +.+|+.|..|+|+-|+.||.+ ..|....|+|..|+.
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~------------------- 283 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY------------------- 283 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce-------------------
Confidence 3456777763 346999999999999999964 356778999999984
Q ss_pred ccccCchhhhhhhhhhhhcccccccCccccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceec
Q 001893 668 VSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCC 747 (999)
Q Consensus 668 ~sGvds~eqi~kRc~R~vk~~~~e~~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~ 747 (999)
|.+|+-++ +++.+|+||.|++.||++||.| +|.+.|+|.|-|
T Consensus 284 ---------------------------csicgtse------nddqllfcddcdrgyhmyclsp----pm~eppegswsc- 325 (336)
T KOG1244|consen 284 ---------------------------CSICGTSE------NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC- 325 (336)
T ss_pred ---------------------------eccccCcC------CCceeEeecccCCceeeEecCC----CcCCCCCCchhH-
Confidence 99999765 6789999999999999999998 678899999999
Q ss_pred CCchh
Q 001893 748 MDCSR 752 (999)
Q Consensus 748 ~~C~~ 752 (999)
.-|-.
T Consensus 326 ~KOG~ 330 (336)
T KOG1244|consen 326 HLCLE 330 (336)
T ss_pred HHHHH
Confidence 66743
No 2
>PRK10314 putative acyltransferase; Provisional
Probab=99.06 E-value=6e-10 Score=111.85 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccc-cEEEEEEeCCeEEEEEEEEEecC--ceEEeeeeeeec
Q 001893 809 LLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGG-MYCAILTVNSSVVSAGILRVFGQ--EVAELPLVATSK 885 (999)
Q Consensus 809 ~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G-~y~~VL~~~~~vVgaA~lrv~g~--d~AEIp~VAT~~ 885 (999)
.+..|+.+=++-|-+= -+.+ |. ++.+.|..+ -+.+++..++++||++++...+. ..++|.+|||+|
T Consensus 16 ~~~~~~~lR~~VF~~e----q~~~------~~-e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~ 84 (153)
T PRK10314 16 QLYALLQLRCAVFVVE----QNCP------YQ-DIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSE 84 (153)
T ss_pred HHHHHHHHHHHHhhhh----cCCC------cc-ccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECH
Confidence 4567777777777321 1111 11 233334422 34466778999999999987543 358999999999
Q ss_pred CCcCCChhHHHHHHHHHHhhhc-CceEEEEcchhhhHHHHHhccCcEEcChh
Q 001893 886 INHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFKKIDPE 936 (999)
Q Consensus 886 ~~RgqG~gr~L~~~IE~~l~~l-gV~~LvLpA~~eA~~~w~~kfGF~~i~~~ 936 (999)
+|||+|+|++||+.+++.++.. +...++|.|...|++||++ |||..+++.
T Consensus 85 ~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k-~GF~~~g~~ 135 (153)
T PRK10314 85 ALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS-FGFIPVTEV 135 (153)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH-CCCEECCCc
Confidence 9999999999999999988775 7889999999999999999 999999873
No 3
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.05 E-value=3.5e-10 Score=113.66 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=75.5
Q ss_pred EEEEeCCeEEEEEEEE-EecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEE
Q 001893 854 AILTVNSSVVSAGILR-VFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 932 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lr-v~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 932 (999)
.|++.+|.+||||.++ +.+.+++||.-+||+|+|||+|+|..|++.|+..++.+|++++++.+. -.+-|..++||+.
T Consensus 43 ~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt--~~~~~F~~~GF~~ 120 (153)
T COG1246 43 TIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT--RSPEFFAERGFTR 120 (153)
T ss_pred eeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec--ccHHHHHHcCCeE
Confidence 5778899999999999 788999999999999999999999999999999999999999999884 2556666699999
Q ss_pred cChhcc
Q 001893 933 IDPELV 938 (999)
Q Consensus 933 i~~~e~ 938 (999)
++.+++
T Consensus 121 vd~~~L 126 (153)
T COG1246 121 VDKDEL 126 (153)
T ss_pred CccccC
Confidence 999766
No 4
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.99 E-value=2.5e-09 Score=93.79 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=68.9
Q ss_pred EEeCCeEEEEEEEEEecC-----ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhH---HHHHhc
Q 001893 856 LTVNSSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAE---SIWTDK 927 (999)
Q Consensus 856 L~~~~~vVgaA~lrv~g~-----d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~---~~w~~k 927 (999)
.+.+|+|||++.+++... ..+.|..++|+++|||+|+|+.|++.+++.++..|+..|.+.+.+++. .||++
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k- 79 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK- 79 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH-
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH-
Confidence 378999999999999886 499999999999999999999999999999999999999998886655 89998
Q ss_pred cCcE
Q 001893 928 FGFK 931 (999)
Q Consensus 928 fGF~ 931 (999)
+||+
T Consensus 80 ~Gf~ 83 (83)
T PF00583_consen 80 LGFE 83 (83)
T ss_dssp TTEE
T ss_pred cCCC
Confidence 9996
No 5
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.98 E-value=3.5e-09 Score=93.69 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=67.1
Q ss_pred EEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcE
Q 001893 852 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFK 931 (999)
Q Consensus 852 y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~ 931 (999)
+.++++.++++||++.+...+ +.+.|..++|+|+|||+|+|+.||+.+.+.+.. ..+++.+.+.+.+||++ +||+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~-~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~-~GF~ 78 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNE-DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEK-LGFE 78 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHH-TTEE
T ss_pred EEEEEEECCEEEEEEEEEEcC-CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHH-CcCC
Confidence 568889999999999997766 599999999999999999999999999888854 56788889999999999 9998
Q ss_pred E
Q 001893 932 K 932 (999)
Q Consensus 932 ~ 932 (999)
+
T Consensus 79 ~ 79 (79)
T PF13508_consen 79 E 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 6
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.92 E-value=2.7e-10 Score=122.29 Aligned_cols=92 Identities=28% Similarity=0.660 Sum_probs=76.2
Q ss_pred ccccccccccCCC---------CeecccCCCCcCCcccccCC-----CCCCCCccccCcccccchhhhccccccccccCc
Q 001893 602 DNDDLCTICADGG---------NLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANAVEAGR 667 (999)
Q Consensus 602 ~ndd~C~VC~dgG---------~Ll~CD~CprafH~~CL~l~-----~vP~G~W~Cp~C~~~~~~ek~v~~n~~a~a~Gr 667 (999)
.....|.+|.++. .+++|..|.-++|+.|+.+. .+....|.|..|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l------------------- 316 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL------------------- 316 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh-------------------
Confidence 3456799998653 39999999999999999743 34557899999972
Q ss_pred ccccCchhhhhhhhhhhhcccccccCccccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceec
Q 001893 668 VSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCC 747 (999)
Q Consensus 668 ~sGvds~eqi~kRc~R~vk~~~~e~~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~ 747 (999)
|.+|+++. -+..+++||.|++.||..|+ .|..+|.|.|.|-
T Consensus 317 ---------------------------C~IC~~P~------~E~E~~FCD~CDRG~HT~CV------GL~~lP~G~WICD 357 (381)
T KOG1512|consen 317 ---------------------------CRICLGPV------IESEHLFCDVCDRGPHTLCV------GLQDLPRGEWICD 357 (381)
T ss_pred ---------------------------hhccCCcc------cchheeccccccCCCCcccc------ccccccCccchhh
Confidence 99999875 56789999999999999999 6889999999995
Q ss_pred CCch
Q 001893 748 MDCS 751 (999)
Q Consensus 748 ~~C~ 751 (999)
..|.
T Consensus 358 ~~C~ 361 (381)
T KOG1512|consen 358 MRCR 361 (381)
T ss_pred hHHH
Confidence 5574
No 7
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.89 E-value=8.8e-09 Score=95.82 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=65.6
Q ss_pred cEEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCc
Q 001893 851 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 930 (999)
Q Consensus 851 ~y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF 930 (999)
...+|++.++++||++.++ .-++|..++|+|+|||+|+|++||+.+++.++. |++.|.+.+...|.+||++ +||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHH-TT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHh-CCC
Confidence 4568999999999999986 345699999999999999999999999999988 9999999999999999999 998
No 8
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.84 E-value=1.9e-09 Score=126.20 Aligned_cols=150 Identities=23% Similarity=0.583 Sum_probs=94.7
Q ss_pred ccccccccccCCC-----CeecccC--CCCcCCcccccCCCCCCCCccccCcccc-----c------chhhhccccccc-
Q 001893 602 DNDDLCTICADGG-----NLLPCDG--CPRAFHKECASLSSIPQGDWYCKYCQNM-----F------ERKRFLQHDANA- 662 (999)
Q Consensus 602 ~ndd~C~VC~dgG-----~Ll~CD~--CprafH~~CL~l~~vP~G~W~Cp~C~~~-----~------~~ek~v~~n~~a- 662 (999)
+..--|.||.|.. -|++||+ |.-+.|+.|+++.+||.|+|||+.|... + ++...+++.-+.
T Consensus 3 EMVGGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~G 82 (900)
T KOG0956|consen 3 EMVGGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGG 82 (900)
T ss_pred ccccceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCC
Confidence 4455699999753 3999998 9999999999999999999999999753 1 111122111110
Q ss_pred -------cc--cCcccccCchhhhhhhhhhhhcccccc--cCccccccCCCCCCCCCCCCceecCC--CCCCccCccccc
Q 001893 663 -------VE--AGRVSGVDSVEQITKRCIRIVKNLEAE--LSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLK 729 (999)
Q Consensus 663 -------~a--~Gr~sGvds~eqi~kRc~R~vk~~~~e--~~~C~vC~~~d~s~sg~~~~tLL~CD--qCdraYHv~CL~ 729 (999)
.. .-++-.+..+|.|. ++++..+ ...||||.+-+-.. ....+..|.|+ .|.++||+.|.+
T Consensus 83 WAHVVCALYIPEVrFgNV~TMEPIi------Lq~VP~dRfnKtCYIC~E~Grpn-kA~~GACMtCNKs~CkqaFHVTCAQ 155 (900)
T KOG0956|consen 83 WAHVVCALYIPEVRFGNVHTMEPII------LQDVPHDRFNKTCYICNEEGRPN-KAAKGACMTCNKSGCKQAFHVTCAQ 155 (900)
T ss_pred ceEEEEEeeccceeeccccccccee------eccCchhhhcceeeeecccCCcc-ccccccceecccccchhhhhhhHhh
Confidence 00 01222233333321 1222112 13499999765322 22456789998 799999999998
Q ss_pred cccCCcccC--CCCCcceecCCchhhHHHHHh
Q 001893 730 KHKMADLRE--LPKGKWFCCMDCSRINSVLQN 759 (999)
Q Consensus 730 p~~~~~Lke--lP~g~WfC~~~C~~I~~~Lq~ 759 (999)
..++..-++ +-+.--|| -.|+..+.+|.+
T Consensus 156 ~~GLLCEE~gn~~dNVKYC-GYCk~HfsKlkk 186 (900)
T KOG0956|consen 156 RAGLLCEEEGNISDNVKYC-GYCKYHFSKLKK 186 (900)
T ss_pred hhccceeccccccccceec-hhHHHHHHHhhc
Confidence 766432222 11233678 899999999886
No 9
>PTZ00330 acetyltransferase; Provisional
Probab=98.80 E-value=2.5e-08 Score=96.67 Aligned_cols=85 Identities=14% Similarity=0.219 Sum_probs=73.7
Q ss_pred EEEEEEeCCeEEEEEEEEEec------CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHH
Q 001893 852 YCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 925 (999)
Q Consensus 852 y~~VL~~~~~vVgaA~lrv~g------~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~ 925 (999)
+.++...++++||++.+.... ...++|..+.|+|+|||+|+|+.||..+++.++..|+..++|.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 345556789999999986532 23578899999999999999999999999999999999999999999999999
Q ss_pred hccCcEEcChhc
Q 001893 926 DKFGFKKIDPEL 937 (999)
Q Consensus 926 ~kfGF~~i~~~e 937 (999)
+ +||.......
T Consensus 133 k-~GF~~~~~~~ 143 (147)
T PTZ00330 133 K-LGFRACERQM 143 (147)
T ss_pred H-CCCEEeceEE
Confidence 8 9999988543
No 10
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.77 E-value=3.6e-08 Score=96.58 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=70.5
Q ss_pred EEEEEEe--CCeEEEEEEEEEec------CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHH
Q 001893 852 YCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI 923 (999)
Q Consensus 852 y~~VL~~--~~~vVgaA~lrv~g------~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~ 923 (999)
+.++++. ++++||++.+.+.. ..++.|..++|.|+|||+|+|+.|++.+++.++.+|+++|+|.+.+.+..+
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 4455555 68999999885432 356778889999999999999999999999999999999999999999999
Q ss_pred HHhccCcEEcC
Q 001893 924 WTDKFGFKKID 934 (999)
Q Consensus 924 w~~kfGF~~i~ 934 (999)
|++ +||+..+
T Consensus 134 y~k-~GF~~~g 143 (150)
T PLN02706 134 YEK-CGYVRKE 143 (150)
T ss_pred HHH-CcCEEeh
Confidence 998 9999875
No 11
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.76 E-value=2.8e-08 Score=95.98 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=70.8
Q ss_pred EEEEEeCCeEEEEEEEEEec-----CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch---hhhHHHH
Q 001893 853 CAILTVNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIW 924 (999)
Q Consensus 853 ~~VL~~~~~vVgaA~lrv~g-----~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w 924 (999)
.+|++.++++||++.+.... ...++|..++|+|+|||+|+|+.||+.+++.++..|+..+.|.+. ..|+.||
T Consensus 49 ~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY 128 (144)
T PRK10146 49 YHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFY 128 (144)
T ss_pred EEEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHH
Confidence 36678899999999987642 225789999999999999999999999999999999999999876 5889999
Q ss_pred HhccCcEEcCh
Q 001893 925 TDKFGFKKIDP 935 (999)
Q Consensus 925 ~~kfGF~~i~~ 935 (999)
++ +||.....
T Consensus 129 ~~-~Gf~~~~~ 138 (144)
T PRK10146 129 LR-EGYEQSHF 138 (144)
T ss_pred HH-cCCchhhh
Confidence 99 99977643
No 12
>PRK07757 acetyltransferase; Provisional
Probab=98.69 E-value=8.1e-08 Score=94.26 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=73.0
Q ss_pred EEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEEc
Q 001893 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 933 (999)
+++..++++||++.+.+.+.+.++|-.++|+|+|||+|+|+.|+..+++.+...|+.++.+-.. +..+|++ +||+.+
T Consensus 44 ~i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~k-~GF~~~ 120 (152)
T PRK07757 44 YVAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFEK-LGFREV 120 (152)
T ss_pred EEEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHH-CCCEEc
Confidence 4567889999999999988889999999999999999999999999999999999999876543 5789988 999999
Q ss_pred Chhcc
Q 001893 934 DPELV 938 (999)
Q Consensus 934 ~~~e~ 938 (999)
+...+
T Consensus 121 ~~~~~ 125 (152)
T PRK07757 121 DKEAL 125 (152)
T ss_pred ccccC
Confidence 87555
No 13
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.66 E-value=6.5e-08 Score=107.54 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=68.5
Q ss_pred EEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEEc
Q 001893 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 933 (999)
.|.+.++++||++.+.. .+|..|||+|+|||+|+|++||+.+++.++..|+.+++|.+...+.+||++ +||+.+
T Consensus 9 ~v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek-~GF~~~ 82 (297)
T cd02169 9 GIFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRG-LGFKEL 82 (297)
T ss_pred EEEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHH-CCCEEe
Confidence 44467799999998842 479999999999999999999999999999999999999999999999997 999999
Q ss_pred C
Q 001893 934 D 934 (999)
Q Consensus 934 ~ 934 (999)
+
T Consensus 83 ~ 83 (297)
T cd02169 83 A 83 (297)
T ss_pred c
Confidence 8
No 14
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.65 E-value=1e-07 Score=97.10 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=72.2
Q ss_pred EEEE-eCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEE
Q 001893 854 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 932 (999)
Q Consensus 854 ~VL~-~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 932 (999)
++++ .++++||.+.+.+...+.++|..++|+|+|||+|+|+.||+.+++.++..|++++.+... +..||++ +||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k-~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFAR-HGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHH-CCCEE
Confidence 5667 889999999988877788999999999999999999999999999999999999987654 4789999 99999
Q ss_pred cChhc
Q 001893 933 IDPEL 937 (999)
Q Consensus 933 i~~~e 937 (999)
++...
T Consensus 125 ~~~~~ 129 (169)
T PRK07922 125 IDGTP 129 (169)
T ss_pred Ccccc
Confidence 86543
No 15
>PRK03624 putative acetyltransferase; Provisional
Probab=98.64 E-value=8.6e-08 Score=90.79 Aligned_cols=84 Identities=19% Similarity=0.145 Sum_probs=70.1
Q ss_pred EEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch---hhhHHHHHhcc
Q 001893 852 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKF 928 (999)
Q Consensus 852 y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w~~kf 928 (999)
+.+++..++++||.+.+...+ +.+.+..++|+|+|||+|+|+.|+..+++.++..|++++.+.+. +.++.+|.+ +
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k-~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEA-L 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHH-c
Confidence 446777889999999876543 55778899999999999999999999999999999999888765 447789977 9
Q ss_pred CcEEcChhc
Q 001893 929 GFKKIDPEL 937 (999)
Q Consensus 929 GF~~i~~~e 937 (999)
||+..+...
T Consensus 124 GF~~~~~~~ 132 (140)
T PRK03624 124 GYEEQDRIS 132 (140)
T ss_pred CCccccEEe
Confidence 999865433
No 16
>PLN02825 amino-acid N-acetyltransferase
Probab=98.64 E-value=9e-08 Score=113.27 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=77.2
Q ss_pred EEEEEeCCeEEEEEEEEEec-CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcE
Q 001893 853 CAILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFK 931 (999)
Q Consensus 853 ~~VL~~~~~vVgaA~lrv~g-~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~ 931 (999)
.+|++.|+++||++.+..+. .+.+||-.+||+|+|||+|+|++||+.+|+.++..|+++|+|.+ ..+..||.+ +||.
T Consensus 409 f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~k-~GF~ 486 (515)
T PLN02825 409 FVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFVR-RGFS 486 (515)
T ss_pred EEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHHH-CCCE
Confidence 36789999999999987765 36899999999999999999999999999999999999999977 567888888 9999
Q ss_pred EcChhcccccc
Q 001893 932 KIDPELVCPYT 942 (999)
Q Consensus 932 ~i~~~e~~~~~ 942 (999)
..+.++|-.-+
T Consensus 487 ~~~~~~lp~~~ 497 (515)
T PLN02825 487 ECSIESLPEAR 497 (515)
T ss_pred EeChhhCCHHH
Confidence 99887764433
No 17
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.63 E-value=1.9e-07 Score=88.61 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=79.9
Q ss_pred HHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccccEEEEEEeCCeEEEEEEEEEe-----cC--ceEEeeeeee
Q 001893 811 SQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF-----GQ--EVAELPLVAT 883 (999)
Q Consensus 811 s~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G~y~~VL~~~~~vVgaA~lrv~-----g~--d~AEIp~VAT 883 (999)
.+..+++.++|.+-.+.. ..+.|..+. +..-++++++.+++|||.+.+... |. ..+.|--|||
T Consensus 11 ~~i~~l~~~~F~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v 80 (127)
T PF13527_consen 11 EQIIELFNEAFGDSESPP------EIWEYFRNL----YGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAV 80 (127)
T ss_dssp HHHHHHHHHHTTT-CHHH------HHHHHHHHH----HHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCCCCch------hhhhhhhcc----cCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 456667888885532221 122232221 112356888899999999888665 33 5799999999
Q ss_pred ecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEEc
Q 001893 884 SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (999)
Q Consensus 884 ~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 933 (999)
+|+|||+|+|++||.++++.++..|+..++|-+ ...++|.+ |||+.+
T Consensus 81 ~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~-~G~~~~ 127 (127)
T PF13527_consen 81 DPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRR-FGFEYA 127 (127)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHH-TTEEEE
T ss_pred CHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhc-CCCEEC
Confidence 999999999999999999999999999999877 44789988 999864
No 18
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.62 E-value=2.3e-08 Score=115.23 Aligned_cols=203 Identities=19% Similarity=0.290 Sum_probs=124.2
Q ss_pred ccccccccC-----CCCeecccCCCCcCCcccccCCCCCCCCccccCcccccchhhhccccccccccCcccc-cCchhhh
Q 001893 604 DDLCTICAD-----GGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSG-VDSVEQI 677 (999)
Q Consensus 604 dd~C~VC~d-----gG~Ll~CD~CprafH~~CL~l~~vP~G~W~Cp~C~~~~~~ek~v~~n~~a~a~Gr~sG-vds~eqi 677 (999)
.-.|.+|.. +.++..|+.|.++||+.|.-......+.|.+..|.........++... |+..+ ..++..
T Consensus 83 e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~-----g~~a~~~l~y~~- 156 (464)
T KOG4323|consen 83 ELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKK-----GRLARPSLPYPE- 156 (464)
T ss_pred ccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccc-----cccccccccCcc-
Confidence 345666653 345889999999999999965555567898988875421111111111 11110 000000
Q ss_pred hhhhhhhhcccccc-cCccccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceecCCchhhHHH
Q 001893 678 TKRCIRIVKNLEAE-LSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSV 756 (999)
Q Consensus 678 ~kRc~R~vk~~~~e-~~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~~~C~~I~~~ 756 (999)
. +...+.... ...|.+|.... .+.+ +.||+|+.|..|||..|..+..-+.+..-|...||| ..|..-...
T Consensus 157 ~----~l~wD~~~~~n~qc~vC~~g~---~~~~-NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C-~~C~~~~~~ 227 (464)
T KOG4323|consen 157 A----SLDWDSGHKVNLQCSVCYCGG---PGAG-NRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC-DVCNRGPKK 227 (464)
T ss_pred c----ccccCccccccceeeeeecCC---cCcc-ceeeeecccccHHHHHhccCCCCHhhccCccceEee-hhhccchhh
Confidence 0 000000000 11288888654 2323 389999999999999999986544455557889999 799988888
Q ss_pred HHhhhccccccCch--hhHhhhhh--hccCCcccccCcCceEEEcc-CCCCC---hhHHHHHHHHHHHHhhcC
Q 001893 757 LQNLLVQEAEKLPE--FHLNAIKK--YAGNSLETVSDIDVRWRLLS-GKAAT---PETRLLLSQAVAIFHDCF 821 (999)
Q Consensus 757 Lq~LL~~g~e~lP~--~ll~~Ikk--~~e~Gle~~~~~di~W~LLs-Gk~as---~E~~~~Ls~AL~If~EcF 821 (999)
+..+-.+|++.+.. +.+....+ ++..-.++..+.+-.|..|. |...+ .+..+.+..|++-+...|
T Consensus 228 ~~r~t~~~~dv~~lal~~~~~~~~~k~~~~~~ei~~f~e~~~~slp~~e~~tsp~~~~~~~~lsal~~~~~~f 300 (464)
T KOG4323|consen 228 VPRLTLRWADVLHLALYNLKPMLKKKYFKSLVEILLFCEESWPSLPFYEPKTSPVTERSSSLLSALSSYKSRF 300 (464)
T ss_pred ccccccccccccchhhhhhhhhhccCCcccHHHHHHHHhhccccccccCCccccccchhhHHHHhhhcccccc
Confidence 88887777776443 33444333 44444455666777787765 55443 455677788888777777
No 19
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.61 E-value=1.1e-07 Score=107.16 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=75.7
Q ss_pred cccccEEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHh
Q 001893 847 EFGGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD 926 (999)
Q Consensus 847 dF~G~y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~ 926 (999)
|..--|+++++.++++||+|++ .+ + .|..|||+++|||+|+|+.||..|++.++..|+..++|.+.+.+..+|++
T Consensus 27 d~~~d~~vv~~~~~~lVg~g~l--~g-~--~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k 101 (332)
T TIGR00124 27 DAPLEIFIAVYEDEEIIGCGGI--AG-N--VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEY 101 (332)
T ss_pred cCCCCEEEEEEECCEEEEEEEE--ec-C--EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH
Confidence 3344678888999999999997 33 2 48899999999999999999999999999999999999999999999988
Q ss_pred ccCcEEcChhc
Q 001893 927 KFGFKKIDPEL 937 (999)
Q Consensus 927 kfGF~~i~~~e 937 (999)
+||..+....
T Consensus 102 -lGF~~i~~~~ 111 (332)
T TIGR00124 102 -CGFKTLAEAK 111 (332)
T ss_pred -cCCEEeeeec
Confidence 9999998755
No 20
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.55 E-value=3.8e-07 Score=85.61 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=70.1
Q ss_pred EEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEc---chhhhHHHHHhcc
Q 001893 852 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTDKF 928 (999)
Q Consensus 852 y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLp---A~~eA~~~w~~kf 928 (999)
+.++++.++++||++.++... +...|-.++|+|+|||||+|+.|++++++.+...|...+++. ....+..+|++ +
T Consensus 32 ~~~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~-~ 109 (131)
T TIGR01575 32 CYLLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKK-L 109 (131)
T ss_pred eEEEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHH-c
Confidence 345667789999999987644 567889999999999999999999999999999999999985 44567889988 9
Q ss_pred CcEEcCh
Q 001893 929 GFKKIDP 935 (999)
Q Consensus 929 GF~~i~~ 935 (999)
||+.++.
T Consensus 110 Gf~~~~~ 116 (131)
T TIGR01575 110 GFNEIAI 116 (131)
T ss_pred CCCcccc
Confidence 9998865
No 21
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.52 E-value=4e-07 Score=93.95 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=72.6
Q ss_pred ccccEEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch---hhhHHHH
Q 001893 848 FGGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIW 924 (999)
Q Consensus 848 F~G~y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w 924 (999)
+...+.++...++++||++.+.......++|-.++|.|+|||||+|+.|+..+++.++..|++++++.+. ..+..+|
T Consensus 99 ~~~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~y 178 (194)
T PRK10975 99 FDHQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLY 178 (194)
T ss_pred cCCcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHH
Confidence 3333434445678999999998777677999999999999999999999999999999999999988765 4568899
Q ss_pred HhccCcEEcCh
Q 001893 925 TDKFGFKKIDP 935 (999)
Q Consensus 925 ~~kfGF~~i~~ 935 (999)
++ +||+..+.
T Consensus 179 ek-~Gf~~~~~ 188 (194)
T PRK10975 179 IR-SGANIEST 188 (194)
T ss_pred HH-CCCeEeEE
Confidence 87 99998654
No 22
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.52 E-value=4e-07 Score=93.98 Aligned_cols=81 Identities=11% Similarity=0.028 Sum_probs=71.0
Q ss_pred EEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch---hhhHHHHHhccCc
Q 001893 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFGF 930 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w~~kfGF 930 (999)
++++.++++||++.+.......++|-.++|.|+|||+|+|+.|+..+++.+..+|+.+|.+.+. ..|+.||++ +||
T Consensus 102 i~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k-lGF 180 (191)
T TIGR02382 102 ILRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIR-SGA 180 (191)
T ss_pred EEEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-cCC
Confidence 3456689999999998776677899999999999999999999999999999999999999854 457889998 999
Q ss_pred EEcCh
Q 001893 931 KKIDP 935 (999)
Q Consensus 931 ~~i~~ 935 (999)
+....
T Consensus 181 ~~~~~ 185 (191)
T TIGR02382 181 NIEST 185 (191)
T ss_pred ccccc
Confidence 87654
No 23
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.51 E-value=3.4e-07 Score=106.36 Aligned_cols=85 Identities=14% Similarity=0.248 Sum_probs=74.2
Q ss_pred EEEEeCCeEEEEEEEEEec-CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEE
Q 001893 854 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 932 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g-~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 932 (999)
+|++.++++||++.+..+. ...+||..++|+|+|||+|+|++||+.+++.++..|++.+++.+. .+..||++ +||+.
T Consensus 325 ~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~k-~GF~~ 402 (429)
T TIGR01890 325 SIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFRE-RGFQT 402 (429)
T ss_pred EEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHHH-CCCEE
Confidence 4678899999999998874 468999999999999999999999999999999999999887653 56789987 99999
Q ss_pred cChhcccc
Q 001893 933 IDPELVCP 940 (999)
Q Consensus 933 i~~~e~~~ 940 (999)
++..++-.
T Consensus 403 ~g~~~l~~ 410 (429)
T TIGR01890 403 ASVDELPE 410 (429)
T ss_pred CChhhCCH
Confidence 98875543
No 24
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.51 E-value=4.5e-07 Score=98.74 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=72.8
Q ss_pred ccEEEEEEeCCeEEEEEEEEEe-cCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhh---HHHHH
Q 001893 850 GMYCAILTVNSSVVSAGILRVF-GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEA---ESIWT 925 (999)
Q Consensus 850 G~y~~VL~~~~~vVgaA~lrv~-g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA---~~~w~ 925 (999)
+.+.++++.++++||++.+.+. ....+||-.++|+|+|||+|+|+.||..+++.++..|++.+++.+...+ ..+|.
T Consensus 157 ~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~ 236 (266)
T TIGR03827 157 NVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA 236 (266)
T ss_pred CcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH
Confidence 3455677889999999998543 3467999999999999999999999999999999999999999887665 55787
Q ss_pred hccCcEEcChh
Q 001893 926 DKFGFKKIDPE 936 (999)
Q Consensus 926 ~kfGF~~i~~~ 936 (999)
+ +||+..+.-
T Consensus 237 k-~GF~~~G~l 246 (266)
T TIGR03827 237 R-LGYAYGGTL 246 (266)
T ss_pred H-cCCccccEE
Confidence 6 999987654
No 25
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.48 E-value=4.8e-07 Score=105.34 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=73.2
Q ss_pred EEEEeCCeEEEEEEEEEec-CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEE
Q 001893 854 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 932 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g-~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 932 (999)
++++.++++||++.+..+. ...++|..++|+|+|||+|+|++||+.+++.++..|++++++.+ ..|..||++ +||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~k-~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFLE-RGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHHH-CcCEE
Confidence 5778899999999887654 36799999999999999999999999999999999999998765 568999987 99999
Q ss_pred cChhcc
Q 001893 933 IDPELV 938 (999)
Q Consensus 933 i~~~e~ 938 (999)
++.+++
T Consensus 415 ~g~~~~ 420 (441)
T PRK05279 415 VDVDDL 420 (441)
T ss_pred CChhhC
Confidence 987654
No 26
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.48 E-value=8.4e-07 Score=86.70 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=71.8
Q ss_pred cccEEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch---hhhHHHHH
Q 001893 849 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWT 925 (999)
Q Consensus 849 ~G~y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w~ 925 (999)
.+++..+++.++++||.+.++.... .+++-.++|.|+|||+|+|+.|+..+++.+...|+..+++.+. ..++.+|+
T Consensus 38 ~~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~ 116 (146)
T PRK09491 38 ERYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE 116 (146)
T ss_pred cCceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH
Confidence 3555566778999999999887653 4678889999999999999999999999999999999888643 56788998
Q ss_pred hccCcEEcCh
Q 001893 926 DKFGFKKIDP 935 (999)
Q Consensus 926 ~kfGF~~i~~ 935 (999)
+ +||+..+.
T Consensus 117 k-~Gf~~~~~ 125 (146)
T PRK09491 117 S-LGFNEVTI 125 (146)
T ss_pred H-cCCEEeee
Confidence 8 99997764
No 27
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.47 E-value=3.8e-07 Score=91.00 Aligned_cols=85 Identities=21% Similarity=0.216 Sum_probs=72.5
Q ss_pred EEEEEe-CCeEEEEEEEEEecCceEE--eeeeeeecCCcCCChhHHHHHHHHHHhhhcC-ceEEEEcchhhhHHHHHhcc
Q 001893 853 CAILTV-NSSVVSAGILRVFGQEVAE--LPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEEAESIWTDKF 928 (999)
Q Consensus 853 ~~VL~~-~~~vVgaA~lrv~g~d~AE--Ip~VAT~~~~RgqG~gr~L~~~IE~~l~~lg-V~~LvLpA~~eA~~~w~~kf 928 (999)
.+.+.. +|++|++|+|-.-+....+ |.||+|.+++||+|+|+.||....+.+.... =+.+.|.|+...+.||.+ |
T Consensus 51 Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~-~ 129 (155)
T COG2153 51 HLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS-F 129 (155)
T ss_pred eEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH-h
Confidence 355555 9999999999888876666 9999999999999999999987766665554 667999999999999999 9
Q ss_pred CcEEcChhcc
Q 001893 929 GFKKIDPELV 938 (999)
Q Consensus 929 GF~~i~~~e~ 938 (999)
||.+.+++-+
T Consensus 130 GFv~~~e~yl 139 (155)
T COG2153 130 GFVRVGEEYL 139 (155)
T ss_pred CcEEcCchhh
Confidence 9999998754
No 28
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.47 E-value=7.8e-08 Score=113.14 Aligned_cols=46 Identities=41% Similarity=1.193 Sum_probs=41.6
Q ss_pred ccccccccCCCCe---ecccCCCCcCCccccc----CCCCCCCCccccCcccc
Q 001893 604 DDLCTICADGGNL---LPCDGCPRAFHKECAS----LSSIPQGDWYCKYCQNM 649 (999)
Q Consensus 604 dd~C~VC~dgG~L---l~CD~CprafH~~CL~----l~~vP~G~W~Cp~C~~~ 649 (999)
.++|+.|...|.. +|||+||++||+.||. .+.+|.|.|+|+.|...
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 5699999999886 9999999999999995 45899999999999865
No 29
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.46 E-value=4.9e-07 Score=109.52 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=74.1
Q ss_pred EEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEEc
Q 001893 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 933 (999)
+|++.++++||++.+.....+.++|..++|+|+|||||+|+.||+.+++.++..|++.|+|.+. +..||++ +||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYek-~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFMK-QGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHHH-CCCEEC
Confidence 6778899999999998877778999999999999999999999999999999999999988763 6789998 999999
Q ss_pred Chhcc
Q 001893 934 DPELV 938 (999)
Q Consensus 934 ~~~e~ 938 (999)
+..++
T Consensus 583 ~~~~~ 587 (614)
T PRK12308 583 SKSLL 587 (614)
T ss_pred CcccC
Confidence 86654
No 30
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.44 E-value=1.3e-07 Score=111.22 Aligned_cols=49 Identities=39% Similarity=0.999 Sum_probs=41.8
Q ss_pred ccccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceecCCch
Q 001893 694 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 751 (999)
Q Consensus 694 ~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~~~C~ 751 (999)
+|..|++.+ .| ..+|+||.|++.||+.||.|+- ..+.+|.|.||| +.|.
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePPl--~~eniP~g~W~C-~ec~ 303 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPPL--EPENIPPGSWFC-PECK 303 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCCC--CcccCCCCcccc-CCCe
Confidence 799999875 23 6789999999999999999952 367899999999 7886
No 31
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.42 E-value=1.4e-07 Score=95.80 Aligned_cols=124 Identities=20% Similarity=0.411 Sum_probs=69.7
Q ss_pred ccccccC------CCCeecccCCCCcCCcccccC--------CCCCCCCc--cccCcccccchhhhccccccccccCccc
Q 001893 606 LCTICAD------GGNLLPCDGCPRAFHKECASL--------SSIPQGDW--YCKYCQNMFERKRFLQHDANAVEAGRVS 669 (999)
Q Consensus 606 ~C~VC~d------gG~Ll~CD~CprafH~~CL~l--------~~vP~G~W--~Cp~C~~~~~~ek~v~~n~~a~a~Gr~s 669 (999)
.|.+|+. .|.|++|.+|..+||..||+. +.|-++.+ .|..|....++++..+++......-...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 3777752 366999999999999999973 34555554 7999987666555555544433332222
Q ss_pred ccCchh---hhhhhhhhhhcccccccCccccccCCCCCCCCCCCCceecCCCCCCccCcccccccc
Q 001893 670 GVDSVE---QITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 732 (999)
Q Consensus 670 Gvds~e---qi~kRc~R~vk~~~~e~~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~ 732 (999)
|..... ..+.+.+. .+..++++=...-..+....+..++.|..|..|.++||+..|++..
T Consensus 81 G~~c~pfr~r~T~kQEe---~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 81 GPSCKPFRPRKTPKQEE---KLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CCCCcccCCCCCcHHHH---HHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 222111 11111111 1111111111111111111223567899999999999999999853
No 32
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.42 E-value=7.8e-08 Score=109.62 Aligned_cols=124 Identities=27% Similarity=0.669 Sum_probs=80.0
Q ss_pred CCccccccccccCC-----CCeecccCCCCcCCcccccCCCCCCCCccccCccccc--------ch--hhhcccccc---
Q 001893 600 GKDNDDLCTICADG-----GNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF--------ER--KRFLQHDAN--- 661 (999)
Q Consensus 600 ~~~ndd~C~VC~dg-----G~Ll~CD~CprafH~~CL~l~~vP~G~W~Cp~C~~~~--------~~--ek~v~~n~~--- 661 (999)
+++-|+.|.+|... ..+++||+|.-+.|+.|.++.-+|+|.|+|..|...- ++ .+.......
T Consensus 189 ~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW 268 (669)
T COG5141 189 SDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRW 268 (669)
T ss_pred chhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCch
Confidence 34578899999854 3399999999999999999999999999999997531 11 111110000
Q ss_pred -----c-----cccCcccccCchhhhhhhhhhhhcccccccCccccccCCCCCCCCCCCCceecCC--CCCCccCccccc
Q 001893 662 -----A-----VEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLK 729 (999)
Q Consensus 662 -----a-----~a~Gr~sGvds~eqi~kRc~R~vk~~~~e~~~C~vC~~~d~s~sg~~~~tLL~CD--qCdraYHv~CL~ 729 (999)
+ ..-+.....++++.+.. +.. .....+|.+|+.. .++.|+|. .|-++||+.|.+
T Consensus 269 ~H~iCA~~~pelsF~~l~~~dpI~~i~s-----Vs~-srwkl~C~iCk~~--------~GtcIqCs~~nC~~aYHVtCAr 334 (669)
T COG5141 269 GHVICAMFNPELSFGHLLSKDPIDNIAS-----VSS-SRWKLGCLICKEF--------GGTCIQCSYFNCTRAYHVTCAR 334 (669)
T ss_pred HhHhHHHhcchhccccccccchhhhhcc-----cch-hhHhheeeEEccc--------Ccceeeecccchhhhhhhhhhh
Confidence 0 00111222233322110 111 1122359999974 57999998 799999999999
Q ss_pred cccCCccc
Q 001893 730 KHKMADLR 737 (999)
Q Consensus 730 p~~~~~Lk 737 (999)
..+...++
T Consensus 335 rag~f~~~ 342 (669)
T COG5141 335 RAGYFDLN 342 (669)
T ss_pred hcchhhhh
Confidence 88766654
No 33
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.40 E-value=1.2e-07 Score=112.46 Aligned_cols=135 Identities=26% Similarity=0.529 Sum_probs=78.3
Q ss_pred cccccccccCC--CCee-cccCCCCcCCcccccCCCCCCCCccccCcccccchhhhcccccc--ccccCcccccCchhhh
Q 001893 603 NDDLCTICADG--GNLL-PCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDAN--AVEAGRVSGVDSVEQI 677 (999)
Q Consensus 603 ndd~C~VC~dg--G~Ll-~CD~CprafH~~CL~l~~vP~G~W~Cp~C~~~~~~ek~v~~n~~--a~a~Gr~sGvds~eqi 677 (999)
....|.+|... ..|+ .=..|..-||..|++ .|..-.-.||.|+..|.+......-.. .+. ....+...++
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~--sWsR~aqTCPiDR~EF~~v~V~eS~~~~~~vR---~lP~EEs~~~ 196 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVG--SWSRCAQTCPVDRGEFGEVKVLESTGIEANVR---CLPSEESENI 196 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhh--hhhhhcccCchhhhhhheeeeeccccccceeE---ecchhhhhhh
Confidence 34567777632 2222 223477888888884 222223468888876654332221111 000 0000000111
Q ss_pred hhh----hhhhhcccccccCccccccCCCCCCCCCCCCceecCCCCCCc-cCccccccccCCcccCCCCCcceecCCchh
Q 001893 678 TKR----CIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCERE-FHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (999)
Q Consensus 678 ~kR----c~R~vk~~~~e~~~C~vC~~~d~s~sg~~~~tLL~CDqCdra-YHv~CL~p~~~~~LkelP~g~WfC~~~C~~ 752 (999)
+.. ..........+...|.+|..++ .+..||+||.|... ||++||+| +|.++|-+.||| .+|..
T Consensus 197 ~e~~~d~~~d~~~~~~~E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~d 265 (1134)
T KOG0825|consen 197 LEKGGDEKQDQISGLSQEEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSL 265 (1134)
T ss_pred hhhccccccccccCcccccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccchh
Confidence 000 0000112233455699999886 67889999999998 99999998 899999999999 89974
Q ss_pred h
Q 001893 753 I 753 (999)
Q Consensus 753 I 753 (999)
+
T Consensus 266 L 266 (1134)
T KOG0825|consen 266 L 266 (1134)
T ss_pred h
Confidence 3
No 34
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.40 E-value=1.6e-06 Score=85.06 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=69.3
Q ss_pred cEEEEEEeCCeEEEEEEEEEec----CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhh-cCceEEEEcch---hhhHH
Q 001893 851 MYCAILTVNSSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAA---EEAES 922 (999)
Q Consensus 851 ~y~~VL~~~~~vVgaA~lrv~g----~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~-lgV~~LvLpA~---~eA~~ 922 (999)
.+.+++..++++||++.+.... ...+++. ++|.|+|||+|+|+.|++.+.+.+.. +|.+++.+.+. ..|+.
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 4557778899999999987542 2356664 89999999999999999999999988 79888877764 56788
Q ss_pred HHHhccCcEEcChhc
Q 001893 923 IWTDKFGFKKIDPEL 937 (999)
Q Consensus 923 ~w~~kfGF~~i~~~e 937 (999)
+|++ +||...+...
T Consensus 130 ~y~k-~GF~~~g~~~ 143 (162)
T PRK10140 130 VYKK-YGFEIEGTGK 143 (162)
T ss_pred HHHH-CCCEEEeecc
Confidence 9987 9999887643
No 35
>PRK13688 hypothetical protein; Provisional
Probab=98.38 E-value=1.4e-06 Score=88.57 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=66.4
Q ss_pred EEEEeCCeEEEEEEEEEe----------cCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHH
Q 001893 854 AILTVNSSVVSAGILRVF----------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI 923 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~----------g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~ 923 (999)
+++..++++||++.+... ..+.++|-.++|+|+|||||+|++||+.+++. ++. +.+.+...|..|
T Consensus 48 ~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~F 122 (156)
T PRK13688 48 YGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDF 122 (156)
T ss_pred EEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHH
Confidence 456678999998887542 24678999999999999999999999876543 443 445567788999
Q ss_pred HHhccCcEEcChhcccccccccceeccCC
Q 001893 924 WTDKFGFKKIDPELVCPYTESGVLSWSPS 952 (999)
Q Consensus 924 w~~kfGF~~i~~~e~~~~~~~~~l~~~~~ 952 (999)
|.+ +||..++...-. ....+.|.|.
T Consensus 123 Y~k-~GF~~~~~~~d~---~~~~~~~~p~ 147 (156)
T PRK13688 123 WLK-LGFTPVEYKNDE---GEDPLVWHPE 147 (156)
T ss_pred HHh-CCCEEeEEecCC---CcceEEECcC
Confidence 998 999988766211 1334456565
No 36
>PRK09831 putative acyltransferase; Provisional
Probab=98.38 E-value=1.1e-06 Score=86.56 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=62.8
Q ss_pred EEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEEc
Q 001893 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 933 (999)
+|+..++++||.+.+.. ..+..++|+|+|||+|+|++||..+++.+.. +.+.+...|+.||++ +||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k-~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFER-YGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHH-CCCEEe
Confidence 56788999999988742 4678899999999999999999999998776 455677889999999 999999
Q ss_pred Chhc
Q 001893 934 DPEL 937 (999)
Q Consensus 934 ~~~e 937 (999)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 8865
No 37
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.37 E-value=1.9e-06 Score=87.43 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=72.3
Q ss_pred EEEEEeCCe-EEEEEEEEEecC---ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch---hhhHHHHH
Q 001893 853 CAILTVNSS-VVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWT 925 (999)
Q Consensus 853 ~~VL~~~~~-vVgaA~lrv~g~---d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w~ 925 (999)
+++..+++. .|||+....... .-++|..+||+++|||||||++|+..+.+.++..|+..++|.+. ..|..+|+
T Consensus 58 ~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~ 137 (165)
T KOG3139|consen 58 CFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYE 137 (165)
T ss_pred EEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHH
Confidence 344444333 488777665443 35999999999999999999999999999999999999999987 56788999
Q ss_pred hccCcEEcChhcccccccccceec
Q 001893 926 DKFGFKKIDPELVCPYTESGVLSW 949 (999)
Q Consensus 926 ~kfGF~~i~~~e~~~~~~~~~l~~ 949 (999)
+ |||.+... +..|.-+....|
T Consensus 138 s-LGF~r~~r--~~~YYlng~dA~ 158 (165)
T KOG3139|consen 138 S-LGFKRDKR--LFRYYLNGMDAL 158 (165)
T ss_pred h-cCceEecc--eeEEEECCcceE
Confidence 9 99999743 444554444444
No 38
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.33 E-value=1.7e-06 Score=85.50 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=75.4
Q ss_pred cEEEEEEe--CCeEEEEEEEEEec------CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHH
Q 001893 851 MYCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAES 922 (999)
Q Consensus 851 ~y~~VL~~--~~~vVgaA~lrv~g------~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~ 922 (999)
+|.+|+++ .++|||+|+|.|-- .--.+|.=|+|+++||||++|+.|+..|-.++.++|+-.+.|.-.+++++
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 66677764 38999999997732 24578888999999999999999999999999999999999999999999
Q ss_pred HHHhccCcEEcChhc
Q 001893 923 IWTDKFGFKKIDPEL 937 (999)
Q Consensus 923 ~w~~kfGF~~i~~~e 937 (999)
||++ |||+..+.+.
T Consensus 133 FYeK-cG~s~~~~~M 146 (150)
T KOG3396|consen 133 FYEK-CGYSNAGNEM 146 (150)
T ss_pred HHHH-cCccccchhh
Confidence 9999 9999887443
No 39
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.31 E-value=2.2e-07 Score=109.60 Aligned_cols=90 Identities=30% Similarity=0.862 Sum_probs=72.3
Q ss_pred ccccccccccCC-----CCeecccCCCCcCCcccccC--CC-CCCCCccccCcccccchhhhccccccccccCcccccCc
Q 001893 602 DNDDLCTICADG-----GNLLPCDGCPRAFHKECASL--SS-IPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDS 673 (999)
Q Consensus 602 ~ndd~C~VC~dg-----G~Ll~CD~CprafH~~CL~l--~~-vP~G~W~Cp~C~~~~~~ek~v~~n~~a~a~Gr~sGvds 673 (999)
....+|.+|+.. |.|+.|..|...||.+|+.+ .. +-.+-|.|+.|+.
T Consensus 16 ~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv------------------------- 70 (694)
T KOG4443|consen 16 IVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV------------------------- 70 (694)
T ss_pred hhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee-------------------------
Confidence 355778888854 45999999999999999962 21 1234499999983
Q ss_pred hhhhhhhhhhhhcccccccCccccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceec
Q 001893 674 VEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCC 747 (999)
Q Consensus 674 ~eqi~kRc~R~vk~~~~e~~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~ 747 (999)
|..|+..+ ++...++|+.|+-.||.+|..| +++.+|.+.|+|+
T Consensus 71 ---------------------Ce~c~~~g------D~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~ck 113 (694)
T KOG4443|consen 71 ---------------------CEACGTTG------DPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLCK 113 (694)
T ss_pred ---------------------eeeccccC------CcccccccccccccccccccCC----ccccccCcccccH
Confidence 77787543 6778999999999999999998 6889999999994
No 40
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.30 E-value=2.6e-06 Score=84.96 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=64.9
Q ss_pred eEEEEEEEEEecCc-----eEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCc-eEEEEcchh---hhHHHHHhccCcE
Q 001893 861 SVVSAGILRVFGQE-----VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV-KSIVLPAAE---EAESIWTDKFGFK 931 (999)
Q Consensus 861 ~vVgaA~lrv~g~d-----~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV-~~LvLpA~~---eA~~~w~~kfGF~ 931 (999)
+++|....+..... .++|..+||+|+|||+|+|++|++.+++.+...+. ..++|.+.. .|+.+|++ +||+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~-~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRK-LGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHH-cCCE
Confidence 58898888644432 79999999999999999999999999999999997 899999884 46788888 9999
Q ss_pred EcChhc
Q 001893 932 KIDPEL 937 (999)
Q Consensus 932 ~i~~~e 937 (999)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 986544
No 41
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.27 E-value=1.8e-07 Score=101.07 Aligned_cols=101 Identities=24% Similarity=0.553 Sum_probs=70.9
Q ss_pred CCCCCeEEEeeCcEEeecceecCCCeeecCCCceecccccccccCcCCCCCCcceEEccCCcchhHhhhhhccCCCCCCC
Q 001893 522 LPDGTEVGYYACGQKLLEGYKNGLGIICHCCNSEVSPSQFEAHAGWSSRRKPYAHIYTSNGVSLHQLAISLSKGRQYPGK 601 (999)
Q Consensus 522 L~dgt~V~Y~~~Gq~ll~G~k~g~GI~C~cC~~~~SPS~FE~HAG~~srRkPy~~I~~s~G~SL~dLa~~l~~~~~~s~~ 601 (999)
++...+-.+..-.+-.++| +..+-|+|..|....+|+..+....+.+.-+. +.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~-r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KT------------------------Y~W~ 310 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQS-RRNSWIVCKPCATRPHPYCVAMIPELVGQYKT------------------------YFWK 310 (381)
T ss_pred cchhhhhhhhcchhhhhhh-hhccceeecccccCCCCcchhcCHHHHhHHhh------------------------cchh
Confidence 4444444333222234444 67789999999999999888765543322222 2222
Q ss_pred c-cccccccccCC---CCeecccCCCCcCCcccccCCCCCCCCcccc-Ccc
Q 001893 602 D-NDDLCTICADG---GNLLPCDGCPRAFHKECASLSSIPQGDWYCK-YCQ 647 (999)
Q Consensus 602 ~-ndd~C~VC~dg---G~Ll~CD~CprafH~~CL~l~~vP~G~W~Cp-~C~ 647 (999)
. ....|.||+.+ .++++||.|+|+||++|+++..+|.|.|+|. .|.
T Consensus 311 C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 311 CSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCR 361 (381)
T ss_pred hcccHhhhccCCcccchheeccccccCCCCccccccccccCccchhhhHHH
Confidence 2 34679999964 6799999999999999999999999999998 454
No 42
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.27 E-value=2.4e-07 Score=99.67 Aligned_cols=85 Identities=28% Similarity=0.608 Sum_probs=60.0
Q ss_pred cCCCeeecCCCceecccccccccCcCCCCCCcceEEccCCcchhHhhhhhccCCCCCCCccccccccccCC---CCeecc
Q 001893 543 NGLGIICHCCNSEVSPSQFEAHAGWSSRRKPYAHIYTSNGVSLHQLAISLSKGRQYPGKDNDDLCTICADG---GNLLPC 619 (999)
Q Consensus 543 ~g~GI~C~cC~~~~SPS~FE~HAG~~srRkPy~~I~~s~G~SL~dLa~~l~~~~~~s~~~ndd~C~VC~dg---G~Ll~C 619 (999)
-.+.+-|+-|++.-+||.....+.|-..-+.|.+.. .....|.+|+.. ++|++|
T Consensus 243 peelvscsdcgrsghpsclqft~nm~~avk~yrwqc-----------------------ieck~csicgtsenddqllfc 299 (336)
T KOG1244|consen 243 PEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQC-----------------------IECKYCSICGTSENDDQLLFC 299 (336)
T ss_pred chhhcchhhcCCCCCcchhhhhHHHHHHHHhheeee-----------------------eecceeccccCcCCCceeEee
Confidence 445677888887777776655555432222222211 234679999843 459999
Q ss_pred cCCCCcCCccccc--CCCCCCCCccccCccccc
Q 001893 620 DGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 650 (999)
Q Consensus 620 D~CprafH~~CL~--l~~vP~G~W~Cp~C~~~~ 650 (999)
|.|+|+||++||. +.+.|+|.|.|..|...+
T Consensus 300 ddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 300 DDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred cccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 9999999999995 678899999999997544
No 43
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.26 E-value=5e-06 Score=90.52 Aligned_cols=84 Identities=7% Similarity=-0.019 Sum_probs=67.6
Q ss_pred ccEEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch-hhhHHHHHhcc
Q 001893 850 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-EEAESIWTDKF 928 (999)
Q Consensus 850 G~y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~-~eA~~~w~~kf 928 (999)
..+.+|+..++++||++.+.......+++-.++|+|+|||+|+|++||+.+++.+. +.-.+++... ..|+.||.+ +
T Consensus 45 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~-~ 121 (292)
T TIGR03448 45 HTRHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASR-L 121 (292)
T ss_pred CceEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHH-C
Confidence 34567778899999999988875556889999999999999999999999999875 2234454443 678999998 9
Q ss_pred CcEEcChh
Q 001893 929 GFKKIDPE 936 (999)
Q Consensus 929 GF~~i~~~ 936 (999)
||+.....
T Consensus 122 Gf~~~~~~ 129 (292)
T TIGR03448 122 GLVPTREL 129 (292)
T ss_pred CCEEccEE
Confidence 99988653
No 44
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.23 E-value=7.6e-06 Score=80.20 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=70.4
Q ss_pred EEEEeCCeEEEEEEEEEecC--ceEEeeeeeeecCCcCCChhHHHHHHHHHHh-hhcCceEEEEcch---hhhHHHHHhc
Q 001893 854 AILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAA---EEAESIWTDK 927 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g~--d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l-~~lgV~~LvLpA~---~eA~~~w~~k 927 (999)
+|.+.+|++||.+.++.... ..+++- +-+.++||++|+|+.|+..|++.+ ..+|+++|.+... ..++.+|++
T Consensus 54 ~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~- 131 (155)
T PF13420_consen 54 LVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKK- 131 (155)
T ss_dssp EEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHH-
T ss_pred EEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHh-
Confidence 33335999999999997653 578887 556699999999999999999999 9999999987655 667889999
Q ss_pred cCcEEcChhcccccccc
Q 001893 928 FGFKKIDPELVCPYTES 944 (999)
Q Consensus 928 fGF~~i~~~e~~~~~~~ 944 (999)
+||+..+...---+..+
T Consensus 132 ~GF~~~g~~~~~~~~~~ 148 (155)
T PF13420_consen 132 LGFEEEGELKDHIFING 148 (155)
T ss_dssp TTEEEEEEEEEEEEETT
T ss_pred CCCEEEEEEecEEEECC
Confidence 99999977544333333
No 45
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.22 E-value=4.6e-06 Score=83.81 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=66.7
Q ss_pred EEEEEE-eCCeEEEEEEEEEe--cCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch---hhhHHHHH
Q 001893 852 YCAILT-VNSSVVSAGILRVF--GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWT 925 (999)
Q Consensus 852 y~~VL~-~~~~vVgaA~lrv~--g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w~ 925 (999)
+.++++ .++++||.+.+... ..+.+.+-.+||+|+|||+|+|+.|++.+++.+...++.+|.+.+. ..|+.+|+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 345666 57899998865433 2356889999999999999999999999999999999998888765 55567888
Q ss_pred hccCcEEcCh
Q 001893 926 DKFGFKKIDP 935 (999)
Q Consensus 926 ~kfGF~~i~~ 935 (999)
+ +||+....
T Consensus 120 k-~G~~~~~~ 128 (157)
T TIGR02406 120 A-LARRRGVH 128 (157)
T ss_pred H-hCcccCCC
Confidence 8 99987443
No 46
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.21 E-value=7.5e-07 Score=111.48 Aligned_cols=122 Identities=26% Similarity=0.640 Sum_probs=77.8
Q ss_pred CCCccccccccccCCC-----CeecccCCCCcCCcccccCCCCCCCCccccCcccccchh----------hhcccccc--
Q 001893 599 PGKDNDDLCTICADGG-----NLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERK----------RFLQHDAN-- 661 (999)
Q Consensus 599 s~~~ndd~C~VC~dgG-----~Ll~CD~CprafH~~CL~l~~vP~G~W~Cp~C~~~~~~e----------k~v~~n~~-- 661 (999)
...+.|..|.||.++. .+++||+|.-++|+.|.++.-+|+|.|+|..|....++. ........
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgr 293 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGR 293 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCc
Confidence 3446788999999753 489999999999999999999999999999998653322 01100000
Q ss_pred ------ccccCc-----ccccCchhhhhhhhhhhhcccccccCccccccCCCCCCCCCCCCceecCC--CCCCccCcccc
Q 001893 662 ------AVEAGR-----VSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCL 728 (999)
Q Consensus 662 ------a~a~Gr-----~sGvds~eqi~kRc~R~vk~~~~e~~~C~vC~~~d~s~sg~~~~tLL~CD--qCdraYHv~CL 728 (999)
+.-.+. ....++++ .++......+ ...|++|+.. +.+..++|. .|-.+||++|.
T Consensus 294 w~Hv~caiwipev~F~nt~~~E~I~-----~i~~i~~aRw-kL~cy~cK~~-------~~gaciqcs~~~c~~a~hvtca 360 (1051)
T KOG0955|consen 294 WAHVVCAIWIPEVSFANTVFLEPID-----SIENIPPARW-KLTCYICKQK-------GLGACIQCSKANCYTAFHVTCA 360 (1051)
T ss_pred eeeeehhhcccccccccchhhcccc-----chhcCcHhhh-hceeeeeccC-------CCCcceecchhhhhhhhhhhhH
Confidence 000000 00111111 1111111111 2359999974 257889998 79999999999
Q ss_pred ccccC
Q 001893 729 KKHKM 733 (999)
Q Consensus 729 ~p~~~ 733 (999)
...++
T Consensus 361 ~~agl 365 (1051)
T KOG0955|consen 361 RRAGL 365 (1051)
T ss_pred hhcCc
Confidence 88764
No 47
>PHA00673 acetyltransferase domain containing protein
Probab=98.19 E-value=7.6e-06 Score=83.27 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=72.9
Q ss_pred cEEEEEEeCCeEEEEEEEEEec------CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhh--hHH
Q 001893 851 MYCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AES 922 (999)
Q Consensus 851 ~y~~VL~~~~~vVgaA~lrv~g------~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e--A~~ 922 (999)
-.-+|.+.+|+|||++.+.+.. ...+.|-.|.|++++||||+|++||+..++.++..|+..|.+.|.++ .+.
T Consensus 55 ~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 55 AHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred cEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 3446777899999999998755 35678999999999999999999999999999999999999999865 588
Q ss_pred HHHhccCcEEcCh
Q 001893 923 IWTDKFGFKKIDP 935 (999)
Q Consensus 923 ~w~~kfGF~~i~~ 935 (999)
||.+ .|++....
T Consensus 135 fy~~-~g~~~~~~ 146 (154)
T PHA00673 135 LLPA-AGYRETNR 146 (154)
T ss_pred HHHh-CCchhhch
Confidence 9999 99987554
No 48
>PHA01807 hypothetical protein
Probab=98.14 E-value=6.2e-06 Score=83.71 Aligned_cols=82 Identities=9% Similarity=0.002 Sum_probs=64.4
Q ss_pred EEEEEEeCCeEEEEEEEEEecC----ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhh---hHHHH
Q 001893 852 YCAILTVNSSVVSAGILRVFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIW 924 (999)
Q Consensus 852 y~~VL~~~~~vVgaA~lrv~g~----d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e---A~~~w 924 (999)
+.++++.++++||.+.+..... .+.+|..+.|+|+|||+|+|+.||+.+++.++..|+..|.+.+.++ |+.+|
T Consensus 54 ~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y 133 (153)
T PHA01807 54 TELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHY 133 (153)
T ss_pred eEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHH
Confidence 3366778999999999865432 2344555799999999999999999999999999999999988755 46677
Q ss_pred HhccCcEEcChh
Q 001893 925 TDKFGFKKIDPE 936 (999)
Q Consensus 925 ~~kfGF~~i~~~ 936 (999)
++ |.+.+.+
T Consensus 134 ~~---~~~~~~~ 142 (153)
T PHA01807 134 RR---VKPYGQE 142 (153)
T ss_pred Hh---cCccCCc
Confidence 76 4444443
No 49
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.14 E-value=8e-06 Score=88.92 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=64.7
Q ss_pred CCeEEEEEEEEEecC--ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch---hhhHHHHHhccCcEEc
Q 001893 859 NSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFGFKKI 933 (999)
Q Consensus 859 ~~~vVgaA~lrv~g~--d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w~~kfGF~~i 933 (999)
++++||.+.+.+... +.++|-.++|+|+|||+|+|+.||..+++.++..|+..+.+... ..|..||++ +||+..
T Consensus 208 ~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k-~GF~~~ 286 (292)
T TIGR03448 208 PGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEK-LGFTVA 286 (292)
T ss_pred CCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHH-cCCEEc
Confidence 689999876666542 46888889999999999999999999999999999999888765 467899998 999876
Q ss_pred Ch
Q 001893 934 DP 935 (999)
Q Consensus 934 ~~ 935 (999)
..
T Consensus 287 ~~ 288 (292)
T TIGR03448 287 EV 288 (292)
T ss_pred cc
Confidence 53
No 50
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.13 E-value=8.2e-06 Score=97.87 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=70.0
Q ss_pred cccEEEEEEe--CCeEEEEEEEEEec------CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch---
Q 001893 849 GGMYCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA--- 917 (999)
Q Consensus 849 ~G~y~~VL~~--~~~vVgaA~lrv~g------~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~--- 917 (999)
.+.+.+|++. ++++||++....+. ...++|-.++|+|+|||+|+|++||..+++.++..|+.++.|.+.
T Consensus 121 ~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N 200 (547)
T TIGR03103 121 RAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDN 200 (547)
T ss_pred CCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCC
Confidence 3445566664 69999998753321 234789999999999999999999999999999999999987654
Q ss_pred hhhHHHHHhccCcEEcCh
Q 001893 918 EEAESIWTDKFGFKKIDP 935 (999)
Q Consensus 918 ~eA~~~w~~kfGF~~i~~ 935 (999)
..|+.||++ +||+.++.
T Consensus 201 ~~Ai~fY~k-lGf~~~~~ 217 (547)
T TIGR03103 201 EQAIALYEK-LGFRRIPV 217 (547)
T ss_pred HHHHHHHHH-CCCEEeeE
Confidence 678999988 99998864
No 51
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=98.03 E-value=2.7e-05 Score=76.68 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=69.5
Q ss_pred cccEEEEEEeCCeEEEEEEEEE------ecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhc-CceEEEEcchhhh-
Q 001893 849 GGMYCAILTVNSSVVSAGILRV------FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEA- 920 (999)
Q Consensus 849 ~G~y~~VL~~~~~vVgaA~lrv------~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~l-gV~~LvLpA~~eA- 920 (999)
.+.+.+|++.+|++||.+.+.- .......+-.+++.++|||+|+|+.+|.++.+.+... ++++|++...+.+
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 4667899999999999998753 1345677999999999999999999999999988766 8999999998755
Q ss_pred --HHHHHhccCcEEcChhcc
Q 001893 921 --ESIWTDKFGFKKIDPELV 938 (999)
Q Consensus 921 --~~~w~~kfGF~~i~~~e~ 938 (999)
+.+|++ +||+.++.-++
T Consensus 126 ~~~~~~~k-~GF~~~g~~~~ 144 (152)
T PF13523_consen 126 RAIRLYEK-AGFRKVGEFEF 144 (152)
T ss_dssp HHHHHHHH-TT-EEEEEEEE
T ss_pred HHHHHHHH-cCCEEeeEEEC
Confidence 556665 99999987654
No 52
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.01 E-value=2.7e-05 Score=71.45 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=56.7
Q ss_pred CCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEE-c-chhhhHHHHHhccCcEEcCh
Q 001893 859 NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL-P-AAEEAESIWTDKFGFKKIDP 935 (999)
Q Consensus 859 ~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvL-p-A~~eA~~~w~~kfGF~~i~~ 935 (999)
+++.+..+...+..++ ++|..|.|.|+|||+|+|+.|+.+|.+.+...|...+.. . .-..|+.+|++ +||+.+.+
T Consensus 6 ~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 6 DGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp CTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred ECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3355566665565545 999999999999999999999999999999888775332 2 23567889999 99999854
No 53
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.00 E-value=2.4e-05 Score=62.63 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=55.3
Q ss_pred EEEEeCCeEEEEEEEEEec--CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEE
Q 001893 854 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL 914 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g--~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvL 914 (999)
+++..++++||.+.+.... ...++|-.++|+++|||+|+|+.|+..+.+.+...|.+++++
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 4566789999999998876 478999999999999999999999999999999999999886
No 54
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.00 E-value=2.7e-06 Score=103.10 Aligned_cols=155 Identities=26% Similarity=0.497 Sum_probs=97.6
Q ss_pred CCCCcCCccccc--CCCCCCCCccccCcccccchhhhccccccccccCcccccCchhhhhhhhhhhhcccccccCccccc
Q 001893 621 GCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLC 698 (999)
Q Consensus 621 ~CprafH~~CL~--l~~vP~G~W~Cp~C~~~~~~ek~v~~n~~a~a~Gr~sGvds~eqi~kRc~R~vk~~~~e~~~C~vC 698 (999)
.|+|.||..|++ +..-|+++|.|+.|...... +...++. -...+..+|-+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~------------------~~~~~~~---------~~~~~~e~c~ic 53 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQ------------------VEAKDDD---------WDDAEQEACRIC 53 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccc------------------cccccCC---------cchhhhhhhhhh
Confidence 489999999996 55666899999999742110 0000000 012233469999
Q ss_pred cCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceecCCchh--hHHHHHhhhccc--cccCc-hhhH
Q 001893 699 RGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR--INSVLQNLLVQE--AEKLP-EFHL 773 (999)
Q Consensus 699 ~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~~~C~~--I~~~Lq~LL~~g--~e~lP-~~ll 773 (999)
.. .++++.||.|+.+||..|+.+ ++...|.+.|.|+ .|.. -..+.++++.|. +...+ ...-
T Consensus 54 ~~---------~g~~l~c~tC~~s~h~~cl~~----pl~~~p~~~~~c~-Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~ 119 (696)
T KOG0383|consen 54 AD---------GGELLWCDTCPASFHASCLGP----PLTPQPNGEFICP-RCFCPKNAGKIEKILGWRWKPTPKPREGNQ 119 (696)
T ss_pred cC---------CCcEEEeccccHHHHHHccCC----CCCcCCccceeee-eeccCCCcccccccceeEecCCCCccccCc
Confidence 85 468999999999999999987 6788888889995 7731 122445555442 22223 2222
Q ss_pred hhhhhhccCCcccccCcCceEEEccCCCCChhHHHHHHHHHHHH
Q 001893 774 NAIKKYAGNSLETVSDIDVRWRLLSGKAATPETRLLLSQAVAIF 817 (999)
Q Consensus 774 ~~Ikk~~e~Gle~~~~~di~W~LLsGk~as~E~~~~Ls~AL~If 817 (999)
..+..+...+ .......++|+.+++.++.|....++...++.+
T Consensus 120 ~~~~~~~~~~-~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~ 162 (696)
T KOG0383|consen 120 GVISPRRSNG-IVEREFFVKWQGLSYWHCSWKSELLLQNPLNTL 162 (696)
T ss_pred CccCCccccc-chhhhcccccccCCccchhHHHHHHhhhhcccc
Confidence 2222222222 223467889999999999887777666544444
No 55
>PRK01346 hypothetical protein; Provisional
Probab=98.00 E-value=2.1e-05 Score=90.36 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=71.8
Q ss_pred EEEEEeCCeEEEEEEEEEe------cC--ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHH
Q 001893 853 CAILTVNSSVVSAGILRVF------GQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIW 924 (999)
Q Consensus 853 ~~VL~~~~~vVgaA~lrv~------g~--d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w 924 (999)
+++++.++++||.+.+..+ +. ..+.|..|+|+|+|||+|+|++||..+++.++..|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 4677889999999987643 22 468999999999999999999999999999999999988888765 4789
Q ss_pred HhccCcEEcChhccccc
Q 001893 925 TDKFGFKKIDPELVCPY 941 (999)
Q Consensus 925 ~~kfGF~~i~~~e~~~~ 941 (999)
.+ |||.........++
T Consensus 127 ~r-~Gf~~~~~~~~~~i 142 (411)
T PRK01346 127 GR-FGYGPATYSQSLSV 142 (411)
T ss_pred hh-CCCeeccceEEEEE
Confidence 98 99998877544333
No 56
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.97 E-value=2.5e-06 Score=101.58 Aligned_cols=142 Identities=24% Similarity=0.500 Sum_probs=84.6
Q ss_pred CccccccccccCC-----CCeecccCCCCcCCcccccCCCCCCCCccccCcccccchhh--------hcccccccccc--
Q 001893 601 KDNDDLCTICADG-----GNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKR--------FLQHDANAVEA-- 665 (999)
Q Consensus 601 ~~ndd~C~VC~dg-----G~Ll~CD~CprafH~~CL~l~~vP~G~W~Cp~C~~~~~~ek--------~v~~n~~a~a~-- 665 (999)
-+++..|.+|..+ .+|++||.|.-..|+.|.++.++|+|.|.|..|.....+.. .+.+.......
T Consensus 268 ~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAH 347 (893)
T KOG0954|consen 268 YDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAH 347 (893)
T ss_pred ccccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeE
Confidence 3578889999844 56999999999999999999999999999999986543322 22211111000
Q ss_pred -------Cc--ccccCchhhhhhhhhhhhcccccccCccccccCCCCCCCCCCCCceecCC--CCCCccCccccccccCC
Q 001893 666 -------GR--VSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMA 734 (999)
Q Consensus 666 -------Gr--~sGvds~eqi~kRc~R~vk~~~~e~~~C~vC~~~d~s~sg~~~~tLL~CD--qCdraYHv~CL~p~~~~ 734 (999)
.. +.-.+-+++|++. ..++...+ ...|.+|+. ..+..|+|. .|..+||+.|...+++.
T Consensus 348 vsCALwIPEVsie~~ekmePItkf--s~IpesRw-slvC~LCk~--------k~GACIqCs~k~C~t~fHv~CA~~aG~~ 416 (893)
T KOG0954|consen 348 VSCALWIPEVSIECPEKMEPITKF--SHIPESRW-SLVCNLCKV--------KSGACIQCSNKTCRTAFHVTCAFEAGLE 416 (893)
T ss_pred eeeeeccceeeccCHhhcCccccc--CCCcHHHH-HHHHHHhcc--------cCcceEEecccchhhhccchhhhhcCCe
Confidence 00 0001111222110 00000000 123999985 346788887 89999999999998753
Q ss_pred c---ccCC--CCCcceecCCchhhH
Q 001893 735 D---LREL--PKGKWFCCMDCSRIN 754 (999)
Q Consensus 735 ~---Lkel--P~g~WfC~~~C~~I~ 754 (999)
. +.+. -...-|| ..|..+.
T Consensus 417 ~~~~~~~~D~v~~~s~c-~khs~~~ 440 (893)
T KOG0954|consen 417 MKTILKENDEVKFKSYC-SKHSDHR 440 (893)
T ss_pred eeeeeccCCchhheeec-ccccccc
Confidence 1 1111 1245678 4555444
No 57
>PRK10514 putative acetyltransferase; Provisional
Probab=97.95 E-value=3.5e-05 Score=74.84 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=59.3
Q ss_pred EEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEEc
Q 001893 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 933 (999)
+++..++++||++.+.- .++..++|+|+|||+|+|++||+.+++.+.. +...+...-..+..+|++ +||+..
T Consensus 53 ~~~~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~yek-~Gf~~~ 124 (145)
T PRK10514 53 VAVDERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYKK-MGFKVT 124 (145)
T ss_pred EEEecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHHH-CCCEEe
Confidence 44456889999887642 4566899999999999999999999997543 344445555788999998 999998
Q ss_pred Chhc
Q 001893 934 DPEL 937 (999)
Q Consensus 934 ~~~e 937 (999)
+...
T Consensus 125 ~~~~ 128 (145)
T PRK10514 125 GRSE 128 (145)
T ss_pred cccc
Confidence 7644
No 58
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.93 E-value=2.9e-05 Score=87.05 Aligned_cols=81 Identities=11% Similarity=0.029 Sum_probs=68.7
Q ss_pred cEEEEEEe---CCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch-----hhhHH
Q 001893 851 MYCAILTV---NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-----EEAES 922 (999)
Q Consensus 851 ~y~~VL~~---~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~-----~eA~~ 922 (999)
.|.+.+.. ++.+||++.++..+ +.++|-.+++++.+||+|+|++||..+++.++..|++.|+|... ..|+.
T Consensus 231 ~~~~~~~d~~gd~givG~~~~~~~~-~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~ 309 (320)
T TIGR01686 231 IVTVSMSDRFGDSGIIGIFVFEKKE-GNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLS 309 (320)
T ss_pred EEEEEEEecCCCCceEEEEEEEecC-CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHH
Confidence 45455443 57899999987654 67899999999999999999999999999999999999999764 46888
Q ss_pred HHHhccCcEEc
Q 001893 923 IWTDKFGFKKI 933 (999)
Q Consensus 923 ~w~~kfGF~~i 933 (999)
||++ +||...
T Consensus 310 fY~~-~GF~~~ 319 (320)
T TIGR01686 310 FYEQ-IGFEDE 319 (320)
T ss_pred HHHH-cCCccC
Confidence 9998 999853
No 59
>PRK10562 putative acetyltransferase; Provisional
Probab=97.88 E-value=4.8e-05 Score=74.53 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=59.5
Q ss_pred EEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEE
Q 001893 853 CAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 932 (999)
Q Consensus 853 ~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 932 (999)
.+++..++++||.+.+.. ...+..++|+|+|||+|+|+.||+.+++.+..+ .-.+...-..+..+|++ +||+.
T Consensus 50 ~~v~~~~~~~iG~~~~~~----~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~--~~~v~~~N~~s~~~y~k-~Gf~~ 122 (145)
T PRK10562 50 TWVWEEDGKLLGFVSVLE----GRFVGALFVAPKAVRRGIGKALMQHVQQRYPHL--SLEVYQKNQRAVNFYHA-QGFRI 122 (145)
T ss_pred EEEEEECCEEEEEEEEee----ccEEEEEEECHHHcCCCHHHHHHHHHHhhCCeE--EEEEEcCChHHHHHHHH-CCCEE
Confidence 356677899999998743 246788999999999999999999999975433 22233445678889999 99999
Q ss_pred cChh
Q 001893 933 IDPE 936 (999)
Q Consensus 933 i~~~ 936 (999)
++..
T Consensus 123 ~~~~ 126 (145)
T PRK10562 123 VDSA 126 (145)
T ss_pred cccc
Confidence 8753
No 60
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.87 E-value=7.5e-05 Score=76.05 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=67.0
Q ss_pred EEEEEeCCeEEEEEEEEEec--CceEEeeeeeeecCCcCCChhHHHHHHHHHHhh-hcCceEEEEcch---hhhHHHHHh
Q 001893 853 CAILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAA---EEAESIWTD 926 (999)
Q Consensus 853 ~~VL~~~~~vVgaA~lrv~g--~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~-~lgV~~LvLpA~---~eA~~~w~~ 926 (999)
.++++.++++||.+.+.... ...+++. +++.++|||+|+|+.++..+.+.+. .+|+++|++.+. ..+..+|++
T Consensus 59 ~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek 137 (186)
T PRK15130 59 RFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRK 137 (186)
T ss_pred EEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHH
Confidence 45667899999999886654 2467774 8999999999999999999999876 589999998765 466889999
Q ss_pred ccCcEEcCh
Q 001893 927 KFGFKKIDP 935 (999)
Q Consensus 927 kfGF~~i~~ 935 (999)
+||+..+.
T Consensus 138 -~GF~~~~~ 145 (186)
T PRK15130 138 -LGFEVEGE 145 (186)
T ss_pred -CCCEEEEE
Confidence 99998855
No 61
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.85 E-value=0.0001 Score=72.21 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=66.9
Q ss_pred EEEEeCCeEEEEEEEEEec--CceEEeeeeeeecCCcCCChhHHHHHHHHHHhh-hcCceEEEEcch---hhhHHHHHhc
Q 001893 854 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAA---EEAESIWTDK 927 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g--~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~-~lgV~~LvLpA~---~eA~~~w~~k 927 (999)
++++.+|++||++.+.... ...+++... +.+.+| +|||+.++.++++.+. .+++++|.+.+. ..++.+|++
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k- 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEK- 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHH-
Confidence 4557899999999997765 356788755 889999 9999999999999987 479999987654 567788888
Q ss_pred cCcEEcChhcc
Q 001893 928 FGFKKIDPELV 938 (999)
Q Consensus 928 fGF~~i~~~e~ 938 (999)
+||+..+....
T Consensus 131 ~Gf~~~g~~~~ 141 (156)
T TIGR03585 131 FGFEREGVFRQ 141 (156)
T ss_pred cCCeEeeeehh
Confidence 99998875443
No 62
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.82 E-value=3.8e-06 Score=69.38 Aligned_cols=48 Identities=31% Similarity=0.971 Sum_probs=36.7
Q ss_pred cccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceecCCch
Q 001893 695 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 751 (999)
Q Consensus 695 C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~~~C~ 751 (999)
|.+|++.+ ..+.||.|+.|.++||..|+.++. .....+.+.|+| +.|.
T Consensus 2 C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~--~~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPE--KAEEIPSGDWYC-PNCR 49 (51)
T ss_dssp BTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSH--SHHSHHSSSBSS-HHHH
T ss_pred CcCCCCcC------CCCCeEEcCCCChhhCcccCCCCh--hhccCCCCcEEC-cCCc
Confidence 78898743 678899999999999999999853 112334559999 5675
No 63
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.80 E-value=6.3e-05 Score=89.80 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=66.7
Q ss_pred eCCeEEEEEEEEEecCceE-----------Eeeeeee--------ecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchh
Q 001893 858 VNSSVVSAGILRVFGQEVA-----------ELPLVAT--------SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE 918 (999)
Q Consensus 858 ~~~~vVgaA~lrv~g~d~A-----------EIp~VAT--------~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ 918 (999)
.++.+||..+++....+.. ||-..++ .++|||+|+|+.||+.+|+.|+..|++.|+|.+..
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~ 500 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGI 500 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCc
Confidence 3578999999988764322 5555544 57899999999999999999999999999999999
Q ss_pred hhHHHHHhccCcEEcChhcc
Q 001893 919 EAESIWTDKFGFKKIDPELV 938 (999)
Q Consensus 919 eA~~~w~~kfGF~~i~~~e~ 938 (999)
.|..||.+ +||...++-..
T Consensus 501 ~A~~FY~k-lGf~~~g~ym~ 519 (522)
T TIGR01211 501 GVREYYRK-LGYELDGPYMS 519 (522)
T ss_pred hHHHHHHH-CCCEEEcceeE
Confidence 99999998 99998776443
No 64
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.75 E-value=0.00011 Score=75.38 Aligned_cols=83 Identities=8% Similarity=0.119 Sum_probs=64.9
Q ss_pred cEEEEEEeCCeEEEEEEEEEecC---ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhh-cCceEEEEcchhhh---HHH
Q 001893 851 MYCAILTVNSSVVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEEA---ESI 923 (999)
Q Consensus 851 ~y~~VL~~~~~vVgaA~lrv~g~---d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~-lgV~~LvLpA~~eA---~~~ 923 (999)
+|.++...++++||.+.+..... ..+||. +.+.++|||||+|+.++..+.+.+.. +|+++|++.+.+.+ ..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 44444445789999999876543 346665 46799999999999999999999876 79999999987655 556
Q ss_pred HHhccCcEEcCh
Q 001893 924 WTDKFGFKKIDP 935 (999)
Q Consensus 924 w~~kfGF~~i~~ 935 (999)
+++ +||+..+.
T Consensus 156 ~ek-~Gf~~~g~ 166 (194)
T PRK10809 156 LAR-LGFEKEGY 166 (194)
T ss_pred HHH-CCCcEEee
Confidence 667 99997654
No 65
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.73 E-value=8.5e-05 Score=80.99 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=69.1
Q ss_pred EEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceE-EEEcch-hhhHHHHHhccC
Q 001893 852 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS-IVLPAA-EEAESIWTDKFG 929 (999)
Q Consensus 852 y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~-LvLpA~-~eA~~~w~~kfG 929 (999)
.++-+..+|+||+.|...-.+...|+|-.|.|.|+|||+||+.+|+..|-..+-..|-.. |+..++ +-|..+|.+ .|
T Consensus 178 ~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~r-iG 256 (268)
T COG3393 178 RTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQR-IG 256 (268)
T ss_pred eEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHH-hC
Confidence 344456667999999999999999999999999999999999999999988777776554 444333 677889999 99
Q ss_pred cEEcCh
Q 001893 930 FKKIDP 935 (999)
Q Consensus 930 F~~i~~ 935 (999)
|+.+++
T Consensus 257 F~~~g~ 262 (268)
T COG3393 257 FREIGE 262 (268)
T ss_pred Ceecce
Confidence 999874
No 66
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.70 E-value=0.00015 Score=75.22 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=69.9
Q ss_pred EEEEEEeCCeEEEEEEEEEecC-----ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHh
Q 001893 852 YCAILTVNSSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD 926 (999)
Q Consensus 852 y~~VL~~~~~vVgaA~lrv~g~-----d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~ 926 (999)
..+|...++++||...+.-+.- ..-=|..+||+|+|||||+|++||...++.|+.+|...+++--. ..+| .
T Consensus 47 LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY-~ 122 (171)
T COG3153 47 LSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYY-S 122 (171)
T ss_pred eeEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---cccc-c
Confidence 3578888999999988876442 45668889999999999999999999999999999999887665 4567 4
Q ss_pred ccCcEEcChhcc
Q 001893 927 KFGFKKIDPELV 938 (999)
Q Consensus 927 kfGF~~i~~~e~ 938 (999)
+|||+......+
T Consensus 123 rfGF~~~~~~~l 134 (171)
T COG3153 123 RFGFEPAAGAKL 134 (171)
T ss_pred ccCcEEcccccc
Confidence 599999988766
No 67
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.68 E-value=2.1e-05 Score=95.66 Aligned_cols=49 Identities=43% Similarity=1.026 Sum_probs=42.9
Q ss_pred CccccccccccCCCCeecccCCCCcCCccccc--CCCCCCCCccccCcccc
Q 001893 601 KDNDDLCTICADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 649 (999)
Q Consensus 601 ~~ndd~C~VC~dgG~Ll~CD~CprafH~~CL~--l~~vP~G~W~Cp~C~~~ 649 (999)
..+...|.+|.++|++++||.|+.+||..|++ +...|.++|.|+.|...
T Consensus 44 ~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 44 DAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 34567899999999999999999999999996 66788888999999543
No 68
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.67 E-value=0.00025 Score=71.77 Aligned_cols=82 Identities=7% Similarity=0.066 Sum_probs=65.2
Q ss_pred EEEEeCCeEEEEEEEEEecC--ceEEeeeeeeecCCcCCChhHHHHHHHHHHhh-hcCceEEEEcchhhh---HHHHHhc
Q 001893 854 AILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAAEEA---ESIWTDK 927 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g~--d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~-~lgV~~LvLpA~~eA---~~~w~~k 927 (999)
+++..++++||.+.+..... ..+||.. .+.++|||+|||+.++.++.+.+. .+|+++|.+.+.+.+ ..++++
T Consensus 70 ~~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek- 147 (179)
T PRK10151 70 FMIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALR- 147 (179)
T ss_pred EEEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHH-
Confidence 45556899999999876543 4688875 689999999999999999999876 578999988876554 456666
Q ss_pred cCcEEcChhc
Q 001893 928 FGFKKIDPEL 937 (999)
Q Consensus 928 fGF~~i~~~e 937 (999)
+||+..+...
T Consensus 148 ~Gf~~~g~~~ 157 (179)
T PRK10151 148 NGFTLEGCLK 157 (179)
T ss_pred CCCEEEeEec
Confidence 9999876643
No 70
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.64 E-value=1.1e-05 Score=99.74 Aligned_cols=133 Identities=26% Similarity=0.424 Sum_probs=85.3
Q ss_pred CccccccccccCCCCeecccCCCCcCCccccc--CCCCCCCCccccCcccccchhhhccccccccccCcccccCch-hhh
Q 001893 601 KDNDDLCTICADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSV-EQI 677 (999)
Q Consensus 601 ~~ndd~C~VC~dgG~Ll~CD~CprafH~~CL~--l~~vP~G~W~Cp~C~~~~~~ek~v~~n~~a~a~Gr~sGvds~-eqi 677 (999)
..-+|.|.+|.+.|+++||..||+.||..|+. ...+|+..|.|-.|.... .+.+ +..+.+. ++.
T Consensus 341 ~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hk---------vngv----vd~vl~~~K~~ 407 (1414)
T KOG1473|consen 341 IEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHK---------VNGV----VDCVLPPSKNV 407 (1414)
T ss_pred eeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhc---------cCcc----cccccChhhcc
Confidence 34578999999999999999999999999995 568899999999998421 1111 1011110 000
Q ss_pred hh-hhhhh-----hcccccccCccccccCCCCCCCCCCCCceecCCC-CCCccCc-cccccccCCcccCCCCCcceecCC
Q 001893 678 TK-RCIRI-----VKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQ-CEREFHV-GCLKKHKMADLRELPKGKWFCCMD 749 (999)
Q Consensus 678 ~k-Rc~R~-----vk~~~~e~~~C~vC~~~d~s~sg~~~~tLL~CDq-CdraYHv-~CL~p~~~~~LkelP~g~WfC~~~ 749 (999)
.. |+.-. -..+-....-|.+|+. +++++.|+. |++.||. .||+.... -..++.+-|+| .+
T Consensus 408 ~~iR~~~iG~dr~gr~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~~--e~~L~d~i~~~-~e 475 (1414)
T KOG1473|consen 408 DSIRHTPIGRDRYGRKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTYV--EMYLCDGIWER-RE 475 (1414)
T ss_pred cceeccCCCcCccccchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHHH--HHhhccchhhh-HH
Confidence 00 11000 0000011123888873 468899997 9999998 99985421 23678899999 68
Q ss_pred chhhHHHHH
Q 001893 750 CSRINSVLQ 758 (999)
Q Consensus 750 C~~I~~~Lq 758 (999)
|..-.+.|.
T Consensus 476 e~~rqM~lT 484 (1414)
T KOG1473|consen 476 EIIRQMGLT 484 (1414)
T ss_pred HHHHhccch
Confidence 865444443
No 71
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.62 E-value=0.0003 Score=67.38 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=61.4
Q ss_pred cEEEEEEe--CCeEEEEEEEEEe--cCceEEeeeeeeecCCcCCChhHHHHHHHHHHh-hhcCceEEEEcchhhhHH---
Q 001893 851 MYCAILTV--NSSVVSAGILRVF--GQEVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAAEEAES--- 922 (999)
Q Consensus 851 ~y~~VL~~--~~~vVgaA~lrv~--g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l-~~lgV~~LvLpA~~eA~~--- 922 (999)
++.+++.. ++++||...++.. ....+||. +.+.++|||+|+|+.++..+.+.+ ..+|+.+|.....+.++.
T Consensus 56 ~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~ 134 (142)
T PF13302_consen 56 YYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRR 134 (142)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHH
T ss_pred ceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHH
Confidence 44444443 4589999999544 35899999 779999999999999999999999 799999999988876655
Q ss_pred HHHhccCcE
Q 001893 923 IWTDKFGFK 931 (999)
Q Consensus 923 ~w~~kfGF~ 931 (999)
++.+ +||+
T Consensus 135 ~~~k-~GF~ 142 (142)
T PF13302_consen 135 LLEK-LGFE 142 (142)
T ss_dssp HHHH-TT-E
T ss_pred HHHH-cCCC
Confidence 4444 9995
No 72
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.00038 Score=72.09 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=74.6
Q ss_pred cccEEEEEEeC-CeEEEEEEEEEecC-----ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhh--
Q 001893 849 GGMYCAILTVN-SSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEA-- 920 (999)
Q Consensus 849 ~G~y~~VL~~~-~~vVgaA~lrv~g~-----d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA-- 920 (999)
.||+-+|++.+ |+++|.|.+..+-. .++|. .|.+++++||+|+|++|+++|.+.+..+|++.++--...++
T Consensus 50 ~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~a 128 (169)
T COG1247 50 DGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLA 128 (169)
T ss_pred CCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcH
Confidence 46787888765 99999999988763 34453 57899999999999999999999999999998875544333
Q ss_pred HHHHHhccCcEEcChhccccccccccee
Q 001893 921 ESIWTDKFGFKKIDPELVCPYTESGVLS 948 (999)
Q Consensus 921 ~~~w~~kfGF~~i~~~e~~~~~~~~~l~ 948 (999)
---..++|||+..+......+.....|+
T Consensus 129 Si~lh~~~GF~~~G~~~~vg~k~g~wld 156 (169)
T COG1247 129 SIALHEKLGFEEVGTFPEVGDKFGRWLD 156 (169)
T ss_pred hHHHHHHCCCEEeccccccccccceEEe
Confidence 2234456999999986555444444443
No 73
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.57 E-value=1.9e-05 Score=65.22 Aligned_cols=43 Identities=42% Similarity=1.265 Sum_probs=35.4
Q ss_pred ccccccC---CCCeecccCCCCcCCcccccCC----CCCCCCccccCccc
Q 001893 606 LCTICAD---GGNLLPCDGCPRAFHKECASLS----SIPQGDWYCKYCQN 648 (999)
Q Consensus 606 ~C~VC~d---gG~Ll~CD~CprafH~~CL~l~----~vP~G~W~Cp~C~~ 648 (999)
+|.+|+. .++++.|+.|.+.||..|+++. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4788886 6779999999999999999854 34456999999973
No 74
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.52 E-value=0.00053 Score=72.55 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=61.2
Q ss_pred ccEEEEEEeCC--eEEEEEEEEEec-------------------------------------CceEEeeeeeeecCCcCC
Q 001893 850 GMYCAILTVNS--SVVSAGILRVFG-------------------------------------QEVAELPLVATSKINHGK 890 (999)
Q Consensus 850 G~y~~VL~~~~--~vVgaA~lrv~g-------------------------------------~d~AEIp~VAT~~~~Rgq 890 (999)
....+++..++ +|+||+-+-.-| -.-+.|-||||+|++|++
T Consensus 26 ~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~~ 105 (196)
T PF13718_consen 26 NHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQRM 105 (196)
T ss_dssp TEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-SS
T ss_pred cceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhcC
Confidence 34556777777 899998887766 236789999999999999
Q ss_pred ChhHHHHHHHHHHh-------------------------hhcCceEEEEc--chhhhHHHHHhccCcEEcCh
Q 001893 891 GYFQLLFACIEKLL-------------------------SFLRVKSIVLP--AAEEAESIWTDKFGFKKIDP 935 (999)
Q Consensus 891 G~gr~L~~~IE~~l-------------------------~~lgV~~LvLp--A~~eA~~~w~~kfGF~~i~~ 935 (999)
|||++|++.+++.+ +..+|..|-.. +.++...||.+ .||.++--
T Consensus 106 G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k-~gf~pv~l 176 (196)
T PF13718_consen 106 GYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQK-NGFVPVYL 176 (196)
T ss_dssp SHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHC-TT-EEEEE
T ss_pred CHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHH-CCcEEEEE
Confidence 99999999999999 46677776554 55888999999 99998743
No 75
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00258 SAND SAND domain.
Probab=97.44 E-value=8e-05 Score=66.97 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=51.7
Q ss_pred EEEe-eCcEEeecceecCCCeeecCCC-ceecccccccccCcCCCCCCcceEEccCCcchhHhhh
Q 001893 528 VGYY-ACGQKLLEGYKNGLGIICHCCN-SEVSPSQFEAHAGWSSRRKPYAHIYTSNGVSLHQLAI 590 (999)
Q Consensus 528 V~Y~-~~Gq~ll~G~k~g~GI~C~cC~-~~~SPS~FE~HAG~~srRkPy~~I~~s~G~SL~dLa~ 590 (999)
|++- +.|.++++-+++|...+|+.++ +|+||++||.+||+...++|..+|+. +|++|..|..
T Consensus 5 V~CG~~~g~L~~~kf~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~ 68 (73)
T smart00258 5 VTCGTVKGILYKKKFKCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLME 68 (73)
T ss_pred eeeCCeeeeeeHhhhhcCcccCCccCCCEEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHH
Confidence 4443 4677788888887777888887 89999999999999999999999966 9999998875
No 77
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.37 E-value=6.4e-05 Score=83.11 Aligned_cols=42 Identities=38% Similarity=1.094 Sum_probs=38.2
Q ss_pred ccccccCCCCeecccC--CC-CcCCcccccCCCCCCCCccccCccc
Q 001893 606 LCTICADGGNLLPCDG--CP-RAFHKECASLSSIPQGDWYCKYCQN 648 (999)
Q Consensus 606 ~C~VC~dgG~Ll~CD~--Cp-rafH~~CL~l~~vP~G~W~Cp~C~~ 648 (999)
+|. |...|+|+-||. |+ .-||+.|++|...|.|.|||+.|+.
T Consensus 223 ~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 223 ICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred Eec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 455 668899999998 99 9999999999999999999999985
No 78
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.32 E-value=0.00042 Score=71.41 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=69.0
Q ss_pred EEEEEE--eCCeEEEEEEEEEecC--ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhc
Q 001893 852 YCAILT--VNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDK 927 (999)
Q Consensus 852 y~~VL~--~~~~vVgaA~lrv~g~--d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~k 927 (999)
.+++|. .+.+|||-++|-.+.. ..--+..|.|.+.+||+|+|+.||+.+|..++..|++.+.|.+.++ ..||++
T Consensus 56 ~sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe~- 133 (225)
T KOG3397|consen 56 MSLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYES- 133 (225)
T ss_pred eeeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhhh-
Confidence 455664 4467777777755442 4556778999999999999999999999999999999999998865 579999
Q ss_pred cCcEEcChhccc
Q 001893 928 FGFKKIDPELVC 939 (999)
Q Consensus 928 fGF~~i~~~e~~ 939 (999)
+||+.-+.-+..
T Consensus 134 lGYe~c~Pi~~~ 145 (225)
T KOG3397|consen 134 LGYEKCDPIVHS 145 (225)
T ss_pred hcccccCceecc
Confidence 999987765543
No 79
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.04 E-value=0.00017 Score=85.97 Aligned_cols=107 Identities=25% Similarity=0.535 Sum_probs=64.3
Q ss_pred cccccccC---CCCeecccCCCCcCCccccc--CCCCCCCCccccCcccccchhhhccccccccccCcccccCchhhhhh
Q 001893 605 DLCTICAD---GGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITK 679 (999)
Q Consensus 605 d~C~VC~d---gG~Ll~CD~CprafH~~CL~--l~~vP~G~W~Cp~C~~~~~~ek~v~~n~~a~a~Gr~sGvds~eqi~k 679 (999)
-.|..|+. ...+++|+.|+-+||-+|.. ...++.|.|+|+.|...-+. +....|- ..+... -..
T Consensus 69 rvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc--------~~~lpg~--s~~~~~-~~~ 137 (694)
T KOG4443|consen 69 RVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQC--------DSTLPGL--SLDLQE-GYL 137 (694)
T ss_pred eeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhc--------ccccccc--chhhhc-cCc
Confidence 35666664 44599999999999999995 67899999999998753221 1111120 000000 000
Q ss_pred hhhhhhcccccccCccccccCCCCCCCCCCCCceecCCCCCCccCcccccc
Q 001893 680 RCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK 730 (999)
Q Consensus 680 Rc~R~vk~~~~e~~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p 730 (999)
.|+-+. ...+|.+|...... -+.-.++.|++|.+|-|..|-.-
T Consensus 138 ~~~~c~-----s~~~cPvc~~~Y~~---~e~~~~~~c~~c~rwsh~~c~~~ 180 (694)
T KOG4443|consen 138 QCAPCA-----SLSYCPVCLIVYQD---SESLPMVCCSICQRWSHGGCDGI 180 (694)
T ss_pred cccccc-----ccccCchHHHhhhh---ccchhhHHHHHhcccccCCCCcc
Confidence 111111 12347777653211 12345699999999999999764
No 80
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.0077 Score=61.37 Aligned_cols=123 Identities=17% Similarity=0.153 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccccEEEEEEe-CCeEEEEEEEEEe-----cCceEEe
Q 001893 805 ETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-NSSVVSAGILRVF-----GQEVAEL 878 (999)
Q Consensus 805 E~~~~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G~y~~VL~~-~~~vVgaA~lrv~-----g~d~AEI 878 (999)
+.-..|=.-++.|.++=+|.+- |..+|..+. |.+..|.-.+-+.++. +.+|+|.|.+..+ +.+.--|
T Consensus 15 ~~i~rLikela~Fek~~~~v~~--te~~l~~~~-----F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYl 87 (163)
T KOG3216|consen 15 EDILRLIKELAEFEKLEDQVEA--TEENLARDG-----FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYL 87 (163)
T ss_pred HHHHHHHHHHHHHHHhccchhh--chhhhhhhh-----ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEEE
Confidence 3444555556677777666432 333333321 2223333333333333 8899999998763 3466778
Q ss_pred eeeeeecCCcCCChhHHHHHHHHHHhhhcCceEE---EEcchhhhHHHHHhccCcEEcCh
Q 001893 879 PLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI---VLPAAEEAESIWTDKFGFKKIDP 935 (999)
Q Consensus 879 p~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~L---vLpA~~eA~~~w~~kfGF~~i~~ 935 (999)
-=+.|+++|||+|+|+.|++.+-+.+..+|+.++ +++--.-|+.+|++ .|++..+.
T Consensus 88 eDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k-~gaq~l~~ 146 (163)
T KOG3216|consen 88 EDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEK-VGAQDLKE 146 (163)
T ss_pred EeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHH-hCccccce
Confidence 8899999999999999999999999999998875 55666888999999 99988766
No 81
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.00 E-value=0.00026 Score=76.41 Aligned_cols=45 Identities=40% Similarity=1.103 Sum_probs=38.2
Q ss_pred ccccccccc--CCCCeecccC--CCC-cCCcccccCCCCCCCCccccCccc
Q 001893 603 NDDLCTICA--DGGNLLPCDG--CPR-AFHKECASLSSIPQGDWYCKYCQN 648 (999)
Q Consensus 603 ndd~C~VC~--dgG~Ll~CD~--Cpr-afH~~CL~l~~vP~G~W~Cp~C~~ 648 (999)
+.-+| .|. ..|+|+-||+ |.+ -||+.|+++...|.|.|||+.|+.
T Consensus 220 e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 220 EELYC-FCQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred ceeEE-EecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 34456 365 4699999998 986 899999999999999999999974
No 82
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.99 E-value=0.00029 Score=84.82 Aligned_cols=47 Identities=36% Similarity=0.911 Sum_probs=39.1
Q ss_pred ccccccccccCC---CCeecccCCCCc-CCccccc--CCCCCCCCccccCccc
Q 001893 602 DNDDLCTICADG---GNLLPCDGCPRA-FHKECAS--LSSIPQGDWYCKYCQN 648 (999)
Q Consensus 602 ~ndd~C~VC~dg---G~Ll~CD~Cpra-fH~~CL~--l~~vP~G~W~Cp~C~~ 648 (999)
.....|.||.-. ..||+||.|..+ ||.+||+ +.++|-++|||+.|.-
T Consensus 213 ~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 213 QEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 344669999843 349999999998 9999996 5679999999999974
No 83
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.96 E-value=0.00029 Score=78.01 Aligned_cols=37 Identities=38% Similarity=0.992 Sum_probs=32.2
Q ss_pred CCCceecCCC--CC-CccCccccccccCCcccCCCCCcceecCCchh
Q 001893 709 GPRTILLCDQ--CE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (999)
Q Consensus 709 ~~~tLL~CDq--Cd-raYHv~CL~p~~~~~LkelP~g~WfC~~~C~~ 752 (999)
..+.|+-||. |+ .|||..|+ .|+..|.|+|||+ .|..
T Consensus 228 syg~Mi~CDn~~C~~eWFH~~CV------GL~~~PkgkWyC~-~C~~ 267 (274)
T KOG1973|consen 228 SYGKMIGCDNPGCPIEWFHFTCV------GLKTKPKGKWYCP-RCKA 267 (274)
T ss_pred ccccccccCCCCCCcceEEEecc------ccccCCCCcccch-hhhh
Confidence 4578999997 99 99999999 6788999999995 8853
No 84
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=96.94 E-value=0.0001 Score=67.72 Aligned_cols=63 Identities=27% Similarity=0.340 Sum_probs=47.3
Q ss_pred eEEEe-eCcEEeecce-ecCCCeeecCCC-ceecccccccccCcCCCCCCcceEEccCCcchhHhhh
Q 001893 527 EVGYY-ACGQKLLEGY-KNGLGIICHCCN-SEVSPSQFEAHAGWSSRRKPYAHIYTSNGVSLHQLAI 590 (999)
Q Consensus 527 ~V~Y~-~~Gq~ll~G~-k~g~GI~C~cC~-~~~SPS~FE~HAG~~srRkPy~~I~~s~G~SL~dLa~ 590 (999)
+|++- ..|..+++-+ ..+..-.|+.+. .|+||++||.|+|+.+.++|..+|++ +|.+|..+..
T Consensus 12 pVtCG~~~G~L~~~k~~~~g~~~kCI~~~g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~ 77 (82)
T PF01342_consen 12 PVTCGDVKGTLYKKKFVKQGICGKCIQCEGRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIE 77 (82)
T ss_dssp EEEETTEEEEEEHHHH-TTGTTSS-EEETTEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHH
T ss_pred eeEeCCeEEEEEHHHhhcccccCceEeeCCcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHh
Confidence 45554 4566776666 555556676655 89999999999999999999999988 9999998865
No 85
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.005 Score=60.92 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=73.4
Q ss_pred cccEEEEEEeCC--eEEEEEEEEEec----CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhh-cCceEEEEcchhhhH
Q 001893 849 GGMYCAILTVNS--SVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEEAE 921 (999)
Q Consensus 849 ~G~y~~VL~~~~--~vVgaA~lrv~g----~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~-lgV~~LvLpA~~eA~ 921 (999)
.+.|.++...++ ++||.+.+.... .+.+|+...- .+.|+|+|++...+.++.+.+-. +++++|++-+.+.++
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 356666666554 999999998765 5678887766 99999999999999999998666 999999999998887
Q ss_pred HHHH--hccCcEEcChhcccccc
Q 001893 922 SIWT--DKFGFKKIDPELVCPYT 942 (999)
Q Consensus 922 ~~w~--~kfGF~~i~~~e~~~~~ 942 (999)
..+. +|+||+..+.-....+.
T Consensus 143 ~S~rv~ek~Gf~~eg~~~~~~~~ 165 (187)
T COG1670 143 ASIRVYEKLGFRLEGELRQHEFI 165 (187)
T ss_pred HHHHHHHHcCChhhhhhhhceee
Confidence 7666 56999998865554333
No 86
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.90 E-value=0.00042 Score=74.93 Aligned_cols=45 Identities=40% Similarity=1.111 Sum_probs=37.1
Q ss_pred CccccccCCCCCCCCCCCCceecCC--CCCC-ccCccccccccCCcccCCCCCcceecCCchh
Q 001893 693 SGCLLCRGCDFSKSGFGPRTILLCD--QCER-EFHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (999)
Q Consensus 693 ~~C~vC~~~d~s~sg~~~~tLL~CD--qCdr-aYHv~CL~p~~~~~LkelP~g~WfC~~~C~~ 752 (999)
.+| +|.+. ..+.|+-|| .|++ |||+.|+ +|++.|+|.||| ++|..
T Consensus 222 lYC-fCqqv-------SyGqMVaCDn~nCkrEWFH~~CV------GLk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 222 LYC-FCQQV-------SYGQMVACDNANCKREWFHLECV------GLKEPPKGKWYC-PECKK 269 (271)
T ss_pred eEE-Eeccc-------ccccceecCCCCCchhheecccc------ccCCCCCCcEeC-HHhHh
Confidence 456 48775 357899999 7884 8999999 689999999999 79964
No 87
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.73 E-value=0.0026 Score=59.55 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=60.6
Q ss_pred EEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHH--hccCcEE
Q 001893 855 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT--DKFGFKK 932 (999)
Q Consensus 855 VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~--~kfGF~~ 932 (999)
||--+|.+|+=.. .+..+||+.-+|.|+|||||+.+.++..+.+.|..+|+. +.+.+.++++...+ +.+||..
T Consensus 3 llgpeG~PVSW~l----mdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r~~~~lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWSL----MDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQRLSKSLGFIF 77 (89)
T ss_pred ccCCCCCEeEEEE----ecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHHHHHHCCCee
Confidence 3445677877444 567899999999999999999999999999999999986 45667766666665 4599998
Q ss_pred cC
Q 001893 933 ID 934 (999)
Q Consensus 933 i~ 934 (999)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 76
No 88
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.71 E-value=0.0042 Score=68.82 Aligned_cols=111 Identities=21% Similarity=0.235 Sum_probs=84.8
Q ss_pred EEEEEE-eCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCc
Q 001893 852 YCAILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 930 (999)
Q Consensus 852 y~~VL~-~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF 930 (999)
|+++++ .++++|+|+++ .| --|.-|||++.+||-|+.-.|+.+|.+++-++|...||+-+-++...++.. +||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aG---nvikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AG---NVIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--cc---ceeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCc
Confidence 445555 55999999995 45 358899999999999999999999999999999999999999999999999 999
Q ss_pred EEcChhcc-cccccccceeccCCchhhh-----hhccCC-Ccccchhhhhhcccc
Q 001893 931 KKIDPELV-CPYTESGVLSWSPSREHLC-----YRKGSL-PVELGVVVLTQRNAL 978 (999)
Q Consensus 931 ~~i~~~e~-~~~~~~~~l~~~~~~~~~~-----~~~~~~-p~~~~~~~~~~~~~~ 978 (999)
..+..-+- .-+.. ++++++. .+++.. +---++.| |||.
T Consensus 111 ~~i~~~~~~ivlmE-------Ns~trl~~y~~~L~k~r~~gkkIgaIV---MNAN 155 (352)
T COG3053 111 SEIASAENVIVLME-------NSATRLKDYLSSLKKLRHPGKKIGAIV---MNAN 155 (352)
T ss_pred eEeeccCceEEEee-------cCchhHHHHHHHHHHhccCCCeeEEEE---EeCC
Confidence 99987432 12221 3444443 233333 44456777 8884
No 89
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.49 E-value=0.017 Score=63.99 Aligned_cols=84 Identities=15% Similarity=0.001 Sum_probs=57.9
Q ss_pred cccEEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhcc
Q 001893 849 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKF 928 (999)
Q Consensus 849 ~G~y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kf 928 (999)
.||= +++..+++||+.|.-.....+.+||- |+|+++|||||+++++-.++...+...|+...|=-. ..+-----+|+
T Consensus 164 ~G~G-f~i~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~-N~~S~~lA~kL 240 (265)
T PF12746_consen 164 NGFG-FCILHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCH-NLASIALAEKL 240 (265)
T ss_dssp H--E-EEEEETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EES-SHHHHHHHHHC
T ss_pred cCcE-EEEEECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCC-CHHHHHHHHHc
Confidence 4543 44456889999777666677889986 799999999999999999999999999999988542 22222222579
Q ss_pred CcEEcCh
Q 001893 929 GFKKIDP 935 (999)
Q Consensus 929 GF~~i~~ 935 (999)
||+...+
T Consensus 241 Gf~~~~~ 247 (265)
T PF12746_consen 241 GFHFDFE 247 (265)
T ss_dssp T--EEEE
T ss_pred CCcccce
Confidence 9987643
No 90
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.38 E-value=0.024 Score=56.36 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=57.4
Q ss_pred EEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch------hhhHHHHHhc
Q 001893 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA------EEAESIWTDK 927 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~------~eA~~~w~~k 927 (999)
+...-|+.++|++.+.+.+ +-++|--+.|++.=||+|+|..|++.+.+.+.. |....+... ..+...+...
T Consensus 41 ~aArFNdRlLgAv~v~~~~-~~~~L~~l~VRevTRrRGVG~yLlee~~rq~p~--i~~w~l~~~~~~~~~~~~~~~Fm~a 117 (128)
T PF12568_consen 41 FAARFNDRLLGAVKVTISG-QQAELSDLCVREVTRRRGVGLYLLEEVLRQLPD--IKHWWLADEGVEPQDRAVMAAFMQA 117 (128)
T ss_dssp EEEEETTEEEEEEEEEEET-TEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS-S----EEEE--TT-S--THHHHHHHHHH
T ss_pred EEEEechheeeeEEEEEcC-cceEEeeEEEeeccccccHHHHHHHHHHHHCCC--CcEEEEecCCCcccchHHHHHHHHH
Confidence 5667899999999999987 579999999999999999999999999999954 455444433 2445556666
Q ss_pred cCcEEcCh
Q 001893 928 FGFKKIDP 935 (999)
Q Consensus 928 fGF~~i~~ 935 (999)
+||...++
T Consensus 118 ~GF~~~~~ 125 (128)
T PF12568_consen 118 CGFSAQSD 125 (128)
T ss_dssp HT-EE-SS
T ss_pred cCccccCC
Confidence 99987654
No 91
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.37 E-value=0.0012 Score=76.59 Aligned_cols=47 Identities=34% Similarity=0.946 Sum_probs=39.9
Q ss_pred CccccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCC----cceecCCc
Q 001893 693 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKG----KWFCCMDC 750 (999)
Q Consensus 693 ~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g----~WfC~~~C 750 (999)
-.|.+|++.. +...+++||.|...||++||+| ||+.+|+. .|.| ..|
T Consensus 545 ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sEC 595 (707)
T KOG0957|consen 545 YSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SEC 595 (707)
T ss_pred eeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-ccc
Confidence 3599999864 5567899999999999999998 78888864 4999 789
No 92
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.29 E-value=0.0013 Score=76.35 Aligned_cols=125 Identities=27% Similarity=0.581 Sum_probs=74.5
Q ss_pred ccccccccc-----CCCCeecccCCCCcCCcccccCC---CCCC-------CCccccCcccccc-hhhhccccccc----
Q 001893 603 NDDLCTICA-----DGGNLLPCDGCPRAFHKECASLS---SIPQ-------GDWYCKYCQNMFE-RKRFLQHDANA---- 662 (999)
Q Consensus 603 ndd~C~VC~-----dgG~Ll~CD~CprafH~~CL~l~---~vP~-------G~W~Cp~C~~~~~-~ek~v~~n~~a---- 662 (999)
.-.+|.||. +.|+++-||.|+-..|..|.+.. ++|. ..|||.-|...+. +.-.+.++...
T Consensus 118 k~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKe 197 (707)
T KOG0957|consen 118 KAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKE 197 (707)
T ss_pred cceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcccc
Confidence 334899998 46889999999999999999732 3333 4699999987643 11111111110
Q ss_pred ---------cccCcccccCchhhhhhhhhhhhccccc---ccCccccccCCCCCCCCCCCCceecCC--CCCCccCcccc
Q 001893 663 ---------VEAGRVSGVDSVEQITKRCIRIVKNLEA---ELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCL 728 (999)
Q Consensus 663 ---------~a~Gr~sGvds~eqi~kRc~R~vk~~~~---e~~~C~vC~~~d~s~sg~~~~tLL~CD--qCdraYHv~CL 728 (999)
+.+--+.|+. ..++.++|.-....++. ....|..|...-|.+. +..+.|| .|..+||+.|.
T Consensus 198 tDigrWvH~iCALYvpGVa-fg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARt----Gvci~CdaGMCk~YfHVTCA 272 (707)
T KOG0957|consen 198 TDIGRWVHAICALYVPGVA-FGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFART----GVCIRCDAGMCKEYFHVTCA 272 (707)
T ss_pred cchhhHHHHHHHhhcCccc-cccccccccccHHHhhhhhhccchhccccchhhhhc----ceeeeccchhhhhhhhhhHH
Confidence 0111111111 22233333222222221 1123999998766644 4678898 89999999999
Q ss_pred cccc
Q 001893 729 KKHK 732 (999)
Q Consensus 729 ~p~~ 732 (999)
+..+
T Consensus 273 Qk~G 276 (707)
T KOG0957|consen 273 QKLG 276 (707)
T ss_pred hhhc
Confidence 8755
No 93
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=96.19 E-value=0.013 Score=60.13 Aligned_cols=84 Identities=14% Similarity=0.191 Sum_probs=68.0
Q ss_pred EEEEE-eCCeEEEEEEEEEec-----CceEEeeeeeeecCCcCCChhHHHHHHHH-HHhhhcCceEEEEcch---hhhHH
Q 001893 853 CAILT-VNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIE-KLLSFLRVKSIVLPAA---EEAES 922 (999)
Q Consensus 853 ~~VL~-~~~~vVgaA~lrv~g-----~d~AEIp~VAT~~~~RgqG~gr~L~~~IE-~~l~~lgV~~LvLpA~---~eA~~ 922 (999)
.+|.+ .+|+|||+....... ..-.+|..+||...||+.|+++.||..-. .+.-..+.+.+-|.++ ..|+.
T Consensus 43 SyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~ 122 (193)
T KOG3235|consen 43 SYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALH 122 (193)
T ss_pred eEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHH
Confidence 46777 679999999887765 12578999999999999999999997644 4566677888999887 45788
Q ss_pred HHHhccCcEEcChh
Q 001893 923 IWTDKFGFKKIDPE 936 (999)
Q Consensus 923 ~w~~kfGF~~i~~~ 936 (999)
+|++.+||...+-+
T Consensus 123 LY~~tl~F~v~eve 136 (193)
T KOG3235|consen 123 LYKNTLGFVVCEVE 136 (193)
T ss_pred hhhhccceEEeecc
Confidence 99999999988654
No 94
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.11 E-value=0.0083 Score=50.85 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=39.5
Q ss_pred eeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCc
Q 001893 881 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 930 (999)
Q Consensus 881 VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF 930 (999)
++|+++|||+|+|+.|+..+++.++..|+. ....+..+|.. +||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~-~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEK-NGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHh-cCC
Confidence 999999999999999999999999998887 55667778887 888
No 95
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=96.06 E-value=0.034 Score=50.54 Aligned_cols=58 Identities=12% Similarity=0.027 Sum_probs=49.6
Q ss_pred EEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEE
Q 001893 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI 912 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~L 912 (999)
+.+..+|+.+|...++. ..+.-.|--.-|.+++||||+|+.|++++.+.++..|.+-+
T Consensus 2 F~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV 59 (78)
T ss_dssp EEEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 34667788999999977 66899999999999999999999999999999999987644
No 96
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=96.05 E-value=0.016 Score=60.90 Aligned_cols=85 Identities=19% Similarity=0.188 Sum_probs=63.6
Q ss_pred ccEEEEEEeCC-eEEEEEEEEEecC---ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch---hhhHH
Q 001893 850 GMYCAILTVNS-SVVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAES 922 (999)
Q Consensus 850 G~y~~VL~~~~-~vVgaA~lrv~g~---d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~ 922 (999)
+-..+++..++ ++||...+|..-+ .++-+==|-+.+.|||+|+|+.||+.+|.++...+.+.++|-+- .-|.+
T Consensus 91 ~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~ 170 (202)
T KOG2488|consen 91 KLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALG 170 (202)
T ss_pred cceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHH
Confidence 33335555555 8999999987542 23333334467789999999999999999999988887777654 56788
Q ss_pred HHHhccCcEEcCh
Q 001893 923 IWTDKFGFKKIDP 935 (999)
Q Consensus 923 ~w~~kfGF~~i~~ 935 (999)
||.+ +||-+...
T Consensus 171 Fy~~-~gf~~~~~ 182 (202)
T KOG2488|consen 171 FYHR-LGFVVDEE 182 (202)
T ss_pred HHHH-cCcccCCC
Confidence 9998 99988765
No 97
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.91 E-value=0.0036 Score=63.49 Aligned_cols=26 Identities=42% Similarity=1.106 Sum_probs=23.3
Q ss_pred ccCccccccccCCcccCCCCCcceecCCchh
Q 001893 722 EFHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (999)
Q Consensus 722 aYHv~CL~p~~~~~LkelP~g~WfC~~~C~~ 752 (999)
.||+.||+| +|+++|+|+|+| +.|..
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~ 26 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEV 26 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcC
Confidence 599999998 899999999999 68964
No 98
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=95.53 E-value=0.011 Score=62.26 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=52.2
Q ss_pred eEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcC-ceEEEEcch---hhhHHHHHhccCcEEcCh
Q 001893 875 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAA---EEAESIWTDKFGFKKIDP 935 (999)
Q Consensus 875 ~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lg-V~~LvLpA~---~eA~~~w~~kfGF~~i~~ 935 (999)
+.-|-.++|.+.||.+|+|+.|++.+.+.+...+ ++++.|.++ ..|+.+|++ +||+.+..
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~-~gF~~~~~ 152 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEK-RGFEIVER 152 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHh-cCceEeec
Confidence 5779999999999999999999999999999988 777777655 677888888 99999854
No 99
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.53 E-value=0.0077 Score=76.67 Aligned_cols=53 Identities=26% Similarity=0.736 Sum_probs=42.3
Q ss_pred ccCccccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceecCCchhhH
Q 001893 691 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRIN 754 (999)
Q Consensus 691 e~~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~~~C~~I~ 754 (999)
+...|.+|.+++- .+.+.+++||.|+.++|.+|.. .+-+|+|.|+| ..|-...
T Consensus 218 ~D~~C~iC~~~~~----~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~ 270 (1051)
T KOG0955|consen 218 EDAVCCICLDGEC----QNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSP 270 (1051)
T ss_pred CCccceeeccccc----CCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCc
Confidence 3456999998863 3457899999999999999995 45678999999 8885433
No 100
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.50 E-value=0.016 Score=71.80 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=48.8
Q ss_pred EEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEc--chhhhHHHHHhccCcEEcCh
Q 001893 876 AELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP--AAEEAESIWTDKFGFKKIDP 935 (999)
Q Consensus 876 AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLp--A~~eA~~~w~~kfGF~~i~~ 935 (999)
+.|-||||+|++|++|||++|++.+.++++ .|+..+-.. +.++...||.+ .||.++--
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~r-nGF~pVhl 591 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLR-NGFVPVHL 591 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHH-cCeEEEEe
Confidence 778899999999999999999999999996 445544443 56889999999 99998743
No 101
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.39 E-value=0.0073 Score=72.57 Aligned_cols=51 Identities=29% Similarity=0.983 Sum_probs=43.5
Q ss_pred ccCccccccCCCCCCCCCCCCceecCC--CCCCccCccccccccCCcccCCCCCcceecCCchh
Q 001893 691 ELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (999)
Q Consensus 691 e~~~C~vC~~~d~s~sg~~~~tLL~CD--qCdraYHv~CL~p~~~~~LkelP~g~WfC~~~C~~ 752 (999)
.+++|.+|.+ ..|.-++.|+.|| .|..+.|..|. .+.++|.|.||| ..|..
T Consensus 4 MVGGCCVCSD----ErGWaeNPLVYCDG~nCsVAVHQaCY------GIvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 4 MVGGCCVCSD----ERGWAENPLVYCDGHNCSVAVHQACY------GIVQVPTGPWFC-RKCES 56 (900)
T ss_pred cccceeeecC----cCCCccCceeeecCCCceeeeehhcc------eeEecCCCchhh-hhhhh
Confidence 4578999975 4566789999999 89999999998 567899999999 88864
No 102
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=95.35 E-value=0.041 Score=52.66 Aligned_cols=59 Identities=17% Similarity=0.083 Sum_probs=54.2
Q ss_pred EEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEE
Q 001893 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI 912 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~L 912 (999)
+++..+|+.++.++....+.+..-|.-..|.+++||||+++.|+......+++.|.+-+
T Consensus 18 y~~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kii 76 (99)
T COG2388 18 YVLTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKII 76 (99)
T ss_pred EEEecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEc
Confidence 46788899999999999999999999999999999999999999999999999997543
No 103
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.31 E-value=0.0039 Score=81.83 Aligned_cols=54 Identities=33% Similarity=0.835 Sum_probs=45.9
Q ss_pred ccCccccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceecCCchhhHH
Q 001893 691 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINS 755 (999)
Q Consensus 691 e~~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~~~C~~I~~ 755 (999)
....|.+|+..+ ....|+.|+.|..+||+.|++| .+..+|.++||| +.|..-..
T Consensus 1107 ~~~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~ 1160 (1404)
T KOG1245|consen 1107 VNALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHR 1160 (1404)
T ss_pred chhhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhh
Confidence 345699998653 5678999999999999999998 788999999999 79986665
No 104
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.31 E-value=0.0088 Score=60.76 Aligned_cols=25 Identities=40% Similarity=1.132 Sum_probs=22.5
Q ss_pred cCCccccc--CCCCCCCCccccCcccc
Q 001893 625 AFHKECAS--LSSIPQGDWYCKYCQNM 649 (999)
Q Consensus 625 afH~~CL~--l~~vP~G~W~Cp~C~~~ 649 (999)
+||+.||. ++.+|+|+|+||.|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 59999995 88999999999999853
No 105
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=95.28 E-value=0.013 Score=59.72 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=51.9
Q ss_pred ceEEeeeeeeecCCcCCChhHHHHHH-HHHHhhhcCceEEEEcchhhhHHHHHhccCcEEcCh
Q 001893 874 EVAELPLVATSKINHGKGYFQLLFAC-IEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 935 (999)
Q Consensus 874 d~AEIp~VAT~~~~RgqG~gr~L~~~-IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~ 935 (999)
.-+.|-.+|++|+||.||++..|+.. |..+...-=+.+++|=+-+-.++||++ |||+.+++
T Consensus 100 ~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr-~gFk~vgp 161 (190)
T KOG4144|consen 100 HNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER-FGFKAVGP 161 (190)
T ss_pred cceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh-cCceeecc
Confidence 34788889999999999999999987 554544455678899999999999999 99999998
No 106
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.08 E-value=0.0039 Score=48.99 Aligned_cols=34 Identities=44% Similarity=1.111 Sum_probs=20.6
Q ss_pred CCeecccCCCCcCCcccccCCCCCCC-CccccCcc
Q 001893 614 GNLLPCDGCPRAFHKECASLSSIPQG-DWYCKYCQ 647 (999)
Q Consensus 614 G~Ll~CD~CprafH~~CL~l~~vP~G-~W~Cp~C~ 647 (999)
..|+.|+.|.-+.|..|.++..+|++ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 35899999999999999999998887 89999884
No 107
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=94.84 E-value=0.059 Score=55.35 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=55.7
Q ss_pred CeEEEEEEEEEecC---ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch---hhhHHHHHhccCcEEc
Q 001893 860 SSVVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFGFKKI 933 (999)
Q Consensus 860 ~~vVgaA~lrv~g~---d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w~~kfGF~~i 933 (999)
+++-|...=++-|. .-+++--++|.|+||++|++..||+.||+.....+.-.+.|-++ .-|+.+|++ |||.+.
T Consensus 51 ~~imgyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkk-LGY~~Y 129 (173)
T KOG3234|consen 51 GEIMGYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKK-LGYSVY 129 (173)
T ss_pred CceEEEEeeeccccCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHh-cCceEE
Confidence 44444444444443 34788999999999999999999999999988876666555555 567889999 999875
No 108
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=94.37 E-value=0.05 Score=61.98 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=64.9
Q ss_pred CccccccEEEEEEeCCeEEEEEEEEE----ecC---ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch
Q 001893 845 GQEFGGMYCAILTVNSSVVSAGILRV----FGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA 917 (999)
Q Consensus 845 ~~dF~G~y~~VL~~~~~vVgaA~lrv----~g~---d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~ 917 (999)
.+++.++| |++.+.++++--.+-. ++. ..|-|-.||+.|.|||+|+-|+|+....+..++.|+.-.+|.+.
T Consensus 35 il~~~n~~--vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P~ 112 (389)
T COG4552 35 ILAEPNSY--VIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHPF 112 (389)
T ss_pred hccCCcce--EEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEeccC
Confidence 34555555 5566666654332221 133 35678889999999999999999999999999999998888665
Q ss_pred hhhHHHHHhccCcEEcCh
Q 001893 918 EEAESIWTDKFGFKKIDP 935 (999)
Q Consensus 918 ~eA~~~w~~kfGF~~i~~ 935 (999)
..+||.+ |||..-+.
T Consensus 113 --s~~iYrK-fGye~asn 127 (389)
T COG4552 113 --SGGIYRK-FGYEYASN 127 (389)
T ss_pred --chhhHhh-ccccccce
Confidence 4679998 99988776
No 109
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=93.96 E-value=0.45 Score=52.07 Aligned_cols=131 Identities=15% Similarity=0.079 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccccEEEEEEe-CCeEEEEEEEEEe---------------
Q 001893 808 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-NSSVVSAGILRVF--------------- 871 (999)
Q Consensus 808 ~~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G~y~~VL~~-~~~vVgaA~lrv~--------------- 871 (999)
..+..|..+=++.| ++. -|-++...---+.++...|-..-|.++... ++++||+++|...
T Consensus 17 ~~~~~~~~lR~~VF---v~e-~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~ 92 (241)
T TIGR03694 17 ELLEEAFRLRYQVY---CEE-LGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHC 92 (241)
T ss_pred HHHHHHHHHHHHHH---HHh-cCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHh
Confidence 34566766666666 111 122211100013344556655566555543 5899999999652
Q ss_pred ---------------cCceEEeeeeeeecCCcCC--------C--------------------hhHHHHHHHHHHhhhcC
Q 001893 872 ---------------GQEVAELPLVATSKINHGK--------G--------------------YFQLLFACIEKLLSFLR 908 (999)
Q Consensus 872 ---------------g~d~AEIp~VAT~~~~Rgq--------G--------------------~gr~L~~~IE~~l~~lg 908 (999)
..+++|+-|+|++++||+. | +...|+.++-+.+...|
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~G 172 (241)
T TIGR03694 93 SHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANG 172 (241)
T ss_pred ccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCC
Confidence 1369999999999999974 2 44679999999999999
Q ss_pred ceEEEEcchhhhHHHHHhccCcEEcChhccccccc
Q 001893 909 VKSIVLPAAEEAESIWTDKFGFKKIDPELVCPYTE 943 (999)
Q Consensus 909 V~~LvLpA~~eA~~~w~~kfGF~~i~~~e~~~~~~ 943 (999)
++.++.-+.+....++.+ +||....-..-.+|..
T Consensus 173 i~~~~~v~~~~l~r~l~r-~G~~~~~lG~~~~~~G 206 (241)
T TIGR03694 173 ITHWYAIMEPRLARLLSR-FGIQFRQVGPPVDYHG 206 (241)
T ss_pred CcEEEEEeCHHHHHHHHH-hCCceEEcCCCeeECc
Confidence 999998888888887765 8865544444445554
No 110
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=93.56 E-value=0.018 Score=75.82 Aligned_cols=49 Identities=39% Similarity=0.944 Sum_probs=42.0
Q ss_pred CccccccccccCCC---CeecccCCCCcCCccccc--CCCCCCCCccccCcccc
Q 001893 601 KDNDDLCTICADGG---NLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 649 (999)
Q Consensus 601 ~~ndd~C~VC~dgG---~Ll~CD~CprafH~~CL~--l~~vP~G~W~Cp~C~~~ 649 (999)
......|.+|...+ .++.|+.|...||..|+. +..+|.|+|+||.|+..
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 34567899998543 599999999999999995 78999999999999864
No 111
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=93.24 E-value=0.46 Score=45.31 Aligned_cols=66 Identities=8% Similarity=-0.162 Sum_probs=57.8
Q ss_pred cEEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch
Q 001893 851 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA 917 (999)
Q Consensus 851 ~y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~ 917 (999)
..-++++.+|++||++..-..+ +.+.....+++++|+..+.|..|+..+.+.+.+.|++.+-+-..
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3456778899999999876666 78999999999999999999999999999999999998887655
No 112
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=93.04 E-value=0.041 Score=67.02 Aligned_cols=49 Identities=31% Similarity=0.837 Sum_probs=41.2
Q ss_pred CccccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceecCCchh
Q 001893 693 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (999)
Q Consensus 693 ~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~~~C~~ 752 (999)
-.|.+|+.+| +...+.|++||.|.-..|..|. .+.++|.+.|.| ..|..
T Consensus 272 viCDvCrspD----~e~~neMVfCd~Cn~cVHqaCy------GIle~p~gpWlC-r~Cal 320 (893)
T KOG0954|consen 272 VICDVCRSPD----SEEANEMVFCDKCNICVHQACY------GILEVPEGPWLC-RTCAL 320 (893)
T ss_pred ceeceecCCC----ccccceeEEeccchhHHHHhhh------ceeecCCCCeee-hhccc
Confidence 3499999876 3357889999999999999998 567899999999 77753
No 113
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=92.90 E-value=0.5 Score=49.88 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=59.4
Q ss_pred EEEEEEeCCeEEEEEEEEEec-------CceEEeeeeeeecCCcCCChhHHHHHHHH-HHhhhcCceEEEEcchhhhHHH
Q 001893 852 YCAILTVNSSVVSAGILRVFG-------QEVAELPLVATSKINHGKGYFQLLFACIE-KLLSFLRVKSIVLPAAEEAESI 923 (999)
Q Consensus 852 y~~VL~~~~~vVgaA~lrv~g-------~d~AEIp~VAT~~~~RgqG~gr~L~~~IE-~~l~~lgV~~LvLpA~~eA~~~ 923 (999)
|.+++..-.++|+...+-.+- ..+--+.+.-+.|+|||+|+++ |+..+. +.+.. +-...++-+...+..+
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~-~~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDS-VDDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhcc-CCCceeeecCHHHHHH
Confidence 344444456788877764433 2388888888999999999996 555554 44444 3456777788899999
Q ss_pred HHhccCcEEcCh
Q 001893 924 WTDKFGFKKIDP 935 (999)
Q Consensus 924 w~~kfGF~~i~~ 935 (999)
|.+-|||..++.
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999888877
No 114
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=92.80 E-value=0.044 Score=64.10 Aligned_cols=47 Identities=32% Similarity=0.801 Sum_probs=37.4
Q ss_pred CccccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceecCCc
Q 001893 693 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 750 (999)
Q Consensus 693 ~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~~~C 750 (999)
+.|.+|.+.+. .+.++++.||.|+-+.|..|.. ..-+|+|.|+| ..|
T Consensus 194 ~~C~~c~~t~~----eN~naiVfCdgC~i~VHq~CYG------I~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTHN----ENSNAIVFCDGCEICVHQSCYG------IQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhcccccc----CCcceEEEecCcchhhhhhccc------ceecCcchhhh-hhh
Confidence 34888887652 2457899999999999999984 45679999999 666
No 115
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=92.34 E-value=0.23 Score=51.84 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=56.1
Q ss_pred cEEEEEEeCCeEEEEEEEEEecCc-----eEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHH
Q 001893 851 MYCAILTVNSSVVSAGILRVFGQE-----VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAES 922 (999)
Q Consensus 851 ~y~~VL~~~~~vVgaA~lrv~g~d-----~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~ 922 (999)
+|-+|-+ ++++||...+|-.-.+ ..+|. -+|+|..||+||++.++.-....++.+|++.+.+-+..+++.
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~~ll~~gGHIG-Y~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~A 144 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLNDFLLEEGGHIG-YSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIA 144 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecchHHHhcCCccc-ceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCch
Confidence 5545555 8999999999886533 12222 459999999999999999999999999999999988866654
No 116
>smart00258 SAND SAND domain.
Probab=92.04 E-value=0.1 Score=47.32 Aligned_cols=49 Identities=24% Similarity=0.391 Sum_probs=41.1
Q ss_pred cCeEEeeCCCCCCceecCcccccccccc-ccCCccccccccCCccHHHHHHH
Q 001893 261 DGGILCSCSLCNGCRVIPPSKFEIHACK-QYRRASQYICFENGKSLLEVLRA 311 (999)
Q Consensus 261 ~~GilC~C~~C~~~~v~s~~~FE~HAGs-~~~~p~~~I~LenG~sL~~vl~a 311 (999)
.+|+.+-|-.+++ +-+||.+||.|||. ++|.=-..|.. ||.+|+.+|+.
T Consensus 20 ~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 20 KCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 4589999999987 99999999999994 67776777765 68999998875
No 117
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=91.59 E-value=1.2 Score=46.88 Aligned_cols=120 Identities=19% Similarity=0.161 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccc-cEEEEEEeCCeEEEEEEEEEec--------------
Q 001893 808 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGG-MYCAILTVNSSVVSAGILRVFG-------------- 872 (999)
Q Consensus 808 ~~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G-~y~~VL~~~~~vVgaA~lrv~g-------------- 872 (999)
..|.+....=|+.| +|. =|=| +| ..-|.++-..|-.. .| ++...+|+++|+++|....
T Consensus 8 ~~l~~~~rlR~~vF---v~r-lgW~-v~-~~dg~E~DqyD~~~~~y-lv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~ 80 (182)
T PF00765_consen 8 RLLEEMFRLRHRVF---VDR-LGWD-VP-CEDGMEIDQYDDPDAVY-LVALDDGRVVGCARLLPTTGPYMLSDVFPHLLP 80 (182)
T ss_dssp HHHHHHHHHHHHHH---TTC-SCCC-HH-CCTSEE--TTGCTT-EE-EEEEETTEEEEEEEEEETTS--HHHHCTGGGHT
T ss_pred HHHHHHHHHHHHHH---HHh-hCCC-Cc-CCCCcEeeecCCCCCeE-EEEEECCEEEEEeeeccCCCcchhhhHHHHHhC
Confidence 44555555556667 221 1223 22 12244555565443 55 5555669999999997644
Q ss_pred -------CceEEeeeeeeecCCcC------CChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEEcCh
Q 001893 873 -------QEVAELPLVATSKINHG------KGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 935 (999)
Q Consensus 873 -------~d~AEIp~VAT~~~~Rg------qG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~ 935 (999)
.+++|+-|++++++.++ .-+...|+.++-+.+.+.|++.++.-+....+.++.+ +||....-
T Consensus 81 ~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~r-~G~~~~~l 155 (182)
T PF00765_consen 81 DGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDPAMERILRR-AGWPVRRL 155 (182)
T ss_dssp TS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHHH-CT-EEEES
T ss_pred CCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHHH-cCCceEEC
Confidence 58999999999987432 2367899999999999999999998888878888887 99876433
No 118
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=90.78 E-value=0.078 Score=62.53 Aligned_cols=44 Identities=32% Similarity=0.955 Sum_probs=35.2
Q ss_pred ccccccCC-----CCeecccCCCCcCCccccc------CCCCCCCCccccCcccc
Q 001893 606 LCTICADG-----GNLLPCDGCPRAFHKECAS------LSSIPQGDWYCKYCQNM 649 (999)
Q Consensus 606 ~C~VC~dg-----G~Ll~CD~CprafH~~CL~------l~~vP~G~W~Cp~C~~~ 649 (999)
.|.+|..+ ..|+.|++|..-||+.|+. +..-+...|||..|...
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 39998743 3699999999999999994 22336789999999864
No 119
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=90.41 E-value=0.24 Score=58.32 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=46.4
Q ss_pred ecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEEcCh
Q 001893 884 SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 935 (999)
Q Consensus 884 ~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~ 935 (999)
...+|.+|||+.||+..|+.|++.+.++|.+=++..+..-|.+ |||...++
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k-~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRK-LGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHH-hCccccCC
Confidence 4689999999999999999999999999999999888888886 99998775
No 120
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=89.72 E-value=0.051 Score=42.82 Aligned_cols=33 Identities=36% Similarity=1.110 Sum_probs=17.6
Q ss_pred CceecCCCCCCccCccccccccCCcccCCCCC-cceecCCc
Q 001893 711 RTILLCDQCEREFHVGCLKKHKMADLRELPKG-KWFCCMDC 750 (999)
Q Consensus 711 ~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g-~WfC~~~C 750 (999)
+.||.|+.|.-..|..|.. +..+|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYG------v~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG------VSEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCC------cccCCCCCcEEC-CcC
Confidence 4699999999999999984 3445555 7999 444
No 121
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=89.07 E-value=2.2 Score=45.75 Aligned_cols=123 Identities=17% Similarity=0.109 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccc-cEEEEEEeCCeEEEEEEEEEe--------------
Q 001893 807 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGG-MYCAILTVNSSVVSAGILRVF-------------- 871 (999)
Q Consensus 807 ~~~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G-~y~~VL~~~~~vVgaA~lrv~-------------- 871 (999)
...+.++...=++.|- +. =|=++ +. --|.++..+|... .|-+....+|++||+++|-..
T Consensus 15 ~~~l~~~~rLR~~VF~---~e-lgW~~-~~-~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~ 88 (207)
T PRK13834 15 ASLLKQMHRLRARVFG---GR-LGWDV-SI-TDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLL 88 (207)
T ss_pred HHHHHHHHHHHHHHhc---cc-cCCCC-CC-CCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhc
Confidence 3456777777777772 11 12222 11 1233445565544 454445567899999988322
Q ss_pred -------cCceEEeeeeeeecCCc---CCC----hhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcE--EcCh
Q 001893 872 -------GQEVAELPLVATSKINH---GKG----YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFK--KIDP 935 (999)
Q Consensus 872 -------g~d~AEIp~VAT~~~~R---gqG----~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~--~i~~ 935 (999)
..+++|+-+++++++++ +.+ +...|+.++-+.+...|++.++.-..+....++.+ +||. .+++
T Consensus 89 ~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r-~G~~~~~lG~ 167 (207)
T PRK13834 89 PAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILAR-AGWPMQRLGE 167 (207)
T ss_pred CCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH-cCCCeEECCC
Confidence 15799999999999853 222 55789999999999999999987777767777765 8865 4444
Q ss_pred h
Q 001893 936 E 936 (999)
Q Consensus 936 ~ 936 (999)
.
T Consensus 168 ~ 168 (207)
T PRK13834 168 P 168 (207)
T ss_pred C
Confidence 3
No 122
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=87.68 E-value=2.2 Score=42.49 Aligned_cols=85 Identities=12% Similarity=0.040 Sum_probs=61.2
Q ss_pred EEEEEeCCeEEEEEEEEE--ec-----CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHH
Q 001893 853 CAILTVNSSVVSAGILRV--FG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 925 (999)
Q Consensus 853 ~~VL~~~~~vVgaA~lrv--~g-----~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~ 925 (999)
.+.+..+|.+||.+.+-- +. -.++|+..|+ .|||+|+||+....|-.+...+ ...++++--..|.++|+
T Consensus 39 ~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~---k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 39 AWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVR---KHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK 114 (143)
T ss_pred eeEEEECCceeeeeeeecccCCCCcccccchheEeee---hhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH
Confidence 345667889999887632 11 2466666554 7999999999999999998776 67888999999999999
Q ss_pred hccCcE-EcChhcccccc
Q 001893 926 DKFGFK-KIDPELVCPYT 942 (999)
Q Consensus 926 ~kfGF~-~i~~~e~~~~~ 942 (999)
+ +-+. .+..|+....+
T Consensus 115 ~-~~~t~~i~~E~r~d~~ 131 (143)
T COG5628 115 R-VAETYPVVEEDRQDAR 131 (143)
T ss_pred h-hhcccccchhhhhccc
Confidence 8 4333 33344444443
No 123
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=86.83 E-value=0.54 Score=57.76 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=43.7
Q ss_pred cCCCccchhhccccCCCccccccEEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHh
Q 001893 829 SGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLL 904 (999)
Q Consensus 829 SGrDLIp~mVy~r~~~~~dF~G~y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l 904 (999)
.+-||||+.|- ..|.+-+|.+.+ | |.|-+|||+|+|++.|||.+-++-|.++.
T Consensus 591 a~GdlIpW~vs-eQf~D~~F~~l~-------G---------------aRIVRIAvhP~y~~MGYGsrAvqLL~~y~ 643 (1011)
T KOG2036|consen 591 AAGDLIPWTVS-EQFQDEDFPKLS-------G---------------ARIVRIAVHPEYQKMGYGSRAVQLLTDYF 643 (1011)
T ss_pred ccCCccceehh-hhhcccchhccc-------C---------------ceEEEEEeccchhccCccHHHHHHHHHHH
Confidence 46799998775 457888888887 2 78889999999999999999888887754
No 124
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=84.79 E-value=1.9 Score=41.42 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=40.7
Q ss_pred EEeCCeEEEEEEEEEec--CceEEeeeeeeecCCcCCChhHHHHHHHHHHh
Q 001893 856 LTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLL 904 (999)
Q Consensus 856 L~~~~~vVgaA~lrv~g--~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l 904 (999)
++.++...++|.+..-+ .+++.|-.+||.+..||+|+++.|+++|-+..
T Consensus 13 ~y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 13 IYLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred EEEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 34455677888886644 58999999999999999999999999998774
No 125
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=84.34 E-value=0.16 Score=47.02 Aligned_cols=55 Identities=27% Similarity=0.453 Sum_probs=38.3
Q ss_pred eeEEEe-----cCeEEeeCCCCCCceecCccccccccccccC-CccccccccCCccHHHHHHH
Q 001893 255 LRGIIR-----DGGILCSCSLCNGCRVIPPSKFEIHACKQYR-RASQYICFENGKSLLEVLRA 311 (999)
Q Consensus 255 L~G~I~-----~~GilC~C~~C~~~~v~s~~~FE~HAGs~~~-~p~~~I~LenG~sL~~vl~a 311 (999)
++|++- ..|+...|-.+. .+-+||.+||.|||.... +=-..|.. +|.+|..+|++
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 466665 345555566666 789999999999996543 34556777 89999988864
No 126
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=83.61 E-value=3.2 Score=41.97 Aligned_cols=64 Identities=13% Similarity=0.206 Sum_probs=50.5
Q ss_pred EeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch----hhhHHHHHhccCcEEcChhcccc
Q 001893 877 ELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA----EEAESIWTDKFGFKKIDPELVCP 940 (999)
Q Consensus 877 EIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~----~eA~~~w~~kfGF~~i~~~e~~~ 940 (999)
-|-+|.|-...||.|++|+|.+.+-..+...|-.+|+|++- ..|-..+-..|||+.+++.+.-.
T Consensus 86 YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihg 153 (167)
T COG3818 86 YVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHG 153 (167)
T ss_pred EEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEec
Confidence 34455555667999999999999999999999999988754 44556666679999999877643
No 127
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=80.33 E-value=1.2 Score=42.58 Aligned_cols=31 Identities=26% Similarity=0.724 Sum_probs=26.4
Q ss_pred ccccccCCCCCCCCCCCCceecCCC--CCCccCcccccccc
Q 001893 694 GCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 732 (999)
Q Consensus 694 ~C~vC~~~d~s~sg~~~~tLL~CDq--CdraYHv~CL~p~~ 732 (999)
.|.+|+.. .+..+.|.. |.++||+.|....+
T Consensus 57 ~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 57 KCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred cCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCC
Confidence 49999974 467999998 99999999998754
No 128
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=78.74 E-value=2.9 Score=43.91 Aligned_cols=53 Identities=19% Similarity=0.048 Sum_probs=48.0
Q ss_pred eEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccC
Q 001893 875 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFG 929 (999)
Q Consensus 875 ~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfG 929 (999)
+||+.+.||+|+.+|.|+++.+ ..+--.|+.|||..-|--.+....+-+++ |+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R-~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVER-LC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHH-Hh
Confidence 7999999999999999999976 68999999999999999998888888887 54
No 129
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=77.27 E-value=5 Score=45.37 Aligned_cols=81 Identities=9% Similarity=0.039 Sum_probs=63.4
Q ss_pred EEEE-eCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHH--HHhccCc
Q 001893 854 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI--WTDKFGF 930 (999)
Q Consensus 854 ~VL~-~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~--w~~kfGF 930 (999)
++++ .+|++|+++.+..++ +.+.....++.+++|..+-+-.|+-.+.+.+.+.|++.+-+-......+. ++++|||
T Consensus 198 ~~a~~~~g~~va~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~ 276 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFR-DEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGF 276 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeC-CEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCC
Confidence 4445 689999888876665 55555688899999999999999999999999999999998765332343 6667999
Q ss_pred EEcCh
Q 001893 931 KKIDP 935 (999)
Q Consensus 931 ~~i~~ 935 (999)
+...-
T Consensus 277 ~~~~l 281 (330)
T TIGR03019 277 EPQPL 281 (330)
T ss_pred eeccc
Confidence 87654
No 130
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=75.13 E-value=4 Score=46.00 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=46.0
Q ss_pred CCcchhhhhhcCCcCCceEEEecCCcccccceeEEEec------CeEEeeCCCCCCceecCcccccccccc-ccCCcccc
Q 001893 224 KPMTVTELFETGLLDGVSVVYMGGIKFQASGLRGIIRD------GGILCSCSLCNGCRVIPPSKFEIHACK-QYRRASQY 296 (999)
Q Consensus 224 ~p~~vk~Ll~tg~leg~~V~Y~~~~~~~~~~L~G~I~~------~GilC~C~~C~~~~v~s~~~FE~HAGs-~~~~p~~~ 296 (999)
.+++...-..+.+++.+|-++-.+..-++....|++-. .-|.|-|- -..|||.+|=.|||. ..-||-.|
T Consensus 207 ~~~~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~h 282 (284)
T PF07897_consen 207 PRTNSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH----GSFLSPAEFVKHAGGGDVANPLRH 282 (284)
T ss_pred ccccccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec----CCCCCHHHHHHhcCCCCcCCchhc
Confidence 44455555556666777755543322223344555433 24999997 889999999999986 45788888
Q ss_pred c
Q 001893 297 I 297 (999)
Q Consensus 297 I 297 (999)
|
T Consensus 283 i 283 (284)
T PF07897_consen 283 I 283 (284)
T ss_pred c
Confidence 8
No 131
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=74.15 E-value=5.8 Score=38.16 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=35.6
Q ss_pred EEEEEEEEEec-CceEEeeeeeeecCCcCCChhHHHHHHHHHHhh
Q 001893 862 VVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLS 905 (999)
Q Consensus 862 vVgaA~lrv~g-~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~ 905 (999)
.=++|.+..-. .+++.|-.+||.+..||+|+++.|+++|-+...
T Consensus 20 y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~~ 64 (99)
T cd04265 20 YNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDFP 64 (99)
T ss_pred CcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhCC
Confidence 33666665433 479999999999999999999999999988743
No 132
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=73.88 E-value=4.7 Score=46.34 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=44.0
Q ss_pred eeeeeec-CCcCCChhHHHHHHHHHHhhhc-CceEEEEcchhhhHHHHHhccCcEEcChh
Q 001893 879 PLVATSK-INHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFKKIDPE 936 (999)
Q Consensus 879 p~VAT~~-~~RgqG~gr~L~~~IE~~l~~l-gV~~LvLpA~~eA~~~w~~kfGF~~i~~~ 936 (999)
|.-+-++ .||.||||..||++.|+.+++. |-..|-+=......+.|.+ |||...++=
T Consensus 490 pv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~k-lGY~LdGPY 548 (554)
T KOG2535|consen 490 PVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRK-LGYELDGPY 548 (554)
T ss_pred ecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHh-hCeeecChh
Confidence 3334445 6999999999999999999865 4556777777777778877 999877653
No 133
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.90 E-value=3.1 Score=36.01 Aligned_cols=35 Identities=23% Similarity=0.564 Sum_probs=27.7
Q ss_pred CccccccCCCCCCCCCCCCceecCCCCCCccCcccccccc
Q 001893 693 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 732 (999)
Q Consensus 693 ~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~ 732 (999)
..|.+|++.- ...+.++.|..|...||..|....+
T Consensus 6 ~~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 6 CKCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred ccChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCC
Confidence 3499999752 1367899999999999999987643
No 134
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=69.62 E-value=1.8 Score=40.57 Aligned_cols=49 Identities=31% Similarity=0.653 Sum_probs=31.2
Q ss_pred cccccccccC-----------CCC--eecccCCCCcCCccccc-CCCCCCCCccccCcccccc
Q 001893 603 NDDLCTICAD-----------GGN--LLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMFE 651 (999)
Q Consensus 603 ndd~C~VC~d-----------gG~--Ll~CD~CprafH~~CL~-l~~vP~G~W~Cp~C~~~~~ 651 (999)
+||.|.||.. +|+ -+.-..|...||..|+. ..+-....-.||.|+..+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4777777763 233 22233499999999994 3233334559999997543
No 135
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=69.24 E-value=4.8 Score=47.74 Aligned_cols=56 Identities=21% Similarity=0.586 Sum_probs=37.1
Q ss_pred cccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCc----ccC---CCCCcceecCCchhhH
Q 001893 695 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMAD----LRE---LPKGKWFCCMDCSRIN 754 (999)
Q Consensus 695 C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~----Lke---lP~g~WfC~~~C~~I~ 754 (999)
|.+|++.|+.. ++-..|.||.|..|.|++|.-.+.+.. ... ..+..++| .-|.+..
T Consensus 131 C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~s 193 (446)
T PF07227_consen 131 CCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKTS 193 (446)
T ss_pred ccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCChh
Confidence 88998877543 345579999999999999976554321 111 12345666 8897543
No 136
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=67.59 E-value=12 Score=40.05 Aligned_cols=84 Identities=17% Similarity=0.096 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccccEEEEEEe--CC--eEEEEEEEEEecCceEEeeeeee
Q 001893 808 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV--NS--SVVSAGILRVFGQEVAELPLVAT 883 (999)
Q Consensus 808 ~~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G~y~~VL~~--~~--~vVgaA~lrv~g~d~AEIp~VAT 883 (999)
....+-|-.|-..| .|.+|= -.|-.+|..+|+.. ++ .+||.=+=-....+---|--|-|
T Consensus 26 ~~yCqnLcLlaKLF---Ld~Ktl--------------yydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~ 88 (188)
T PF01853_consen 26 KLYCQNLCLLAKLF---LDHKTL--------------YYDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILT 88 (188)
T ss_dssp HHHHHHHHHHHHTT----SSGCC--------------TT-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE
T ss_pred chHHHHHHHHHHHH---hhCeEE--------------EeecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhh
Confidence 45578888888999 444321 13445655555543 22 34444442222233346777889
Q ss_pred ecCCcCCChhHHHHHHHHHHhhhcC
Q 001893 884 SKINHGKGYFQLLFACIEKLLSFLR 908 (999)
Q Consensus 884 ~~~~RgqG~gr~L~~~IE~~l~~lg 908 (999)
.|.||++|+|+.|++.==.+++..|
T Consensus 89 lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 89 LPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred cchhhhcchhhhhhhhHHHHhhccC
Confidence 9999999999999998666666554
No 137
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=67.20 E-value=8.5 Score=39.78 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=41.4
Q ss_pred eEEeeeeeeecCCcCCChhHHHHHHHHHHhhh-cCceEEEEcchhhhHH---HHHhccCcEEcC
Q 001893 875 VAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEEAES---IWTDKFGFKKID 934 (999)
Q Consensus 875 ~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~-lgV~~LvLpA~~eA~~---~w~~kfGF~~i~ 934 (999)
++|+..+---|..||+|||+..+.++...+.. +++.....-.+.++.+ ++ +||+|..+-
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lF-kk~~f~q~~ 169 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLF-KKFLFTQVF 169 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHH-HHhhheeee
Confidence 45666666779999999999999999887654 4555666555444433 44 459997653
No 138
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=65.08 E-value=3.3 Score=53.44 Aligned_cols=44 Identities=27% Similarity=0.755 Sum_probs=38.4
Q ss_pred ccccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceecCCch
Q 001893 694 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 751 (999)
Q Consensus 694 ~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~~~C~ 751 (999)
.|-+|++ .+.+++|..|++-||..|+.+ ++.+.|...|-| .-|.
T Consensus 346 hcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 346 HCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred cccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 5999985 457999999999999999997 678899999999 7775
No 139
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=63.58 E-value=66 Score=33.80 Aligned_cols=112 Identities=13% Similarity=0.226 Sum_probs=70.9
Q ss_pred cCceEEEccCCCCChhHHHHHHHHHHHHhhcCCCcccCCcCCCccchhhccccC-----CCccccccEEEEEEe--CCeE
Q 001893 790 IDVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNL-----RGQEFGGMYCAILTV--NSSV 862 (999)
Q Consensus 790 ~di~W~LLsGk~as~E~~~~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~-----~~~dF~G~y~~VL~~--~~~v 862 (999)
.+|.|..+.= ++...|.+.-..+.+-+-. | ..++. ..-|+.+| .-..|.--|++.+.. ++++
T Consensus 22 ~gF~W~~~dl-----~d~~~l~ely~lL~~nYVE--D---dd~~f-Rf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kL 90 (162)
T PF01233_consen 22 DGFEWSTLDL-----NDDEELKELYELLNENYVE--D---DDNMF-RFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKL 90 (162)
T ss_dssp TTEEEEE--T-----TSHHHHHHHHHHHHHHSSB--T---TTSSE-EE---HHHHHHHHTSTT--GGGEEEEEETTTTEE
T ss_pred CCCEEEecCC-----CCHHHHHHHHHHHHhcCcc--C---CcceE-EeeCCHHHHhheeeCcCCccceEEEEEECCCCEE
Confidence 3688986542 2344556666666677622 1 11222 23455443 344556667777765 6889
Q ss_pred EEE-----EEEEEecC--ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEE
Q 001893 863 VSA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI 912 (999)
Q Consensus 863 Vga-----A~lrv~g~--d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~L 912 (999)
||. +.+||.+. ..+||-++.+++.+|.+++.=.|+.+|-+.+...||-.-
T Consensus 91 vgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qA 147 (162)
T PF01233_consen 91 VGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQA 147 (162)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EE
T ss_pred EEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceee
Confidence 885 45677664 689999999999999999999999999999988887543
No 140
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=63.52 E-value=13 Score=42.02 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=51.0
Q ss_pred HHHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccccEEEEEEeC----CeEEEEEEEEEecCceEEeeeeeeec
Q 001893 810 LSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVN----SSVVSAGILRVFGQEVAELPLVATSK 885 (999)
Q Consensus 810 Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G~y~~VL~~~----~~vVgaA~lrv~g~d~AEIp~VAT~~ 885 (999)
-.+-|-.|-..| .|.+|= | .|-.+|..+|+... ..+||.=+=-....+---|--|-|.|
T Consensus 103 yCqnLcLlaKLF---LdhKtl--------y------yDV~~FlFYVl~e~d~~g~h~vGYFSKEK~s~~~nNLaCIltLP 165 (290)
T PLN03238 103 YCQNLCLLAKLF---LDHKTL--------Y------YDVDPFLFYVMTEVDDHGSHIVGYFSKEKVSAEDYNLACILTLP 165 (290)
T ss_pred HHHHHHHHHHHh---hcCccc--------c------ccccceEEEEEEEecCCCcEEEEEeceeccccCCCcEEEEEecC
Confidence 355566666777 444331 1 24456666666532 34555544322222334577788999
Q ss_pred CCcCCChhHHHHHHHHHHhhhcC
Q 001893 886 INHGKGYFQLLFACIEKLLSFLR 908 (999)
Q Consensus 886 ~~RgqG~gr~L~~~IE~~l~~lg 908 (999)
.||++|||+.|++.==.+.+..|
T Consensus 166 pyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 166 PYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred hhhhccHhHhHHHHHhHHhhccC
Confidence 99999999999997766666655
No 141
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=63.33 E-value=4.9 Score=45.37 Aligned_cols=32 Identities=41% Similarity=0.736 Sum_probs=29.3
Q ss_pred CeeecCCCceecccccccccCcCCCCCCcceE
Q 001893 546 GIICHCCNSEVSPSQFEAHAGWSSRRKPYAHI 577 (999)
Q Consensus 546 GI~C~cC~~~~SPS~FE~HAG~~srRkPy~~I 577 (999)
.|+|.|-...+||.+|-.|||...-.+|..+|
T Consensus 252 ~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 59999999999999999999988888888887
No 142
>PRK14852 hypothetical protein; Provisional
Probab=63.19 E-value=21 Score=46.68 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=55.6
Q ss_pred CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEEcChh
Q 001893 873 QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 936 (999)
Q Consensus 873 ~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~~ 936 (999)
..++|+-++|+++..|.+-+--.|+..+-.++...++..+++...++=..||++-|||+.+++.
T Consensus 119 r~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 119 RNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred CeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCcccccc
Confidence 4699999999988888776666777777777778899999999999999999999999999864
No 143
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=62.81 E-value=2.7 Score=49.26 Aligned_cols=34 Identities=26% Similarity=0.637 Sum_probs=21.4
Q ss_pred ccccccCCCCCCCCCCCCceecCCCCCCccCccccc
Q 001893 694 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLK 729 (999)
Q Consensus 694 ~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~ 729 (999)
.|.+|++.-+...|-++-.-|.| =++-||++|..
T Consensus 396 rCs~C~~PI~P~~G~~etvRvva--mdr~fHv~CY~ 429 (468)
T KOG1701|consen 396 RCSVCGNPILPRDGKDETVRVVA--MDRDFHVNCYK 429 (468)
T ss_pred chhhccCCccCCCCCcceEEEEE--cccccccccee
Confidence 39999987655544333323333 36889999975
No 144
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=62.74 E-value=15 Score=34.64 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=34.7
Q ss_pred ccccccEEEEEEeCCeEEEEEEEEEec-----------------------CceEEeeeeeeecCCcCCChhHHHH
Q 001893 846 QEFGGMYCAILTVNSSVVSAGILRVFG-----------------------QEVAELPLVATSKINHGKGYFQLLF 897 (999)
Q Consensus 846 ~dF~G~y~~VL~~~~~vVgaA~lrv~g-----------------------~d~AEIp~VAT~~~~RgqG~gr~L~ 897 (999)
.|-...+.+|...+.++||+.+|.... ..++||.++||+++||+...-..|.
T Consensus 26 fD~~~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 26 FDEHSVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CCCCccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 443344444443334588887764422 3689999999999999998766654
No 145
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=62.38 E-value=33 Score=34.58 Aligned_cols=63 Identities=6% Similarity=0.043 Sum_probs=51.9
Q ss_pred ccEEEEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEE
Q 001893 850 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 913 (999)
Q Consensus 850 G~y~~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~Lv 913 (999)
|-+.+-+..+|++||+|.+.+....+.-|=.+- +|++...++|...+-.-.+.++.+|.+.+-
T Consensus 38 ~t~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 38 GTYHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred CCEEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 445566679999999999988876655554443 899999999999999999999999999988
No 146
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=62.15 E-value=6.1 Score=35.86 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.3
Q ss_pred eeeeeeecCCcCCChhHHHHHHHHHHh
Q 001893 878 LPLVATSKINHGKGYFQLLFACIEKLL 904 (999)
Q Consensus 878 Ip~VAT~~~~RgqG~gr~L~~~IE~~l 904 (999)
|.+|=|.+.+|++|++++||+++-+..
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 567778999999999999999987753
No 147
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=62.05 E-value=4.3 Score=35.12 Aligned_cols=28 Identities=25% Similarity=0.924 Sum_probs=24.7
Q ss_pred ccccccccC----CCCeecccCCCCcCCcccc
Q 001893 604 DDLCTICAD----GGNLLPCDGCPRAFHKECA 631 (999)
Q Consensus 604 dd~C~VC~d----gG~Ll~CD~CprafH~~CL 631 (999)
...|.+|++ +++++.|..|...||.+|.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 357999984 7889999999999999998
No 148
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=60.27 E-value=0.75 Score=36.99 Aligned_cols=40 Identities=28% Similarity=0.677 Sum_probs=24.0
Q ss_pred cccccccCC---CCeecccCCCCcCCccccc-CCCCCCCCccccCcc
Q 001893 605 DLCTICADG---GNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQ 647 (999)
Q Consensus 605 d~C~VC~dg---G~Ll~CD~CprafH~~CL~-l~~vP~G~W~Cp~C~ 647 (999)
|.|.||.+. ++.+.--.|...||..|+. +- .....||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~---~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWL---KRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHH---HHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHH---HhCCcCCccC
Confidence 568899853 3333333399999999994 11 1123888885
No 149
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=59.31 E-value=4.4 Score=37.13 Aligned_cols=31 Identities=32% Similarity=0.813 Sum_probs=25.4
Q ss_pred ccccccCCCCCCCCCCCCceecCCC--CCCccCcccccccc
Q 001893 694 GCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 732 (999)
Q Consensus 694 ~C~vC~~~d~s~sg~~~~tLL~CDq--CdraYHv~CL~p~~ 732 (999)
.|.+|+.. .+..|.|.. |.+.||+.|....+
T Consensus 38 ~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 38 KCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred CCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCC
Confidence 49999964 257899985 99999999998754
No 150
>PRK00756 acyltransferase NodA; Provisional
Probab=58.83 E-value=15 Score=38.72 Aligned_cols=60 Identities=20% Similarity=0.119 Sum_probs=46.8
Q ss_pred eEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHh--ccCcEEcCh
Q 001893 875 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD--KFGFKKIDP 935 (999)
Q Consensus 875 ~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~--kfGF~~i~~ 935 (999)
+||+.+.||+|+..|.||+..+ ..+--.|+.|||..-|--.+....+-.++ +-|...|-.
T Consensus 85 VaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~r~g~~ti~~ 146 (196)
T PRK00756 85 VAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRHALRNHVERLCRNGLATIVT 146 (196)
T ss_pred EEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccchHHHHHHHHHHhccCcceecc
Confidence 8999999999999999999876 68889999999998887776666555444 135544433
No 151
>PTZ00064 histone acetyltransferase; Provisional
Probab=55.90 E-value=16 Score=44.11 Aligned_cols=83 Identities=18% Similarity=0.094 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccccEEEEEE-e---CCeEEEEEEEEEecCceEEeeeeeee
Q 001893 809 LLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILT-V---NSSVVSAGILRVFGQEVAELPLVATS 884 (999)
Q Consensus 809 ~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G~y~~VL~-~---~~~vVgaA~lrv~g~d~AEIp~VAT~ 884 (999)
...+-|-.|-..| .|.+| +| .|-.+|+.+||. . +-.+||+=+=-....+---|--|-|.
T Consensus 331 lYCQNLCLLAKLF---LDhKT--------LY------yDVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~nNLACILtL 393 (552)
T PTZ00064 331 GYAENLCYLAKLF---LDHKT--------LQ------YDVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLHYNLACILTL 393 (552)
T ss_pred hHHHHHHHHHHHh---ccCcc--------cc------ccccceEEEEEEEecCCCcEEEEEecccccCcccCceEEEEec
Confidence 3466666677777 44432 11 345677766665 3 23555554432222233357778899
Q ss_pred cCCcCCChhHHHHHHHHHHhhhcC
Q 001893 885 KINHGKGYFQLLFACIEKLLSFLR 908 (999)
Q Consensus 885 ~~~RgqG~gr~L~~~IE~~l~~lg 908 (999)
|.||++|||+.|++.==.+.+..|
T Consensus 394 PpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 394 PCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred chhhhcchhhhhhhhhhhhhhhcC
Confidence 999999999999987666655554
No 152
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.53 E-value=64 Score=35.18 Aligned_cols=83 Identities=22% Similarity=0.144 Sum_probs=63.0
Q ss_pred cccEEEEEEeCCeEEEEEEEEEec---------------------CceEEeeeeeeec--CCcCCC----hhHHHHHHHH
Q 001893 849 GGMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSK--INHGKG----YFQLLFACIE 901 (999)
Q Consensus 849 ~G~y~~VL~~~~~vVgaA~lrv~g---------------------~d~AEIp~VAT~~--~~RgqG----~gr~L~~~IE 901 (999)
.-.|-+.+..+|+|+|+++|-... .+++|.-++|++. .-|..| ....||..+.
T Consensus 51 ~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~i 130 (209)
T COG3916 51 DTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMI 130 (209)
T ss_pred CceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHH
Confidence 456655558899999999985432 4799999999987 444444 2678999999
Q ss_pred HHhhhcCceEEEEcchhhhHHHHHhccCcEE
Q 001893 902 KLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 932 (999)
Q Consensus 902 ~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 932 (999)
+.+...|++.|+.-+..-.+.+..+ .||..
T Consensus 131 e~a~~~G~~~IvtVt~~~meril~r-~Gw~~ 160 (209)
T COG3916 131 EYALARGITGIVTVTDTGMERILRR-AGWPL 160 (209)
T ss_pred HHHHHcCCceEEEEEchHHHHHHHH-cCCCe
Confidence 9999999999998777666666665 66643
No 153
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=54.80 E-value=12 Score=44.69 Aligned_cols=83 Identities=18% Similarity=0.154 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccccEEEEEEe----CCeEEEEEEEEEecCceEEeeeeeee
Q 001893 809 LLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV----NSSVVSAGILRVFGQEVAELPLVATS 884 (999)
Q Consensus 809 ~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G~y~~VL~~----~~~vVgaA~lrv~g~d~AEIp~VAT~ 884 (999)
...+-|-.|-..| .|.+| +| .|-..|..+||.. +-.+||.=+=-....+---|--|-|.
T Consensus 253 ~yCqnLcLlaKLF---LdhKt--------ly------ydV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIltl 315 (450)
T PLN00104 253 VYCQNLCYLAKLF---LDHKT--------LY------YDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILTL 315 (450)
T ss_pred hHHHHHHHHHHHh---hcCcc--------ee------ccccceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEEec
Confidence 3456666666777 34322 11 3445677667643 34666654432222232357788899
Q ss_pred cCCcCCChhHHHHHHHHHHhhhcC
Q 001893 885 KINHGKGYFQLLFACIEKLLSFLR 908 (999)
Q Consensus 885 ~~~RgqG~gr~L~~~IE~~l~~lg 908 (999)
|.||++|||+.|++.==.+.+..|
T Consensus 316 P~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 316 PPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred chhhhcchhheehhheehhhhccC
Confidence 999999999999986555444443
No 154
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=53.84 E-value=8.1 Score=34.69 Aligned_cols=47 Identities=32% Similarity=0.610 Sum_probs=17.9
Q ss_pred ccccccccC----CCC--eeccc--CCCCcCCccccc-----CC-CCCC---CCccccCccccc
Q 001893 604 DDLCTICAD----GGN--LLPCD--GCPRAFHKECAS-----LS-SIPQ---GDWYCKYCQNMF 650 (999)
Q Consensus 604 dd~C~VC~d----gG~--Ll~CD--~CprafH~~CL~-----l~-~vP~---G~W~Cp~C~~~~ 650 (999)
+..|.||.. .++ .+.|+ .|...||..||. .+ .... -.+.||.|...+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 346888874 232 47897 799999999993 11 1111 235699998643
No 155
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=53.71 E-value=8.6 Score=46.26 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=39.9
Q ss_pred CCccccccccccCCCCeecccCCCCcCCcccccCCCCCCCCccccCccc
Q 001893 600 GKDNDDLCTICADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 648 (999)
Q Consensus 600 ~~~ndd~C~VC~dgG~Ll~CD~CprafH~~CL~l~~vP~G~W~Cp~C~~ 648 (999)
...+.+.|.+|.++|.+++|+.|..++|..|... ..|+..|.|..|..
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 3567889999999999999999999999999864 55677788877764
No 156
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.68 E-value=8.1 Score=44.77 Aligned_cols=42 Identities=31% Similarity=0.766 Sum_probs=31.0
Q ss_pred cccccccC---CCCeecccCCCCcCCccccc--CCCCCCCCccccCcccc
Q 001893 605 DLCTICAD---GGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 649 (999)
Q Consensus 605 d~C~VC~d---gG~Ll~CD~CprafH~~CL~--l~~vP~G~W~Cp~C~~~ 649 (999)
+.|.||.+ .|+.+.==-|.+.||..|++ +... .-+||.|+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 59999996 46655556689999999996 2222 2379999974
No 157
>PLN03239 histone acetyltransferase; Provisional
Probab=53.38 E-value=23 Score=41.19 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccccEEEEEEe----CCeEEEEEEEEEecCceEEeeeeeee
Q 001893 809 LLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV----NSSVVSAGILRVFGQEVAELPLVATS 884 (999)
Q Consensus 809 ~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G~y~~VL~~----~~~vVgaA~lrv~g~d~AEIp~VAT~ 884 (999)
.-.+-|-.|-..| .|.+|= | .|-..|..+||.. +-.+||.=+=-....+---|--|-|.
T Consensus 160 ~yCQnLCLlaKLF---LdhKtl--------y------yDV~~FlFYVl~e~D~~g~h~vGYFSKEK~s~~~~NLaCIltL 222 (351)
T PLN03239 160 IYCQNLCYIAKLF---LDHKTL--------Y------FDVDPFLFYVLCEVDERGFHPVGYYSKEKYSDVGYNLACILTF 222 (351)
T ss_pred HHHHHHHHHHHHh---hcCcce--------e------ccccceEEEEEEEecCCceEEEEEeeecccCCCCCceEEEEec
Confidence 3466666677777 444331 1 2445666666653 23444443322211222357778899
Q ss_pred cCCcCCChhHHHHHHHHHHhhhcC
Q 001893 885 KINHGKGYFQLLFACIEKLLSFLR 908 (999)
Q Consensus 885 ~~~RgqG~gr~L~~~IE~~l~~lg 908 (999)
|.||++|||+.|++.==.+.+..|
T Consensus 223 PpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 223 PAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ChhhhcchhhhhHhhhhHhhhhcC
Confidence 999999999999987666666555
No 158
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=53.25 E-value=12 Score=43.89 Aligned_cols=78 Identities=23% Similarity=0.226 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccccEEEEEEeCCeEEEEEEEEEecCceEE---eeeeeeec
Q 001893 809 LLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVFGQEVAE---LPLVATSK 885 (999)
Q Consensus 809 ~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G~y~~VL~~~~~vVgaA~lrv~g~d~AE---Ip~VAT~~ 885 (999)
...+-|=.+-.+| .|.+ ++| .|-..|..+||...+.. |++..+--...-++ +--|=|.|
T Consensus 209 ~YCQnLCLlaKLF---LdhK--------TLY------yDvdpFlFYVlte~d~~-G~VGYFSKEK~s~~~yNlaCILtLP 270 (396)
T KOG2747|consen 209 LYCQNLCLLAKLF---LDHK--------TLY------YDVDPFLFYVLTECDSY-GCVGYFSKEKESSENYNLACILTLP 270 (396)
T ss_pred HHHHHHHHHHHHH---hcCc--------eeE------EeccceEEEEEEecCCc-ceeeeeccccccccccceeeeeecC
Confidence 3456666666777 3332 222 35567777777655422 22222111112233 66778999
Q ss_pred CCcCCChhHHHHHHHHHHh
Q 001893 886 INHGKGYFQLLFACIEKLL 904 (999)
Q Consensus 886 ~~RgqG~gr~L~~~IE~~l 904 (999)
.||++|||+.|++.==.+.
T Consensus 271 pyQRkGYGklLIdFSYeLS 289 (396)
T KOG2747|consen 271 PYQRKGYGKLLIDFSYELS 289 (396)
T ss_pred hhhhcccchhhhhhhhhhh
Confidence 9999999999998544433
No 159
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=52.55 E-value=2.8 Score=37.85 Aligned_cols=43 Identities=28% Similarity=0.596 Sum_probs=25.3
Q ss_pred cccccccccCCC------------C-eecccCCCCcCCcccccCCCCCCCCccccCcc
Q 001893 603 NDDLCTICADGG------------N-LLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 647 (999)
Q Consensus 603 ndd~C~VC~dgG------------~-Ll~CD~CprafH~~CL~l~~vP~G~W~Cp~C~ 647 (999)
.+|.|.||...= + .+.-..|...||..|+. .+-.....||.|+
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~--~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCIS--QWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHH--HHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHH--HHHhcCCcCCCCC
Confidence 345588887421 1 22224599999999994 1112234899885
No 160
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=51.76 E-value=29 Score=36.90 Aligned_cols=72 Identities=22% Similarity=0.363 Sum_probs=59.2
Q ss_pred EeCCeEEEEEEEEEec----------------------------CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcC
Q 001893 857 TVNSSVVSAGILRVFG----------------------------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLR 908 (999)
Q Consensus 857 ~~~~~vVgaA~lrv~g----------------------------~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lg 908 (999)
..+|++++|+.+|.-. ..++||.-+|.. +.|.++.|+..|-..|...|
T Consensus 41 ~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g 116 (179)
T PF12261_consen 41 DSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQG 116 (179)
T ss_pred cCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHHHHCC
Confidence 4567888888888755 356777777765 58999999999999999999
Q ss_pred ceEEEEcchhhhHHHHHhccCcEEc
Q 001893 909 VKSIVLPAAEEAESIWTDKFGFKKI 933 (999)
Q Consensus 909 V~~LvLpA~~eA~~~w~~kfGF~~i 933 (999)
.+-++.-+......+..+ +|+...
T Consensus 117 ~~w~vfTaT~~lr~~~~r-lgl~~~ 140 (179)
T PF12261_consen 117 FEWVVFTATRQLRNLFRR-LGLPPT 140 (179)
T ss_pred CCEEEEeCCHHHHHHHHH-cCCCce
Confidence 999999999999998887 776543
No 161
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=51.01 E-value=8.3 Score=40.48 Aligned_cols=35 Identities=20% Similarity=0.507 Sum_probs=26.6
Q ss_pred cccccCCCCCCCCCCCCceecCCCCCCccCcccccccc
Q 001893 695 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 732 (999)
Q Consensus 695 C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~ 732 (999)
|..|...+. ....+.||.|..|..+||..||.+..
T Consensus 2 C~~C~~~g~---~~~kG~Lv~CQGCs~sYHk~CLG~Rs 36 (175)
T PF15446_consen 2 CDTCGYEGD---DRNKGPLVYCQGCSSSYHKACLGPRS 36 (175)
T ss_pred cccccCCCC---CccCCCeEEcCccChHHHhhhcCCcc
Confidence 777864321 22467999999999999999998753
No 162
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=50.07 E-value=8 Score=45.53 Aligned_cols=187 Identities=21% Similarity=0.249 Sum_probs=100.5
Q ss_pred cccccccchhhHHhhhcccccceeEEeEEeeEEEEEEeccCCCCCCcccccchhhhhhhhccccccchhhHHHhhhhcCC
Q 001893 21 LPQAGIQASDCVKAACENVRCKRFKVTKVNGFIVYSRVKRSRFSNSDDLLEDDVIDKRINSKIHEGRINKVVKNVLNENG 100 (999)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (999)
|-+.|++ |||+-. .-.+|+|+-+|--=+.-+-+-...-.++|+- -...|.||..|-+.+..-.
T Consensus 97 L~~LGl~--Dcve~I---------DAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~----GrsFhnGRFvq~lR~ka~s-- 159 (509)
T KOG1298|consen 97 LSKLGLE--DCVEGI---------DAQRVTGYAIFKDGKEVDLPYPLKNFPSDPS----GRSFHNGRFVQRLRKKAAS-- 159 (509)
T ss_pred HHHhCHH--HHhhcc---------cceEeeeeEEEeCCceeeccCCCcCCCCCcc----cceeeccHHHHHHHHHHhc--
Confidence 3444554 888643 3456899999964333332222222345543 4468999999888763321
Q ss_pred cchhhHHHhhhhhhhhHhHHHHh--hhcCCCCcccccCCCCcceeeecCCCCcccc--ccccc-----ccccCccccCCC
Q 001893 101 ILESVVEEENQLVQMTVENVIEE--TVKGKKAPICKEEPISKVECFPRKEGGSEVS--NGLNK-----KCLKRPSAMKPK 171 (999)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~trs~lk~k 171 (999)
+-.-++.|-||..++|| .++|++ .+|.+|-+++ +++-- =-+|+||+-++|
T Consensus 160 ------lpNV~~eeGtV~sLlee~gvvkGV~---------------yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~ 218 (509)
T KOG1298|consen 160 ------LPNVRLEEGTVKSLLEEEGVVKGVT---------------YKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPK 218 (509)
T ss_pred ------CCCeEEeeeeHHHHHhccCeEEeEE---------------EecCCCceEEEecceEEEecchhHHHHHHhcCCc
Confidence 11124556677777776 455543 4453444444 23321 156889999999
Q ss_pred CCccccccccc--cCCCCC--------------------ccchhhHhhhhcCCCCCCCCcccccccc-cccccCCCCcch
Q 001893 172 VEPVEVLVTQS--EGFGNE--------------------SMSLIEVEAIAEGSALTSPKKNLELKMS-KKISLNKKPMTV 228 (999)
Q Consensus 172 ~e~~~~~~~~~--e~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~k~~-kk~~~~~~p~~v 228 (999)
|+++.+.-.+. ++-+.. ++++++-... -.+..-|+..+.|||.. |+...-.+|..+
T Consensus 219 v~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~-v~g~~~Psi~~gem~~~mk~~v~PqiP~~l 297 (509)
T KOG1298|consen 219 VEEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVD-VPGQKLPSIANGEMATYMKESVAPQIPEKL 297 (509)
T ss_pred ccccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEe-cCcccCCcccchhHHHHHHHhhCcCCCHHH
Confidence 99775433221 111000 0001110000 11333355567676644 444455689999
Q ss_pred hhhhhcCCcCCc----eEEEec
Q 001893 229 TELFETGLLDGV----SVVYMG 246 (999)
Q Consensus 229 k~Ll~tg~leg~----~V~Y~~ 246 (999)
|+-+..++=+|. |-+||.
T Consensus 298 R~~F~~av~~g~irsmpn~~mp 319 (509)
T KOG1298|consen 298 RESFLEAVDEGNIRSMPNSSMP 319 (509)
T ss_pred HHHHHHHhhccchhcCccccCC
Confidence 998877666654 455553
No 163
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=50.00 E-value=5.3 Score=50.03 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=88.0
Q ss_pred CCccccccE-EEEEEeCCe-EEEEEEEEEecC-ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcC-ceEEEEcchhh
Q 001893 844 RGQEFGGMY-CAILTVNSS-VVSAGILRVFGQ-EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEE 919 (999)
Q Consensus 844 ~~~dF~G~y-~~VL~~~~~-vVgaA~lrv~g~-d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lg-V~~LvLpA~~e 919 (999)
.|+.|.+.- ...+..+++ +||.-.+|-++. +++||.+.|+..+.|-+|+|.-||+.+-+..+..+ +..+..-|...
T Consensus 411 ~rlv~d~~h~~~~~~~d~~g~vggi~~r~f~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~ltyad~~ 490 (720)
T KOG1472|consen 411 SRLVFDTSHHVMARIKDNEGVVGGICFRPFPEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTYADEG 490 (720)
T ss_pred HhhccccccccceeeccccccccccccCcCcccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHhhhhc
Confidence 567887765 333334444 999999999885 89999999999999999999999999999998887 66666666666
Q ss_pred hHHHHHhccCcEEcChhcccccccccceeccCCchhhhhhccCCC
Q 001893 920 AESIWTDKFGFKKIDPELVCPYTESGVLSWSPSREHLCYRKGSLP 964 (999)
Q Consensus 920 A~~~w~~kfGF~~i~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~p 964 (999)
|+...+. -||+..-+.+...|. +.+.+..+.+-..|.+.-.+|
T Consensus 491 aigyfkk-qgfs~ei~~~~~~~~-g~ikdye~~tl~~c~l~~~i~ 533 (720)
T KOG1472|consen 491 AIGYFKK-QGFSKEIKFEKSPYV-GYIKDYEGGTLMPCELLPEIP 533 (720)
T ss_pred ccccccC-ccchhhcccccCcCc-cccccccCccccchhhccCcc
Confidence 6655444 899887776665444 556666666656666554444
No 164
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=49.49 E-value=23 Score=41.16 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=46.3
Q ss_pred cEEEEEEe--CCeEEEEEEEEEec------------------------------------CceEEeeeeeeecCCcCCCh
Q 001893 851 MYCAILTV--NSSVVSAGILRVFG------------------------------------QEVAELPLVATSKINHGKGY 892 (999)
Q Consensus 851 ~y~~VL~~--~~~vVgaA~lrv~g------------------------------------~d~AEIp~VAT~~~~RgqG~ 892 (999)
.|.+|||+ .|+|||++.|..-. ++-.||-.+-++|+||+-|.
T Consensus 59 ~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~ 138 (342)
T PF04958_consen 59 GYLFVLEDTETGEVVGTSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGN 138 (342)
T ss_dssp EEEEEEEETTT--EEEEEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHH
T ss_pred ceEEEEEecCCCcEEEEEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCch
Confidence 48899995 58999998875321 56789999999999999999
Q ss_pred hHHHHHHH----HHHhhhcCceEEEEcch-----hhhHHHHHhccC
Q 001893 893 FQLLFACI----EKLLSFLRVKSIVLPAA-----EEAESIWTDKFG 929 (999)
Q Consensus 893 gr~L~~~I----E~~l~~lgV~~LvLpA~-----~eA~~~w~~kfG 929 (999)
|+.|..+= -..-..+ -++++.+=+ ...-+||.. +|
T Consensus 139 G~lLSr~RfLFiA~~~~rF-~~~viAElrG~~De~G~SPFWda-lG 182 (342)
T PF04958_consen 139 GRLLSRSRFLFIAQHRERF-ADRVIAELRGVSDEDGRSPFWDA-LG 182 (342)
T ss_dssp HHHHHHHHHHHHHH-GGGS--SEEEEE--B---TT---HHHHH-TG
T ss_pred HHHHHHHHHHHHHhChhhc-chheeeeccCCcCCCCCCchHHH-hh
Confidence 98886542 2221122 234443322 234689996 44
No 165
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=46.00 E-value=36 Score=39.52 Aligned_cols=50 Identities=16% Similarity=0.052 Sum_probs=39.7
Q ss_pred ccEEEEEEe--CCeEEEEEEEEEec------------------------------------CceEEeeeeeeecCCcCCC
Q 001893 850 GMYCAILTV--NSSVVSAGILRVFG------------------------------------QEVAELPLVATSKINHGKG 891 (999)
Q Consensus 850 G~y~~VL~~--~~~vVgaA~lrv~g------------------------------------~d~AEIp~VAT~~~~RgqG 891 (999)
--|.+||+. .|+|||++.|...- ++..||--+-.+|+||+-|
T Consensus 54 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~ 133 (336)
T TIGR03244 54 QGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGG 133 (336)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCc
Confidence 457789985 58999998876522 5678999999999999999
Q ss_pred hhHHHHHH
Q 001893 892 YFQLLFAC 899 (999)
Q Consensus 892 ~gr~L~~~ 899 (999)
.|+.|-.+
T Consensus 134 ~G~LLSr~ 141 (336)
T TIGR03244 134 NGRLLSKS 141 (336)
T ss_pred chhhHHHH
Confidence 99877553
No 166
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=45.72 E-value=34 Score=39.72 Aligned_cols=50 Identities=10% Similarity=-0.016 Sum_probs=39.7
Q ss_pred ccEEEEEEe--CCeEEEEEEEEEec------------------------------------CceEEeeeeeeecCCcCCC
Q 001893 850 GMYCAILTV--NSSVVSAGILRVFG------------------------------------QEVAELPLVATSKINHGKG 891 (999)
Q Consensus 850 G~y~~VL~~--~~~vVgaA~lrv~g------------------------------------~d~AEIp~VAT~~~~RgqG 891 (999)
--|.+|||+ .|+|||++.|...- ++..||--+-++|+||+-|
T Consensus 55 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 134 (336)
T TIGR03245 55 ERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTE 134 (336)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 457789984 68999998875522 5678999999999999999
Q ss_pred hhHHHHHH
Q 001893 892 YFQLLFAC 899 (999)
Q Consensus 892 ~gr~L~~~ 899 (999)
.|+.|-.+
T Consensus 135 ~G~lLSr~ 142 (336)
T TIGR03245 135 AAELLSRA 142 (336)
T ss_pred chhHHHHH
Confidence 99877553
No 167
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=45.23 E-value=35 Score=39.55 Aligned_cols=50 Identities=16% Similarity=0.052 Sum_probs=39.9
Q ss_pred ccEEEEEEe--CCeEEEEEEEEEec------------------------------------CceEEeeeeeeecCCcCCC
Q 001893 850 GMYCAILTV--NSSVVSAGILRVFG------------------------------------QEVAELPLVATSKINHGKG 891 (999)
Q Consensus 850 G~y~~VL~~--~~~vVgaA~lrv~g------------------------------------~d~AEIp~VAT~~~~RgqG 891 (999)
-.|.+|||+ .|+|||++.|...- ++..||--+-++|+||+-|
T Consensus 54 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 133 (335)
T TIGR03243 54 EGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGG 133 (335)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 467789984 58999998875522 5678999999999999999
Q ss_pred hhHHHHHH
Q 001893 892 YFQLLFAC 899 (999)
Q Consensus 892 ~gr~L~~~ 899 (999)
.|+.|-.+
T Consensus 134 ~G~LLSr~ 141 (335)
T TIGR03243 134 NGRLLSRS 141 (335)
T ss_pred chhhHHHH
Confidence 99877553
No 168
>PRK10456 arginine succinyltransferase; Provisional
Probab=44.19 E-value=35 Score=39.69 Aligned_cols=50 Identities=18% Similarity=0.042 Sum_probs=39.6
Q ss_pred ccEEEEEEe--CCeEEEEEEEEEec------------------------------------CceEEeeeeeeecCCcCCC
Q 001893 850 GMYCAILTV--NSSVVSAGILRVFG------------------------------------QEVAELPLVATSKINHGKG 891 (999)
Q Consensus 850 G~y~~VL~~--~~~vVgaA~lrv~g------------------------------------~d~AEIp~VAT~~~~RgqG 891 (999)
..|.+||++ .|+|||++.|.... ++..||--+-++|+||+-|
T Consensus 56 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~ 135 (344)
T PRK10456 56 QGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEG 135 (344)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCC
Confidence 457789984 58999998876522 5678899999999999999
Q ss_pred hhHHHHHH
Q 001893 892 YFQLLFAC 899 (999)
Q Consensus 892 ~gr~L~~~ 899 (999)
.|+.|-.+
T Consensus 136 ~G~LLSr~ 143 (344)
T PRK10456 136 NGYLLSKS 143 (344)
T ss_pred chhHHHHH
Confidence 99877553
No 169
>PHA02929 N1R/p28-like protein; Provisional
Probab=41.68 E-value=10 Score=41.93 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=31.0
Q ss_pred ccccccccccCCCC--------eecccCCCCcCCcccccCCCCCCCCccccCccccc
Q 001893 602 DNDDLCTICADGGN--------LLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 650 (999)
Q Consensus 602 ~ndd~C~VC~dgG~--------Ll~CD~CprafH~~CL~l~~vP~G~W~Cp~C~~~~ 650 (999)
..+..|.+|.+.-. ...-..|.+.||..|+. .|-...-.||.|+..+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~--~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID--IWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH--HHHhcCCCCCCCCCEe
Confidence 34678999997421 12234689999999994 1222334799999754
No 170
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=39.54 E-value=11 Score=28.95 Aligned_cols=40 Identities=23% Similarity=0.567 Sum_probs=27.0
Q ss_pred cccccCCC-CeecccCCCCcCCccccc-CCCCCCCCccccCccc
Q 001893 607 CTICADGG-NLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQN 648 (999)
Q Consensus 607 C~VC~dgG-~Ll~CD~CprafH~~CL~-l~~vP~G~W~Cp~C~~ 648 (999)
|.+|.+.- +.+....|...||..|+. +.. .+...||.|+.
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~--~~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLK--SGKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHH--hCcCCCCCCCC
Confidence 77787654 444455699999999994 211 14667999974
No 171
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=36.53 E-value=18 Score=34.58 Aligned_cols=29 Identities=41% Similarity=0.980 Sum_probs=25.2
Q ss_pred cccccccccC-CCCeecccC--CCCcCCcccc
Q 001893 603 NDDLCTICAD-GGNLLPCDG--CPRAFHKECA 631 (999)
Q Consensus 603 ndd~C~VC~d-gG~Ll~CD~--CprafH~~CL 631 (999)
....|.+|+. .|-.+-|.. |..+||..|.
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA 85 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCA 85 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHH
Confidence 4568999997 577889987 9999999998
No 172
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=35.92 E-value=1.7e+02 Score=32.60 Aligned_cols=59 Identities=7% Similarity=0.027 Sum_probs=47.6
Q ss_pred EEEEeCCeEEEEEEEEEecCceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEE
Q 001893 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 913 (999)
Q Consensus 854 ~VL~~~~~vVgaA~lrv~g~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~Lv 913 (999)
+-+..+|++||+|.+-+....+.-|=.+ =+|+|-..++|...+-.-.+.++.+|.+.+-
T Consensus 147 ~ey~~~g~LiaVav~D~l~d~lSAVY~F-yDPd~~~~SLG~~~iL~qI~~ak~~gl~y~Y 205 (240)
T PRK01305 147 IEFRGDGKLVAVAVTDVLDDGLSAVYTF-YDPDEEHRSLGTFAILWQIELAKRLGLPYVY 205 (240)
T ss_pred EEEEeCCeEEEEEEEeccCCceeeEEEe-eCCCccccCCHHHHHHHHHHHHHHcCCCeEe
Confidence 4445799999999998888776665322 3888888889988888888999999998887
No 173
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=35.08 E-value=40 Score=36.23 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=24.4
Q ss_pred cCCccccccccCCc-cHHHHHHHhhCCCchhHHHHHhh
Q 001893 290 YRRASQYICFENGK-SLLEVLRACRSVPLPMLKATLQS 326 (999)
Q Consensus 290 ~~~p~~~I~LenG~-sL~~vl~a~~~~~l~~l~~~I~~ 326 (999)
...+.+|++-+... ||.|+++.-.++=+..|+.+++.
T Consensus 100 ~~~~~~hl~~~~~~YSl~DL~~v~~G~L~~~L~~l~~~ 137 (202)
T PF13901_consen 100 LRQPRDHLLEDPHLYSLADLVQVKSGQLLPQLEKLVQF 137 (202)
T ss_pred hccchhhhhhCCceEcHHHHHHHhhchHHHHHHHHHHH
Confidence 33778887544444 99999888766555556555544
No 174
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=34.91 E-value=20 Score=32.23 Aligned_cols=34 Identities=26% Similarity=0.710 Sum_probs=13.2
Q ss_pred ccccccCCCCCCCCCCCCceecCC--CCCCccCcccccc
Q 001893 694 GCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKK 730 (999)
Q Consensus 694 ~C~vC~~~d~s~sg~~~~tLL~CD--qCdraYHv~CL~p 730 (999)
.|.+|...-. ..+....+.|+ .|.+.||..||..
T Consensus 4 ~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 4 ECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp S-SSS--SS----TT-----B--S-TT----B-SGGGHH
T ss_pred CCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHH
Confidence 3899986421 11334568998 9999999999975
No 175
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=33.43 E-value=19 Score=41.09 Aligned_cols=109 Identities=18% Similarity=0.308 Sum_probs=55.6
Q ss_pred cccccc-CCCCeecccCCCCcCCcccccCCCCCCCCccccCcccccchhhhccccccccccCcccccCchhhhhhhhhhh
Q 001893 606 LCTICA-DGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRI 684 (999)
Q Consensus 606 ~C~VC~-dgG~Ll~CD~CprafH~~CL~l~~vP~G~W~Cp~C~~~~~~ek~v~~n~~a~a~Gr~sGvds~eqi~kRc~R~ 684 (999)
.|..|. +++....|-.|.-.+|-.-..+.-+..+.+.|.-|...+.+...- ....+..++ .+.+..
T Consensus 57 sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc~-----l~~~~~~~n---~~N~YN----- 123 (345)
T KOG2752|consen 57 SCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSCN-----LLEDKDAEN---SENLYN----- 123 (345)
T ss_pred EeecccCChhhceeEEEeeeeecCCceeeeccccCCcccccccccccccccc-----ccccccccc---chhhhh-----
Confidence 355565 344666777777666655554444556788888777665432110 000000000 000000
Q ss_pred hcccccccCccccccCCCCCCCCCCCCceecCCCCCCccC-ccccccc
Q 001893 685 VKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFH-VGCLKKH 731 (999)
Q Consensus 685 vk~~~~e~~~C~vC~~~d~s~sg~~~~tLL~CDqCdraYH-v~CL~p~ 731 (999)
...+..+| .|....-...-..++.|++|-.|+-||| -+|++..
T Consensus 124 ---hNfqG~~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 124 ---HNFQGLFC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred ---hhhcceeE-EecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 00011123 2333321111224678999999999999 8898764
No 176
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=32.46 E-value=21 Score=32.73 Aligned_cols=29 Identities=38% Similarity=0.927 Sum_probs=25.1
Q ss_pred ccccccccCC-CCeecccC--CCCcCCccccc
Q 001893 604 DDLCTICADG-GNLLPCDG--CPRAFHKECAS 632 (999)
Q Consensus 604 dd~C~VC~dg-G~Ll~CD~--CprafH~~CL~ 632 (999)
...|.+|... |-.+-|.. |.+.||..|.-
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 4579999988 88888865 99999999983
No 177
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=17 Score=41.03 Aligned_cols=49 Identities=18% Similarity=0.513 Sum_probs=38.0
Q ss_pred CccccccccccCCCCeecccCCCCcCCccccc--CCCCCCCCccccCcccccchh
Q 001893 601 KDNDDLCTICADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERK 653 (999)
Q Consensus 601 ~~ndd~C~VC~dgG~Ll~CD~CprafH~~CL~--l~~vP~G~W~Cp~C~~~~~~e 653 (999)
.+++-.|.+|.+.-.-..|--|++-|...|+. ..+.++ ||.|+..+++.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e----CPlCR~~~~ps 286 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE----CPLCREKFQPS 286 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC----CCcccccCCCc
Confidence 45678899999998888899999999999984 223333 99999766543
No 178
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=30.62 E-value=33 Score=44.57 Aligned_cols=46 Identities=37% Similarity=0.983 Sum_probs=37.3
Q ss_pred ccccccccCCCC--eecccCCCCcCCccccc--CCCCCCCCccccCcccc
Q 001893 604 DDLCTICADGGN--LLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 649 (999)
Q Consensus 604 dd~C~VC~dgG~--Ll~CD~CprafH~~CL~--l~~vP~G~W~Cp~C~~~ 649 (999)
...|..|..+.. ++.|++|...||..|.. ++.+++|+|.|+.|...
T Consensus 155 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 155 YPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred chhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 356777875542 33999999999999995 77899999999999764
No 179
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.88 E-value=15 Score=41.23 Aligned_cols=48 Identities=21% Similarity=0.510 Sum_probs=30.4
Q ss_pred CccccccccccCCCC----------eecccCCCCcCCccccc-CCCCCCCCccccCcccc
Q 001893 601 KDNDDLCTICADGGN----------LLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNM 649 (999)
Q Consensus 601 ~~ndd~C~VC~dgG~----------Ll~CD~CprafH~~CL~-l~~vP~G~W~Cp~C~~~ 649 (999)
+-+|..|.+|+..=+ -..=-.|.+.||.+|+. +--+ ...-.||.|+.+
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv-GKkqtCPYCKek 279 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV-GKKQTCPYCKEK 279 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee-cCCCCCchHHHH
Confidence 457889999995311 11222489999999994 2111 123479999864
No 180
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=29.13 E-value=14 Score=27.06 Aligned_cols=38 Identities=24% Similarity=0.555 Sum_probs=23.9
Q ss_pred cccccCCCCeecccCCCCcCCccccc-CCCCCCCCccccCc
Q 001893 607 CTICADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYC 646 (999)
Q Consensus 607 C~VC~dgG~Ll~CD~CprafH~~CL~-l~~vP~G~W~Cp~C 646 (999)
|.+|.+......-..|...||..|+. +.. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~--~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK--SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH--hCcCCCCCC
Confidence 66777765555555699999999984 111 233446655
No 181
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=29.02 E-value=74 Score=30.99 Aligned_cols=68 Identities=29% Similarity=0.584 Sum_probs=45.6
Q ss_pred CCccchhhhcccCCCCCCCeEEEee----Cc----------EEeecce-ecCCCeeecCCCceecccccc-cccCcCCCC
Q 001893 508 KDQRLHKLVFDESGLPDGTEVGYYA----CG----------QKLLEGY-KNGLGIICHCCNSEVSPSQFE-AHAGWSSRR 571 (999)
Q Consensus 508 ~d~~lhk~lF~~~gL~dgt~V~Y~~----~G----------q~ll~G~-k~g~GI~C~cC~~~~SPS~FE-~HAG~~srR 571 (999)
+|..||+--|. .+|++|.+.+ .| -.-..|| .+++.++|.-|+..++...+. ..+|+
T Consensus 3 ~Dgklh~y~y~----~~G~~vrff~i~~~dg~~~va~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GGC---- 74 (102)
T PF10080_consen 3 KDGKLHRYAYT----DDGKEVRFFAIKKPDGSYRVAFDACEICGPKGYYQEGDQLVCKNCGVRFNLPTIGGKSGGC---- 74 (102)
T ss_pred cCCcEEEEEEc----CCCEEEEEEEEECCCCCEEEEEEeccccCCCceEEECCEEEEecCCCEEehhhcccccCCC----
Confidence 57788888773 4567776653 12 1345675 467779999999888888888 66775
Q ss_pred CCcceEEccCCc
Q 001893 572 KPYAHIYTSNGV 583 (999)
Q Consensus 572 kPy~~I~~s~G~ 583 (999)
||+.--|+-+|-
T Consensus 75 NP~P~~~~~~~~ 86 (102)
T PF10080_consen 75 NPIPLPYTVDGG 86 (102)
T ss_pred CccCCceEecCC
Confidence 565555554443
No 182
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=28.28 E-value=32 Score=39.98 Aligned_cols=44 Identities=18% Similarity=0.456 Sum_probs=34.3
Q ss_pred ceecCCCCCCccCccc--cccccCCcccCCCCCcceecCCchhhHHHHHh
Q 001893 712 TILLCDQCEREFHVGC--LKKHKMADLRELPKGKWFCCMDCSRINSVLQN 759 (999)
Q Consensus 712 tLL~CDqCdraYHv~C--L~p~~~~~LkelP~g~WfC~~~C~~I~~~Lq~ 759 (999)
-++.|+.|..|||..| ++.+ .....+...|+| ..|......++.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~---~~e~p~~~~~~c-~~c~~~~~~~~~ 119 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTA---EKEAPKEDPKVC-DECKEAQDGMSE 119 (345)
T ss_pred hhhccccccccccccccccCch---hhcCCccccccc-cccchhhhhhhh
Confidence 6799999999999999 7652 334445678999 899988766664
No 183
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=27.67 E-value=41 Score=30.29 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=23.8
Q ss_pred ccceeEEeEEeeEEEEEEeccCCCCCCccc
Q 001893 40 RCKRFKVTKVNGFIVYSRVKRSRFSNSDDL 69 (999)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (999)
+=-.|.|+ |||-+||||++..+|-..+.|
T Consensus 39 ~~G~Fev~-~~g~~v~sk~~~~~fp~~~~~ 67 (72)
T TIGR02174 39 TTGAFEVT-VNGQLVWSKLRGGGFPEPEEL 67 (72)
T ss_pred CCcEEEEE-ECCEEEEEeccCCCCCCHHHH
Confidence 44579997 799999999999998876654
No 184
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.81 E-value=15 Score=43.06 Aligned_cols=43 Identities=35% Similarity=0.688 Sum_probs=30.5
Q ss_pred cccccccCCC----CeecccCCCCcCCcccccCCCCCCC-Cc--cccCcccc
Q 001893 605 DLCTICADGG----NLLPCDGCPRAFHKECASLSSIPQG-DW--YCKYCQNM 649 (999)
Q Consensus 605 d~C~VC~dgG----~Ll~CD~CprafH~~CL~l~~vP~G-~W--~Cp~C~~~ 649 (999)
..|.||.|+- ++..-..|+..||..|+. .|-++ +| -||.|+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~--qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLT--QWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHH--HHHccCCccCCCCceeec
Confidence 5799998753 355666799999999993 33333 24 69999843
No 185
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.56 E-value=28 Score=41.54 Aligned_cols=42 Identities=21% Similarity=0.462 Sum_probs=28.8
Q ss_pred cccccccccC---CC-CeecccCCCCcCCcccccCCCCCCCCccccCccc
Q 001893 603 NDDLCTICAD---GG-NLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 648 (999)
Q Consensus 603 ndd~C~VC~d---gG-~Ll~CD~CprafH~~CL~l~~vP~G~W~Cp~C~~ 648 (999)
.-..|.||.. .. ..+.---|.++||-.|+. .| ++-.||.|+.
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~--~w--~~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLM--KW--WDSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHh--hc--ccCcChhhhh
Confidence 4467999983 22 245556699999999994 12 2347888885
No 186
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.08 E-value=20 Score=40.05 Aligned_cols=50 Identities=20% Similarity=0.472 Sum_probs=37.8
Q ss_pred ccccccccccCCCCeecccCCCCcCCcccccCCCCCC-CCccccCcccccch
Q 001893 602 DNDDLCTICADGGNLLPCDGCPRAFHKECASLSSIPQ-GDWYCKYCQNMFER 652 (999)
Q Consensus 602 ~ndd~C~VC~dgG~Ll~CD~CprafH~~CL~l~~vP~-G~W~Cp~C~~~~~~ 652 (999)
..|-.|.+|.+.-+-..|-.|++.|...|+-.. +-. -.-+||.|+.....
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~-~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLIS-WTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHH-HHhhccccCchhhhhccc
Confidence 567889999999999999999999999998431 211 12369999975443
No 187
>PLN02400 cellulose synthase
Probab=24.88 E-value=62 Score=42.75 Aligned_cols=49 Identities=24% Similarity=0.742 Sum_probs=37.7
Q ss_pred ccccccccccCC------CC-eecccCCCCcCCcccccCCCCCCCCccccCcccccc
Q 001893 602 DNDDLCTICADG------GN-LLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 651 (999)
Q Consensus 602 ~ndd~C~VC~dg------G~-Ll~CD~CprafH~~CL~l~~vP~G~W~Cp~C~~~~~ 651 (999)
-+...|.||+|. |+ .+-|..|.-.-...|... +..+|.=.||.|+....
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhhe-ecccCCccCcccCCccc
Confidence 356799999963 33 778999987777788743 56688899999997654
No 188
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=24.22 E-value=55 Score=40.01 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=37.7
Q ss_pred ccccccccccCCCCeecccCCCCcCCcccccCC-CCC--CCCccccCccc
Q 001893 602 DNDDLCTICADGGNLLPCDGCPRAFHKECASLS-SIP--QGDWYCKYCQN 648 (999)
Q Consensus 602 ~ndd~C~VC~dgG~Ll~CD~CprafH~~CL~l~-~vP--~G~W~Cp~C~~ 648 (999)
..+.+|+-|.-.|..+.|+.|-|+||..|+... ..+ ...|.|+.|..
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 346789999999999999999999999999522 222 34699998875
No 189
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=24.15 E-value=33 Score=39.86 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhcCCCcccCCcCCCccchhhccccCCCccccccEEEEEEeCCe----EEEEEEEEEecCceEEeeeeee
Q 001893 808 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSS----VVSAGILRVFGQEVAELPLVAT 883 (999)
Q Consensus 808 ~~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~~~~~dF~G~y~~VL~~~~~----vVgaA~lrv~g~d~AEIp~VAT 883 (999)
....+-+-.+..+| +|.+ |+| +|-.+|..+|+...|. +||.-+=--...+--.+--|-|
T Consensus 208 ~~~CrnLCLlsKlF---Ld~K--------tLY------yDVDpflFYvl~~~~~~~~h~vGyFSKEK~S~~~yNLaCILt 270 (395)
T COG5027 208 RLYCRNLCLLSKLF---LDHK--------TLY------YDVDPFLFYVLTERGDTGCHLVGYFSKEKESEQDYNLACILT 270 (395)
T ss_pred hhHHHHHHHHHHHH---hcCc--------eeE------EeccceEEEEEEEcCCcceeeeeeechhhcccccCceEEEEe
Confidence 34456666667777 3321 233 4556766666665542 3333222112223345677889
Q ss_pred ecCCcCCChhHHHHHH
Q 001893 884 SKINHGKGYFQLLFAC 899 (999)
Q Consensus 884 ~~~~RgqG~gr~L~~~ 899 (999)
.|.||++|||..|++.
T Consensus 271 LP~yQRrGYG~lLIdF 286 (395)
T COG5027 271 LPPYQRRGYGKLLIDF 286 (395)
T ss_pred cChhHhcccceEeeee
Confidence 9999999999998863
No 190
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=23.83 E-value=20 Score=47.81 Aligned_cols=50 Identities=32% Similarity=0.672 Sum_probs=31.1
Q ss_pred CccccccccccCCC-Ceecc--cCCCCcCCccccc--CCCCC------CCCccccCccccc
Q 001893 601 KDNDDLCTICADGG-NLLPC--DGCPRAFHKECAS--LSSIP------QGDWYCKYCQNMF 650 (999)
Q Consensus 601 ~~ndd~C~VC~dgG-~Ll~C--D~CprafH~~CL~--l~~vP------~G~W~Cp~C~~~~ 650 (999)
++.||+|.+|-... ...-| -+|.+-||+.|.. ++..- -|--.||.|++..
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 56678888886321 11122 2599999999984 32221 1334799999864
No 191
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=23.63 E-value=4.1e+02 Score=31.53 Aligned_cols=125 Identities=17% Similarity=0.275 Sum_probs=82.3
Q ss_pred CceEEEccCCCCChhHHHHHHHHHHHHhhcCCCcccCCcCCCccchhhcccc-----CCCccccccEEEEEEeC--CeEE
Q 001893 791 DVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRN-----LRGQEFGGMYCAILTVN--SSVV 863 (999)
Q Consensus 791 di~W~LLsGk~as~E~~~~Ls~AL~If~EcFdPivD~~SGrDLIp~mVy~r~-----~~~~dF~G~y~~VL~~~--~~vV 863 (999)
.++|..+- .++...|.+..+.+.|-+-. |. |..-..-|..+ +...++.--|++.+.+. +++|
T Consensus 80 gf~W~tld-----v~~~~~l~el~~lL~enyVE--d~----~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLV 148 (421)
T KOG2779|consen 80 GFRWETLD-----VSDFKDLEELYNLLNENYVE--DD----DSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLV 148 (421)
T ss_pred CceeeccC-----CccHhHHHHHHhhcccCCCC--cc----ccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCceE
Confidence 47786542 23344566666666776622 22 22222223333 34455566788888765 4888
Q ss_pred EE-----EEEEEecC--ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCce------EEEEcchhhhHHHHHh
Q 001893 864 SA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK------SIVLPAAEEAESIWTD 926 (999)
Q Consensus 864 ga-----A~lrv~g~--d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~------~LvLpA~~eA~~~w~~ 926 (999)
|. +++||.+. ..+||-++.|++..|++++.=.|+.+|-+...-.||- -++||+-...-.-|-+
T Consensus 149 aFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HR 224 (421)
T KOG2779|consen 149 AFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHR 224 (421)
T ss_pred EEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhc
Confidence 75 46778775 6899999999999999999999999998876555543 3677776666666665
No 192
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=23.55 E-value=23 Score=31.99 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=21.0
Q ss_pred cceeEEeEEeeEEEEEEeccCCCCCCcc
Q 001893 41 CKRFKVTKVNGFIVYSRVKRSRFSNSDD 68 (999)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (999)
=-+|.|+ |||-+|||++...+|-+.+.
T Consensus 42 ~G~FEV~-v~g~lI~SK~~~g~fP~~~~ 68 (76)
T PF10262_consen 42 TGAFEVT-VNGELIFSKLESGRFPDPDE 68 (76)
T ss_dssp TT-EEEE-ETTEEEEEHHHHTSSS-HHH
T ss_pred CCEEEEE-EccEEEEEehhcCCCCCHHH
Confidence 3469985 89999999999999887655
No 193
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=23.54 E-value=53 Score=39.48 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=30.8
Q ss_pred ceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceE
Q 001893 874 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS 911 (999)
Q Consensus 874 d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~ 911 (999)
..|.|.+|.|+|+||+-|+|++-|.+..+...+..+..
T Consensus 240 aaariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPE 277 (593)
T COG2401 240 AAARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPE 277 (593)
T ss_pred hhhheeEEEeccccccCccchhHHHHHHHHHHHhhChh
Confidence 46888999999999999999988888777666555543
No 194
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=23.15 E-value=57 Score=42.52 Aligned_cols=48 Identities=31% Similarity=0.877 Sum_probs=37.3
Q ss_pred ccccccCCCCCCCCCCCCceecCCCCCCccCccccccccCCcccCCCCCcceecCCchhh
Q 001893 694 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 753 (999)
Q Consensus 694 ~C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL~p~~~~~LkelP~g~WfC~~~C~~I 753 (999)
.|..|.+.. .+..+ .|+.|...||..|+.+ ++..+|++.|.| ..|...
T Consensus 157 ~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~ 204 (904)
T KOG1246|consen 157 QCNTCSKGK------EEKLL-LCDSCDDSYHTYCLRP----PLTRVPDGDWRC-PKCIPT 204 (904)
T ss_pred hhhccccCC------Cccce-ecccccCcccccccCC----CCCcCCcCcccC-Cccccc
Confidence 377777643 33344 9999999999999997 678899999998 577644
No 195
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=22.12 E-value=34 Score=25.68 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=12.1
Q ss_pred cccccCCCCCCCCCCCCceecCCCCCCccCcccc
Q 001893 695 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCL 728 (999)
Q Consensus 695 C~vC~~~d~s~sg~~~~tLL~CDqCdraYHv~CL 728 (999)
|..|+... .......|.+|+-..|..|.
T Consensus 3 C~~C~~~~------~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 3 CDACGKPI------DGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp -TTTS----------S--EEE-TTT-----HHHH
T ss_pred CCcCCCcC------CCCceEECccCCCccChhcC
Confidence 77888653 22478899999999999873
No 196
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=22.07 E-value=33 Score=36.89 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=33.5
Q ss_pred ccccccccccCCCCeecccCCCCcCCccccc-CCC-------------CCCCCccccCcccccc
Q 001893 602 DNDDLCTICADGGNLLPCDGCPRAFHKECAS-LSS-------------IPQGDWYCKYCQNMFE 651 (999)
Q Consensus 602 ~ndd~C~VC~dgG~Ll~CD~CprafH~~CL~-l~~-------------vP~G~W~Cp~C~~~~~ 651 (999)
..+-.|.||.+.-.-.....|.+.|+..|+. +.. -..+...||.|+..+.
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3467799999865533445699999999984 210 0224578999997543
No 197
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.57 E-value=13 Score=34.39 Aligned_cols=31 Identities=26% Similarity=0.641 Sum_probs=23.9
Q ss_pred CCCCcCCccccc-CCCCCCCCccccCcccccc
Q 001893 621 GCPRAFHKECAS-LSSIPQGDWYCKYCQNMFE 651 (999)
Q Consensus 621 ~CprafH~~CL~-l~~vP~G~W~Cp~C~~~~~ 651 (999)
.|...||..|+. .-..|...-.||.|+..++
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 577899999994 5566666789999997653
No 198
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=20.86 E-value=1.4e+02 Score=32.96 Aligned_cols=41 Identities=10% Similarity=0.166 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhhhcCceEEEEcchhhhHHHHHhccCcEEc
Q 001893 892 YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (999)
Q Consensus 892 ~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 933 (999)
-...|+..|+++++..|..+|+.-+..++.++|.+ .||...
T Consensus 22 ~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~-~g~~~e 62 (266)
T TIGR03827 22 DVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEE-RGYLEE 62 (266)
T ss_pred cHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHH-CCCeEE
Confidence 36789999999999999999999999999999999 999988
No 199
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=20.42 E-value=5.3e+02 Score=28.76 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=45.1
Q ss_pred ccEEEEEEe-CCeEEEEEEEEEec-CceEEeeeeeeecCCcCCChhHHHHHHHHHHhhhcCceEEEEcch
Q 001893 850 GMYCAILTV-NSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA 917 (999)
Q Consensus 850 G~y~~VL~~-~~~vVgaA~lrv~g-~d~AEIp~VAT~~~~RgqG~gr~L~~~IE~~l~~lgV~~LvLpA~ 917 (999)
++..+|++. +|+++|.+.+-..+ .+.+-+-+.=.+++ --+|+-..|+..+-+.++..|++.|-|..+
T Consensus 179 ~~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~a 247 (299)
T PF09924_consen 179 GLRGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGFA 247 (299)
T ss_dssp T-EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE----
T ss_pred CceEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEcccc
Confidence 566667888 99999999988777 56565555555555 468899999999999999999999985554
Done!