Your job contains 1 sequence.
>001894
MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY
DKEKIVGMAAKCERLVAEISMERKMKSQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPL
NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV
HGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRVQ
QITGTTNNLQRRSGNVLPPPFDDYCHINSVSTAKPSVKNAANNTASISKDPIPNGSSARS
VALPAAASWGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPSVSTLHVDVV
KRPTVHEDSQITDSKSKSDISKPSRQHFGSEPPTPNGEPASVSLSNQASCPTKYTDKSLN
MPPNVIHSSDTTDHSCLSGPEKEENVTADVKMQGLCSDVSAMSIDRNATNEHSGVARASS
ALPDHGMMKLPRNQGLQPYNADLCREPLMSPETGKSITSKNDAFVSREPFDWRTDPTQAA
TDASPQEEEDVLSFDNQRLKDPEVVCRSNYLPKSANSLHVTNHSSSLKSNGYPEKLARNT
SGPGRAVENAFLLSNEGQRMPRELQGDANIDAAVDTGENSIISNILSMDFDTWDDPLALP
QNLAKLLSEPEKEPSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPK
SHSFNQDFAGNRDPLLDKLGLRNGFHPSSFEESDNFSSNHAVFSPNKLSVAARSQISAPP
GFSVPSRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRNTYQMQSVGNVGSTGDIEFMD
PAILAVGKGRLQSGLNNPGLDMRNNFPSQLNAFENEARLQLMMERSLSPHQNLRYANIGD
RLSPLNDSYGISSRLMDQPQANNLSPFAQLSIQQSRNPLISNGGHWDGWNEVQGGNSLGM
AELLRNERLGGFNKFYNGYEDSKFRMPSSGDIYNRTFGM
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001894
(999 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2085617 - symbol:AT3G45630 species:3702 "Arabi... 2219 5.3e-230 1
TAIR|locus:2056563 - symbol:AT2G28540 species:3702 "Arabi... 1148 1.6e-160 2
POMBASE|SPAC16C9.04c - symbol:mot2 "CCR4-Not complex subu... 510 1.2e-49 2
UNIPROTKB|F1MWA7 - symbol:CNOT4 "Uncharacterized protein"... 481 4.3e-49 3
UNIPROTKB|E2QXU7 - symbol:CNOT4 "Uncharacterized protein"... 480 5.6e-49 3
DICTYBASE|DDB_G0275005 - symbol:DDB_G0275005 "putative CC... 500 2.1e-47 5
UNIPROTKB|O95628 - symbol:CNOT4 "CCR4-NOT transcription c... 480 5.4e-47 2
UNIPROTKB|D4ADF8 - symbol:Cnot4 "RCG28297" species:10116 ... 486 1.1e-46 2
UNIPROTKB|E2QXU6 - symbol:CNOT4 "Uncharacterized protein"... 479 1.1e-46 2
MGI|MGI:1859026 - symbol:Cnot4 "CCR4-NOT transcription co... 486 2.0e-45 1
SGD|S000000870 - symbol:MOT2 "Ubiquitin-protein ligase su... 481 7.1e-45 1
UNIPROTKB|I3LC53 - symbol:LOC100622832 "Uncharacterized p... 479 1.2e-44 1
ZFIN|ZDB-GENE-090313-262 - symbol:si:dkey-230e6.2 "si:dke... 477 1.5e-44 4
ZFIN|ZDB-GENE-040426-1164 - symbol:zgc:63566 "zgc:63566" ... 501 1.5e-44 2
UNIPROTKB|F1MAD6 - symbol:Cnot4 "Protein Cnot4" species:1... 486 1.6e-44 2
UNIPROTKB|F8VQP3 - symbol:CNOT4 "CCR4-NOT transcription c... 480 3.5e-44 2
RGD|1310318 - symbol:Cnot4 "CCR4-NOT transcription comple... 482 4.6e-44 2
UNIPROTKB|E2QXU8 - symbol:CNOT4 "Uncharacterized protein"... 479 6.9e-44 2
UNIPROTKB|E1C4B3 - symbol:CNOT4 "Uncharacterized protein"... 480 1.6e-43 3
UNIPROTKB|Q5ZJC9 - symbol:CNOT4 "Uncharacterized protein"... 479 1.9e-43 3
CGD|CAL0000791 - symbol:NOT4 species:5476 "Candida albica... 417 1.6e-39 2
UNIPROTKB|Q59UI5 - symbol:NOT4 "Potential mRNA deadenylas... 417 1.6e-39 2
FB|FBgn0051716 - symbol:Cnot4 "Cnot 4 homologue" species:... 464 2.6e-39 2
WB|WBGene00003827 - symbol:ntl-4 species:6239 "Caenorhabd... 438 6.9e-38 3
TAIR|locus:2027262 - symbol:AT1G74870 species:3702 "Arabi... 161 9.9e-09 1
TAIR|locus:2097930 - symbol:AT3G48070 species:3702 "Arabi... 156 6.7e-08 1
TAIR|locus:2170708 - symbol:AT5G62910 species:3702 "Arabi... 155 7.1e-08 1
>TAIR|locus:2085617 [details] [associations]
symbol:AT3G45630 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 SMART:SM00184
SMART:SM00360 GO:GO:0009506 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
eggNOG:COG5175 EMBL:AL138657 HSSP:O95628 HOGENOM:HOG000085071
IPI:IPI00541447 PIR:T47503 RefSeq:NP_190149.1 UniGene:At.36006
ProteinModelPortal:Q9M1E4 SMR:Q9M1E4 IntAct:Q9M1E4
MINT:MINT-1366149 PaxDb:Q9M1E4 PRIDE:Q9M1E4
EnsemblPlants:AT3G45630.1 GeneID:823705 KEGG:ath:AT3G45630
TAIR:At3g45630 InParanoid:Q9M1E4 OMA:KPSAVEN PhylomeDB:Q9M1E4
ProtClustDB:CLSN2684762 Genevestigator:Q9M1E4 Uniprot:Q9M1E4
Length = 989
Score = 2219 (786.2 bits), Expect = 5.3e-230, P = 5.3e-230
Identities = 512/1025 (49%), Positives = 633/1025 (61%)
Query: 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60
MSD GEKTCPLCAEEMDLTDQQLKPCKCGY+ICVWCWHHIMDMAEK+++EGRCPACR+PY
Sbjct: 1 MSDYGEKTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPY 60
Query: 61 DKEKIVGMAAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPL 120
DKEKIVGM ERL +E +M+R L+SVRV+QRNLVYIVGLPL
Sbjct: 61 DKEKIVGMTVDQERLASEGNMDRKKIQKSKPKSSDGRKP--LTSVRVVQRNLVYIVGLPL 118
Query: 121 NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180
NL DEDLLQR+EYFGQYGKVLKVSMSRTA G+IQQFPNNTCSVYITY KEEEA+RCIQSV
Sbjct: 119 NLADEDLLQRKEYFGQYGKVLKVSMSRTATGLIQQFPNNTCSVYITYGKEEEAIRCIQSV 178
Query: 181 HGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRVQ 240
HGF+L+GK+LKACFGTTKYCHAWLRNV C N DCLYLHEVGSQEDSFTKDEIISA+TRVQ
Sbjct: 179 HGFILDGKALKACFGTTKYCHAWLRNVACNNQDCLYLHEVGSQEDSFTKDEIISAHTRVQ 238
Query: 241 QITGTTNNLQRRSGNVLPPPFDDYCHINSVSTAKPSVKNAANNTASISKDPIPNGSSARS 300
QITG TN +Q RSG++LPPP D Y + ST P K ++ + S K P+GSS +S
Sbjct: 239 QITGATNTMQYRSGSMLPPPLDAYT--SDSSTGNPIAKVPSSTSVSAPKSSPPSGSSGKS 296
Query: 301 VALPAAASWGMRASNQQSVATSACSNGP-SKQRPDTVGGALAFSSAV---ANTPSVSTLH 356
ALPAAASWG R +NQ S+ATSA SNG QR + G LA S+ V AN P VS+ +
Sbjct: 297 TALPAAASWGARLTNQHSLATSALSNGSLDNQRSTSENGTLATSTVVTKAANGP-VSSSN 355
Query: 357 VDVVKRPTVHEXXXXXXXXXXXXXXXXXRQHFGSEPPT-----PNGEPASVSLSNQASCP 411
+ K P + E +Q +P + PN +P+S NQ SC
Sbjct: 356 -SLQKAP-LKEEIQSLAEKSKPGVLKPLQQKIVLDPESKRTTSPNRDPSS----NQISC- 408
Query: 412 TKYTDKSLNMPPNVIHSSDTTDHSCLSGPEKEENVTADVKMQGLCSDVSAMSIDRNATNE 471
+ S N VI ++S E E+V DV L +DV+ M I N+ +E
Sbjct: 409 --LVESSYNS--RVIDKPSAVENSLEHTSEIAEDVF-DVGK--LSADVAWMGITTNSRDE 461
Query: 472 HSGVARASSALPDHGMMKLPRNQGLQPYNADLCREPLMSPETGKSITSKNDAFVSREPFD 531
GV D G + N +Q N + CR+ + ++ S N SR +D
Sbjct: 462 TPGVPVVIGTHCDLGSITQSDND-VQ--NLEQCRKQSPTNTYAEADISLNGIHGSRPEWD 518
Query: 532 WRTDPTQAATDAS-PQEEEDVLSFDNQRLKDPEVVCRSNYLPKSANSLHVTNHSSSLK-- 588
WR+ Q+ D P E D SF+N R E V S S+ S+ +NH +S
Sbjct: 519 WRSG-LQSQIDVKEPLEVNDFSSFNNNRRGIAEAVSHSTSKFSSSISILDSNHLASRSFQ 577
Query: 589 ----SNGYPEKLARNTS-GPGRA-VENAF---LLSNEGQRMPRELQGDANIDAAVDTGEN 639
S G K + G R + N F +SN + +G +NI +T E+
Sbjct: 578 NRETSCGMDSKTGSSFEIGSDRLHLPNGFSEKAMSNMEHSLFAN-EGRSNIQ---NT-ED 632
Query: 640 SIISNILSMDFDTWDDPLALPQNLAKLLSEPEKEPSSLKMSSSWKGHNHNQSRFSFARQE 699
IISNIL DFD WD+ L N AKLL + + S+L+ S+ K HN +QSRFSFAR E
Sbjct: 633 DIISNIL--DFDPWDESLTSQHNFAKLLGQSDHRASTLESSNLLKQHN-DQSRFSFARHE 689
Query: 700 ESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRDPLLDKLGLRNGFHPXXXXXXXXXXXX 759
ES S +DN RS+S + Q + Q+F NRD DKLG +NGF
Sbjct: 690 ESNSQAYDN-RSYSIYGQLSRDQPL-QEFGANRDMYQDKLGSQNGFASNYSGGYEQFATS 747
Query: 760 HAVFSPNKLSVAARSQISAPPGFSVPSRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLR 819
+ S S AR+Q+SAPPGFS P+R PPPGF+SH+R D S D SG LLDS++LLR
Sbjct: 748 PGLSSYK--SPVARTQVSAPPGFSAPNRLPPPGFSSHQRGDLSSDIASGTRLLDSANLLR 805
Query: 820 NTYQMQSV-GNVGSTGDIEFMDPAILAVGKGRLQSGLNNPGLDMRNNFPSQLNAFENEAR 878
N Y + GN+ + GDIEF+DPAILAVG+GRL +G+ D+R+ F SQLN+F+N+AR
Sbjct: 806 NAYHVPPPSGNLNAAGDIEFIDPAILAVGRGRLHNGMETADFDLRSGFSSQLNSFDNDAR 865
Query: 879 LQLMMERSLSPHQNLRY---ANIGDRLSPLNDSYGISSRLMDQPQANNLSPFAQLSIQQS 935
LQL+ +RSL+ Q + N+ + S +D YGISSR DQ Q LSPF QL Q S
Sbjct: 866 LQLLAQRSLAAQQVNGFHDPRNVNNFSSSFSDPYGISSRPTDQTQGTGLSPFTQLPRQAS 925
Query: 936 RNPLISNGGHWDG-WNEVQGGNSLGMAELLRNERLGGFNKFYNGYEDSKFRMPSSGDIYN 994
NPL+SNG HWD WNE Q GN+LG+ +LLRNER+G + Y+G+E+ KFR P GD YN
Sbjct: 926 ANPLLSNG-HWDNKWNEPQSGNNLGITQLLRNERMGFNDNVYSGFEEPKFRRPGPGDPYN 984
Query: 995 RTFGM 999
RT+G+
Sbjct: 985 RTYGI 989
>TAIR|locus:2056563 [details] [associations]
symbol:AT2G28540 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50089
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AK228764 IPI:IPI00540319
RefSeq:NP_001031437.2 UniGene:At.38609 ProteinModelPortal:Q0WQD5
SMR:Q0WQD5 PRIDE:Q0WQD5 EnsemblPlants:AT2G28540.2 GeneID:817402
KEGG:ath:AT2G28540 TAIR:At2g28540 HOGENOM:HOG000085071
InParanoid:Q0WQD5 OMA:RIIANIM PhylomeDB:Q0WQD5
ProtClustDB:CLSN2681703 Genevestigator:Q0WQD5 Uniprot:Q0WQD5
Length = 960
Score = 1148 (409.2 bits), Expect = 1.6e-160, Sum P(2) = 1.6e-160
Identities = 218/367 (59%), Positives = 273/367 (74%)
Query: 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60
M+++GEKTCPLC EEMDLTDQ LKPCKCGY+ICVWCWHHI++MAEK++TEGRCPACR+ Y
Sbjct: 1 MNEKGEKTCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRY 60
Query: 61 DKEKIVGMAAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPL 120
DKEKIVGM CERLVAE ++R L+ VRVIQRNLVY++ LP
Sbjct: 61 DKEKIVGMTVSCERLVAEFYIDRKKSQKAKPKPAEGRKD--LTGVRVIQRNLVYVMSLPF 118
Query: 121 NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180
+L DED+ QRREYFGQYGKV+KV+MSRTAAG +QQFPNNTCSVYITYSKEEEA+RCI+SV
Sbjct: 119 DLADEDMFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSV 178
Query: 181 HGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR-- 238
HGF+L+G++LKACFGT KYCHAWLRN+PC+N +CLYLHE+G+QEDSF+KDE ISA+ R
Sbjct: 179 HGFILDGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKM 238
Query: 239 VQQITGTTNNLQRRSGNVLPPPFDDYCHINSVSTAKPSVKNAANNTASISKDPIPNGSSA 298
VQ ITG ++ RRSG++LPPP DDY +++ S+ + K NN S +K+ PN S++
Sbjct: 239 VQDITGWRDHYVRRSGSMLPPPVDDY--VDNESSTRIIPKVVLNNVHSAAKNSPPNDSNS 296
Query: 299 RSVALPAAASWGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPSVSTLHVD 358
SV LPA A WGM +S V + S P + + TV SSAVA P+ + D
Sbjct: 297 HSVTLPAGAMWGMHSS----VPNTPSSREPLRDKSATV------SSAVAINPTQISSRSD 346
Query: 359 VVKRPTV 365
+++P +
Sbjct: 347 ELRKPAL 353
Score = 437 (158.9 bits), Expect = 1.6e-160, Sum P(2) = 1.6e-160
Identities = 137/404 (33%), Positives = 197/404 (48%)
Query: 589 SNGYPEKLARNTSGPGRAVENAFLLSNEGQ-RMPRELQGDANIDAAVDTGE--NSIISNI 645
SNGY E + ++ ++ L+ ++ + P E + +D+ E + II+NI
Sbjct: 589 SNGYTEMPLSEPNQLNGSLNHSILVPDKARDTQPIE---NCFVDSHESPSEIDDRIIANI 645
Query: 646 LSMDFDTWDDPLALPQNLAKLLSEPEKEPSSLKMSSSWKGHNHNQSRFSFARQEESRSHT 705
+S+D D + L P N A E ++E SLK++SS K + NQSRFSFARQEE +
Sbjct: 646 MSLDLDEY---LTSPHNYANPFGESDEEARSLKLASSSKVED-NQSRFSFARQEEPKDQA 701
Query: 706 FDNERSFSGFIQQPKSHSFNQDFAGNRDPLLDKLGLRNGFHPXXXXXXXXXXXXHAVFSP 765
FD S++ Q + + F Q+ + + P + G NG + S
Sbjct: 702 FD---SYNASNQMSRGNDFYQNSSERQSPNMGMFGTYNGLSSCYRRGLDYVTESSTLPSS 758
Query: 766 NKLSVAARSQISAPPGFSVP--SRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRNTYQ 823
K + R +SAPPGFSVP SR PPPGF+S+ R Q D SGN S N YQ
Sbjct: 759 YKPTSVPRCPVSAPPGFSVPTPSRPPPPGFSSNGRDHQMIDGFSGNSRFSDSIAYGNHYQ 818
Query: 824 MQSVGNVGSTGDIEFMDPAILAVGKGRLQSGLNNPGLDMRNNFPSQLNAFENEARLQ--- 880
QS+ + + D+++MDPAILAVG+G N LD R+NF N + + A+LQ
Sbjct: 819 -QSLP-IENVRDVQYMDPAILAVGQG-----FENASLDFRSNFQGNTNMYGSAAKLQQQQ 871
Query: 881 --------LMMERSLSPHQNLRYANIGDRLSPLNDSYGISSRLMDQPQANNLSPFAQLSI 932
L M+ LS HQN R+ DS G++ R +DQ Q NNL
Sbjct: 872 QQAVMQNPLSMQNPLSSHQNCRFT----------DSLGMAPRFIDQSQGNNLL------- 914
Query: 933 QQSRNPLISNGGHWDGW--NEVQGGNSLGMAELLRNER-LGGFN 973
+RN + NG HW+G NE+Q N L L+ + + G+N
Sbjct: 915 --TRNMALPNG-HWNGLMSNEIQTRNRLQNERLVGSTNWIPGYN 955
Score = 40 (19.1 bits), Expect = 1.4e-118, Sum P(2) = 1.4e-118
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 398 EPASVSLSNQASCPTKYTDKSLNMPPNVIHSSDTTDHSCLSG 439
+P SV S P ++ + + PP SS+ DH + G
Sbjct: 760 KPTSVPRC-PVSAPPGFSVPTPSRPPPPGFSSNGRDHQMIDG 800
Score = 38 (18.4 bits), Expect = 2.2e-118, Sum P(2) = 2.2e-118
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 855 LNNPGLDMRNNFPSQLNAFENEARLQLMMERSLSPHQNLRYANIGDRLSPLNDSY--GIS 912
++N +M + P+QLN N + L R P +N + + + S ++D I
Sbjct: 588 ISNGYTEMPLSEPNQLNGSLNHSILVPDKARDTQPIENC-FVDSHESPSEIDDRIIANIM 646
Query: 913 SRLMDQ----PQANNLSPFAQLSIQQSRN 937
S +D+ P N +PF + S +++R+
Sbjct: 647 SLDLDEYLTSPH-NYANPFGE-SDEEARS 673
>POMBASE|SPAC16C9.04c [details] [associations]
symbol:mot2 "CCR4-Not complex subunit Mot2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=ISO]
[GO:0030014 "CCR4-NOT complex" evidence=ISO] [GO:0030015 "CCR4-NOT
core complex" evidence=NAS] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00361 PomBase:SPAC16C9.04c Prosite:PS00518
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006357
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0006368 GO:GO:0004842 GO:GO:0000289 GO:GO:0030015
eggNOG:COG5175 HOGENOM:HOG000248860 OrthoDB:EOG42RHH7 PIR:T37777
RefSeq:NP_593078.1 ProteinModelPortal:Q09818 SMR:Q09818
STRING:Q09818 PRIDE:Q09818 EnsemblFungi:SPAC16C9.04c.1
GeneID:2542325 KEGG:spo:SPAC16C9.04c NextBio:20803386
Uniprot:Q09818
Length = 489
Score = 510 (184.6 bits), Expect = 1.2e-49, Sum P(2) = 1.2e-49
Identities = 96/241 (39%), Positives = 146/241 (60%)
Query: 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62
DE + CPLC EE+D++D+ KPC+CGY +C +CWHHI KE+ GRCPACR Y +
Sbjct: 12 DEDDMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHI-----KEDLNGRCPACRRLYTE 66
Query: 63 EKIVGMAAKCERLVAEISMERXXXXXXXXXXXXXXXXXX-LSSVRVIQRNLVYIVGLPLN 121
E + E ++ + L+++RV+Q+NL Y+ GL
Sbjct: 67 ENVQWRPVTAEEWKMDLHRKNERKKREKERKEVELSNRKHLANIRVVQKNLAYVNGLSPK 126
Query: 122 LGDED---LLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQ 178
+ +E+ +L+ EYFGQYGK++K+++++ AA N VYITY ++E+A R I
Sbjct: 127 VANEENINVLKGPEYFGQYGKIIKIAINKKAAA---NSANGHVGVYITYQRKEDAARAIA 183
Query: 179 SVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA-YT 237
++ G V +G+ L+A +GTTKYC ++LRN C NP C+YLHE G + DS+TK+++ S +T
Sbjct: 184 AIDGSVSDGRHLRASYGTTKYCTSYLRNQQCPNPSCMYLHEPGDEVDSYTKEDLASLQHT 243
Query: 238 R 238
R
Sbjct: 244 R 244
Score = 41 (19.5 bits), Expect = 1.2e-49, Sum P(2) = 1.2e-49
Identities = 26/104 (25%), Positives = 41/104 (39%)
Query: 269 SVSTAKPSVKNAANNTASISKDPIPNGSSA-----RSVALPAAASWGMRASNQQSVATSA 323
S+ST + A +++ S + +P ++ S ALP A+W A SV
Sbjct: 307 SLSTNNTATSVPAPYSSAASVNVVPGHATTILHHEESSALPPTAAW---AKLSPSVLQER 363
Query: 324 CSNGPSKQRPDTVGGALAFSSAVANTPSVSTLHVDVVKRPTVHE 367
++Q D AL SS + P + L K P+ E
Sbjct: 364 LRAAVNQQPLD----ALKSSSTQTSIPKIQKLKA--AKLPSEEE 401
>UNIPROTKB|F1MWA7 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 OMA:KCRICPT EMBL:DAAA02011636
EMBL:DAAA02011637 EMBL:DAAA02011638 EMBL:DAAA02011639
IPI:IPI00708734 UniGene:Bt.26972 Ensembl:ENSBTAT00000023825
Uniprot:F1MWA7
Length = 642
Score = 481 (174.4 bits), Expect = 4.3e-49, Sum P(3) = 4.3e-49
Identities = 122/363 (33%), Positives = 191/363 (52%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTR--VQQI 242
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQEL 244
Query: 243 TGTTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN- 294
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 245 YKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSL-SIGNG-DNSQQISNSDTPSP 302
Query: 295 --GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPS 351
G S + +P ++S R+ + +V S + + P+ + L +TP
Sbjct: 303 PPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLP---PFPSTPQ 359
Query: 352 VST 354
S+
Sbjct: 360 TSS 362
Score = 45 (20.9 bits), Expect = 4.3e-49, Sum P(3) = 4.3e-49
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 779 PPGFSVPSRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRN 820
PP +PPPGF + R T LL SS+L R+
Sbjct: 605 PPSNPSSFHSPPPGFQTAFRPPSKTPT----DLLQSSTLDRH 642
Score = 41 (19.5 bits), Expect = 4.3e-49, Sum P(3) = 4.3e-49
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 648 MDFDTWD-DPLALPQNLAKLLS---EPEKEPSSLKMSSS 682
+ FD +D AL + K LS +P P+SL+ SSS
Sbjct: 403 LGFDPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSS 441
Score = 38 (18.4 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 777 SAPPGFSVPSRAPPPGFTSHERVDQS 802
S PPGF R PP T + + S
Sbjct: 614 SPPPGFQTAFR--PPSKTPTDLLQSS 637
>UNIPROTKB|E2QXU7 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 EMBL:AAEX03010245
Ensembl:ENSCAFT00000005178 Uniprot:E2QXU7
Length = 642
Score = 480 (174.0 bits), Expect = 5.6e-49, Sum P(3) = 5.6e-49
Identities = 119/349 (34%), Positives = 186/349 (53%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTR--VQQI 242
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQEL 244
Query: 243 TGTTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN- 294
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 245 YKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSL-SIGNG-DNSQQISNSDTPSP 302
Query: 295 --GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGAL 340
G S + +P ++S R+ + +V S + + P+ + L
Sbjct: 303 PPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGL 351
Score = 45 (20.9 bits), Expect = 5.6e-49, Sum P(3) = 5.6e-49
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 779 PPGFSVPSRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRN 820
PP +PPPGF + R T LL SS+L R+
Sbjct: 605 PPSNPSSFHSPPPGFQTAFRPPSKTPT----DLLQSSTLDRH 642
Score = 45 (20.9 bits), Expect = 8.7e-47, Sum P(2) = 8.7e-47
Identities = 38/138 (27%), Positives = 46/138 (33%)
Query: 674 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 733
PSS + SS W QS F+ S S + F G +QP+ F R
Sbjct: 355 PSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGF-GSSKQPEDDLGFDPFDVTRK 413
Query: 734 PLLDKLG--LRNGFHPXXXXXXXXXXXXHAVFS--PNK--LSVAARSQI-SAPPGFSV-P 785
L D + L P H + P L AA + S FSV P
Sbjct: 414 ALADLIEKELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAPTNANSLNSTFSVLP 473
Query: 786 SRAPPPGFTSHERVDQSF 803
R P F H V SF
Sbjct: 474 QRFPQ--FQQHRAVYNSF 489
Score = 41 (19.5 bits), Expect = 5.6e-49, Sum P(3) = 5.6e-49
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 648 MDFDTWD-DPLALPQNLAKLLS---EPEKEPSSLKMSSS 682
+ FD +D AL + K LS +P P+SL+ SSS
Sbjct: 403 LGFDPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSS 441
Score = 38 (18.4 bits), Expect = 3.0e-48, Sum P(3) = 3.0e-48
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 777 SAPPGFSVPSRAPPPGFTSHERVDQS 802
S PPGF R PP T + + S
Sbjct: 614 SPPPGFQTAFR--PPSKTPTDLLQSS 637
>DICTYBASE|DDB_G0275005 [details] [associations]
symbol:DDB_G0275005 "putative CCR4-NOT complex
subunit 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030015 "CCR4-NOT
core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50102
SMART:SM00184 SMART:SM00360 dictyBase:DDB_G0275005 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000012 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0030015 eggNOG:COG5175 RefSeq:XP_644313.1
ProteinModelPortal:Q554L0 SMR:Q554L0 EnsemblProtists:DDB0237630
GeneID:8619741 KEGG:ddi:DDB_G0275005 OMA:QEHPHLP Uniprot:Q554L0
Length = 1486
Score = 500 (181.1 bits), Expect = 2.1e-47, Sum P(5) = 2.1e-47
Identities = 119/367 (32%), Positives = 196/367 (53%)
Query: 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60
MSDE + +CPLC +E+ D++ +PC CGY+ICV+C+ I +E + RCPACR Y
Sbjct: 1 MSDE-DNSCPLCLDELSKADRKFRPCPCGYQICVFCFERI-----RESEQNRCPACRKTY 54
Query: 61 DKEKIVGMAAKCERLVAEISME----------------RXXXXXXXXXXXXXXXXXXLSS 104
D +++ E E E L++
Sbjct: 55 DSVNFSVISSDEEEEEDEDDEEDDSEDDGQDRRRNRKYNGVNSLNNSLDYTKRGDKPLNT 114
Query: 105 VRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTC-SV 163
VRVIQRNLVY+ L +++ ++L++ EYF QYGK+LK+ ++R + P+ C S
Sbjct: 115 VRVIQRNLVYVTNLAISIAKPEILKKNEYFAQYGKILKIVINRNNIYNLNS-PHGACVSA 173
Query: 164 YITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQ 223
YITY+++E+A+ IQ++ G +EG+ L+A FGTTKYC +LR +PC NPDC+YLHE+G +
Sbjct: 174 YITYARKEDALVAIQTIDGATIEGRVLRASFGTTKYCSYFLRKLPCNNPDCMYLHELGQE 233
Query: 224 EDSFTKDEIISAYTRVQQITGTTNNLQRRSGNVLPPPFDDYCHINSVSTAKPSVKNAAN- 282
+DS+TK++I S + T + S VL P ++S +++ ++ N+++
Sbjct: 234 DDSYTKEDITSTAVYKPKPTQQPTPWKESSEKVLASP-----SLSSSTSSTNNMSNSSSF 288
Query: 283 ---NTASISKDPI--------PNGSSARSVA---LPAAASWGMRASNQQSVATSACSNGP 328
N +++S P+ P+ + A S+A LP+ +S + S ++ + S G
Sbjct: 289 KTWNISNVSPQPVTVLNPLEWPSATDASSMAPAILPSGSSPPLSKSQERPFLPATASWGQ 348
Query: 329 S--KQRP 333
+ Q+P
Sbjct: 349 NIINQKP 355
Score = 87 (35.7 bits), Expect = 2.1e-47, Sum P(5) = 2.1e-47
Identities = 38/127 (29%), Positives = 53/127 (41%)
Query: 779 PPGFSVPSRAPPPGFTSHERVDQSFDTLS---------GNHLLDSSSLLRNTYQMQSVGN 829
PPGF + PPPGF S+ + + S GN L +SSS + + V N
Sbjct: 1089 PPGFQ--NIIPPPGFQSNNNTTTTNNNNSTNNNNNNNNGNSLNNSSSTINGNQLLSMVNN 1146
Query: 830 VGSTGDIEFMDPAILAVGKGRLQSGLNNPGLDMRN--NFPSQLNAFENEARLQLMMERSL 887
+G F+DP+ L S +N L M N N + N E E QL ++ L
Sbjct: 1147 GLMSGPTPFVDPSNL------FDSQYDNDMLAMENIKNKDKKKNKEEQEQE-QLQLQHQL 1199
Query: 888 SPHQNLR 894
Q L+
Sbjct: 1200 HQQQMLQ 1206
Score = 70 (29.7 bits), Expect = 8.2e-46, Sum P(4) = 8.2e-46
Identities = 44/169 (26%), Positives = 68/169 (40%)
Query: 769 SVAARSQISAPPGFSVPSRAPPPGFTSHERVDQSFDTLSGNH-------LLDSSSLLRNT 821
SV +S+ + S P F S + TLS H L+S S++ N+
Sbjct: 787 SVDTTGSLSSSTN-NTASLITPDMFFSIQSEQYQLPTLSSLHHPNGVEPTLNSQSIIENS 845
Query: 822 YQMQSVGNVG---STGDIEFMDPAILAVGKGRL--QSGLNNPGLDMRNNFPSQLNAFENE 876
+ VGN S +I ++ G L + NN + NN S N ENE
Sbjct: 846 LNLNLVGNRSLNNSQNNINNQTNSLNNSGSNNLIFNNDYNNNNNNNNNN-NSFSNNIENE 904
Query: 877 ARLQLMMERSLSPHQNLRYANIGDRLS-P-LNDSYGISSRLMDQPQANN 923
Q RSL P N+R++ ++S P LN + ++ ++ NN
Sbjct: 905 DSSQQFF-RSLFPSVNIRFSFPNQQVSQPSLNGNNSNNNININNNNTNN 952
Score = 58 (25.5 bits), Expect = 2.0e-44, Sum P(5) = 2.0e-44
Identities = 25/114 (21%), Positives = 42/114 (36%)
Query: 768 LSVAARSQISAPPGFS-----VPSRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRNTY 822
L + S +S PPGF P PPPGF F + S++ T
Sbjct: 1053 LRKSVTSSVSPPPGFGGFDSQKPMVNPPPGFAPTPP-PPGFQNIIPPPGFQSNNNTTTTN 1111
Query: 823 QMQSVGNVGSTGDIEFMDPAILAVGKGRLQSGLNNPGLDMRNNFPSQLNAFENE 876
S N + + ++ + + +L S +NN + F N F+++
Sbjct: 1112 NNNSTNNNNNNNNGNSLNNSSSTINGNQLLSMVNNGLMSGPTPFVDPSNLFDSQ 1165
Score = 57 (25.1 bits), Expect = 9.6e-44, Sum P(3) = 9.6e-44
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 391 EPPT-PNGE---PASVSLSNQASCPTKYTDKSLNMPPNVIHSSDTTDHSCLSGPEKEENV 446
+PP PNG P L Q P + + + N P N +SS+ ++S ++ +
Sbjct: 1374 QPPIIPNGNLRPPGMTQLGYQQIPPGMHNNNN-NNPNNNSNSSNNNNNSNFIDFLRQSGI 1432
Query: 447 TA--DVKMQGLCSDVSAMSIDRNATNEHSGVARASSALPD 484
T DV G+ + S ++ +++ EH VA + L D
Sbjct: 1433 TMNDDVNSSGMMTPSSLLN---DSSLEHR-VASTNKELKD 1468
Score = 50 (22.7 bits), Expect = 2.1e-47, Sum P(5) = 2.1e-47
Identities = 22/86 (25%), Positives = 34/86 (39%)
Query: 401 SVSLSNQASCPTKYTDKSLNMPPNVIHSSDTTDHSCLSG--PEKEENVTADVKMQGLCSD 458
+V+ PT+ T+ + + PP+ +S T + LS PEK + D
Sbjct: 728 TVTAPTPTPTPTQTTNSASSPPPSSSSTSSPTSTANLSTNPPEKRSRSRFE-----FAKD 782
Query: 459 VSAMSIDRNATNEHSGVARASSALPD 484
S S+D + S AS PD
Sbjct: 783 SSRNSVDTTGSLSSSTNNTASLITPD 808
Score = 48 (22.0 bits), Expect = 2.3e-47, Sum P(4) = 2.3e-47
Identities = 35/145 (24%), Positives = 51/145 (35%)
Query: 581 TNHSSSLKSNGYPEKLARNTSGPGRAVENAFLLSNEGQRMPR-----ELQGDANIDAAVD 635
TN SSS + A NT+ S+ P+ L D N
Sbjct: 654 TNFSSSTAAAS-STTTASNTNPTATTTTTTTTTSSSSPPQPQLQPSSPLSEDKNKSPPTQ 712
Query: 636 TGENSIISNILS-MDFDTWDDPLALPQNLAKLLSEPEKEPSSLKMSSSWKGHNHN----- 689
E +I+ +S ++ T P P S P SS +S + N
Sbjct: 713 PLEELVIAETISTINTVTAPTPTPTPTQTTNSASSPPPSSSSTSSPTSTANLSTNPPEKR 772
Query: 690 -QSRFSFARQEESRSHTFDNERSFS 713
+SRF FA+ + SR+ + D S S
Sbjct: 773 SRSRFEFAK-DSSRN-SVDTTGSLS 795
Score = 47 (21.6 bits), Expect = 2.6e-43, Sum P(5) = 2.6e-43
Identities = 13/68 (19%), Positives = 31/68 (45%)
Query: 841 PAILAVGKGRLQSGLNNPGLDMRNNFPSQLNAFENEARLQLMMERSLSPHQNLRYANIGD 900
P + +G ++ G++N + NN + N N + + + ++ + ++ + +
Sbjct: 1386 PGMTQLGYQQIPPGMHNNNNNNPNNNSNSSNNNNNSNFIDFLRQSGITMNDDVNSSGMMT 1445
Query: 901 RLSPLNDS 908
S LNDS
Sbjct: 1446 PSSLLNDS 1453
Score = 40 (19.1 bits), Expect = 2.1e-47, Sum P(5) = 2.1e-47
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 312 RASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPSVST 354
++S++Q+ T+ N S P +A ++ NT + +T
Sbjct: 545 KSSSKQTTPTNTTPNITSTTPPTNNNNTIATTTNTTNTTTNTT 587
Score = 40 (19.1 bits), Expect = 2.2e-46, Sum P(5) = 2.2e-46
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 390 SEPPTPNGEPAS-VSLSNQASCPTK 413
S PP P +P+S +S S PT+
Sbjct: 688 SSPPQPQLQPSSPLSEDKNKSPPTQ 712
Score = 39 (18.8 bits), Expect = 2.1e-47, Sum P(5) = 2.1e-47
Identities = 21/93 (22%), Positives = 36/93 (38%)
Query: 553 SFDNQRLKDPEVVCRSNYLPKSANSLHVTNHSSSLKSNGYPEKLARNTSGPGRAVENAFL 612
SF NQ++ P + ++ + N+ + N++S+ +N N + N
Sbjct: 923 SFPNQQVSQPSLNGNNSNNNININNNNTNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNS 982
Query: 613 LSNEGQRMPRELQGDANIDAAVDTG-ENSIISN 644
N P E G ++I D NS SN
Sbjct: 983 SINMNDFPPLESSG-SSIKTFQDPAIVNSYKSN 1014
>UNIPROTKB|O95628 [details] [associations]
symbol:CNOT4 "CCR4-NOT transcription complex subunit 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0051865 "protein autoubiquitination" evidence=IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00360 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0005829 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0051865 GO:GO:0000289 EMBL:U71267 EMBL:U71268
EMBL:AF180475 EMBL:AL389980 EMBL:AK074671 EMBL:AK300365
EMBL:AC083871 EMBL:AC074002 EMBL:BC035590 EMBL:AF091094
IPI:IPI00002436 IPI:IPI00410681 IPI:IPI00410682 IPI:IPI00410683
IPI:IPI00410684 IPI:IPI00410685 IPI:IPI00410686 IPI:IPI00925697
IPI:IPI01026266 RefSeq:NP_001008226.1 RefSeq:NP_001177776.1
RefSeq:NP_001177777.1 RefSeq:NP_001177779.1 RefSeq:NP_037448.2
UniGene:Hs.490224 PDB:1E4U PDB:1UR6 PDBsum:1E4U PDBsum:1UR6
ProteinModelPortal:O95628 SMR:O95628 IntAct:O95628 STRING:O95628
PhosphoSite:O95628 PaxDb:O95628 PRIDE:O95628
Ensembl:ENST00000315544 Ensembl:ENST00000356162
Ensembl:ENST00000361528 Ensembl:ENST00000414802
Ensembl:ENST00000423368 Ensembl:ENST00000428680
Ensembl:ENST00000451834 GeneID:4850 KEGG:hsa:4850 UCSC:uc003vss.3
UCSC:uc003vst.3 UCSC:uc003vsu.2 UCSC:uc003vsv.2 CTD:4850
GeneCards:GC07M135046 H-InvDB:HIX0007112 HGNC:HGNC:7880
HPA:HPA005737 MIM:604911 neXtProt:NX_O95628 PharmGKB:PA26675
eggNOG:COG5175 HOVERGEN:HBG051043 EvolutionaryTrace:O95628
GenomeRNAi:4850 NextBio:18678 ArrayExpress:O95628 Bgee:O95628
CleanEx:HS_CNOT4 Genevestigator:O95628 GermOnline:ENSG00000080802
Uniprot:O95628
Length = 575
Score = 480 (174.0 bits), Expect = 5.4e-47, Sum P(2) = 5.4e-47
Identities = 119/349 (34%), Positives = 186/349 (53%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTR--VQQI 242
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQEL 244
Query: 243 TGTTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN- 294
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 245 YKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSL-SIGNG-DNSQQISNSDTPSP 302
Query: 295 --GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGAL 340
G S + +P ++S R+ + +V S + + P+ + L
Sbjct: 303 PPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGL 351
Score = 47 (21.6 bits), Expect = 5.4e-47, Sum P(2) = 5.4e-47
Identities = 37/138 (26%), Positives = 45/138 (32%)
Query: 674 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 733
PSS + SS W QS F+ S S + F G +QP+ F R
Sbjct: 355 PSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGF-GSSKQPEDDLGFDPFDVTRK 413
Query: 734 PLLDKLG--LRNGFHPXXXXXXXXXXXXHAVFSPNKLS-----VAARSQISAPPGFSV-P 785
L D + L P H + S AA + S FSV P
Sbjct: 414 ALADLIEKELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLP 473
Query: 786 SRAPPPGFTSHERVDQSF 803
R P F H V SF
Sbjct: 474 QRFPQ--FQQHRAVYNSF 489
Score = 41 (19.5 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 648 MDFDTWD-DPLALPQNLAKLLS---EPEKEPSSLKMSSS 682
+ FD +D AL + K LS +P P+SL+ SSS
Sbjct: 403 LGFDPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSS 441
>UNIPROTKB|D4ADF8 [details] [associations]
symbol:Cnot4 "RCG28297" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00360 RGD:1310318 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:CH473959 IPI:IPI00373484 UniGene:Rn.203387
Ensembl:ENSRNOT00000014392 Uniprot:D4ADF8
Length = 575
Score = 486 (176.1 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 122/360 (33%), Positives = 190/360 (52%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTR--VQQI 242
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQEL 244
Query: 243 TGTTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN- 294
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 245 YKLNPNFLQLSTGSVDKNKNKVTPLQRYDVPIDKPSDSL-SIGNG-DNSQQISNSDTPSP 302
Query: 295 --GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPS 351
G S + +P ++S R+ + +V S + + P+ + L + TPS
Sbjct: 303 PPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTPS 362
Score = 38 (18.4 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 689 NQSRFSFARQEESRSHTFDNERSFSGFIQQ--P-KSHSFNQDFA 729
+Q S + S SHT + SGF+ P ++S N F+
Sbjct: 427 DQPSLSSTSLQNSSSHTTSAKGPGSGFLHPAAPANANSLNSTFS 470
>UNIPROTKB|E2QXU6 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 GeneTree:ENSGT00390000000068
EMBL:AAEX03010245 RefSeq:XP_859452.1 Ensembl:ENSCAFT00000005180
GeneID:482708 KEGG:cfa:482708 Uniprot:E2QXU6
Length = 572
Score = 479 (173.7 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 93/224 (41%), Positives = 136/224 (60%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEI 232
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEM 228
Score = 45 (20.9 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 38/138 (27%), Positives = 46/138 (33%)
Query: 674 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 733
PSS + SS W QS F+ S S + F G +QP+ F R
Sbjct: 352 PSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGF-GSSKQPEDDLGFDPFDVTRK 410
Query: 734 PLLDKLG--LRNGFHPXXXXXXXXXXXXHAVFS--PNK--LSVAARSQI-SAPPGFSV-P 785
L D + L P H + P L AA + S FSV P
Sbjct: 411 ALADLIEKELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAPTNANSLNSTFSVLP 470
Query: 786 SRAPPPGFTSHERVDQSF 803
R P F H V SF
Sbjct: 471 QRFPQ--FQQHRAVYNSF 486
Score = 41 (19.5 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 648 MDFDTWD-DPLALPQNLAKLLS---EPEKEPSSLKMSSS 682
+ FD +D AL + K LS +P P+SL+ SSS
Sbjct: 400 LGFDPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSS 438
Score = 37 (18.1 bits), Expect = 7.7e-46, Sum P(2) = 7.7e-46
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 273 AKPSVKNAANNTASISKDPIPNGSSARSV 301
A P+ N+ N+T S+ P R+V
Sbjct: 454 AAPTNANSLNSTFSVLPQRFPQFQQHRAV 482
>MGI|MGI:1859026 [details] [associations]
symbol:Cnot4 "CCR4-NOT transcription complex, subunit 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051865 "protein autoubiquitination"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
MGI:MGI:1859026 Prosite:PS00518 GO:GO:0005634 GO:GO:0005737
GO:GO:0006355 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0051865
CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043 EMBL:U71269
EMBL:AK009234 EMBL:AK028190 EMBL:AK032248 EMBL:BC058778
IPI:IPI00130086 IPI:IPI00410929 IPI:IPI00410930
RefSeq:NP_001157883.1 RefSeq:NP_001157885.1 RefSeq:NP_058573.3
UniGene:Mm.214525 UniGene:Mm.398182 PDB:2CPI PDBsum:2CPI
ProteinModelPortal:Q8BT14 SMR:Q8BT14 STRING:Q8BT14
PhosphoSite:Q8BT14 PaxDb:Q8BT14 PRIDE:Q8BT14
Ensembl:ENSMUST00000044163 Ensembl:ENSMUST00000114993 GeneID:53621
KEGG:mmu:53621 UCSC:uc009bid.2 UCSC:uc009big.2
GeneTree:ENSGT00390000000068 HOGENOM:HOG000065696 ChiTaRS:CNOT4
EvolutionaryTrace:Q8BT14 NextBio:310353 Bgee:Q8BT14
CleanEx:MM_CNOT4 Genevestigator:Q8BT14
GermOnline:ENSMUSG00000038784 Uniprot:Q8BT14
Length = 575
Score = 486 (176.1 bits), Expect = 2.0e-45, P = 2.0e-45
Identities = 122/360 (33%), Positives = 190/360 (52%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTR--VQQI 242
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQEL 244
Query: 243 TGTTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN- 294
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 245 YKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSL-SIGNG-DNSQQISNSDTPSP 302
Query: 295 --GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPS 351
G S + +P ++S R+ + +V S + + P+ + L + TPS
Sbjct: 303 PPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTPS 362
>SGD|S000000870 [details] [associations]
symbol:MOT2 "Ubiquitin-protein ligase subunit of the CCR4-NOT
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000209
"protein polyubiquitination" evidence=IMP;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0016567 "protein ubiquitination" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030015 "CCR4-NOT core complex" evidence=IPI]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IMP;IDA;IPI] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00361
SGD:S000000870 Prosite:PS00518 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 EMBL:BK006939
EMBL:U18813 RefSeq:NP_010991.3 GeneID:856799 KEGG:sce:YER068W
KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000209 GO:GO:0032968 GO:GO:0030015 eggNOG:COG5175
GeneTree:ENSGT00390000000068 GO:GO:0031087 EMBL:M96736 EMBL:L26309
PIR:A56015 RefSeq:NP_010994.3 ProteinModelPortal:P34909 SMR:P34909
DIP:DIP-2255N IntAct:P34909 MINT:MINT-617490 STRING:P34909
PaxDb:P34909 PeptideAtlas:P34909 EnsemblFungi:YER068W GeneID:856802
KEGG:sce:YER071C CYGD:YER068w HOGENOM:HOG000248860 OMA:DEEDYCP
OrthoDB:EOG42RHH7 NextBio:983041 Genevestigator:P34909
GermOnline:YER068W Uniprot:P34909
Length = 587
Score = 481 (174.4 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 121/383 (31%), Positives = 187/383 (48%)
Query: 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60
+S++ E CPLC E MD+TD+ PC CGY+IC +C+++I + E GRCPACR Y
Sbjct: 25 LSEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIR---QNPELNGRCPACRRKY 81
Query: 61 DKEKI--VGMAA---KCERL-VAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVY 114
D E + V ++ K ER +A ER LS RVIQ+NLVY
Sbjct: 82 DDENVRYVTLSPEELKMERAKLARKEKERKHREKERKENEYTNRKH-LSGTRVIQKNLVY 140
Query: 115 IVGLPLNLGDEDL---LQRREYFGQYGKVLKVSMSRTAAG----VIQQFPNNT--CSVYI 165
+VG+ + E++ L+ +YFGQYGK+ K+ ++R + + +++ VYI
Sbjct: 141 VVGINPPVPYEEVAPTLKSEKYFGQYGKINKIVVNRKTPHSNNTTSEHYHHHSPGYGVYI 200
Query: 166 TYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED 225
T+ +++A RCI V G ++G+ +KA +GTTKYC ++LR +PC NP+C++LHE G + D
Sbjct: 201 TFGSKDDAARCIAQVDGTYMDGRLIKAAYGTTKYCSSYLRGLPCPNPNCMFLHEPGEEAD 260
Query: 226 SFTKDEIISAYTRVQQITGTTNNLQRRSGNVLPPPFDDYCHI---NSVSTAKPSVKNA-- 280
SF K E+ + QQ GT N+ ++ N T P+ A
Sbjct: 261 SFNKRELHNKQQAQQQSGGTAFTRSGIHNNISTSTAGSNTNLLSENFTGTPSPAAMRAQL 320
Query: 281 -----AN-NTASISKDPIPNGSSARSVALPAAASWGMRAS-NQQSVATSACSNGPSKQRP 333
N T ++ P+P GS+ V A + S N S+ ++
Sbjct: 321 HHDSHTNAGTPVLTPAPVPAGSNPWGVTQSATPVTSINLSKNSSSINLPTLNDSLGHHTT 380
Query: 334 DTVGGALAFSSAVANTPSVSTLH 356
T + ++ NT + S H
Sbjct: 381 PTTENTITSTTTTTNTNATSHSH 403
>UNIPROTKB|I3LC53 [details] [associations]
symbol:LOC100622832 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 EMBL:FP015781
Ensembl:ENSSSCT00000029334 OMA:GKFGKIQ Uniprot:I3LC53
Length = 304
Score = 479 (173.7 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 93/224 (41%), Positives = 136/224 (60%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEI 232
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEM 228
>ZFIN|ZDB-GENE-090313-262 [details] [associations]
symbol:si:dkey-230e6.2 "si:dkey-230e6.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00184 SMART:SM00360
ZFIN:ZDB-GENE-090313-262 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 OMA:KCRICPT
EMBL:CABZ01070060 EMBL:CR387984 IPI:IPI00487935 RefSeq:XP_697509.2
Ensembl:ENSDART00000034714 GeneID:569055 KEGG:dre:569055
NextBio:20889484 Uniprot:E7F2Q8
Length = 772
Score = 477 (173.0 bits), Expect = 1.5e-44, Sum P(4) = 1.5e-44
Identities = 92/229 (40%), Positives = 137/229 (59%)
Query: 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63
E CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++
Sbjct: 9 EDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPED 63
Query: 64 KIVGMAAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLG 123
V E + I E+ L+SVRV+QRNLV++VGL L
Sbjct: 64 PAVYKPLSQEE-IQRIKNEKKQKLNEKKQKVTENRKH-LASVRVVQRNLVFVVGLSQRLA 121
Query: 124 DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 183
D ++L+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+
Sbjct: 122 DAEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNV 179
Query: 184 VLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEI 232
+++G++LKA GTTKYC +L+++ C PDC+YLHE+G + SFTK+E+
Sbjct: 180 IVDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEM 228
Score = 55 (24.4 bits), Expect = 1.5e-44, Sum P(4) = 1.5e-44
Identities = 38/171 (22%), Positives = 62/171 (36%)
Query: 391 EPPTPNGEPASVSLSNQASC--PTKYTDKSLNMPPNVIHSSDTTDHSCLSGPEKEENVTA 448
EP G + L S PT DK + P ++ + + + S P +T
Sbjct: 316 EPDLEQGTEQNTGLPPFPSALEPTSPIDKP-SEPISIGNGENISQTSSSDSPSPPPGLTK 374
Query: 449 DVKMQGLCSDVSAMSIDRNATNEHSGVARASSALPDHGMMKLPRN--QGLQPY-NADL-C 504
L +S + + E A + S D+ + P GL P+ N+
Sbjct: 375 P----SLVVPISVAELTARSPFE-GAAAESQSLFSDNSNFRHPNPIPSGLPPFSNSPQGA 429
Query: 505 REPLMSPETGKSITSKNDAFVSREPFDWRTDPTQAATDASPQEEEDVLSFD 555
+ M+PE TS+ S DW+ + A Q+++D L FD
Sbjct: 430 SDWPMTPEPQSLFTSETIPVSSST--DWQA-AFGFGSSAKQQQQDDDLGFD 477
Score = 47 (21.6 bits), Expect = 1.5e-44, Sum P(4) = 1.5e-44
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 648 MDFDTWD-DPLALPQNLAKLLSEPEKEPSSLKMSSSWKGHNHNQSRF 693
+ FD +D AL + K LS E P S SS G + Q RF
Sbjct: 474 LGFDPFDVTRKALADLIEKELSVQEHSPLSPNPSSHQTGLPNGQQRF 520
Score = 46 (21.3 bits), Expect = 1.9e-42, Sum P(3) = 1.9e-42
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 266 HINSVSTAKPSVKNAANNTASISKDPIPNGSS--ARSVALPAAASW 309
+IN + +++++T+S++ +P GS+ + S++ + ASW
Sbjct: 614 NINFGGLPNSTSSSSSSSTSSVNHIGVPIGSAGISHSLSWDSTASW 659
Score = 43 (20.2 bits), Expect = 2.6e-43, Sum P(4) = 2.6e-43
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 272 TAKPSVKNAANNTASISKD--------PIPNGSSARSVALPAAASWGMRASNQQSVATS 322
TA+ + AA + S+ D PIP+G S + A+ W M QS+ TS
Sbjct: 387 TARSPFEGAAAESQSLFSDNSNFRHPNPIPSGLPPFSNSPQGASDWPM-TPEPQSLFTS 444
Score = 40 (19.1 bits), Expect = 1.5e-44, Sum P(4) = 1.5e-44
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 779 PPGFSVPSR--APPPGF 793
PP P++ +PPPGF
Sbjct: 733 PPPTLTPNQFHSPPPGF 749
Score = 38 (18.4 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 768 LSVAARSQISAPPGFSVPSRAPPPGFT 794
+S+ IS PS PPPG T
Sbjct: 349 ISIGNGENISQTSSSDSPS--PPPGLT 373
>ZFIN|ZDB-GENE-040426-1164 [details] [associations]
symbol:zgc:63566 "zgc:63566" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 ZFIN:ZDB-GENE-040426-1164 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 HOVERGEN:HBG051043 HSSP:O95628
EMBL:BC054913 IPI:IPI00507902 RefSeq:NP_957463.1 UniGene:Dr.79144
ProteinModelPortal:Q7SYD1 SMR:Q7SYD1 STRING:Q7SYD1 GeneID:394144
KEGG:dre:394144 InParanoid:Q7SYD1 NextBio:20815095
ArrayExpress:Q7SYD1 Uniprot:Q7SYD1
Length = 798
Score = 501 (181.4 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 179/633 (28%), Positives = 281/633 (44%)
Query: 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63
E CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++
Sbjct: 9 EDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPED 63
Query: 64 KIVGMAAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLG 123
V E L I E+ LSSVRV+QRNLV++VGL L
Sbjct: 64 PAVYKPLSQEEL-QRIKNEKKQKQNERKQKITENRKH-LSSVRVVQRNLVFVVGLSQRLA 121
Query: 124 DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 183
D ++L+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+
Sbjct: 122 DPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNV 179
Query: 184 VLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTR- 238
V++G++LKA GTTKYC +L+++ C PDC+YLHE+G + SFTK+E+ + Y +
Sbjct: 180 VVDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQK 239
Query: 239 -VQQITGTTNN-LQRRSGNVLPPPFDDYCHINSVSTAK---PSVKNAANNTASISKD--- 290
+Q++ T N LQ +G +S S +K PS++ +S+
Sbjct: 240 LLQELYKTNPNFLQSSTGTGEKTKSKSGTSQSSNSNSKEAWPSLQTTGKMPNGLSEHHKT 299
Query: 291 -PIPNGSSARSVALPAAAS-WGMRASNQQSVATSACSN-GPSKQRPDTVGGALAFSSAVA 347
P+ GS + ++ S G+ + TS C P+ + D++ + +S ++
Sbjct: 300 PPLDGGSDSENMTPDGLDSDLGLGSITGLPSFTSNCEPVSPTSKPSDSISLSNGETSQIS 359
Query: 348 NTPSVS--------TLHV-DVVKRPTVHEXXXXXXXXXXXXXXXXXRQHFGSEPPTPNGE 398
S S +L V + V TV +F P P+G
Sbjct: 360 GNDSPSPPPGLSKPSLVVPNCVAGLTVRSPFEGAAAESQSLFSD--NSNFRHPNPIPSGL 417
Query: 399 PASV-SLSNQASCPTKYTDKSLNMPPNVIHSSDTTDHSCLSG---PEKEENVTADVKMQG 454
P SL N + PT +SL + I S +TD G K+++
Sbjct: 418 PGFPNSLHNNSDWPTAPEPQSL-FTSDTIPVSSSTDWQAAFGFGSSTKQQDDDLGFDPFD 476
Query: 455 LCSDVSAMSIDRNATNEHSGVARASSALPDHGMMKLPRNQGLQP-YNADLCREPLMSPET 513
+ A I+ T E S + + P +P L P +NA + PL P +
Sbjct: 477 VTRKALADLIENELTVEDSFPMTITKSAP-----VMPHGPLLGPLHNAPSMKSPLQPPTS 531
Query: 514 GKSITSKNDAFVSREPFDWRTDPTQAATDASPQEEEDVLSFDNQRLKDPEVVCRSN--YL 571
S + N + SR F T + + P + + S + + P R+N +L
Sbjct: 532 --SHFAPNSSLPSRG-FSHLPHRTVYNSFSFPGQAQ---SSRHSWMGMP---MRNNLPHL 582
Query: 572 PKSANSLHVTNHSSSLKSNGYPEKLARNTSGPG 604
S HSS L N P++ +++G G
Sbjct: 583 NHSTGPSSAAQHSSFLDLNLAPQQQHHHSTGLG 615
Score = 41 (19.5 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 769 SVAARSQISAPPGFSVPSRAPPPG 792
S+ A +++ P G +VP + P G
Sbjct: 718 SLQALTEMDVPSGSTVPPQPPHSG 741
Score = 38 (18.4 bits), Expect = 3.1e-44, Sum P(2) = 3.1e-44
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 788 APPPGFTSHERVDQSFDTLSGNHLLDSSSLLRN 820
+PPPGF + R T LL S+ + R+
Sbjct: 770 SPPPGFQTAFRASAQAST----DLLQSAGMERH 798
>UNIPROTKB|F1MAD6 [details] [associations]
symbol:Cnot4 "Protein Cnot4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
RGD:1310318 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 OMA:KCRICPT
IPI:IPI00565508 PRIDE:F1MAD6 Ensembl:ENSRNOT00000040969
ArrayExpress:F1MAD6 Uniprot:F1MAD6
Length = 713
Score = 486 (176.1 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 122/360 (33%), Positives = 190/360 (52%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTR--VQQI 242
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQEL 244
Query: 243 TGTTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN- 294
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 245 YKLNPNFLQLSTGSVDKNKNKVTPLQRYDVPIDKPSDSL-SIGNG-DNSQQISNSDTPSP 302
Query: 295 --GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPS 351
G S + +P ++S R+ + +V S + + P+ + L + TPS
Sbjct: 303 PPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTPS 362
Score = 50 (22.7 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 57/244 (23%), Positives = 83/244 (34%)
Query: 674 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 733
PSS + S W QS F+ S S + F G +QP+ F R
Sbjct: 355 PSSPQTPSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGF-GSSKQPEDDLGFDPFDVTRK 413
Query: 734 PLLDKLG--LRNGFHPXXXXXXXXXXXXHAVFS--PNK--LSVAARSQI-SAPPGFSV-P 785
L D + L P H + P L AA + S FSV P
Sbjct: 414 ALADLIEKELSVQDQPSLSSTSLQNSSSHTTSAKGPGSGFLHPAAPANANSLNSTFSVLP 473
Query: 786 SRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRNTYQMQSVGNVGSTGDIEFMDPAILA 845
R P F H V SF + RN+ M T + F+D +
Sbjct: 474 QRFPQ--FQQHRAVYNSFGFPGQAARYPWMAFPRNSI-MHLNHTANPTSNSNFLDLNL-- 528
Query: 846 VGKGRLQSGLNNPGLDMRNNFPSQLNAFENEARLQLMMERSLSPHQNLRYANIGDRLSPL 905
+ +GL + N+ LN E + L R+L P+ N+ + + + SP
Sbjct: 529 --PPQHNTGLGGIPIADNNSSVESLNMKEWQDGL-----RALLPNININFGGLPNSSSPS 581
Query: 906 NDSY 909
N ++
Sbjct: 582 NANH 585
Score = 45 (20.9 bits), Expect = 5.3e-44, Sum P(2) = 5.3e-44
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 779 PPGFSVPSRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRN 820
PP +PPPGF + R T LL SS+L R+
Sbjct: 676 PPSNPSSFHSPPPGFQTAFRPPSKTPT----DLLQSSTLDRH 713
Score = 38 (18.4 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 777 SAPPGFSVPSRAPPPGFTSHERVDQS 802
S PPGF R PP T + + S
Sbjct: 685 SPPPGFQTAFR--PPSKTPTDLLQSS 708
>UNIPROTKB|F8VQP3 [details] [associations]
symbol:CNOT4 "CCR4-NOT transcription complex subunit 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:AC083871 RefSeq:NP_001177779.1
UniGene:Hs.490224 GeneID:4850 KEGG:hsa:4850 CTD:4850 HGNC:HGNC:7880
GenomeRNAi:4850 NextBio:18678 EMBL:AC009331 IPI:IPI01011519
ProteinModelPortal:F8VQP3 SMR:F8VQP3 Ensembl:ENST00000541284
UCSC:uc011kpy.2 ArrayExpress:F8VQP3 Bgee:F8VQP3 Uniprot:F8VQP3
Length = 713
Score = 480 (174.0 bits), Expect = 3.5e-44, Sum P(2) = 3.5e-44
Identities = 119/349 (34%), Positives = 186/349 (53%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTR--VQQI 242
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQEL 244
Query: 243 TGTTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN- 294
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 245 YKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSL-SIGNG-DNSQQISNSDTPSP 302
Query: 295 --GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGAL 340
G S + +P ++S R+ + +V S + + P+ + L
Sbjct: 303 PPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGL 351
Score = 54 (24.1 bits), Expect = 3.5e-44, Sum P(2) = 3.5e-44
Identities = 59/246 (23%), Positives = 86/246 (34%)
Query: 674 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 733
PSS + SS W QS F+ S S + F G +QP+ F R
Sbjct: 355 PSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGF-GSSKQPEDDLGFDPFDVTRK 413
Query: 734 PLLDKLG--LRNGFHPXXXXXXXXXXXXHAVFSPNKLS-----VAARSQISAPPGFSV-P 785
L D + L P H + S AA + S FSV P
Sbjct: 414 ALADLIEKELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLP 473
Query: 786 SRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRNTYQMQSVGNVGSTGDIEFMDPAILA 845
R P F H V SF + RN+ M T + F+D +
Sbjct: 474 QRFPQ--FQQHRAVYNSFSFPGQAARYPWMAFPRNSI-MHLNHTANPTSNSNFLDLNL-- 528
Query: 846 VGKGRLQSGLNNPGLDMRNNFPS--QLNAFENEARLQLMMERSLSPHQNLRYANIGDRLS 903
+ +GL G+ + +N S LN E + L R+L P+ N+ + + + S
Sbjct: 529 --PPQHNTGLG--GIPVADNSSSVESLNMKEWQDGL-----RALLPNININFGGLPNSSS 579
Query: 904 PLNDSY 909
P N ++
Sbjct: 580 PSNANH 585
Score = 45 (20.9 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 779 PPGFSVPSRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRN 820
PP +PPPGF + R T LL SS+L R+
Sbjct: 676 PPSNPSSFHSPPPGFQTAFRPPSKTPT----DLLQSSTLDRH 713
Score = 41 (19.5 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 648 MDFDTWD-DPLALPQNLAKLLS---EPEKEPSSLKMSSS 682
+ FD +D AL + K LS +P P+SL+ SSS
Sbjct: 403 LGFDPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSS 441
Score = 38 (18.4 bits), Expect = 5.9e-43, Sum P(3) = 5.9e-43
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 777 SAPPGFSVPSRAPPPGFTSHERVDQS 802
S PPGF R PP T + + S
Sbjct: 685 SPPPGFQTAFR--PPSKTPTDLLQSS 708
>RGD|1310318 [details] [associations]
symbol:Cnot4 "CCR4-NOT transcription complex, subunit 4"
species:10116 "Rattus norvegicus" [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISO] [GO:0051865 "protein
autoubiquitination" evidence=ISO] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
RGD:1310318 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043
HOGENOM:HOG000065696 UniGene:Rn.203387 IPI:IPI00565508
EMBL:BC100152 RefSeq:NP_001032871.1 ProteinModelPortal:Q498M7
SMR:Q498M7 STRING:Q498M7 GeneID:312227 KEGG:rno:312227
UCSC:RGD:1310318 InParanoid:Q498M7 OrthoDB:EOG43BMNB NextBio:664680
Genevestigator:Q498M7 Uniprot:Q498M7
Length = 710
Score = 482 (174.7 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 121/358 (33%), Positives = 189/358 (52%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTR--VQQI 242
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQEL 244
Query: 243 TGTTNN-LQRRSGNVLPPPFDDYCHINSVSTAKPS----VKNAANNTASISKDPIPN--- 294
N LQ +G+V + + S KPS + N +N+ IS P+
Sbjct: 245 YKLNPNFLQLSTGSV-DKNKNKVTPLQS-PIDKPSDSLSIGNG-DNSQQISNSDTPSPPP 301
Query: 295 GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPS 351
G S + +P ++S R+ + +V S + + P+ + L + TPS
Sbjct: 302 GLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTPS 359
Score = 50 (22.7 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 57/244 (23%), Positives = 83/244 (34%)
Query: 674 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 733
PSS + S W QS F+ S S + F G +QP+ F R
Sbjct: 352 PSSPQTPSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGF-GSSKQPEDDLGFDPFDVTRK 410
Query: 734 PLLDKLG--LRNGFHPXXXXXXXXXXXXHAVFS--PNK--LSVAARSQI-SAPPGFSV-P 785
L D + L P H + P L AA + S FSV P
Sbjct: 411 ALADLIEKELSVQDQPSLSSTSLQNSSSHTTSAKGPGSGFLHPAAPANANSLNSTFSVLP 470
Query: 786 SRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRNTYQMQSVGNVGSTGDIEFMDPAILA 845
R P F H V SF + RN+ M T + F+D +
Sbjct: 471 QRFPQ--FQQHRAVYNSFGFPGQAARYPWMAFPRNSI-MHLNHTANPTSNSNFLDLNL-- 525
Query: 846 VGKGRLQSGLNNPGLDMRNNFPSQLNAFENEARLQLMMERSLSPHQNLRYANIGDRLSPL 905
+ +GL + N+ LN E + L R+L P+ N+ + + + SP
Sbjct: 526 --PPQHNTGLGGIPIADNNSSVESLNMKEWQDGL-----RALLPNININFGGLPNSSSPS 578
Query: 906 NDSY 909
N ++
Sbjct: 579 NANH 582
Score = 45 (20.9 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 779 PPGFSVPSRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRN 820
PP +PPPGF + R T LL SS+L R+
Sbjct: 673 PPSNPSSFHSPPPGFQTAFRPPSKTPT----DLLQSSTLDRH 710
Score = 38 (18.4 bits), Expect = 8.4e-43, Sum P(2) = 8.4e-43
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 777 SAPPGFSVPSRAPPPGFTSHERVDQS 802
S PPGF R PP T + + S
Sbjct: 682 SPPPGFQTAFR--PPSKTPTDLLQSS 705
>UNIPROTKB|E2QXU8 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 GeneTree:ENSGT00390000000068
EMBL:AAEX03010245 GeneID:482708 KEGG:cfa:482708 RefSeq:XP_859650.1
Ensembl:ENSCAFT00000005176 OMA:KCRICPT NextBio:20857244
Uniprot:E2QXU8
Length = 710
Score = 479 (173.7 bits), Expect = 6.9e-44, Sum P(2) = 6.9e-44
Identities = 93/224 (41%), Positives = 136/224 (60%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEI 232
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEM 228
Score = 52 (23.4 bits), Expect = 6.9e-44, Sum P(2) = 6.9e-44
Identities = 60/246 (24%), Positives = 87/246 (35%)
Query: 674 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 733
PSS + SS W QS F+ S S + F G +QP+ F R
Sbjct: 352 PSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGF-GSSKQPEDDLGFDPFDVTRK 410
Query: 734 PLLDKLG--LRNGFHPXXXXXXXXXXXXHAVFS--PNK--LSVAARSQI-SAPPGFSV-P 785
L D + L P H + P L AA + S FSV P
Sbjct: 411 ALADLIEKELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAPTNANSLNSTFSVLP 470
Query: 786 SRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRNTYQMQSVGNVGSTGDIEFMDPAILA 845
R P F H V SF + RN+ M T + F+D +
Sbjct: 471 QRFPQ--FQQHRAVYNSFSFPGQAARYPWMAFPRNSI-MHLNHTANPTSNSNFLDLNL-- 525
Query: 846 VGKGRLQSGLNNPGLDMRNNFPS--QLNAFENEARLQLMMERSLSPHQNLRYANIGDRLS 903
+ +GL G+ + +N S LN E + L R+L P+ N+ + + + S
Sbjct: 526 --PPQHNTGLG--GIPIADNSSSVESLNMKEWQDGL-----RALLPNININFGGLPNSSS 576
Query: 904 PLNDSY 909
P N ++
Sbjct: 577 PSNANH 582
Score = 45 (20.9 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 779 PPGFSVPSRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRN 820
PP +PPPGF + R T LL SS+L R+
Sbjct: 673 PPSNPSSFHSPPPGFQTAFRPPSKTPT----DLLQSSTLDRH 710
Score = 41 (19.5 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 648 MDFDTWD-DPLALPQNLAKLLS---EPEKEPSSLKMSSS 682
+ FD +D AL + K LS +P P+SL+ SSS
Sbjct: 400 LGFDPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSS 438
Score = 38 (18.4 bits), Expect = 6.9e-43, Sum P(3) = 6.9e-43
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 777 SAPPGFSVPSRAPPPGFTSHERVDQS 802
S PPGF R PP T + + S
Sbjct: 682 SPPPGFQTAFR--PPSKTPTDLLQSS 705
Score = 37 (18.1 bits), Expect = 3.4e-43, Sum P(3) = 3.4e-43
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 273 AKPSVKNAANNTASISKDPIPNGSSARSV 301
A P+ N+ N+T S+ P R+V
Sbjct: 454 AAPTNANSLNSTFSVLPQRFPQFQQHRAV 482
>UNIPROTKB|E1C4B3 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 OMA:KCRICPT EMBL:AADN02005991
EMBL:AADN02005992 IPI:IPI00822866 Ensembl:ENSGALT00000038170
ArrayExpress:E1C4B3 Uniprot:E1C4B3
Length = 765
Score = 480 (174.0 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 94/233 (40%), Positives = 139/233 (59%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRVQQ 241
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + + Q
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAIFAGKHQ 237
Score = 48 (22.0 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 778 APPGFSVPSRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRN 820
+PP +PPPGF + R T LL SS+L R+
Sbjct: 727 SPPSNPTSFHSPPPGFQTAFRPPSKTPT----DLLQSSALDRH 765
Score = 45 (20.9 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
Identities = 58/248 (23%), Positives = 87/248 (35%)
Query: 674 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 733
PSS + S+ W QS F+ S S + F QQ F+ F R
Sbjct: 407 PSSPQTSNDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDP-FDVTRK 465
Query: 734 PLLDKLG--LRNGFHPXXXXXXXXXXXXHAVFS--PNK--LSVAARSQI-SAPPGFSV-P 785
L D + L P H + P L AA + S F V P
Sbjct: 466 ALADLIEKELSVQDQPSLSPTSLQNPSPHTTTAKGPGSGFLHPAAPTNANSLSSTFPVMP 525
Query: 786 SRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRNTYQMQSVGNVGSTGDIEFMDPAILA 845
R P F H V SF + RN+ M T + F+D +
Sbjct: 526 QRFPQ--FQQHRAVYNSFSFPGQAARYPWMAFPRNSI-MHLNHTANPTSNSNFLDLNL-- 580
Query: 846 VGKGRLQSGLNNPGLDMRNNFPS--QLNAFENEARLQLMMERSLSPHQNLRYANIGDRLS 903
+ + +GL G+ + +N S LN E + L R+L P+ N+ + + + S
Sbjct: 581 --QPQHSTGLG--GIPISDNSSSVESLNMKEWQDGL-----RALLPNINISFGGLPNASS 631
Query: 904 PLNDSYGI 911
P N ++ +
Sbjct: 632 PSNANHSV 639
Score = 44 (20.5 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 26/97 (26%), Positives = 39/97 (40%)
Query: 463 SIDRNATNEHSG-VARASSALPDHGMMKLPRNQGLQPY--NADLCREPLMSPETGKSITS 519
S + +A + G V + S D+ P GL P+ + + +PE TS
Sbjct: 369 SSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSNDWPTAPEPQSLFTS 428
Query: 520 KNDAFVSREPFDWRTDPTQAATD-ASPQEEEDVLSFD 555
+ S DW QAA S +++ED L FD
Sbjct: 429 ETIPVSSST--DW-----QAAFGFGSSKQQEDDLGFD 458
Score = 38 (18.4 bits), Expect = 1.7e-42, Sum P(3) = 1.7e-42
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 777 SAPPGFSVPSRAPPPGFTSHERVDQS 802
S PPGF R PP T + + S
Sbjct: 737 SPPPGFQTAFR--PPSKTPTDLLQSS 760
Score = 37 (18.1 bits), Expect = 7.2e-42, Sum P(2) = 7.2e-42
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 777 SAPPGFSVPSRAPPPGFTSH 796
S PPG + P+ P ++H
Sbjct: 353 SPPPGLTKPNPVIPISSSNH 372
>UNIPROTKB|Q5ZJC9 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043
GeneTree:ENSGT00390000000068 HOGENOM:HOG000065696 EMBL:AADN02005991
EMBL:AADN02005992 EMBL:AJ720505 IPI:IPI00580995
RefSeq:NP_001012829.1 UniGene:Gga.6842 SMR:Q5ZJC9 STRING:Q5ZJC9
Ensembl:ENSGALT00000019099 GeneID:417936 KEGG:gga:417936
NextBio:20821166 Uniprot:Q5ZJC9
Length = 762
Score = 479 (173.7 bits), Expect = 1.9e-43, Sum P(3) = 1.9e-43
Identities = 93/224 (41%), Positives = 136/224 (60%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLGDEDLL 128
E L I E+ L+SVRV+Q+NLV++VGL L D ++L
Sbjct: 69 PLSQEEL-QRIKNEKKQKQNERKQKISENRKH-LASVRVVQKNLVFVVGLSQRLADPEVL 126
Query: 129 QRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188
+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G+
Sbjct: 127 KRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGR 184
Query: 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEI 232
+LKA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEM 228
Score = 48 (22.0 bits), Expect = 1.9e-43, Sum P(3) = 1.9e-43
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 778 APPGFSVPSRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRN 820
+PP +PPPGF + R T LL SS+L R+
Sbjct: 724 SPPSNPTSFHSPPPGFQTAFRPPSKTPT----DLLQSSALDRH 762
Score = 45 (20.9 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 58/248 (23%), Positives = 87/248 (35%)
Query: 674 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 733
PSS + S+ W QS F+ S S + F QQ F+ F R
Sbjct: 404 PSSPQTSNDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDP-FDVTRK 462
Query: 734 PLLDKLG--LRNGFHPXXXXXXXXXXXXHAVFS--PNK--LSVAARSQI-SAPPGFSV-P 785
L D + L P H + P L AA + S F V P
Sbjct: 463 ALADLIEKELSVQDQPSLSPTSLQNPSPHTTTAKGPGSGFLHPAAPTNANSLSSTFPVMP 522
Query: 786 SRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRNTYQMQSVGNVGSTGDIEFMDPAILA 845
R P F H V SF + RN+ M T + F+D +
Sbjct: 523 QRFPQ--FQQHRAVYNSFSFPGQAARYPWMAFPRNSI-MHLNHTANPTSNSNFLDLNL-- 577
Query: 846 VGKGRLQSGLNNPGLDMRNNFPS--QLNAFENEARLQLMMERSLSPHQNLRYANIGDRLS 903
+ + +GL G+ + +N S LN E + L R+L P+ N+ + + + S
Sbjct: 578 --QPQHSTGLG--GIPISDNSSSVESLNMKEWQDGL-----RALLPNINISFGGLPNASS 628
Query: 904 PLNDSYGI 911
P N ++ +
Sbjct: 629 PSNANHSV 636
Score = 44 (20.5 bits), Expect = 1.9e-43, Sum P(3) = 1.9e-43
Identities = 26/97 (26%), Positives = 39/97 (40%)
Query: 463 SIDRNATNEHSG-VARASSALPDHGMMKLPRNQGLQPY--NADLCREPLMSPETGKSITS 519
S + +A + G V + S D+ P GL P+ + + +PE TS
Sbjct: 366 SSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSNDWPTAPEPQSLFTS 425
Query: 520 KNDAFVSREPFDWRTDPTQAATD-ASPQEEEDVLSFD 555
+ S DW QAA S +++ED L FD
Sbjct: 426 ETIPVSSST--DW-----QAAFGFGSSKQQEDDLGFD 455
Score = 38 (18.4 bits), Expect = 2.1e-42, Sum P(3) = 2.1e-42
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 777 SAPPGFSVPSRAPPPGFTSHERVDQS 802
S PPGF R PP T + + S
Sbjct: 734 SPPPGFQTAFR--PPSKTPTDLLQSS 757
Score = 37 (18.1 bits), Expect = 9.0e-42, Sum P(2) = 9.0e-42
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 777 SAPPGFSVPSRAPPPGFTSH 796
S PPG + P+ P ++H
Sbjct: 350 SPPPGLTKPNPVIPISSSNH 369
>CGD|CAL0000791 [details] [associations]
symbol:NOT4 species:5476 "Candida albicans" [GO:0009405
"pathogenesis" evidence=IMP] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0000152 "nuclear ubiquitin ligase complex"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0036178 "filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 CGD:CAL0000791 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0044011 EMBL:AACQ01000131 GO:GO:0000152
GO:GO:0030015 eggNOG:COG5175 RefSeq:XP_713212.1
ProteinModelPortal:Q59UI5 STRING:Q59UI5 GeneID:3645115
KEGG:cal:CaO19.2379 Uniprot:Q59UI5
Length = 553
Score = 417 (151.9 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 104/320 (32%), Positives = 160/320 (50%)
Query: 16 MDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCERL 75
MD++D+ KPC CGY+IC +C+++I + E GRCP CR YD E + E
Sbjct: 1 MDISDKNFKPCPCGYQICQFCYNNIR---QNPELNGRCPGCRRLYDDESVEYKTVSAEEY 57
Query: 76 -VAEISMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGL--PLNLGD-EDL 127
+ ++ E+ L+ +RV+Q+NLVY+ GL P N D +
Sbjct: 58 KLMQLKKEKRDREKKQKEKEKKEMEMVNKKHLAGLRVVQKNLVYVTGLNPPCNPDDLHSV 117
Query: 128 LQRREYFGQYGKVLKVSMSR---TAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184
L+ +YFGQYGK+ K+ + + T N VY+T++++E+A+RCI + G +
Sbjct: 118 LRSDKYFGQYGKISKIVIYKKTPTTQTSTHHHQNPGLVVYVTFTRKEDALRCITELDGSL 177
Query: 185 LEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRVQQITG 244
+G+ L+A GTTKYC ++LR PC NP+C++LHE G + DS+T+ ++ + +T
Sbjct: 178 CDGRVLRAAHGTTKYCSSYLRGQPCPNPNCMFLHEPGEEADSYTRKDLSTQQGIKMGMTA 237
Query: 245 ---TTNNLQRRSGNVLPPPF-DDYCHINSVSTAKPSVKN-AANNTASISKDPIPNGSS-- 297
TT+ + S N D H + PS + AA T S S P N +
Sbjct: 238 RSHTTSFGEESSNNSQSNQAGSDDDHHEAHKEHLPSTAHWAAAGTTSGSNSPSVNNNIPL 297
Query: 298 ARSVALPAAASWGMRASNQQ 317
A S A P +R QQ
Sbjct: 298 ANSAAFPTLGEI-VRDQKQQ 316
Score = 41 (19.5 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 786 SRAPPPGFTSHERVDQSFD-TLSGNHLLDSSSLL 818
S PPPG + + V S D + +G L SSS L
Sbjct: 511 STPPPPGLFAGKDVAASSDMSNTGAPLPSSSSQL 544
>UNIPROTKB|Q59UI5 [details] [associations]
symbol:NOT4 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Mot2p" species:237561 "Candida albicans SC5314"
[GO:0000152 "nuclear ubiquitin ligase complex" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=ISS] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044011 "single-species
biofilm formation on inanimate substrate" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
CGD:CAL0000791 GO:GO:0071216 GO:GO:0036244 GO:GO:0036180
GO:GO:0036178 GO:GO:0009405 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0044011
EMBL:AACQ01000131 GO:GO:0000152 GO:GO:0030015 eggNOG:COG5175
RefSeq:XP_713212.1 ProteinModelPortal:Q59UI5 STRING:Q59UI5
GeneID:3645115 KEGG:cal:CaO19.2379 Uniprot:Q59UI5
Length = 553
Score = 417 (151.9 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 104/320 (32%), Positives = 160/320 (50%)
Query: 16 MDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCERL 75
MD++D+ KPC CGY+IC +C+++I + E GRCP CR YD E + E
Sbjct: 1 MDISDKNFKPCPCGYQICQFCYNNIR---QNPELNGRCPGCRRLYDDESVEYKTVSAEEY 57
Query: 76 -VAEISMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGL--PLNLGD-EDL 127
+ ++ E+ L+ +RV+Q+NLVY+ GL P N D +
Sbjct: 58 KLMQLKKEKRDREKKQKEKEKKEMEMVNKKHLAGLRVVQKNLVYVTGLNPPCNPDDLHSV 117
Query: 128 LQRREYFGQYGKVLKVSMSR---TAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184
L+ +YFGQYGK+ K+ + + T N VY+T++++E+A+RCI + G +
Sbjct: 118 LRSDKYFGQYGKISKIVIYKKTPTTQTSTHHHQNPGLVVYVTFTRKEDALRCITELDGSL 177
Query: 185 LEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRVQQITG 244
+G+ L+A GTTKYC ++LR PC NP+C++LHE G + DS+T+ ++ + +T
Sbjct: 178 CDGRVLRAAHGTTKYCSSYLRGQPCPNPNCMFLHEPGEEADSYTRKDLSTQQGIKMGMTA 237
Query: 245 ---TTNNLQRRSGNVLPPPF-DDYCHINSVSTAKPSVKN-AANNTASISKDPIPNGSS-- 297
TT+ + S N D H + PS + AA T S S P N +
Sbjct: 238 RSHTTSFGEESSNNSQSNQAGSDDDHHEAHKEHLPSTAHWAAAGTTSGSNSPSVNNNIPL 297
Query: 298 ARSVALPAAASWGMRASNQQ 317
A S A P +R QQ
Sbjct: 298 ANSAAFPTLGEI-VRDQKQQ 316
Score = 41 (19.5 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 786 SRAPPPGFTSHERVDQSFD-TLSGNHLLDSSSLL 818
S PPPG + + V S D + +G L SSS L
Sbjct: 511 STPPPPGLFAGKDVAASSDMSNTGAPLPSSSSQL 544
>FB|FBgn0051716 [details] [associations]
symbol:Cnot4 "Cnot 4 homologue" species:7227 "Drosophila
melanogaster" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0051297 "centrosome organization"
evidence=IMP] [GO:0046425 "regulation of JAK-STAT cascade"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
EMBL:AE014134 GO:GO:0051297 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00390000000068
GO:GO:0046425 HSSP:O95628 UniGene:Dm.18584 GeneID:34416
KEGG:dme:Dmel_CG31716 FlyBase:FBgn0051716 GenomeRNAi:34416
NextBio:788389 EMBL:BT003543 RefSeq:NP_723578.1 RefSeq:NP_723579.1
RefSeq:NP_723580.1 RefSeq:NP_723581.1 RefSeq:NP_723582.1 SMR:Q9VKX1
MINT:MINT-965323 STRING:Q9VKX1 EnsemblMetazoa:FBtr0080009
EnsemblMetazoa:FBtr0080010 EnsemblMetazoa:FBtr0080011
EnsemblMetazoa:FBtr0080012 EnsemblMetazoa:FBtr0080013
UCSC:CG31716-RA InParanoid:Q9VKX1 Uniprot:Q9VKX1
Length = 1051
Score = 464 (168.4 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
Identities = 116/335 (34%), Positives = 175/335 (52%)
Query: 2 SDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61
S++ CPLC E +++ D PC CGY+IC +CWH I + + CPACR Y
Sbjct: 6 SNDDAVECPLCMEPLEVDDLTFFPCTCGYQICRFCWHRI-----RTDENKLCPACRKEYP 60
Query: 62 KEKIVGMAAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLN 121
+ E ++A S +R L++VRV+Q+NLV++VGLP
Sbjct: 61 ENPADFKPLSQEEMIAFKSQKRQRDQQRKQKITENRKH--LANVRVVQKNLVFVVGLPPR 118
Query: 122 LGDEDLLQRREYFGQYGKVLKVSM--SRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 179
L D D+L++ EYFG+YGK+ KV + S T AGV Q P+ S Y+TY +A+R IQS
Sbjct: 119 LADADILKKHEYFGKYGKIHKVVINPSTTYAGV--QGPS--ASAYVTYVNNSDALRAIQS 174
Query: 180 VHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRV 239
V+ +++G+ +K GTTKYC +++N C DC+YLHE+G E SFTK+E+
Sbjct: 175 VNNIMIDGRLIKTSLGTTKYCSHFMKNQQCPKGDCMYLHELGDPEASFTKEEM------- 227
Query: 240 QQITGTTNNLQRRSGNVLPPPFDDYCHINSVSTAKPSVKNAANNTASISKDPIPNGSSAR 299
Q G ++R + L V+ A PS +A+++++ NGSSA
Sbjct: 228 HQ--GKHLEYEKRLHDTLIASLGPNA-TGIVNVAIPSSSSASSSSSGSGT----NGSSAS 280
Query: 300 SVALPAAASWGMRAS---NQQSVATSACSNGPSKQ 331
A A + S +++ AT+ S+G SK+
Sbjct: 281 GNAQQKEAWPSLSVSPINGKEAAATATSSSGKSKR 315
Score = 47 (21.6 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 860 LDMRNNFPSQLNAFENE--ARLQLMMERSLSPHQNLRYANIGDRLSPLNDSYGISSRLMD 917
L RNNF +Q+N N+ +L + + Q L + G+ L N S
Sbjct: 667 LQKRNNFATQINGPANDFLRAYELRAQANAIIQQQLLQQHAGENLFGGNMSKFFDFH-KS 725
Query: 918 QPQANN 923
QPQ+++
Sbjct: 726 QPQSHH 731
Score = 46 (21.3 bits), Expect = 3.7e-39, Sum P(3) = 3.7e-39
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 880 QLMMERSLSPHQNLRY 895
QL+ ++ L HQNLR+
Sbjct: 637 QLLQQQHLQQHQNLRH 652
Score = 40 (19.1 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 786 SRAPPPGFTSHERVDQSFDTLSGNHLLDSSSLLRNTYQM--QSVGNVGSTG 834
+R PPPGF + L G L +S + M VGN G+ G
Sbjct: 871 ARMPPPGFNHVNTLG-----LGGASRLQLTSKIIPFMNMPVNGVGNSGAQG 916
Score = 37 (18.1 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 933 QQSR---NPLISNGGHWDGWNEVQGGNSLGMAELLRNE 967
QQ+R N ++ + +D + E Q G +AEL+ NE
Sbjct: 803 QQNRFTQNSIVDDDLGFDPFVETQKG----LAELMENE 836
>WB|WBGene00003827 [details] [associations]
symbol:ntl-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040017 "positive regulation of locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 SMART:SM00361
GO:GO:0009792 GO:GO:0040010 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0040017 GO:GO:0000003 GO:GO:0003676
KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 EMBL:FO080908 HSSP:O95628
GeneID:177580 KEGG:cel:CELE_C49H3.5 UCSC:C49H3.5a CTD:177580
HOGENOM:HOG000021187 NextBio:897454 RefSeq:NP_741453.1
ProteinModelPortal:Q9GYQ9 SMR:Q9GYQ9 DIP:DIP-27225N IntAct:Q9GYQ9
MINT:MINT-1111747 STRING:Q9GYQ9 PRIDE:Q9GYQ9
EnsemblMetazoa:C49H3.5a.1 EnsemblMetazoa:C49H3.5a.2
WormBase:C49H3.5a InParanoid:Q9GYQ9 OMA:NSMLDGR ArrayExpress:Q9GYQ9
Uniprot:Q9GYQ9
Length = 796
Score = 438 (159.2 bits), Expect = 6.9e-38, Sum P(3) = 6.9e-38
Identities = 89/244 (36%), Positives = 137/244 (56%)
Query: 2 SDEG-EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60
SDE +K CPLC E ++L D PCKC Y+IC +CWH I + + G CPACR PY
Sbjct: 5 SDESCDKECPLCMETLELDDINFYPCKCEYQICRFCWHRI-----RTDENGLCPACRQPY 59
Query: 61 DKEKIVGMAAKCERLVAEISMERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPL 120
++ + + + +R L + RV+Q+NLVY+VGL
Sbjct: 60 PEDPVNFKPMTTDDVRKHKDEQRLKKQAEKLKLSDARQY--LCNYRVLQKNLVYVVGLSP 117
Query: 121 NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180
+ D ++L++ EYFG+YGK+ K+ S T + P + + Y+TY + ++A+R IQ V
Sbjct: 118 RVADPEILKKNEYFGRYGKIQKIVTSATPSLPAPHLPPSH-TAYVTYKRVDDALRAIQGV 176
Query: 181 HGFVLEGKSLKACFGTTKYCHAWLRNVPCTNP--DCLYLHEVGSQEDSFTKDEI-ISAYT 237
H +L+G+ +KA GTTKYC ++L + C P +C+YLHE E SFTKD++ + +T
Sbjct: 177 HNSMLDGRLVKASLGTTKYCSSFLNSRKCFKPVGECMYLHENAEAEISFTKDDMHLGKHT 236
Query: 238 RVQQ 241
++
Sbjct: 237 EYEK 240
Score = 51 (23.0 bits), Expect = 6.9e-38, Sum P(3) = 6.9e-38
Identities = 24/108 (22%), Positives = 40/108 (37%)
Query: 385 RQHFGSEPPTPNGEPASVSLSNQASCPTKYTDKSLNMPPNVIHSSDTTD---H-SCLSGP 440
R FG PP G P++ S P T +S S H S +
Sbjct: 682 RVPFGMAPPPGLGGPSTNRSSTTQQAPPHMTQQSQQQQQQQQSSMGLFGMGGHQSMMQDH 741
Query: 441 EKEENVTADVKMQGLCSDVSAMSIDRNATNE--HSGVARASSALPDHG 486
+ ++ +A + L +V+ +D N+ + H R+S+ P G
Sbjct: 742 QSQQPQSAQDAFKALLPNVNVRFMDDNSMSRWSHENSLRSSAVPPPPG 789
Score = 38 (18.4 bits), Expect = 6.9e-38, Sum P(3) = 6.9e-38
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 789 PPPGFTS 795
PPPGF+S
Sbjct: 786 PPPGFSS 792
Score = 38 (18.4 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 783 SVPSRAPPPGFTSHERVDQ 801
S+ SR PPP T ++D+
Sbjct: 245 SMNSRPPPPQSTLASQLDK 263
Score = 37 (18.1 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 576 NSLHVTNHSSSLKSNGYP 593
NS+ +H +SL+S+ P
Sbjct: 768 NSMSRWSHENSLRSSAVP 785
>TAIR|locus:2027262 [details] [associations]
symbol:AT1G74870 species:3702 "Arabidopsis thaliana"
[GO:0005794 "Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0042991 "transcription factor import
into nucleus" evidence=RCA] InterPro:IPR001841 PROSITE:PS50089
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC008263 EMBL:AC013258
eggNOG:COG5175 HSSP:O95628 EMBL:BT010439 EMBL:AK175181
IPI:IPI00532990 PIR:C96778 RefSeq:NP_177625.1 UniGene:At.34831
ProteinModelPortal:Q9S7I7 SMR:Q9S7I7 PRIDE:Q9S7I7
EnsemblPlants:AT1G74870.1 GeneID:843826 KEGG:ath:AT1G74870
TAIR:At1g74870 HOGENOM:HOG000153442 OMA:SENEARC PhylomeDB:Q9S7I7
ProtClustDB:CLSN2914586 ArrayExpress:Q9S7I7 Genevestigator:Q9S7I7
Uniprot:Q9S7I7
Length = 289
Score = 161 (61.7 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62
+G++ CP+C+E MD TD + +PC CG+ IC++C + I E E RCPACR Y K
Sbjct: 207 DGDEECPICSELMDATDLEFEPCTCGFRICLFCHNKI------SENEARCPACRKDYKK 259
>TAIR|locus:2097930 [details] [associations]
symbol:AT3G48070 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 EMBL:CP002686
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 IPI:IPI00657445
RefSeq:NP_001030828.1 UniGene:At.23454 ProteinModelPortal:F4JCT1
SMR:F4JCT1 PRIDE:F4JCT1 EnsemblPlants:AT3G48070.2 GeneID:823962
KEGG:ath:AT3G48070 OMA:APDDIFR PhylomeDB:F4JCT1 Uniprot:F4JCT1
Length = 350
Score = 156 (60.0 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65
+CP+C E++DLTD PC CG+ +C++C I D +GRCP CR PY++ I
Sbjct: 243 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTICD------GDGRCPGCRKPYERNTI 294
>TAIR|locus:2170708 [details] [associations]
symbol:AT5G62910 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 EMBL:CP002688
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AB009053
HSSP:O95628 EMBL:BT024718 IPI:IPI00543424 RefSeq:NP_201096.1
UniGene:At.29027 ProteinModelPortal:Q9FM05 SMR:Q9FM05 PRIDE:Q9FM05
EnsemblPlants:AT5G62910.1 GeneID:836411 KEGG:ath:AT5G62910
TAIR:At5g62910 HOGENOM:HOG000083855 InParanoid:Q9FM05 OMA:HHESFME
PhylomeDB:Q9FM05 ProtClustDB:CLSN2684023 Genevestigator:Q9FM05
Uniprot:Q9FM05
Length = 327
Score = 155 (59.6 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65
+CP+C E++DLTD PC CG+ +C++C I D +GRCP CR PY++ +
Sbjct: 251 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTICD------GDGRCPGCRKPYERNMV 302
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 999 952 0.00094 122 3 11 23 0.45 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 626 (67 KB)
Total size of DFA: 467 KB (2219 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 95.97u 0.10s 96.07t Elapsed: 00:00:06
Total cpu time: 95.98u 0.10s 96.08t Elapsed: 00:00:06
Start: Thu May 9 16:27:53 2013 End: Thu May 9 16:27:59 2013