Query 001895
Match_columns 999
No_of_seqs 738 out of 4669
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 11:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 2E-78 4.3E-83 609.2 17.6 284 648-955 3-286 (303)
2 KOG0374 Serine/threonine speci 100.0 1.9E-72 4.1E-77 619.5 27.0 295 648-955 9-304 (331)
3 KOG0373 Serine/threonine speci 100.0 1.2E-71 2.6E-76 550.4 17.3 286 648-957 6-292 (306)
4 PTZ00480 serine/threonine-prot 100.0 1.5E-68 3.4E-73 586.9 29.6 294 648-957 11-304 (320)
5 cd07420 MPP_RdgC Drosophila me 100.0 4.5E-68 9.8E-73 584.3 31.1 286 646-951 5-320 (321)
6 cd07419 MPP_Bsu1_C Arabidopsis 100.0 2E-67 4.4E-72 583.7 30.3 303 651-953 1-311 (311)
7 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 7.7E-67 1.7E-71 570.2 29.9 283 648-954 2-284 (285)
8 PTZ00244 serine/threonine-prot 100.0 4.7E-67 1E-71 572.8 28.3 291 646-952 2-292 (294)
9 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 6.8E-67 1.5E-71 572.8 27.9 290 648-953 2-291 (293)
10 PTZ00239 serine/threonine prot 100.0 1.8E-66 3.9E-71 569.8 30.6 286 648-957 3-289 (303)
11 cd07417 MPP_PP5_C PP5, C-termi 100.0 1.9E-65 4.1E-70 565.6 28.9 291 644-958 12-308 (316)
12 cd07416 MPP_PP2B PP2B, metallo 100.0 1.1E-64 2.5E-69 558.9 31.0 288 648-958 3-301 (305)
13 smart00156 PP2Ac Protein phosp 100.0 2.1E-64 4.7E-69 549.6 28.2 269 671-953 1-269 (271)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 1.9E-62 4.1E-67 546.3 31.2 299 644-952 8-364 (377)
15 KOG0375 Serine-threonine phosp 100.0 1.3E-62 2.8E-67 515.9 12.8 274 670-956 60-344 (517)
16 KOG0371 Serine/threonine prote 100.0 2.7E-62 5.8E-67 495.7 12.9 286 648-957 20-305 (319)
17 KOG0377 Protein serine/threoni 100.0 5.1E-53 1.1E-57 453.3 13.5 277 648-945 121-423 (631)
18 KOG0376 Serine-threonine phosp 100.0 2.1E-46 4.5E-51 415.7 13.7 274 671-958 183-462 (476)
19 PLN02153 epithiospecifier prot 100.0 1.4E-36 3.1E-41 345.6 38.5 307 78-439 9-339 (341)
20 PLN02193 nitrile-specifier pro 100.0 2.3E-36 4.9E-41 357.1 39.7 303 81-439 155-468 (470)
21 KOG4693 Uncharacterized conser 100.0 1.1E-36 2.4E-41 310.8 24.1 301 89-444 11-350 (392)
22 KOG4441 Proteins containing BT 100.0 1.4E-33 2.9E-38 337.6 31.3 263 113-439 284-546 (571)
23 PLN02193 nitrile-specifier pro 100.0 2.1E-32 4.6E-37 323.3 36.9 275 113-440 120-411 (470)
24 KOG4152 Host cell transcriptio 100.0 1.6E-33 3.5E-38 307.8 22.0 313 76-442 17-366 (830)
25 TIGR03547 muta_rot_YjhT mutatr 100.0 3.9E-31 8.4E-36 301.7 33.7 276 87-437 3-344 (346)
26 PHA02713 hypothetical protein; 100.0 4.5E-31 9.8E-36 317.2 30.9 234 150-426 272-523 (557)
27 KOG4693 Uncharacterized conser 100.0 1E-31 2.2E-36 274.5 20.2 228 87-353 74-312 (392)
28 TIGR03548 mutarot_permut cycli 100.0 1.5E-30 3.2E-35 294.1 31.8 284 90-433 2-322 (323)
29 KOG0379 Kelch repeat-containin 100.0 1.8E-30 3.9E-35 306.3 30.5 297 83-439 52-357 (482)
30 PRK14131 N-acetylneuraminic ac 100.0 4.9E-30 1.1E-34 295.5 32.9 283 83-439 20-368 (376)
31 PLN02153 epithiospecifier prot 100.0 6.2E-30 1.4E-34 291.1 33.0 256 158-440 5-285 (341)
32 KOG4441 Proteins containing BT 100.0 2.7E-30 5.9E-35 309.2 28.6 242 82-381 313-556 (571)
33 KOG1230 Protein containing rep 100.0 2.9E-30 6.3E-35 278.1 20.9 266 80-379 55-348 (521)
34 cd00144 MPP_PPP_family phospho 100.0 2.4E-30 5.3E-35 277.0 20.1 218 701-939 1-224 (225)
35 PHA02713 hypothetical protein; 100.0 1.8E-29 3.9E-34 303.4 26.7 239 84-381 286-543 (557)
36 KOG0379 Kelch repeat-containin 100.0 1.3E-28 2.9E-33 290.4 28.3 245 167-439 53-301 (482)
37 PHA03098 kelch-like protein; P 100.0 4.1E-28 9E-33 292.7 30.7 249 150-440 264-512 (534)
38 PHA03098 kelch-like protein; P 100.0 4.6E-27 1E-31 283.6 30.6 234 92-381 285-521 (534)
39 TIGR03548 mutarot_permut cycli 99.9 6.7E-26 1.5E-30 256.2 28.0 224 84-356 55-316 (323)
40 PHA02790 Kelch-like protein; P 99.9 1.6E-25 3.4E-30 265.6 28.9 208 113-379 271-478 (480)
41 KOG1230 Protein containing rep 99.9 3.7E-25 8.1E-30 238.9 20.7 245 170-440 62-341 (521)
42 TIGR03547 muta_rot_YjhT mutatr 99.9 2E-24 4.4E-29 246.4 28.0 222 171-425 4-267 (346)
43 PRK14131 N-acetylneuraminic ac 99.9 1.8E-24 3.9E-29 249.4 27.1 247 87-377 69-374 (376)
44 PHA02790 Kelch-like protein; P 99.9 3.8E-24 8.3E-29 253.7 28.7 204 180-439 267-470 (480)
45 KOG4152 Host cell transcriptio 99.9 4.7E-25 1E-29 241.9 17.3 255 80-371 70-363 (830)
46 cd07425 MPP_Shelphs Shewanella 99.9 3.2E-22 7E-27 210.9 14.2 185 701-924 1-196 (208)
47 PRK13625 bis(5'-nucleosyl)-tet 99.9 2.7E-22 5.8E-27 217.1 12.6 130 699-830 2-145 (245)
48 cd07423 MPP_PrpE Bacillus subt 99.8 7.4E-21 1.6E-25 204.8 10.8 129 698-830 1-142 (234)
49 cd07422 MPP_ApaH Escherichia c 99.8 6E-21 1.3E-25 206.0 8.6 164 700-882 1-173 (257)
50 cd07413 MPP_PA3087 Pseudomonas 99.8 8.3E-20 1.8E-24 194.6 16.3 123 701-828 2-143 (222)
51 PRK00166 apaH diadenosine tetr 99.8 1E-19 2.3E-24 198.5 16.5 121 699-831 2-127 (275)
52 TIGR00668 apaH bis(5'-nucleosy 99.8 6.5E-20 1.4E-24 197.6 11.9 127 699-839 2-134 (279)
53 cd07421 MPP_Rhilphs Rhilph pho 99.8 5.3E-19 1.2E-23 190.2 15.7 82 699-780 3-85 (304)
54 PRK11439 pphA serine/threonine 99.8 3.5E-19 7.6E-24 189.6 11.1 120 698-828 17-146 (218)
55 cd07424 MPP_PrpA_PrpB PrpA and 99.8 9.3E-19 2E-23 185.1 12.7 147 698-862 1-157 (207)
56 PHA02239 putative protein phos 99.8 4.1E-18 8.9E-23 182.3 13.8 124 699-830 2-168 (235)
57 PRK09968 serine/threonine-spec 99.7 9.7E-18 2.1E-22 178.3 9.7 120 698-828 15-144 (218)
58 COG3055 Uncharacterized protei 99.7 1.1E-15 2.5E-20 164.6 22.4 281 85-437 30-372 (381)
59 KOG2437 Muskelin [Signal trans 99.5 4E-15 8.7E-20 164.4 2.5 317 86-439 255-612 (723)
60 COG3055 Uncharacterized protei 99.4 6.6E-12 1.4E-16 135.9 19.4 236 88-368 79-371 (381)
61 KOG2437 Muskelin [Signal trans 99.2 3.4E-12 7.3E-17 141.7 4.0 210 212-436 238-468 (723)
62 PF00149 Metallophos: Calcineu 99.0 3.6E-09 7.9E-14 105.9 11.6 78 699-782 2-85 (200)
63 COG0639 ApaH Diadenosine tetra 98.8 7.8E-09 1.7E-13 102.3 7.2 147 776-929 2-155 (155)
64 PLN02772 guanylate kinase 98.7 5.1E-08 1.1E-12 110.2 12.1 92 84-210 17-109 (398)
65 PF13964 Kelch_6: Kelch motif 98.7 3.5E-08 7.6E-13 79.5 6.8 50 91-175 1-50 (50)
66 PF13964 Kelch_6: Kelch motif 98.7 3E-08 6.6E-13 79.8 6.3 50 174-228 1-50 (50)
67 PLN02772 guanylate kinase 98.7 6.5E-08 1.4E-12 109.4 11.2 89 172-264 22-110 (398)
68 PF13415 Kelch_3: Galactose ox 98.6 6.8E-08 1.5E-12 77.4 6.5 49 113-183 1-49 (49)
69 PRK09453 phosphodiesterase; Pr 98.6 1.3E-07 2.8E-12 98.0 9.5 68 699-776 2-77 (182)
70 PF12850 Metallophos_2: Calcin 98.6 1E-06 2.2E-11 88.3 14.3 60 699-776 2-61 (156)
71 cd00841 MPP_YfcE Escherichia c 98.5 3.3E-07 7.2E-12 92.2 8.8 59 699-775 1-59 (155)
72 PF13415 Kelch_3: Galactose ox 98.4 3.3E-07 7.1E-12 73.5 5.7 48 184-236 1-49 (49)
73 PF13418 Kelch_4: Galactose ox 98.4 1.8E-07 3.8E-12 75.0 4.1 47 91-168 1-47 (49)
74 PF07646 Kelch_2: Kelch motif; 98.4 5.4E-07 1.2E-11 72.2 6.6 47 333-381 1-48 (49)
75 PF13418 Kelch_4: Galactose ox 98.4 2.2E-07 4.7E-12 74.4 4.1 46 227-274 1-47 (49)
76 cd07379 MPP_239FB Homo sapiens 98.4 1.3E-06 2.9E-11 85.8 10.4 118 699-911 1-120 (135)
77 PF07646 Kelch_2: Kelch motif; 98.4 1.1E-06 2.4E-11 70.4 6.5 46 227-275 1-49 (49)
78 cd07397 MPP_DevT Myxococcus xa 98.3 1.7E-06 3.8E-11 92.3 9.6 113 699-830 2-160 (238)
79 cd07388 MPP_Tt1561 Thermus the 98.3 4E-06 8.6E-11 89.4 12.2 71 698-775 5-75 (224)
80 PF01344 Kelch_1: Kelch motif; 98.3 7.3E-07 1.6E-11 70.6 4.7 45 227-274 1-46 (47)
81 TIGR00040 yfcE phosphoesterase 98.3 2.3E-06 4.9E-11 86.6 9.0 61 699-774 2-63 (158)
82 PF01344 Kelch_1: Kelch motif; 98.3 1E-06 2.2E-11 69.8 4.4 44 174-219 1-44 (47)
83 PF13854 Kelch_5: Kelch motif 98.3 1.6E-06 3.5E-11 67.0 5.4 40 171-210 1-41 (42)
84 PF13854 Kelch_5: Kelch motif 98.2 2.4E-06 5.2E-11 66.1 5.2 39 224-263 1-41 (42)
85 cd00838 MPP_superfamily metall 98.2 1.5E-05 3.2E-10 76.3 11.4 67 701-773 1-69 (131)
86 PF03089 RAG2: Recombination a 98.0 0.0011 2.4E-08 70.7 22.7 110 186-301 40-174 (337)
87 cd07394 MPP_Vps29 Homo sapiens 97.9 0.00022 4.8E-09 73.6 15.6 58 699-774 1-64 (178)
88 smart00612 Kelch Kelch domain. 97.9 1.3E-05 2.7E-10 63.0 4.9 47 115-185 1-47 (47)
89 PF03089 RAG2: Recombination a 97.9 0.0013 2.8E-08 70.3 20.9 148 84-261 15-189 (337)
90 smart00612 Kelch Kelch domain. 97.9 1.5E-05 3.1E-10 62.6 4.8 47 345-416 1-47 (47)
91 cd07392 MPP_PAE1087 Pyrobaculu 97.9 0.00025 5.4E-09 73.3 14.6 65 700-776 1-66 (188)
92 PF07250 Glyoxal_oxid_N: Glyox 97.8 0.0019 4.2E-08 69.5 20.0 149 149-318 45-199 (243)
93 PF07250 Glyoxal_oxid_N: Glyox 97.8 0.0008 1.7E-08 72.4 16.5 152 203-383 48-210 (243)
94 KOG0376 Serine-threonine phosp 97.7 6.9E-06 1.5E-10 93.5 -0.4 243 670-929 14-299 (476)
95 cd07403 MPP_TTHA0053 Thermus t 97.7 0.00039 8.5E-09 67.9 11.4 56 701-773 1-56 (129)
96 TIGR01640 F_box_assoc_1 F-box 97.6 0.012 2.7E-07 63.1 22.8 206 150-373 14-230 (230)
97 PRK05340 UDP-2,3-diacylglucosa 97.5 0.00032 7E-09 76.1 8.9 70 698-775 1-83 (241)
98 cd07399 MPP_YvnB Bacillus subt 97.4 0.0073 1.6E-07 64.3 18.3 69 882-953 135-213 (214)
99 cd07404 MPP_MS158 Microscilla 97.4 0.00011 2.5E-09 74.7 4.2 67 700-775 1-68 (166)
100 cd07400 MPP_YydB Bacillus subt 97.4 0.002 4.4E-08 63.7 12.9 41 733-774 38-80 (144)
101 PRK11340 phosphodiesterase Yae 97.4 0.00037 8.1E-09 77.0 7.6 70 698-775 50-125 (271)
102 cd07385 MPP_YkuE_C Bacillus su 97.3 0.00039 8.5E-09 74.2 6.7 70 698-775 2-76 (223)
103 TIGR01854 lipid_A_lpxH UDP-2,3 97.1 0.0015 3.2E-08 70.5 8.7 68 700-775 1-81 (231)
104 PRK11138 outer membrane biogen 97.1 0.31 6.6E-06 56.9 28.3 187 151-377 80-282 (394)
105 cd07391 MPP_PF1019 Pyrococcus 97.0 0.0018 3.9E-08 66.5 8.0 43 733-775 44-88 (172)
106 COG0622 Predicted phosphoester 97.0 0.026 5.7E-07 57.7 16.3 65 698-776 2-66 (172)
107 TIGR03729 acc_ester putative p 97.0 0.0016 3.5E-08 70.5 7.3 68 699-775 1-74 (239)
108 cd07390 MPP_AQ1575 Aquifex aeo 96.9 0.0029 6.3E-08 64.7 8.3 40 733-777 45-84 (168)
109 cd07395 MPP_CSTP1 Homo sapiens 96.9 0.054 1.2E-06 59.5 18.5 58 884-943 195-253 (262)
110 PF13360 PQQ_2: PQQ-like domai 96.8 0.88 1.9E-05 48.5 26.9 181 150-374 46-233 (238)
111 PRK11138 outer membrane biogen 96.8 0.49 1.1E-05 55.2 26.6 181 149-374 169-356 (394)
112 cd07396 MPP_Nbla03831 Homo sap 96.8 0.0033 7.3E-08 69.3 8.0 73 699-777 2-88 (267)
113 cd00840 MPP_Mre11_N Mre11 nucl 96.7 0.0026 5.6E-08 67.7 6.6 73 699-777 1-91 (223)
114 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.7 0.0033 7.1E-08 68.9 7.1 70 700-775 1-86 (262)
115 PRK04036 DNA polymerase II sma 96.6 0.0066 1.4E-07 72.9 9.7 78 698-777 244-345 (504)
116 TIGR03300 assembly_YfgL outer 96.5 2.5 5.4E-05 48.9 29.7 180 151-377 76-267 (377)
117 PF13360 PQQ_2: PQQ-like domai 96.4 1.6 3.5E-05 46.4 26.3 182 151-377 4-199 (238)
118 PHA02546 47 endonuclease subun 96.4 0.0057 1.2E-07 69.9 7.2 72 698-775 1-89 (340)
119 cd07398 MPP_YbbF-LpxH Escheric 96.4 0.0065 1.4E-07 64.5 6.9 26 882-907 176-201 (217)
120 cd07402 MPP_GpdQ Enterobacter 96.4 0.0099 2.2E-07 64.1 8.1 69 699-775 1-83 (240)
121 COG1409 Icc Predicted phosphoh 96.3 0.096 2.1E-06 58.0 15.9 73 699-779 2-82 (301)
122 KOG0918 Selenium-binding prote 96.2 0.00047 1E-08 76.4 -3.0 208 732-953 49-262 (476)
123 TIGR00619 sbcd exonuclease Sbc 96.2 0.01 2.2E-07 64.9 7.0 71 699-775 2-88 (253)
124 cd00839 MPP_PAPs purple acid p 96.1 0.028 6.1E-07 62.7 10.6 37 883-919 181-217 (294)
125 cd08165 MPP_MPPE1 human MPPE1 96.1 0.008 1.7E-07 60.7 5.4 44 733-776 41-90 (156)
126 TIGR00024 SbcD_rel_arch putati 96.1 0.016 3.4E-07 62.2 7.8 69 698-776 15-103 (225)
127 PRK11148 cyclic 3',5'-adenosin 96.0 0.017 3.8E-07 63.9 7.9 70 698-775 15-98 (275)
128 TIGR03300 assembly_YfgL outer 96.0 1.5 3.3E-05 50.6 24.3 185 148-377 113-305 (377)
129 PRK10966 exonuclease subunit S 95.9 0.014 3E-07 68.3 6.9 71 699-776 2-88 (407)
130 cd07386 MPP_DNA_pol_II_small_a 95.9 0.024 5.1E-07 61.7 8.3 73 701-776 2-95 (243)
131 cd07383 MPP_Dcr2 Saccharomyces 95.8 0.025 5.4E-07 59.4 7.7 41 733-773 44-87 (199)
132 cd07393 MPP_DR1119 Deinococcus 95.6 0.028 6.1E-07 60.6 7.2 40 733-774 44-83 (232)
133 cd08163 MPP_Cdc1 Saccharomyces 95.6 0.37 8E-06 52.8 15.9 23 882-904 203-225 (257)
134 TIGR01640 F_box_assoc_1 F-box 95.4 0.93 2E-05 48.6 18.2 164 201-381 14-187 (230)
135 cd07401 MPP_TMEM62_N Homo sapi 95.4 0.046 9.9E-07 59.9 8.1 27 887-913 190-216 (256)
136 TIGR00583 mre11 DNA repair pro 95.1 0.054 1.2E-06 63.1 7.8 73 698-776 4-124 (405)
137 COG2129 Predicted phosphoester 95.0 3 6.4E-05 44.2 19.4 203 698-943 4-217 (226)
138 cd08166 MPP_Cdc1_like_1 unchar 95.0 0.045 9.8E-07 57.0 6.1 42 733-774 45-92 (195)
139 COG2908 Uncharacterized protei 94.9 0.092 2E-06 55.8 8.3 195 702-944 2-228 (237)
140 cd08164 MPP_Ted1 Saccharomyces 94.7 0.076 1.7E-06 55.3 7.1 65 705-774 24-110 (193)
141 cd00216 PQQ_DH Dehydrogenases 94.6 14 0.00031 44.5 27.5 204 148-377 173-432 (488)
142 PF12768 Rax2: Cortical protei 94.5 2.1 4.5E-05 47.6 17.9 113 149-273 15-130 (281)
143 cd07380 MPP_CWF19_N Schizosacc 94.5 0.086 1.9E-06 52.8 6.5 68 701-773 1-68 (150)
144 cd07384 MPP_Cdc1_like Saccharo 94.3 0.081 1.8E-06 54.3 6.0 44 733-776 48-101 (171)
145 COG1407 Predicted ICC-like pho 93.9 0.19 4.2E-06 53.6 8.0 77 692-777 13-112 (235)
146 cd00216 PQQ_DH Dehydrogenases 93.8 11 0.00024 45.4 24.0 112 151-271 72-192 (488)
147 COG1408 Predicted phosphohydro 93.6 0.15 3.2E-06 56.7 6.9 71 698-776 45-119 (284)
148 PF07893 DUF1668: Protein of u 93.2 2.3 5E-05 48.7 15.9 123 237-381 75-217 (342)
149 cd00845 MPP_UshA_N_like Escher 93.1 0.16 3.6E-06 55.2 6.2 66 699-774 2-81 (252)
150 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.6 30 0.00065 42.2 25.1 112 151-272 80-199 (527)
151 PRK05137 tolB translocation pr 91.7 34 0.00074 40.5 25.4 148 201-379 226-374 (435)
152 COG4186 Predicted phosphoester 91.0 0.89 1.9E-05 45.0 7.7 40 733-776 48-87 (186)
153 PF14582 Metallophos_3: Metall 90.9 0.28 6E-06 51.7 4.5 74 698-777 6-104 (255)
154 PLN02533 probable purple acid 90.8 0.35 7.5E-06 57.1 5.8 70 698-776 140-212 (427)
155 cd07410 MPP_CpdB_N Escherichia 89.4 0.54 1.2E-05 52.1 5.6 64 699-774 2-94 (277)
156 PF07893 DUF1668: Protein of u 89.2 9.3 0.0002 43.8 15.6 121 183-323 75-213 (342)
157 KOG3662 Cell division control 88.9 0.74 1.6E-05 53.0 6.2 57 713-774 81-143 (410)
158 PRK04792 tolB translocation pr 87.5 70 0.0015 38.1 24.6 148 201-379 242-390 (448)
159 TIGR02800 propeller_TolB tol-p 86.7 69 0.0015 37.2 24.6 147 201-380 214-363 (417)
160 PRK03629 tolB translocation pr 86.0 81 0.0017 37.3 24.6 150 201-380 223-372 (429)
161 COG0420 SbcD DNA repair exonuc 85.9 1.9 4.1E-05 50.4 7.6 73 699-777 2-90 (390)
162 cd07378 MPP_ACP5 Homo sapiens 84.9 1.8 4E-05 47.7 6.5 23 884-906 190-212 (277)
163 COG1311 HYS2 Archaeal DNA poly 84.8 6.1 0.00013 46.3 10.6 190 699-929 227-451 (481)
164 COG1520 FOG: WD40-like repeat 84.4 85 0.0018 36.2 23.3 194 151-379 79-278 (370)
165 PF12768 Rax2: Cortical protei 83.5 22 0.00047 39.6 14.0 111 252-380 14-130 (281)
166 PF06874 FBPase_2: Firmicute f 83.4 1.1 2.4E-05 53.7 4.1 70 883-954 507-586 (640)
167 cd07412 MPP_YhcR_N Bacillus su 83.3 1.7 3.6E-05 48.6 5.3 66 699-774 2-87 (288)
168 KOG0310 Conserved WD40 repeat- 82.7 43 0.00094 39.1 16.0 67 182-264 120-186 (487)
169 TIGR03866 PQQ_ABC_repeats PQQ- 82.6 76 0.0016 34.3 23.5 93 150-264 53-147 (300)
170 KOG2055 WD40 repeat protein [G 82.4 1E+02 0.0022 36.1 18.6 148 184-373 269-419 (514)
171 cd07408 MPP_SA0022_N Staphyloc 82.1 2.4 5.2E-05 46.4 5.9 65 699-774 2-81 (257)
172 KOG2055 WD40 repeat protein [G 82.0 20 0.00043 41.6 12.9 130 148-301 278-408 (514)
173 cd00094 HX Hemopexin-like repe 81.1 74 0.0016 33.1 17.4 151 179-374 11-178 (194)
174 PRK04922 tolB translocation pr 79.9 1.3E+02 0.0029 35.4 24.3 147 201-380 228-377 (433)
175 cd07411 MPP_SoxB_N Thermus the 79.9 3.5 7.5E-05 45.4 6.2 35 734-774 55-94 (264)
176 PRK01742 tolB translocation pr 76.5 1.7E+02 0.0036 34.6 23.2 140 201-379 228-369 (429)
177 PF14583 Pectate_lyase22: Olig 76.1 1.4E+02 0.003 34.8 17.5 224 150-425 60-303 (386)
178 cd07387 MPP_PolD2_C PolD2 (DNA 76.1 62 0.0013 35.5 14.4 47 733-779 45-111 (257)
179 TIGR03075 PQQ_enz_alc_DH PQQ-d 74.6 1.8E+02 0.0038 35.6 19.3 131 179-327 64-201 (527)
180 KOG0646 WD40 repeat protein [G 74.0 58 0.0013 38.0 13.7 97 148-264 101-208 (476)
181 cd00842 MPP_ASMase acid sphing 73.8 5.8 0.00012 44.3 5.9 45 733-777 71-124 (296)
182 PF08268 FBA_3: F-box associat 73.1 36 0.00078 32.8 10.6 87 235-326 3-89 (129)
183 TIGR02800 propeller_TolB tol-p 72.9 1.9E+02 0.0041 33.5 23.1 142 150-317 214-355 (417)
184 PRK00178 tolB translocation pr 72.4 2E+02 0.0044 33.7 23.7 147 201-380 223-372 (430)
185 PRK05137 tolB translocation pr 71.4 2.2E+02 0.0047 33.6 22.1 196 150-380 226-421 (435)
186 PF08321 PPP5: PPP5 TPR repeat 71.4 8.7 0.00019 35.4 5.4 42 645-696 54-95 (95)
187 PRK04792 tolB translocation pr 70.7 2.3E+02 0.005 33.7 22.0 140 150-318 242-384 (448)
188 PF10282 Lactonase: Lactonase, 70.2 1.7E+02 0.0038 33.3 17.1 173 176-380 145-333 (345)
189 PRK09419 bifunctional 2',3'-cy 70.1 6.7 0.00014 52.5 6.2 66 699-774 662-735 (1163)
190 cd00094 HX Hemopexin-like repe 69.7 1.5E+02 0.0031 30.9 15.7 104 185-317 63-176 (194)
191 PF08450 SGL: SMP-30/Gluconola 69.7 1.6E+02 0.0035 31.5 24.8 192 148-379 20-221 (246)
192 PRK13684 Ycf48-like protein; P 69.1 2.1E+02 0.0046 32.6 21.8 199 160-424 119-322 (334)
193 PF02191 OLF: Olfactomedin-lik 68.4 1.9E+02 0.004 31.7 17.2 159 172-349 66-236 (250)
194 KOG0649 WD40 repeat protein [G 68.4 1.7E+02 0.0036 31.7 14.5 156 160-350 99-263 (325)
195 PLN00181 protein SPA1-RELATED; 68.1 3.3E+02 0.0071 35.0 20.8 146 185-372 545-691 (793)
196 cd07409 MPP_CD73_N CD73 ecto-5 67.7 12 0.00026 41.6 6.6 66 699-774 2-93 (281)
197 PRK11028 6-phosphogluconolacto 67.6 2.1E+02 0.0046 32.0 25.2 96 150-263 12-111 (330)
198 TIGR03866 PQQ_ABC_repeats PQQ- 66.3 1.9E+02 0.0042 31.0 22.1 92 150-264 11-105 (300)
199 KOG0306 WD40-repeat-containing 64.7 3.2E+02 0.007 34.1 17.6 95 151-264 337-444 (888)
200 PTZ00421 coronin; Provisional 64.5 3.2E+02 0.007 33.0 20.6 62 186-264 139-200 (493)
201 PF05096 Glu_cyclase_2: Glutam 64.3 1.3E+02 0.0027 33.2 13.3 92 150-264 68-159 (264)
202 KOG2863 RNA lariat debranching 64.0 10 0.00022 42.6 5.0 73 699-777 2-90 (456)
203 COG4880 Secreted protein conta 63.5 95 0.0021 36.0 12.4 100 148-262 404-503 (603)
204 TIGR00282 metallophosphoestera 63.4 15 0.00033 40.4 6.3 67 699-775 2-71 (266)
205 PF08268 FBA_3: F-box associat 62.9 1.4E+02 0.003 28.7 12.4 86 181-273 2-89 (129)
206 KOG1378 Purple acid phosphatas 62.7 21 0.00046 41.8 7.5 34 885-918 322-355 (452)
207 TIGR03074 PQQ_membr_DH membran 62.5 2.1E+02 0.0044 36.7 16.7 36 177-219 187-222 (764)
208 COG1520 FOG: WD40-like repeat 62.1 2.8E+02 0.0061 31.9 16.9 156 148-315 161-319 (370)
209 PF06433 Me-amine-dh_H: Methyl 61.7 1.1E+02 0.0025 34.7 12.8 103 148-264 15-128 (342)
210 PF04042 DNA_pol_E_B: DNA poly 61.4 12 0.00026 39.4 4.9 72 700-777 1-93 (209)
211 PRK02889 tolB translocation pr 60.2 3.4E+02 0.0075 31.9 25.2 147 201-379 220-368 (427)
212 COG3855 Fbp Uncharacterized pr 60.2 10 0.00022 43.8 4.2 40 733-777 193-232 (648)
213 COG1768 Predicted phosphohydro 60.2 18 0.00039 37.0 5.5 41 733-777 46-88 (230)
214 KOG2476 Uncharacterized conser 59.5 20 0.00043 41.7 6.3 71 697-772 5-75 (528)
215 PRK04922 tolB translocation pr 59.3 3.6E+02 0.0077 31.8 23.2 189 150-378 228-418 (433)
216 cd07406 MPP_CG11883_N Drosophi 58.4 18 0.0004 39.5 5.9 57 708-774 21-82 (257)
217 cd07405 MPP_UshA_N Escherichia 56.2 16 0.00034 40.7 5.0 69 700-774 3-86 (285)
218 COG0737 UshA 5'-nucleotidase/2 53.3 18 0.00039 43.9 5.3 71 697-774 26-114 (517)
219 PRK11028 6-phosphogluconolacto 52.8 3.7E+02 0.0081 30.0 24.9 97 151-264 58-158 (330)
220 PRK00178 tolB translocation pr 52.3 4.5E+02 0.0097 30.8 23.0 183 150-373 223-408 (430)
221 TIGR03074 PQQ_membr_DH membran 52.1 4.3E+02 0.0094 33.9 17.1 58 207-273 160-223 (764)
222 PTZ00235 DNA polymerase epsilo 51.9 38 0.00083 37.6 6.9 76 698-775 28-122 (291)
223 PF14870 PSII_BNR: Photosynthe 51.6 4E+02 0.0087 30.0 17.4 156 160-350 47-204 (302)
224 KOG0646 WD40 repeat protein [G 50.8 81 0.0017 36.9 9.3 158 230-436 84-249 (476)
225 cd00200 WD40 WD40 domain, foun 50.6 3E+02 0.0066 28.4 22.5 94 150-264 73-167 (289)
226 PRK04043 tolB translocation pr 50.3 4.9E+02 0.011 30.7 20.6 154 201-381 213-367 (419)
227 PF02897 Peptidase_S9_N: Proly 49.2 4.8E+02 0.01 30.3 19.5 203 149-379 149-366 (414)
228 KOG0310 Conserved WD40 repeat- 48.5 3.3E+02 0.0071 32.2 13.7 117 151-302 177-301 (487)
229 PF10282 Lactonase: Lactonase, 47.7 4.7E+02 0.01 29.7 21.5 202 151-383 16-236 (345)
230 PF09910 DUF2139: Uncharacteri 46.0 4.8E+02 0.01 29.3 18.0 136 253-421 77-219 (339)
231 KOG1432 Predicted DNA repair e 45.9 50 0.0011 37.3 6.6 43 733-776 103-148 (379)
232 PTZ00420 coronin; Provisional 45.6 6.7E+02 0.015 30.9 20.6 61 186-264 139-199 (568)
233 PF09910 DUF2139: Uncharacteri 45.1 4.9E+02 0.011 29.2 20.6 134 114-268 46-185 (339)
234 PTZ00421 coronin; Provisional 44.9 6.4E+02 0.014 30.5 18.7 51 240-302 139-190 (493)
235 cd07407 MPP_YHR202W_N Saccharo 44.4 32 0.0007 38.3 5.1 70 699-775 7-97 (282)
236 TIGR02658 TTQ_MADH_Hv methylam 43.3 5.7E+02 0.012 29.5 25.5 57 148-211 75-138 (352)
237 cd00200 WD40 WD40 domain, foun 43.3 3.9E+02 0.0084 27.5 24.6 63 185-264 63-125 (289)
238 PF14870 PSII_BNR: Photosynthe 42.6 5.4E+02 0.012 29.0 21.8 202 158-423 89-294 (302)
239 PRK13684 Ycf48-like protein; P 42.0 5.7E+02 0.012 29.1 17.4 165 152-352 154-322 (334)
240 PF05096 Glu_cyclase_2: Glutam 41.7 5.2E+02 0.011 28.5 13.6 114 232-376 49-162 (264)
241 PF02191 OLF: Olfactomedin-lik 41.6 5.1E+02 0.011 28.3 15.8 170 185-378 31-210 (250)
242 KOG3325 Membrane coat complex 40.5 1E+02 0.0023 30.6 7.0 104 700-846 3-108 (183)
243 cd07382 MPP_DR1281 Deinococcus 39.8 68 0.0015 35.2 6.6 65 699-774 1-69 (255)
244 KOG0278 Serine/threonine kinas 39.8 5.4E+02 0.012 28.1 12.8 83 202-303 206-290 (334)
245 PRK09420 cpdB bifunctional 2', 38.7 46 0.00099 41.7 5.6 68 697-774 25-121 (649)
246 cd08162 MPP_PhoA_N Synechococc 38.7 51 0.0011 37.3 5.5 69 700-774 3-90 (313)
247 KOG4649 PQQ (pyrrolo-quinoline 37.3 6E+02 0.013 28.0 13.1 93 201-318 33-125 (354)
248 TIGR01390 CycNucDiestase 2',3' 36.2 51 0.0011 41.1 5.5 66 699-774 4-98 (626)
249 PF03178 CPSF_A: CPSF A subuni 36.1 5.4E+02 0.012 28.8 13.5 139 185-349 42-189 (321)
250 PLN00033 photosystem II stabil 36.1 7.8E+02 0.017 28.9 23.1 90 267-380 271-365 (398)
251 PRK09419 bifunctional 2',3'-cy 35.6 49 0.0011 44.5 5.6 21 884-904 256-277 (1163)
252 KOG3339 Predicted glycosyltran 35.1 1.1E+02 0.0023 31.8 6.4 92 732-828 40-144 (211)
253 KOG2321 WD40 repeat protein [G 34.9 3.5E+02 0.0076 32.8 11.4 100 148-264 153-260 (703)
254 PRK11907 bifunctional 2',3'-cy 34.2 51 0.0011 42.1 5.1 67 698-774 116-212 (814)
255 PF03178 CPSF_A: CPSF A subuni 32.7 6.6E+02 0.014 28.1 13.5 122 150-297 62-189 (321)
256 PRK04043 tolB translocation pr 32.6 8.9E+02 0.019 28.5 21.9 193 149-380 212-409 (419)
257 KOG0308 Conserved WD40 repeat- 32.2 9.7E+02 0.021 29.7 14.5 125 184-327 129-265 (735)
258 TIGR02658 TTQ_MADH_Hv methylam 32.0 8.5E+02 0.018 28.1 16.8 75 185-268 13-91 (352)
259 PRK03629 tolB translocation pr 31.7 9.1E+02 0.02 28.4 21.8 189 150-379 223-414 (429)
260 KOG3947 Phosphoesterases [Gene 31.6 64 0.0014 35.4 4.5 64 698-777 62-128 (305)
261 PF02897 Peptidase_S9_N: Proly 29.6 9.3E+02 0.02 27.9 16.8 195 200-439 149-357 (414)
262 PF02239 Cytochrom_D1: Cytochr 29.2 9.4E+02 0.02 27.8 14.7 185 149-378 15-209 (369)
263 PF02239 Cytochrom_D1: Cytochr 28.4 8.7E+02 0.019 28.1 13.6 140 201-373 16-160 (369)
264 KOG0649 WD40 repeat protein [G 27.4 8.4E+02 0.018 26.6 19.2 51 151-211 137-188 (325)
265 KOG0296 Angio-associated migra 27.3 1E+03 0.022 27.5 13.8 92 151-264 87-180 (399)
266 PF13088 BNR_2: BNR repeat-lik 26.8 4.9E+02 0.011 28.1 10.9 135 151-296 135-275 (275)
267 TIGR01530 nadN NAD pyrophospha 26.5 1.2E+02 0.0026 37.2 6.4 37 733-774 52-93 (550)
268 COG5184 ATS1 Alpha-tubulin sup 26.5 6.3E+02 0.014 30.1 11.6 212 186-423 69-310 (476)
269 PRK09558 ushA bifunctional UDP 26.3 44 0.00094 41.0 2.6 71 698-774 35-120 (551)
270 PRK05583 ribosomal protein L7A 25.8 62 0.0013 30.3 2.9 69 875-944 13-90 (104)
271 PF09637 Med18: Med18 protein; 25.0 73 0.0016 34.8 3.8 41 883-926 139-179 (250)
272 PTZ00422 glideosome-associated 24.5 81 0.0018 36.8 4.1 22 886-907 239-260 (394)
273 TIGR00282 metallophosphoestera 23.8 83 0.0018 34.7 3.9 39 733-775 2-41 (266)
274 KOG1332 Vesicle coat complex C 23.1 1E+03 0.022 26.1 13.6 52 319-381 245-297 (299)
275 PF02875 Mur_ligase_C: Mur lig 22.6 2.9E+02 0.0062 24.6 6.6 72 696-772 10-82 (91)
276 KOG4649 PQQ (pyrrolo-quinoline 22.5 1.1E+03 0.023 26.1 13.4 95 151-269 34-130 (354)
277 KOG2321 WD40 repeat protein [G 22.4 6.5E+02 0.014 30.7 10.7 66 225-302 131-197 (703)
278 COG0634 Hpt Hypoxanthine-guani 21.4 5.5E+02 0.012 26.5 8.8 85 668-756 9-118 (178)
279 KOG0772 Uncharacterized conser 20.3 1.2E+03 0.027 28.1 12.2 74 290-374 374-448 (641)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2e-78 Score=609.19 Aligned_cols=284 Identities=41% Similarity=0.734 Sum_probs=271.7
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 001895 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (999)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 727 (999)
+++.|+.|.+.. .+.+.++..||.++.+||.+|++|++++.|++|||||||||+||+.+|+..|-++..
T Consensus 3 ldr~ie~L~~~~----------li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t- 71 (303)
T KOG0372|consen 3 LDRQIEQLRRCE----------LIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPET- 71 (303)
T ss_pred HHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCC-
Confidence 578899997753 678999999999999999999999999999999999999999999999999988876
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhh
Q 001895 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (999)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (999)
+|||||||||||.+|+|++.||++||++||++|+|||||||++.++..|||++||.+|||. ..+|+.+.++|
T Consensus 72 -----~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~---~~vWr~c~eiF 143 (303)
T KOG0372|consen 72 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGS---ANVWRYCTEIF 143 (303)
T ss_pred -----ceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCC---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999995 47999999999
Q ss_pred cccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHH
Q 001895 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (999)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (999)
++||++|+|+++|||||||++|.+.++++|+.+.|..+++.++ .++|||||||.+ ..||..++||+| +.||.+++
T Consensus 144 dyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g-~m~DllWSDPee---~~g~~~SPRGaG-ylFG~dvv 218 (303)
T KOG0372|consen 144 DYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDG-AMCDLLWSDPEE---GPGWGLSPRGAG-YLFGEDVV 218 (303)
T ss_pred HhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCCC-cchheeccCccc---CCCcccCCCCcc-ccccHHHH
Confidence 9999999999999999999999999999999999999999877 899999999997 369999999999 78999999
Q ss_pred HHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCC
Q 001895 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLP 955 (999)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 955 (999)
++||+.||+++|+|+||.|++||++.++++|+|||||||||++++|.||||.++++..-.|++|...+
T Consensus 219 ~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~lde~~~~~F~vFeaa~ 286 (303)
T KOG0372|consen 219 ESFLEANGLSLICRAHQLVMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILELDEDLDKDFRVFEAAP 286 (303)
T ss_pred HHHHHhCChHHHHHHHHHHHhhHHHhcCCceEEEecCCchhhhcCChHHheeeccccCcceEeeecch
Confidence 99999999999999999999999999999999999999999999999999999999999999997654
No 2
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.9e-72 Score=619.50 Aligned_cols=295 Identities=51% Similarity=0.892 Sum_probs=275.8
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhC-CCCCC
Q 001895 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYG-SPSTA 726 (999)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g-~~~~~ 726 (999)
++++|..++..............|+.+||.+||..+.++|..+|+++++++||+|||||||||.||+++|+..| +|+..
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~~ 88 (331)
T KOG0374|consen 9 LDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPDQ 88 (331)
T ss_pred HHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCcc
Confidence 56677777765443333333455899999999999999999999999999999999999999999999999999 88766
Q ss_pred CCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhh
Q 001895 727 GDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRL 806 (999)
Q Consensus 727 ~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~ 806 (999)
+|||||||||||++|+|||.||+++|++||++||+||||||++.+|..|||++||.+||++ ..+|+.|+++
T Consensus 89 ------~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~---~~~w~~F~~~ 159 (331)
T KOG0374|consen 89 ------NYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGE---IKLWKAFNDA 159 (331)
T ss_pred ------cEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcch---HHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999975 4799999999
Q ss_pred hcccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHH
Q 001895 807 FNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDR 886 (999)
Q Consensus 807 f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~ 886 (999)
|++||++|+|+++|+|+||||+|.+.++++|+.|.||.++++.+ +++|||||||+. .+.||.+|.||.+ +.||+++
T Consensus 160 f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~g-ll~DLlWsdp~~--~~~g~~~n~Rg~s-~~fg~~~ 235 (331)
T KOG0374|consen 160 FNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKG-LLCDLLWSDPDD--DVPGWEENDRGVS-FTFGPAV 235 (331)
T ss_pred HhhCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccc-eeeeeeecCCCC--CCCCcccCCCcee-eEecHHH
Confidence 99999999999999999999999999999999999998888766 999999999986 4789999999999 7999999
Q ss_pred HHHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCC
Q 001895 887 VMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLP 955 (999)
Q Consensus 887 ~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 955 (999)
+++||+++++++||||||+|+||||+|+++++|||||||+|||.++|+||+|.|++++.+.+++++|..
T Consensus 236 v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~~ 304 (331)
T KOG0374|consen 236 VEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEFDNAGAVMRVDKNLKCSFVILRPEG 304 (331)
T ss_pred HHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccccCCceEEEEECCCCeEEEEEecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999954
No 3
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-71 Score=550.36 Aligned_cols=286 Identities=37% Similarity=0.707 Sum_probs=269.6
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 001895 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (999)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 727 (999)
.|+.|+..-+. ..|+++|+..||+.++++|..|.++..++.|+.|+|||||||.||+++|+..|-.+..
T Consensus 6 ~d~wi~~vk~c----------kyLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~t- 74 (306)
T KOG0373|consen 6 LDQWIETVKKC----------KYLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDT- 74 (306)
T ss_pred HHHHHHHHHHc----------CCCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCc-
Confidence 45566665443 2689999999999999999999999999999999999999999999999998877655
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhh
Q 001895 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (999)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (999)
+|||+|||||||.+|+|++.+|+.||.+||.+|.|||||||.+.+...|||++||..|||.. ..|+.+.++|
T Consensus 75 -----nYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGna---n~wkycckVF 146 (306)
T KOG0373|consen 75 -----NYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNA---NVWKYCCKVF 146 (306)
T ss_pred -----ceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCc---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999975 7999999999
Q ss_pred cccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHH
Q 001895 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (999)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (999)
+.|+++|+|+++|||||||++|.+.++++|+-|.|-.++|.++ .++||+||||++ ++.|.-++||+| +.||.+++
T Consensus 147 D~LtlaAiID~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G-~fcDlmWSDPed---ve~W~vSpRGAG-wlFGskVt 221 (306)
T KOG0373|consen 147 DFLTLAAIIDEKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEG-PFCDLMWSDPED---VETWAVSPRGAG-WLFGSKVT 221 (306)
T ss_pred hhhhHHHHhcCcEEEEcCCCCccceeHHHHHhHHhhccCCCCC-CccceeccChhh---hhhheeCCCCcc-eeechhhh
Confidence 9999999999999999999999999999999999999999887 899999999985 788999999999 57999999
Q ss_pred HHHHHHcCCcEEEEeccccccceEEecCCe-EEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCCCC
Q 001895 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGH-LITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 957 (999)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~-~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 957 (999)
.+|+..|+|++|+|+||.|++||++++++| |+|||||||||++++|.|+||.++++++-++|+|..+|..
T Consensus 222 ~eF~~iN~L~LicRaHQLV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~d~~~~r~~k~F~avpd~ 292 (306)
T KOG0373|consen 222 TEFNHINNLNLICRAHQLVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSFDDNLERETKIFSAVPDN 292 (306)
T ss_pred HHHHhccchHHHHhHHHHHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEecccCCccceeeeecCCc
Confidence 999999999999999999999999999888 9999999999999999999999999999999999877654
No 4
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=1.5e-68 Score=586.88 Aligned_cols=294 Identities=46% Similarity=0.835 Sum_probs=275.2
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 001895 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (999)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 727 (999)
++++|+.+++.+.+++. ....|++++|.+||++|+++|++||+++++..|++|||||||||.+|+++|+..++++..
T Consensus 11 ~~~~i~~~~~~~~~~~~--~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~- 87 (320)
T PTZ00480 11 VDNIIERLLSVRGSKPG--KNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPES- 87 (320)
T ss_pred HHHHHHHHHhccccCcc--ccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcc-
Confidence 78899999987766542 234689999999999999999999999999999999999999999999999999998765
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhh
Q 001895 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (999)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (999)
+|||||||||||++++||+.+|++||+.||.+|++||||||.+.++..|||..||..+|+ ..+|..++++|
T Consensus 88 -----~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~----~~l~~~~~~~F 158 (320)
T PTZ00480 88 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT----IKLWKTFTDCF 158 (320)
T ss_pred -----eEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999995 36999999999
Q ss_pred cccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHH
Q 001895 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (999)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (999)
++||+||+|+++||||||||+|.+.++++|+.+.||.+.+..+ +++|+|||||.+ ...+|.+|.||.| +.||++++
T Consensus 159 ~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWSDP~~--~~~~~~~s~RG~g-~~FG~~~~ 234 (320)
T PTZ00480 159 NCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTG-LLCDLLWSDPDK--DVQGWADNERGVS-YVFSQEIV 234 (320)
T ss_pred HhccHhheecCcEEEEcCCcCcccCCHHHHhcccCCCCCCccc-hhhheeecCccc--ccCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887654 899999999986 3578999999999 68999999
Q ss_pred HHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCCCC
Q 001895 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 957 (999)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 957 (999)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++.+.++.|.|.+..
T Consensus 235 ~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 235 QVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQG 304 (320)
T ss_pred HHHHHhCCCcEEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccEEEEEECCCCcEeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876554
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=4.5e-68 Score=584.32 Aligned_cols=286 Identities=33% Similarity=0.604 Sum_probs=256.6
Q ss_pred hhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecC----CeEEEecCCCCHHHHHHHHHHhC
Q 001895 646 SVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKA----PIKIFGDLHGQFGDLMRLFDEYG 721 (999)
Q Consensus 646 ~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~----~i~vvGDiHG~~~~L~~il~~~g 721 (999)
+.++++|+.|++.. .|+++++.+||++|+++|++||+|+++.. |++|||||||||.+|+++|+..|
T Consensus 5 ~~~~~~i~~~~~~~----------~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g 74 (321)
T cd07420 5 DHIDALIEAFKEKQ----------LLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNG 74 (321)
T ss_pred HHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcC
Confidence 34788999998642 47899999999999999999999999986 89999999999999999999999
Q ss_pred CCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhh
Q 001895 722 SPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWH 801 (999)
Q Consensus 722 ~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~ 801 (999)
+++... +|||||||||||++|+||+.+|++||+.||++|++||||||.+.++..|||++||..+|+.. ...+|.
T Consensus 75 ~~~~~~-----~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~-~~~l~~ 148 (321)
T cd07420 75 LPSPEN-----PYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLH-GKKILR 148 (321)
T ss_pred CCCccc-----eEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCcc-HHHHHH
Confidence 886432 79999999999999999999999999999999999999999999999999999999999863 567999
Q ss_pred hhhhhhcccceeEEEcCcEEEecCCccCcccCHHHhhhccCCccc-----CC---------------------CCceeee
Q 001895 802 RINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITM-----EA---------------------GSIVLMD 855 (999)
Q Consensus 802 ~~~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~-----~~---------------------~~~~~~d 855 (999)
.++++|++||+||+|+++||||||||++ ..++++|+.++|+... +. ...++.|
T Consensus 149 ~~~~~F~~LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 227 (321)
T cd07420 149 LLEDVFSWLPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILD 227 (321)
T ss_pred HHHHHHHhCCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhhe
Confidence 9999999999999999999999999997 5789999999885211 11 0136789
Q ss_pred cccCCCCCCCCCCCCccCCCCCCceeeCHHHHHHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeE
Q 001895 856 LLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAG 935 (999)
Q Consensus 856 llWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~g 935 (999)
+|||||.+. ...|.++.||.| +.||++++++||++||+++||||||++++||+++++++|||||||+|||+..+|+|
T Consensus 228 lLWSDP~~~--~~~~~~~~RG~g-~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~g 304 (321)
T cd07420 228 ILWSDPKAQ--KGCKPNTFRGGG-CYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRG 304 (321)
T ss_pred eeecCCccC--CCCCccCCCCCc-cccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccE
Confidence 999999853 233666789999 68999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCceEEeEEe
Q 001895 936 AILVLGRDLVVVPKLI 951 (999)
Q Consensus 936 a~l~~~~~~~~~~~~~ 951 (999)
|+|.|++++.+.+..+
T Consensus 305 avl~i~~~~~~~f~~~ 320 (321)
T cd07420 305 AYIKLGPDLTPHFVQY 320 (321)
T ss_pred EEEEECCCCceeEEEe
Confidence 9999999988877655
No 6
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=2e-67 Score=583.67 Aligned_cols=303 Identities=79% Similarity=1.341 Sum_probs=279.2
Q ss_pred HHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCC--CC
Q 001895 651 VIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTA--GD 728 (999)
Q Consensus 651 ~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~--~~ 728 (999)
+|.+||+|+.|+.+...++.|+++++.+||++|+++|++||+++++..|++|||||||||.+|.++|+.+|+++.. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~ 80 (311)
T cd07419 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80 (311)
T ss_pred ChHHhcCcccccCccccccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCC
Confidence 4788999999999888888999999999999999999999999999999999999999999999999999988641 12
Q ss_pred ccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCc--cchhhhhhhhhh
Q 001895 729 IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGER--DGIWAWHRINRL 806 (999)
Q Consensus 729 ~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~--~~~~~~~~~~~~ 806 (999)
....+|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||..||..+|+.. ....+|..++++
T Consensus 81 ~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~ 160 (311)
T cd07419 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRL 160 (311)
T ss_pred CcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHH
Confidence 222379999999999999999999999999999999999999999999999999999999999862 335799999999
Q ss_pred hcccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCC---CCCCc-eee
Q 001895 807 FNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNA---RGPGL-VTF 882 (999)
Q Consensus 807 f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~---rg~~~-~~f 882 (999)
|++||+++++++++|||||||+|.+.++++|+.+.||...+....+++|+|||||.+.+...+|.++. ||.|. +.|
T Consensus 161 f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~f 240 (311)
T cd07419 161 FEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240 (311)
T ss_pred HHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeE
Confidence 99999999999999999999999999999999999998544444589999999999765567888876 99995 799
Q ss_pred CHHHHHHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEecc
Q 001895 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHP 953 (999)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 953 (999)
|++++++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|++++++.+.+++|+|
T Consensus 241 g~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~~~~~~~~~ 311 (311)
T cd07419 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDLTIIPKLIHP 311 (311)
T ss_pred CHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 7
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=7.7e-67 Score=570.18 Aligned_cols=283 Identities=43% Similarity=0.772 Sum_probs=266.8
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 001895 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (999)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 727 (999)
++++|+++++.. .|+.+++.+||++|+++|++||+++++..|++|||||||||.+|+++|+..++++..
T Consensus 2 ~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~- 70 (285)
T cd07415 2 LDKWIEQLKKCE----------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDT- 70 (285)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCC-
Confidence 467888887632 478999999999999999999999999999999999999999999999999987765
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhh
Q 001895 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (999)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (999)
+|||||||||||++++||+.+|++||+.+|.+|++||||||.+.++..|||.+||..+|+. ..+|..++++|
T Consensus 71 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~---~~l~~~~~~~f 142 (285)
T cd07415 71 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGN---ANVWKYCTDLF 142 (285)
T ss_pred -----eEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCc---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999975 36999999999
Q ss_pred cccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHH
Q 001895 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (999)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (999)
++||++|++++++|||||||+|.+.++++|++++||.+++..+ ++.|+|||||.+. .+|.+|.||.| +.||++++
T Consensus 143 ~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~-~~~dllWsDP~~~---~~~~~~~Rg~g-~~fg~~~~ 217 (285)
T cd07415 143 DYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEG-PMCDLLWSDPDDI---EGWGISPRGAG-YLFGQDVV 217 (285)
T ss_pred HHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccCCCCCCCCC-CccceEecCCCcc---CCCCcCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887654 7899999999863 68999999999 68999999
Q ss_pred HHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccC
Q 001895 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPL 954 (999)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~ 954 (999)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++++.++.|.|.
T Consensus 218 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i~~~~~~~~~~~~~~ 284 (285)
T cd07415 218 EEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAA 284 (285)
T ss_pred HHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999988765
No 8
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=4.7e-67 Score=572.81 Aligned_cols=291 Identities=38% Similarity=0.750 Sum_probs=270.1
Q ss_pred hhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCC
Q 001895 646 SVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPST 725 (999)
Q Consensus 646 ~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~ 725 (999)
++++++|..+++...+.. .....++.++|.+||++|+++|++||+++++..|++|||||||||.+|+++|+.+++++.
T Consensus 2 ~~~~~~i~~~~~~~~~~~--~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~ 79 (294)
T PTZ00244 2 SLVQTLIEKMLTVKGNRT--QRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPY 79 (294)
T ss_pred chHHHHHHHHHhcccCCC--ccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCc
Confidence 356888888888654432 234468999999999999999999999999999999999999999999999999999876
Q ss_pred CCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhh
Q 001895 726 AGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINR 805 (999)
Q Consensus 726 ~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~ 805 (999)
+ +|||||||||||++|+||+.+|+++|+.+|.+|++||||||.+.++..|||.+||..+|+ ..+|..+++
T Consensus 80 ~------~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~ 149 (294)
T PTZ00244 80 S------NYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN----IKLFKAFTD 149 (294)
T ss_pred c------cEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh----HHHHHHHHH
Confidence 5 899999999999999999999999999999999999999999999999999999999996 359999999
Q ss_pred hhcccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHH
Q 001895 806 LFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPD 885 (999)
Q Consensus 806 ~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~ 885 (999)
+|++||++|++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.+ ...+|.+|.||.| +.||++
T Consensus 150 ~f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~ 225 (294)
T PTZ00244 150 VFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRG-ILCDLLWADPED--EVRGFLESDRGVS-YLFGED 225 (294)
T ss_pred HHHhCchheEecCeeEEEcCCCCchhhHHHHhhhhccccCCCccc-hhheeeecCccc--ccCCCCcCCCCCc-cccCHH
Confidence 999999999999999999999999999999999999999887654 899999999985 3578999999999 689999
Q ss_pred HHHHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEec
Q 001895 886 RVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIH 952 (999)
Q Consensus 886 ~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~ 952 (999)
++++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++.|.
T Consensus 226 ~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~f~~~~ 292 (294)
T PTZ00244 226 IVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIP 292 (294)
T ss_pred HHHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCccccCCCCceEEEEEECCCCcEeEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 9
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=6.8e-67 Score=572.78 Aligned_cols=290 Identities=49% Similarity=0.869 Sum_probs=270.4
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 001895 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (999)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 727 (999)
++++|+.+++.+.++. .....|+++++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..++++.+
T Consensus 2 ~~~~i~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~- 78 (293)
T cd07414 2 IDSIIERLLEVRGSRP--GKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPES- 78 (293)
T ss_pred HHHHHHHHHhccccCC--cccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcc-
Confidence 4678888887665543 2344689999999999999999999999999999999999999999999999999998765
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhh
Q 001895 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (999)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (999)
+|||||||||||++++||+.+|++||+.||.++++||||||.+.++..|||..||..+|+ ..+|..++++|
T Consensus 79 -----~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~f 149 (293)
T cd07414 79 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN----IKLWKTFTDCF 149 (293)
T ss_pred -----eEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999985 46999999999
Q ss_pred cccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHH
Q 001895 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (999)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (999)
++||++|++++++|||||||+|.+.++++|+.++||.+++..+ ++.|+|||||.. ...+|.+|.||.| +.||++++
T Consensus 150 ~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~ 225 (293)
T cd07414 150 NCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQG-LLCDLLWSDPDK--DVQGWGENDRGVS-FTFGKDVV 225 (293)
T ss_pred HHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccCCCCCCchh-hHhhhhccCccc--ccCCCccCCCCcc-eecCHHHH
Confidence 9999999999999999999999999999999999999877654 899999999986 3578999999999 68999999
Q ss_pred HHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEecc
Q 001895 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHP 953 (999)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 953 (999)
++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++.|.|
T Consensus 226 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~~~~~~~ 291 (293)
T cd07414 226 AKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 291 (293)
T ss_pred HHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCcccCCCCceEEEEEECCCCcEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999998875
No 10
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=1.8e-66 Score=569.80 Aligned_cols=286 Identities=41% Similarity=0.749 Sum_probs=266.3
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 001895 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (999)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 727 (999)
++++|+.+++.. .|+++++.+||++|+++|++||+++++..|++|||||||||.+|+++|+..+.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~- 71 (303)
T PTZ00239 3 IDRHIATLLNGG----------CLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNA- 71 (303)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 577888887632 478999999999999999999999999999999999999999999999999987655
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhh
Q 001895 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (999)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (999)
+|||||||||||++++||+.+|++||+.||.+|++||||||.+.++..|||.+||..+|+.. .+|+.++++|
T Consensus 72 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~---~~~~~~~~~f 143 (303)
T PTZ00239 72 -----NYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNS---NPWRLFMDVF 143 (303)
T ss_pred -----eEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcCh---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999853 5899999999
Q ss_pred cccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHH
Q 001895 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (999)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (999)
++||++|+|++++|||||||+|.+.++++|+.++||.+++..+ +++|+|||||.+ ..+|.+|.||.| +.||++++
T Consensus 144 ~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~~~Rg~g-~~fg~~~~ 218 (303)
T PTZ00239 144 DCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEG-PFCDLMWSDPEE---VEYWAVNSRGAG-YLFGAKVT 218 (303)
T ss_pred HhCchheEEcCeEEEEcCccCcccccHhhhccccCCCCCCCCC-CceeeEecCccc---cCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999987655 789999999985 468999999999 68999999
Q ss_pred HHHHHHcCCcEEEEeccccccceEEecC-CeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCCCC
Q 001895 888 MEFCNNNDLQLIVRAHECVMDGFERFAQ-GHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 957 (999)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~-~~~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 957 (999)
++||++||+++||||||++++||+++++ ++|||||||||||+..+|+||+|.+++++.+.++.|.|.+..
T Consensus 219 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i~~~~~~~~~~~~~~~~~ 289 (303)
T PTZ00239 219 KEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPES 289 (303)
T ss_pred HHHHHHCCCcEEEEcChhhccceEEEeCCCeEEEEECCCcccCCCCceEEEEEECCCCcEeeEEeeCCCcc
Confidence 9999999999999999999999998665 559999999999999999999999999999999999887653
No 11
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=1.9e-65 Score=565.63 Aligned_cols=291 Identities=35% Similarity=0.639 Sum_probs=268.3
Q ss_pred CChhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCC----eEEEecCCCCHHHHHHHHHH
Q 001895 644 INSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAP----IKIFGDLHGQFGDLMRLFDE 719 (999)
Q Consensus 644 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~----i~vvGDiHG~~~~L~~il~~ 719 (999)
+.++++++|+.+++.+ .|+.+++.+||++|.++|++||+++++..| ++|||||||||.+|+++|+.
T Consensus 12 ~~~~~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~ 81 (316)
T cd07417 12 TLEFVKEMIEWFKDQK----------KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL 81 (316)
T ss_pred CHHHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence 4577899999997742 478899999999999999999999999866 99999999999999999999
Q ss_pred hCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhh
Q 001895 720 YGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWA 799 (999)
Q Consensus 720 ~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~ 799 (999)
.|+++..+ +|||||||||||++|+|||.+|++||+.+|++|++||||||.+.++..|||..||..+|+. .+
T Consensus 82 ~g~~~~~~-----~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~----~l 152 (316)
T cd07417 82 NGLPSETN-----PYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNE----QM 152 (316)
T ss_pred cCCCCccC-----eEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccH----HH
Confidence 99876542 7999999999999999999999999999999999999999999999999999999999864 58
Q ss_pred hhhhhhhhcccceeEEEcCcEEEecCCc-cCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCC
Q 001895 800 WHRINRLFNWLPLAALIEKKIICMHGGI-GRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPG 878 (999)
Q Consensus 800 ~~~~~~~f~~LPlaa~i~~~il~vHgGi-~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~ 878 (999)
|..++++|++||+++++++++||||||| ++...++++|++++||.+.+..+ +++|+|||||.+. .+|.+|.||.|
T Consensus 153 ~~~~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~---~~~~~s~Rg~g 228 (316)
T cd07417 153 FDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSG-LMCELLWSDPQPQ---PGRSPSKRGVG 228 (316)
T ss_pred HHHHHHHHHhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccc-cceeeeecCCCCC---CCCCccCCCCc
Confidence 9999999999999999999999999999 56788999999999998776544 8999999999863 58999999999
Q ss_pred ceeeCHHHHHHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcC-CceEEeEEeccCCCC
Q 001895 879 LVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGR-DLVVVPKLIHPLPPA 957 (999)
Q Consensus 879 ~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~~-~~~~~~~~~~~~~~~ 957 (999)
+.||++++++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++ ++.+.++.|.+.+..
T Consensus 229 -~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~ 307 (316)
T cd07417 229 -CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHP 307 (316)
T ss_pred -eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999 899999999877654
Q ss_pred C
Q 001895 958 I 958 (999)
Q Consensus 958 ~ 958 (999)
.
T Consensus 308 ~ 308 (316)
T cd07417 308 N 308 (316)
T ss_pred C
Confidence 4
No 12
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=1.1e-64 Score=558.94 Aligned_cols=288 Identities=35% Similarity=0.623 Sum_probs=262.0
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 001895 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (999)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 727 (999)
++-+++++++.. .|+++++.+||++|+++|++||+++++..|++||||||||+.+|.++|+..+.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~- 71 (305)
T cd07416 3 IDVLKAHFMREG----------RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANT- 71 (305)
T ss_pred HHHHHHHHHcCC----------CCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 345667776532 478999999999999999999999999999999999999999999999999988765
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhh
Q 001895 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (999)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (999)
+|||||||||||++|+||+.+|++||+.||.+|++||||||.+.++..|||..||..+|+ ..+|..++++|
T Consensus 72 -----~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~----~~l~~~~~~~f 142 (305)
T cd07416 72 -----RYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMEAF 142 (305)
T ss_pred -----eEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhcc----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999985 45899999999
Q ss_pred cccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCC----CCCccC-CCCCCceee
Q 001895 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSV----EGLRPN-ARGPGLVTF 882 (999)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~----~~~~~n-~rg~~~~~f 882 (999)
++||+++++++++|||||||+|.+.++++|++++||.+.+..+ +++|+|||||.+.+.. .+|.+| .||.| +.|
T Consensus 143 ~~LPlaaii~~~i~~vHGGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g-~~f 220 (305)
T cd07416 143 DCLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFG-PMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCS-YFY 220 (305)
T ss_pred hhccceeEEcCCEEEEcCCCCcccccHHHhcccCCCCCCCCCC-cceeeeecCcccccccccccccccccCCCCCc-eec
Confidence 9999999999999999999999999999999999998877654 8899999999764321 258776 89999 789
Q ss_pred CHHHHHHHHHHcCCcEEEEeccccccceEEecCC------eEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCCC
Q 001895 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQG------HLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPP 956 (999)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~------~~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~ 956 (999)
|++++++||++||+++||||||++++||++++++ +||||||||||||..+|+||+|.++++. +.++.+.+.|.
T Consensus 221 G~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~~-~~~~~~~~~~~ 299 (305)
T cd07416 221 SYRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPH 299 (305)
T ss_pred CHHHHHHHHHHcCCeEEEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEEcCCc-ceEEEecCCCC
Confidence 9999999999999999999999999999998886 9999999999999999999999999985 68888877665
Q ss_pred CC
Q 001895 957 AI 958 (999)
Q Consensus 957 ~~ 958 (999)
.+
T Consensus 300 ~~ 301 (305)
T cd07416 300 PY 301 (305)
T ss_pred CC
Confidence 43
No 13
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=2.1e-64 Score=549.58 Aligned_cols=269 Identities=47% Similarity=0.903 Sum_probs=255.0
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHH
Q 001895 671 LDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLET 750 (999)
Q Consensus 671 l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~ev 750 (999)
++++++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..+.++.. +|||||||||||++++||
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~------~~vfLGD~VDrG~~s~e~ 74 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDT------NYVFLGDYVDRGPFSIEV 74 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCc------eEEEeCCccCCCCChHHH
Confidence 35789999999999999999999999999999999999999999999999987665 899999999999999999
Q ss_pred HHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhhcccceeEEEcCcEEEecCCccCc
Q 001895 751 ITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRS 830 (999)
Q Consensus 751 l~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~~ 830 (999)
+.+|++||+.+|.+|++||||||.+.++..|||..||..+|+. .+|+.++++|++||++|++++++|||||||+|.
T Consensus 75 l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~----~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~ 150 (271)
T smart00156 75 ILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGE----EIYEKFQEAFSWLPLAALIDNKILCMHGGLSPD 150 (271)
T ss_pred HHHHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcCH----HHHHHHHHHHhhChhheEEcCeEEEEecCCCCc
Confidence 9999999999999999999999999999999999999999963 699999999999999999999999999999999
Q ss_pred ccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHHHHHHHHcCCcEEEEeccccccce
Q 001895 831 INHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGF 910 (999)
Q Consensus 831 ~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~ 910 (999)
+.++++|++++||.+.+... ++.|+|||||.. ...+|.+|.||.| +.||++++++||++||+++||||||++++||
T Consensus 151 ~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~ 226 (271)
T smart00156 151 LTTLDDIRKLKRPQEPPDEG-LLIDLLWSDPDQ--PVDGFQPSIRGAS-YYFGPDAVDEFLKKNNLKLIIRAHQVVDDGY 226 (271)
T ss_pred cCCHHHHhcccCCCCCCchh-hhhheeecCCCc--ccCCCccCCCCCc-cccCHHHHHHHHHHCCCeEEEecCcccCCcE
Confidence 99999999999998876544 899999999974 3578999999999 6899999999999999999999999999999
Q ss_pred EEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEecc
Q 001895 911 ERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHP 953 (999)
Q Consensus 911 ~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 953 (999)
+++++++|||||||+|||+..+|+||+|.+++++.+.++.+.|
T Consensus 227 ~~~~~~~~~TvfSa~~y~~~~~n~~a~~~i~~~~~~~~~~~~~ 269 (271)
T smart00156 227 EFFHDRKLVTIFSAPNYCGRFGNKAAVLKVDKDLKLSFEQFKP 269 (271)
T ss_pred EEecCCcEEEEECCcccccCCCceEEEEEECCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999988865
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=1.9e-62 Score=546.34 Aligned_cols=299 Identities=33% Similarity=0.578 Sum_probs=258.4
Q ss_pred CChhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeec----CCeEEEecCCCCHHHHHHHHHH
Q 001895 644 INSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLK----APIKIFGDLHGQFGDLMRLFDE 719 (999)
Q Consensus 644 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~----~~i~vvGDiHG~~~~L~~il~~ 719 (999)
+.+.++.||+.+.....--++......|+.++|.+||++|+++|++||+++++. .|++||||||||+.+|+++|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~ 87 (377)
T cd07418 8 TNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLED 87 (377)
T ss_pred CHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHH
Confidence 345678888887543211123333456899999999999999999999999998 8999999999999999999999
Q ss_pred hCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhh
Q 001895 720 YGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWA 799 (999)
Q Consensus 720 ~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~ 799 (999)
.|+++.+. +|||||||||||++|+|||.+|++||+.||.+|++||||||.+.++..|||..||..+|+.. +..+
T Consensus 88 ~g~~~~~~-----~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~-~~~l 161 (377)
T cd07418 88 AGFPDQNR-----FYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDK-GKHV 161 (377)
T ss_pred hCCCCCCc-----eEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCch-HHHH
Confidence 99886542 69999999999999999999999999999999999999999999999999999999999864 4579
Q ss_pred hhhhhhhhcccceeEEEcCcEEEecCCc---------------------------cCcccCHHHhhhccCCc-ccCCCC-
Q 001895 800 WHRINRLFNWLPLAALIEKKIICMHGGI---------------------------GRSINHVEQIENLQRPI-TMEAGS- 850 (999)
Q Consensus 800 ~~~~~~~f~~LPlaa~i~~~il~vHgGi---------------------------~~~~~~~~~i~~i~rp~-~~~~~~- 850 (999)
|+.++++|++||++++|++++||||||| ++.+.++++|+.++||. +++..+
T Consensus 162 ~~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~ 241 (377)
T cd07418 162 YRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGS 241 (377)
T ss_pred HHHHHHHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCc
Confidence 9999999999999999999999999999 34567999999999985 444332
Q ss_pred -ceeeecccCCCCCCCCCCCCccC-CCCCCceeeCHHHHHHHHHHcCCcEEEEeccc------------cccceEEecC-
Q 001895 851 -IVLMDLLWSDPTENDSVEGLRPN-ARGPGLVTFGPDRVMEFCNNNDLQLIVRAHEC------------VMDGFERFAQ- 915 (999)
Q Consensus 851 -~~~~dllWsDP~~~~~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~------------~~~G~~~~~~- 915 (999)
.+++|||||||.. ..+|.+| .||.| +.||++++++||++||+++||||||| |++||+++++
T Consensus 242 ~~i~~dlLWSDP~~---~~g~~~~~~RG~g-~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~ 317 (377)
T cd07418 242 NLIPGDVLWSDPSL---TPGLSPNKQRGIG-LLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDV 317 (377)
T ss_pred cccceeeEeeCCcc---CCCCCccCCCCCc-cccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccC
Confidence 2578999999986 3578777 79999 68999999999999999999999996 7899999887
Q ss_pred --CeEEEEecccccC------CCCCCeEEEEEEcCCc--eEEeEEec
Q 001895 916 --GHLITLFSATNYC------GTANNAGAILVLGRDL--VVVPKLIH 952 (999)
Q Consensus 916 --~~~iTvFSa~~y~------~~~~n~ga~l~~~~~~--~~~~~~~~ 952 (999)
++|||||||+||| +..+|+||+++++.+- ...++.|.
T Consensus 318 ~~~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~ 364 (377)
T cd07418 318 ESGKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFE 364 (377)
T ss_pred CCCcEEEEecCCccccccccccccCcceEEEEEecCCCCCccceEee
Confidence 9999999999999 5789999999997643 44555554
No 15
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=1.3e-62 Score=515.88 Aligned_cols=274 Identities=37% Similarity=0.652 Sum_probs=250.6
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHH
Q 001895 670 FLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLE 749 (999)
Q Consensus 670 ~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~e 749 (999)
.|+++..+.|+.++..+|++|++++++++||.|||||||||.||+++|+..|.|... +|||||||||||.+|+|
T Consensus 60 rl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t------~YLFLGDYVDRGyFSiE 133 (517)
T KOG0375|consen 60 RLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANT------RYLFLGDYVDRGYFSIE 133 (517)
T ss_pred chhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccc------eeEeeccccccceeeee
Confidence 478999999999999999999999999999999999999999999999998887765 99999999999999999
Q ss_pred HHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhhcccceeEEEcCcEEEecCCccC
Q 001895 750 TITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGR 829 (999)
Q Consensus 750 vl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~ 829 (999)
|+.+|.+||+.||..++|||||||++.+...|.|+.||..||.+ .+|+++++.|+.|||||+.++.+|||||||+|
T Consensus 134 CvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse----~vYdaCmesFd~LPLAAlmNqQflCVHGGlSP 209 (517)
T KOG0375|consen 134 CVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE----RVYDACMESFDCLPLAALMNQQFLCVHGGLSP 209 (517)
T ss_pred hHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccH----HHHHHHHHHhccchHHHHhcCceEEecCCCCc
Confidence 99999999999999999999999999999999999999999965 69999999999999999999999999999999
Q ss_pred cccCHHHhhhccCCcccCCCCceeeecccCCCCCCCC----CCCCccC-CCCCCceeeCHHHHHHHHHHcCCcEEEEecc
Q 001895 830 SINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDS----VEGLRPN-ARGPGLVTFGPDRVMEFCNNNDLQLIVRAHE 904 (999)
Q Consensus 830 ~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~----~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~ 904 (999)
.+.+++||+++.|..++|..+ .+||||||||.++.. .+.|.+| .||++ |.|.-.++.+||+.|||--|||+||
T Consensus 210 Ei~tl~DIr~l~RF~EpPa~G-pmCDLLWsDPlEdfgnek~~e~f~hNsvRGCS-yfysy~A~C~FLq~nnLLSIiRAHE 287 (517)
T KOG0375|consen 210 EIHTLDDIRKLDRFKEPPAFG-PMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCS-YFYSYPAVCEFLQNNNLLSIIRAHE 287 (517)
T ss_pred ccccHHHHHhhhhccCCCccC-cchhhhccChhhhccccccccccccCcccccc-ceechHHHHHHHHhCCchhhhhhhh
Confidence 999999999999999999877 899999999987421 2456666 79999 7899999999999999999999999
Q ss_pred ccccceEEecCC------eEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCCC
Q 001895 905 CVMDGFERFAQG------HLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPP 956 (999)
Q Consensus 905 ~~~~G~~~~~~~------~~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~ 956 (999)
.++.||.++-+. .||||||||||.+.++|+||||..+++. +...+|.-.|.
T Consensus 288 AQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnNV-MNIRQFncSPH 344 (517)
T KOG0375|consen 288 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPH 344 (517)
T ss_pred hhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhccc-ceeeccCCCCC
Confidence 999999987665 5899999999999999999999987763 33445544333
No 16
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-62 Score=495.73 Aligned_cols=286 Identities=40% Similarity=0.706 Sum_probs=268.1
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 001895 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (999)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 727 (999)
++.-|..|.+.+ .+++.++..||+.|+++|.+|.+|..++.|++||||+||||+||+++|+..|..+..
T Consensus 20 vd~~ie~L~~ck----------~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdt- 88 (319)
T KOG0371|consen 20 VDPWIEQLYKCK----------PLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDT- 88 (319)
T ss_pred cccchHHHHhcC----------CCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCc-
Confidence 455666665543 578899999999999999999999999999999999999999999999887776654
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhh
Q 001895 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (999)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (999)
+|+|+|||||||++|.|++.+|.++|++||++|.+||||||.+.|...|||++||.+|||.. .+|+.|.+.|
T Consensus 89 -----nylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~a---nvw~~Ftdlf 160 (319)
T KOG0371|consen 89 -----NYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNA---NVWKYFTDLF 160 (319)
T ss_pred -----ceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccc---cchHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999975 7999999999
Q ss_pred cccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHH
Q 001895 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (999)
Q Consensus 808 ~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (999)
+++|+.|+|+++|||+|||++|++.+++.++.+.|-.+++.++ .++|||||||++ .-||..++||+| +.||.+..
T Consensus 161 dy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg-pmcDlLwsdpdd---r~gwg~sprgag-~tfg~di~ 235 (319)
T KOG0371|consen 161 DYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG-PMCDLLWSDPDD---RCGWGISPRGAG-YTFGQDIS 235 (319)
T ss_pred hccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC-ChhheeccCccc---CCCCCCCCCCCC-cccchhhH
Confidence 9999999999999999999999999999999999988888876 688999999985 579999999999 79999999
Q ss_pred HHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCCCC
Q 001895 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 957 (999)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 957 (999)
++|-.+||+++|-|+||.+++||.+.+...++|||||+|||+.++|.+|++.+++.....+..|.|.+-.
T Consensus 236 ~~fn~~n~lslisRahqlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~d~~~~~~f~q~~psp~k 305 (319)
T KOG0371|consen 236 EQFNHKNGLSLISRAHQLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMERDDTKNYDFLQFDPSPRK 305 (319)
T ss_pred HHhhccCCchHhHHHHHHHhcccceeeecceeEEccCCchhhccccHHHHhhhhhccCcceEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986543
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-53 Score=453.30 Aligned_cols=277 Identities=33% Similarity=0.653 Sum_probs=246.2
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeec----CCeEEEecCCCCHHHHHHHHHHhCCC
Q 001895 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLK----APIKIFGDLHGQFGDLMRLFDEYGSP 723 (999)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~----~~i~vvGDiHG~~~~L~~il~~~g~~ 723 (999)
++.+|+.+-.. ..|....+..|+.+|+++|++-|++-+++ ..|.||||+||.++||+-||-+.|+|
T Consensus 121 i~~lieaFk~k----------q~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlP 190 (631)
T KOG0377|consen 121 IDLLIEAFKKK----------QRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLP 190 (631)
T ss_pred HHHHHHHHHHh----------hhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCC
Confidence 56677765321 25778889999999999999999999985 46999999999999999999999999
Q ss_pred CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhh
Q 001895 724 STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRI 803 (999)
Q Consensus 724 ~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~ 803 (999)
+..+ -|||.||+||||.+|+|||++|++|.+.||..|||-|||||+..+|..|||..|+..||... +..+...+
T Consensus 191 S~~n-----pYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~-~k~Ilr~l 264 (631)
T KOG0377|consen 191 SSSN-----PYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRH-GKRILRFL 264 (631)
T ss_pred CCCC-----CeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhc-ccHHHHHH
Confidence 9875 79999999999999999999999999999999999999999999999999999999999765 77888999
Q ss_pred hhhhcccceeEEEcCcEEEecCCccCcccCHHHhhhccC---------Cccc--CC----------CCceeeecccCCCC
Q 001895 804 NRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQR---------PITM--EA----------GSIVLMDLLWSDPT 862 (999)
Q Consensus 804 ~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~r---------p~~~--~~----------~~~~~~dllWsDP~ 862 (999)
.++|.|||++.+|+.+||+|||||+.. ++++-|.+|+| |.+. +. ++..+.|+|||||.
T Consensus 265 eevy~WLPi~tiid~~ilvvHGGiSd~-Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~ 343 (631)
T KOG0377|consen 265 EEVYRWLPIGTIIDSRILVVHGGISDS-TDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQ 343 (631)
T ss_pred HHHHHhcchhhhcccceEEEecCcccc-hhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcc
Confidence 999999999999999999999999875 67777777766 2211 00 23457899999998
Q ss_pred CCCCCCCCccC-CCCCCceeeCHHHHHHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEc
Q 001895 863 ENDSVEGLRPN-ARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLG 941 (999)
Q Consensus 863 ~~~~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~ 941 (999)
.+ .|..|| .||.| ++||+|++.+||++++|+++||+|||.++|||+.++++|+|||||+||.....|+||++.+.
T Consensus 344 ~~---~GC~pNt~RGgG-~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAYikl~ 419 (631)
T KOG0377|consen 344 AT---MGCVPNTLRGGG-CYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAYIKLG 419 (631)
T ss_pred cc---cCCCcccccCCc-ceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceEEEeC
Confidence 63 677788 79999 57999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCce
Q 001895 942 RDLV 945 (999)
Q Consensus 942 ~~~~ 945 (999)
+.++
T Consensus 420 ~~~~ 423 (631)
T KOG0377|consen 420 NQLT 423 (631)
T ss_pred CCCC
Confidence 8764
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=2.1e-46 Score=415.68 Aligned_cols=274 Identities=39% Similarity=0.675 Sum_probs=251.0
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCeeeecCC----eEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCC
Q 001895 671 LDCNEIADLCDSAERIFSSEPSVLQLKAP----IKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH 746 (999)
Q Consensus 671 l~~~~i~~l~~~~~~~~~~e~~~l~~~~~----i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~ 746 (999)
|...-...|+..+..+++++|+++++..| +.|+||+||||.||+++|+..|.|+... .|+|.||+||||..
T Consensus 183 L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~-----~ylfngdfv~rgs~ 257 (476)
T KOG0376|consen 183 LPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN-----PYLFNGDFVDRGSW 257 (476)
T ss_pred cccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc-----cccccCceeeeccc
Confidence 45556778999999999999999998754 8999999999999999999999998764 89999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhhcccceeEEEcCcEEEecCC
Q 001895 747 SLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGG 826 (999)
Q Consensus 747 s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgG 826 (999)
|.|++..+++.|+.+|+++|++|||||...++..|||..|+..+|.+ ..+..+.++|.+||++-+|+++++.+|||
T Consensus 258 s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte----~~~~~f~~~f~~LPl~~~i~~~~~~~hgg 333 (476)
T KOG0376|consen 258 SVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTE----EMFNLFSEVFIWLPLAHLINNKVLVMHGG 333 (476)
T ss_pred ceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHH----HHHHhhhhhhccccchhhhcCceEEEecC
Confidence 99999999999999999999999999999999999999999999965 46777779999999999999999999999
Q ss_pred ccC-cccCHHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHHHHHHHHcCCcEEEEeccc
Q 001895 827 IGR-SINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHEC 905 (999)
Q Consensus 827 i~~-~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~ 905 (999)
+.. .-.++++|++|.|+...+.. ..++|+|||||.. ..|..++.||.| ..||+++.++||+.|++++|||+||+
T Consensus 334 lf~~~~v~l~d~r~i~r~~~~~~~-~~~~~~lws~pq~---~~g~s~S~r~~g-~~fG~d~t~~f~~~n~l~~i~rshe~ 408 (476)
T KOG0376|consen 334 LFSPDGVTLEDFRNIDRFEQPPEE-GLMCELLWSDPQP---ANGRSPSKRGVG-LQFGPDVTERFLQDNNLDKIIRSHEV 408 (476)
T ss_pred cCCCCCccHHHHHhhhhccCCccc-ccccccccCCCcc---ccCCCccccCce-eeeCCCchhhHHhhcchHHHhhcccc
Confidence 954 45689999999999555544 4899999999986 478999999999 58999999999999999999999999
Q ss_pred cccceEEecCCeEEEEecccccCCCCCCeEEEEEEc-CCceEEeEEeccCCCCC
Q 001895 906 VMDGFERFAQGHLITLFSATNYCGTANNAGAILVLG-RDLVVVPKLIHPLPPAI 958 (999)
Q Consensus 906 ~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~-~~~~~~~~~~~~~~~~~ 958 (999)
.+.||++-++|+|+|||||||||...+|.||++.++ ++++..+..|.++|..-
T Consensus 409 ~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~~ 462 (476)
T KOG0376|consen 409 KDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHPD 462 (476)
T ss_pred CCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCCC
Confidence 999999999999999999999999999999999998 78888888888877654
No 19
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.4e-36 Score=345.64 Aligned_cols=307 Identities=24% Similarity=0.276 Sum_probs=232.3
Q ss_pred eeeeecccCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEEC
Q 001895 78 VNAVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDV 157 (999)
Q Consensus 78 ~~~~~~~~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~ 157 (999)
|..+....+..|.||.+|+++.+ +++||||||...... ...+++|+||+
T Consensus 9 W~~~~~~~~~~P~pR~~h~~~~~------------~~~iyv~GG~~~~~~-------------------~~~~~~~~yd~ 57 (341)
T PLN02153 9 WIKVEQKGGKGPGPRCSHGIAVV------------GDKLYSFGGELKPNE-------------------HIDKDLYVFDF 57 (341)
T ss_pred EEEecCCCCCCCCCCCcceEEEE------------CCEEEEECCccCCCC-------------------ceeCcEEEEEC
Confidence 44444445668999999999998 789999999854221 15689999999
Q ss_pred CCCcEEEecCCCCCCCC-CcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeec--CCCCCCCcccEEE
Q 001895 158 LTNKWSRITPFGEPPTP-RAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ--GPGPGPRYGHVMA 234 (999)
Q Consensus 158 ~t~~W~~l~~~g~~P~p-R~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~--g~~P~~R~~h~~~ 234 (999)
.+++|+++.+++..|.. +.+|++++++++||+|||.... ...+++++||+.++ +|+.++.. ...|.+|..|+++
T Consensus 58 ~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~ 134 (341)
T PLN02153 58 NTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMA 134 (341)
T ss_pred CCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC-CccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEE
Confidence 99999999887644443 4589999999999999998644 34689999999986 59998732 1238899999999
Q ss_pred EECCcEEEEEccCCCC------CCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCC-----
Q 001895 235 LVGQRYLMAIGGNDGK------RPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDAS----- 303 (999)
Q Consensus 235 v~~~~~Lyv~GG~~g~------~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~----- 303 (999)
++++ +||||||.+.. ..++++++||+.++ +|+.++.+...|.+|..|.+ ++.+++||++||.+..
T Consensus 135 ~~~~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~gG 210 (341)
T PLN02153 135 SDEN-HVYVFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEKRGGAGF-AVVQGKIWVVYGFATSILPGG 210 (341)
T ss_pred EECC-EEEEECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCCCCcceE-EEECCeEEEEeccccccccCC
Confidence 9988 89999998643 24689999999999 99999887765555666654 4568999999997531
Q ss_pred --CCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCC-----CCcccCCeEEEEECCCCeEE
Q 001895 304 --SVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGG-----RMVEDSSSVAVLDTAAGVWC 376 (999)
Q Consensus 304 --~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~-----~~~~~~~~v~vyD~~t~~W~ 376 (999)
...+++++.|++.++ +|+.....+..|.+|..|++++++++||||||..... ......+++|+||+++++|+
T Consensus 211 ~~~~~~~~v~~yd~~~~-~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 211 KSDYESNAVQFFDPASG-KWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred ccceecCceEEEEcCCC-cEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 123678999999877 4444433345688999999999999999999974211 01123679999999999999
Q ss_pred EcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEE-C-CEEEEEcCCCCC-cCcCcEEEeecc
Q 001895 377 DTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAV-G-DLIFIYGGLRGG-VLLDDLLVAEDL 439 (999)
Q Consensus 377 ~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~-~-~~LyV~GG~~~~-~~l~Dv~~ld~~ 439 (999)
.+...... .+|.+|+.++++.+ + ++||||||+.++ ..++|+|.++..
T Consensus 290 ~~~~~~~~----------------~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 290 KLGECGEP----------------AMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred eccCCCCC----------------CCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 98754221 12445655555544 3 489999998764 789999998753
No 20
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.3e-36 Score=357.06 Aligned_cols=303 Identities=21% Similarity=0.311 Sum_probs=240.2
Q ss_pred eecccCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCC
Q 001895 81 VIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTN 160 (999)
Q Consensus 81 ~~~~~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~ 160 (999)
.+...+..|.||.+|+++.+ +++||||||....... ..+++|+||+.++
T Consensus 155 ~~~~~~~~P~pR~~h~~~~~------------~~~iyv~GG~~~~~~~-------------------~~~~v~~yD~~~~ 203 (470)
T PLN02193 155 KVEQKGEGPGLRCSHGIAQV------------GNKIYSFGGEFTPNQP-------------------IDKHLYVFDLETR 203 (470)
T ss_pred EcccCCCCCCCccccEEEEE------------CCEEEEECCcCCCCCC-------------------eeCcEEEEECCCC
Confidence 33455668999999999998 7899999997542211 5578999999999
Q ss_pred cEEEecCCCCCCC-CCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCc
Q 001895 161 KWSRITPFGEPPT-PRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQR 239 (999)
Q Consensus 161 ~W~~l~~~g~~P~-pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~ 239 (999)
+|..++.++..|. +|.+|++++++++||||||.... ..++++|+||+.++ +|+++.+.+..|.+|+.|+++++++
T Consensus 204 ~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~~~- 279 (470)
T PLN02193 204 TWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAADEE- 279 (470)
T ss_pred EEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEECC-
Confidence 9999888766565 46799999999999999998643 45789999999986 5999986555699999999999987
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCC
Q 001895 240 YLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDG 319 (999)
Q Consensus 240 ~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~ 319 (999)
+||||||.++...++++++||+.++ +|+.++.....|.+|..|.++ +.+++||++||.++. .+++++.|++.++
T Consensus 280 ~iYv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~~-~~~gkiyviGG~~g~--~~~dv~~yD~~t~- 353 (470)
T PLN02193 280 NVYVFGGVSATARLKTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGLE-VVQGKVWVVYGFNGC--EVDDVHYYDPVQD- 353 (470)
T ss_pred EEEEECCCCCCCCcceEEEEECCCC--EEEeCCCCCCCCCCCCCcEEE-EECCcEEEEECCCCC--ccCceEEEECCCC-
Confidence 8999999988888999999999999 999998766556666666554 558999999998654 4789999999877
Q ss_pred eEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCC-----CcccCCeEEEEECCCCeEEEcccCcCCCCCCCccccc
Q 001895 320 RWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGR-----MVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADA 394 (999)
Q Consensus 320 ~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~-----~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~ 394 (999)
+|+.....+..|.+|..|++++++++|||+||...... .....+++|+||+.+++|+.+..+...
T Consensus 354 ~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~---------- 423 (470)
T PLN02193 354 KWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEE---------- 423 (470)
T ss_pred EEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCC----------
Confidence 55544444556889999999999999999999864210 012367899999999999999876321
Q ss_pred CCCCCccCCCCcceeEEE--EE-C-CEEEEEcCCCC-CcCcCcEEEeecc
Q 001895 395 AGGDAAVELTRRCRHAAA--AV-G-DLIFIYGGLRG-GVLLDDLLVAEDL 439 (999)
Q Consensus 395 ~~~~~~~~p~~R~~hsa~--~~-~-~~LyV~GG~~~-~~~l~Dv~~ld~~ 439 (999)
...|.+|.+|+++ .+ + +.|+||||++. +.+++|+|.++..
T Consensus 424 -----~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~ 468 (470)
T PLN02193 424 -----EETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGID 468 (470)
T ss_pred -----CCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecC
Confidence 1236788877543 23 3 46999999874 5889999999754
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=310.76 Aligned_cols=301 Identities=25% Similarity=0.401 Sum_probs=248.4
Q ss_pred CCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEecCC
Q 001895 89 PGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPF 168 (999)
Q Consensus 89 P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l~~~ 168 (999)
-+.|.+|+++.+ +.+||-|||.-..+..... ---|+++++..+.+|+++++.
T Consensus 11 GPrRVNHAavaV------------G~riYSFGGYCsGedy~~~----------------~piDVH~lNa~~~RWtk~pp~ 62 (392)
T KOG4693|consen 11 GPRRVNHAAVAV------------GSRIYSFGGYCSGEDYDAK----------------DPIDVHVLNAENYRWTKMPPG 62 (392)
T ss_pred Ccccccceeeee------------cceEEecCCcccccccccC----------------CcceeEEeeccceeEEecCcc
Confidence 357899999999 7999999997655432110 233899999999999999872
Q ss_pred ----------CCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECC
Q 001895 169 ----------GEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQ 238 (999)
Q Consensus 169 ----------g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~ 238 (999)
...|.-|++|+++.+.+++||+||.++....-+-+|.||++++ +|.++.+.|-.|.+|.+|++|++++
T Consensus 63 ~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~--~W~~p~v~G~vPgaRDGHsAcV~gn 140 (392)
T KOG4693|consen 63 ITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETN--VWKKPEVEGFVPGARDGHSACVWGN 140 (392)
T ss_pred cccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccc--cccccceeeecCCccCCceeeEECc
Confidence 1246779999999999999999999987778899999999996 6999999999999999999999998
Q ss_pred cEEEEEccCC--CCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCC--------Ccc
Q 001895 239 RYLMAIGGND--GKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSV--------PLA 308 (999)
Q Consensus 239 ~~Lyv~GG~~--g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~--------~~~ 308 (999)
.+|||||+. .+.+.+|+++||+.+. +|+.+...+.+|.-|.+|+++++ ++++|||||+..... ..+
T Consensus 141 -~MyiFGGye~~a~~FS~d~h~ld~~Tm--tWr~~~Tkg~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~ 216 (392)
T KOG4693|consen 141 -QMYIFGGYEEDAQRFSQDTHVLDFATM--TWREMHTKGDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCD 216 (392)
T ss_pred -EEEEecChHHHHHhhhccceeEeccce--eeeehhccCCCchhhhhhhhhhc-cceEEEeccccccCCCccchhhhhcc
Confidence 899999994 4667899999999998 99999999998887888877776 699999999854332 233
Q ss_pred cEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccCcCCCCCC
Q 001895 309 SAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTG 388 (999)
Q Consensus 309 d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~ 388 (999)
.+..++.. ++.|......++.|.+|.+|++.+++++||+|||+++.-. ...+++|+|||.|..|..+..-+.
T Consensus 217 ~i~~ld~~-T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln--~HfndLy~FdP~t~~W~~I~~~Gk----- 288 (392)
T KOG4693|consen 217 TIMALDLA-TGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN--VHFNDLYCFDPKTSMWSVISVRGK----- 288 (392)
T ss_pred eeEEEecc-ccccccCCCCCcCCCcccccceEEEcceEEEecccchhhh--hhhcceeecccccchheeeeccCC-----
Confidence 44445555 4466666566788999999999999999999999987654 458999999999999999987643
Q ss_pred CcccccCCCCCccCCCCcceeEEEEECCEEEEEcCCCC------------C-------cCcCcEEEeeccccccc
Q 001895 389 RYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRG------------G-------VLLDDLLVAEDLAAAET 444 (999)
Q Consensus 389 ~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~~------------~-------~~l~Dv~~ld~~~~~~~ 444 (999)
.|.+|.++++++.+++||+|||... + ..++|+.+||..+..++
T Consensus 289 -------------~P~aRRRqC~~v~g~kv~LFGGTsP~~~~~~Spt~~~G~~~~~~LiD~SDLHvLDF~PsLKT 350 (392)
T KOG4693|consen 289 -------------YPSARRRQCSVVSGGKVYLFGGTSPLPCHPLSPTNYNGMISPSGLIDLSDLHVLDFAPSLKT 350 (392)
T ss_pred -------------CCCcccceeEEEECCEEEEecCCCCCCCCCCCccccCCCCCcccccccccceeeecChhHHH
Confidence 2579999999999999999999543 0 34688899988765544
No 22
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=337.64 Aligned_cols=263 Identities=24% Similarity=0.396 Sum_probs=240.7
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeCCEEEEEcc
Q 001895 113 GPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGG 192 (999)
Q Consensus 113 ~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG 192 (999)
.+.||++||...... ..+.+.+||+.++.|..+..+ |.+|..+++++++++||+.||
T Consensus 284 ~~~l~~vGG~~~~~~--------------------~~~~ve~yd~~~~~w~~~a~m---~~~r~~~~~~~~~~~lYv~GG 340 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQ--------------------SLRSVECYDPKTNEWSSLAPM---PSPRCRVGVAVLNGKLYVVGG 340 (571)
T ss_pred CCeEEEECCCCCCCc--------------------ccceeEEecCCcCcEeecCCC---CcccccccEEEECCEEEEEcc
Confidence 578999999986221 788999999999999999998 799999999999999999999
Q ss_pred cCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcc
Q 001895 193 IGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (999)
Q Consensus 193 ~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~ 272 (999)
++.+....+++++||+.+++ |+.++ +|+.+|.+|+++++++ .||++||.+|...++.+++||+.++ +|+.++
T Consensus 341 ~~~~~~~l~~ve~YD~~~~~--W~~~a---~M~~~R~~~~v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~--~W~~va 412 (571)
T KOG4441|consen 341 YDSGSDRLSSVERYDPRTNQ--WTPVA---PMNTKRSDFGVAVLDG-KLYAVGGFDGEKSLNSVECYDPVTN--KWTPVA 412 (571)
T ss_pred ccCCCcccceEEEecCCCCc--eeccC---CccCccccceeEEECC-EEEEEeccccccccccEEEecCCCC--cccccC
Confidence 97556677999999999975 99998 9999999999999998 9999999999999999999999999 999999
Q ss_pred cCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCc
Q 001895 273 PEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGA 352 (999)
Q Consensus 273 ~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~ 352 (999)
++.. +++.++++..+++||++||.++....++.+..||+.++ +|...++| +.+|.++++++++++||++||+
T Consensus 413 ~m~~----~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M-~~~R~~~g~a~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 413 PMLT----RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPM-NTRRSGFGVAVLNGKIYVVGGF 484 (571)
T ss_pred CCCc----ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC---ceeecCCc-ccccccceEEEECCEEEEECCc
Confidence 9877 68888888999999999999988878999999999999 99999988 6999999999999999999999
Q ss_pred CCCCCCcccCCeEEEEECCCCeEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECCEEEEEcCCCCCcCcCc
Q 001895 353 LGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDD 432 (999)
Q Consensus 353 ~~~~~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~~~~~l~D 432 (999)
++... ...+++|||.+++|+.+..+ +.+|..+++++++++||++||+++..+++.
T Consensus 485 ~~~~~----~~~VE~ydp~~~~W~~v~~m---------------------~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ 539 (571)
T KOG4441|consen 485 DGTSA----LSSVERYDPETNQWTMVAPM---------------------TSPRSAVGVVVLGGKLYAVGGFDGNNNLNT 539 (571)
T ss_pred cCCCc----cceEEEEcCCCCceeEcccC---------------------ccccccccEEEECCEEEEEecccCccccce
Confidence 88332 67799999999999999877 569999999999999999999999999999
Q ss_pred EEEeecc
Q 001895 433 LLVAEDL 439 (999)
Q Consensus 433 v~~ld~~ 439 (999)
+..+|-.
T Consensus 540 ve~ydp~ 546 (571)
T KOG4441|consen 540 VECYDPE 546 (571)
T ss_pred eEEcCCC
Confidence 9999643
No 23
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.1e-32 Score=323.29 Aligned_cols=275 Identities=25% Similarity=0.386 Sum_probs=223.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCe--EEEEECCC----CcEEEecCCCCCCCCCcCcEEEEeCCE
Q 001895 113 GPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATAD--VHCYDVLT----NKWSRITPFGEPPTPRAAHVATAVGTM 186 (999)
Q Consensus 113 ~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d--v~~yD~~t----~~W~~l~~~g~~P~pR~~hsa~~~g~~ 186 (999)
+++|+.|+|.... .++. +|.+++.+ ++|.++.+.+..|.||.+|++++++++
T Consensus 120 ~~~ivgf~G~~~~----------------------~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~ 177 (470)
T PLN02193 120 GGKIVGFHGRSTD----------------------VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNK 177 (470)
T ss_pred CCeEEEEeccCCC----------------------cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCE
Confidence 6899999997543 3333 35557655 799999988778999999999999999
Q ss_pred EEEEcccCCC-CCCcCcEEEEecCCCCCceEEEeecCCCCC-CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 001895 187 VVIQGGIGPA-GLSAEDLHVLDLTQQRPRWHRVVVQGPGPG-PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 187 iyv~GG~~~~-~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~-~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~ 264 (999)
||||||.... ....+++|+||+.++ +|+.++..+..|. .|.+|+++++++ +||||||.++...++++|+||+.++
T Consensus 178 iyv~GG~~~~~~~~~~~v~~yD~~~~--~W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 178 IYSFGGEFTPNQPIDKHLYVFDLETR--TWSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred EEEECCcCCCCCCeeCcEEEEECCCC--EEEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCCCCCccEEEEECCCC
Confidence 9999997533 334578999999986 5999887766776 467999999998 8999999988788999999999999
Q ss_pred CceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECC
Q 001895 265 PYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNA 344 (999)
Q Consensus 265 ~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~ 344 (999)
+|+++.++...|.+|..|.++ ..+++||||||.+... .+++++.|++.++ +|+....++..|.+|..|+++++++
T Consensus 255 --~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~-~W~~~~~~~~~~~~R~~~~~~~~~g 329 (470)
T PLN02193 255 --EWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATA-RLKTLDSYNIVDK-KWFHCSTPGDSFSIRGGAGLEVVQG 329 (470)
T ss_pred --EEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCC-CcceEEEEECCCC-EEEeCCCCCCCCCCCCCcEEEEECC
Confidence 999998887667777776654 4689999999997654 5788999999877 4443333334578899999999999
Q ss_pred EEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECCEEEEEcCC
Q 001895 345 RLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGL 424 (999)
Q Consensus 345 ~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~ 424 (999)
+|||+||.++.. .+++++||+.+++|+.+..++. .|.+|..|++++++++||||||.
T Consensus 330 kiyviGG~~g~~-----~~dv~~yD~~t~~W~~~~~~g~------------------~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 330 KVWVVYGFNGCE-----VDDVHYYDPVQDKWTQVETFGV------------------RPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred cEEEEECCCCCc-----cCceEEEECCCCEEEEeccCCC------------------CCCCcceeEEEEECCEEEEECCc
Confidence 999999986432 6889999999999999876522 25789999999999999999997
Q ss_pred CC---------CcCcCcEEEeeccc
Q 001895 425 RG---------GVLLDDLLVAEDLA 440 (999)
Q Consensus 425 ~~---------~~~l~Dv~~ld~~~ 440 (999)
.. +.+++|+|.||...
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred cCCccccccCccceeccEEEEEcCc
Confidence 53 24678999999754
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.6e-33 Score=307.83 Aligned_cols=313 Identities=27% Similarity=0.421 Sum_probs=261.9
Q ss_pred ceeeeeecccCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEE
Q 001895 76 SVVNAVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCY 155 (999)
Q Consensus 76 ~~~~~~~~~~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~y 155 (999)
--|..+....|..|.||.||-++++ ...|++|||-+. |+.++++.|
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVai------------kELiviFGGGNE----------------------GiiDELHvY 62 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAI------------KELIVIFGGGNE----------------------GIIDELHVY 62 (830)
T ss_pred cceEEEecccCCCCCccccchheee------------eeeEEEecCCcc----------------------cchhhhhhh
Confidence 3466677788999999999999999 678999999653 288999999
Q ss_pred ECCCCcEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEee----cCCCCCCCccc
Q 001895 156 DVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVV----QGPGPGPRYGH 231 (999)
Q Consensus 156 D~~t~~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~----~g~~P~~R~~h 231 (999)
+..+++|..-...|+.|.+-+.|..++.|++||+|||+.+.+.+++|+|.+.... |.|.++.+ .|.+|.||.+|
T Consensus 63 NTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasR--WeWkrlkp~~p~nG~pPCPRlGH 140 (830)
T KOG4152|consen 63 NTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASR--WEWKRLKPKTPKNGPPPCPRLGH 140 (830)
T ss_pred ccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCc
Confidence 9999999999999999999999999999999999999999999999998777655 67988764 57789999999
Q ss_pred EEEEECCcEEEEEccCCC---------CCCCCeEEEEECC--CCCceEEEcccCCCCCCCccceEEEEEe-----CCEEE
Q 001895 232 VMALVGQRYLMAIGGNDG---------KRPLADVWALDTA--AKPYEWRKLEPEGEGPPPCMYATASARS-----DGLLL 295 (999)
Q Consensus 232 ~~~v~~~~~Lyv~GG~~g---------~~~~ndv~~yDl~--s~~~~W~~v~~~~~~P~~r~~~~a~~~~-----~~~Ly 295 (999)
+..++++ +.|+|||... -.++||+|.+++. +.-.-|......+..|++|-.|+++++. ..+||
T Consensus 141 SFsl~gn-KcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmv 219 (830)
T KOG4152|consen 141 SFSLVGN-KCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMV 219 (830)
T ss_pred eeEEecc-EeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEE
Confidence 9999997 9999999732 2369999999997 3345799999999999999999999883 24899
Q ss_pred EEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCC----------CCCCcccCCeE
Q 001895 296 LCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALG----------GGRMVEDSSSV 365 (999)
Q Consensus 296 vfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~----------~~~~~~~~~~v 365 (999)
||||+.+. .+.|+|.+|..+- +|......|..|.||..|+++.++++||||||+-. ...-..+.+++
T Consensus 220 vyGGM~G~--RLgDLW~Ldl~Tl-~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl 296 (830)
T KOG4152|consen 220 VYGGMSGC--RLGDLWTLDLDTL-TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSL 296 (830)
T ss_pred EEcccccc--cccceeEEeccee-ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccce
Confidence 99999876 5899999988755 77777777999999999999999999999999721 11113457889
Q ss_pred EEEECCCCeEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECCEEEEEcCCCC-------CcCcCcEEEeec
Q 001895 366 AVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRG-------GVLLDDLLVAED 438 (999)
Q Consensus 366 ~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~~-------~~~l~Dv~~ld~ 438 (999)
-++|+.+..|..+-.... ...-.|.+|.+|+++.++.+|||.-|.+| ..-..|+|.||.
T Consensus 297 ~clNldt~~W~tl~~d~~--------------ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 297 ACLNLDTMAWETLLMDTL--------------EDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eeeeecchheeeeeeccc--------------cccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 999999999998753311 11125889999999999999999999764 456889999997
Q ss_pred cccc
Q 001895 439 LAAA 442 (999)
Q Consensus 439 ~~~~ 442 (999)
...+
T Consensus 363 ekPp 366 (830)
T KOG4152|consen 363 EKPP 366 (830)
T ss_pred cCCC
Confidence 6544
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.9e-31 Score=301.73 Aligned_cols=276 Identities=22% Similarity=0.283 Sum_probs=213.6
Q ss_pred CCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEEC--CCCcEEE
Q 001895 87 DGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDV--LTNKWSR 164 (999)
Q Consensus 87 ~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~--~t~~W~~ 164 (999)
..|.||..++++++ +++|||+||.. .+++|+||+ .+++|..
T Consensus 3 ~lp~~~~~~~~~~~------------~~~vyv~GG~~-------------------------~~~~~~~d~~~~~~~W~~ 45 (346)
T TIGR03547 3 DLPVGFKNGTGAII------------GDKVYVGLGSA-------------------------GTSWYKLDLKKPSKGWQK 45 (346)
T ss_pred CCCccccCceEEEE------------CCEEEEEcccc-------------------------CCeeEEEECCCCCCCceE
Confidence 46889999988888 78999999962 247899996 5788999
Q ss_pred ecCCCCCC-CCCcCcEEEEeCCEEEEEcccCCCC-----CCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEE-EEC
Q 001895 165 ITPFGEPP-TPRAAHVATAVGTMVVIQGGIGPAG-----LSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMA-LVG 237 (999)
Q Consensus 165 l~~~g~~P-~pR~~hsa~~~g~~iyv~GG~~~~~-----~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~-v~~ 237 (999)
++++ | .+|..|++++++++|||+||..... ..++++|+||+.++ +|+.++ ..+|.+|.+|+++ +++
T Consensus 46 l~~~---p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~--~W~~~~--~~~p~~~~~~~~~~~~~ 118 (346)
T TIGR03547 46 IADF---PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN--SWQKLD--TRSPVGLLGASGFSLHN 118 (346)
T ss_pred CCCC---CCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC--EEecCC--CCCCCcccceeEEEEeC
Confidence 9876 5 5899999999999999999985322 24689999999986 599986 2467888888887 567
Q ss_pred CcEEEEEccCCCCC----------------------------------CCCeEEEEECCCCCceEEEcccCCCCCCCccc
Q 001895 238 QRYLMAIGGNDGKR----------------------------------PLADVWALDTAAKPYEWRKLEPEGEGPPPCMY 283 (999)
Q Consensus 238 ~~~Lyv~GG~~g~~----------------------------------~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~ 283 (999)
+ +||++||.++.. .++++++||+.++ +|+.+.+++. .++.
T Consensus 119 g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~~~~~~p~---~~r~ 192 (346)
T TIGR03547 119 G-QAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWRNLGENPF---LGTA 192 (346)
T ss_pred C-EEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--ceeECccCCC---CcCC
Confidence 6 999999986421 2478999999999 9999987642 2456
Q ss_pred eEEEEEeCCEEEEEeccCCCCCCcccEEEEec--CCCCeEEEEECCCCCCCCc-------ceeEEEEECCEEEEEcCcCC
Q 001895 284 ATASARSDGLLLLCGGRDASSVPLASAYGLAK--HRDGRWEWAIAPGVSPSPR-------YQHAAVFVNARLHVSGGALG 354 (999)
Q Consensus 284 ~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~--~~~~~W~w~~~~g~~P~~R-------~~hsav~~~~~L~V~GG~~~ 354 (999)
+++++..+++|||+||.........+++.|+. .++ +|...+.+ |.+| ..|++++++++|||+||.+.
T Consensus 193 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~---~W~~~~~m-~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~ 268 (346)
T TIGR03547 193 GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKL---EWNKLPPL-PPPKSSSQEGLAGAFAGISNGVLLVAGGANF 268 (346)
T ss_pred CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCc---eeeecCCC-CCCCCCccccccEEeeeEECCEEEEeecCCC
Confidence 66777789999999998755444455666654 333 67777765 3443 46678889999999999863
Q ss_pred CCCC-------------cccCCeEEEEECCCCeEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECCEEEEE
Q 001895 355 GGRM-------------VEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIY 421 (999)
Q Consensus 355 ~~~~-------------~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~ 421 (999)
.... ......+++||+++++|+.+..+ |.+|..+++++++++|||+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---------------------p~~~~~~~~~~~~~~iyv~ 327 (346)
T TIGR03547 269 PGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL---------------------PQGLAYGVSVSWNNGVLLI 327 (346)
T ss_pred CCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC---------------------CCCceeeEEEEcCCEEEEE
Confidence 2110 00124689999999999999887 6689999988999999999
Q ss_pred cCCCC-CcCcCcEEEee
Q 001895 422 GGLRG-GVLLDDLLVAE 437 (999)
Q Consensus 422 GG~~~-~~~l~Dv~~ld 437 (999)
||.+. +..++|++.+-
T Consensus 328 GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 328 GGENSGGKAVTDVYLLS 344 (346)
T ss_pred eccCCCCCEeeeEEEEE
Confidence 99775 47789997653
No 26
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.5e-31 Score=317.18 Aligned_cols=234 Identities=14% Similarity=0.187 Sum_probs=201.7
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCc
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~ 229 (999)
..+++||+.+++|..++++ |.+|.+|++++++++||++||........+++++||+.++ +|..++ +||.+|.
T Consensus 272 ~~v~~yd~~~~~W~~l~~m---p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n--~W~~~~---~m~~~R~ 343 (557)
T PHA02713 272 PCILVYNINTMEYSVISTI---PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENK--IHVELP---PMIKNRC 343 (557)
T ss_pred CCEEEEeCCCCeEEECCCC---CccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCC--eEeeCC---CCcchhh
Confidence 4789999999999999876 7899999999999999999997544445789999999986 499887 8999999
Q ss_pred ccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCC-----
Q 001895 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS----- 304 (999)
Q Consensus 230 ~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~----- 304 (999)
.|+++++++ +||++||.++...++++++||+.++ +|+.+++++. .+.+++++..+++||++||.++..
T Consensus 344 ~~~~~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~----~r~~~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 344 RFSLAVIDD-TIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPI----ALSSYGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred ceeEEEECC-EEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCc----ccccccEEEECCEEEEEeCCCcccccccc
Confidence 999999998 8999999988778899999999999 9999988765 244445556799999999986432
Q ss_pred ------------CCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCC
Q 001895 305 ------------VPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAA 372 (999)
Q Consensus 305 ------------~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t 372 (999)
..++.++.|++.++ +|...+++ +.+|..+++++++++|||+||.++... ..+.+++|||++
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td---~W~~v~~m-~~~r~~~~~~~~~~~IYv~GG~~~~~~---~~~~ve~Ydp~~ 489 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNN---IWETLPNF-WTGTIRPGVVSHKDDIYVVCDIKDEKN---VKTCIFRYNTNT 489 (557)
T ss_pred cccccccccccccccceEEEECCCCC---eEeecCCC-CcccccCcEEEECCEEEEEeCCCCCCc---cceeEEEecCCC
Confidence 12578999999999 78888776 689999999999999999999875332 135689999999
Q ss_pred -CeEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECCEEEEEcCCCC
Q 001895 373 -GVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRG 426 (999)
Q Consensus 373 -~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~~ 426 (999)
++|+.++.+ |.+|..+++++++++||++||+++
T Consensus 490 ~~~W~~~~~m---------------------~~~r~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 490 YNGWELITTT---------------------ESRLSALHTILHDNTIMMLHCYES 523 (557)
T ss_pred CCCeeEcccc---------------------CcccccceeEEECCEEEEEeeecc
Confidence 899999988 679999999999999999999886
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.98 E-value=1e-31 Score=274.48 Aligned_cols=228 Identities=24% Similarity=0.374 Sum_probs=205.2
Q ss_pred CCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEec
Q 001895 87 DGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRIT 166 (999)
Q Consensus 87 ~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l~ 166 (999)
..|..|+||+.+.+ .+++||+||.++.++ .-|.+|+||++++.|.+..
T Consensus 74 ~VPyqRYGHtvV~y------------~d~~yvWGGRND~eg--------------------aCN~Ly~fDp~t~~W~~p~ 121 (392)
T KOG4693|consen 74 AVPYQRYGHTVVEY------------QDKAYVWGGRNDDEG--------------------ACNLLYEFDPETNVWKKPE 121 (392)
T ss_pred ccchhhcCceEEEE------------cceEEEEcCccCccc--------------------ccceeeeeccccccccccc
Confidence 56889999999999 799999999998775 7889999999999999999
Q ss_pred CCCCCCCCCcCcEEEEeCCEEEEEcccCCC-CCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEc
Q 001895 167 PFGEPPTPRAAHVATAVGTMVVIQGGIGPA-GLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIG 245 (999)
Q Consensus 167 ~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~-~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~G 245 (999)
..|..|.+|.+|++|++++.+|||||+..+ ...++|+++||+.+.+ |+.+.+.|..|.=|..|+++++++ .+||||
T Consensus 122 v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~Tmt--Wr~~~Tkg~PprwRDFH~a~~~~~-~MYiFG 198 (392)
T KOG4693|consen 122 VEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMT--WREMHTKGDPPRWRDFHTASVIDG-MMYIFG 198 (392)
T ss_pred eeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEecccee--eeehhccCCCchhhhhhhhhhccc-eEEEec
Confidence 999999999999999999999999998643 4567899999999975 999999999999999999999997 899999
Q ss_pred cCCC---------CCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCC-CCcccEEEEec
Q 001895 246 GNDG---------KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS-VPLASAYGLAK 315 (999)
Q Consensus 246 G~~g---------~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~-~~~~d~~~~~~ 315 (999)
|... ..+.+.+-.||+.+. .|......+..|..|+.|++.++ +++||+|||.++.- ..++|+|.|++
T Consensus 199 GR~D~~gpfHs~~e~Yc~~i~~ld~~T~--aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~HfndLy~FdP 275 (392)
T KOG4693|consen 199 GRSDESGPFHSIHEQYCDTIMALDLATG--AWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFNDLYCFDP 275 (392)
T ss_pred cccccCCCccchhhhhcceeEEEecccc--ccccCCCCCcCCCcccccceEEE-cceEEEecccchhhhhhhcceeeccc
Confidence 9843 224677889999999 99999888888999999988777 99999999997754 46899999999
Q ss_pred CCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcC
Q 001895 316 HRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGAL 353 (999)
Q Consensus 316 ~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~ 353 (999)
.+. .|.-+.+.+..|.+|..+++++.++++|+|||..
T Consensus 276 ~t~-~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 276 KTS-MWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred ccc-hheeeeccCCCCCcccceeEEEECCEEEEecCCC
Confidence 877 8888888899999999999999999999999964
No 28
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=1.5e-30 Score=294.13 Aligned_cols=284 Identities=16% Similarity=0.196 Sum_probs=210.3
Q ss_pred CCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCC--CcEEEecC
Q 001895 90 GPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT--NKWSRITP 167 (999)
Q Consensus 90 ~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t--~~W~~l~~ 167 (999)
..+.||.+.++ ++.|||+||.......- ...|. ...++++|+|+... .+|..+..
T Consensus 2 ~~~~g~~~~~~------------~~~l~v~GG~~~~~~~~---------~~~g~--~~~~~~v~~~~~~~~~~~W~~~~~ 58 (323)
T TIGR03548 2 LGVAGCYAGII------------GDYILVAGGCNFPEDPL---------AEGGK--KKNYKGIYIAKDENSNLKWVKDGQ 58 (323)
T ss_pred CceeeEeeeEE------------CCEEEEeeccCCCCCch---------hhCCc--EEeeeeeEEEecCCCceeEEEccc
Confidence 45678888888 78999999986543100 00111 12778999996333 37999876
Q ss_pred CCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceE-EEeecCCCCCCCcccEEEEECCcEEEEEcc
Q 001895 168 FGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWH-RVVVQGPGPGPRYGHVMALVGQRYLMAIGG 246 (999)
Q Consensus 168 ~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~-~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG 246 (999)
+ |.+|..|++++++++||++||.... ...+++++||+.+.+ |. .+...+++|.+|..|+++++++ +|||+||
T Consensus 59 l---p~~r~~~~~~~~~~~lyviGG~~~~-~~~~~v~~~d~~~~~--w~~~~~~~~~lp~~~~~~~~~~~~~-~iYv~GG 131 (323)
T TIGR03548 59 L---PYEAAYGASVSVENGIYYIGGSNSS-ERFSSVYRITLDESK--EELICETIGNLPFTFENGSACYKDG-TLYVGGG 131 (323)
T ss_pred C---CccccceEEEEECCEEEEEcCCCCC-CCceeEEEEEEcCCc--eeeeeeEcCCCCcCccCceEEEECC-EEEEEeC
Confidence 5 7899989999999999999998643 356899999998865 52 2233348999999999999998 8999999
Q ss_pred CCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEEC
Q 001895 247 NDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIA 326 (999)
Q Consensus 247 ~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~ 326 (999)
......++++|+||+.++ +|+++++++.. ++.+++++..+++||||||.++.. ..+++.|++.++ +|...
T Consensus 132 ~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~---~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~---~W~~~ 201 (323)
T TIGR03548 132 NRNGKPSNKSYLFNLETQ--EWFELPDFPGE---PRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKN---QWQKV 201 (323)
T ss_pred cCCCccCceEEEEcCCCC--CeeECCCCCCC---CCCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCC---eeEEC
Confidence 876667899999999999 99999865432 345556667799999999987543 467899999887 66666
Q ss_pred CCC----CCCCcceeEE-EEECCEEEEEcCcCCCCC----------------------------CcccCCeEEEEECCCC
Q 001895 327 PGV----SPSPRYQHAA-VFVNARLHVSGGALGGGR----------------------------MVEDSSSVAVLDTAAG 373 (999)
Q Consensus 327 ~g~----~P~~R~~hsa-v~~~~~L~V~GG~~~~~~----------------------------~~~~~~~v~vyD~~t~ 373 (999)
+.+ .|..+..+++ ++.+++|||+||.+.... .....+++++||+.++
T Consensus 202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 281 (323)
T TIGR03548 202 ADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG 281 (323)
T ss_pred CCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC
Confidence 543 2344444544 445799999999864210 0011367999999999
Q ss_pred eEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECCEEEEEcCCC-CCcCcCcE
Q 001895 374 VWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR-GGVLLDDL 433 (999)
Q Consensus 374 ~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~-~~~~l~Dv 433 (999)
+|+.++.++ ..+|+.+++++++++||++||.. .+.+...+
T Consensus 282 ~W~~~~~~p--------------------~~~r~~~~~~~~~~~iyv~GG~~~pg~rt~~~ 322 (323)
T TIGR03548 282 KWKSIGNSP--------------------FFARCGAALLLTGNNIFSINGELKPGVRTPDI 322 (323)
T ss_pred eeeEccccc--------------------ccccCchheEEECCEEEEEeccccCCcCCcCc
Confidence 999998661 14899999999999999999954 44555443
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=306.26 Aligned_cols=297 Identities=31% Similarity=0.508 Sum_probs=247.8
Q ss_pred cccCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccC-eEEEEECCCCc
Q 001895 83 EKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATA-DVHCYDVLTNK 161 (999)
Q Consensus 83 ~~~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-dv~~yD~~t~~ 161 (999)
...+..|.+|++|+++.+ ++++|||||...... ..+ |+|.||..+..
T Consensus 52 ~~~~~~p~~R~~hs~~~~------------~~~~~vfGG~~~~~~--------------------~~~~dl~~~d~~~~~ 99 (482)
T KOG0379|consen 52 DVLGVGPIPRAGHSAVLI------------GNKLYVFGGYGSGDR--------------------LTDLDLYVLDLESQL 99 (482)
T ss_pred ccCCCCcchhhccceeEE------------CCEEEEECCCCCCCc--------------------cccceeEEeecCCcc
Confidence 356789999999999999 789999999876553 112 79999999999
Q ss_pred EEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEE
Q 001895 162 WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYL 241 (999)
Q Consensus 162 W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~L 241 (999)
|......+..|.+|++|++++++++||+|||........++++.||+.+.+ |..+.+.+.+|.+|.+|+++++++ +|
T Consensus 100 w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~-~l 176 (482)
T KOG0379|consen 100 WTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRT--WSLLSPTGDPPPPRAGHSATVVGT-KL 176 (482)
T ss_pred cccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCc--EEEecCcCCCCCCcccceEEEECC-EE
Confidence 999999999999999999999999999999987656668999999999975 999999999999999999999997 99
Q ss_pred EEEccCCCCC-CCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCe
Q 001895 242 MAIGGNDGKR-PLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGR 320 (999)
Q Consensus 242 yv~GG~~g~~-~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~ 320 (999)
|||||.+... .+||+|+||+.+. +|.++...+..|.||..|+++++ ++++++|||.+.....++|+|.||..+
T Consensus 177 ~vfGG~~~~~~~~ndl~i~d~~~~--~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl~~--- 250 (482)
T KOG0379|consen 177 VVFGGIGGTGDSLNDLHIYDLETS--TWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDLST--- 250 (482)
T ss_pred EEECCccCcccceeeeeeeccccc--cceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEeeeccc---
Confidence 9999998766 8999999999999 99999999999998888877766 777777777775566899999999986
Q ss_pred EEEEECC--CCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccCcCCCCCCCcccccCCCC
Q 001895 321 WEWAIAP--GVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGD 398 (999)
Q Consensus 321 W~w~~~~--g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~ 398 (999)
|.|.... +..|.+|+.|+.++.+.+++|+||...... ..+.++|.||.++..|..+.....
T Consensus 251 ~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~--~~l~~~~~l~~~~~~w~~~~~~~~--------------- 313 (482)
T KOG0379|consen 251 WEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQ--EPLGDLYGLDLETLVWSKVESVGV--------------- 313 (482)
T ss_pred ceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccc--ccccccccccccccceeeeecccc---------------
Confidence 5666544 778999999999999999999999876521 237899999999999999988741
Q ss_pred CccCCCCcceeEEEEECC----EEEEEcCCC-CCcCcCcEEEeecc
Q 001895 399 AAVELTRRCRHAAAAVGD----LIFIYGGLR-GGVLLDDLLVAEDL 439 (999)
Q Consensus 399 ~~~~p~~R~~hsa~~~~~----~LyV~GG~~-~~~~l~Dv~~ld~~ 439 (999)
..|.+|..|+++.... .+.++||.. .....++++.+...
T Consensus 314 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (482)
T KOG0379|consen 314 --VRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIK 357 (482)
T ss_pred --ccccccccccceeeccCCccceeeecCccccccchhhccccccc
Confidence 2356888898887744 344455522 23556666655443
No 30
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=4.9e-30 Score=295.53 Aligned_cols=283 Identities=19% Similarity=0.231 Sum_probs=214.2
Q ss_pred cccCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECC--CC
Q 001895 83 EKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVL--TN 160 (999)
Q Consensus 83 ~~~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~--t~ 160 (999)
......|.||..++.+.+ +++|||+||.. .+.+|+||+. ++
T Consensus 20 ~~l~~lP~~~~~~~~~~~------------~~~iyv~gG~~-------------------------~~~~~~~d~~~~~~ 62 (376)
T PRK14131 20 EQLPDLPVPFKNGTGAID------------NNTVYVGLGSA-------------------------GTSWYKLDLNAPSK 62 (376)
T ss_pred ccCCCCCcCccCCeEEEE------------CCEEEEEeCCC-------------------------CCeEEEEECCCCCC
Confidence 344578899998888887 78999999962 1257899986 47
Q ss_pred cEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCC-----CCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEE
Q 001895 161 KWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPA-----GLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMAL 235 (999)
Q Consensus 161 ~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~-----~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v 235 (999)
.|..+.++ +..+|.+|++++++++|||+||.... ....+++|+||+.++ +|+.++. ..|.+|.+|++++
T Consensus 63 ~W~~l~~~--p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n--~W~~~~~--~~p~~~~~~~~~~ 136 (376)
T PRK14131 63 GWTKIAAF--PGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN--SWQKLDT--RSPVGLAGHVAVS 136 (376)
T ss_pred CeEECCcC--CCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC--EEEeCCC--CCCCcccceEEEE
Confidence 89999876 12589999999999999999998641 134689999999986 5999872 3577888898877
Q ss_pred -ECCcEEEEEccCCCC----------------------------------CCCCeEEEEECCCCCceEEEcccCCCCCCC
Q 001895 236 -VGQRYLMAIGGNDGK----------------------------------RPLADVWALDTAAKPYEWRKLEPEGEGPPP 280 (999)
Q Consensus 236 -~~~~~Lyv~GG~~g~----------------------------------~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~ 280 (999)
.++ +||++||.+.. ...+++++||+.++ +|+.+.+++ .+
T Consensus 137 ~~~~-~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~--~W~~~~~~p---~~ 210 (376)
T PRK14131 137 LHNG-KAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN--QWKNAGESP---FL 210 (376)
T ss_pred eeCC-EEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC--eeeECCcCC---CC
Confidence 565 99999998532 12578999999999 999987653 33
Q ss_pred ccceEEEEEeCCEEEEEeccCCCCCCcccEEEE--ecCCCCeEEEEECCCCCCCCcc--------eeEEEEECCEEEEEc
Q 001895 281 CMYATASARSDGLLLLCGGRDASSVPLASAYGL--AKHRDGRWEWAIAPGVSPSPRY--------QHAAVFVNARLHVSG 350 (999)
Q Consensus 281 r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~--~~~~~~~W~w~~~~g~~P~~R~--------~hsav~~~~~L~V~G 350 (999)
++.+++++..+++|||+||.........++|.+ ++.++ +|...+.+ |.+|. .+.+++++++|||+|
T Consensus 211 ~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~---~W~~~~~~-p~~~~~~~~~~~~~~~a~~~~~~iyv~G 286 (376)
T PRK14131 211 GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNL---KWQKLPDL-PPAPGGSSQEGVAGAFAGYSNGVLLVAG 286 (376)
T ss_pred CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCc---ceeecCCC-CCCCcCCcCCccceEeceeECCEEEEee
Confidence 466677778899999999986554445566655 44444 67777765 44442 344678899999999
Q ss_pred CcCCCCCC-------------cccCCeEEEEECCCCeEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECCE
Q 001895 351 GALGGGRM-------------VEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDL 417 (999)
Q Consensus 351 G~~~~~~~-------------~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~ 417 (999)
|.+..... ......+++||+++++|+.+..+ |.+|..|++++++++
T Consensus 287 G~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---------------------p~~r~~~~av~~~~~ 345 (376)
T PRK14131 287 GANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL---------------------PQGLAYGVSVSWNNG 345 (376)
T ss_pred ccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC---------------------CCCccceEEEEeCCE
Confidence 98642210 01123578999999999998877 678999999999999
Q ss_pred EEEEcCCCC-CcCcCcEEEeecc
Q 001895 418 IFIYGGLRG-GVLLDDLLVAEDL 439 (999)
Q Consensus 418 LyV~GG~~~-~~~l~Dv~~ld~~ 439 (999)
|||+||... +..++|++.++..
T Consensus 346 iyv~GG~~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 346 VLLIGGETAGGKAVSDVTLLSWD 368 (376)
T ss_pred EEEEcCCCCCCcEeeeEEEEEEc
Confidence 999999764 4689999888743
No 31
>PLN02153 epithiospecifier protein
Probab=99.97 E-value=6.2e-30 Score=291.14 Aligned_cols=256 Identities=25% Similarity=0.408 Sum_probs=200.2
Q ss_pred CCCcEEEecCCC-CCCCCCcCcEEEEeCCEEEEEcccCCC-CCCcCcEEEEecCCCCCceEEEeecCCCCCC-CcccEEE
Q 001895 158 LTNKWSRITPFG-EPPTPRAAHVATAVGTMVVIQGGIGPA-GLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP-RYGHVMA 234 (999)
Q Consensus 158 ~t~~W~~l~~~g-~~P~pR~~hsa~~~g~~iyv~GG~~~~-~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~-R~~h~~~ 234 (999)
....|.++...+ ..|.||.+|++++++++|||+||.... ....+++|+||+.++ +|+.+++.+..|.. +.+|+++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTH--TWSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCC--EEEEcCccCCCCCCccCceEEE
Confidence 456799998753 468999999999999999999998532 334589999999986 59998865555543 4588999
Q ss_pred EECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCC--CCCCccceEEEEEeCCEEEEEeccCCCC-----CCc
Q 001895 235 LVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGE--GPPPCMYATASARSDGLLLLCGGRDASS-----VPL 307 (999)
Q Consensus 235 v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~--~P~~r~~~~a~~~~~~~LyvfGG~~~~~-----~~~ 307 (999)
++++ +||||||.++...++++++||+.++ +|+.++.+.. .|.+|..|+ +++.+++||||||.+... ..+
T Consensus 83 ~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 83 AVGT-KLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHS-MASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EECC-EEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeE-EEEECCEEEEECCccCCCccCCCccc
Confidence 9998 8999999988778899999999999 9999876532 255565554 456689999999986432 235
Q ss_pred ccEEEEecCCCCeEEEEECCC--CCCCCcceeEEEEECCEEEEEcCcCCC----CCCcccCCeEEEEECCCCeEEEcccC
Q 001895 308 ASAYGLAKHRDGRWEWAIAPG--VSPSPRYQHAAVFVNARLHVSGGALGG----GRMVEDSSSVAVLDTAAGVWCDTKSV 381 (999)
Q Consensus 308 ~d~~~~~~~~~~~W~w~~~~g--~~P~~R~~hsav~~~~~L~V~GG~~~~----~~~~~~~~~v~vyD~~t~~W~~v~~~ 381 (999)
++++.|++.++ +|...+. ..|.+|.+|++++++++|||+||.... +......+++++||+.+++|+++...
T Consensus 159 ~~v~~yd~~~~---~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 159 RTIEAYNIADG---KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ceEEEEECCCC---eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 78999999877 5555553 346789999999999999999997532 11112267899999999999998765
Q ss_pred cCCCCCCCcccccCCCCCccCCCCcceeEEEEECCEEEEEcCCC---------CCcCcCcEEEeeccc
Q 001895 382 VTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR---------GGVLLDDLLVAEDLA 440 (999)
Q Consensus 382 ~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~---------~~~~l~Dv~~ld~~~ 440 (999)
+. .|.+|..|++++++++||||||.. .+.+++|+|.+|...
T Consensus 236 g~------------------~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 236 GA------------------KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred CC------------------CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence 22 367999999999999999999963 245678999999754
No 32
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=2.7e-30 Score=309.25 Aligned_cols=242 Identities=24% Similarity=0.433 Sum_probs=217.3
Q ss_pred ecccCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCC-CCCCCCCCCCCCCCCCcccccccccCeEEEEECCCC
Q 001895 82 IEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATA-LEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTN 160 (999)
Q Consensus 82 ~~~~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~ 160 (999)
+......|.+|..|+++++ +++||++||.+. .. ..+.+++||+.++
T Consensus 313 w~~~a~m~~~r~~~~~~~~------------~~~lYv~GG~~~~~~---------------------~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 313 WSSLAPMPSPRCRVGVAVL------------NGKLYVVGGYDSGSD---------------------RLSSVERYDPRTN 359 (571)
T ss_pred EeecCCCCcccccccEEEE------------CCEEEEEccccCCCc---------------------ccceEEEecCCCC
Confidence 3455678999999999999 789999999984 32 7899999999999
Q ss_pred cEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcE
Q 001895 161 KWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRY 240 (999)
Q Consensus 161 ~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~ 240 (999)
+|+.+++| ..+|..|++++++++||+.||.+ +....+.+++||+.++ +|+.+. +|+.+|++|+++++++ +
T Consensus 360 ~W~~~a~M---~~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~YDp~~~--~W~~va---~m~~~r~~~gv~~~~g-~ 429 (571)
T KOG4441|consen 360 QWTPVAPM---NTKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECYDPVTN--KWTPVA---PMLTRRSGHGVAVLGG-K 429 (571)
T ss_pred ceeccCCc---cCccccceeEEECCEEEEEeccc-cccccccEEEecCCCC--cccccC---CCCcceeeeEEEEECC-E
Confidence 99999998 69999999999999999999997 4456789999999996 599997 8999999999999998 9
Q ss_pred EEEEccCCCCC-CCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCC
Q 001895 241 LMAIGGNDGKR-PLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDG 319 (999)
Q Consensus 241 Lyv~GG~~g~~-~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~ 319 (999)
||++||.++.. +++.+++||+.++ +|+.++++.. ++.++++++.+++||++||.++ ...+..++.|++.++
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~----~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~- 501 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNT----RRSGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETN- 501 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCC--ceeecCCccc----ccccceEEEECCEEEEECCccC-CCccceEEEEcCCCC-
Confidence 99999999888 8999999999999 9999999988 5777778888999999999998 446777999999999
Q ss_pred eEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccC
Q 001895 320 RWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (999)
Q Consensus 320 ~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~ 381 (999)
+|..+..+ +.+|..++++++++++|++||+++... ++.+.+|||++++|+....+
T Consensus 502 --~W~~v~~m-~~~rs~~g~~~~~~~ly~vGG~~~~~~----l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 502 --QWTMVAPM-TSPRSAVGVVVLGGKLYAVGGFDGNNN----LNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred --ceeEcccC-ccccccccEEEECCEEEEEecccCccc----cceeEEcCCCCCceeeCCCc
Confidence 88888666 689999999999999999999877654 89999999999999998874
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=2.9e-30 Score=278.10 Aligned_cols=266 Identities=27% Similarity=0.480 Sum_probs=219.8
Q ss_pred eeecccCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCC
Q 001895 80 AVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT 159 (999)
Q Consensus 80 ~~~~~~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t 159 (999)
.+.+....+|.||...++++-+. .+.|+||||...+....- ++||+|.||+.+
T Consensus 55 ~~~e~~~~~PspRsn~sl~~nPe----------keELilfGGEf~ngqkT~-----------------vYndLy~Yn~k~ 107 (521)
T KOG1230|consen 55 HVVETSVPPPSPRSNPSLFANPE----------KEELILFGGEFYNGQKTH-----------------VYNDLYSYNTKK 107 (521)
T ss_pred eeeeccCCCCCCCCCcceeeccC----------cceeEEecceeecceeEE-----------------EeeeeeEEeccc
Confidence 34566778999999999998754 467999999765433221 899999999999
Q ss_pred CcEEEecCCCCCCCCCcCcEEEEeC-CEEEEEcccCCC-----CCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEE
Q 001895 160 NKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPA-----GLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVM 233 (999)
Q Consensus 160 ~~W~~l~~~g~~P~pR~~hsa~~~g-~~iyv~GG~~~~-----~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~ 233 (999)
++|+++... ..|.||.+|.++++. |.+|+|||.... -....|+|+||+.++ +|+++...| .|.+|++|-|
T Consensus 108 ~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~tr--kweql~~~g-~PS~RSGHRM 183 (521)
T KOG1230|consen 108 NEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTR--KWEQLEFGG-GPSPRSGHRM 183 (521)
T ss_pred cceeEeccC-CCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccc--hheeeccCC-CCCCCcccee
Confidence 999999765 379999999999996 799999996422 234689999999997 599998665 8999999999
Q ss_pred EEECCcEEEEEccCCC----CCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCC-------
Q 001895 234 ALVGQRYLMAIGGNDG----KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA------- 302 (999)
Q Consensus 234 ~v~~~~~Lyv~GG~~g----~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~------- 302 (999)
+++.. +|++|||+.. ..++||||+||+.+- +|+++.+.+..|.||.++...+..++.|||+||+..
T Consensus 184 vawK~-~lilFGGFhd~nr~y~YyNDvy~FdLdty--kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~ 260 (521)
T KOG1230|consen 184 VAWKR-QLILFGGFHDSNRDYIYYNDVYAFDLDTY--KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDV 260 (521)
T ss_pred EEeee-eEEEEcceecCCCceEEeeeeEEEeccce--eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhh
Confidence 99998 8999999843 346999999999887 999999988889999999888888999999999742
Q ss_pred -CCCCcccEEEEecCC--CCeEEEEECC--CCCCCCcceeEEEEEC-CEEEEEcCcCCCC-----CCcccCCeEEEEECC
Q 001895 303 -SSVPLASAYGLAKHR--DGRWEWAIAP--GVSPSPRYQHAAVFVN-ARLHVSGGALGGG-----RMVEDSSSVAVLDTA 371 (999)
Q Consensus 303 -~~~~~~d~~~~~~~~--~~~W~w~~~~--g~~P~~R~~hsav~~~-~~L~V~GG~~~~~-----~~~~~~~~v~vyD~~ 371 (999)
.+...+|+|.+++.. ...|.|..+. ++.|.||.++++++.. ++-+.|||..+-. -.....|++|.||+.
T Consensus 261 dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt 340 (521)
T KOG1230|consen 261 DKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLT 340 (521)
T ss_pred hcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecc
Confidence 345789999998876 4589998876 6889999999998885 5999999986511 112338999999999
Q ss_pred CCeEEEcc
Q 001895 372 AGVWCDTK 379 (999)
Q Consensus 372 t~~W~~v~ 379 (999)
.++|....
T Consensus 341 ~nrW~~~q 348 (521)
T KOG1230|consen 341 RNRWSEGQ 348 (521)
T ss_pred cchhhHhh
Confidence 99999864
No 34
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.97 E-value=2.4e-30 Score=277.01 Aligned_cols=218 Identities=47% Similarity=0.755 Sum_probs=174.8
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhh
Q 001895 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINAL 780 (999)
Q Consensus 701 ~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~ 780 (999)
+|||||||++.+|.++|+.++....+ .+||||||||||+.+.||+.+|+.++.. |.++++||||||.+.++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d------~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~ 73 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPND------KLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFL 73 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCC------EEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhh
Confidence 58999999999999999999886554 8999999999999999999999999888 8899999999999998887
Q ss_pred cCChHHHH-----HHhCCccchhhhhhhhhhhcccceeEEEcC-cEEEecCCccCcccCHHHhhhccCCcccCCCCceee
Q 001895 781 FGFRIECI-----ERMGERDGIWAWHRINRLFNWLPLAALIEK-KIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLM 854 (999)
Q Consensus 781 ~gf~~e~~-----~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~-~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~ 854 (999)
+++..+.. ..........++..+.++|..||+++.++. +++|||||+.+.....+++. ..+ ......
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~~-~~~~~~ 146 (225)
T cd00144 74 YGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EEP-EDQLPE 146 (225)
T ss_pred cCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cCc-ccccce
Confidence 77654421 001111234577888899999999999987 99999999998866555444 111 123678
Q ss_pred ecccCCCCCCCCCCCCccCCCCCCceeeCHHHHHHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCe
Q 001895 855 DLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNA 934 (999)
Q Consensus 855 dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ 934 (999)
+++|++|.... .....+.|+. |+++++.|++.++.++|||||+++.+|+.....+++|||+|++.|++..+|.
T Consensus 147 ~~lw~r~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~ 219 (225)
T cd00144 147 DLLWSDPLELP--GGFGSSRRGG-----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNK 219 (225)
T ss_pred eeeecCCCCCC--CCCcCCCCCC-----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCcc
Confidence 99999997532 2222333332 8999999999999999999999999998777789999999999998877777
Q ss_pred EEEEE
Q 001895 935 GAILV 939 (999)
Q Consensus 935 ga~l~ 939 (999)
.+++.
T Consensus 220 l~~~~ 224 (225)
T cd00144 220 LAALV 224 (225)
T ss_pred EEEEe
Confidence 76654
No 35
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=1.8e-29 Score=303.39 Aligned_cols=239 Identities=11% Similarity=0.119 Sum_probs=200.6
Q ss_pred ccCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEE
Q 001895 84 KKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWS 163 (999)
Q Consensus 84 ~~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~ 163 (999)
.....|.+|.+|+++++ +++||++||...... .++++++||+.+++|.
T Consensus 286 ~l~~mp~~r~~~~~a~l------------~~~IYviGG~~~~~~--------------------~~~~v~~Yd~~~n~W~ 333 (557)
T PHA02713 286 VISTIPNHIINYASAIV------------DNEIIIAGGYNFNNP--------------------SLNKVYKINIENKIHV 333 (557)
T ss_pred ECCCCCccccceEEEEE------------CCEEEEEcCCCCCCC--------------------ccceEEEEECCCCeEe
Confidence 34578899999999988 789999999753221 5789999999999999
Q ss_pred EecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEE
Q 001895 164 RITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMA 243 (999)
Q Consensus 164 ~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv 243 (999)
.++++ |.+|.+|++++++++||++||.+.. ...+++++||+.++ +|+.++ ++|.+|.+|+++++++ +||+
T Consensus 334 ~~~~m---~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~--~W~~~~---~mp~~r~~~~~~~~~g-~IYv 403 (557)
T PHA02713 334 ELPPM---IKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDD--KWKMLP---DMPIALSSYGMCVLDQ-YIYI 403 (557)
T ss_pred eCCCC---cchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCC--eEEECC---CCCcccccccEEEECC-EEEE
Confidence 99887 7899999999999999999998533 35678999999986 499987 8999999999999998 8999
Q ss_pred EccCCCCC------------------CCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCC
Q 001895 244 IGGNDGKR------------------PLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSV 305 (999)
Q Consensus 244 ~GG~~g~~------------------~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~ 305 (999)
+||.++.. .++.+++||+.++ +|+.++++.. ++..+++++.+++||++||.++...
T Consensus 404 iGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~----~r~~~~~~~~~~~IYv~GG~~~~~~ 477 (557)
T PHA02713 404 IGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWT----GTIRPGVVSHKDDIYVVCDIKDEKN 477 (557)
T ss_pred EeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCCCc----ccccCcEEEECCEEEEEeCCCCCCc
Confidence 99986421 3688999999999 9999988765 3455566777999999999875443
Q ss_pred CcccEEEEecCC-CCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccC
Q 001895 306 PLASAYGLAKHR-DGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (999)
Q Consensus 306 ~~~d~~~~~~~~-~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~ 381 (999)
....++.||+.+ + +|..++.+ |.+|..+++++++++|||+||+++. ..+++||+.|++|+.+.+.
T Consensus 478 ~~~~ve~Ydp~~~~---~W~~~~~m-~~~r~~~~~~~~~~~iyv~Gg~~~~-------~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 478 VKTCIFRYNTNTYN---GWELITTT-ESRLSALHTILHDNTIMMLHCYESY-------MLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred cceeEEEecCCCCC---CeeEcccc-CcccccceeEEECCEEEEEeeecce-------eehhhcCcccccccchhhh
Confidence 345678999998 6 66777765 7999999999999999999998762 3689999999999988765
No 36
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=290.39 Aligned_cols=245 Identities=31% Similarity=0.503 Sum_probs=215.2
Q ss_pred CCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcC-cEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEc
Q 001895 167 PFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAE-DLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIG 245 (999)
Q Consensus 167 ~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~-dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~G 245 (999)
..+..|.+|+.|+++.+++++|||||........+ |+|+||+.+. .|.+....|..|.+|++|+++++++ +||+||
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~--~w~~~~~~g~~p~~r~g~~~~~~~~-~l~lfG 129 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQ--LWTKPAATGDEPSPRYGHSLSAVGD-KLYLFG 129 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCc--ccccccccCCCCCcccceeEEEECC-eEEEEc
Confidence 44567999999999999999999999875544433 7999999985 5999999999999999999999998 999999
Q ss_pred cCCC-CCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEE
Q 001895 246 GNDG-KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWA 324 (999)
Q Consensus 246 G~~g-~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~ 324 (999)
|.+. ...+++++.||+.+. +|..+.+.+..|++|.+|+++++ +++||||||.+.....++++|.|+..+. +|...
T Consensus 130 G~~~~~~~~~~l~~~d~~t~--~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~~~~ndl~i~d~~~~-~W~~~ 205 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTR--TWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTGDSLNDLHIYDLETS-TWSEL 205 (482)
T ss_pred cccCCCCChhheEeccCCCC--cEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcccceeeeeeeccccc-cceec
Confidence 9984 667899999999999 99999999998888888888777 6999999999888778999999999877 58888
Q ss_pred ECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccCcCCCCCCCcccccCCCCCccCCC
Q 001895 325 IAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELT 404 (999)
Q Consensus 325 ~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~ 404 (999)
.+.+..|.||++|+++++++++||+||.+... .+++|+|+||+.+.+|..+...+ ..|.
T Consensus 206 ~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~---~~l~D~~~ldl~~~~W~~~~~~g------------------~~p~ 264 (482)
T KOG0379|consen 206 DTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGD---VYLNDVHILDLSTWEWKLLPTGG------------------DLPS 264 (482)
T ss_pred ccCCCCCCCCCCceEEEECCeEEEEeccccCC---ceecceEeeecccceeeeccccC------------------CCCC
Confidence 88899999999999999999999999998333 34899999999999999776552 3478
Q ss_pred CcceeEEEEECCEEEEEcCCCCC-c-CcCcEEEeecc
Q 001895 405 RRCRHAAAAVGDLIFIYGGLRGG-V-LLDDLLVAEDL 439 (999)
Q Consensus 405 ~R~~hsa~~~~~~LyV~GG~~~~-~-~l~Dv~~ld~~ 439 (999)
+|++|.++..+++++++||.... . .+.|+|.|+..
T Consensus 265 ~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~ 301 (482)
T KOG0379|consen 265 PRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE 301 (482)
T ss_pred CcceeeeEEECCEEEEEcCCccccccccccccccccc
Confidence 99999999999999999997764 3 79999999876
No 37
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=4.1e-28 Score=292.75 Aligned_cols=249 Identities=16% Similarity=0.251 Sum_probs=206.7
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCc
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~ 229 (999)
..+.+|+..+++|..+... | .+..|+++++++.||++||........+++++||+.++ +|..++ ++|.+|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~---~~~~~R~ 334 (534)
T PHA03098 264 YNYITNYSPLSEINTIIDI---H-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTK--SWNKVP---ELIYPRK 334 (534)
T ss_pred ceeeecchhhhhcccccCc---c-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCC--eeeECC---CCCcccc
Confidence 3456788888999988643 2 35567999999999999998766666789999999986 599887 8899999
Q ss_pred ccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCccc
Q 001895 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLAS 309 (999)
Q Consensus 230 ~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d 309 (999)
+|+++++++ +||++||.++...++++++||+.++ +|+.+++++. +|.. ++++..+++||++||.......+++
T Consensus 335 ~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~lp~---~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~ 407 (534)
T PHA03098 335 NPGVTVFNN-RIYVIGGIYNSISLNTVESWKPGES--KWREEPPLIF---PRYN-PCVVNVNNLIYVIGGISKNDELLKT 407 (534)
T ss_pred cceEEEECC-EEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCcCc---CCcc-ceEEEECCEEEEECCcCCCCcccce
Confidence 999999988 8999999987778899999999999 9999887654 3444 4556679999999998665556789
Q ss_pred EEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccCcCCCCCCC
Q 001895 310 AYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGR 389 (999)
Q Consensus 310 ~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~ 389 (999)
++.|++.++ +|...+.+ |.+|.+|+++.++++|||+||.+..... ...+.+++||+.+++|+.++.+
T Consensus 408 v~~yd~~t~---~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~-~~~~~v~~yd~~~~~W~~~~~~-------- 474 (534)
T PHA03098 408 VECFSLNTN---KWSKGSPL-PISHYGGCAIYHDGKIYVIGGISYIDNI-KVYNIVESYNPVTNKWTELSSL-------- 474 (534)
T ss_pred EEEEeCCCC---eeeecCCC-CccccCceEEEECCEEEEECCccCCCCC-cccceEEEecCCCCceeeCCCC--------
Confidence 999999887 67777655 7899999999999999999998654321 2256799999999999999876
Q ss_pred cccccCCCCCccCCCCcceeEEEEECCEEEEEcCCCCCcCcCcEEEeeccc
Q 001895 390 YSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLA 440 (999)
Q Consensus 390 ~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~~~~~l~Dv~~ld~~~ 440 (999)
+.+|..|++++++++|||+||.++....++++++|...
T Consensus 475 -------------~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 475 -------------NFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred -------------CcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 56899999999999999999998777789999998553
No 38
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=4.6e-27 Score=283.65 Aligned_cols=234 Identities=18% Similarity=0.274 Sum_probs=193.5
Q ss_pred CCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEecCCCCC
Q 001895 92 RCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEP 171 (999)
Q Consensus 92 R~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l~~~g~~ 171 (999)
+..|+++++ +++||++||...... ..+++++||+.+++|..++.+
T Consensus 285 ~~~~~~~~~------------~~~lyv~GG~~~~~~--------------------~~~~v~~yd~~~~~W~~~~~~--- 329 (534)
T PHA03098 285 VYCFGSVVL------------NNVIYFIGGMNKNNL--------------------SVNSVVSYDTKTKSWNKVPEL--- 329 (534)
T ss_pred cccceEEEE------------CCEEEEECCCcCCCC--------------------eeccEEEEeCCCCeeeECCCC---
Confidence 445677777 789999999865332 567999999999999998776
Q ss_pred CCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCC-CC
Q 001895 172 PTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGND-GK 250 (999)
Q Consensus 172 P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~-g~ 250 (999)
|.+|.+|++++++++||++||.. .....+++++||+.++ +|+.++ ++|.+|++|+++++++ +||++||.. +.
T Consensus 330 ~~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~--~W~~~~---~lp~~r~~~~~~~~~~-~iYv~GG~~~~~ 402 (534)
T PHA03098 330 IYPRKNPGVTVFNNRIYVIGGIY-NSISLNTVESWKPGES--KWREEP---PLIFPRYNPCVVNVNN-LIYVIGGISKND 402 (534)
T ss_pred CcccccceEEEECCEEEEEeCCC-CCEecceEEEEcCCCC--ceeeCC---CcCcCCccceEEEECC-EEEEECCcCCCC
Confidence 78999999999999999999986 3445689999999986 599887 8999999999999988 899999974 34
Q ss_pred CCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCC--CCcccEEEEecCCCCeEEEEECCC
Q 001895 251 RPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS--VPLASAYGLAKHRDGRWEWAIAPG 328 (999)
Q Consensus 251 ~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~--~~~~d~~~~~~~~~~~W~w~~~~g 328 (999)
..++++++||+.++ +|+.+.+++ .++..+ +++..+++||++||.+... ..++.++.|++.++ +|...+.
T Consensus 403 ~~~~~v~~yd~~t~--~W~~~~~~p---~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~---~W~~~~~ 473 (534)
T PHA03098 403 ELLKTVECFSLNTN--KWSKGSPLP---ISHYGG-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN---KWTELSS 473 (534)
T ss_pred cccceEEEEeCCCC--eeeecCCCC---ccccCc-eEEEECCEEEEECCccCCCCCcccceEEEecCCCC---ceeeCCC
Confidence 45799999999999 999987654 334444 4556699999999986543 23567999999988 7777775
Q ss_pred CCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccC
Q 001895 329 VSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (999)
Q Consensus 329 ~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~ 381 (999)
+ |.+|..++++.++++|||+||.+.... .+++++||+++++|..+..+
T Consensus 474 ~-~~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 474 L-NFPRINASLCIFNNKIYVVGGDKYEYY----INEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred C-CcccccceEEEECCEEEEEcCCcCCcc----cceeEEEeCCCCEEEecCCC
Confidence 5 688999999999999999999876432 67899999999999998875
No 39
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=6.7e-26 Score=256.15 Aligned_cols=224 Identities=18% Similarity=0.209 Sum_probs=179.7
Q ss_pred ccCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcE-
Q 001895 84 KKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKW- 162 (999)
Q Consensus 84 ~~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W- 162 (999)
.....|.||..|+++.+ +++||++||..... .++++|+||+.+++|
T Consensus 55 ~~~~lp~~r~~~~~~~~------------~~~lyviGG~~~~~---------------------~~~~v~~~d~~~~~w~ 101 (323)
T TIGR03548 55 KDGQLPYEAAYGASVSV------------ENGIYYIGGSNSSE---------------------RFSSVYRITLDESKEE 101 (323)
T ss_pred EcccCCccccceEEEEE------------CCEEEEEcCCCCCC---------------------CceeEEEEEEcCCcee
Confidence 34578999988888887 78999999986433 678999999999998
Q ss_pred ---EEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCC-CCCcccEEEEECC
Q 001895 163 ---SRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP-GPRYGHVMALVGQ 238 (999)
Q Consensus 163 ---~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P-~~R~~h~~~v~~~ 238 (999)
..+++ .|.+|..|++++++++|||+||... ....+++++||+.++ +|+.++ ++| .+|..|+++++++
T Consensus 102 ~~~~~~~~---lp~~~~~~~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~~~~--~W~~~~---~~p~~~r~~~~~~~~~~ 172 (323)
T TIGR03548 102 LICETIGN---LPFTFENGSACYKDGTLYVGGGNRN-GKPSNKSYLFNLETQ--EWFELP---DFPGEPRVQPVCVKLQN 172 (323)
T ss_pred eeeeEcCC---CCcCccCceEEEECCEEEEEeCcCC-CccCceEEEEcCCCC--CeeECC---CCCCCCCCcceEEEECC
Confidence 44444 4889999999999999999999743 344689999999986 599987 666 4799999988988
Q ss_pred cEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCC--CCCCccceEEEEEeCCEEEEEeccCCCCC-----------
Q 001895 239 RYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGE--GPPPCMYATASARSDGLLLLCGGRDASSV----------- 305 (999)
Q Consensus 239 ~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~--~P~~r~~~~a~~~~~~~LyvfGG~~~~~~----------- 305 (999)
+|||+||.++.. ..++++||+.++ +|+.++++.. .|..+..++++++.+++||++||.+....
T Consensus 173 -~iYv~GG~~~~~-~~~~~~yd~~~~--~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 248 (323)
T TIGR03548 173 -ELYVFGGGSNIA-YTDGYKYSPKKN--QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMK 248 (323)
T ss_pred -EEEEEcCCCCcc-ccceEEEecCCC--eeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhcc
Confidence 899999987643 568999999999 9999987643 23334456666777899999999874310
Q ss_pred --------------------CcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCC
Q 001895 306 --------------------PLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGG 356 (999)
Q Consensus 306 --------------------~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~ 356 (999)
..+.++.||+.++ +|...+.++..+|..++++.++++|||+||....+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 249 DESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG---KWKSIGNSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred chhhhhhHHHHhCCCccccCcCceEEEEECCCC---eeeEcccccccccCchheEEECCEEEEEeccccCC
Confidence 1357999999988 77777755446899999999999999999986654
No 40
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=1.6e-25 Score=265.60 Aligned_cols=208 Identities=18% Similarity=0.276 Sum_probs=174.9
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeCCEEEEEcc
Q 001895 113 GPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGG 192 (999)
Q Consensus 113 ~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG 192 (999)
++.||++||..... ..+.+++||+.+++|..++++ |.+|..|++++++++||++||
T Consensus 271 ~~~lyviGG~~~~~---------------------~~~~v~~Ydp~~~~W~~~~~m---~~~r~~~~~v~~~~~iYviGG 326 (480)
T PHA02790 271 GEVVYLIGGWMNNE---------------------IHNNAIAVNYISNNWIPIPPM---NSPRLYASGVPANNKLYVVGG 326 (480)
T ss_pred CCEEEEEcCCCCCC---------------------cCCeEEEEECCCCEEEECCCC---CchhhcceEEEECCEEEEECC
Confidence 78999999985432 667899999999999999987 789999999999999999999
Q ss_pred cCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcc
Q 001895 193 IGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (999)
Q Consensus 193 ~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~ 272 (999)
... .+.+++||+.++ +|+.++ ++|.+|.+|+++++++ +||++||.++. .+.+++||+.++ +|+.++
T Consensus 327 ~~~----~~sve~ydp~~n--~W~~~~---~l~~~r~~~~~~~~~g-~IYviGG~~~~--~~~ve~ydp~~~--~W~~~~ 392 (480)
T PHA02790 327 LPN----PTSVERWFHGDA--AWVNMP---SLLKPRCNPAVASINN-VIYVIGGHSET--DTTTEYLLPNHD--QWQFGP 392 (480)
T ss_pred cCC----CCceEEEECCCC--eEEECC---CCCCCCcccEEEEECC-EEEEecCcCCC--CccEEEEeCCCC--EEEeCC
Confidence 742 257899999875 599987 8999999999999998 89999998654 368999999999 999998
Q ss_pred cCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCc
Q 001895 273 PEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGA 352 (999)
Q Consensus 273 ~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~ 352 (999)
++.. +|.. ++++..+++||++||. ...|++.++ +|...+++ |.+|..+++++++++|||+||.
T Consensus 393 ~m~~---~r~~-~~~~~~~~~IYv~GG~---------~e~ydp~~~---~W~~~~~m-~~~r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 393 STYY---PHYK-SCALVFGRRLFLVGRN---------AEFYCESSN---TWTLIDDP-IYPRDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred CCCC---cccc-ceEEEECCEEEEECCc---------eEEecCCCC---cEeEcCCC-CCCccccEEEEECCEEEEECCc
Confidence 8755 2444 4556679999999984 456788777 67777766 6899999999999999999998
Q ss_pred CCCCCCcccCCeEEEEECCCCeEEEcc
Q 001895 353 LGGGRMVEDSSSVAVLDTAAGVWCDTK 379 (999)
Q Consensus 353 ~~~~~~~~~~~~v~vyD~~t~~W~~v~ 379 (999)
++.. ..+.+++||+++++|+...
T Consensus 456 ~~~~----~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 456 YRGS----YIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred CCCc----ccceEEEEECCCCeEEecC
Confidence 7533 2578999999999998653
No 41
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.93 E-value=3.7e-25 Score=238.85 Aligned_cols=245 Identities=23% Similarity=0.381 Sum_probs=197.6
Q ss_pred CCCCCCcCcEEEEe--CCEEEEEcccCCCC---CCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEE
Q 001895 170 EPPTPRAAHVATAV--GTMVVIQGGIGPAG---LSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAI 244 (999)
Q Consensus 170 ~~P~pR~~hsa~~~--g~~iyv~GG~~~~~---~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~ 244 (999)
.+|+||.+.++++. .+.|++|||..-.+ ...+|+|.|++.+++ |.++... ..|.||++|.++++..+.||+|
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~e--Wkk~~sp-n~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNE--WKKVVSP-NAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccc--eeEeccC-CCcCCCccceeEEeccCeEEEe
Confidence 37999999999987 35999999954333 346999999999975 9998643 6789999999999987799999
Q ss_pred ccCCC----CC--CCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCC---CCCCcccEEEEec
Q 001895 245 GGNDG----KR--PLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA---SSVPLASAYGLAK 315 (999)
Q Consensus 245 GG~~g----~~--~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~---~~~~~~d~~~~~~ 315 (999)
||--. .. -+.|+|.||+.++ +|+++...+ .|.+|.+|-+++. ...|++|||+.. +..++||+|.|+.
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~tr--kweql~~~g-~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyNDvy~FdL 214 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTR--KWEQLEFGG-GPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYNDVYAFDL 214 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccc--hheeeccCC-CCCCCccceeEEe-eeeEEEEcceecCCCceEEeeeeEEEec
Confidence 99732 11 2789999999999 999998877 4788888877666 889999999743 3457899999998
Q ss_pred CCCCeEEEEECCCCCCCCcceeEEEEE-CCEEEEEcCcCCCCC-----CcccCCeEEEEECCC-----CeEEEcccCcCC
Q 001895 316 HRDGRWEWAIAPGVSPSPRYQHAAVFV-NARLHVSGGALGGGR-----MVEDSSSVAVLDTAA-----GVWCDTKSVVTS 384 (999)
Q Consensus 316 ~~~~~W~w~~~~g~~P~~R~~hsav~~-~~~L~V~GG~~~~~~-----~~~~~~~v~vyD~~t-----~~W~~v~~~~~~ 384 (999)
.+- +|......+..|.||.+|+..+. .+.|||+||++.... .....+|+|.++++. .+|.++.+.+.+
T Consensus 215 dty-kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~k 293 (521)
T KOG1230|consen 215 DTY-KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVK 293 (521)
T ss_pred cce-eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCC
Confidence 865 66666666777999999999998 999999999863110 012278999999999 799999988554
Q ss_pred CCCCCcccccCCCCCccCCCCcceeEEEEECC-EEEEEcCCCC---------CcCcCcEEEeeccc
Q 001895 385 PRTGRYSADAAGGDAAVELTRRCRHAAAAVGD-LIFIYGGLRG---------GVLLDDLLVAEDLA 440 (999)
Q Consensus 385 p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~-~LyV~GG~~~---------~~~l~Dv~~ld~~~ 440 (999)
|.+|.++++++..+ +-|.|||... +.++||+|.+|+..
T Consensus 294 ------------------PspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~ 341 (521)
T KOG1230|consen 294 ------------------PSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTR 341 (521)
T ss_pred ------------------CCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheeccc
Confidence 57999999999854 9999999543 47899999998754
No 42
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.93 E-value=2e-24 Score=246.45 Aligned_cols=222 Identities=18% Similarity=0.263 Sum_probs=169.5
Q ss_pred CCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCC-CCCcccEEEEECCcEEEEEccCCC
Q 001895 171 PPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP-GPRYGHVMALVGQRYLMAIGGNDG 249 (999)
Q Consensus 171 ~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P-~~R~~h~~~v~~~~~Lyv~GG~~g 249 (999)
.|.+|..+++|+++++|||+||.. .+++|+||+...+.+|..++ ++| .+|..|+++++++ +|||+||.+.
T Consensus 4 lp~~~~~~~~~~~~~~vyv~GG~~-----~~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~-~iYv~GG~~~ 74 (346)
T TIGR03547 4 LPVGFKNGTGAIIGDKVYVGLGSA-----GTSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDG-KLYVFGGIGK 74 (346)
T ss_pred CCccccCceEEEECCEEEEEcccc-----CCeeEEEECCCCCCCceECC---CCCCCCcccceEEEECC-EEEEEeCCCC
Confidence 588999999999999999999973 26799999864445799998 888 5899999999998 8999999854
Q ss_pred C------CCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCC-------------------
Q 001895 250 K------RPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS------------------- 304 (999)
Q Consensus 250 ~------~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~------------------- 304 (999)
. ..++++|+||+.++ +|+.++.. .|..+..+.++++.+++||++||.+...
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~--~W~~~~~~--~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 150 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKN--SWQKLDTR--SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKD 150 (346)
T ss_pred CCCCCcceecccEEEEECCCC--EEecCCCC--CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhh
Confidence 2 25789999999999 99999732 2344445555557899999999986421
Q ss_pred --------------CCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEE-
Q 001895 305 --------------VPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLD- 369 (999)
Q Consensus 305 --------------~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD- 369 (999)
..+++++.||+.++ +|...+.++..+|..|+++.++++|||+||...... ...++++||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~YDp~t~---~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~~y~~ 224 (346)
T TIGR03547 151 KLIAAYFSQPPEDYFWNKNVLSYDPSTN---QWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGL---RTAEVKQYLF 224 (346)
T ss_pred hhHHHHhCCChhHcCccceEEEEECCCC---ceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCc---cchheEEEEe
Confidence 01478999999988 777777664347899999999999999999864331 135566665
Q ss_pred -CCCCeEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECCEEEEEcCCC
Q 001895 370 -TAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR 425 (999)
Q Consensus 370 -~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~ 425 (999)
+++++|..+..++.. +. ..+..|..|++++++++|||+||.+
T Consensus 225 ~~~~~~W~~~~~m~~~-r~-------------~~~~~~~~~~a~~~~~~Iyv~GG~~ 267 (346)
T TIGR03547 225 TGGKLEWNKLPPLPPP-KS-------------SSQEGLAGAFAGISNGVLLVAGGAN 267 (346)
T ss_pred cCCCceeeecCCCCCC-CC-------------CccccccEEeeeEECCEEEEeecCC
Confidence 577799999887321 00 0122446777889999999999975
No 43
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.93 E-value=1.8e-24 Score=249.37 Aligned_cols=247 Identities=22% Similarity=0.299 Sum_probs=181.4
Q ss_pred CCC-CCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEe
Q 001895 87 DGP-GPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRI 165 (999)
Q Consensus 87 ~~P-~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l 165 (999)
..| .+|.+|+++.+ +++||||||........ ....++++|+||+.+++|+++
T Consensus 69 ~~p~~~r~~~~~v~~------------~~~IYV~GG~~~~~~~~---------------~~~~~~~v~~YD~~~n~W~~~ 121 (376)
T PRK14131 69 AFPGGPREQAVAAFI------------DGKLYVFGGIGKTNSEG---------------SPQVFDDVYKYDPKTNSWQKL 121 (376)
T ss_pred cCCCCCcccceEEEE------------CCEEEEEcCCCCCCCCC---------------ceeEcccEEEEeCCCCEEEeC
Confidence 345 48999999988 78999999986411000 001678999999999999999
Q ss_pred cCCCCCCCCCcCcEEEE-eCCEEEEEcccCCCC---------------------------------CCcCcEEEEecCCC
Q 001895 166 TPFGEPPTPRAAHVATA-VGTMVVIQGGIGPAG---------------------------------LSAEDLHVLDLTQQ 211 (999)
Q Consensus 166 ~~~g~~P~pR~~hsa~~-~g~~iyv~GG~~~~~---------------------------------~~~~dv~vyD~~t~ 211 (999)
+.. .|.+|.+|++++ .+++||++||..... ...+++++||+.++
T Consensus 122 ~~~--~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~ 199 (376)
T PRK14131 122 DTR--SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN 199 (376)
T ss_pred CCC--CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC
Confidence 753 377788898887 799999999975310 12478999999996
Q ss_pred CCceEEEeecCCCCC-CCcccEEEEECCcEEEEEccCCCC-CCCCeEEE--EECCCCCceEEEcccCCCCCC---C-ccc
Q 001895 212 RPRWHRVVVQGPGPG-PRYGHVMALVGQRYLMAIGGNDGK-RPLADVWA--LDTAAKPYEWRKLEPEGEGPP---P-CMY 283 (999)
Q Consensus 212 t~kW~~v~~~g~~P~-~R~~h~~~v~~~~~Lyv~GG~~g~-~~~ndv~~--yDl~s~~~~W~~v~~~~~~P~---~-r~~ 283 (999)
+|+.+. ++|. +|.+|+++++++ +|||+||.... ....++|. ||+.++ +|+.+.+++.++. + +..
T Consensus 200 --~W~~~~---~~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~--~W~~~~~~p~~~~~~~~~~~~ 271 (376)
T PRK14131 200 --QWKNAG---ESPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNL--KWQKLPDLPPAPGGSSQEGVA 271 (376)
T ss_pred --eeeECC---cCCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCc--ceeecCCCCCCCcCCcCCccc
Confidence 499876 7785 788999988887 89999997432 23455654 456677 9999987754321 1 123
Q ss_pred eEEEEEeCCEEEEEeccCCCCC----------------CcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEE
Q 001895 284 ATASARSDGLLLLCGGRDASSV----------------PLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLH 347 (999)
Q Consensus 284 ~~a~~~~~~~LyvfGG~~~~~~----------------~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~ 347 (999)
++.+++.+++|||+||.+.... ....+..|++.++ +|.....+ |.+|..++++.++++||
T Consensus 272 ~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~l-p~~r~~~~av~~~~~iy 347 (376)
T PRK14131 272 GAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG---KWQKVGEL-PQGLAYGVSVSWNNGVL 347 (376)
T ss_pred eEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC---cccccCcC-CCCccceEEEEeCCEEE
Confidence 3445667999999999863210 1123567887776 56666554 78999999999999999
Q ss_pred EEcCcCCCCCCcccCCeEEEEECCCCeEEE
Q 001895 348 VSGGALGGGRMVEDSSSVAVLDTAAGVWCD 377 (999)
Q Consensus 348 V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~ 377 (999)
|+||....+ ...++|++|+++.+.|+.
T Consensus 348 v~GG~~~~~---~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 348 LIGGETAGG---KAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEcCCCCCC---cEeeeEEEEEEcCCEEEE
Confidence 999986543 237899999999988875
No 44
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=3.8e-24 Score=253.73 Aligned_cols=204 Identities=18% Similarity=0.297 Sum_probs=172.2
Q ss_pred EEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEE
Q 001895 180 ATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWAL 259 (999)
Q Consensus 180 a~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~y 259 (999)
++.+++.||++||.+. ....+++++||+.++ +|..++ ++|.+|..++++++++ +||++||.++. +.+++|
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~--~W~~~~---~m~~~r~~~~~v~~~~-~iYviGG~~~~---~sve~y 336 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISN--NWIPIP---PMNSPRLYASGVPANN-KLYVVGGLPNP---TSVERW 336 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCC--EEEECC---CCCchhhcceEEEECC-EEEEECCcCCC---CceEEE
Confidence 4558999999999753 345678999999986 599998 8999999999999987 89999998642 679999
Q ss_pred ECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEE
Q 001895 260 DTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAA 339 (999)
Q Consensus 260 Dl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsa 339 (999)
|+.++ +|+.+++++. .+..++++..+++||++||.++. .+.+..|++.++ +|...+++ |.+|..|++
T Consensus 337 dp~~n--~W~~~~~l~~----~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~---~W~~~~~m-~~~r~~~~~ 403 (480)
T PHA02790 337 FHGDA--AWVNMPSLLK----PRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHD---QWQFGPST-YYPHYKSCA 403 (480)
T ss_pred ECCCC--eEEECCCCCC----CCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCC---EEEeCCCC-CCccccceE
Confidence 99999 9999988765 34455666779999999998643 356788999888 77777766 689999999
Q ss_pred EEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECCEEE
Q 001895 340 VFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIF 419 (999)
Q Consensus 340 v~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~Ly 419 (999)
++++++|||+||. +++||+++++|+.++++ +.+|..+++++++++||
T Consensus 404 ~~~~~~IYv~GG~------------~e~ydp~~~~W~~~~~m---------------------~~~r~~~~~~v~~~~IY 450 (480)
T PHA02790 404 LVFGRRLFLVGRN------------AEFYCESSNTWTLIDDP---------------------IYPRDNPELIIVDNKLL 450 (480)
T ss_pred EEECCEEEEECCc------------eEEecCCCCcEeEcCCC---------------------CCCccccEEEEECCEEE
Confidence 9999999999983 57899999999999887 66999999999999999
Q ss_pred EEcCCCCCcCcCcEEEeecc
Q 001895 420 IYGGLRGGVLLDDLLVAEDL 439 (999)
Q Consensus 420 V~GG~~~~~~l~Dv~~ld~~ 439 (999)
|+||+++...++.++++|..
T Consensus 451 viGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 451 LIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EECCcCCCcccceEEEEECC
Confidence 99998876667888888754
No 45
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=4.7e-25 Score=241.90 Aligned_cols=255 Identities=25% Similarity=0.372 Sum_probs=201.5
Q ss_pred eeecccCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCC
Q 001895 80 AVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT 159 (999)
Q Consensus 80 ~~~~~~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t 159 (999)
......|+.|.+-..|.++.. +.+||+|||...... +.||+|.+....
T Consensus 70 f~PavrGDiPpgcAA~Gfvcd------------GtrilvFGGMvEYGk--------------------YsNdLYELQasR 117 (830)
T KOG4152|consen 70 FAPAVRGDIPPGCAAFGFVCD------------GTRILVFGGMVEYGK--------------------YSNDLYELQASR 117 (830)
T ss_pred ecchhcCCCCCchhhcceEec------------CceEEEEccEeeecc--------------------ccchHHHhhhhh
Confidence 344567899999999999988 799999999987654 889999999888
Q ss_pred CcEEEecCC----CCCCCCCcCcEEEEeCCEEEEEcccCCC--------CCCcCcEEEEecCCC--CCceEEEeecCCCC
Q 001895 160 NKWSRITPF----GEPPTPRAAHVATAVGTMVVIQGGIGPA--------GLSAEDLHVLDLTQQ--RPRWHRVVVQGPGP 225 (999)
Q Consensus 160 ~~W~~l~~~----g~~P~pR~~hsa~~~g~~iyv~GG~~~~--------~~~~~dv~vyD~~t~--t~kW~~v~~~g~~P 225 (999)
-.|+++.+. |.+|.||.+|+..+++++.|+|||...+ ..+++|+|++++.-. ..-|....+.|..|
T Consensus 118 WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P 197 (830)
T KOG4152|consen 118 WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLP 197 (830)
T ss_pred hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCC
Confidence 899998654 5689999999999999999999996432 246899999998742 23599999999999
Q ss_pred CCCcccEEEEEC-----CcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEecc
Q 001895 226 GPRYGHVMALVG-----QRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGR 300 (999)
Q Consensus 226 ~~R~~h~~~v~~-----~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~ 300 (999)
.+|..|+++++. ..++||+||..|. .+.|+|.+|+++. +|.+..-.+..|.||.-|+++.+ +++||||||+
T Consensus 198 ~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl--~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfGGW 273 (830)
T KOG4152|consen 198 PPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTL--TWNKPSLSGVAPLPRSLHSATTI-GNKMYVFGGW 273 (830)
T ss_pred CCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEeccee--ecccccccCCCCCCcccccceee-cceeEEecce
Confidence 999999999981 2389999999874 5899999999988 99999999999999999988877 8999999996
Q ss_pred CCC-------------CCCcccEEEEecCCCCeEEEEECC----CCCCCCcceeEEEEECCEEEEEcCcCCCCCCc---c
Q 001895 301 DAS-------------SVPLASAYGLAKHRDGRWEWAIAP----GVSPSPRYQHAAVFVNARLHVSGGALGGGRMV---E 360 (999)
Q Consensus 301 ~~~-------------~~~~~d~~~~~~~~~~~W~w~~~~----g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~---~ 360 (999)
-.. -.+.+..-+++..+. .|+-.... ...|.+|.+|+++.++.+||+..|+++..... .
T Consensus 274 VPl~~~~~~~~~hekEWkCTssl~clNldt~-~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQV 352 (830)
T KOG4152|consen 274 VPLVMDDVKVATHEKEWKCTSSLACLNLDTM-AWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQV 352 (830)
T ss_pred eeeeccccccccccceeeeccceeeeeecch-heeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhcccc
Confidence 211 123334444444444 44433222 23689999999999999999999998643211 2
Q ss_pred cCCeEEEEECC
Q 001895 361 DSSSVAVLDTA 371 (999)
Q Consensus 361 ~~~~v~vyD~~ 371 (999)
+..|+|.+|.+
T Consensus 353 CCkDlWyLdTe 363 (830)
T KOG4152|consen 353 CCKDLWYLDTE 363 (830)
T ss_pred chhhhhhhccc
Confidence 34667777754
No 46
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.88 E-value=3.2e-22 Score=210.89 Aligned_cols=185 Identities=21% Similarity=0.354 Sum_probs=131.2
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcc--ceeEEEeccccCCCCChHHHHHHHHHhhhc---CCCCEEEecCCcccc
Q 001895 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIA--YIDYLFLGDYVDRGQHSLETITLLLALKVE---YPNNVHLIRGNHEAA 775 (999)
Q Consensus 701 ~vvGDiHG~~~~L~~il~~~g~~~~~~~~~--~~~~vfLGDyVDRG~~s~evl~ll~~lk~~---~P~~v~llrGNHE~~ 775 (999)
+||||||||+..|.++|+.+++......|. ...+||+|||||||+++.|||.+|++|+.+ .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 589999999999999999988643221111 227999999999999999999999999854 456899999999999
Q ss_pred chhhhcCChHH-HHHHhCCc--cchhhh---hhhhhhhcccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCC
Q 001895 776 DINALFGFRIE-CIERMGER--DGIWAW---HRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAG 849 (999)
Q Consensus 776 ~~~~~~gf~~e-~~~~~g~~--~~~~~~---~~~~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~ 849 (999)
.++..+.+... ....+... ....++ ..+.+++..||+...++ ++++||||++|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~~~-------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGLGP-------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCcHH--------------------
Confidence 98754433211 11111100 001122 34478899999998876 68899999922
Q ss_pred CceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHHHHHHHHcCCcEEEEeccccccceEEecCCeEEEEecc
Q 001895 850 SIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSA 924 (999)
Q Consensus 850 ~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa 924 (999)
+|+...-. +... ..-+.+.+.++|+.++.++||+||+.++.|...+++|++|+|...
T Consensus 140 -------~w~r~y~~-------~~~~----~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 140 -------LWYRGYSK-------ETSD----KECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred -------HHhhHhhh-------hhhh----ccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 33221100 0000 011236788999999999999999999988877899999999873
No 47
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.87 E-value=2.7e-22 Score=217.10 Aligned_cols=130 Identities=22% Similarity=0.369 Sum_probs=98.0
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCC---ccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCcccc
Q 001895 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGD---IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 775 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~---~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~ 775 (999)
++.||||||||++.|.++|+++++....+. ....++||||||||||++|+|||.+|++|. .+.++++||||||.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 589999999999999999999987421100 001279999999999999999999999885 346899999999998
Q ss_pred chhhhcCC-------hHHHHHHhCCc---cchhhhhhhhhhhcccceeEEEc-CcEEEecCCccCc
Q 001895 776 DINALFGF-------RIECIERMGER---DGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRS 830 (999)
Q Consensus 776 ~~~~~~gf-------~~e~~~~~g~~---~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHgGi~~~ 830 (999)
.++...+- ..+....|... ....+++.+.++|+.||++.+++ ++++|||||+.+.
T Consensus 80 ~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~ 145 (245)
T PRK13625 80 LYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQD 145 (245)
T ss_pred HHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChH
Confidence 87755331 11222333221 12346678899999999998774 6899999999876
No 48
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.83 E-value=7.4e-21 Score=204.83 Aligned_cols=129 Identities=24% Similarity=0.439 Sum_probs=98.8
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCC----CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCcc
Q 001895 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAG----DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHE 773 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~----~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE 773 (999)
.+|.||||||||+..|.++|+.+++...+. .....++||||||||||++|.|||.+|++|+.. .++++||||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcH
Confidence 379999999999999999999998764320 000127999999999999999999999998754 47999999999
Q ss_pred ccchhhhcC--------ChHHHHHHhCCccchhhhhhhhhhhcccceeEEEc-CcEEEecCCccCc
Q 001895 774 AADINALFG--------FRIECIERMGERDGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRS 830 (999)
Q Consensus 774 ~~~~~~~~g--------f~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHgGi~~~ 830 (999)
.+.++...+ +. +....|... ...+.+.+.++|+.||+...++ ++++|||||+++.
T Consensus 79 ~~l~~~~~~~~~~~~~~~~-~t~~~~~~~-~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~ 142 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLE-ETVAQLEAE-SEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEE 142 (234)
T ss_pred HHHHHHhcCCCccccCccc-chHHHHhhc-cHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChH
Confidence 988775433 22 222233221 2346678889999999998775 5799999998764
No 49
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.83 E-value=6e-21 Score=206.00 Aligned_cols=164 Identities=20% Similarity=0.332 Sum_probs=114.0
Q ss_pred eEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhh
Q 001895 700 IKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINA 779 (999)
Q Consensus 700 i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~ 779 (999)
++||||||||+..|.++|+++++.+..+ +++|||||||||++|+|||.+|++|+ .++++|+||||.+.+..
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D-----~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~ 71 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKD-----RLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAV 71 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCC-----EEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHH
Confidence 5899999999999999999998764332 89999999999999999999999986 58999999999998887
Q ss_pred hcCChHH----HHHHhCCccchhhhhhhhhhhcccceeEEEcC-cEEEecCCccCcccCHHHhhhccCCcc----cCCCC
Q 001895 780 LFGFRIE----CIERMGERDGIWAWHRINRLFNWLPLAALIEK-KIICMHGGIGRSINHVEQIENLQRPIT----MEAGS 850 (999)
Q Consensus 780 ~~gf~~e----~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~-~il~vHgGi~~~~~~~~~i~~i~rp~~----~~~~~ 850 (999)
.+|+... ....+- .....+.+.+++..+|+...+++ ++++|||||+|.. ++++...+.+.++ .+...
T Consensus 72 ~~g~~~~~~~~t~~~~l---~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w-~~~~~~~~a~eve~~l~~~~~~ 147 (257)
T cd07422 72 AAGIKKPKKKDTLDDIL---NAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQW-SIEQALKLAREVEAALRGPNYR 147 (257)
T ss_pred hcCccccccHhHHHHHH---hccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence 6664311 011110 01123567889999999988765 8999999999974 4444433333222 11111
Q ss_pred ceeeecccCCCCCCCCCCCCccCCCCCCceee
Q 001895 851 IVLMDLLWSDPTENDSVEGLRPNARGPGLVTF 882 (999)
Q Consensus 851 ~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~f 882 (999)
.++..+.|+.|.. |..+..|.....|
T Consensus 148 ~~~~~my~~~p~~------W~~~l~g~~r~r~ 173 (257)
T cd07422 148 EFLKNMYGNEPDR------WSDDLTGIDRLRY 173 (257)
T ss_pred HHHHHhhCCCCcc------cCcccCccHHHHH
Confidence 2344445545532 6666555543333
No 50
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.83 E-value=8.3e-20 Score=194.64 Aligned_cols=123 Identities=23% Similarity=0.294 Sum_probs=92.2
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCC--ccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchh
Q 001895 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGD--IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADIN 778 (999)
Q Consensus 701 ~vvGDiHG~~~~L~~il~~~g~~~~~~~--~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~ 778 (999)
+||||||||++.|.++|+.+++....+. ....++||||||||||++|.|||++|++++.. .++++|+||||.+.+.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcHHHHH
Confidence 6999999999999999999987532100 00118999999999999999999999998644 4899999999999876
Q ss_pred hhcCC-h----------------HHHHHHhCCccchhhhhhhhhhhcccceeEEEcCcEEEecCCcc
Q 001895 779 ALFGF-R----------------IECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIG 828 (999)
Q Consensus 779 ~~~gf-~----------------~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~ 828 (999)
...+. . .+..+.++. ....++.+.++|+.||+.... ++++|||||+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~lP~~~~~-~~~~~VHAg~~ 143 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFRE--HSEEHKDWLEWFKTLPLFLDL-GGVRVVHACWD 143 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhc--cchhHHHHHHHHhcCCcEEEE-CCEEEEECCcC
Confidence 43321 0 112222221 123567788999999999766 47999999985
No 51
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.82 E-value=1e-19 Score=198.49 Aligned_cols=121 Identities=21% Similarity=0.363 Sum_probs=95.8
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchh
Q 001895 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADIN 778 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~ 778 (999)
.++||||||||+..|.++|+++++.+..+ .++|||||||||++|+|||.+|+++ +.++++|+||||.+.+.
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D-----~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~ 72 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKD-----TLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLA 72 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCC-----EEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHH
Confidence 58999999999999999999998754322 7999999999999999999999987 35799999999999888
Q ss_pred hhcCChHH----HHHHhCCccchhhhhhhhhhhcccceeEEE-cCcEEEecCCccCcc
Q 001895 779 ALFGFRIE----CIERMGERDGIWAWHRINRLFNWLPLAALI-EKKIICMHGGIGRSI 831 (999)
Q Consensus 779 ~~~gf~~e----~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i-~~~il~vHgGi~~~~ 831 (999)
..+|+... ....+- .....+.+.++++.||+...+ ++++++|||||+|..
T Consensus 73 ~~~g~~~~~~~~~l~~~l---~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~ 127 (275)
T PRK00166 73 VAAGIKRNKKKDTLDPIL---EAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQW 127 (275)
T ss_pred hhcCCccccchhHHHHHH---ccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCC
Confidence 77765321 111110 112345677889999998776 568999999999874
No 52
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.81 E-value=6.5e-20 Score=197.65 Aligned_cols=127 Identities=24% Similarity=0.347 Sum_probs=100.7
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchh
Q 001895 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADIN 778 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~ 778 (999)
.++||||||||++.|.++|+++++.+..+ +++|||||||||++|+|||.+|.+++ .++++|+||||.+.+.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D-----~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~ 72 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQD-----TLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLA 72 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCC-----EEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHH
Confidence 58999999999999999999998765432 79999999999999999999999874 4688999999999998
Q ss_pred hhcCCh-----HHHHHHhCCccchhhhhhhhhhhcccceeEEEc-CcEEEecCCccCcccCHHHhhh
Q 001895 779 ALFGFR-----IECIERMGERDGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRSINHVEQIEN 839 (999)
Q Consensus 779 ~~~gf~-----~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHgGi~~~~~~~~~i~~ 839 (999)
..+|+. +.....+. ....+.+.+++..+|+....+ .++++|||||.|.. ++++...
T Consensus 73 ~~~g~~~~~~~d~l~~~l~----a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w-~l~~a~~ 134 (279)
T TIGR00668 73 VFAGISRNKPKDRLDPLLE----APDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQW-DLQTAKE 134 (279)
T ss_pred HhcCCCccCchHHHHHHHH----ccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCC-cHHHHHH
Confidence 887762 12222121 124467789999999997654 47999999999985 4555443
No 53
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.80 E-value=5.3e-19 Score=190.21 Aligned_cols=82 Identities=32% Similarity=0.479 Sum_probs=66.3
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCC-CEEEecCCccccch
Q 001895 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPN-NVHLIRGNHEAADI 777 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~-~v~llrGNHE~~~~ 777 (999)
.+++||||||+++.|.++|+.+.............+||||||||||++|.|||.+|++++..+|. .+++||||||.+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 58999999999999999998764321100011126999999999999999999999999999986 68999999998876
Q ss_pred hhh
Q 001895 778 NAL 780 (999)
Q Consensus 778 ~~~ 780 (999)
...
T Consensus 83 ~fL 85 (304)
T cd07421 83 AFL 85 (304)
T ss_pred hHh
Confidence 543
No 54
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.79 E-value=3.5e-19 Score=189.62 Aligned_cols=120 Identities=26% Similarity=0.336 Sum_probs=90.6
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccch
Q 001895 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (999)
++++||||||||+..|+++|+.+++.+..+ +++|||||||||++|.|||.+|.+ .++++||||||.+.+
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D-----~li~lGDlvDrGp~s~~vl~~l~~------~~~~~v~GNHE~~~l 85 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRD-----LLISVGDLIDRGPQSLRCLQLLEE------HWVRAVRGNHEQMAL 85 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccC-----EEEEcCcccCCCcCHHHHHHHHHc------CCceEeeCchHHHHH
Confidence 489999999999999999999998753322 799999999999999999999976 268899999999988
Q ss_pred hhhcCChHHHHHHhCCc-------cchhhhhhhhhhhcccceeEEE---cCcEEEecCCcc
Q 001895 778 NALFGFRIECIERMGER-------DGIWAWHRINRLFNWLPLAALI---EKKIICMHGGIG 828 (999)
Q Consensus 778 ~~~~gf~~e~~~~~g~~-------~~~~~~~~~~~~f~~LPlaa~i---~~~il~vHgGi~ 828 (999)
+...+-....+...|.. .....+..+.++++.||+...+ ++++++||||++
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 76533211122222211 1122345666889999999765 357999999984
No 55
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.78 E-value=9.3e-19 Score=185.08 Aligned_cols=147 Identities=26% Similarity=0.333 Sum_probs=105.4
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccch
Q 001895 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (999)
++|+|||||||++..|.++++.+++....+ .++|+|||||||+++.||+.+|.. ..+++||||||.+.+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d-----~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~ 69 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARD-----RLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAI 69 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCC-----EEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHH
Confidence 468999999999999999999987643221 799999999999999999999876 368999999999988
Q ss_pred hhhcC--ChHHHHHHhCCccc-----hhhhhhhhhhhcccceeEEEc---CcEEEecCCccCcccCHHHhhhccCCcccC
Q 001895 778 NALFG--FRIECIERMGERDG-----IWAWHRINRLFNWLPLAALIE---KKIICMHGGIGRSINHVEQIENLQRPITME 847 (999)
Q Consensus 778 ~~~~g--f~~e~~~~~g~~~~-----~~~~~~~~~~f~~LPlaa~i~---~~il~vHgGi~~~~~~~~~i~~i~rp~~~~ 847 (999)
....+ +..+.+.+++.... ..+++.+.++|+.||+...++ .+++|||||+.+... ...+.. .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~-~~~~~~--~~~~-- 144 (207)
T cd07424 70 DALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDW-SDGVGA--VTLR-- 144 (207)
T ss_pred hHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchh-hhhhhc--cccC--
Confidence 87655 33445454443311 114456788999999998764 479999999965421 111110 1111
Q ss_pred CCCceeeecccCCCC
Q 001895 848 AGSIVLMDLLWSDPT 862 (999)
Q Consensus 848 ~~~~~~~dllWsDP~ 862 (999)
.....+++|+++.
T Consensus 145 --~~~~~~~~w~~~~ 157 (207)
T cd07424 145 --PEDIEELLWSRTR 157 (207)
T ss_pred --cccceeeeeccch
Confidence 1246678998765
No 56
>PHA02239 putative protein phosphatase
Probab=99.76 E-value=4.1e-18 Score=182.34 Aligned_cols=124 Identities=25% Similarity=0.371 Sum_probs=91.9
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCC--CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccc
Q 001895 699 PIKIFGDLHGQFGDLMRLFDEYGSP--STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 776 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L~~il~~~g~~--~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~ 776 (999)
++++||||||++..|.++++.+... +.+ .+||||||||||++|.||+.+|++++. .+.++++|+||||.+.
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d------~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~ 74 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEE------TIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEF 74 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCC------EEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHH
Confidence 5899999999999999999988532 222 799999999999999999999999754 3568999999999987
Q ss_pred hhhhcCC-----h---------HHHHHHhCCccc---------------------------hhhhhhhhhhhcccceeEE
Q 001895 777 INALFGF-----R---------IECIERMGERDG---------------------------IWAWHRINRLFNWLPLAAL 815 (999)
Q Consensus 777 ~~~~~gf-----~---------~e~~~~~g~~~~---------------------------~~~~~~~~~~f~~LPlaa~ 815 (999)
++...+. . .+....||-... ...+..+..+++.||+...
T Consensus 75 l~~~~~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~ 154 (235)
T PHA02239 75 YNIMENVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYK 154 (235)
T ss_pred HHHHhCchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEE
Confidence 6543211 1 122344432110 0123455568889999977
Q ss_pred EcCcEEEecCCccCc
Q 001895 816 IEKKIICMHGGIGRS 830 (999)
Q Consensus 816 i~~~il~vHgGi~~~ 830 (999)
.+ +++|||||+.|.
T Consensus 155 ~~-~~ifVHAGi~p~ 168 (235)
T PHA02239 155 ED-KYIFSHSGGVSW 168 (235)
T ss_pred EC-CEEEEeCCCCCC
Confidence 65 799999999875
No 57
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.72 E-value=9.7e-18 Score=178.31 Aligned_cols=120 Identities=23% Similarity=0.244 Sum_probs=87.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccch
Q 001895 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (999)
+++.||||||||+..|+++|+.+.+....+ .++|||||||||++|.|||.+|.+ .+++.||||||.+.+
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d-----~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~ 83 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETD-----LLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMAL 83 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCC-----EEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHH
Confidence 489999999999999999999987543322 789999999999999999999864 378999999999988
Q ss_pred hhhcCChHHHHHHhCCcc-------chhhhhhhhhhhcccceeEEEc---CcEEEecCCcc
Q 001895 778 NALFGFRIECIERMGERD-------GIWAWHRINRLFNWLPLAALIE---KKIICMHGGIG 828 (999)
Q Consensus 778 ~~~~gf~~e~~~~~g~~~-------~~~~~~~~~~~f~~LPlaa~i~---~~il~vHgGi~ 828 (999)
.....-....+...|... .......+..+++.||+...+. .++++||||++
T Consensus 84 ~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 84 DAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 654321111121111110 0112234456889999997663 47899999984
No 58
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.70 E-value=1.1e-15 Score=164.59 Aligned_cols=281 Identities=19% Similarity=0.217 Sum_probs=210.5
Q ss_pred cCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCC--CcE
Q 001895 85 KEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT--NKW 162 (999)
Q Consensus 85 ~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t--~~W 162 (999)
..+.|.+--.-+-..+ ++.+||-=|. .-...|.+|+.. ..|
T Consensus 30 lPdlPvg~KnG~Ga~i------------g~~~YVGLGs-------------------------~G~afy~ldL~~~~k~W 72 (381)
T COG3055 30 LPDLPVGFKNGAGALI------------GDTVYVGLGS-------------------------AGTAFYVLDLKKPGKGW 72 (381)
T ss_pred CCCCCcccccccccee------------cceEEEEecc-------------------------CCccceehhhhcCCCCc
Confidence 3455666555555555 6788887774 233677888875 579
Q ss_pred EEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCC----CcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECC
Q 001895 163 SRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGL----SAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQ 238 (999)
Q Consensus 163 ~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~----~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~ 238 (999)
++++.. +-.+|.+..+++++++||+|||.+.... ..+|+|+||+.+++ |+++.+. .|....+|+++.+++
T Consensus 73 ~~~a~F--pG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ns--W~kl~t~--sP~gl~G~~~~~~~~ 146 (381)
T COG3055 73 TKIADF--PGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNS--WHKLDTR--SPTGLVGASTFSLNG 146 (381)
T ss_pred eEcccC--CCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCCh--hheeccc--cccccccceeEecCC
Confidence 999987 4578999999999999999999864433 46899999999975 9999854 477789999999998
Q ss_pred cEEEEEccCC----------------------------------CCCCCCeEEEEECCCCCceEEEcccCCCCCCCccce
Q 001895 239 RYLMAIGGND----------------------------------GKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYA 284 (999)
Q Consensus 239 ~~Lyv~GG~~----------------------------------g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~ 284 (999)
..+|++||.+ .......++.||+.++ +|+.+...+. -..+.
T Consensus 147 ~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n--~W~~~G~~pf---~~~aG 221 (381)
T COG3055 147 TKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN--QWRNLGENPF---YGNAG 221 (381)
T ss_pred ceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--hhhhcCcCcc---cCccC
Confidence 8999999963 1112557999999999 9998764433 24666
Q ss_pred EEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCC------CcceeEEEEECCEEEEEcCcCCCC--
Q 001895 285 TASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPS------PRYQHAAVFVNARLHVSGGALGGG-- 356 (999)
Q Consensus 285 ~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~------~R~~hsav~~~~~L~V~GG~~~~~-- 356 (999)
++++..++++.++-|+-..+.+...++.++...+ .-+|......+++ ...++-.-..++.++|.||.+..+
T Consensus 222 sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~-~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~ 300 (381)
T COG3055 222 SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGD-NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGAL 300 (381)
T ss_pred cceeecCCeEEEEcceecCCccccceeEEEeccC-ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHH
Confidence 7888889999999999888877888888877644 4566666544322 223333344578999999964321
Q ss_pred -------------CCcccCCeEEEEECCCCeEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECCEEEEEcC
Q 001895 357 -------------RMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGG 423 (999)
Q Consensus 357 -------------~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG 423 (999)
..-...++||+|| .+.|..+..+ |.++++..++..++.||++||
T Consensus 301 ~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeL---------------------p~~l~YG~s~~~nn~vl~IGG 357 (381)
T COG3055 301 KAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGEL---------------------PQGLAYGVSLSYNNKVLLIGG 357 (381)
T ss_pred HHHHhcccccccchhhhhhceEEEEc--CCceeeeccc---------------------CCCccceEEEecCCcEEEEcc
Confidence 1112367899998 9999999888 678999999999999999999
Q ss_pred C-CCCcCcCcEEEee
Q 001895 424 L-RGGVLLDDLLVAE 437 (999)
Q Consensus 424 ~-~~~~~l~Dv~~ld 437 (999)
- +++..+.+++.+-
T Consensus 358 E~~~Gka~~~v~~l~ 372 (381)
T COG3055 358 ETSGGKATTRVYSLS 372 (381)
T ss_pred ccCCCeeeeeEEEEE
Confidence 4 4668888888764
No 59
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.51 E-value=4e-15 Score=164.45 Aligned_cols=317 Identities=17% Similarity=0.260 Sum_probs=208.7
Q ss_pred CCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEe
Q 001895 86 EDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRI 165 (999)
Q Consensus 86 ~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l 165 (999)
...|.-|.||.++.... .+.||++||.++.. .+.|+|.|....+.|..+
T Consensus 255 ~~~p~~RgGHQMV~~~~----------~~CiYLYGGWdG~~---------------------~l~DFW~Y~v~e~~W~~i 303 (723)
T KOG2437|consen 255 DNRPGMRGGHQMVIDVQ----------TECVYLYGGWDGTQ---------------------DLADFWAYSVKENQWTCI 303 (723)
T ss_pred ccCccccCcceEEEeCC----------CcEEEEecCcccch---------------------hHHHHHhhcCCcceeEEe
Confidence 46899999999999853 56999999998876 788999999999999999
Q ss_pred cCCCCCCCCCcCcEEEEeCC--EEEEEcccCCCC-----CCcCcEEEEecCCCCCceEEEeec---CCCCCCCcccEEEE
Q 001895 166 TPFGEPPTPRAAHVATAVGT--MVVIQGGIGPAG-----LSAEDLHVLDLTQQRPRWHRVVVQ---GPGPGPRYGHVMAL 235 (999)
Q Consensus 166 ~~~g~~P~pR~~hsa~~~g~--~iyv~GG~~~~~-----~~~~dv~vyD~~t~t~kW~~v~~~---g~~P~~R~~h~~~v 235 (999)
...+..|..|..|-++.... ++|+.|-+-+.. ..-.|+|+||+++++ |+.+.-. ...|..-+.|.|++
T Consensus 304 N~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~--W~~ls~dt~~dGGP~~vfDHqM~V 381 (723)
T KOG2437|consen 304 NRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT--WMLLSEDTAADGGPKLVFDHQMCV 381 (723)
T ss_pred ecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCce--eEEecccccccCCcceeecceeeE
Confidence 98888999999999999876 999999864332 234799999999976 9887632 23688999999999
Q ss_pred ECCc-EEEEEccCCC--C-CCCCeEEEEECCCCCceEEEcccCCCC-------CCCccceEEE-EEeCCEEEEEeccCCC
Q 001895 236 VGQR-YLMAIGGNDG--K-RPLADVWALDTAAKPYEWRKLEPEGEG-------PPPCMYATAS-ARSDGLLLLCGGRDAS 303 (999)
Q Consensus 236 ~~~~-~Lyv~GG~~g--~-~~~ndv~~yDl~s~~~~W~~v~~~~~~-------P~~r~~~~a~-~~~~~~LyvfGG~~~~ 303 (999)
.++. .+|||||..- . ..+.-++.||+... .|..+...... -..|.+|.+- ...+.++|+|||....
T Consensus 382 d~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~--~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 382 DSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQ--TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred ecCcceEEEecCeeccCCCccccceEEEecCCc--cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 9872 3999999842 2 34788999999998 89876432210 1113333332 2345789999997554
Q ss_pred CCCcccEEEEecCCCCeEE----EEECCCCCCCCcceeEEEEE---CCEEEEEcCcCCCCCC--cccCCeEEEEECCCCe
Q 001895 304 SVPLASAYGLAKHRDGRWE----WAIAPGVSPSPRYQHAAVFV---NARLHVSGGALGGGRM--VEDSSSVAVLDTAAGV 374 (999)
Q Consensus 304 ~~~~~d~~~~~~~~~~~W~----w~~~~g~~P~~R~~hsav~~---~~~L~V~GG~~~~~~~--~~~~~~v~vyD~~t~~ 374 (999)
. .++-.+.|+....+.=. -.....+.|.+-.. .-++. ...|++.-|......- ....+++|+|+..+..
T Consensus 460 ~-El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~-qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~ 537 (723)
T KOG2437|consen 460 T-ELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFT-QRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNS 537 (723)
T ss_pred e-EEeehhcceeccccchhhhccCcCccccCCCcchh-hhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccc
Confidence 3 23334444332110000 00011222322111 11222 3578888787532211 1236889999999999
Q ss_pred EEEcccCcCCCCCCCcccccC---CCCCccCCCCcceeEEEEE--CCEEEEEcCCCCC-----cCcCcEEEeecc
Q 001895 375 WCDTKSVVTSPRTGRYSADAA---GGDAAVELTRRCRHAAAAV--GDLIFIYGGLRGG-----VLLDDLLVAEDL 439 (999)
Q Consensus 375 W~~v~~~~~~p~~~~~~~~~~---~~~~~~~p~~R~~hsa~~~--~~~LyV~GG~~~~-----~~l~Dv~~ld~~ 439 (999)
|..+.....-.........+. .-+....+.+|+.|+.++. ..-+|.+||..+. ..++|.|.++.-
T Consensus 538 w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~ 612 (723)
T KOG2437|consen 538 WSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKIC 612 (723)
T ss_pred hhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhc
Confidence 998765421100000000000 1122345888998887654 5678999997643 457888887654
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.43 E-value=6.6e-12 Score=135.87 Aligned_cols=236 Identities=21% Similarity=0.327 Sum_probs=165.6
Q ss_pred CCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEecC
Q 001895 88 GPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITP 167 (999)
Q Consensus 88 ~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l~~ 167 (999)
+-.+|-+.+++.+ +++||||||....... ....++|+|+||+.+++|.++..
T Consensus 79 pG~~rnqa~~a~~------------~~kLyvFgG~Gk~~~~----------------~~~~~nd~Y~y~p~~nsW~kl~t 130 (381)
T COG3055 79 PGGARNQAVAAVI------------GGKLYVFGGYGKSVSS----------------SPQVFNDAYRYDPSTNSWHKLDT 130 (381)
T ss_pred CCcccccchheee------------CCeEEEeeccccCCCC----------------CceEeeeeEEecCCCChhheecc
Confidence 3467888888888 7999999998765531 11289999999999999999998
Q ss_pred CCCCCCCCcCcEEEEeCC-EEEEEcccCCC---------------------------------CCCcCcEEEEecCCCCC
Q 001895 168 FGEPPTPRAAHVATAVGT-MVVIQGGIGPA---------------------------------GLSAEDLHVLDLTQQRP 213 (999)
Q Consensus 168 ~g~~P~pR~~hsa~~~g~-~iyv~GG~~~~---------------------------------~~~~~dv~vyD~~t~t~ 213 (999)
. .|....+|+++.+++ +||++||.+.. ......++.||+.++
T Consensus 131 ~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n-- 206 (381)
T COG3055 131 R--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN-- 206 (381)
T ss_pred c--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--
Confidence 7 477789999999988 99999996421 011467888999886
Q ss_pred ceEEEeecCCCC-CCCcccEEEEECCcEEEEEccC-CCCCCCCeEEEEECCCCCceEEEcccCCCCCCCc---cceEEEE
Q 001895 214 RWHRVVVQGPGP-GPRYGHVMALVGQRYLMAIGGN-DGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPC---MYATASA 288 (999)
Q Consensus 214 kW~~v~~~g~~P-~~R~~h~~~v~~~~~Lyv~GG~-~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r---~~~~a~~ 288 (999)
+|..+- ..| .++++++. +..++++.++-|. -..-+...+++++...+..+|..+...+.+.... .......
T Consensus 207 ~W~~~G---~~pf~~~aGsa~-~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G 282 (381)
T COG3055 207 QWRNLG---ENPFYGNAGSAV-VIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSG 282 (381)
T ss_pred hhhhcC---cCcccCccCcce-eecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccc
Confidence 498774 455 57777555 4455577777775 3334567888999987777999996665432222 2222334
Q ss_pred EeCCEEEEEeccCCC------------------CCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEc
Q 001895 289 RSDGLLLLCGGRDAS------------------SVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSG 350 (999)
Q Consensus 289 ~~~~~LyvfGG~~~~------------------~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~G 350 (999)
..++.+++.||..-. ..-..++|.|+ ++.|+ .+ +..|.++....++..++.||++|
T Consensus 283 ~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d---~g~Wk--~~-GeLp~~l~YG~s~~~nn~vl~IG 356 (381)
T COG3055 283 KSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD---NGSWK--IV-GELPQGLAYGVSLSYNNKVLLIG 356 (381)
T ss_pred eeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc---CCcee--ee-cccCCCccceEEEecCCcEEEEc
Confidence 557888998984211 11235677776 34554 33 44577888888888999999999
Q ss_pred CcCCCCCCcccCCeEEEE
Q 001895 351 GALGGGRMVEDSSSVAVL 368 (999)
Q Consensus 351 G~~~~~~~~~~~~~v~vy 368 (999)
|.+..+.. ...|+.+
T Consensus 357 GE~~~Gka---~~~v~~l 371 (381)
T COG3055 357 GETSGGKA---TTRVYSL 371 (381)
T ss_pred cccCCCee---eeeEEEE
Confidence 99877653 3445444
No 61
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.24 E-value=3.4e-12 Score=141.66 Aligned_cols=210 Identities=20% Similarity=0.353 Sum_probs=156.1
Q ss_pred CCceEEEeecC-------CCCCCCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccc
Q 001895 212 RPRWHRVVVQG-------PGPGPRYGHVMALVG-QRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMY 283 (999)
Q Consensus 212 t~kW~~v~~~g-------~~P~~R~~h~~~v~~-~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~ 283 (999)
+.+|++++... ..|..|.+|-|+.-. ++++|+.||++|...+.|+|.|+...+ .|+.+......|..|.+
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKEN--QWTCINRDTEGPGARSC 315 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcc--eeEEeecCCCCCcchhh
Confidence 46799988654 578999999998764 359999999999999999999999999 99999998888999999
Q ss_pred eEEEEE-eCCEEEEEeccCCCC-----CCcccEEEEecCCCCeEEEEECCC---CCCCCcceeEEEEECCE--EEEEcCc
Q 001895 284 ATASAR-SDGLLLLCGGRDASS-----VPLASAYGLAKHRDGRWEWAIAPG---VSPSPRYQHAAVFVNAR--LHVSGGA 352 (999)
Q Consensus 284 ~~a~~~-~~~~LyvfGG~~~~~-----~~~~d~~~~~~~~~~~W~w~~~~g---~~P~~R~~hsav~~~~~--L~V~GG~ 352 (999)
|-++.- ...+||+.|-.-+.. ..-.|.|.||..++ .|....... --|..-+.|.+++.+.+ +||+||.
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~-~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN-TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc-eeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 888764 346999998753322 24578999999887 554443321 12677899999999887 9999998
Q ss_pred CCCCCCcccCCeEEEEECCCCeEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEE--CCEEEEEcCCCCCcCc
Q 001895 353 LGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAV--GDLIFIYGGLRGGVLL 430 (999)
Q Consensus 353 ~~~~~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~--~~~LyV~GG~~~~~~l 430 (999)
..... ......+|.||+....|..+..--+ .-+...+.-..|-+|++-.. +..+|+|||.+....+
T Consensus 395 ~~~~~-e~~f~GLYaf~~~~~~w~~l~e~~~-----------~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El 462 (723)
T KOG2437|consen 395 ILTCN-EPQFSGLYAFNCQCQTWKLLREDSC-----------NAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTEL 462 (723)
T ss_pred eccCC-CccccceEEEecCCccHHHHHHHHh-----------hcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEE
Confidence 64332 1226789999999999998765411 11112233467888887665 6689999997766544
Q ss_pred CcEEEe
Q 001895 431 DDLLVA 436 (999)
Q Consensus 431 ~Dv~~l 436 (999)
+=...+
T Consensus 463 ~L~f~y 468 (723)
T KOG2437|consen 463 NLFFSY 468 (723)
T ss_pred eehhcc
Confidence 444333
No 62
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.97 E-value=3.6e-09 Score=105.89 Aligned_cols=78 Identities=29% Similarity=0.399 Sum_probs=57.2
Q ss_pred CeEEEecCCCCHHHH---HHHH-HHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHH--HHhhhcCCCCEEEecCCc
Q 001895 699 PIKIFGDLHGQFGDL---MRLF-DEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLL--LALKVEYPNNVHLIRGNH 772 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L---~~il-~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll--~~lk~~~P~~v~llrGNH 772 (999)
+|++|||+|+..... .+.+ ........+ -+|++||++|+|..+.+..... +..+...+..+++++|||
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPD------FIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTS------EEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCC------EEEeeccccccccccccchhhhccchhhhhcccccccccccc
Confidence 589999999999987 3333 332222222 6899999999999988887765 555566677999999999
Q ss_pred cccchhhhcC
Q 001895 773 EAADINALFG 782 (999)
Q Consensus 773 E~~~~~~~~g 782 (999)
|.......+.
T Consensus 76 D~~~~~~~~~ 85 (200)
T PF00149_consen 76 DYYSGNSFYG 85 (200)
T ss_dssp SSHHHHHHHH
T ss_pred ccceeccccc
Confidence 9987665443
No 63
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.81 E-value=7.8e-09 Score=102.27 Aligned_cols=147 Identities=35% Similarity=0.484 Sum_probs=118.7
Q ss_pred chhhhcCChHHHHHHhCCccchhhhhh---hhhhhcccceeEEEcC-cEEEecCCccCcc-cCHHHhhhccCCc--ccCC
Q 001895 776 DINALFGFRIECIERMGERDGIWAWHR---INRLFNWLPLAALIEK-KIICMHGGIGRSI-NHVEQIENLQRPI--TMEA 848 (999)
Q Consensus 776 ~~~~~~gf~~e~~~~~g~~~~~~~~~~---~~~~f~~LPlaa~i~~-~il~vHgGi~~~~-~~~~~i~~i~rp~--~~~~ 848 (999)
.+...+|+.++|...++.. ..|.. +.++|+.||+.+++++ .++|.|+++++.+ ..+++++.+.|.. .+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~---~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 78 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEE---LEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPH 78 (155)
T ss_pred hhhhhhchhHHhhhhcCCc---eeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCC
Confidence 4566788888888877653 34655 9999999999999988 9999999999976 6778888877765 3333
Q ss_pred CCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHHHHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccC
Q 001895 849 GSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYC 928 (999)
Q Consensus 849 ~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~ 928 (999)
.+ ...+.+|+++... ....|.+..||.+. .| .+....|+..+....+.|+|+.+..++....++..+|+|++++||
T Consensus 79 ~g-~~~~~~~~~~~~~-~~~~w~~~~~g~~~-~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 79 AG-HTHDLLWSDPDGG-DRRIWNPGPRGVPR-DG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred cc-ccccccCCCCCCC-cccccccCCCCCCc-cc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 33 5666699998752 25779999999983 34 688889998898888999999999999988777899999999997
Q ss_pred C
Q 001895 929 G 929 (999)
Q Consensus 929 ~ 929 (999)
.
T Consensus 155 ~ 155 (155)
T COG0639 155 Y 155 (155)
T ss_pred C
Confidence 3
No 64
>PLN02772 guanylate kinase
Probab=98.75 E-value=5.1e-08 Score=110.19 Aligned_cols=92 Identities=17% Similarity=0.315 Sum_probs=78.7
Q ss_pred ccCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEE
Q 001895 84 KKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWS 163 (999)
Q Consensus 84 ~~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~ 163 (999)
+.|-.+.||.+||++.+ ++++|||||.+.... ..+++|+||..|.+|.
T Consensus 17 ~~~~~~~~~~~~tav~i------------gdk~yv~GG~~d~~~--------------------~~~~v~i~D~~t~~W~ 64 (398)
T PLN02772 17 TNGFGVKPKNRETSVTI------------GDKTYVIGGNHEGNT--------------------LSIGVQILDKITNNWV 64 (398)
T ss_pred ccCccCCCCCcceeEEE------------CCEEEEEcccCCCcc--------------------ccceEEEEECCCCcEe
Confidence 34456779999999999 799999999876432 6789999999999999
Q ss_pred EecCCCCCCCCCcCcEEEEeC-CEEEEEcccCCCCCCcCcEEEEecCC
Q 001895 164 RITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQ 210 (999)
Q Consensus 164 ~l~~~g~~P~pR~~hsa~~~g-~~iyv~GG~~~~~~~~~dv~vyD~~t 210 (999)
.....|.+|.||.+|++++++ ++|+|+++..+. .+++|.+.+++
T Consensus 65 ~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---~~~~w~l~~~t 109 (398)
T PLN02772 65 SPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---DDSIWFLEVDT 109 (398)
T ss_pred cccccCCCCCCCCcceEEEECCceEEEEeCCCCC---ccceEEEEcCC
Confidence 999999999999999999996 599999875433 48999999887
No 65
>PF13964 Kelch_6: Kelch motif
Probab=98.71 E-value=3.5e-08 Score=79.47 Aligned_cols=50 Identities=42% Similarity=0.823 Sum_probs=44.0
Q ss_pred CCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEecCCCC
Q 001895 91 PRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGE 170 (999)
Q Consensus 91 pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l~~~g~ 170 (999)
||.+|+++++ +++||||||...... .++++++||+.+++|+.++++
T Consensus 1 pR~~~s~v~~------------~~~iyv~GG~~~~~~--------------------~~~~v~~yd~~t~~W~~~~~m-- 46 (50)
T PF13964_consen 1 PRYGHSAVVV------------GGKIYVFGGYDNSGK--------------------YSNDVERYDPETNTWEQLPPM-- 46 (50)
T ss_pred CCccCEEEEE------------CCEEEEECCCCCCCC--------------------ccccEEEEcCCCCcEEECCCC--
Confidence 7999999999 789999999987421 889999999999999999877
Q ss_pred CCCCC
Q 001895 171 PPTPR 175 (999)
Q Consensus 171 ~P~pR 175 (999)
|.||
T Consensus 47 -p~pR 50 (50)
T PF13964_consen 47 -PTPR 50 (50)
T ss_pred -CCCC
Confidence 6776
No 66
>PF13964 Kelch_6: Kelch motif
Probab=98.71 E-value=3e-08 Score=79.81 Aligned_cols=50 Identities=32% Similarity=0.615 Sum_probs=45.5
Q ss_pred CCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCC
Q 001895 174 PRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (999)
Q Consensus 174 pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R 228 (999)
||.+|++++++++|||+||........+++++||+.+++ |+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNT--WEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCc--EEECC---CCCCCC
Confidence 699999999999999999997767788999999999964 99998 899887
No 67
>PLN02772 guanylate kinase
Probab=98.70 E-value=6.5e-08 Score=109.35 Aligned_cols=89 Identities=18% Similarity=0.412 Sum_probs=78.8
Q ss_pred CCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCC
Q 001895 172 PTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKR 251 (999)
Q Consensus 172 P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~ 251 (999)
+.|+..|+++++++++||+||.++.+...+++|+||..+.+ |..+.+.|..|.+|.+|++|++++.+|+|+++..+..
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~--W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~ 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNN--WVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCc--EecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc
Confidence 56899999999999999999988766578999999999964 9999999999999999999999888999998765543
Q ss_pred CCCeEEEEECCCC
Q 001895 252 PLADVWALDTAAK 264 (999)
Q Consensus 252 ~~ndv~~yDl~s~ 264 (999)
.++|.+.+.|.
T Consensus 100 --~~~w~l~~~t~ 110 (398)
T PLN02772 100 --DSIWFLEVDTP 110 (398)
T ss_pred --cceEEEEcCCH
Confidence 78999988774
No 68
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.64 E-value=6.8e-08 Score=77.45 Aligned_cols=49 Identities=43% Similarity=0.814 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEe
Q 001895 113 GPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV 183 (999)
Q Consensus 113 ~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~ 183 (999)
+++||||||....... .++|+|+||+.+++|+++ ++.|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~-------------------~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGT-------------------RLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCC-------------------EecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 4789999999842221 889999999999999999 446999999999974
No 69
>PRK09453 phosphodiesterase; Provisional
Probab=98.61 E-value=1.3e-07 Score=98.01 Aligned_cols=68 Identities=19% Similarity=0.331 Sum_probs=53.2
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCC--------hHHHHHHHHHhhhcCCCCEEEecC
Q 001895 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH--------SLETITLLLALKVEYPNNVHLIRG 770 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~--------s~evl~ll~~lk~~~P~~v~llrG 770 (999)
+|.|++|+||++..|.++++.+.....+ .++++||++|+|+. ..|++.+|..+ ...+++++|
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~~~~~~~d------~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~G 71 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALELFAQSGAD------WLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRG 71 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhcCCC------EEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEcc
Confidence 6899999999999999999887433333 79999999999873 45677766544 246999999
Q ss_pred Cccccc
Q 001895 771 NHEAAD 776 (999)
Q Consensus 771 NHE~~~ 776 (999)
|||...
T Consensus 72 NhD~~~ 77 (182)
T PRK09453 72 NCDSEV 77 (182)
T ss_pred CCcchh
Confidence 999743
No 70
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.56 E-value=1e-06 Score=88.26 Aligned_cols=60 Identities=30% Similarity=0.498 Sum_probs=44.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccc
Q 001895 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 776 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~ 776 (999)
+|.++||+|++...+.++++.+.- .+ .+|++||++|+ .+++.++..+ .+++++||||...
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~~--~d------~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYINE--PD------FVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHTT--ES------EEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTH
T ss_pred EEEEEeCCCCChhHHHHHHHHhcC--CC------EEEECCCchhH----HHHHHHHhcC------CEEEEeCCccccc
Confidence 689999999999999999999832 22 68889999993 7777777555 6999999999643
No 71
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.50 E-value=3.3e-07 Score=92.21 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=47.9
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCcccc
Q 001895 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 775 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~ 775 (999)
+|.+++|+||++..+.++++.+.. .+ .++++||+++++.... ++. ...+++++||||..
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d------~ii~~GD~~~~~~~~~--------~~~--~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VD------LIIHAGDVLYPGPLNE--------LEL--KAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CC------EEEECCccccccccch--------hhc--CCcEEEEeCCCCCc
Confidence 478999999999999999998754 22 7899999999998755 122 24699999999984
No 72
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.45 E-value=3.3e-07 Score=73.49 Aligned_cols=48 Identities=33% Similarity=0.704 Sum_probs=41.9
Q ss_pred CCEEEEEcccC-CCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEE
Q 001895 184 GTMVVIQGGIG-PAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV 236 (999)
Q Consensus 184 g~~iyv~GG~~-~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~ 236 (999)
|++||||||.+ .....++|+|+||+.+. +|+++ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~--~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTN--TWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCC--EEEEC---CCCCCCccceEEEEC
Confidence 57999999998 46777899999999886 59988 589999999999864
No 73
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.45 E-value=1.8e-07 Score=74.97 Aligned_cols=47 Identities=28% Similarity=0.678 Sum_probs=30.6
Q ss_pred CCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEecCC
Q 001895 91 PRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPF 168 (999)
Q Consensus 91 pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l~~~ 168 (999)
||++|+++.+. +++||||||...... .++|+|+||+.+++|+++.++
T Consensus 1 pR~~h~~~~~~-----------~~~i~v~GG~~~~~~--------------------~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIG-----------DNSIYVFGGRDSSGS--------------------PLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE------------TTEEEEE--EEE-TE--------------------E---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEe-----------CCeEEEECCCCCCCc--------------------ccCCEEEEECCCCEEEECCCC
Confidence 79999999984 479999999876532 899999999999999999544
No 74
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.44 E-value=5.4e-07 Score=72.21 Aligned_cols=47 Identities=34% Similarity=0.620 Sum_probs=39.8
Q ss_pred CcceeEEEEECCEEEEEcCc-CCCCCCcccCCeEEEEECCCCeEEEcccC
Q 001895 333 PRYQHAAVFVNARLHVSGGA-LGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (999)
Q Consensus 333 ~R~~hsav~~~~~L~V~GG~-~~~~~~~~~~~~v~vyD~~t~~W~~v~~~ 381 (999)
+|+.|++++++++|||+||+ .... ....+++++||+++.+|+.+..+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~--~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNG--GSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCC--CcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 2111 23489999999999999998876
No 75
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.42 E-value=2.2e-07 Score=74.43 Aligned_cols=46 Identities=35% Similarity=0.850 Sum_probs=30.5
Q ss_pred CCcccEEEEECCcEEEEEccCCCC-CCCCeEEEEECCCCCceEEEcccC
Q 001895 227 PRYGHVMALVGQRYLMAIGGNDGK-RPLADVWALDTAAKPYEWRKLEPE 274 (999)
Q Consensus 227 ~R~~h~~~v~~~~~Lyv~GG~~g~-~~~ndv~~yDl~s~~~~W~~v~~~ 274 (999)
||++|+++.+++++||||||.+.. ..++|+|+||+.++ +|+++.++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECCCC
Confidence 699999999975699999999876 58999999999999 99999443
No 76
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.42 E-value=1.3e-06 Score=85.83 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=77.5
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChH--HHHHHHHHhhhcCCCCEEEecCCccccc
Q 001895 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL--ETITLLLALKVEYPNNVHLIRGNHEAAD 776 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~--evl~ll~~lk~~~P~~v~llrGNHE~~~ 776 (999)
+|.+++|+||++. .+ .....+ .+|++||++++|.... +.+.++..++ .| .++++.||||...
T Consensus 1 ~i~~isD~H~~~~----~~---~~~~~D------~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~~ 64 (135)
T cd07379 1 RFVCISDTHSRHR----TI---SIPDGD------VLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLTL 64 (135)
T ss_pred CEEEEeCCCCCCC----cC---cCCCCC------EEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCcC
Confidence 4789999999987 11 112222 6888999999986532 3444444432 22 3678999999631
Q ss_pred hhhhcCChHHHHHHhCCccchhhhhhhhhhhcccceeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeec
Q 001895 777 INALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDL 856 (999)
Q Consensus 777 ~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dl 856 (999)
. .-+.+++++||.+.... +.
T Consensus 65 ~-------------------------------------~~~~~ilv~H~~p~~~~-----------------------~~ 84 (135)
T cd07379 65 D-------------------------------------PEDTDILVTHGPPYGHL-----------------------DL 84 (135)
T ss_pred C-------------------------------------CCCCEEEEECCCCCcCc-----------------------cc
Confidence 1 12347899999642210 00
Q ss_pred ccCCCCCCCCCCCCccCCCCCCceeeCHHHHHHHHHHcCCcEEEEeccccccceE
Q 001895 857 LWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 911 (999)
Q Consensus 857 lWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 911 (999)
++ . . ..+|.+.+.+++++.+.+++|-||.-.+.|++
T Consensus 85 ~~----------~--------~-~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 85 VS----------S--------G-QRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred cc----------c--------C-cccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 00 0 0 23577889999999999999999999888876
No 77
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.35 E-value=1.1e-06 Score=70.42 Aligned_cols=46 Identities=37% Similarity=0.862 Sum_probs=41.2
Q ss_pred CCcccEEEEECCcEEEEEccC---CCCCCCCeEEEEECCCCCceEEEcccCC
Q 001895 227 PRYGHVMALVGQRYLMAIGGN---DGKRPLADVWALDTAAKPYEWRKLEPEG 275 (999)
Q Consensus 227 ~R~~h~~~v~~~~~Lyv~GG~---~g~~~~ndv~~yDl~s~~~~W~~v~~~~ 275 (999)
+|++|+++++++ +||||||. +.....+++++||+++. +|+.+++++
T Consensus 1 ~r~~hs~~~~~~-kiyv~GG~~~~~~~~~~~~v~~~d~~t~--~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDG-KIYVFGGYGTDNGGSSSNDVWVFDTETN--QWTELSPMG 49 (49)
T ss_pred CccceEEEEECC-EEEEECCcccCCCCcccceeEEEECCCC--EEeecCCCC
Confidence 699999999998 99999999 55667999999999999 999998763
No 78
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.33 E-value=1.7e-06 Score=92.33 Aligned_cols=113 Identities=23% Similarity=0.238 Sum_probs=73.5
Q ss_pred CeEEEecCCCCHHHHH-HHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccch
Q 001895 699 PIKIFGDLHGQFGDLM-RLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L~-~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (999)
+|.++|||||++.... +.++..+ .+ .+||+||+++. +.+++..|..+ +..+++++||||.+..
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~~---pD------~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLLQ---PD------LVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYD 65 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhccC---CC------EEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCccccc
Confidence 5899999999987643 3443332 12 68999999864 57777776554 2358999999997543
Q ss_pred hhh---cC-----------------------------------------C-hHHHHHHhCCccchhhhhhhhhhhcccce
Q 001895 778 NAL---FG-----------------------------------------F-RIECIERMGERDGIWAWHRINRLFNWLPL 812 (999)
Q Consensus 778 ~~~---~g-----------------------------------------f-~~e~~~~~g~~~~~~~~~~~~~~f~~LPl 812 (999)
... +. + ..++...|+- ...++.+..+++.++.
T Consensus 66 ~~~~~k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi---~s~~eA~~~ive~~~~ 142 (238)
T cd07397 66 ATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGV---ISLEESAQRIIAAAKK 142 (238)
T ss_pred ccccchHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCC---CCHHHHHHHHHHHhhh
Confidence 200 00 0 1245555652 2456777777888864
Q ss_pred eEEEcCcEEEecCCccCc
Q 001895 813 AALIEKKIICMHGGIGRS 830 (999)
Q Consensus 813 aa~i~~~il~vHgGi~~~ 830 (999)
+......||+.|+++...
T Consensus 143 ~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 143 APPDLPLILLAHNGPSGL 160 (238)
T ss_pred cCCCCCeEEEeCcCCcCC
Confidence 444445799999998654
No 79
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.33 E-value=4e-06 Score=89.37 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=56.0
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCcccc
Q 001895 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 775 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~ 775 (999)
.+|.+++||||++..|.++++.+.....+ .+|++||++++|...-++..++..|... +..+++++||||..
T Consensus 5 ~kIl~iSDiHgn~~~le~l~~~~~~~~~D------~vv~~GDl~~~g~~~~~~~~~l~~l~~l-~~pv~~V~GNhD~~ 75 (224)
T cd07388 5 RYVLATSNPKGDLEALEKLVGLAPETGAD------AIVLIGNLLPKAAKSEDYAAFFRILGEA-HLPTFYVPGPQDAP 75 (224)
T ss_pred eEEEEEEecCCCHHHHHHHHHHHhhcCCC------EEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEcCCCChH
Confidence 35899999999999999999876322223 6899999999997777777777666433 34699999999975
No 80
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.31 E-value=7.3e-07 Score=70.61 Aligned_cols=45 Identities=38% Similarity=0.753 Sum_probs=41.1
Q ss_pred CCcccEEEEECCcEEEEEccCCC-CCCCCeEEEEECCCCCceEEEcccC
Q 001895 227 PRYGHVMALVGQRYLMAIGGNDG-KRPLADVWALDTAAKPYEWRKLEPE 274 (999)
Q Consensus 227 ~R~~h~~~v~~~~~Lyv~GG~~g-~~~~ndv~~yDl~s~~~~W~~v~~~ 274 (999)
+|++|+++++++ +|||+||.++ ...++++++||+.++ +|+.++++
T Consensus 1 pR~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGN-KIYVIGGYDGNNQPTNSVEVYDPETN--TWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETT-EEEEEEEBESTSSBEEEEEEEETTTT--EEEEEEEE
T ss_pred CCccCEEEEECC-EEEEEeeecccCceeeeEEEEeCCCC--EEEEcCCC
Confidence 689999999998 8999999988 778999999999999 99998775
No 81
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.30 E-value=2.3e-06 Score=86.62 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=46.7
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCC-CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccc
Q 001895 699 PIKIFGDLHGQFGDLMRLFDEYGSP-STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L~~il~~~g~~-~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (999)
++.|++|+||++..+..+++..... ..+ .++++||++ +.+++.+|..+. ..++.++||||.
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~ 63 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVD------LVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDG 63 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCC------EEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCc
Confidence 5899999999998777766665443 223 688999999 467777776542 259999999998
No 82
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.26 E-value=1e-06 Score=69.76 Aligned_cols=44 Identities=25% Similarity=0.532 Sum_probs=40.1
Q ss_pred CCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEe
Q 001895 174 PRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVV 219 (999)
Q Consensus 174 pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~ 219 (999)
||.+|++++++++|||+||.......++++++||+.++ +|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETN--TWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTT--EEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCC--EEEEcC
Confidence 69999999999999999999887788999999999996 599998
No 83
>PF13854 Kelch_5: Kelch motif
Probab=98.26 E-value=1.6e-06 Score=67.05 Aligned_cols=40 Identities=40% Similarity=0.578 Sum_probs=36.2
Q ss_pred CCCCCcCcEEEEeCCEEEEEcccC-CCCCCcCcEEEEecCC
Q 001895 171 PPTPRAAHVATAVGTMVVIQGGIG-PAGLSAEDLHVLDLTQ 210 (999)
Q Consensus 171 ~P~pR~~hsa~~~g~~iyv~GG~~-~~~~~~~dv~vyD~~t 210 (999)
.|.+|.+|++++++++||||||.. ......+|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 489999999999999999999998 3677889999999876
No 84
>PF13854 Kelch_5: Kelch motif
Probab=98.20 E-value=2.4e-06 Score=66.09 Aligned_cols=39 Identities=36% Similarity=0.701 Sum_probs=35.2
Q ss_pred CCCCCcccEEEEECCcEEEEEccCCC--CCCCCeEEEEECCC
Q 001895 224 GPGPRYGHVMALVGQRYLMAIGGNDG--KRPLADVWALDTAA 263 (999)
Q Consensus 224 ~P~~R~~h~~~v~~~~~Lyv~GG~~g--~~~~ndv~~yDl~s 263 (999)
+|.+|++|+++++++ +|||+||.++ ...++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~-~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGN-NIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECC-EEEEEcCccCCCCCEECcEEEEECCC
Confidence 489999999999997 8999999984 66799999999976
No 85
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.18 E-value=1.5e-05 Score=76.32 Aligned_cols=67 Identities=27% Similarity=0.394 Sum_probs=49.0
Q ss_pred EEEecCCCCHHHHHHHH--HHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCcc
Q 001895 701 KIFGDLHGQFGDLMRLF--DEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHE 773 (999)
Q Consensus 701 ~vvGDiHG~~~~L~~il--~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE 773 (999)
+++||+|+......... ........+ .+|++||+++.+....+........+......++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~------~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPD------FVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCC------EEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce
Confidence 47999999999988865 222111112 68899999999998877766544444455578999999999
No 86
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.04 E-value=0.0011 Score=70.69 Aligned_cols=110 Identities=19% Similarity=0.283 Sum_probs=75.5
Q ss_pred EEEEEcccCCCCCCcCcEEEEecCCCC-Cc-----eEEEeecCCCCCCCcccEEEEE---CCcEEEEEccCCC-------
Q 001895 186 MVVIQGGIGPAGLSAEDLHVLDLTQQR-PR-----WHRVVVQGPGPGPRYGHVMALV---GQRYLMAIGGNDG------- 249 (999)
Q Consensus 186 ~iyv~GG~~~~~~~~~dv~vyD~~t~t-~k-----W~~v~~~g~~P~~R~~h~~~v~---~~~~Lyv~GG~~g------- 249 (999)
.-+|.||..+....++.+|++.+.+.. ++ ...-...|+.|.+||+|++.++ +....++|||..-
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 566789999988889999999888653 22 2333457999999999999887 3347899999731
Q ss_pred -------CCCCCeEEEEECCCCCceEEEc--ccCCCCCCCccceEEEEEeCCEEEEEeccC
Q 001895 250 -------KRPLADVWALDTAAKPYEWRKL--EPEGEGPPPCMYATASARSDGLLLLCGGRD 301 (999)
Q Consensus 250 -------~~~~ndv~~yDl~s~~~~W~~v--~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~ 301 (999)
..+...|+.+|++-. .++.- +.... ....+.+...++.+|++||..
T Consensus 120 TenWNsVvDC~P~VfLiDleFG--C~tah~lpEl~d----G~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFG--CCTAHTLPELQD----GQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred hhhcceeccCCCeEEEEecccc--ccccccchhhcC----CeEEEEEEecCceEEEEccEE
Confidence 123457888888765 44332 22222 233444455589999999974
No 87
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=97.95 E-value=0.00022 Score=73.62 Aligned_cols=58 Identities=24% Similarity=0.427 Sum_probs=42.2
Q ss_pred CeEEEecCC-CCHH-----HHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCc
Q 001895 699 PIKIFGDLH-GQFG-----DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 772 (999)
Q Consensus 699 ~i~vvGDiH-G~~~-----~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNH 772 (999)
.|.||+|.| |.-. .+.++|+.. ..+ .++.+||+++ .+++.+|..++ ..++.++|||
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~---~~d------~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~ 62 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPG---KIQ------HVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDF 62 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccC---CCC------EEEECCCCCC-----HHHHHHHHhhC----CceEEEECCC
Confidence 378999999 6543 356666541 122 6889999987 78888776652 2589999999
Q ss_pred cc
Q 001895 773 EA 774 (999)
Q Consensus 773 E~ 774 (999)
|.
T Consensus 63 D~ 64 (178)
T cd07394 63 DE 64 (178)
T ss_pred Cc
Confidence 97
No 88
>smart00612 Kelch Kelch domain.
Probab=97.95 E-value=1.3e-05 Score=62.98 Aligned_cols=47 Identities=30% Similarity=0.599 Sum_probs=39.8
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeCC
Q 001895 115 RLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGT 185 (999)
Q Consensus 115 ~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g~ 185 (999)
+||++||..... .++++++||+.+++|+.++++ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~---------------------~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ---------------------RLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc---------------------eeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 489999985422 778999999999999999876 79999999998764
No 89
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.94 E-value=0.0013 Score=70.25 Aligned_cols=148 Identities=18% Similarity=0.214 Sum_probs=93.6
Q ss_pred ccCCCCCCCCCceEEEEcccCCCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCc--
Q 001895 84 KKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNK-- 161 (999)
Q Consensus 84 ~~~~~P~pR~ghs~t~~~~~~~~~~~~~~~~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~-- 161 (999)
...-.|+-|+=+.+..-...+++ ...-++.||.+.++. ..+.+|++...+..
T Consensus 15 dSCYLPPLR~PAv~~~~~~~~~~------~~~YlIHGGrTPNNE--------------------lS~~LY~ls~~s~~cN 68 (337)
T PF03089_consen 15 DSCYLPPLRCPAVCHLSDPSDGE------PEQYLIHGGRTPNNE--------------------LSSSLYILSVDSRGCN 68 (337)
T ss_pred CcccCCCCCCccEeeecCCCCCC------eeeEEecCCcCCCcc--------------------cccceEEEEeecCCCC
Confidence 34456777776666553332221 345667788877654 77788888766432
Q ss_pred ------EEEecCCCCCCCCCcCcEEEEe---CC-EEEEEcccCC--CC-----------CCcCcEEEEecCCCCCceEEE
Q 001895 162 ------WSRITPFGEPPTPRAAHVATAV---GT-MVVIQGGIGP--AG-----------LSAEDLHVLDLTQQRPRWHRV 218 (999)
Q Consensus 162 ------W~~l~~~g~~P~pR~~hsa~~~---g~-~iyv~GG~~~--~~-----------~~~~dv~vyD~~t~t~kW~~v 218 (999)
...-.-.|+.|.+|++|++-++ |. ..++|||..- .+ .....+|++|+.-.-..=..+
T Consensus 69 kK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l 148 (337)
T PF03089_consen 69 KKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL 148 (337)
T ss_pred ceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc
Confidence 3334456889999999999887 33 7899999641 11 123467888876431112223
Q ss_pred eecCCCCCCCcccEEEEECCcEEEEEccCC--CCCCCCeEEEEEC
Q 001895 219 VVQGPGPGPRYGHVMALVGQRYLMAIGGND--GKRPLADVWALDT 261 (999)
Q Consensus 219 ~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~--g~~~~ndv~~yDl 261 (999)
+ .+--+...|.+..-++ .+|++||.. .+..-..++++.+
T Consensus 149 p---El~dG~SFHvslar~D-~VYilGGHsl~sd~Rpp~l~rlkV 189 (337)
T PF03089_consen 149 P---ELQDGQSFHVSLARND-CVYILGGHSLESDSRPPRLYRLKV 189 (337)
T ss_pred h---hhcCCeEEEEEEecCc-eEEEEccEEccCCCCCCcEEEEEE
Confidence 2 5667788888877787 999999974 3334445665543
No 90
>smart00612 Kelch Kelch domain.
Probab=97.92 E-value=1.5e-05 Score=62.62 Aligned_cols=47 Identities=32% Similarity=0.471 Sum_probs=39.3
Q ss_pred EEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECC
Q 001895 345 RLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGD 416 (999)
Q Consensus 345 ~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~ 416 (999)
+|||+||..... ..+++++||+.+++|..++.+ +.+|+.|+++++++
T Consensus 1 ~iyv~GG~~~~~----~~~~v~~yd~~~~~W~~~~~~---------------------~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ----RLKSVEVYDPETNKWTPLPSM---------------------PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc----eeeeEEEECCCCCeEccCCCC---------------------CCccccceEEEeCC
Confidence 489999986532 378899999999999998877 67999999988764
No 91
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.88 E-value=0.00025 Score=73.30 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=44.4
Q ss_pred eEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-HHHHHHHHHhhhcCCCCEEEecCCccccc
Q 001895 700 IKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-LETITLLLALKVEYPNNVHLIRGNHEAAD 776 (999)
Q Consensus 700 i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-~evl~ll~~lk~~~P~~v~llrGNHE~~~ 776 (999)
|.+++||||++..|.+ ........+ -+|+.||++++|... .+.+..|.. .+..++.+.||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D------~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEAD------AVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCC------EEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHH
Confidence 5789999999998876 222211222 688999999999763 333333332 2446999999999754
No 92
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.80 E-value=0.0019 Score=69.49 Aligned_cols=149 Identities=14% Similarity=0.170 Sum_probs=95.2
Q ss_pred cCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEe-CCEEEEEcccCCCCCCcCcEEEEecCC--CCCceEEEeecCCCC
Q 001895 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQ--QRPRWHRVVVQGPGP 225 (999)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-g~~iyv~GG~~~~~~~~~dv~vyD~~t--~t~kW~~v~~~g~~P 225 (999)
...-..||+.+++++.+... .--...+.+.+ ++.+++.||...+ ...+..|++.. .+..|.... ..|-
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~--~~m~ 115 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP--NDMQ 115 (243)
T ss_pred eEEEEEEecCCCcEEeccCC----CCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc--cccc
Confidence 55667899999999998754 22222233333 5699999998652 24677788765 123588775 2488
Q ss_pred CCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECC---CCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCC
Q 001895 226 GPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTA---AKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (999)
Q Consensus 226 ~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~---s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~ 302 (999)
.+|...+++.+.+++++|+||.... ..+.|... .....|..+......-+.-.+-......+|+|++|+..
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-- 189 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNNP----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-- 189 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCCC----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--
Confidence 9999999999999999999998732 22223321 12224444433222122235556667779999999874
Q ss_pred CCCCcccEEEEecCCC
Q 001895 303 SSVPLASAYGLAKHRD 318 (999)
Q Consensus 303 ~~~~~~d~~~~~~~~~ 318 (999)
+.+.||..++
T Consensus 190 ------~s~i~d~~~n 199 (243)
T PF07250_consen 190 ------GSIIYDYKTN 199 (243)
T ss_pred ------CcEEEeCCCC
Confidence 3345666655
No 93
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.77 E-value=0.0008 Score=72.37 Aligned_cols=152 Identities=14% Similarity=0.235 Sum_probs=97.7
Q ss_pred EEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCC----CCceEEEcccCCCCC
Q 001895 203 LHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAA----KPYEWRKLEPEGEGP 278 (999)
Q Consensus 203 v~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s----~~~~W~~v~~~~~~P 278 (999)
-.+||+.+++ ++.+.+ ..--...+.+.+.++.+++.||..+. ...+-.|++.. . .|........
T Consensus 48 s~~yD~~tn~--~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~--~w~e~~~~m~-- 115 (243)
T PF07250_consen 48 SVEYDPNTNT--FRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTC--DWTESPNDMQ-- 115 (243)
T ss_pred EEEEecCCCc--EEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCC--CceECccccc--
Confidence 4578998864 777642 33334444455666689999998542 34566777754 4 7988764322
Q ss_pred CCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCC---CCeEEEEECC---CCCCCCcceeEEEEECCEEEEEcCc
Q 001895 279 PPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHR---DGRWEWAIAP---GVSPSPRYQHAAVFVNARLHVSGGA 352 (999)
Q Consensus 279 ~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~---~~~W~w~~~~---g~~P~~R~~hsav~~~~~L~V~GG~ 352 (999)
.+|.+.++....+|+++|+||... ..+.|.+.. ...+.|.... ...+...|-+..+.-+|+||+++..
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNN------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCC------CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 348999999999999999999873 334444432 1223332221 1223444555666669999999863
Q ss_pred CCCCCCcccCCeEEEEECCCCeE-EEcccCcC
Q 001895 353 LGGGRMVEDSSSVAVLDTAAGVW-CDTKSVVT 383 (999)
Q Consensus 353 ~~~~~~~~~~~~v~vyD~~t~~W-~~v~~~~~ 383 (999)
+-.+||+.++++ +.++.++.
T Consensus 190 -----------~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 190 -----------GSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred -----------CcEEEeCCCCeEEeeCCCCCC
Confidence 255799999987 77777743
No 94
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.70 E-value=6.9e-06 Score=93.46 Aligned_cols=243 Identities=12% Similarity=0.015 Sum_probs=163.1
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCeeeecC----CeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCC
Q 001895 670 FLDCNEIADLCDSAERIFSSEPSVLQLKA----PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQ 745 (999)
Q Consensus 670 ~l~~~~i~~l~~~~~~~~~~e~~~l~~~~----~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~ 745 (999)
.|...++..+++.+.+++..+|+...+.+ -.+.++|.||.+.|+.++++.- |.-. .-|++-|++|+++.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~-----K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYI-----KAYVRRGTAVMALG 86 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhh-----heeeeccHHHHhHH
Confidence 56778899999999999999998887743 3788999999999999998764 2111 15999999999999
Q ss_pred ChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhhcccceeEEEcCcEEEecC
Q 001895 746 HSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHG 825 (999)
Q Consensus 746 ~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHg 825 (999)
...+.+..|...+...|+...+.|++||+..+-..++|..+....+++. ...++..+...+.. |++..+.+.++=-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~-~s~~~~~~~~~~~~-~i~~~y~g~~le~~- 163 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDK-KSVVEMKIDEEDMD-LIESDYSGPVLEDH- 163 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCC-cccccccccccccc-ccccccCCcccccc-
Confidence 9999999999999999999999999999999999999998887777654 22333333332222 14445544333322
Q ss_pred CccCc--------------c-----cC-HHHh----hhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCCcee
Q 001895 826 GIGRS--------------I-----NH-VEQI----ENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVT 881 (999)
Q Consensus 826 Gi~~~--------------~-----~~-~~~i----~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~ 881 (999)
-+... + -+ +++. +.+..++++ .+-.|.+|+++... -..+-...++.+ ..
T Consensus 164 kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~----~~~~d~~~sv~gd~--hGqfydl~nif~-l~ 236 (476)
T KOG0376|consen 164 KVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEI----SVPGDVKISVCGDT--HGQFYDLLNIFE-LN 236 (476)
T ss_pred hhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEe----ecCCCceEEecCCc--cccccchhhhHh-hc
Confidence 11000 0 00 0111 111122222 14467788888652 223334455555 34
Q ss_pred eCHHHHHHHHHHcCCcEEEEeccccc-----------c-ceEEec---CCeEEEEecccccCC
Q 001895 882 FGPDRVMEFCNNNDLQLIVRAHECVM-----------D-GFERFA---QGHLITLFSATNYCG 929 (999)
Q Consensus 882 fg~~~~~~fl~~~~l~~iiR~H~~~~-----------~-G~~~~~---~~~~iTvFSa~~y~~ 929 (999)
.+++....||.+.++.-+++.|.-+. + +|.... .+.++++|+++.+|-
T Consensus 237 g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 237 GLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred CCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 56777888898999998888886542 1 111111 235899999998874
No 95
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.67 E-value=0.00039 Score=67.85 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=40.1
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCcc
Q 001895 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHE 773 (999)
Q Consensus 701 ~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE 773 (999)
.||+|.||..+.+.+++... ...+ .++++||+. .+++.++..++ ...++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~~--~~~d------~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVRL--EGVD------LILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD 56 (129)
T ss_pred CeeccccCccccchHHHhhC--CCCC------EEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence 38999999988887777652 2222 799999984 35566666552 225899999999
No 96
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.59 E-value=0.012 Score=63.14 Aligned_cols=206 Identities=7% Similarity=0.059 Sum_probs=114.0
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCc-EEEEe----CC-EEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCC
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAH-VATAV----GT-MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~h-sa~~~----g~-~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~ 223 (999)
..++++||.|++|..++.....+.....+ .+..+ +. +|+.+...... .....+++|++.++ .|..+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~--~Wr~~~~~-- 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSN--SWRTIECS-- 88 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCC--CccccccC--
Confidence 37899999999999997532100001111 11112 12 66666543211 13357889999986 49988622
Q ss_pred CCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEE-cccCCCCCCCccceEEEEEeCCEEEEEeccCC
Q 001895 224 GPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRK-LEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (999)
Q Consensus 224 ~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~-v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~ 302 (999)
.+........+.+++ .||-+.-.........+..||+.+. +|.. ++.... .............+|+|.++.....
T Consensus 89 ~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~IvsFDl~~E--~f~~~i~~P~~-~~~~~~~~~L~~~~G~L~~v~~~~~ 164 (230)
T TIGR01640 89 PPHHPLKSRGVCING-VLYYLAYTLKTNPDYFIVSFDVSSE--RFKEFIPLPCG-NSDSVDYLSLINYKGKLAVLKQKKD 164 (230)
T ss_pred CCCccccCCeEEECC-EEEEEEEECCCCCcEEEEEEEcccc--eEeeeeecCcc-ccccccceEEEEECCEEEEEEecCC
Confidence 122112222556777 6887764432222236999999999 8884 433211 1111123345556788888765432
Q ss_pred CCCCcccEEEEecCCCCeEEEEECCCCCCCCcc----eeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCC
Q 001895 303 SSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRY----QHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG 373 (999)
Q Consensus 303 ~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~----~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~ 373 (999)
. ...++|.+......+|+..-.-+..+.+.. ....+..+++|++.... .. ..-+..||+.++
T Consensus 165 ~--~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~------~~~~~~y~~~~~ 230 (230)
T TIGR01640 165 T--NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-EN------PFYIFYYNVGEN 230 (230)
T ss_pred C--CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CC------ceEEEEEeccCC
Confidence 2 236899997665567765433332222221 12345567888887653 10 123888998874
No 97
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.49 E-value=0.00032 Score=76.13 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=46.8
Q ss_pred CCeEEEecCCCCH------HHHHHHHHHhCCCCCCCCccceeEEEeccccCC--C-----CChHHHHHHHHHhhhcCCCC
Q 001895 698 APIKIFGDLHGQF------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDR--G-----QHSLETITLLLALKVEYPNN 764 (999)
Q Consensus 698 ~~i~vvGDiHG~~------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDR--G-----~~s~evl~ll~~lk~~~P~~ 764 (999)
+++++++|+|... ..|+++|+.... ..+ .++++||++|. | +...+++.+|..|+.. +-.
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~-~~d------~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~ 72 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEAR-QAD------ALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVP 72 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhc-cCC------EEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCe
Confidence 3689999999542 235555543211 112 68889999985 2 3346777777777643 246
Q ss_pred EEEecCCcccc
Q 001895 765 VHLIRGNHEAA 775 (999)
Q Consensus 765 v~llrGNHE~~ 775 (999)
|++++||||..
T Consensus 73 v~~v~GNHD~~ 83 (241)
T PRK05340 73 CYFMHGNRDFL 83 (241)
T ss_pred EEEEeCCCchh
Confidence 99999999973
No 98
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.45 E-value=0.0073 Score=64.33 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=39.1
Q ss_pred eCHHHHHHHHHHc-CCcEEEEeccccccceEEe-----cCCeEEEEecccccCC--CCCCe-EEEEEEcCC-ceEEeEEe
Q 001895 882 FGPDRVMEFCNNN-DLQLIVRAHECVMDGFERF-----AQGHLITLFSATNYCG--TANNA-GAILVLGRD-LVVVPKLI 951 (999)
Q Consensus 882 fg~~~~~~fl~~~-~l~~iiR~H~~~~~G~~~~-----~~~~~iTvFSa~~y~~--~~~n~-ga~l~~~~~-~~~~~~~~ 951 (999)
.+.+.+.+.++++ ++++++-||.=. .+.... .++.+..+++ +|.. ..+|. =.++.++.+ .+|..+.+
T Consensus 135 ~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~--~~q~~~~~g~~~~r~~~f~~~~~~i~~~ty 211 (214)
T cd07399 135 DGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLA--DYQGEPNGGNGFLRLLEFDPDNNKIDVRTY 211 (214)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEee--cccCCCCCCcceEEEEEEecCCCEEEEEeC
Confidence 4666788899988 899999999533 233322 1334555543 3421 11221 134555555 46777766
Q ss_pred cc
Q 001895 952 HP 953 (999)
Q Consensus 952 ~~ 953 (999)
.|
T Consensus 212 sp 213 (214)
T cd07399 212 SP 213 (214)
T ss_pred CC
Confidence 55
No 99
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.43 E-value=0.00011 Score=74.73 Aligned_cols=67 Identities=27% Similarity=0.236 Sum_probs=45.6
Q ss_pred eEEEecCCCCHHHHHHHHHH-hCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCcccc
Q 001895 700 IKIFGDLHGQFGDLMRLFDE-YGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 775 (999)
Q Consensus 700 i~vvGDiHG~~~~L~~il~~-~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~ 775 (999)
+.+++|||+....+...+.. ......+ -++++||+++++....++. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d------~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDAD------ILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCC------EEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 46899999999877665531 1111122 5888999999987765554 2222 23345799999999985
No 100
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.42 E-value=0.002 Score=63.72 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=28.4
Q ss_pred eEEEeccccCCCCCh-H-HHHHHHHHhhhcCCCCEEEecCCccc
Q 001895 733 DYLFLGDYVDRGQHS-L-ETITLLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 733 ~~vfLGDyVDRG~~s-~-evl~ll~~lk~~~P~~v~llrGNHE~ 774 (999)
.+|++||+++.|... . +...++-.++... ..+++++||||.
T Consensus 38 ~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNHD~ 80 (144)
T cd07400 38 LVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNHDV 80 (144)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCCeE
Confidence 688899999998742 1 2334444444322 379999999998
No 101
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.37 E-value=0.00037 Score=77.02 Aligned_cols=70 Identities=20% Similarity=0.082 Sum_probs=49.9
Q ss_pred CCeEEEecCCCC----HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCC--CChHHHHHHHHHhhhcCCCCEEEecCC
Q 001895 698 APIKIFGDLHGQ----FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG--QHSLETITLLLALKVEYPNNVHLIRGN 771 (999)
Q Consensus 698 ~~i~vvGDiHG~----~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG--~~s~evl~ll~~lk~~~P~~v~llrGN 771 (999)
.+|.+++|||.. ...+.++++.......+ -++++|||+|++ ...-+++.+|..|+... .+|.+.||
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pD------lVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GN 121 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQKPD------LILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGN 121 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCC------EEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCC
Confidence 459999999976 45577777665432222 688899999954 33345667777777654 49999999
Q ss_pred cccc
Q 001895 772 HEAA 775 (999)
Q Consensus 772 HE~~ 775 (999)
||..
T Consensus 122 HD~~ 125 (271)
T PRK11340 122 HDRP 125 (271)
T ss_pred CCcc
Confidence 9973
No 102
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.31 E-value=0.00039 Score=74.22 Aligned_cols=70 Identities=30% Similarity=0.311 Sum_probs=49.8
Q ss_pred CCeEEEecCCCCHH----HHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChH-HHHHHHHHhhhcCCCCEEEecCCc
Q 001895 698 APIKIFGDLHGQFG----DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-ETITLLLALKVEYPNNVHLIRGNH 772 (999)
Q Consensus 698 ~~i~vvGDiHG~~~----~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-evl~ll~~lk~~~P~~v~llrGNH 772 (999)
.++.+++|+|.... .+.++++.+.....+ -+|++||++|.+.... ++..++..++. +..++++.|||
T Consensus 2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d------~vl~~GD~~~~~~~~~~~~~~~l~~l~~--~~~v~~v~GNH 73 (223)
T cd07385 2 LRIAHLSDLHLGPFVSRERLERLVEKINALKPD------LVVLTGDLVDGSVDVLELLLELLKKLKA--PLGVYAVLGNH 73 (223)
T ss_pred CEEEEEeecCCCccCCHHHHHHHHHHHhccCCC------EEEEcCcccCCcchhhHHHHHHHhccCC--CCCEEEECCCc
Confidence 36899999998743 566776665432222 5888999999988765 55555555533 34699999999
Q ss_pred ccc
Q 001895 773 EAA 775 (999)
Q Consensus 773 E~~ 775 (999)
|..
T Consensus 74 D~~ 76 (223)
T cd07385 74 DYY 76 (223)
T ss_pred ccc
Confidence 984
No 103
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.11 E-value=0.0015 Score=70.49 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=43.4
Q ss_pred eEEEecCCCCH------HHHHHHHHHhCCCCCCCCccceeEEEeccccCC--CC---C--hHHHHHHHHHhhhcCCCCEE
Q 001895 700 IKIFGDLHGQF------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDR--GQ---H--SLETITLLLALKVEYPNNVH 766 (999)
Q Consensus 700 i~vvGDiHG~~------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDR--G~---~--s~evl~ll~~lk~~~P~~v~ 766 (999)
+++++|+|... ..|++.|..... ..+ .++++||++|. |. . ..+++.+|..|+.. +..|+
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~-~~d------~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~ 72 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEAR-KAD------ALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCY 72 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhc-cCC------EEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEE
Confidence 36899999543 234555544321 122 68889999995 21 1 23556666666543 35799
Q ss_pred EecCCcccc
Q 001895 767 LIRGNHEAA 775 (999)
Q Consensus 767 llrGNHE~~ 775 (999)
++.||||..
T Consensus 73 ~v~GNHD~~ 81 (231)
T TIGR01854 73 FMHGNRDFL 81 (231)
T ss_pred EEcCCCchh
Confidence 999999973
No 104
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.08 E-value=0.31 Score=56.94 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=102.4
Q ss_pred eEEEEECCCCc--EEEecCCCCC-----CCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCC
Q 001895 151 DVHCYDVLTNK--WSRITPFGEP-----PTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (999)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g~~-----P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~ 223 (999)
.+++||..+++ |+.-...... ..++..-+.++.++++|+.+. ...++.||..+....|+.-.
T Consensus 80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~---- 148 (394)
T PRK11138 80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------KGQVYALNAEDGEVAWQTKV---- 148 (394)
T ss_pred eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-------CCEEEEEECCCCCCcccccC----
Confidence 68889988764 8754322100 012333345666888887543 24799999988777897643
Q ss_pred CCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCC
Q 001895 224 GPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDAS 303 (999)
Q Consensus 224 ~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~ 303 (999)
+.. ...+-++.++ .+|+..+ + ..++.||..+....|+.-...+. ...+...+-++.++.+|+..+ +
T Consensus 149 -~~~-~~ssP~v~~~-~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~~~--~~~~~~~sP~v~~~~v~~~~~-~-- 214 (394)
T PRK11138 149 -AGE-ALSRPVVSDG-LVLVHTS-N-----GMLQALNESDGAVKWTVNLDVPS--LTLRGESAPATAFGGAIVGGD-N-- 214 (394)
T ss_pred -CCc-eecCCEEECC-EEEEECC-C-----CEEEEEEccCCCEeeeecCCCCc--ccccCCCCCEEECCEEEEEcC-C--
Confidence 111 1122234454 6776433 2 36999999998888987543211 000111222344666666432 2
Q ss_pred CCCcccEEEEecCCCCeEEEEECCCCCCCC----c---ceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCe--
Q 001895 304 SVPLASAYGLAKHRDGRWEWAIAPGVSPSP----R---YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV-- 374 (999)
Q Consensus 304 ~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~----R---~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~-- 374 (999)
..++.++.. +|+..|......+... | ...+-++.++.+|+.+. ...++++|+.+++
T Consensus 215 ----g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~----------~g~l~ald~~tG~~~ 279 (394)
T PRK11138 215 ----GRVSAVLME-QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY----------NGNLVALDLRSGQIV 279 (394)
T ss_pred ----CEEEEEEcc-CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc----------CCeEEEEECCCCCEE
Confidence 234455543 4554555332211100 1 12344567889988653 2358999999874
Q ss_pred EEE
Q 001895 375 WCD 377 (999)
Q Consensus 375 W~~ 377 (999)
|+.
T Consensus 280 W~~ 282 (394)
T PRK11138 280 WKR 282 (394)
T ss_pred Eee
Confidence 764
No 105
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.04 E-value=0.0018 Score=66.49 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=27.0
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHhhhcCCCCEEEecCCcccc
Q 001895 733 DYLFLGDYVDRGQHS--LETITLLLALKVEYPNNVHLIRGNHEAA 775 (999)
Q Consensus 733 ~~vfLGDyVDRG~~s--~evl~ll~~lk~~~P~~v~llrGNHE~~ 775 (999)
.+|++||++|..... .+...+-+.......-.+++++||||..
T Consensus 44 ~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 44 RLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred EEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccc
Confidence 799999999865432 2222221111223345799999999984
No 106
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.03 E-value=0.026 Score=57.73 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=44.0
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccc
Q 001895 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 776 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~ 776 (999)
..|.|++|.||...+..+.++.......+ -+|.+||++...... +|......+++.+|||.|...
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d------~vih~GD~~~~~~~~--------~l~~~~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVD------AVIHAGDSTSPFTLD--------ALEGGLAAKLIAVRGNCDGEV 66 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCC------EEEECCCcCCccchH--------HhhcccccceEEEEccCCCcc
Confidence 46899999999997655555554433333 578899999865431 111112368999999999843
No 107
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=96.97 E-value=0.0016 Score=70.54 Aligned_cols=68 Identities=26% Similarity=0.215 Sum_probs=46.4
Q ss_pred CeEEEecCCCCH-----H-HHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCc
Q 001895 699 PIKIFGDLHGQF-----G-DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 772 (999)
Q Consensus 699 ~i~vvGDiHG~~-----~-~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNH 772 (999)
+|.+++|+|..+ . .|.++++.+.-...+ -+|+.||++++.....+++..|..+ .+..|+++.|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d------~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKID------HLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCC------EEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCC
Confidence 478999999763 1 245555555322222 6889999999876666666555543 334699999999
Q ss_pred ccc
Q 001895 773 EAA 775 (999)
Q Consensus 773 E~~ 775 (999)
|..
T Consensus 72 D~~ 74 (239)
T TIGR03729 72 DML 74 (239)
T ss_pred CCC
Confidence 974
No 108
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.92 E-value=0.0029 Score=64.71 Aligned_cols=40 Identities=35% Similarity=0.535 Sum_probs=29.9
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccch
Q 001895 733 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (999)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (999)
.+|++||++++|..... +.+|.++ +..+++++||||....
T Consensus 45 ~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 45 TVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred EEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 79999999999987644 4444443 3469999999997543
No 109
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=96.88 E-value=0.054 Score=59.46 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEE-EEEEcCC
Q 001895 884 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGA-ILVLGRD 943 (999)
Q Consensus 884 ~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga-~l~~~~~ 943 (999)
...+.+.|++.++++++-||.=......+ +|--.-+-.++.++...++.|. ++.++++
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 253 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGRY--GGLEMVVTSAIGAQLGNDKSGLRIVKVTED 253 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceEE--CCEEEEEcCceecccCCCCCCcEEEEECCC
Confidence 35677788999999999999877655432 3321122233333333333443 5556544
No 110
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.81 E-value=0.88 Score=48.47 Aligned_cols=181 Identities=19% Similarity=0.216 Sum_probs=104.9
Q ss_pred CeEEEEECCCCc--EEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEE-EeecCCCCC
Q 001895 150 ADVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHR-VVVQGPGPG 226 (999)
Q Consensus 150 ~dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~-v~~~g~~P~ 226 (999)
..+++||..+++ |+.-... +.....+..++.+|+..+. +.++.+|..+....|+. .......+
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~~------~~~~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~- 111 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLPG------PISGAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAG- 111 (238)
T ss_dssp SEEEEEETTTSEEEEEEECSS------CGGSGEEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCS-
T ss_pred CEEEEEECCCCCEEEEeeccc------cccceeeecccccccccce-------eeeEecccCCcceeeeeccccccccc-
Confidence 389999998875 7766422 2222257778888887632 37999998887778994 43211111
Q ss_pred CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCC----ccceEEEEEeCCEEEEEeccCC
Q 001895 227 PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP----CMYATASARSDGLLLLCGGRDA 302 (999)
Q Consensus 227 ~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~----r~~~~a~~~~~~~LyvfGG~~~ 302 (999)
.+......+.++ .+|+... -..++.+|+.+....|+.....+....+ .......++.++.+|+..+...
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~ 184 (238)
T PF13360_consen 112 VRSSSSPAVDGD-RLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR 184 (238)
T ss_dssp TB--SEEEEETT-EEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS
T ss_pred cccccCceEecC-EEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe
Confidence 233444444555 5666543 3479999999887789885533221000 0112334455678888765431
Q ss_pred CCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCe
Q 001895 303 SSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV 374 (999)
Q Consensus 303 ~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~ 374 (999)
+..+ ...+++-.|...... ........++.||+.. . ...++++|++|++
T Consensus 185 -------~~~~-d~~tg~~~w~~~~~~-----~~~~~~~~~~~l~~~~-~---------~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 185 -------VVAV-DLATGEKLWSKPISG-----IYSLPSVDGGTLYVTS-S---------DGRLYALDLKTGK 233 (238)
T ss_dssp -------EEEE-ETTTTEEEEEECSS------ECECEECCCTEEEEEE-T---------TTEEEEEETTTTE
T ss_pred -------EEEE-ECCCCCEEEEecCCC-----ccCCceeeCCEEEEEe-C---------CCEEEEEECCCCC
Confidence 5666 444556456333111 1122455577888875 2 3569999999985
No 111
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.78 E-value=0.49 Score=55.21 Aligned_cols=181 Identities=17% Similarity=0.211 Sum_probs=103.0
Q ss_pred cCeEEEEECCCCc--EEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeec--CCC
Q 001895 149 TADVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ--GPG 224 (999)
Q Consensus 149 ~~dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~--g~~ 224 (999)
.+.++.||+.+++ |+.-.... ....+...+-++.++.+|+..+. ..++.+|..+....|+.-... +..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~~~~ 240 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPTGAT 240 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEEECCEEEEEcCC-------CEEEEEEccCChhhheeccccCCCcc
Confidence 3468999998876 88753310 01112223344556676664432 468889998876679753211 000
Q ss_pred CCCC---cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccC
Q 001895 225 PGPR---YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRD 301 (999)
Q Consensus 225 P~~R---~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~ 301 (999)
...| ...+-++.++ .+|+.+. + ..++++|+.+....|+.-.. .. ...++.++++|+...
T Consensus 241 ~~~~~~~~~~sP~v~~~-~vy~~~~-~-----g~l~ald~~tG~~~W~~~~~--~~-------~~~~~~~~~vy~~~~-- 302 (394)
T PRK11138 241 EIDRLVDVDTTPVVVGG-VVYALAY-N-----GNLVALDLRSGQIVWKREYG--SV-------NDFAVDGGRIYLVDQ-- 302 (394)
T ss_pred chhcccccCCCcEEECC-EEEEEEc-C-----CeEEEEECCCCCEEEeecCC--Cc-------cCcEEECCEEEEEcC--
Confidence 0001 1123345555 7887553 2 36899999988778986321 10 123456889998742
Q ss_pred CCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCe
Q 001895 302 ASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV 374 (999)
Q Consensus 302 ~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~ 374 (999)
...++.++.. +++-.|.... ...+...+.++.+++||+... ...++++|..+++
T Consensus 303 -----~g~l~ald~~-tG~~~W~~~~---~~~~~~~sp~v~~g~l~v~~~----------~G~l~~ld~~tG~ 356 (394)
T PRK11138 303 -----NDRVYALDTR-GGVELWSQSD---LLHRLLTAPVLYNGYLVVGDS----------EGYLHWINREDGR 356 (394)
T ss_pred -----CCeEEEEECC-CCcEEEcccc---cCCCcccCCEEECCEEEEEeC----------CCEEEEEECCCCC
Confidence 2346777764 4454554322 112333445667899987532 2358899998885
No 112
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.77 E-value=0.0033 Score=69.31 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=47.4
Q ss_pred CeEEEecCC-CC------------HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCC-hHHHHHHHHHhhhcCCCC
Q 001895 699 PIKIFGDLH-GQ------------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-SLETITLLLALKVEYPNN 764 (999)
Q Consensus 699 ~i~vvGDiH-G~------------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-s~evl~ll~~lk~~~P~~ 764 (999)
++.+++|+| +. ...|.++++.+.....+ -+|++||+++.|.. +.+-+..++++-...+-.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d------~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p 75 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLD------FVVQLGDIIDGDNARAEEALDAVLAILDRLKGP 75 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCC------EEEECCCeecCCCchHHHHHHHHHHHHHhcCCC
Confidence 478999999 22 45666777666432222 58889999998873 233343333333333346
Q ss_pred EEEecCCccccch
Q 001895 765 VHLIRGNHEAADI 777 (999)
Q Consensus 765 v~llrGNHE~~~~ 777 (999)
++++.||||....
T Consensus 76 ~~~v~GNHD~~~~ 88 (267)
T cd07396 76 VHHVLGNHDLYNP 88 (267)
T ss_pred EEEecCccccccc
Confidence 9999999998644
No 113
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=96.74 E-value=0.0026 Score=67.67 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=46.0
Q ss_pred CeEEEecCC-CCH--------------HHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcC--
Q 001895 699 PIKIFGDLH-GQF--------------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEY-- 761 (999)
Q Consensus 699 ~i~vvGDiH-G~~--------------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~-- 761 (999)
+|+.++|+| |.. ..|.++++.+.....+ .+|+.||++|....+.+.+..+..+..++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVD------FVLIAGDLFDSNNPSPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCC------EEEECCcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999 422 2355555554332222 58899999998876555443333332222
Q ss_pred -CCCEEEecCCccccch
Q 001895 762 -PNNVHLIRGNHEAADI 777 (999)
Q Consensus 762 -P~~v~llrGNHE~~~~ 777 (999)
.-.++++.||||....
T Consensus 75 ~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 75 AGIPVFIIAGNHDSPSR 91 (223)
T ss_pred CCCCEEEecCCCCCccc
Confidence 3469999999998654
No 114
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.70 E-value=0.0033 Score=68.91 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=44.5
Q ss_pred eEEEecCCCCHHHHHHHHHHhCC---CCCCCCccceeEEEeccccCCCC-ChHHHHH------HHHHh------hhcCCC
Q 001895 700 IKIFGDLHGQFGDLMRLFDEYGS---PSTAGDIAYIDYLFLGDYVDRGQ-HSLETIT------LLLAL------KVEYPN 763 (999)
Q Consensus 700 i~vvGDiHG~~~~L~~il~~~g~---~~~~~~~~~~~~vfLGDyVDRG~-~s~evl~------ll~~l------k~~~P~ 763 (999)
|+|+||+||+++.+.+.++.... ...+ -+|++||+-..+. ..++.+. -+..+ ..+.|-
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D------~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~ 74 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVD------LLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPI 74 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCc------EEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCe
Confidence 68999999999998775554321 1222 5888999975443 3343331 11111 333566
Q ss_pred CEEEecCCcccc
Q 001895 764 NVHLIRGNHEAA 775 (999)
Q Consensus 764 ~v~llrGNHE~~ 775 (999)
-+++|-||||..
T Consensus 75 ~t~fi~GNHE~~ 86 (262)
T cd00844 75 LTIFIGGNHEAS 86 (262)
T ss_pred eEEEECCCCCCH
Confidence 689999999974
No 115
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.64 E-value=0.0066 Score=72.88 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=44.1
Q ss_pred CCeEEEecCC-CCH----HHHHHHHHHh-CCCCCCC--CccceeEEEeccccCC-CCCh---------------HHHHHH
Q 001895 698 APIKIFGDLH-GQF----GDLMRLFDEY-GSPSTAG--DIAYIDYLFLGDYVDR-GQHS---------------LETITL 753 (999)
Q Consensus 698 ~~i~vvGDiH-G~~----~~L~~il~~~-g~~~~~~--~~~~~~~vfLGDyVDR-G~~s---------------~evl~l 753 (999)
..+++++||| |.- ..+.++++.+ |...... ...-..+|++||+||. |.+. -++..+
T Consensus 244 ~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~ 323 (504)
T PRK04036 244 VYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEY 323 (504)
T ss_pred cEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHH
Confidence 5689999999 653 2234444433 2221100 0001178999999994 3221 134455
Q ss_pred HHHhhhcCCCCEEEecCCccccch
Q 001895 754 LLALKVEYPNNVHLIRGNHEAADI 777 (999)
Q Consensus 754 l~~lk~~~P~~v~llrGNHE~~~~ 777 (999)
|..|... -.|++++||||....
T Consensus 324 L~~L~~~--i~V~~ipGNHD~~~~ 345 (504)
T PRK04036 324 LKQIPED--IKIIISPGNHDAVRQ 345 (504)
T ss_pred HHhhhcC--CeEEEecCCCcchhh
Confidence 5555322 369999999997543
No 116
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.47 E-value=2.5 Score=48.86 Aligned_cols=180 Identities=19% Similarity=0.210 Sum_probs=96.8
Q ss_pred eEEEEECCCCc--EEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCC
Q 001895 151 DVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (999)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R 228 (999)
.+++||..+++ |+.-... +..-+.++.++.+|+.+. ...++.||..+....|+.-. +..
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~-----~~~- 136 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDE------RLSGGVGADGGLVFVGTE-------KGEVIALDAEDGKELWRAKL-----SSE- 136 (377)
T ss_pred eEEEEEccCCcEeeeecCCC------CcccceEEcCCEEEEEcC-------CCEEEEEECCCCcEeeeecc-----Cce-
Confidence 68999988765 8754322 122233445667776543 24799999987666787643 111
Q ss_pred cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcc
Q 001895 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLA 308 (999)
Q Consensus 229 ~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~ 308 (999)
...+.++.++ .+|+..+ + ..++.||+.+....|+.-..... .........++.++.+| +|..+ .
T Consensus 137 ~~~~p~v~~~-~v~v~~~-~-----g~l~a~d~~tG~~~W~~~~~~~~--~~~~~~~sp~~~~~~v~-~~~~~------g 200 (377)
T TIGR03300 137 VLSPPLVANG-LVVVRTN-D-----GRLTALDAATGERLWTYSRVTPA--LTLRGSASPVIADGGVL-VGFAG------G 200 (377)
T ss_pred eecCCEEECC-EEEEECC-C-----CeEEEEEcCCCceeeEEccCCCc--eeecCCCCCEEECCEEE-EECCC------C
Confidence 1122334454 6776432 2 35899999888778986433211 00011122234456554 44322 2
Q ss_pred cEEEEecCCCCeEEEEECCCCCCCC-----c---ceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCe--EEE
Q 001895 309 SAYGLAKHRDGRWEWAIAPGVSPSP-----R---YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV--WCD 377 (999)
Q Consensus 309 d~~~~~~~~~~~W~w~~~~g~~P~~-----R---~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~--W~~ 377 (999)
.++.++.. +|+-.|...... |.. | ...+.++.++.+|+... ...+++||+++++ |..
T Consensus 201 ~v~ald~~-tG~~~W~~~~~~-~~g~~~~~~~~~~~~~p~~~~~~vy~~~~----------~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 201 KLVALDLQ-TGQPLWEQRVAL-PKGRTELERLVDVDGDPVVDGGQVYAVSY----------QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEEEcc-CCCEeeeecccc-CCCCCchhhhhccCCccEEECCEEEEEEc----------CCEEEEEECCCCcEEEee
Confidence 35566653 444455433211 111 1 12334556788888642 2458999998774 654
No 117
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.45 E-value=1.6 Score=46.42 Aligned_cols=182 Identities=20% Similarity=0.284 Sum_probs=105.0
Q ss_pred eEEEEECCCCc--EEEecCCCCCCCCCcCcE--EEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCC
Q 001895 151 DVHCYDVLTNK--WSRITPFGEPPTPRAAHV--ATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPG 226 (999)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g~~P~pR~~hs--a~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~ 226 (999)
.+.++|+.+++ |+.-.. .+..+.. .+..++.+|+..+ ...+++||..+....|+.-. +
T Consensus 4 ~l~~~d~~tG~~~W~~~~~-----~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~-----~- 65 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLG-----PGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL-----P- 65 (238)
T ss_dssp EEEEEETTTTEEEEEEECS-----SSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC-----S-
T ss_pred EEEEEECCCCCEEEEEECC-----CCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec-----c-
Confidence 67888987765 877321 1122222 3346788888843 26899999988766788764 2
Q ss_pred CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEE-cccCCCCCCCccceEEEEEeCCEEEEEeccCCCCC
Q 001895 227 PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRK-LEPEGEGPPPCMYATASARSDGLLLLCGGRDASSV 305 (999)
Q Consensus 227 ~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~-v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~ 305 (999)
.+......+.++ .+|+..+. +.+++||..+....|+. ...... ..........+.++.+|+...
T Consensus 66 ~~~~~~~~~~~~-~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------ 130 (238)
T PF13360_consen 66 GPISGAPVVDGG-RVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPP--AGVRSSSSPAVDGDRLYVGTS------ 130 (238)
T ss_dssp SCGGSGEEEETT-EEEEEETT------SEEEEEETTTSCEEEEEEE-SSCT--CSTB--SEEEEETTEEEEEET------
T ss_pred ccccceeeeccc-ccccccce------eeeEecccCCcceeeeeccccccc--cccccccCceEecCEEEEEec------
Confidence 222222455565 78776521 27999999998889994 443221 112333344444777777643
Q ss_pred CcccEEEEecCCCCeEEEEECCCCCCCC-------cceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCe--EE
Q 001895 306 PLASAYGLAKHRDGRWEWAIAPGVSPSP-------RYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV--WC 376 (999)
Q Consensus 306 ~~~d~~~~~~~~~~~W~w~~~~g~~P~~-------R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~--W~ 376 (999)
...++.++.. +|.-.|.......+.. ......++.++.+|+..+.. .+..+|.++++ |.
T Consensus 131 -~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g----------~~~~~d~~tg~~~w~ 198 (238)
T PF13360_consen 131 -SGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG----------RVVAVDLATGEKLWS 198 (238)
T ss_dssp -CSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS----------SEEEEETTTTEEEEE
T ss_pred -cCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC----------eEEEEECCCCCEEEE
Confidence 2346667654 4455666544332211 11234444568888876531 25566999997 74
Q ss_pred E
Q 001895 377 D 377 (999)
Q Consensus 377 ~ 377 (999)
.
T Consensus 199 ~ 199 (238)
T PF13360_consen 199 K 199 (238)
T ss_dssp E
T ss_pred e
Confidence 3
No 118
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.44 E-value=0.0057 Score=69.90 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=45.2
Q ss_pred CCeEEEecCC-C-----------CHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCC-CChHHHHHHHHH----hhhc
Q 001895 698 APIKIFGDLH-G-----------QFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG-QHSLETITLLLA----LKVE 760 (999)
Q Consensus 698 ~~i~vvGDiH-G-----------~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~----lk~~ 760 (999)
.+++.++|+| | +...|.++++.+.-...+ -+|+.||++|+. +.+.+++.++.. +...
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD------~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~ 74 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGIT------TWIQLGDTFDVRKAITQNTMNFVREKIFDLLKE 74 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCC------EEEECCcccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3688999999 4 223445555544322222 688899999985 455555444433 2122
Q ss_pred CCCCEEEecCCcccc
Q 001895 761 YPNNVHLIRGNHEAA 775 (999)
Q Consensus 761 ~P~~v~llrGNHE~~ 775 (999)
.+-.|++|.||||..
T Consensus 75 ~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 75 AGITLHVLVGNHDMY 89 (340)
T ss_pred CCCeEEEEccCCCcc
Confidence 345799999999984
No 119
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.40 E-value=0.0065 Score=64.49 Aligned_cols=26 Identities=8% Similarity=0.087 Sum_probs=20.7
Q ss_pred eCHHHHHHHHHHcCCcEEEEeccccc
Q 001895 882 FGPDRVMEFCNNNDLQLIVRAHECVM 907 (999)
Q Consensus 882 fg~~~~~~fl~~~~l~~iiR~H~~~~ 907 (999)
.....+.+.++..+.+.+|-||.=..
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~ 201 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRP 201 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 34566777888999999999997554
No 120
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.36 E-value=0.0099 Score=64.15 Aligned_cols=69 Identities=26% Similarity=0.328 Sum_probs=43.9
Q ss_pred CeEEEecCCCC------------HHHHHHHHHHhCCC--CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCC
Q 001895 699 PIKIFGDLHGQ------------FGDLMRLFDEYGSP--STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNN 764 (999)
Q Consensus 699 ~i~vvGDiHG~------------~~~L~~il~~~g~~--~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~ 764 (999)
++.+++|||=. ...|.++++.+... ..+ -+|++||+++.|.. +....+.++..+..-.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d------~vi~~GDl~~~~~~--~~~~~~~~~l~~~~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPD------LVLVTGDLTDDGSP--ESYERLRELLAALPIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCC------EEEECccCCCCCCH--HHHHHHHHHHhhcCCC
Confidence 47899999944 34567777765432 222 58899999998753 2222222222222456
Q ss_pred EEEecCCcccc
Q 001895 765 VHLIRGNHEAA 775 (999)
Q Consensus 765 v~llrGNHE~~ 775 (999)
++.++||||..
T Consensus 73 ~~~v~GNHD~~ 83 (240)
T cd07402 73 VYLLPGNHDDR 83 (240)
T ss_pred EEEeCCCCCCH
Confidence 99999999974
No 121
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=96.30 E-value=0.096 Score=57.98 Aligned_cols=73 Identities=27% Similarity=0.335 Sum_probs=49.8
Q ss_pred CeEEEecCCCC------HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHh--hhcCCCCEEEecC
Q 001895 699 PIKIFGDLHGQ------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLAL--KVEYPNNVHLIRG 770 (999)
Q Consensus 699 ~i~vvGDiHG~------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~l--k~~~P~~v~llrG 770 (999)
.|..|+|+|-- ...+..+++.+.....+ -+|+.||+.++|. .+-+..+..+ +...+..+++++|
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D------~~v~tGDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~vpG 73 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPD------LLVVTGDLTNDGE--PEEYRRLKELLARLELPAPVIVVPG 73 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCC------EEEEccCcCCCCC--HHHHHHHHHHHhhccCCCceEeeCC
Confidence 57889999977 34556666776643333 6899999999963 2222222222 2366778999999
Q ss_pred Cccccchhh
Q 001895 771 NHEAADINA 779 (999)
Q Consensus 771 NHE~~~~~~ 779 (999)
|||.+..+.
T Consensus 74 NHD~~~~~~ 82 (301)
T COG1409 74 NHDARVVNG 82 (301)
T ss_pred CCcCCchHH
Confidence 999976654
No 122
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.00047 Score=76.43 Aligned_cols=208 Identities=9% Similarity=-0.119 Sum_probs=138.2
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhhcccc
Q 001895 732 IDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLP 811 (999)
Q Consensus 732 ~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP 811 (999)
...|+|+++++++.+.++.+-+.+..++.|-.+-..++++|+. .++++.++.-.-.......+|+..++.+..++
T Consensus 49 latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~-----~~~~R~~LVlp~l~S~riyvid~~~ep~~~~l 123 (476)
T KOG0918|consen 49 LATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGD-----SSFKRRYLVLPSLNSGRIYVIDVKTEPRKPSL 123 (476)
T ss_pred eeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccC-----cchhhhheeecccccCceEEEEeccCcCccce
Confidence 3789999999999999999999999999988889999999943 45566666555555556778899999999999
Q ss_pred eeEEEcCcEEEecCCccCcccCHHHhhhccCCcccCCCCceeeecccCCCCCCCC--CCCCccCCCCCCceeeCHH--HH
Q 001895 812 LAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDS--VEGLRPNARGPGLVTFGPD--RV 887 (999)
Q Consensus 812 laa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~--~~~~~~n~rg~~~~~fg~~--~~ 887 (999)
+..+.. +++|.||++.|...+...+.++.-...-+.. ...+. |-++.+.+. ..-|. .++.. ..||-| ..
T Consensus 124 ~k~i~~-~il~~~~l~~Pht~hcla~g~v~vs~lGd~~--gn~kg-~f~llD~~~~~k~tw~--~~~~~-p~~gyDfwyq 196 (476)
T KOG0918|consen 124 EKTIDP-DILEKTGLACPHTSHCLASGNVMVSCLGDAE--GNAKG-GFLLLDSDFNEKGTWE--KPGHS-PLFGYDFWYQ 196 (476)
T ss_pred eeeech-hhHhhcCCcCCcccccccCCCeeEEeecccc--cCCcC-CeEEecCccceecccc--cCCCc-cccccceeec
Confidence 997766 9999999999987766655533211111111 01111 333322110 11121 11211 222222 23
Q ss_pred HHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCC--ceEEeEEecc
Q 001895 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD--LVVVPKLIHP 953 (999)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~y~~~~~n~ga~l~~~~~--~~~~~~~~~~ 953 (999)
-.++.....+.+.+.|...-.++..+.++ ++.|+..-|.-...|.+..+-++.+ +.++.+.+|-
T Consensus 197 pr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~ 262 (476)
T KOG0918|consen 197 PRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHN 262 (476)
T ss_pred cccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCccceeEEecCCCCcceEEeeeccC
Confidence 34566667777888887654444556666 8889999998888899999988875 2334444443
No 123
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.16 E-value=0.01 Score=64.88 Aligned_cols=71 Identities=25% Similarity=0.302 Sum_probs=45.8
Q ss_pred CeEEEecCC-CC-----------HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHH----HHHHHhhhcCC
Q 001895 699 PIKIFGDLH-GQ-----------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETI----TLLLALKVEYP 762 (999)
Q Consensus 699 ~i~vvGDiH-G~-----------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl----~ll~~lk~~~P 762 (999)
+++.++|+| |. +..|.++++.+.-...+ .+|+.||++|+..-+.+.. .+|..|+...|
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D------~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~ 75 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQID------ALLVAGDVFDTANPPAEAQELFNAFFRNLSDANP 75 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 588999999 32 23344455443222222 6889999999987665443 34445544433
Q ss_pred CCEEEecCCcccc
Q 001895 763 NNVHLIRGNHEAA 775 (999)
Q Consensus 763 ~~v~llrGNHE~~ 775 (999)
-.|+++.||||..
T Consensus 76 i~v~~i~GNHD~~ 88 (253)
T TIGR00619 76 IPIVVISGNHDSA 88 (253)
T ss_pred ceEEEEccCCCCh
Confidence 5799999999984
No 124
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=96.14 E-value=0.028 Score=62.69 Aligned_cols=37 Identities=8% Similarity=0.151 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHcCCcEEEEeccccccceEEecCCeEE
Q 001895 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLI 919 (999)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~i 919 (999)
....+.+.|+++++++++-||.-..+.+....+++++
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~ 217 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV 217 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec
Confidence 3456778899999999999997654444334455543
No 125
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.12 E-value=0.008 Score=60.72 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=28.0
Q ss_pred eEEEeccccCCCCCh--H---HHHHHHHHhhhcC-CCCEEEecCCccccc
Q 001895 733 DYLFLGDYVDRGQHS--L---ETITLLLALKVEY-PNNVHLIRGNHEAAD 776 (999)
Q Consensus 733 ~~vfLGDyVDRG~~s--~---evl~ll~~lk~~~-P~~v~llrGNHE~~~ 776 (999)
.+||+||++|.+... . +.+..+.++.... ...++++.||||...
T Consensus 41 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 41 VVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 689999999987642 1 2222233322222 246999999999843
No 126
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.10 E-value=0.016 Score=62.22 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=41.4
Q ss_pred CCeEEEecCC-CCHHH----------------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh---HHHHHHHHHh
Q 001895 698 APIKIFGDLH-GQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS---LETITLLLAL 757 (999)
Q Consensus 698 ~~i~vvGDiH-G~~~~----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s---~evl~ll~~l 757 (999)
..+.||.|+| |--.. |.++.+.......+ .+|++||+.+..... -++..+|..+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d------~vIi~GDl~h~~~~~~~~~~~~~~l~~~ 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIE------ALIINGDLKHEFKKGLEWRFIREFIEVT 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCC------EEEEcCccccccCChHHHHHHHHHHHhc
Confidence 5689999999 53222 22233322222222 799999999765543 2223333332
Q ss_pred hhcCCCCEEEecCCccccc
Q 001895 758 KVEYPNNVHLIRGNHEAAD 776 (999)
Q Consensus 758 k~~~P~~v~llrGNHE~~~ 776 (999)
...+++++||||...
T Consensus 89 ----~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 89 ----FRDLILIRGNHDALI 103 (225)
T ss_pred ----CCcEEEECCCCCCcc
Confidence 247999999999743
No 127
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=95.99 E-value=0.017 Score=63.92 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=45.6
Q ss_pred CCeEEEecCC-C-----------CHHHHHHHHHHhCCC--CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCC
Q 001895 698 APIKIFGDLH-G-----------QFGDLMRLFDEYGSP--STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPN 763 (999)
Q Consensus 698 ~~i~vvGDiH-G-----------~~~~L~~il~~~g~~--~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~ 763 (999)
.+++.|+|+| . ....|.++++.+... ..+ -+|+.||++|.|. .+-+..+++.-.+.+.
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D------~vvitGDl~~~~~--~~~~~~~~~~l~~l~~ 86 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFD------LIVATGDLAQDHS--SEAYQHFAEGIAPLRK 86 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCC------EEEECCCCCCCCC--HHHHHHHHHHHhhcCC
Confidence 3588999999 1 145677777765321 112 5888999999874 3333333333333455
Q ss_pred CEEEecCCcccc
Q 001895 764 NVHLIRGNHEAA 775 (999)
Q Consensus 764 ~v~llrGNHE~~ 775 (999)
.++++.||||..
T Consensus 87 Pv~~v~GNHD~~ 98 (275)
T PRK11148 87 PCVWLPGNHDFQ 98 (275)
T ss_pred cEEEeCCCCCCh
Confidence 799999999973
No 128
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.98 E-value=1.5 Score=50.61 Aligned_cols=185 Identities=18% Similarity=0.252 Sum_probs=101.9
Q ss_pred ccCeEEEEECCCCc--EEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCC
Q 001895 148 ATADVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP 225 (999)
Q Consensus 148 ~~~dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P 225 (999)
....++.||..+++ |+.-... ....+.++.++.+|+..+ ...++.+|..+....|+.-... +..
T Consensus 113 ~~g~l~ald~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~-~~~ 178 (377)
T TIGR03300 113 EKGEVIALDAEDGKELWRAKLSS------EVLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVT-PAL 178 (377)
T ss_pred CCCEEEEEECCCCcEeeeeccCc------eeecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCC-Cce
Confidence 34578999998764 8754321 112233445677777543 2469999998866678865311 100
Q ss_pred CCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCC--CCCcc--ceEEEEEeCCEEEEEeccC
Q 001895 226 GPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEG--PPPCM--YATASARSDGLLLLCGGRD 301 (999)
Q Consensus 226 ~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~--P~~r~--~~~a~~~~~~~LyvfGG~~ 301 (999)
..+...+.++.++ .+| +|..++ .++.+|+.+....|+.-...+.. ...+. ......+.++.+|+... +
T Consensus 179 ~~~~~~sp~~~~~-~v~-~~~~~g-----~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-~ 250 (377)
T TIGR03300 179 TLRGSASPVIADG-GVL-VGFAGG-----KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-Q 250 (377)
T ss_pred eecCCCCCEEECC-EEE-EECCCC-----EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-C
Confidence 1122233445554 444 444333 68999998887789753221110 00000 11223445778777542 1
Q ss_pred CCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCC--eEEE
Q 001895 302 ASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG--VWCD 377 (999)
Q Consensus 302 ~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~--~W~~ 377 (999)
..++.++.. +++-.|....+. ..+.++.++++|+... ...++++|..++ .|..
T Consensus 251 ------g~l~a~d~~-tG~~~W~~~~~~------~~~p~~~~~~vyv~~~----------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 251 ------GRVAALDLR-SGRVLWKRDASS------YQGPAVDDNRLYVTDA----------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ------CEEEEEECC-CCcEEEeeccCC------ccCceEeCCEEEEECC----------CCeEEEEECCCCcEEEcc
Confidence 246677664 445556543211 1234566889998742 245999999877 4764
No 129
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=95.93 E-value=0.014 Score=68.31 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=43.6
Q ss_pred CeEEEecCC-CC-H------HH----HHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHH----HHHHHhhhcCC
Q 001895 699 PIKIFGDLH-GQ-F------GD----LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETI----TLLLALKVEYP 762 (999)
Q Consensus 699 ~i~vvGDiH-G~-~------~~----L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl----~ll~~lk~~~P 762 (999)
+++.++|+| |. + .+ |.++++.+.-...+ -+|+.||++|++..+.+.. .++..|+.. .
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D------~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~-~ 74 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVD------AIIVAGDIFDTGSPPSYARELYNRFVVNLQQT-G 74 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCC------EEEECCccccCCCCcHHHHHHHHHHHHHHHhc-C
Confidence 588999999 42 1 11 23333333222222 6889999999986654433 334445432 3
Q ss_pred CCEEEecCCccccc
Q 001895 763 NNVHLIRGNHEAAD 776 (999)
Q Consensus 763 ~~v~llrGNHE~~~ 776 (999)
-.|+++.||||...
T Consensus 75 ~~v~~I~GNHD~~~ 88 (407)
T PRK10966 75 CQLVVLAGNHDSVA 88 (407)
T ss_pred CcEEEEcCCCCChh
Confidence 46999999999753
No 130
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=95.90 E-value=0.024 Score=61.66 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=39.0
Q ss_pred EEEecCC--CCH---HHHHHHHHHhCCCCCCCCccceeEEEeccccCCCC-----C-------h----HHHHHHHHHhhh
Q 001895 701 KIFGDLH--GQF---GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQ-----H-------S----LETITLLLALKV 759 (999)
Q Consensus 701 ~vvGDiH--G~~---~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~-----~-------s----~evl~ll~~lk~ 759 (999)
++|+|+| +.. ..+..+++.+...... ......+|++||++|+.. . . .++..+|-+|..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~-~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 80 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDS-ASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPS 80 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCccc-ccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhccc
Confidence 6899999 432 2223444433211110 000117889999999731 0 1 123334444432
Q ss_pred cCCCCEEEecCCccccc
Q 001895 760 EYPNNVHLIRGNHEAAD 776 (999)
Q Consensus 760 ~~P~~v~llrGNHE~~~ 776 (999)
.-.|+++.||||...
T Consensus 81 --~~~v~~ipGNHD~~~ 95 (243)
T cd07386 81 --HIKIIIIPGNHDAVR 95 (243)
T ss_pred --CCeEEEeCCCCCccc
Confidence 246999999999853
No 131
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=95.81 E-value=0.025 Score=59.45 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=30.0
Q ss_pred eEEEeccccCCCCC---hHHHHHHHHHhhhcCCCCEEEecCCcc
Q 001895 733 DYLFLGDYVDRGQH---SLETITLLLALKVEYPNNVHLIRGNHE 773 (999)
Q Consensus 733 ~~vfLGDyVDRG~~---s~evl~ll~~lk~~~P~~v~llrGNHE 773 (999)
.+|++||+++.+.. +.+.+..++.......-.++++.||||
T Consensus 44 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 44 LVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred EEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 68999999997765 355665555544433456899999999
No 132
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=95.57 E-value=0.028 Score=60.64 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=26.2
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccc
Q 001895 733 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (999)
-+|+.||+++++... +....+..|+.. |..++++.||||.
T Consensus 44 ~viiaGDl~~~~~~~-~~~~~l~~l~~l-~~~v~~V~GNHD~ 83 (232)
T cd07393 44 IVLIPGDISWAMKLE-EAKLDLAWIDAL-PGTKVLLKGNHDY 83 (232)
T ss_pred EEEEcCCCccCCChH-HHHHHHHHHHhC-CCCeEEEeCCccc
Confidence 577899999987643 333333333322 3358999999997
No 133
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=95.57 E-value=0.37 Score=52.84 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=20.9
Q ss_pred eCHHHHHHHHHHcCCcEEEEecc
Q 001895 882 FGPDRVMEFCNNNDLQLIVRAHE 904 (999)
Q Consensus 882 fg~~~~~~fl~~~~l~~iiR~H~ 904 (999)
-.++..++.|+..+-.+|.-||+
T Consensus 203 l~~~~s~~il~~~~P~~vfsGhd 225 (257)
T cd08163 203 LEPSLSEVILKAVQPVIAFSGDD 225 (257)
T ss_pred cCHHHHHHHHHhhCCcEEEecCC
Confidence 47899999999999999999996
No 134
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=95.39 E-value=0.93 Score=48.60 Aligned_cols=164 Identities=12% Similarity=0.125 Sum_probs=91.9
Q ss_pred CcEEEEecCCCCCceEEEeecCCCCCC---Ccc--cEEEEE---CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcc
Q 001895 201 EDLHVLDLTQQRPRWHRVVVQGPGPGP---RYG--HVMALV---GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (999)
Q Consensus 201 ~dv~vyD~~t~t~kW~~v~~~g~~P~~---R~~--h~~~v~---~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~ 272 (999)
..++++|+.|. +|..++. .+.+ ... .+.... ++=+++.+....+......+++|++.++ .|+.+.
T Consensus 14 ~~~~V~NP~T~--~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~--~Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTG--QSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSN--SWRTIE 86 (230)
T ss_pred CcEEEECCCCC--CEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCC--Cccccc
Confidence 47999999996 5888862 2221 111 111111 1114555544322223457899999999 999987
Q ss_pred cCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEE-EEECCCCCCCCcceeEEEEECCEEEEEcC
Q 001895 273 PEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWE-WAIAPGVSPSPRYQHAAVFVNARLHVSGG 351 (999)
Q Consensus 273 ~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~-w~~~~g~~P~~R~~hsav~~~~~L~V~GG 351 (999)
.... ....... .+..+|.||-+.-..... ....+..||..+. +|. +...+............+.++|+|.++..
T Consensus 87 ~~~~--~~~~~~~-~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E-~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 87 CSPP--HHPLKSR-GVCINGVLYYLAYTLKTN-PDYFIVSFDVSSE-RFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred cCCC--CccccCC-eEEECCEEEEEEEECCCC-CcEEEEEEEcccc-eEeeeeecCccccccccceEEEEECCEEEEEEe
Confidence 4321 1111222 456688888887543221 1235778888766 555 33332211111223456777899888765
Q ss_pred cCCCCCCcccCCeEEEEE-CCCCeEEEcccC
Q 001895 352 ALGGGRMVEDSSSVAVLD-TAAGVWCDTKSV 381 (999)
Q Consensus 352 ~~~~~~~~~~~~~v~vyD-~~t~~W~~v~~~ 381 (999)
..... .-+||+++ -...+|+++-..
T Consensus 162 ~~~~~-----~~~IWvl~d~~~~~W~k~~~i 187 (230)
T TIGR01640 162 KKDTN-----NFDLWVLNDAGKQEWSKLFTV 187 (230)
T ss_pred cCCCC-----cEEEEEECCCCCCceeEEEEE
Confidence 43211 25799986 446679986655
No 135
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.38 E-value=0.046 Score=59.95 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=21.3
Q ss_pred HHHHHHHcCCcEEEEeccccccceEEe
Q 001895 887 VMEFCNNNDLQLIVRAHECVMDGFERF 913 (999)
Q Consensus 887 ~~~fl~~~~l~~iiR~H~~~~~G~~~~ 913 (999)
+.+.|++.++++++-||.=...+.+..
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceee
Confidence 778899999999999998665554443
No 136
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.09 E-value=0.054 Score=63.06 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=52.8
Q ss_pred CCeEEEecCCCC------------HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhc-----
Q 001895 698 APIKIFGDLHGQ------------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVE----- 760 (999)
Q Consensus 698 ~~i~vvGDiHG~------------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~----- 760 (999)
.+|.+++|+|-- +..|.++++.+.-...+ -+|+.||+.|+..-|.+++..++.+-.+
T Consensus 4 mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD------~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~ 77 (405)
T TIGR00583 4 IRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVD------MILLGGDLFHENKPSRKSLYQVLRSLRLYCLGD 77 (405)
T ss_pred eEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHhhccC
Confidence 468999999932 45677777776433333 5888999999999998888655444332
Q ss_pred -------------------------------CCCCEEEecCCccccc
Q 001895 761 -------------------------------YPNNVHLIRGNHEAAD 776 (999)
Q Consensus 761 -------------------------------~P~~v~llrGNHE~~~ 776 (999)
..--||+|-||||...
T Consensus 78 ~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 78 KPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred CccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1236999999999965
No 137
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=94.99 E-value=3 Score=44.20 Aligned_cols=203 Identities=19% Similarity=0.214 Sum_probs=114.9
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEecccc--CCCCChHHHHHH--HHHhhhcCCCCEEEecCCcc
Q 001895 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYV--DRGQHSLETITL--LLALKVEYPNNVHLIRGNHE 773 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyV--DRG~~s~evl~l--l~~lk~~~P~~v~llrGNHE 773 (999)
.++..+.||||.+..|.++++.......+ -+++.||+. ++|+.- ++..+ +..++. +-..|+.+.||.|
T Consensus 4 mkil~vtDlHg~~~~~~k~~~~~~~~~~D------~lviaGDlt~~~~~~~~-~~~~~~~~e~l~~-~~~~v~avpGNcD 75 (226)
T COG2129 4 MKILAVTDLHGSEDSLKKLLNAAADIRAD------LLVIAGDLTYFHFGPKE-VAEELNKLEALKE-LGIPVLAVPGNCD 75 (226)
T ss_pred ceEEEEeccccchHHHHHHHHHHhhccCC------EEEEecceehhhcCchH-HHHhhhHHHHHHh-cCCeEEEEcCCCC
Confidence 56899999999999999999887644333 578899999 887643 22222 344442 2358999999988
Q ss_pred ccchhhhcCChHHHHHHhCCccchhhhhhhhhhhcccceeEEEcCcEEEecCCccCcc-c-----CHHHhhhccCC-ccc
Q 001895 774 AADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSI-N-----HVEQIENLQRP-ITM 846 (999)
Q Consensus 774 ~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~~~-~-----~~~~i~~i~rp-~~~ 846 (999)
...+-.. .+..+. .+.. -...+++--||-=||..+.- . +-++|....+- ++.
T Consensus 76 ~~~v~~~-------l~~~~~----~v~~----------~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~ 134 (226)
T COG2129 76 PPEVIDV-------LKNAGV----NVHG----------RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKK 134 (226)
T ss_pred hHHHHHH-------HHhccc----cccc----------ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhc
Confidence 7544221 111211 1111 11234444455557876642 1 23445443221 111
Q ss_pred CCCCceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHHHHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccc
Q 001895 847 EAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATN 926 (999)
Q Consensus 847 ~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~ 926 (999)
..+. .-.=++-.-|.. ...+ ++-| ...-|..++.+++++.+-.+.|.||==-..|++.-- =||+-.|.
T Consensus 135 ~~~~-~~Il~~HaPP~g-t~~d----~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG----~TivVNPG 202 (226)
T COG2129 135 ADNP-VNILLTHAPPYG-TLLD----TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIG----NTIVVNPG 202 (226)
T ss_pred ccCc-ceEEEecCCCCC-cccc----CCCC--ccccchHHHHHHHHHhCCceEEEeeecccccccccC----CeEEECCC
Confidence 1110 001112333332 1111 2333 123589999999999999999999844456665421 26776665
Q ss_pred cCCCCCCeEEEEEEcCC
Q 001895 927 YCGTANNAGAILVLGRD 943 (999)
Q Consensus 927 y~~~~~n~ga~l~~~~~ 943 (999)
-.+ .-..|++.+++.
T Consensus 203 ~~~--~g~yA~i~l~~~ 217 (226)
T COG2129 203 PLG--EGRYALIELEKE 217 (226)
T ss_pred Ccc--CceEEEEEecCc
Confidence 432 235688888777
No 138
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=94.97 E-value=0.045 Score=57.03 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=32.2
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHhhhcCC----CCEEEecCCccc
Q 001895 733 DYLFLGDYVDRGQHS--LETITLLLALKVEYP----NNVHLIRGNHEA 774 (999)
Q Consensus 733 ~~vfLGDyVDRG~~s--~evl~ll~~lk~~~P----~~v~llrGNHE~ 774 (999)
-+|||||++|.|+.. .|.+..+..++..|. -.++.|.||||.
T Consensus 45 ~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDI 92 (195)
T cd08166 45 IVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDI 92 (195)
T ss_pred EEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCc
Confidence 588999999999853 346777766664433 368899999997
No 139
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.93 E-value=0.092 Score=55.77 Aligned_cols=195 Identities=19% Similarity=0.237 Sum_probs=99.8
Q ss_pred EEecCCCC------HHHHHHHHHHhCCCCCCCCccceeEEEeccccC--CCCC-----hHHHHHHHHHhhhcCCCCEEEe
Q 001895 702 IFGDLHGQ------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVD--RGQH-----SLETITLLLALKVEYPNNVHLI 768 (999)
Q Consensus 702 vvGDiHG~------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVD--RG~~-----s~evl~ll~~lk~~~P~~v~ll 768 (999)
.|+|+|=. -+-|+++|+...- ..+ .+.+|||++| +|.. --+|...|..+. .-..+||.+
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad------~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a-~~G~~v~~i 73 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAA-QAD------ALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA-RKGTRVYYI 73 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccc-cCc------EEEEechhhhhhhcCCcccHHHHHHHHHHHHHH-hcCCeEEEe
Confidence 57888844 2344555554322 222 6889999998 3433 234555555443 335689999
Q ss_pred cCCccccchhhhcCChHHHHHHhCCccchhhhhhhhhhhcccceeEE---EcCcEEEecCCccCcccC------------
Q 001895 769 RGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAAL---IEKKIICMHGGIGRSINH------------ 833 (999)
Q Consensus 769 rGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~---i~~~il~vHgGi~~~~~~------------ 833 (999)
.||||. .+...++ ...| .+.-+|-..+ -+++++++||-.--....
T Consensus 74 ~GN~Df-ll~~~f~------~~~g-------------~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~ 133 (237)
T COG2908 74 HGNHDF-LLGKRFA------QEAG-------------GMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWA 133 (237)
T ss_pred cCchHH-HHHHHHH------hhcC-------------ceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccH
Confidence 999995 3322221 1112 1233443333 367999999976332100
Q ss_pred HHHhhhccCCcccCCCCceeeecccCCCCCCCCCCCCccCCCCCC--ceeeCHHHHHHHHHHcCCcEEEEeccccccceE
Q 001895 834 VEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPG--LVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 911 (999)
Q Consensus 834 ~~~i~~i~rp~~~~~~~~~~~dllWsDP~~~~~~~~~~~n~rg~~--~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 911 (999)
..++--+.+|+..- ..+..=+|+.-. |........ ..-..+.++.+-++++|++.+|.||.=.+..-.
T Consensus 134 ~~~~lflnl~l~~R---~ri~~k~r~~s~-------~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~ 203 (237)
T COG2908 134 WLQLLFLNLPLRVR---RRIAYKIRSLSS-------WAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN 203 (237)
T ss_pred HHHHHHHHhHHHHH---HHHHHHHHHhhH-------HhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhcc
Confidence 01111112222200 001111344331 111100000 122467788888999999999999976654443
Q ss_pred EecCCeEEEEecccccC--CCCCCeEEEEEEcCCc
Q 001895 912 RFAQGHLITLFSATNYC--GTANNAGAILVLGRDL 944 (999)
Q Consensus 912 ~~~~~~~iTvFSa~~y~--~~~~n~ga~l~~~~~~ 944 (999)
.- + ..|| |.--..++++.++.+.
T Consensus 204 i~--~--------~~yi~lGdW~~~~s~~~v~~~~ 228 (237)
T COG2908 204 IP--G--------ITYINLGDWVSEGSILEVDDGG 228 (237)
T ss_pred CC--C--------ceEEecCcchhcceEEEEecCc
Confidence 32 1 1232 2222457888887764
No 140
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=94.75 E-value=0.076 Score=55.26 Aligned_cols=65 Identities=18% Similarity=0.098 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChH-HHHHHHHHhhhcC---------------------C
Q 001895 705 DLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-ETITLLLALKVEY---------------------P 762 (999)
Q Consensus 705 DiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-evl~ll~~lk~~~---------------------P 762 (999)
|++|+=.=|.++++.+-..-.-+ .++||||++|.|--+- |-.....+++..+ .
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~Pd-----~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~ 98 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKPD-----AVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGK 98 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCC-----EEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCC
Confidence 44666666777777653322111 6889999999975332 3334444444333 1
Q ss_pred CCEEEecCCccc
Q 001895 763 NNVHLIRGNHEA 774 (999)
Q Consensus 763 ~~v~llrGNHE~ 774 (999)
-.+++|.||||.
T Consensus 99 i~~i~V~GNHDI 110 (193)
T cd08164 99 TPLINIAGNHDV 110 (193)
T ss_pred ceEEEECCcccC
Confidence 357899999998
No 141
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.59 E-value=14 Score=44.51 Aligned_cols=204 Identities=18% Similarity=0.205 Sum_probs=100.4
Q ss_pred ccCeEEEEECCCCc--EEEecCCCCC---CC------------CCcCcEEEEe--CCEEEEEcccCC-----------CC
Q 001895 148 ATADVHCYDVLTNK--WSRITPFGEP---PT------------PRAAHVATAV--GTMVVIQGGIGP-----------AG 197 (999)
Q Consensus 148 ~~~dv~~yD~~t~~--W~~l~~~g~~---P~------------pR~~hsa~~~--g~~iyv~GG~~~-----------~~ 197 (999)
....+++||..|++ |+.-.....+ |. +....+.++. ++.+|+-.|... ..
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 34678999998765 8764322111 10 1111223332 356666544220 12
Q ss_pred CCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEE-----ECCc--EEEEEccCCCCCCCCeEEEEECCCCCceEEE
Q 001895 198 LSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMAL-----VGQR--YLMAIGGNDGKRPLADVWALDTAAKPYEWRK 270 (999)
Q Consensus 198 ~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v-----~~~~--~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~ 270 (999)
...+.++.+|..+.+.+|..-....+.-.-+......+ +++. .++++|..++ .++.||..+....|+.
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G-----~l~ald~~tG~~~W~~ 327 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNG-----FFYVLDRTTGKLISAR 327 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCc-----eEEEEECCCCcEeeEe
Confidence 23457999999998778986431111100011111111 1221 2445555444 5999999999888986
Q ss_pred cccCCCCCCCccceEEEEEeCCEEEEEeccCCC-----------CCCcccEEEEecCCCCeEEEEECCCCCC------CC
Q 001895 271 LEPEGEGPPPCMYATASARSDGLLLLCGGRDAS-----------SVPLASAYGLAKHRDGRWEWAIAPGVSP------SP 333 (999)
Q Consensus 271 v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~-----------~~~~~d~~~~~~~~~~~W~w~~~~g~~P------~~ 333 (999)
-..... .....+.+|+-...... ......++.++.. +|+-.|....+... .+
T Consensus 328 ~~~~~~----------~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~-tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 328 PEVEQP----------MAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK-TGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred Eeeccc----------cccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCC-CCcEeeEeeCCccccccccCCc
Confidence 432100 01112556653211100 0112345566554 45666766544110 12
Q ss_pred cceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCe--EEE
Q 001895 334 RYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV--WCD 377 (999)
Q Consensus 334 R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~--W~~ 377 (999)
......++.++.||+. .. ...+++||.+|++ |+.
T Consensus 397 ~~~~~~~~~g~~v~~g-~~---------dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 397 HWGGSLATAGNLVFAG-AA---------DGYFRAFDATTGKELWKF 432 (488)
T ss_pred ccCcceEecCCeEEEE-CC---------CCeEEEEECCCCceeeEE
Confidence 2233445556666654 32 2348999998885 663
No 142
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.49 E-value=2.1 Score=47.55 Aligned_cols=113 Identities=14% Similarity=0.219 Sum_probs=71.4
Q ss_pred cCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEe-CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeec--CCCC
Q 001895 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ--GPGP 225 (999)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~--g~~P 225 (999)
-..+..||..+.+|..+... -.... +++... +++||+.|-+.-.+.....+-.||+.+.+ |+.+... ..+|
T Consensus 15 C~~lC~yd~~~~qW~~~g~~---i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ip 88 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG---ISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIP 88 (281)
T ss_pred CCEEEEEECCCCEeecCCCC---ceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCC
Confidence 45789999999999998643 11111 223333 66888888655444345678889999875 9888742 2456
Q ss_pred CCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEccc
Q 001895 226 GPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEP 273 (999)
Q Consensus 226 ~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~ 273 (999)
.+...-+....+...+|+.|... .-..-+.+||= . +|+.+..
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~dG--s--~W~~i~~ 130 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSA--NGSTFLMKYDG--S--SWSSIGS 130 (281)
T ss_pred CcEEEEEeeccCCceEEEeceec--CCCceEEEEcC--C--ceEeccc
Confidence 66543333333444688877752 22345667754 5 8999876
No 143
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.48 E-value=0.086 Score=52.80 Aligned_cols=68 Identities=18% Similarity=0.336 Sum_probs=49.5
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCcc
Q 001895 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHE 773 (999)
Q Consensus 701 ~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE 773 (999)
.|+||+||+++.+.+-++.+.-. .+.+ --+|++||+..-.... +-+.-++.=+.+.|--.|++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k--~gpF--d~~ic~Gdff~~~~~~-~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKK--KGPF--DALLCVGDFFGDDEDD-EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcc--cCCe--eEEEEecCccCCccch-hhHHHHhcCCccCCCCEEEECCCCC
Confidence 48999999999998888775321 2222 2578899999866655 3444444456677888999999998
No 144
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=94.27 E-value=0.081 Score=54.28 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=28.4
Q ss_pred eEEEeccccCCCCCh--HH---HHHHHHHhhhcC-----CCCEEEecCCccccc
Q 001895 733 DYLFLGDYVDRGQHS--LE---TITLLLALKVEY-----PNNVHLIRGNHEAAD 776 (999)
Q Consensus 733 ~~vfLGDyVDRG~~s--~e---vl~ll~~lk~~~-----P~~v~llrGNHE~~~ 776 (999)
.+||+||++|.+... .+ .+..+..+.... ...++++.||||...
T Consensus 48 ~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 48 VVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred EEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 689999999988743 22 233332322111 346999999999853
No 145
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=93.88 E-value=0.19 Score=53.57 Aligned_cols=77 Identities=25% Similarity=0.328 Sum_probs=46.0
Q ss_pred Ceeee-cCCeEEEecCCCCHHH----------------HHHHHHHh-CCCCCCCCccceeEEEeccccCCCCC-----hH
Q 001895 692 SVLQL-KAPIKIFGDLHGQFGD----------------LMRLFDEY-GSPSTAGDIAYIDYLFLGDYVDRGQH-----SL 748 (999)
Q Consensus 692 ~~l~~-~~~i~vvGDiHG~~~~----------------L~~il~~~-g~~~~~~~~~~~~~vfLGDyVDRG~~-----s~ 748 (999)
..+.+ ...+.||.|+|==|+. +.+.+..+ .....+ ++|+|||.-.-... ..
T Consensus 13 ~~~~l~~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~------~lIilGD~KH~~~~~~~~e~~ 86 (235)
T COG1407 13 GVLYLPLGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPK------RLIILGDLKHEFGKSLRQEKE 86 (235)
T ss_pred ceeEeccCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCC------EEEEcCccccccCccccccHH
Confidence 33443 4689999999954433 23333211 111112 79999999874433 34
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCccccch
Q 001895 749 ETITLLLALKVEYPNNVHLIRGNHEAADI 777 (999)
Q Consensus 749 evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (999)
|+..++-.++.. .++++|||||...-
T Consensus 87 ~~~~f~~~~~~~---evi~i~GNHD~~i~ 112 (235)
T COG1407 87 EVREFLELLDER---EVIIIRGNHDNGIE 112 (235)
T ss_pred HHHHHHHHhccC---cEEEEeccCCCccc
Confidence 555555444433 59999999998443
No 146
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.84 E-value=11 Score=45.42 Aligned_cols=112 Identities=16% Similarity=0.170 Sum_probs=61.5
Q ss_pred eEEEEECCCCc--EEEecCCC-CCCCC-CcCcEEEEeC-CEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCC
Q 001895 151 DVHCYDVLTNK--WSRITPFG-EPPTP-RAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP 225 (999)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g-~~P~p-R~~hsa~~~g-~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P 225 (999)
.++.+|..+.+ |+.-.... ....+ -.....++.+ ++||+... ...++.||..+....|..-......+
T Consensus 72 ~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~~ 144 (488)
T cd00216 72 ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVALDAETGKQVWKFGNNDQVPP 144 (488)
T ss_pred cEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEEECCCCCEeeeecCCCCcCc
Confidence 68889988764 88643321 00111 1122234445 67776432 25799999988767798653110000
Q ss_pred CCCcccEEEEECCcEEEEEccCCCC----CCCCeEEEEECCCCCceEEEc
Q 001895 226 GPRYGHVMALVGQRYLMAIGGNDGK----RPLADVWALDTAAKPYEWRKL 271 (999)
Q Consensus 226 ~~R~~h~~~v~~~~~Lyv~GG~~g~----~~~ndv~~yDl~s~~~~W~~v 271 (999)
.-....+.++.++ .+| +|..++. .....++.||..+....|+.-
T Consensus 145 ~~~i~ssP~v~~~-~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 145 GYTMTGAPTIVKK-LVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred ceEecCCCEEECC-EEE-EeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 1012233445554 555 4433221 234679999999988889764
No 147
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.62 E-value=0.15 Score=56.71 Aligned_cols=71 Identities=24% Similarity=0.232 Sum_probs=46.1
Q ss_pred CCeEEEecCCCCHHH--HHHHHHHhCCCCCCCCccceeEEEeccccCC-CCCh-HHHHHHHHHhhhcCCCCEEEecCCcc
Q 001895 698 APIKIFGDLHGQFGD--LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDR-GQHS-LETITLLLALKVEYPNNVHLIRGNHE 773 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~--L~~il~~~g~~~~~~~~~~~~~vfLGDyVDR-G~~s-~evl~ll~~lk~~~P~~v~llrGNHE 773 (999)
.+|+-+.|+|=.... ..+.+........+ -+++.|||+|+ .+.. -.++..|..|+.. -.+|.+.||||
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~D------livltGD~~~~~~~~~~~~~~~~L~~L~~~--~gv~av~GNHd 116 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAIANELPD------LIVLTGDYVDGDRPPGVAALALFLAKLKAP--LGVFAVLGNHD 116 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHHHhcCCC------EEEEEeeeecCCCCCCHHHHHHHHHhhhcc--CCEEEEecccc
Confidence 358999999977665 22222222221112 68899999996 5544 4455666666554 57999999998
Q ss_pred ccc
Q 001895 774 AAD 776 (999)
Q Consensus 774 ~~~ 776 (999)
...
T Consensus 117 ~~~ 119 (284)
T COG1408 117 YGV 119 (284)
T ss_pred ccc
Confidence 743
No 148
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.19 E-value=2.3 Score=48.73 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=73.0
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCC------cccE
Q 001895 237 GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP------LASA 310 (999)
Q Consensus 237 ~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~------~~d~ 310 (999)
.+.+|+..+.. ....+||..+. .=...+. .+.+...- .++..+++||+.......... .-++
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~--av~~~P~---l~~pk~~p-isv~VG~~LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTR--AVATGPR---LHSPKRCP-ISVSVGDKLYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCC--eEeccCC---CCCCCcce-EEEEeCCeEEEeeccCccccccCccceeEEE
Confidence 34478887654 34889999887 3333332 23334444 444447789999876443211 1123
Q ss_pred EEEec-----CCCCeEEEEECCCCCCCCcc-------eeEEEEE-CCEEEE-EcCcCCCCCCcccCCeEEEEECCCCeEE
Q 001895 311 YGLAK-----HRDGRWEWAIAPGVSPSPRY-------QHAAVFV-NARLHV-SGGALGGGRMVEDSSSVAVLDTAAGVWC 376 (999)
Q Consensus 311 ~~~~~-----~~~~~W~w~~~~g~~P~~R~-------~hsav~~-~~~L~V-~GG~~~~~~~~~~~~~v~vyD~~t~~W~ 376 (999)
+.+.. .....|.|...+.. |..+. -.+-+++ +..||| +-|.. .-.|.||+++.+|+
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~P-Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~~~~W~ 212 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPPP-PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTESHEWR 212 (342)
T ss_pred eccccccccccCCCcceEEcCCCC-CccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcCCccee
Confidence 33331 34568999998763 43332 2344455 667888 33221 23889999999999
Q ss_pred EcccC
Q 001895 377 DTKSV 381 (999)
Q Consensus 377 ~v~~~ 381 (999)
++...
T Consensus 213 ~~GdW 217 (342)
T PF07893_consen 213 KHGDW 217 (342)
T ss_pred eccce
Confidence 99765
No 149
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=93.05 E-value=0.16 Score=55.22 Aligned_cols=66 Identities=33% Similarity=0.379 Sum_probs=41.9
Q ss_pred CeEEEecCCCCH---------HHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChH-----HHHHHHHHhhhcCCCC
Q 001895 699 PIKIFGDLHGQF---------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-----ETITLLLALKVEYPNN 764 (999)
Q Consensus 699 ~i~vvGDiHG~~---------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-----evl~ll~~lk~~~P~~ 764 (999)
.|+.++|+||.+ ..|.++++...-...+ .-+|..||+++....+. .++..|-++. -.
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~-----~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g----~d 72 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENEN-----TLLLDAGDNFDGSPPSTATKGEANIELMNALG----YD 72 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCC-----eEEEeCCccCCCccchhccCCcHHHHHHHhcC----CC
Confidence 478899999887 4566666665432111 14567999999887643 4455554432 23
Q ss_pred EEEecCCccc
Q 001895 765 VHLIRGNHEA 774 (999)
Q Consensus 765 v~llrGNHE~ 774 (999)
++..||||.
T Consensus 73 -~~~~GNHe~ 81 (252)
T cd00845 73 -AVTIGNHEF 81 (252)
T ss_pred -EEeeccccc
Confidence 345599996
No 150
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.56 E-value=30 Score=42.18 Aligned_cols=112 Identities=16% Similarity=0.117 Sum_probs=63.6
Q ss_pred eEEEEECCCCc--EEEecCCCC--CC---CCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCC
Q 001895 151 DVHCYDVLTNK--WSRITPFGE--PP---TPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (999)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g~--~P---~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~ 223 (999)
.++.+|..|.+ |+.-..... .+ ......+.++.+++||+... ...++.+|..+....|..-. ..
T Consensus 80 ~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~W~~~~--~~ 150 (527)
T TIGR03075 80 RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVVWSKKN--GD 150 (527)
T ss_pred cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEEeeccc--cc
Confidence 68889988764 876432210 00 11122334566778776432 24699999988777787643 11
Q ss_pred CCC-CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcc
Q 001895 224 GPG-PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (999)
Q Consensus 224 ~P~-~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~ 272 (999)
... .....+-++.++ .+|+.........-..+..||.++....|+.-.
T Consensus 151 ~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 151 YKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 111 112233445666 666643222122345799999999887887653
No 151
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.66 E-value=34 Score=40.46 Aligned_cols=148 Identities=15% Similarity=0.122 Sum_probs=70.2
Q ss_pred CcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCC
Q 001895 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (999)
Q Consensus 201 ~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~ 279 (999)
..+|++|+.+. +...+. ..+..-. +...- ++.+|++....++ ..++|.+|+.+. ....+.....
T Consensus 226 ~~i~~~dl~~g--~~~~l~---~~~g~~~--~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~Lt~~~~--- 290 (435)
T PRK05137 226 PRVYLLDLETG--QRELVG---NFPGMTF--APRFSPDGRKVVMSLSQGG---NTDIYTMDLRSG--TTTRLTDSPA--- 290 (435)
T ss_pred CEEEEEECCCC--cEEEee---cCCCccc--CcEECCCCCEEEEEEecCC---CceEEEEECCCC--ceEEccCCCC---
Confidence 58999999875 355554 2222111 11222 3335554443333 368999999887 6666644321
Q ss_pred CccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCc
Q 001895 280 PCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMV 359 (999)
Q Consensus 280 ~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~ 359 (999)
.........+++-++|...... ...+|.++.... ..+..... ..+.......-+++.+++......
T Consensus 291 --~~~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~-~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~---- 356 (435)
T PRK05137 291 --IDTSPSYSPDGSQIVFESDRSG---SPQLYVMNADGS-NPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG---- 356 (435)
T ss_pred --ccCceeEcCCCCEEEEEECCCC---CCeEEEEECCCC-CeEEeecC----CCcccCeEECCCCCEEEEEEcCCC----
Confidence 1112233345554445432111 235677765432 22222111 111211112224444444322211
Q ss_pred ccCCeEEEEECCCCeEEEcc
Q 001895 360 EDSSSVAVLDTAAGVWCDTK 379 (999)
Q Consensus 360 ~~~~~v~vyD~~t~~W~~v~ 379 (999)
...++++|+.+..+..+.
T Consensus 357 --~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 357 --QFSIGVMKPDGSGERILT 374 (435)
T ss_pred --ceEEEEEECCCCceEecc
Confidence 246999999877665543
No 152
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=91.02 E-value=0.89 Score=44.99 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=28.5
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccc
Q 001895 733 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 776 (999)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~ 776 (999)
.+.+|||+.-.-..--+..+++-+| +.+++|++||||--.
T Consensus 48 ~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~ 87 (186)
T COG4186 48 VLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCH 87 (186)
T ss_pred eEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCc
Confidence 6889999997555444444444443 689999999999744
No 153
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=90.94 E-value=0.28 Score=51.66 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=43.8
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChH-------------------------HHHH
Q 001895 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-------------------------ETIT 752 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-------------------------evl~ 752 (999)
.+|..+.|.||+++.|.++.+.+.-...+ -+||+||++-....+- |.|.
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D------~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPD------AVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-S------EEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCC------EEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 46899999999999999998876433333 6899999997554333 3333
Q ss_pred HHHHhhhcCCCCEEEecCCccccch
Q 001895 753 LLLALKVEYPNNVHLIRGNHEAADI 777 (999)
Q Consensus 753 ll~~lk~~~P~~v~llrGNHE~~~~ 777 (999)
-+|..--..+--+++|.||||....
T Consensus 80 ~ff~~L~~~~~p~~~vPG~~Dap~~ 104 (255)
T PF14582_consen 80 KFFRILGELGVPVFVVPGNMDAPER 104 (255)
T ss_dssp HHHHHHHCC-SEEEEE--TTS-SHH
T ss_pred HHHHHHHhcCCcEEEecCCCCchHH
Confidence 3444334455679999999998543
No 154
>PLN02533 probable purple acid phosphatase
Probab=90.79 E-value=0.35 Score=57.07 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=39.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChH--H-HHHHHHHhhhcCCCCEEEecCCccc
Q 001895 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL--E-TITLLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~--e-vl~ll~~lk~~~P~~v~llrGNHE~ 774 (999)
-+++|+||+| +-......++.+.....+ -+|++||+++-+.+.- + ...++-.+.... -++.+.||||.
T Consensus 140 ~~f~v~GDlG-~~~~~~~tl~~i~~~~pD------~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~--P~m~~~GNHE~ 210 (427)
T PLN02533 140 IKFAVSGDLG-TSEWTKSTLEHVSKWDYD------VFILPGDLSYANFYQPLWDTFGRLVQPLASQR--PWMVTHGNHEL 210 (427)
T ss_pred eEEEEEEeCC-CCcccHHHHHHHHhcCCC------EEEEcCccccccchHHHHHHHHHHhhhHhhcC--ceEEeCccccc
Confidence 4589999995 322222333333221111 4788999998654321 1 223333333333 38899999998
Q ss_pred cc
Q 001895 775 AD 776 (999)
Q Consensus 775 ~~ 776 (999)
..
T Consensus 211 ~~ 212 (427)
T PLN02533 211 EK 212 (427)
T ss_pred cc
Confidence 64
No 155
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=89.41 E-value=0.54 Score=52.07 Aligned_cols=64 Identities=25% Similarity=0.261 Sum_probs=37.5
Q ss_pred CeEEEecCCCCHH----------------HHHHHHHHhCCCCCCCCccceeEEE--eccccCCCCCh-----------HH
Q 001895 699 PIKIFGDLHGQFG----------------DLMRLFDEYGSPSTAGDIAYIDYLF--LGDYVDRGQHS-----------LE 749 (999)
Q Consensus 699 ~i~vvGDiHG~~~----------------~L~~il~~~g~~~~~~~~~~~~~vf--LGDyVDRG~~s-----------~e 749 (999)
.|+.++|+||++. .|..+++...-... ..|+ .||+++..+.+ ..
T Consensus 2 ~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~-------~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~ 74 (277)
T cd07410 2 RILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENP-------NTLLIDNGDTIQGSPLADYYAKIEDGDPHP 74 (277)
T ss_pred eEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCC-------CeEEEeCCccCCccHHHHHhhhcccCCCCh
Confidence 4788999999973 35556655532211 2333 69999865422 22
Q ss_pred HHHHHHHhhhcCCCCEEEecCCccc
Q 001895 750 TITLLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 750 vl~ll~~lk~~~P~~v~llrGNHE~ 774 (999)
++..|-.+. --++..||||.
T Consensus 75 ~~~~ln~~g-----~d~~~lGNHe~ 94 (277)
T cd07410 75 MIAAMNALG-----YDAGTLGNHEF 94 (277)
T ss_pred HHHHHHhcC-----CCEEeecccCc
Confidence 444444442 12455699996
No 156
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=89.25 E-value=9.3 Score=43.78 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=70.3
Q ss_pred eCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCC-----CeEE
Q 001895 183 VGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPL-----ADVW 257 (999)
Q Consensus 183 ~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~-----ndv~ 257 (999)
.+++|+..+.. ..+.+||..+.. -...+ .++.+...-.++.+++ +||++......... ..++
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~a--v~~~P---~l~~pk~~pisv~VG~-~LY~m~~~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRA--VATGP---RLHSPKRCPISVSVGD-KLYAMDRSPFPEPAGRPDFPCFE 141 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCe--EeccC---CCCCCCcceEEEEeCC-eEEEeeccCccccccCccceeEE
Confidence 48899998765 348899998853 33332 3445555556667787 69999876432221 1444
Q ss_pred EE--E------CCCCCceEEEcccCCCCCCCccc---eEEEEEe-CCEEEE-EeccCCCCCCcccEEEEecCCCCeEEE
Q 001895 258 AL--D------TAAKPYEWRKLEPEGEGPPPCMY---ATASARS-DGLLLL-CGGRDASSVPLASAYGLAKHRDGRWEW 323 (999)
Q Consensus 258 ~y--D------l~s~~~~W~~v~~~~~~P~~r~~---~~a~~~~-~~~Lyv-fGG~~~~~~~~~d~~~~~~~~~~~W~w 323 (999)
++ + .....|.|+.+++.+.....+.. -++.+++ +..|+| .-|.. ...|.||..+. +|++
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~-~W~~ 213 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESH-EWRK 213 (342)
T ss_pred EeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCc-ceee
Confidence 55 3 24567899998764432111110 3333444 677888 33221 24889988866 4443
No 157
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=88.94 E-value=0.74 Score=52.98 Aligned_cols=57 Identities=32% Similarity=0.354 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh--HHHHHHHHHhhhcCCC----CEEEecCCccc
Q 001895 713 LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS--LETITLLLALKVEYPN----NVHLIRGNHEA 774 (999)
Q Consensus 713 L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s--~evl~ll~~lk~~~P~----~v~llrGNHE~ 774 (999)
|.+.|...-+.-.-+ -.+||||++|-|... -|--....++|..|+. .++.+.||||-
T Consensus 81 lrr~f~~~~~~lkPd-----vvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 81 LRRSFDMSQWRLKPD-----VVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred HHHHHHHHHhccCCC-----EEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 455665544332221 578899999988743 5556667777776765 68999999998
No 158
>PRK04792 tolB translocation protein TolB; Provisional
Probab=87.46 E-value=70 Score=38.07 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=74.2
Q ss_pred CcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCC
Q 001895 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (999)
Q Consensus 201 ~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~ 279 (999)
..+|++|+.+.. -..+. ..+..-. ....- ++.+|++....++ ..++|.+|+.+. +.+++.....
T Consensus 242 ~~L~~~dl~tg~--~~~lt---~~~g~~~--~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg--~~~~lt~~~~--- 306 (448)
T PRK04792 242 AEIFVQDIYTQV--REKVT---SFPGING--APRFSPDGKKLALVLSKDG---QPEIYVVDIATK--ALTRITRHRA--- 306 (448)
T ss_pred cEEEEEECCCCC--eEEec---CCCCCcC--CeeECCCCCEEEEEEeCCC---CeEEEEEECCCC--CeEECccCCC---
Confidence 579999998753 44443 2222111 22222 3335665544333 258999999988 7777754321
Q ss_pred CccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCc
Q 001895 280 PCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMV 359 (999)
Q Consensus 280 ~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~ 359 (999)
.........+++.++|...... ...+|.++..+. +++.....+.. .......-+++.+++.+....
T Consensus 307 --~~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g-~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~~g---- 372 (448)
T PRK04792 307 --IDTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASG-KVSRLTFEGEQ----NLGGSITPDGRSMIMVNRTNG---- 372 (448)
T ss_pred --CccceEECCCCCEEEEEECCCC---CceEEEEECCCC-CEEEEecCCCC----CcCeeECCCCCEEEEEEecCC----
Confidence 1112223345544444332111 246777776543 44433222211 111122224544444333221
Q ss_pred ccCCeEEEEECCCCeEEEcc
Q 001895 360 EDSSSVAVLDTAAGVWCDTK 379 (999)
Q Consensus 360 ~~~~~v~vyD~~t~~W~~v~ 379 (999)
...++++|+.+.++..+.
T Consensus 373 --~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 373 --KFNIARQDLETGAMQVLT 390 (448)
T ss_pred --ceEEEEEECCCCCeEEcc
Confidence 346999999999887664
No 159
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=86.72 E-value=69 Score=37.23 Aligned_cols=147 Identities=19% Similarity=0.194 Sum_probs=73.3
Q ss_pred CcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCC
Q 001895 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (999)
Q Consensus 201 ~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~ 279 (999)
..++++|+.+.. ...+. ..+.... +.+.. ++..|++....++ ..++|.+|+.+. ..+.+......
T Consensus 214 ~~i~v~d~~~g~--~~~~~---~~~~~~~--~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~--~~~~l~~~~~~-- 279 (417)
T TIGR02800 214 PEIYVQDLATGQ--REKVA---SFPGMNG--APAFSPDGSKLAVSLSKDG---NPDIYVMDLDGK--QLTRLTNGPGI-- 279 (417)
T ss_pred cEEEEEECCCCC--EEEee---cCCCCcc--ceEECCCCCEEEEEECCCC---CccEEEEECCCC--CEEECCCCCCC--
Confidence 579999998753 44443 1222111 12222 3335665543333 257999999887 66666543221
Q ss_pred CccceEEEEEeCCE-EEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEE-ECCEEEEEcCcCCCCC
Q 001895 280 PCMYATASARSDGL-LLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVF-VNARLHVSGGALGGGR 357 (999)
Q Consensus 280 ~r~~~~a~~~~~~~-LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~-~~~~L~V~GG~~~~~~ 357 (999)
... .....+++ |++.....+ ...+|.++.... .+......+ .+....++ -+++.+++......
T Consensus 280 --~~~-~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~-~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~~-- 344 (417)
T TIGR02800 280 --DTE-PSWSPDGKSIAFTSDRGG----SPQIYMMDADGG-EVRRLTFRG-----GYNASPSWSPDGDLIAFVHREGG-- 344 (417)
T ss_pred --CCC-EEECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEeecCC-----CCccCeEECCCCCEEEEEEccCC--
Confidence 111 12223554 444333222 235777765543 333222211 12222223 25666666544321
Q ss_pred CcccCCeEEEEECCCCeEEEccc
Q 001895 358 MVEDSSSVAVLDTAAGVWCDTKS 380 (999)
Q Consensus 358 ~~~~~~~v~vyD~~t~~W~~v~~ 380 (999)
...|+++|+.+..+..+..
T Consensus 345 ----~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 345 ----GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred ----ceEEEEEeCCCCCeEEccC
Confidence 3469999999987766543
No 160
>PRK03629 tolB translocation protein TolB; Provisional
Probab=86.01 E-value=81 Score=37.30 Aligned_cols=150 Identities=17% Similarity=0.112 Sum_probs=72.8
Q ss_pred CcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCC
Q 001895 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP 280 (999)
Q Consensus 201 ~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~ 280 (999)
..+|++|+.+.. -..+. ..+.. .......-++.+|++....++ ..++|.+|+.+. +.+++.....
T Consensus 223 ~~i~i~dl~~G~--~~~l~---~~~~~-~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg--~~~~lt~~~~---- 287 (429)
T PRK03629 223 SALVIQTLANGA--VRQVA---SFPRH-NGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASG--QIRQVTDGRS---- 287 (429)
T ss_pred cEEEEEECCCCC--eEEcc---CCCCC-cCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCC--CEEEccCCCC----
Confidence 579999987743 34433 22221 111111223335655443333 246999999887 6676654321
Q ss_pred ccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcc
Q 001895 281 CMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVE 360 (999)
Q Consensus 281 r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~ 360 (999)
.........+++.++|...... ...+|.++.... ........+ .........-+++.+++.+....
T Consensus 288 -~~~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g-~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g----- 353 (429)
T PRK03629 288 -NNTEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGG-APQRITWEG----SQNQDADVSSDGKFMVMVSSNGG----- 353 (429)
T ss_pred -CcCceEECCCCCEEEEEeCCCC---CceEEEEECCCC-CeEEeecCC----CCccCEEECCCCCEEEEEEccCC-----
Confidence 1122233445655555443221 235676665433 222222111 11111122224554444333221
Q ss_pred cCCeEEEEECCCCeEEEccc
Q 001895 361 DSSSVAVLDTAAGVWCDTKS 380 (999)
Q Consensus 361 ~~~~v~vyD~~t~~W~~v~~ 380 (999)
...++++|++++++..+..
T Consensus 354 -~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 354 -QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred -CceEEEEECCCCCeEEeCC
Confidence 2469999999999887763
No 161
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=85.94 E-value=1.9 Score=50.36 Aligned_cols=73 Identities=22% Similarity=0.197 Sum_probs=47.3
Q ss_pred CeEEEecCCCC-------------HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCC---
Q 001895 699 PIKIFGDLHGQ-------------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYP--- 762 (999)
Q Consensus 699 ~i~vvGDiHG~-------------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P--- 762 (999)
++..+.|+|=- +..|..+++.+.--..+ -+|+-||+.|+..-|.+++.++...-.+.-
T Consensus 2 kilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD------~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~ 75 (390)
T COG0420 2 KILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVD------FVLIAGDLFDTNNPSPRALKLFLEALRRLKDAG 75 (390)
T ss_pred eeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCC------EEEEccccccCCCCCHHHHHHHHHHHHHhccCC
Confidence 56778888833 23334444443222222 588899999999988888766554433322
Q ss_pred CCEEEecCCccccch
Q 001895 763 NNVHLIRGNHEAADI 777 (999)
Q Consensus 763 ~~v~llrGNHE~~~~ 777 (999)
--||+|.||||...-
T Consensus 76 Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 76 IPVVVIAGNHDSPSR 90 (390)
T ss_pred CcEEEecCCCCchhc
Confidence 269999999998653
No 162
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=84.89 E-value=1.8 Score=47.70 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCcEEEEecccc
Q 001895 884 PDRVMEFCNNNDLQLIVRAHECV 906 (999)
Q Consensus 884 ~~~~~~fl~~~~l~~iiR~H~~~ 906 (999)
...+.++++++++++++-||.-.
T Consensus 190 ~~~l~~l~~~~~v~~vl~GH~H~ 212 (277)
T cd07378 190 VDRLLPLLKKYKVDAYLSGHDHN 212 (277)
T ss_pred HHHHHHHHHHcCCCEEEeCCccc
Confidence 35788899999999999999654
No 163
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=84.83 E-value=6.1 Score=46.33 Aligned_cols=190 Identities=18% Similarity=0.205 Sum_probs=98.4
Q ss_pred CeEEEecCCC-CH----HHHHHHHHHhCCCCCCCCccceeEEE-eccccCC-C-----------CChHHHHHHHHHhhhc
Q 001895 699 PIKIFGDLHG-QF----GDLMRLFDEYGSPSTAGDIAYIDYLF-LGDYVDR-G-----------QHSLETITLLLALKVE 760 (999)
Q Consensus 699 ~i~vvGDiHG-~~----~~L~~il~~~g~~~~~~~~~~~~~vf-LGDyVDR-G-----------~~s~evl~ll~~lk~~ 760 (999)
.+.+++|+|= .. +.+.++++.++.+.. .-...+|+. -||.||- | .+-.|-+..+-.+.-.
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~--~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~ 304 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGD--LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQ 304 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcc--cccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhh
Confidence 4788999995 22 334444444443321 112235665 7799993 2 1223444455555444
Q ss_pred CCC--CEEEecCCccccchhhhc-CChHHHHHHhCCccchhhhhhhhhhhcccceeEEE-cCcEEEecCCccCcccCHHH
Q 001895 761 YPN--NVHLIRGNHEAADINALF-GFRIECIERMGERDGIWAWHRINRLFNWLPLAALI-EKKIICMHGGIGRSINHVEQ 836 (999)
Q Consensus 761 ~P~--~v~llrGNHE~~~~~~~~-gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i-~~~il~vHgGi~~~~~~~~~ 836 (999)
-|. .|++..||||..-...-. .|...... +|...+-.|-.=|...-+ +..+|..|| .+++|
T Consensus 305 vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~ks---------lf~~~n~~~v~NP~~~~l~G~~vL~~hG------~sidD 369 (481)
T COG1311 305 VPEHIKVFIMPGNHDAVRQALPQPHFPELIKS---------LFSLNNLLFVSNPALVSLHGVDVLIYHG------RSIDD 369 (481)
T ss_pred CCCCceEEEecCCCCccccccCCCCcchhhcc---------cccccceEecCCCcEEEECCEEEEEecC------CCHHH
Confidence 555 689999999986543322 23322222 222222111111333333 346777887 35555
Q ss_pred hhhccCCcccCCCC-------------ceeeecccCCCCCCCCCCCCccCCCCCCceeeCHHHHHHHHHHcCCcEEEEec
Q 001895 837 IENLQRPITMEAGS-------------IVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAH 903 (999)
Q Consensus 837 i~~i~rp~~~~~~~-------------~~~~dllWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H 903 (999)
|...-.......-. +..-+-+|.-|...| +| +++ ---++++-||
T Consensus 370 ii~~vP~~~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD---------------~l---VIe-----evPDv~~~Gh 426 (481)
T COG1311 370 IIKLVPGADYDSPLKAMEELLKRRHLAPTYGGTLPIAPETKD---------------YL---VIE-----EVPDVFHTGH 426 (481)
T ss_pred HHhhCCCCCccchHHHHHHHHHhcccCCCCCCccccccCCcC---------------ce---eec-----cCCcEEEEcc
Confidence 54432222211100 122334555554321 01 011 1145678899
Q ss_pred cccccceEEecCCeEEEEecccccCC
Q 001895 904 ECVMDGFERFAQGHLITLFSATNYCG 929 (999)
Q Consensus 904 ~~~~~G~~~~~~~~~iTvFSa~~y~~ 929 (999)
+-. .|+..+.+.++|-.++-+.+..
T Consensus 427 vh~-~g~~~y~gv~~vns~T~q~qTe 451 (481)
T COG1311 427 VHK-FGTGVYEGVNLVNSGTWQEQTE 451 (481)
T ss_pred ccc-cceeEEeccceEEeeeecchhc
Confidence 876 8899888888888888877654
No 164
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=84.36 E-value=85 Score=36.16 Aligned_cols=194 Identities=18% Similarity=0.245 Sum_probs=100.5
Q ss_pred eEEEEECCCCc--EEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCC
Q 001895 151 DVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (999)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R 228 (999)
.++.+|+.+.. |+...... .....-....-+++||+-...+ .+|+||..+.+..|..-... . .+
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~---~~~~~~~~~~~~G~i~~g~~~g-------~~y~ld~~~G~~~W~~~~~~---~-~~ 144 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGA---VAQLSGPILGSDGKIYVGSWDG-------KLYALDASTGTLVWSRNVGG---S-PY 144 (370)
T ss_pred cEEEEeCCCCcEEecccCcCc---ceeccCceEEeCCeEEEecccc-------eEEEEECCCCcEEEEEecCC---C-eE
Confidence 78889998876 87654310 0011111122256655554432 79999997666789887522 1 34
Q ss_pred cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcc
Q 001895 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLA 308 (999)
Q Consensus 229 ~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~ 308 (999)
+.-.+ ++.+..+|+.- .-+.++++|..+....|+.-...+ .+ ........+.++.+|+-... . ..
T Consensus 145 ~~~~~-v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~-~~--~~~~~~~~~~~~~vy~~~~~----~-~~ 209 (370)
T COG1520 145 YASPP-VVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP-LS--LSIYGSPAIASGTVYVGSDG----Y-DG 209 (370)
T ss_pred EecCc-EEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc-cc--cccccCceeecceEEEecCC----C-cc
Confidence 44443 33433555532 235789999998888998544332 11 12222222556777764221 1 12
Q ss_pred cEEEEecCCCCeEEEEECCCCCCCCcce--eEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCC--eEEEcc
Q 001895 309 SAYGLAKHRDGRWEWAIAPGVSPSPRYQ--HAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG--VWCDTK 379 (999)
Q Consensus 309 d~~~~~~~~~~~W~w~~~~g~~P~~R~~--hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~--~W~~v~ 379 (999)
..+.++.. +|+-.|...... +..+.. -...+.++.+++-||..... ....++++|..+. .|..-.
T Consensus 210 ~~~a~~~~-~G~~~w~~~~~~-~~~~~~~~~~~~~~~~~v~v~~~~~~~~----~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 210 ILYALNAE-DGTLKWSQKVSQ-TIGRTAISTTPAVDGGPVYVDGGVYAGS----YGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eEEEEEcc-CCcEeeeeeeec-ccCcccccccccccCceEEECCcEEEEe----cCCeEEEEEcCCCceEEEEec
Confidence 56666664 445566642211 111111 11344456666666631111 1344888887766 477644
No 165
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.53 E-value=22 Score=39.58 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=65.7
Q ss_pred CCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEE-eCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCC--
Q 001895 252 PLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASAR-SDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPG-- 328 (999)
Q Consensus 252 ~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~-~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g-- 328 (999)
....+..||..+. +|..+...-. ..-.+... .++.||+.|-.+-.......+-.|+.... +|....+
T Consensus 14 ~C~~lC~yd~~~~--qW~~~g~~i~-----G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~---~w~~~~~~~ 83 (281)
T PF12768_consen 14 PCPGLCLYDTDNS--QWSSPGNGIS-----GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ---TWSSLGGGS 83 (281)
T ss_pred CCCEEEEEECCCC--EeecCCCCce-----EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC---eeeecCCcc
Confidence 4678999999999 9999865522 22333333 47788888766544433445556666655 4544443
Q ss_pred --CCCCCcceeEEEEEC-CEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEccc
Q 001895 329 --VSPSPRYQHAAVFVN-ARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 380 (999)
Q Consensus 329 --~~P~~R~~hsav~~~-~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~ 380 (999)
..|.+-........+ +.+++.|.. ..+ ..-+..| +-.+|..+..
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g-----~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRS-ANG-----STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEecee-cCC-----CceEEEE--cCCceEeccc
Confidence 234443222222223 467777775 222 3446667 5779999877
No 166
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=83.39 E-value=1.1 Score=53.74 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCc----EEEEeccccc--cceE-EecCCeEEEE---ecccccCCCCCCeEEEEEEcCCceEEeEEec
Q 001895 883 GPDRVMEFCNNNDLQ----LIVRAHECVM--DGFE-RFAQGHLITL---FSATNYCGTANNAGAILVLGRDLVVVPKLIH 952 (999)
Q Consensus 883 g~~~~~~fl~~~~l~----~iiR~H~~~~--~G~~-~~~~~~~iTv---FSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~ 952 (999)
.++..++.|+..||+ .||-||.+|. +|=. ..++||++.| ||.. |....+ -|++-.|.+...+....-+
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TG-IAGYTLiyNS~gl~L~~H~ 584 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTG-IAGYTLIYNSYGLQLVAHQ 584 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccC-ccceEEEecCCcceeccCC
Confidence 577888899999999 9999999996 5644 4689999999 7765 544433 3444444444444444444
Q ss_pred cC
Q 001895 953 PL 954 (999)
Q Consensus 953 ~~ 954 (999)
|.
T Consensus 585 pF 586 (640)
T PF06874_consen 585 PF 586 (640)
T ss_pred CC
Confidence 43
No 167
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=83.32 E-value=1.7 Score=48.60 Aligned_cols=66 Identities=29% Similarity=0.364 Sum_probs=41.1
Q ss_pred CeEEEecCCCCHHH--------------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCC-h-----HHHHHHHHHhh
Q 001895 699 PIKIFGDLHGQFGD--------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-S-----LETITLLLALK 758 (999)
Q Consensus 699 ~i~vvGDiHG~~~~--------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-s-----~evl~ll~~lk 758 (999)
.|+.+.|+||++.. |..+++....... ..-+|..||+++..+. + ..++.+|-++.
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~-----~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g 76 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNP-----NSLFVSAGDLIGASPFESALLQDEPTIEALNAMG 76 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCC-----CeEEEeCCcccccccchhhcccCCcHHHHHHhhC
Confidence 47789999998653 5666666543211 1256779999986654 2 24555655553
Q ss_pred hcCCCCEEEecCCccc
Q 001895 759 VEYPNNVHLIRGNHEA 774 (999)
Q Consensus 759 ~~~P~~v~llrGNHE~ 774 (999)
. . .+..||||.
T Consensus 77 ~----D-a~t~GNHef 87 (288)
T cd07412 77 V----D-ASAVGNHEF 87 (288)
T ss_pred C----e-eeeeccccc
Confidence 2 2 355599996
No 168
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.68 E-value=43 Score=39.14 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=40.6
Q ss_pred EeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEEC
Q 001895 182 AVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDT 261 (999)
Q Consensus 182 ~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl 261 (999)
..++.++++|+-+ .-+-.+|+.+. .......|..-.-|++..+ -.++ +|++-||+||. +-.||+
T Consensus 120 ~~d~t~l~s~sDd------~v~k~~d~s~a---~v~~~l~~htDYVR~g~~~-~~~~-hivvtGsYDg~-----vrl~Dt 183 (487)
T KOG0310|consen 120 PQDNTMLVSGSDD------KVVKYWDLSTA---YVQAELSGHTDYVRCGDIS-PAND-HIVVTGSYDGK-----VRLWDT 183 (487)
T ss_pred ccCCeEEEecCCC------ceEEEEEcCCc---EEEEEecCCcceeEeeccc-cCCC-eEEEecCCCce-----EEEEEe
Confidence 3478999998742 23445666664 2344444444444544322 2333 79999999984 566777
Q ss_pred CCC
Q 001895 262 AAK 264 (999)
Q Consensus 262 ~s~ 264 (999)
.+.
T Consensus 184 R~~ 186 (487)
T KOG0310|consen 184 RSL 186 (487)
T ss_pred ccC
Confidence 766
No 169
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=82.61 E-value=76 Score=34.27 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=47.9
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEe--CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCC
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~ 227 (999)
+.++.||+.+.+....-..+ ..+ ...+.. ++.+|+.++. ...+++||+.+.. ....+ +..
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~-~~~~~------~~~ 114 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANED------DNLVTVIDIETRK-VLAEI------PVG 114 (300)
T ss_pred CeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCe-EEeEe------eCC
Confidence 36888999887765432221 111 222332 3466666542 2469999998742 11222 111
Q ss_pred CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 001895 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 228 R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~ 264 (999)
...++++...++.+++++..++ +.++.||..+.
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~ 147 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTY 147 (300)
T ss_pred CCcceEEECCCCCEEEEEecCC----CeEEEEeCCCC
Confidence 2223444444445666665432 24566788665
No 170
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=82.39 E-value=1e+02 Score=36.13 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=76.6
Q ss_pred CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCC
Q 001895 184 GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAA 263 (999)
Q Consensus 184 g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s 263 (999)
|...++++|.. .=+|.||+.+. +-+++.....++..-...-.+...+ .++++-|..| .++.+...|
T Consensus 269 G~~~i~~s~rr------ky~ysyDle~a--k~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G-----~I~lLhakT 334 (514)
T KOG2055|consen 269 GHSVIFTSGRR------KYLYSYDLETA--KVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNG-----HIHLLHAKT 334 (514)
T ss_pred CceEEEecccc------eEEEEeecccc--ccccccCCCCcccchhheeEecCCC-CeEEEcccCc-----eEEeehhhh
Confidence 44578888753 45889999885 4676654333442222222233444 4667777665 455666666
Q ss_pred CCceEEEc-ccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCe-EEEEECCCCCCCCcceeE-EE
Q 001895 264 KPYEWRKL-EPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGR-WEWAIAPGVSPSPRYQHA-AV 340 (999)
Q Consensus 264 ~~~~W~~v-~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~-W~w~~~~g~~P~~R~~hs-av 340 (999)
+ .|..- ...+ .....+....+.+||+.||. ..+|.++...+.. -.|....+. ++.+ +.
T Consensus 335 ~--eli~s~KieG-----~v~~~~fsSdsk~l~~~~~~-------GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~ 395 (514)
T KOG2055|consen 335 K--ELITSFKIEG-----VVSDFTFSSDSKELLASGGT-------GEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCI 395 (514)
T ss_pred h--hhhheeeecc-----EEeeEEEecCCcEEEEEcCC-------ceEEEEecCCcceEEEEeecCcc-----ceeeeee
Confidence 6 55322 1111 23333333445677887764 3577777665522 233333222 2222 23
Q ss_pred EECCEEEEEcCcCCCCCCcccCCeEEEEECCCC
Q 001895 341 FVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG 373 (999)
Q Consensus 341 ~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~ 373 (999)
..++.++.+|-.. .-|-+||..+.
T Consensus 396 S~ng~ylA~GS~~---------GiVNIYd~~s~ 419 (514)
T KOG2055|consen 396 SLNGSYLATGSDS---------GIVNIYDGNSC 419 (514)
T ss_pred cCCCceEEeccCc---------ceEEEeccchh
Confidence 3466666666432 23667775543
No 171
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=82.10 E-value=2.4 Score=46.43 Aligned_cols=65 Identities=23% Similarity=0.223 Sum_probs=38.6
Q ss_pred CeEEEecCCCCHH----------HHHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-----HHHHHHHHHhhhcCCC
Q 001895 699 PIKIFGDLHGQFG----------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETITLLLALKVEYPN 763 (999)
Q Consensus 699 ~i~vvGDiHG~~~----------~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~P~ 763 (999)
.|+-+.|+||++. .|..+++...-.+ ..-+|..||+++..+.+ ..++.+|-.+. -
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~------~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~ 71 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLD------NDLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----Y 71 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcC------CEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----C
Confidence 4678999999854 4556666653221 12566799999875533 23333333331 1
Q ss_pred CEEEecCCccc
Q 001895 764 NVHLIRGNHEA 774 (999)
Q Consensus 764 ~v~llrGNHE~ 774 (999)
.+ +..||||.
T Consensus 72 d~-~~~GNHef 81 (257)
T cd07408 72 DA-VTPGNHEF 81 (257)
T ss_pred cE-Eccccccc
Confidence 34 45699996
No 172
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=82.04 E-value=20 Score=41.60 Aligned_cols=130 Identities=14% Similarity=0.167 Sum_probs=71.6
Q ss_pred ccCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCC
Q 001895 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (999)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~ 227 (999)
.-.-+|.||+.+.+-.++.++...+.+-...=.+...+.++++-|.+ .-++++...+. .|..-- .++..
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~--eli~s~---KieG~ 346 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTK--ELITSF---KIEGV 346 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhh--hhhhee---eeccE
Confidence 44578999999999999987654442222222333344566665543 35677776664 364332 23333
Q ss_pred CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEc-ccCCCCCCCccceEEEEEeCCEEEEEeccC
Q 001895 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKL-EPEGEGPPPCMYATASARSDGLLLLCGGRD 301 (999)
Q Consensus 228 R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v-~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~ 301 (999)
-...+....+ ..||+.||.. .||+||+.++ .-... ...+. -..-+-|...++.++..|...
T Consensus 347 v~~~~fsSds-k~l~~~~~~G------eV~v~nl~~~--~~~~rf~D~G~----v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 347 VSDFTFSSDS-KELLASGGTG------EVYVWNLRQN--SCLHRFVDDGS----VHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred EeeEEEecCC-cEEEEEcCCc------eEEEEecCCc--ceEEEEeecCc----cceeeeeecCCCceEEeccCc
Confidence 3333333333 4788888753 7999999886 32221 12222 122223334567766666543
No 173
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=81.07 E-value=74 Score=33.13 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=75.2
Q ss_pred EEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeec-CCCCCCCcccEEEEECC-cEEEEEccCCCCCCCCeE
Q 001895 179 VATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ-GPGPGPRYGHVMALVGQ-RYLMAIGGNDGKRPLADV 256 (999)
Q Consensus 179 sa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~-g~~P~~R~~h~~~v~~~-~~Lyv~GG~~g~~~~ndv 256 (999)
+++...+++|+|-| +.+|+++.......-..+... +.+|. ... ++..... +++|+|-| +..
T Consensus 11 A~~~~~g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~ID-Aa~~~~~~~~~yfFkg-------~~y 73 (194)
T cd00094 11 AVTTLRGELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVD-AAFERPDTGKIYFFKG-------DKY 73 (194)
T ss_pred eEEEeCCEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCC-Ccc-EEEEECCCCEEEEECC-------CEE
Confidence 34445689999977 367887764211011111110 01222 222 3333332 58999976 368
Q ss_pred EEEECCCCCceEEE---cccCCCCCCCccceEEEEEe-CCEEEEEeccCCCCCCcccEEEEecCCCCeE----------E
Q 001895 257 WALDTAAKPYEWRK---LEPEGEGPPPCMYATASARS-DGLLLLCGGRDASSVPLASAYGLAKHRDGRW----------E 322 (999)
Q Consensus 257 ~~yDl~s~~~~W~~---v~~~~~~P~~r~~~~a~~~~-~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W----------~ 322 (999)
|+||..+. .+.- +...+.++.+..-.+|.... ++++|+|.|. ..|.|+.... +. .
T Consensus 74 w~~~~~~~--~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~-~v~~~yP~~i~~~ 142 (194)
T cd00094 74 WVYTGKNL--EPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQ-KMDPGYPKLIETD 142 (194)
T ss_pred EEEcCccc--ccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCc-cccCCCCcchhhc
Confidence 88887642 2211 11112211112233444443 6899999772 3455543222 00 1
Q ss_pred EEECCCCCCCCcceeEEEEEC-CEEEEEcCcCCCCCCcccCCeEEEEECCCCe
Q 001895 323 WAIAPGVSPSPRYQHAAVFVN-ARLHVSGGALGGGRMVEDSSSVAVLDTAAGV 374 (999)
Q Consensus 323 w~~~~g~~P~~R~~hsav~~~-~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~ 374 (999)
|. +. | ..-.++.... +++|+|-| +..|.||..+.+
T Consensus 143 w~---g~-p--~~idaa~~~~~~~~yfF~g-----------~~y~~~d~~~~~ 178 (194)
T cd00094 143 FP---GV-P--DKVDAAFRWLDGYYYFFKG-----------DQYWRFDPRSKE 178 (194)
T ss_pred CC---Cc-C--CCcceeEEeCCCcEEEEEC-----------CEEEEEeCccce
Confidence 21 11 2 2123333344 88999966 358999988776
No 174
>PRK04922 tolB translocation protein TolB; Provisional
Probab=79.90 E-value=1.3e+02 Score=35.39 Aligned_cols=147 Identities=19% Similarity=0.240 Sum_probs=72.2
Q ss_pred CcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCC
Q 001895 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP 280 (999)
Q Consensus 201 ~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~ 280 (999)
..+|++|+.+.. ...+. ..+.. .......-++.+|++....++ ..++|.+|+.+. ...++.....
T Consensus 228 ~~l~~~dl~~g~--~~~l~---~~~g~-~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g--~~~~lt~~~~---- 292 (433)
T PRK04922 228 SAIYVQDLATGQ--RELVA---SFRGI-NGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSR--QLTRLTNHFG---- 292 (433)
T ss_pred cEEEEEECCCCC--EEEec---cCCCC-ccCceECCCCCEEEEEEeCCC---CceEEEEECCCC--CeEECccCCC----
Confidence 579999998753 44443 22221 111111223335555433333 258999999887 6566543221
Q ss_pred ccceEEEEEeCCEEEEEec-cCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEE-CC-EEEEEcCcCCCCC
Q 001895 281 CMYATASARSDGLLLLCGG-RDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFV-NA-RLHVSGGALGGGR 357 (999)
Q Consensus 281 r~~~~a~~~~~~~LyvfGG-~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~-~~-~L~V~GG~~~~~~ 357 (999)
.........+++.++|.. ..+ ...+|.++.... .++.....+ .+....++. ++ .|++..+. + +
T Consensus 293 -~~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~-~- 358 (433)
T PRK04922 293 -IDTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGG-SAERLTFQG-----NYNARASVSPDGKKIAMVHGS-G-G- 358 (433)
T ss_pred -CccceEECCCCCEEEEEECCCC----CceEEEEECCCC-CeEEeecCC-----CCccCEEECCCCCEEEEEECC-C-C-
Confidence 111223344555555543 222 235677665433 343332221 112222222 44 45444332 1 1
Q ss_pred CcccCCeEEEEECCCCeEEEccc
Q 001895 358 MVEDSSSVAVLDTAAGVWCDTKS 380 (999)
Q Consensus 358 ~~~~~~~v~vyD~~t~~W~~v~~ 380 (999)
...++++|+.++++..+..
T Consensus 359 ----~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 359 ----QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred ----ceeEEEEECCCCCeEECCC
Confidence 2369999999998886653
No 175
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=79.87 E-value=3.5 Score=45.39 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=20.6
Q ss_pred EEEeccccCCCCChH-----HHHHHHHHhhhcCCCCEEEecCCccc
Q 001895 734 YLFLGDYVDRGQHSL-----ETITLLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 734 ~vfLGDyVDRG~~s~-----evl~ll~~lk~~~P~~v~llrGNHE~ 774 (999)
+|..||+++....+. .++.+|-++ + --.+. ||||.
T Consensus 55 ~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g-~da~~-GNHef 94 (264)
T cd07411 55 LLDGGDTWQGSGEALYTRGQAMVDALNAL----G-VDAMV-GHWEF 94 (264)
T ss_pred EEeCCCccCCChHHhhcCChhHHHHHHhh----C-CeEEe-ccccc
Confidence 456999998765432 334444443 2 22334 99996
No 176
>PRK01742 tolB translocation protein TolB; Provisional
Probab=76.49 E-value=1.7e+02 Score=34.59 Aligned_cols=140 Identities=17% Similarity=0.142 Sum_probs=65.9
Q ss_pred CcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCC
Q 001895 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (999)
Q Consensus 201 ~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~ 279 (999)
..+|++|+.+.. -..+. ..+.. ......- ++.+|++....++. .++|.+|+.+. ....+.....
T Consensus 228 ~~i~i~dl~tg~--~~~l~---~~~g~--~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~--~~~~lt~~~~--- 292 (429)
T PRK01742 228 SQLVVHDLRSGA--RKVVA---SFRGH--NGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGG--TPSQLTSGAG--- 292 (429)
T ss_pred cEEEEEeCCCCc--eEEEe---cCCCc--cCceeECCCCCEEEEEEecCCc---EEEEEEECCCC--CeEeeccCCC---
Confidence 469999997742 34443 22211 1122233 33244443333332 46999999877 6666543221
Q ss_pred CccceEEEEEeCCEEEEEec-cCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCC
Q 001895 280 PCMYATASARSDGLLLLCGG-RDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRM 358 (999)
Q Consensus 280 ~r~~~~a~~~~~~~LyvfGG-~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~ 358 (999)
.........+++.++|.. .++. ..+|.++.... .-... . . .. +. ....-+++.+++.+.
T Consensus 293 --~~~~~~wSpDG~~i~f~s~~~g~----~~I~~~~~~~~-~~~~l--~-~--~~-~~-~~~SpDG~~ia~~~~------ 352 (429)
T PRK01742 293 --NNTEPSWSPDGQSILFTSDRSGS----PQVYRMSASGG-GASLV--G-G--RG-YS-AQISADGKTLVMING------ 352 (429)
T ss_pred --CcCCEEECCCCCEEEEEECCCCC----ceEEEEECCCC-CeEEe--c-C--CC-CC-ccCCCCCCEEEEEcC------
Confidence 122233334555444433 2222 35666655432 11211 1 1 11 11 111224444444332
Q ss_pred cccCCeEEEEECCCCeEEEcc
Q 001895 359 VEDSSSVAVLDTAAGVWCDTK 379 (999)
Q Consensus 359 ~~~~~~v~vyD~~t~~W~~v~ 379 (999)
+.++++|+.+++|..+.
T Consensus 353 ----~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 353 ----DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred ----CCEEEEECCCCCeEEec
Confidence 24778999999887654
No 177
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=76.15 E-value=1.4e+02 Score=34.76 Aligned_cols=224 Identities=13% Similarity=0.103 Sum_probs=103.3
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeCCEEEEE-cccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCC
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQ-GGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~-GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R 228 (999)
..+|.+|+.+.+-++|.... .....+-..+.-++.+|.+ .+ ..++.+|+.+.. =..+- ..|..-
T Consensus 60 ~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~~~~~Yv~~~--------~~l~~vdL~T~e--~~~vy---~~p~~~ 124 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDDRALYYVKNG--------RSLRRVDLDTLE--ERVVY---EVPDDW 124 (386)
T ss_dssp -EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETT--------TEEEEEETTT----EEEEE---E--TTE
T ss_pred cceEEEEcccCEEEECccCC--CCCccceEEecCCCeEEEEECC--------CeEEEEECCcCc--EEEEE---ECCccc
Confidence 47899999999999997641 1222222222224466544 33 478888988853 44444 445444
Q ss_pred cccEEEEECCcEEEEEccC----C--------------CCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEe
Q 001895 229 YGHVMALVGQRYLMAIGGN----D--------------GKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARS 290 (999)
Q Consensus 229 ~~h~~~v~~~~~Lyv~GG~----~--------------g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~ 290 (999)
.+....+.+...-.++|=. + -....+.+...|+.+. +.+.+-.... =..|.-..-.
T Consensus 125 ~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG--~~~~v~~~~~----wlgH~~fsP~ 198 (386)
T PF14583_consen 125 KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG--ERKVVFEDTD----WLGHVQFSPT 198 (386)
T ss_dssp EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-----EEEEEEETT
T ss_pred ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC--ceeEEEecCc----cccCcccCCC
Confidence 4444433332222222211 1 1223567888888887 7666644322 1234444444
Q ss_pred CCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCE-EEEEcCcCCCCCCcccCCeEEEEE
Q 001895 291 DGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNAR-LHVSGGALGGGRMVEDSSSVAVLD 369 (999)
Q Consensus 291 ~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~-L~V~GG~~~~~~~~~~~~~v~vyD 369 (999)
+..+++|-=..........+|..+....+.|. +....+....+|---..+|. |+..+...+.. ..-|..||
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~---v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~-----~~~i~~~d 270 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK---VHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQ-----DFWIAGYD 270 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EE---SS---TTEEEEEEEE-TTSS-EEEEEEETTT-------EEEEEE-
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCccee---eecCCCCcccccccccCCCCEEEEEeecCCCC-----ceEEEeeC
Confidence 55666663222222233478888866553333 22222344455555555554 33333322221 23488899
Q ss_pred CCCCeEEEcccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECCEEEEEcCCC
Q 001895 370 TAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR 425 (999)
Q Consensus 370 ~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~ 425 (999)
++|.+=+.+..+ +++.|-....+++|+|==|.+
T Consensus 271 ~~t~~~~~~~~~-----------------------p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 271 PDTGERRRLMEM-----------------------PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTT--EEEEEEE------------------------SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCCceEEEeC-----------------------CceeeeEEcCCCCEEEecCCC
Confidence 999865545444 578888888888988865543
No 178
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=76.14 E-value=62 Score=35.51 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=28.7
Q ss_pred eEEEeccccCCCCC------------------hHHHHHHHHHhhhcCCC--CEEEecCCccccchhh
Q 001895 733 DYLFLGDYVDRGQH------------------SLETITLLLALKVEYPN--NVHLIRGNHEAADINA 779 (999)
Q Consensus 733 ~~vfLGDyVDRG~~------------------s~evl~ll~~lk~~~P~--~v~llrGNHE~~~~~~ 779 (999)
++|+.||.|+.-.. ..|-+..+-.+-..-+. .|.++.||||-.....
T Consensus 45 rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~l 111 (257)
T cd07387 45 RLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANHSL 111 (257)
T ss_pred EEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCcccccC
Confidence 68899999995422 23333333222222222 6899999999876654
No 179
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=74.63 E-value=1.8e+02 Score=35.58 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=69.9
Q ss_pred EEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCC--CC---CCCcccEEEEECCcEEEEEccCCCCCCC
Q 001895 179 VATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP--GP---GPRYGHVMALVGQRYLMAIGGNDGKRPL 253 (999)
Q Consensus 179 sa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~--~P---~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ 253 (999)
+-++.++.||+.... ..++.+|..+....|+.-..... .+ ......+.++.++ ++|+. ..+
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~-~v~v~-t~d----- 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDG-KVFFG-TLD----- 129 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECC-EEEEE-cCC-----
Confidence 345668899986542 36999999987678986541110 01 0011223345555 67753 323
Q ss_pred CeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCe--EEEEECC
Q 001895 254 ADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGR--WEWAIAP 327 (999)
Q Consensus 254 ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~--W~w~~~~ 327 (999)
..++++|..+....|+.-..... ......++-++.++++|+...... ......++.|+.. +|+ |++...+
T Consensus 130 g~l~ALDa~TGk~~W~~~~~~~~--~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~-TG~~lW~~~~~p 201 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNGDYK--AGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAK-TGKLVWRRYTVP 201 (527)
T ss_pred CEEEEEECCCCCEEeeccccccc--ccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECC-CCceeEeccCcC
Confidence 36999999998889986432111 001112233455787776432111 1123456666664 334 4444443
No 180
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=74.05 E-value=58 Score=37.97 Aligned_cols=97 Identities=11% Similarity=0.103 Sum_probs=48.8
Q ss_pred ccCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEe----CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCC
Q 001895 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV----GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (999)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~----g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~ 223 (999)
...++|++.+.++.--.+- -+.+.+.+.+ ++++++-||.+ ..+.+|++..- -..-.. .
T Consensus 101 i~g~lYlWelssG~LL~v~-------~aHYQ~ITcL~fs~dgs~iiTgskD------g~V~vW~l~~l---v~a~~~--~ 162 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNVL-------SAHYQSITCLKFSDDGSHIITGSKD------GAVLVWLLTDL---VSADND--H 162 (476)
T ss_pred ccCcEEEEEeccccHHHHH-------HhhccceeEEEEeCCCcEEEecCCC------ccEEEEEEEee---cccccC--C
Confidence 4458899988887533221 1333444443 45888888853 35666665431 000010 1
Q ss_pred CCCCC---cccEEEEECCcEEEEEccCCCCCC----CCeEEEEECCCC
Q 001895 224 GPGPR---YGHVMALVGQRYLMAIGGNDGKRP----LADVWALDTAAK 264 (999)
Q Consensus 224 ~P~~R---~~h~~~v~~~~~Lyv~GG~~g~~~----~ndv~~yDl~s~ 264 (999)
.|.|+ ..|++.+.+ .-+=+||.++.-+ -..+-+||+...
T Consensus 163 ~~~p~~~f~~HtlsITD--l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITD--LQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred CccceeeeccCcceeEE--EEecCCCccceEEEecCCceEEEEEeccc
Confidence 23333 366665543 2333455543222 235666777665
No 181
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=73.75 E-value=5.8 Score=44.32 Aligned_cols=45 Identities=29% Similarity=0.376 Sum_probs=29.7
Q ss_pred eEEEeccccCCCCChH--H------HHHHHHHhhhcCCC-CEEEecCCccccch
Q 001895 733 DYLFLGDYVDRGQHSL--E------TITLLLALKVEYPN-NVHLIRGNHEAADI 777 (999)
Q Consensus 733 ~~vfLGDyVDRG~~s~--e------vl~ll~~lk~~~P~-~v~llrGNHE~~~~ 777 (999)
-+||.||+|+.+.... + .-.+...++..+|. .|+.+.||||....
T Consensus 71 fii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~ 124 (296)
T cd00842 71 FILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPV 124 (296)
T ss_pred EEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcc
Confidence 4788999998875431 1 22233344545554 69999999998654
No 182
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=73.13 E-value=36 Score=32.85 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=56.1
Q ss_pred EECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEe
Q 001895 235 LVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLA 314 (999)
Q Consensus 235 v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~ 314 (999)
.+++ .+|...-. .....+-+.+||+.+. +|+.+..+ ..+.........+..+|+|-++.-........-++|.+.
T Consensus 3 cinG-vly~~a~~-~~~~~~~IvsFDv~~E--~f~~i~~P-~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 3 CING-VLYWLAWS-EDSDNNVIVSFDVRSE--KFRFIKLP-EDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred EECc-EEEeEEEE-CCCCCcEEEEEEcCCc--eEEEEEee-eeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee
Confidence 3454 56665544 3344678999999999 88877654 112223445555666888888765443323467899998
Q ss_pred cCCCCeEEEEEC
Q 001895 315 KHRDGRWEWAIA 326 (999)
Q Consensus 315 ~~~~~~W~w~~~ 326 (999)
+....+|.....
T Consensus 78 D~~k~~Wsk~~~ 89 (129)
T PF08268_consen 78 DYEKQEWSKKHI 89 (129)
T ss_pred ccccceEEEEEE
Confidence 887788875533
No 183
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=72.86 E-value=1.9e+02 Score=33.55 Aligned_cols=142 Identities=17% Similarity=0.206 Sum_probs=72.8
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCc
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~ 229 (999)
..++++|+.++....+.... ......+....++.|++..... ...++|++|+.+. +...+... ....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~---~~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~--~~~~l~~~---~~~~- 280 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP---GMNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGK--QLTRLTNG---PGID- 280 (417)
T ss_pred cEEEEEECCCCCEEEeecCC---CCccceEECCCCCEEEEEECCC----CCccEEEEECCCC--CEEECCCC---CCCC-
Confidence 57999999988777665431 1111111111234565543321 1257999999875 35555321 1111
Q ss_pred ccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCccc
Q 001895 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLAS 309 (999)
Q Consensus 230 ~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d 309 (999)
......-++.+|++.....+ ...+|.+|+.+. .+..+..... .........+++.+++...... ...
T Consensus 281 ~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~--~~~~l~~~~~-----~~~~~~~spdg~~i~~~~~~~~---~~~ 347 (417)
T TIGR02800 281 TEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGG--EVRRLTFRGG-----YNASPSWSPDGDLIAFVHREGG---GFN 347 (417)
T ss_pred CCEEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEeecCCC-----CccCeEECCCCCEEEEEEccCC---ceE
Confidence 01111123335555443332 248999999887 7777654322 1222333446777777665432 345
Q ss_pred EEEEecCC
Q 001895 310 AYGLAKHR 317 (999)
Q Consensus 310 ~~~~~~~~ 317 (999)
++.++..+
T Consensus 348 i~~~d~~~ 355 (417)
T TIGR02800 348 IAVMDLDG 355 (417)
T ss_pred EEEEeCCC
Confidence 66776654
No 184
>PRK00178 tolB translocation protein TolB; Provisional
Probab=72.41 E-value=2e+02 Score=33.70 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=71.3
Q ss_pred CcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCC
Q 001895 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (999)
Q Consensus 201 ~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~ 279 (999)
..+|++|+.+.. -..+. ..+. ........ ++.+|++..-.++ ..++|++|+.+. .++.+.....
T Consensus 223 ~~l~~~~l~~g~--~~~l~---~~~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~~~--- 287 (430)
T PRK00178 223 PRIFVQNLDTGR--REQIT---NFEG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASR--QLSRVTNHPA--- 287 (430)
T ss_pred CEEEEEECCCCC--EEEcc---CCCC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCC--CeEEcccCCC---
Confidence 479999998753 44443 1111 11122222 3334554332222 258999999988 7777654321
Q ss_pred CccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEE-ECC-EEEEEcCcCCCCC
Q 001895 280 PCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVF-VNA-RLHVSGGALGGGR 357 (999)
Q Consensus 280 ~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~-~~~-~L~V~GG~~~~~~ 357 (999)
.........+++-++|..... ....+|.++.... .+......+ .+.....+ -++ .|++.... ..
T Consensus 288 --~~~~~~~spDg~~i~f~s~~~---g~~~iy~~d~~~g-~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~-~~-- 353 (430)
T PRK00178 288 --IDTEPFWGKDGRTLYFTSDRG---GKPQIYKVNVNGG-RAERVTFVG-----NYNARPRLSADGKTLVMVHRQ-DG-- 353 (430)
T ss_pred --CcCCeEECCCCCEEEEEECCC---CCceEEEEECCCC-CEEEeecCC-----CCccceEECCCCCEEEEEEcc-CC--
Confidence 111222333554444433211 1235677665433 343332211 11111222 244 44444322 11
Q ss_pred CcccCCeEEEEECCCCeEEEccc
Q 001895 358 MVEDSSSVAVLDTAAGVWCDTKS 380 (999)
Q Consensus 358 ~~~~~~~v~vyD~~t~~W~~v~~ 380 (999)
...++++|+.+++++.+..
T Consensus 354 ----~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 ----NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ----ceEEEEEECCCCCEEEccC
Confidence 2359999999998887754
No 185
>PRK05137 tolB translocation protein TolB; Provisional
Probab=71.39 E-value=2.2e+02 Score=33.63 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=92.3
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCc
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~ 229 (999)
..+|.+|+.++..+.+.... ..-...+..-.+.+|++....+ + ..++|++|+.+.. ..++. ..+.. .
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~---g~~~~~~~SPDG~~la~~~~~~--g--~~~Iy~~d~~~~~--~~~Lt---~~~~~-~ 292 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP---GMTFAPRFSPDGRKVVMSLSQG--G--NTDIYTMDLRSGT--TTRLT---DSPAI-D 292 (435)
T ss_pred CEEEEEECCCCcEEEeecCC---CcccCcEECCCCCEEEEEEecC--C--CceEEEEECCCCc--eEEcc---CCCCc-c
Confidence 57999999999888776431 1111111111234555443321 1 2589999998753 45443 11111 1
Q ss_pred ccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCccc
Q 001895 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLAS 309 (999)
Q Consensus 230 ~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d 309 (999)
......-++.+|++....++ ..++|++|+.+. ..+.+..... .........+++.+++...... ...
T Consensus 293 ~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~--~~~~lt~~~~-----~~~~~~~SpdG~~ia~~~~~~~---~~~ 359 (435)
T PRK05137 293 TSPSYSPDGSQIVFESDRSG---SPQLYVMNADGS--NPRRISFGGG-----RYSTPVWSPRGDLIAFTKQGGG---QFS 359 (435)
T ss_pred CceeEcCCCCEEEEEECCCC---CCeEEEEECCCC--CeEEeecCCC-----cccCeEECCCCCEEEEEEcCCC---ceE
Confidence 11111223334544332222 257999999877 5666543211 1222233345555555433222 234
Q ss_pred EEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEccc
Q 001895 310 AYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 380 (999)
Q Consensus 310 ~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~ 380 (999)
++.++.... ..... ..+ .....-...-+++++++-....... ....++++|+....-..+..
T Consensus 360 i~~~d~~~~-~~~~l-t~~----~~~~~p~~spDG~~i~~~~~~~~~~---~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 360 IGVMKPDGS-GERIL-TSG----FLVEGPTWAPNGRVIMFFRQTPGSG---GAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred EEEEECCCC-ceEec-cCC----CCCCCCeECCCCCEEEEEEccCCCC---CcceEEEEECCCCceEEccC
Confidence 566665332 22211 111 1111112222555555543322110 02469999998887776653
No 186
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=71.36 E-value=8.7 Score=35.37 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=31.9
Q ss_pred ChhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeee
Q 001895 645 NSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQL 696 (999)
Q Consensus 645 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~~~~~e~~~l~~ 696 (999)
.++++.+|+++-+.+ .|....+..|+.++.++|+++|++++|
T Consensus 54 ~efv~~mie~FK~~K----------~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 54 LEFVKAMIEWFKNQK----------KLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp HHHHHHHHHHHHCT--------------HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred HHHHHHHHHHHHhCC----------CccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 367888999875432 467888999999999999999999986
No 187
>PRK04792 tolB translocation protein TolB; Provisional
Probab=70.65 E-value=2.3e+02 Score=33.67 Aligned_cols=140 Identities=16% Similarity=0.215 Sum_probs=72.7
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEE--eCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCC
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATA--VGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~--~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~ 227 (999)
..+|.+|+.+++-+.+... +. ...+.+. .++.|++....+ + ..++|++|+.+. +..++... . .
T Consensus 242 ~~L~~~dl~tg~~~~lt~~---~g--~~~~~~wSPDG~~La~~~~~~--g--~~~Iy~~dl~tg--~~~~lt~~---~-~ 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF---PG--INGAPRFSPDGKKLALVLSKD--G--QPEIYVVDIATK--ALTRITRH---R-A 306 (448)
T ss_pred cEEEEEECCCCCeEEecCC---CC--CcCCeeECCCCCEEEEEEeCC--C--CeEEEEEECCCC--CeEECccC---C-C
Confidence 4699999998877776543 11 1112222 244565543321 1 257999999875 36665421 1 1
Q ss_pred CcccEEEE-ECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCC
Q 001895 228 RYGHVMAL-VGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP 306 (999)
Q Consensus 228 R~~h~~~v-~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~ 306 (999)
.....+. -++.+|++....++ ..++|.+|+.+. +++.+...+. .........+++.++|.+....
T Consensus 307 -~~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g--~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~~~~g--- 372 (448)
T PRK04792 307 -IDTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASG--KVSRLTFEGE-----QNLGGSITPDGRSMIMVNRTNG--- 372 (448)
T ss_pred -CccceEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEEecCCC-----CCcCeeECCCCCEEEEEEecCC---
Confidence 1111222 23335555443333 258999999888 7887753222 1112233445555555444322
Q ss_pred cccEEEEecCCC
Q 001895 307 LASAYGLAKHRD 318 (999)
Q Consensus 307 ~~d~~~~~~~~~ 318 (999)
...+|.++..+.
T Consensus 373 ~~~I~~~dl~~g 384 (448)
T PRK04792 373 KFNIARQDLETG 384 (448)
T ss_pred ceEEEEEECCCC
Confidence 245677775543
No 188
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=70.23 E-value=1.7e+02 Score=33.31 Aligned_cols=173 Identities=17% Similarity=0.145 Sum_probs=82.3
Q ss_pred cCcEEEEe--CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCc-ccEEEEECCcEEEEEccCCCCCC
Q 001895 176 AAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY-GHVMALVGQRYLMAIGGNDGKRP 252 (999)
Q Consensus 176 ~~hsa~~~--g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~-~h~~~v~~~~~Lyv~GG~~g~~~ 252 (999)
..|.+... ++.+|+.. . -.+.+++|+++..+.+....... ..|.+-. .|.+..-++.++||..-.
T Consensus 145 h~H~v~~~pdg~~v~v~d-l-----G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~----- 212 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPD-L-----GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL----- 212 (345)
T ss_dssp CEEEEEE-TTSSEEEEEE-T-----TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT-----
T ss_pred cceeEEECCCCCEEEEEe-c-----CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC-----
Confidence 34555555 34666653 1 13689999998765345553322 2233222 343433344589998654
Q ss_pred CCeEEEEECCCCCceEEEcccCCCCC---CCccceEEEEEe--CCEEEEEeccCCCCCCcccEEEEec-CCCCeEEEEEC
Q 001895 253 LADVWALDTAAKPYEWRKLEPEGEGP---PPCMYATASARS--DGLLLLCGGRDASSVPLASAYGLAK-HRDGRWEWAIA 326 (999)
Q Consensus 253 ~ndv~~yDl~s~~~~W~~v~~~~~~P---~~r~~~~a~~~~--~~~LyvfGG~~~~~~~~~d~~~~~~-~~~~~W~w~~~ 326 (999)
.+.+.+|++......|+.+......| ......+.+.+. +..||+.-. . .+.+..|+. ..+++.++...
T Consensus 213 s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-~-----~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 213 SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-G-----SNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-T-----TTEEEEEEECTTTTTEEEEEE
T ss_pred CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-c-----CCEEEEEEEecCCCceEEEEE
Confidence 35677777762222665553322221 112233333333 345666432 2 233444544 23444444333
Q ss_pred C---CCCCCCcceeEEEE--ECCEEEEEcCcCCCCCCcccCCeEEEE--ECCCCeEEEccc
Q 001895 327 P---GVSPSPRYQHAAVF--VNARLHVSGGALGGGRMVEDSSSVAVL--DTAAGVWCDTKS 380 (999)
Q Consensus 327 ~---g~~P~~R~~hsav~--~~~~L~V~GG~~~~~~~~~~~~~v~vy--D~~t~~W~~v~~ 380 (999)
. +. .|| .+++ -+..|||.+.. .+.|.+| |.+++.+..+..
T Consensus 287 ~~~~G~--~Pr---~~~~s~~g~~l~Va~~~---------s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 287 VPTGGK--FPR---HFAFSPDGRYLYVANQD---------SNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEESSS--SEE---EEEE-TTSSEEEEEETT---------TTEEEEEEEETTTTEEEEEEE
T ss_pred EeCCCC--Ccc---EEEEeCCCCEEEEEecC---------CCeEEEEEEeCCCCcEEEecc
Confidence 2 22 122 2222 24456664332 2345544 678999998764
No 189
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=70.12 E-value=6.7 Score=52.50 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=39.2
Q ss_pred CeEEEecCCCCHHHH---HHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-----HHHHHHHHHhhhcCCCCEEEecC
Q 001895 699 PIKIFGDLHGQFGDL---MRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETITLLLALKVEYPNNVHLIRG 770 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L---~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~P~~v~llrG 770 (999)
.|+.+.|+||.+..+ ..+++...-...+ .-+|..||+++..+.+ ..++.+|-++. --++..|
T Consensus 662 ~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg-----~d~~~~G 731 (1163)
T PRK09419 662 TILHTNDFHGHLDGAAKRVTKIKEVKEENPN-----TILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG-----YDASTFG 731 (1163)
T ss_pred EEEEEeecccCCCCHHHHHHHHHHHHhhCCC-----eEEEecCCCCCCcchhhhcCChHHHHHHhCcC-----CCEEEec
Confidence 478899999986444 4444443211111 1233489999987644 24455554442 2356899
Q ss_pred Cccc
Q 001895 771 NHEA 774 (999)
Q Consensus 771 NHE~ 774 (999)
|||.
T Consensus 732 NHEf 735 (1163)
T PRK09419 732 NHEF 735 (1163)
T ss_pred cccc
Confidence 9997
No 190
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=69.71 E-value=1.5e+02 Score=30.93 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=53.7
Q ss_pred CEEEEEcccCCCCCCcCcEEEEecCCCCCce-EEEeecCCCCC--CCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEE
Q 001895 185 TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRW-HRVVVQGPGPG--PRYGHVMALVG-QRYLMAIGGNDGKRPLADVWALD 260 (999)
Q Consensus 185 ~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW-~~v~~~g~~P~--~R~~h~~~v~~-~~~Lyv~GG~~g~~~~ndv~~yD 260 (999)
+++|+|-| +.+|+|+..+..... ..+... ..|. .....+. ... ++++|+|.| +..|+||
T Consensus 63 ~~~yfFkg--------~~yw~~~~~~~~~~~Pk~i~~~-~~~~~~~~iDAA~-~~~~~~~~yfFkg-------~~y~ry~ 125 (194)
T cd00094 63 GKIYFFKG--------DKYWVYTGKNLEPGYPKPISDL-GFPPTVKQIDAAL-RWPDNGKTYFFKG-------DKYWRYD 125 (194)
T ss_pred CEEEEECC--------CEEEEEcCcccccCCCcchhhc-CCCCCCCCccEEE-EEcCCCEEEEEeC-------CEEEEEe
Confidence 79999977 468888866421111 111110 1221 2233333 333 458999988 4788999
Q ss_pred CCCCCceEEE-----ccc-CCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCC
Q 001895 261 TAAKPYEWRK-----LEP-EGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHR 317 (999)
Q Consensus 261 l~s~~~~W~~-----v~~-~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~ 317 (999)
..+. +... +.. -...| ....+|....++++|+|-|. ..|.|+..+
T Consensus 126 ~~~~--~v~~~yP~~i~~~w~g~p--~~idaa~~~~~~~~yfF~g~--------~y~~~d~~~ 176 (194)
T cd00094 126 EKTQ--KMDPGYPKLIETDFPGVP--DKVDAAFRWLDGYYYFFKGD--------QYWRFDPRS 176 (194)
T ss_pred CCCc--cccCCCCcchhhcCCCcC--CCcceeEEeCCCcEEEEECC--------EEEEEeCcc
Confidence 8655 2211 100 01111 12334444445899999663 466676654
No 191
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=69.66 E-value=1.6e+02 Score=31.46 Aligned_cols=192 Identities=12% Similarity=0.045 Sum_probs=99.2
Q ss_pred ccCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEe--CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeec--CC
Q 001895 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ--GP 223 (999)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~--g~ 223 (999)
....++++|+.+.+-..+... . ..++++. ++.+|+.... .+.++|+.+. +++.+... +.
T Consensus 20 ~~~~i~~~~~~~~~~~~~~~~----~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g--~~~~~~~~~~~~ 82 (246)
T PF08450_consen 20 PGGRIYRVDPDTGEVEVIDLP----G---PNGMAFDRPDGRLYVADSG--------GIAVVDPDTG--KVTVLADLPDGG 82 (246)
T ss_dssp TTTEEEEEETTTTEEEEEESS----S---EEEEEEECTTSEEEEEETT--------CEEEEETTTT--EEEEEEEEETTC
T ss_pred CCCEEEEEECCCCeEEEEecC----C---CceEEEEccCCEEEEEEcC--------ceEEEecCCC--cEEEEeeccCCC
Confidence 345899999999877665543 2 3444554 5688887652 4567788875 47776643 22
Q ss_pred CCCCCcccEEEEECCcEEEEEccCC-CCCCC--CeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEecc
Q 001895 224 GPGPRYGHVMALVGQRYLMAIGGND-GKRPL--ADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGR 300 (999)
Q Consensus 224 ~P~~R~~h~~~v~~~~~Lyv~GG~~-g~~~~--ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~ 300 (999)
.+..|.+-.+ +-.++.||+---.. ..... ..+|+++.. . +.+.+..... .-...+....++.||+.--
T Consensus 83 ~~~~~~ND~~-vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~--~~~~~~~~~~----~pNGi~~s~dg~~lyv~ds- 153 (246)
T PF08450_consen 83 VPFNRPNDVA-VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G--KVTVVADGLG----FPNGIAFSPDGKTLYVADS- 153 (246)
T ss_dssp SCTEEEEEEE-E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S--EEEEEEEEES----SEEEEEEETTSSEEEEEET-
T ss_pred cccCCCceEE-EcCCCCEEEEecCCCccccccccceEEECCC-C--eEEEEecCcc----cccceEECCcchheeeccc-
Confidence 2344444444 33444677753221 11112 679999998 5 5555533221 1122222222346777422
Q ss_pred CCCCCCcccEEEEecCCCCe-EEEEECCCCCCCC-cceeEEEEE-CCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEE
Q 001895 301 DASSVPLASAYGLAKHRDGR-WEWAIAPGVSPSP-RYQHAAVFV-NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCD 377 (999)
Q Consensus 301 ~~~~~~~~d~~~~~~~~~~~-W~w~~~~g~~P~~-R~~hsav~~-~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~ 377 (999)
....+|.|+....+. +.-...-...+.. ..--.+++- +++|||..-. .+.|++||++-..-..
T Consensus 154 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~---------~~~I~~~~p~G~~~~~ 219 (246)
T PF08450_consen 154 -----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG---------GGRIVVFDPDGKLLRE 219 (246)
T ss_dssp -----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---------TTEEEEEETTSCEEEE
T ss_pred -----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---------CCEEEEECCCccEEEE
Confidence 234578887754432 3322211111111 122334443 5899997321 3569999999554444
Q ss_pred cc
Q 001895 378 TK 379 (999)
Q Consensus 378 v~ 379 (999)
+.
T Consensus 220 i~ 221 (246)
T PF08450_consen 220 IE 221 (246)
T ss_dssp EE
T ss_pred Ec
Confidence 43
No 192
>PRK13684 Ycf48-like protein; Provisional
Probab=69.14 E-value=2.1e+02 Score=32.59 Aligned_cols=199 Identities=12% Similarity=0.180 Sum_probs=92.5
Q ss_pred CcEEEecCCCCCCCCCcCcEEEEeC-CEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECC
Q 001895 160 NKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQ 238 (999)
Q Consensus 160 ~~W~~l~~~g~~P~pR~~hsa~~~g-~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~ 238 (999)
.+|+++.... ..+...+....++ +.+++.|.. ..+++-+=... .|+.+.. +..-.-+.+....+
T Consensus 119 ~tW~~~~~~~--~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~--tW~~~~~----~~~g~~~~i~~~~~ 183 (334)
T PRK13684 119 KNWTRIPLSE--KLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGK--NWEALVE----DAAGVVRNLRRSPD 183 (334)
T ss_pred CCCeEccCCc--CCCCCceEEEEECCCcceeeecc-------ceEEEECCCCC--CceeCcC----CCcceEEEEEECCC
Confidence 4799885321 1122223344444 356665542 23333322223 4998752 22223445555555
Q ss_pred cEEEEEccCCCCCCCCeEEEE-ECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEe-cC
Q 001895 239 RYLMAIGGNDGKRPLADVWAL-DTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLA-KH 316 (999)
Q Consensus 239 ~~Lyv~GG~~g~~~~ndv~~y-Dl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~-~~ 316 (999)
+ .|+..|..| .+++- |-... +|+.+..... ..........++.+|++|... . ..+. ..
T Consensus 184 g-~~v~~g~~G-----~i~~s~~~gg~--tW~~~~~~~~----~~l~~i~~~~~g~~~~vg~~G-~-------~~~~s~d 243 (334)
T PRK13684 184 G-KYVAVSSRG-----NFYSTWEPGQT--AWTPHQRNSS----RRLQSMGFQPDGNLWMLARGG-Q-------IRFNDPD 243 (334)
T ss_pred C-eEEEEeCCc-----eEEEEcCCCCC--eEEEeeCCCc----ccceeeeEcCCCCEEEEecCC-E-------EEEccCC
Confidence 4 444444433 23332 33334 7998854322 233333444578888886532 1 1121 11
Q ss_pred CCCeEEEEECCCCCCCCcceeEEEEE-CCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccCcCCCCCCCcccccC
Q 001895 317 RDGRWEWAIAPGVSPSPRYQHAAVFV-NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAA 395 (999)
Q Consensus 317 ~~~~W~w~~~~g~~P~~R~~hsav~~-~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~ 395 (999)
...+|+-...+... .....+++++. ++.+|++|.. ..++.-...-.+|..+.....
T Consensus 244 ~G~sW~~~~~~~~~-~~~~l~~v~~~~~~~~~~~G~~----------G~v~~S~d~G~tW~~~~~~~~------------ 300 (334)
T PRK13684 244 DLESWSKPIIPEIT-NGYGYLDLAYRTPGEIWAGGGN----------GTLLVSKDGGKTWEKDPVGEE------------ 300 (334)
T ss_pred CCCccccccCCccc-cccceeeEEEcCCCCEEEEcCC----------CeEEEeCCCCCCCeECCcCCC------------
Confidence 11245432221110 11223344444 5678888753 124433344568998754211
Q ss_pred CCCCccCCCCcceeEEEEE-CCEEEEEcCC
Q 001895 396 GGDAAVELTRRCRHAAAAV-GDLIFIYGGL 424 (999)
Q Consensus 396 ~~~~~~~p~~R~~hsa~~~-~~~LyV~GG~ 424 (999)
.+...+.++.+ ++++|+.|..
T Consensus 301 --------~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 301 --------VPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred --------CCcceEEEEEeCCCceEEECCC
Confidence 12234445544 6788888763
No 193
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=68.42 E-value=1.9e+02 Score=31.69 Aligned_cols=159 Identities=15% Similarity=0.075 Sum_probs=81.5
Q ss_pred CCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCc-eEEEeecCCC---CCCCcccE---EEEECCcEEEEE
Q 001895 172 PTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPR-WHRVVVQGPG---PGPRYGHV---MALVGQRYLMAI 244 (999)
Q Consensus 172 P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~k-W~~v~~~g~~---P~~R~~h~---~~v~~~~~Lyv~ 244 (999)
|.+-.+.+.+++++.+|.--. .+..+.+||+.+..-. |..++-.+-. |-...+++ .++-.+ -|+|+
T Consensus 66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~-GLWvI 138 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDEN-GLWVI 138 (250)
T ss_pred eceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCC-CEEEE
Confidence 455566777778887776543 3478999999997533 4444422111 11111222 222233 47777
Q ss_pred ccCCCCCCCCeEEEEECCCCC--ceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEE
Q 001895 245 GGNDGKRPLADVWALDTAAKP--YEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWE 322 (999)
Q Consensus 245 GG~~g~~~~ndv~~yDl~s~~--~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~ 322 (999)
-........--+-++|+.+.. -+|..--. +.....+.+.=|.||++...+... ..-.+.||..++ +
T Consensus 139 Yat~~~~g~ivvskld~~tL~v~~tw~T~~~-------k~~~~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~---~ 206 (250)
T PF02191_consen 139 YATEDNNGNIVVSKLDPETLSVEQTWNTSYP-------KRSAGNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTG---K 206 (250)
T ss_pred EecCCCCCcEEEEeeCcccCceEEEEEeccC-------chhhcceeeEeeEEEEEEECCCCC--cEEEEEEECCCC---c
Confidence 655443322344556665431 15653211 222333444457889887765543 344566666655 2
Q ss_pred EEECCCCCCCCcceeEEEEE---CCEEEEE
Q 001895 323 WAIAPGVSPSPRYQHAAVFV---NARLHVS 349 (999)
Q Consensus 323 w~~~~g~~P~~R~~hsav~~---~~~L~V~ 349 (999)
-..+.-..+.+-..++++-+ +.+||+.
T Consensus 207 ~~~~~i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 207 EEDVSIPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred eeceeeeeccccCceEeeeECCCCCeEEEE
Confidence 22221112233334555555 4678887
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=68.37 E-value=1.7e+02 Score=31.73 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=80.8
Q ss_pred CcEEEecCCCC--CCCCCcCcEEEEe--CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEE
Q 001895 160 NKWSRITPFGE--PPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMAL 235 (999)
Q Consensus 160 ~~W~~l~~~g~--~P~pR~~hsa~~~--g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v 235 (999)
.-|+...++.. .+.|-.. ++-.. .|.|+..||. ..+|..|+.+.+ .++.- . -..-|-|+++.
T Consensus 99 ~lwe~~~P~~~~~~evPeIN-am~ldP~enSi~~AgGD-------~~~y~~dlE~G~--i~r~~-r---GHtDYvH~vv~ 164 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEIN-AMWLDPSENSILFAGGD-------GVIYQVDLEDGR--IQREY-R---GHTDYVHSVVG 164 (325)
T ss_pred hhhhhcCccccCcccCCccc-eeEeccCCCcEEEecCC-------eEEEEEEecCCE--EEEEE-c---CCcceeeeeee
Confidence 34777766532 2333333 23333 5788888884 478999999853 55442 1 23456677766
Q ss_pred ECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEc-ccCCC----CCCCccceEEEEEeCCEEEEEeccCCCCCCcccE
Q 001895 236 VGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKL-EPEGE----GPPPCMYATASARSDGLLLLCGGRDASSVPLASA 310 (999)
Q Consensus 236 ~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v-~~~~~----~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~ 310 (999)
-+.+-=++-|+-|| .+-.+|+++. +-.++ .+... .|.-.+.- ++...+..-.++||- +...+
T Consensus 165 R~~~~qilsG~EDG-----tvRvWd~kt~--k~v~~ie~yk~~~~lRp~~g~wi-gala~~edWlvCGgG-----p~lsl 231 (325)
T KOG0649|consen 165 RNANGQILSGAEDG-----TVRVWDTKTQ--KHVSMIEPYKNPNLLRPDWGKWI-GALAVNEDWLVCGGG-----PKLSL 231 (325)
T ss_pred cccCcceeecCCCc-----cEEEEecccc--ceeEEeccccChhhcCcccCcee-EEEeccCceEEecCC-----CceeE
Confidence 44334555677676 4667888877 55444 22211 11111122 333335555566653 23446
Q ss_pred EEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEc
Q 001895 311 YGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSG 350 (999)
Q Consensus 311 ~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~G 350 (999)
|.+...+. +.+ .|.|-..|-+.++++.+++.|
T Consensus 232 whLrsse~---t~v-----fpipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 232 WHLRSSES---TCV-----FPIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred EeccCCCc---eEE-----EecccceeEeeeecceEEEec
Confidence 66644432 111 133333455555566666555
No 195
>PLN00181 protein SPA1-RELATED; Provisional
Probab=68.12 E-value=3.3e+02 Score=34.99 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=66.3
Q ss_pred CEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC
Q 001895 185 TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAA 263 (999)
Q Consensus 185 ~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s 263 (999)
+..++.|+. ...+.+||+.+. ..+.... .....-.+++.. .++.+++.||.++ .+..||+.+
T Consensus 545 ~~~las~~~------Dg~v~lWd~~~~----~~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~ 607 (793)
T PLN00181 545 KSQVASSNF------EGVVQVWDVARS----QLVTEMK--EHEKRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQ 607 (793)
T ss_pred CCEEEEEeC------CCeEEEEECCCC----eEEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCC
Confidence 345555554 256888998764 2222110 011111223332 2336788888776 477788865
Q ss_pred CCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEEC
Q 001895 264 KPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVN 343 (999)
Q Consensus 264 ~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~ 343 (999)
.. ....+.... ..........++.++++|+.++ .+..|+...... ......+. ...-..+.+.+
T Consensus 608 ~~-~~~~~~~~~-----~v~~v~~~~~~g~~latgs~dg------~I~iwD~~~~~~-~~~~~~~h---~~~V~~v~f~~ 671 (793)
T PLN00181 608 GV-SIGTIKTKA-----NICCVQFPSESGRSLAFGSADH------KVYYYDLRNPKL-PLCTMIGH---SKTVSYVRFVD 671 (793)
T ss_pred Cc-EEEEEecCC-----CeEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCCc-cceEecCC---CCCEEEEEEeC
Confidence 41 222222110 1111111123577788877654 234444432210 01111111 11112334456
Q ss_pred CEEEEEcCcCCCCCCcccCCeEEEEECCC
Q 001895 344 ARLHVSGGALGGGRMVEDSSSVAVLDTAA 372 (999)
Q Consensus 344 ~~L~V~GG~~~~~~~~~~~~~v~vyD~~t 372 (999)
+..++.|+.+ +.|.+||+.+
T Consensus 672 ~~~lvs~s~D---------~~ikiWd~~~ 691 (793)
T PLN00181 672 SSTLVSSSTD---------NTLKLWDLSM 691 (793)
T ss_pred CCEEEEEECC---------CEEEEEeCCC
Confidence 6677777653 2367788764
No 196
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=67.75 E-value=12 Score=41.64 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=36.4
Q ss_pred CeEEEecCCCCH---------------------HHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-----HHHHH
Q 001895 699 PIKIFGDLHGQF---------------------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETIT 752 (999)
Q Consensus 699 ~i~vvGDiHG~~---------------------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ 752 (999)
.|+-+.|+||++ ..+..+++....... ..-+|..||+++..+.+ ..++.
T Consensus 2 ~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~-----~~l~ld~GD~~~gs~~~~~~~g~~~~~ 76 (281)
T cd07409 2 TILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENP-----NVLFLNAGDAFQGTLWYTLYKGNADAE 76 (281)
T ss_pred EEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCC-----CEEEEeCCCCCCCcchhhhcCChHHHH
Confidence 367789999875 334445555432111 11355589999876532 23334
Q ss_pred HHHHhhhcCCCCEEEecCCccc
Q 001895 753 LLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 753 ll~~lk~~~P~~v~llrGNHE~ 774 (999)
+|-.+.. .+. ..||||.
T Consensus 77 ~ln~~g~----D~~-~lGNHef 93 (281)
T cd07409 77 FMNLLGY----DAM-TLGNHEF 93 (281)
T ss_pred HHHhcCC----CEE-Eeccccc
Confidence 4333321 344 4599997
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=67.64 E-value=2.1e+02 Score=32.04 Aligned_cols=96 Identities=8% Similarity=0.040 Sum_probs=47.2
Q ss_pred CeEEEEECCC-CcEEEecCCCCCCCCCcCcEEEEe--CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCC
Q 001895 150 ADVHCYDVLT-NKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPG 226 (999)
Q Consensus 150 ~dv~~yD~~t-~~W~~l~~~g~~P~pR~~hsa~~~--g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~ 226 (999)
+.+..||+.+ .+++.+.... ..-..+.++.- ++.+|+.+.. .+.+..|++... .+++.+... +.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~~~~------~~~i~~~~~~~~-g~l~~~~~~---~~ 78 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVD---VPGQVQPMVISPDKRHLYVGVRP------EFRVLSYRIADD-GALTFAAES---PL 78 (330)
T ss_pred CCEEEEEECCCCceeeeeEEe---cCCCCccEEECCCCCEEEEEECC------CCcEEEEEECCC-CceEEeeee---cC
Confidence 3567777753 5676655431 21222233332 3466665431 256878888632 346655421 22
Q ss_pred CCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC
Q 001895 227 PRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAA 263 (999)
Q Consensus 227 ~R~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s 263 (999)
+-.-+.++.. +++.||+..-. -+.+.+||+.+
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~-----~~~v~v~~~~~ 111 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYN-----ANCVSVSPLDK 111 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcC-----CCeEEEEEECC
Confidence 1111223333 44466665422 24677787754
No 198
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=66.30 E-value=1.9e+02 Score=31.04 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=48.1
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEe--CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCC
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~ 227 (999)
+.+++||+.+++-...-... ..+ ++++.. +..+|+.++. .+.+++||+.+.. ....-..+ ..
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~--~~~---~~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~--~~~~~~~~--~~- 74 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVG--QRP---RGITLSKDGKLLYVCASD------SDTIQVIDLATGE--VIGTLPSG--PD- 74 (300)
T ss_pred CEEEEEECCCCceEEEEECC--CCC---CceEECCCCCEEEEEECC------CCeEEEEECCCCc--EEEeccCC--CC-
Confidence 47888999877643332221 112 223332 3367777653 2568899988743 33221111 11
Q ss_pred CcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC
Q 001895 228 RYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 228 R~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s~ 264 (999)
...++.. +++.+|+.++.+ ..+..||+.+.
T Consensus 75 --~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~ 105 (300)
T TIGR03866 75 --PELFALHPNGKILYIANEDD-----NLVTVIDIETR 105 (300)
T ss_pred --ccEEEECCCCCEEEEEcCCC-----CeEEEEECCCC
Confidence 1223333 333566665433 36889999775
No 199
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=64.65 E-value=3.2e+02 Score=34.15 Aligned_cols=95 Identities=15% Similarity=0.264 Sum_probs=56.3
Q ss_pred eEEEEECCCCcEEEecCCCCC-CCCC-------cCc-----EEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEE
Q 001895 151 DVHCYDVLTNKWSRITPFGEP-PTPR-------AAH-----VATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHR 217 (999)
Q Consensus 151 dv~~yD~~t~~W~~l~~~g~~-P~pR-------~~h-----sa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~ 217 (999)
.+..+--.+..|+.+...+.+ |.+- -+| +.++..+.+.++.|-+ +.+-+|+..+. ..
T Consensus 337 ~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~------~SikiWn~~t~----kc 406 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG------ESIKIWNRDTL----KC 406 (888)
T ss_pred eEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC------CcEEEEEccCc----ce
Confidence 344444456678888774322 2221 222 3344455555555532 46778887763 22
Q ss_pred EeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 001895 218 VVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 218 v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~ 264 (999)
+. .++.. |-+++..+.++..+|.|+.+| .+..||+.+.
T Consensus 407 iR---Ti~~~-y~l~~~Fvpgd~~Iv~G~k~G-----el~vfdlaS~ 444 (888)
T KOG0306|consen 407 IR---TITCG-YILASKFVPGDRYIVLGTKNG-----ELQVFDLASA 444 (888)
T ss_pred eE---Eeccc-cEEEEEecCCCceEEEeccCC-----ceEEEEeehh
Confidence 22 22333 888888888877888887776 5788888765
No 200
>PTZ00421 coronin; Provisional
Probab=64.48 E-value=3.2e+02 Score=33.02 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=34.2
Q ss_pred EEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 001895 186 MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 186 ~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~ 264 (999)
.+++.||.+ ..+.+||+.+.. ....+. ... ..-.+++...++.+++.|+.++ .+..||+.+.
T Consensus 139 ~iLaSgs~D------gtVrIWDl~tg~-~~~~l~---~h~--~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg 200 (493)
T PTZ00421 139 NVLASAGAD------MVVNVWDVERGK-AVEVIK---CHS--DQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDG 200 (493)
T ss_pred CEEEEEeCC------CEEEEEECCCCe-EEEEEc---CCC--CceEEEEEECCCCEEEEecCCC-----EEEEEECCCC
Confidence 566667642 568899998742 111111 001 1112222333346777787765 5778999876
No 201
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=64.28 E-value=1.3e+02 Score=33.20 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=60.5
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCc
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~ 229 (999)
+.+..||+.+++-.+.... |..-.+=+.+.++++||..==. ....++||..+ ...+. ..+.+.-
T Consensus 68 S~l~~~d~~tg~~~~~~~l---~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~t----l~~~~---~~~y~~E 131 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPL---PPRYFGEGITILGDKLYQLTWK------EGTGFVYDPNT----LKKIG---TFPYPGE 131 (264)
T ss_dssp EEEEEEETTTSSEEEEEE----TTT--EEEEEEETTEEEEEESS------SSEEEEEETTT----TEEEE---EEE-SSS
T ss_pred EEEEEEECCCCcEEEEEEC---CccccceeEEEECCEEEEEEec------CCeEEEEcccc----ceEEE---EEecCCc
Confidence 3788999999986655554 4556777889999999988543 25688999987 34443 3344568
Q ss_pred ccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 001895 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 230 ~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~ 264 (999)
+.++|..++ .||+--|. +.++.+|+.+-
T Consensus 132 GWGLt~dg~-~Li~SDGS------~~L~~~dP~~f 159 (264)
T PF05096_consen 132 GWGLTSDGK-RLIMSDGS------SRLYFLDPETF 159 (264)
T ss_dssp --EEEECSS-CEEEE-SS------SEEEEE-TTT-
T ss_pred ceEEEcCCC-EEEEECCc------cceEEECCccc
Confidence 888986666 78887663 57888998664
No 202
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=64.02 E-value=10 Score=42.61 Aligned_cols=73 Identities=25% Similarity=0.427 Sum_probs=45.3
Q ss_pred CeEEEecCCCCHHHHHHHHHHh---CCCCCCCCccceeEEEeccccC-CCCChHHHHH------------HHHHhhhcCC
Q 001895 699 PIKIFGDLHGQFGDLMRLFDEY---GSPSTAGDIAYIDYLFLGDYVD-RGQHSLETIT------------LLLALKVEYP 762 (999)
Q Consensus 699 ~i~vvGDiHG~~~~L~~il~~~---g~~~~~~~~~~~~~vfLGDyVD-RG~~s~evl~------------ll~~lk~~~P 762 (999)
+|.|=|=.||+++.+.+-+..+ |--+.+ -+|++||+=- |...-+.+|. --+.-.++.|
T Consensus 2 rIaVqGCcHG~Ld~iYkti~~~ek~~~tkVD------LLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~AP 75 (456)
T KOG2863|consen 2 RIAVQGCCHGELDNIYKTISLIEKRGNTKVD------LLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAP 75 (456)
T ss_pred ceeeecccchhHHHHHHHHHHHHHcCCCCcc------EEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCc
Confidence 6789999999999998655444 322332 6888999864 3322222221 1112234556
Q ss_pred CCEEEecCCccccch
Q 001895 763 NNVHLIRGNHEAADI 777 (999)
Q Consensus 763 ~~v~llrGNHE~~~~ 777 (999)
=--++|=||||.++.
T Consensus 76 VlTIFIGGNHEAsny 90 (456)
T KOG2863|consen 76 VLTIFIGGNHEASNY 90 (456)
T ss_pred eeEEEecCchHHHHH
Confidence 566889999999753
No 203
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=63.50 E-value=95 Score=36.04 Aligned_cols=100 Identities=21% Similarity=0.288 Sum_probs=61.8
Q ss_pred ccCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCC
Q 001895 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (999)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~ 227 (999)
.+|++|++|-.-+---++...+ |..|. +++-.+|+.+|+.-= ..++-+++.|+.+- ....+.|.+-.|
T Consensus 404 ~~N~vYilDe~lnvvGkltGl~--~gERI-YAvRf~gdv~yiVTf-----rqtDPlfviDlsNP----enPkvlGeLKIP 471 (603)
T COG4880 404 PVNAVYILDENLNVVGKLTGLA--PGERI-YAVRFVGDVLYIVTF-----RQTDPLFVIDLSNP----ENPKVLGELKIP 471 (603)
T ss_pred ccceeEEEcCCCcEEEEEeccC--CCceE-EEEEEeCceEEEEEE-----eccCceEEEEcCCC----CCCceeEEEecC
Confidence 7899999998887777776553 55564 355566888777743 24577899999873 122233454444
Q ss_pred CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECC
Q 001895 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTA 262 (999)
Q Consensus 228 R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~ 262 (999)
-+..-..-++++.++=+|-.+|.. .+..||..
T Consensus 472 GfS~YLHpigen~~lGvG~~~g~v---KiSLFdiS 503 (603)
T COG4880 472 GFSEYLHPIGENRLLGVGAYQGGV---KISLFDIS 503 (603)
T ss_pred CchhhccccCCCcEEEeecccCCc---eEEEEecc
Confidence 444334455666677677666544 34455553
No 204
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=63.43 E-value=15 Score=40.44 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=46.8
Q ss_pred CeEEEecCCCC--HHHHHHHHHHhCCCCCCCCccceeEEEeccccCCC-CChHHHHHHHHHhhhcCCCCEEEecCCcccc
Q 001895 699 PIKIFGDLHGQ--FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG-QHSLETITLLLALKVEYPNNVHLIRGNHEAA 775 (999)
Q Consensus 699 ~i~vvGDiHG~--~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~lk~~~P~~v~llrGNHE~~ 775 (999)
+|.++|||=|. ...|...|..+......+ -.|..||...-| --+-+++..|+.+-+ .++.+ |||+.-
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D-----~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~D 71 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQAD-----LVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTWF 71 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCC-----EEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhcc
Confidence 68999999999 566677776664322221 244479999766 467888888887643 45555 999984
No 205
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=62.90 E-value=1.4e+02 Score=28.70 Aligned_cols=86 Identities=12% Similarity=0.175 Sum_probs=53.8
Q ss_pred EEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCC-CCCCeEEEE
Q 001895 181 TAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGK-RPLADVWAL 259 (999)
Q Consensus 181 ~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~-~~~ndv~~y 259 (999)
+.+++.+|...-. ......-+..||+.+. +|+.+...............+.+++ +|-++.-.... ...-++|++
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E--~f~~i~~P~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSE--KFRFIKLPEDPYSSDCSSTLIEYKG-KLALVSYNDQGEPDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCc--eEEEEEeeeeeccccCccEEEEeCC-eEEEEEecCCCCcceEEEEEe
Confidence 3466777766654 2233467889999986 4887763212234556677777887 67666544332 234589988
Q ss_pred E-CCCCCceEEEccc
Q 001895 260 D-TAAKPYEWRKLEP 273 (999)
Q Consensus 260 D-l~s~~~~W~~v~~ 273 (999)
+ ..+. +|++...
T Consensus 77 eD~~k~--~Wsk~~~ 89 (129)
T PF08268_consen 77 EDYEKQ--EWSKKHI 89 (129)
T ss_pred eccccc--eEEEEEE
Confidence 5 5556 8987643
No 206
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=62.73 E-value=21 Score=41.81 Aligned_cols=34 Identities=6% Similarity=0.100 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCcEEEEeccccccceEEecCCeE
Q 001895 885 DRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHL 918 (999)
Q Consensus 885 ~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~ 918 (999)
..+++.+-++++++++=||.=.-+++....|.++
T Consensus 322 ~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~ 355 (452)
T KOG1378|consen 322 EGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTC 355 (452)
T ss_pred HHHHHHHHHhceeEEEeccceehhccchhhccee
Confidence 3699999999999999999866555555555554
No 207
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=62.47 E-value=2.1e+02 Score=36.69 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=26.7
Q ss_pred CcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEe
Q 001895 177 AHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVV 219 (999)
Q Consensus 177 ~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~ 219 (999)
..+-+++++.||+.... +.++.+|..+.+.+|+.-.
T Consensus 187 e~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDP 222 (764)
T ss_pred ccCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcC
Confidence 34556779999998543 5789999988767788755
No 208
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=62.15 E-value=2.8e+02 Score=31.87 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=78.1
Q ss_pred ccCeEEEEECCCC--cEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCC
Q 001895 148 ATADVHCYDVLTN--KWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP 225 (999)
Q Consensus 148 ~~~dv~~yD~~t~--~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P 225 (999)
..+.++++|..+. .|+.-...+ ...+..-+.+...+.+|+- ..+ . ...++-+|..+.+.+|..-.. .+
T Consensus 161 ~~g~~~al~~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~~vy~~-~~~---~-~~~~~a~~~~~G~~~w~~~~~---~~ 230 (370)
T COG1520 161 DDGHLYALNADTGTLKWTYETPAP--LSLSIYGSPAIASGTVYVG-SDG---Y-DGILYALNAEDGTLKWSQKVS---QT 230 (370)
T ss_pred CCCeEEEEEccCCcEEEEEecCCc--cccccccCceeecceEEEe-cCC---C-cceEEEEEccCCcEeeeeeee---cc
Confidence 3578888888865 488544321 1222222222334455444 322 1 237999999887778985321 11
Q ss_pred CCCccc-EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCC
Q 001895 226 GPRYGH-VMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS 304 (999)
Q Consensus 226 ~~R~~h-~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~ 304 (999)
..+..- ....+....+|+-||.-.......+.++|..+....|+.-..... ...+.........+|++|+........
T Consensus 231 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~-~~~~~~~~~~~~~dG~v~~~~~~~~~~ 309 (370)
T COG1520 231 IGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSV-QGSGLYTTPVAGADGKVYIGFTDNDGR 309 (370)
T ss_pred cCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEe-ccCCeeEEeecCCCccEEEEEeccccc
Confidence 111111 111222224454444211111234899999988889988765111 111223333333578888875433322
Q ss_pred CCcccEEEEec
Q 001895 305 VPLASAYGLAK 315 (999)
Q Consensus 305 ~~~~d~~~~~~ 315 (999)
.....+.++.
T Consensus 310 -~~~~~~~~~~ 319 (370)
T COG1520 310 -GSGSLYALAD 319 (370)
T ss_pred -cccceEEEec
Confidence 3455667766
No 209
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=61.72 E-value=1.1e+02 Score=34.74 Aligned_cols=103 Identities=20% Similarity=0.207 Sum_probs=59.8
Q ss_pred ccCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEe-CCEEEEEcccC---CCCCCcCcEEEEecCCCCCceEEEeecCC
Q 001895 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIG---PAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (999)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-g~~iyv~GG~~---~~~~~~~dv~vyD~~t~t~kW~~v~~~g~ 223 (999)
.+..+++||..+++-.=+. +..-.++.+..- +..+|+..-+- ..+..++-+.+||..+.+.++...-
T Consensus 15 ~~~rv~viD~d~~k~lGmi-----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i---- 85 (342)
T PF06433_consen 15 MTSRVYVIDADSGKLLGMI-----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI---- 85 (342)
T ss_dssp SSEEEEEEETTTTEEEEEE-----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE----
T ss_pred ccceEEEEECCCCcEEEEe-----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec----
Confidence 3468999999988744332 334445544433 34677665321 2334567789999999765666543
Q ss_pred CCC-CCcc------cEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 001895 224 GPG-PRYG------HVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 224 ~P~-~R~~------h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~ 264 (999)
|. +|.. .....-+++++||+- -.+...|-+.|+...
T Consensus 86 -P~k~R~~~~~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~ 128 (342)
T PF06433_consen 86 -PPKPRAQVVPYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAK 128 (342)
T ss_dssp -TTS-B--BS--GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTT
T ss_pred -CCcchheecccccceEEccCCcEEEEEc----cCCCCeEEEEECCCC
Confidence 33 2442 222233555777763 235678889999887
No 210
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=61.44 E-value=12 Score=39.43 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=36.9
Q ss_pred eEEEecCCCC-----HHHHHHHHHHhC-CCCCCCCccceeEEEeccccCCCCChH-------------HHHHHHHHhhhc
Q 001895 700 IKIFGDLHGQ-----FGDLMRLFDEYG-SPSTAGDIAYIDYLFLGDYVDRGQHSL-------------ETITLLLALKVE 760 (999)
Q Consensus 700 i~vvGDiHG~-----~~~L~~il~~~g-~~~~~~~~~~~~~vfLGDyVDRG~~s~-------------evl~ll~~lk~~ 760 (999)
|+|++|+|=. ++.|.++|..+. ..... .+|++|+++|.-.... +.+..+..+...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~------~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPD------VLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES 74 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTEC------EEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCc------EEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh
Confidence 5677887755 555666666554 22222 7999999999632221 111122221111
Q ss_pred CC--CCEEEecCCccccch
Q 001895 761 YP--NNVHLIRGNHEAADI 777 (999)
Q Consensus 761 ~P--~~v~llrGNHE~~~~ 777 (999)
.. -+|+++.|+||....
T Consensus 75 i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 75 ILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CHCCSEEEEE--TTCTT-S
T ss_pred cccccEEEEeCCCcccccc
Confidence 11 389999999998655
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=60.19 E-value=3.4e+02 Score=31.91 Aligned_cols=147 Identities=17% Similarity=0.186 Sum_probs=70.0
Q ss_pred CcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCC
Q 001895 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (999)
Q Consensus 201 ~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~ 279 (999)
..+|++|+.+.. =..+. ..+. ...+...- ++.+|++....++ ..++|.+|+.+. ..+++.....
T Consensus 220 ~~I~~~dl~~g~--~~~l~---~~~g--~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~~~--- 284 (427)
T PRK02889 220 PVVYVHDLATGR--RRVVA---NFKG--SNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGS--GLRRLTQSSG--- 284 (427)
T ss_pred cEEEEEECCCCC--EEEee---cCCC--CccceEECCCCCEEEEEEccCC---CceEEEEECCCC--CcEECCCCCC---
Confidence 469999998753 23332 1221 11122222 3335555444333 368999999877 5566543211
Q ss_pred CccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEE-ECCEEEEEcCcCCCCCC
Q 001895 280 PCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVF-VNARLHVSGGALGGGRM 358 (999)
Q Consensus 280 ~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~-~~~~L~V~GG~~~~~~~ 358 (999)
.........+++.++|...... ...+|.++.... ..+.....+ .+.....+ -+++.+++....+.
T Consensus 285 --~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g--- 350 (427)
T PRK02889 285 --IDTEPFFSPDGRSIYFTSDRGG---APQIYRMPASGG-AAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG--- 350 (427)
T ss_pred --CCcCeEEcCCCCEEEEEecCCC---CcEEEEEECCCC-ceEEEecCC-----CCcCceEECCCCCEEEEEEccCC---
Confidence 1112234445654455332111 235666654432 333222111 11112222 24544444332221
Q ss_pred cccCCeEEEEECCCCeEEEcc
Q 001895 359 VEDSSSVAVLDTAAGVWCDTK 379 (999)
Q Consensus 359 ~~~~~~v~vyD~~t~~W~~v~ 379 (999)
...|+++|+.+++...+.
T Consensus 351 ---~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 351 ---AFKLYVQDLATGQVTALT 368 (427)
T ss_pred ---cEEEEEEECCCCCeEEcc
Confidence 236999999998877664
No 212
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=60.18 E-value=10 Score=43.79 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=34.2
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccch
Q 001895 733 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (999)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (999)
.+=.+||+-||||++-.+++-|..+ ..+-+--||||...+
T Consensus 193 hLHiVGDIyDRGP~pd~Imd~L~~y-----hsvDiQWGNHDilWm 232 (648)
T COG3855 193 HLHIVGDIYDRGPYPDKIMDTLINY-----HSVDIQWGNHDILWM 232 (648)
T ss_pred heeeecccccCCCCchHHHHHHhhc-----ccccccccCcceEEe
Confidence 4667999999999999999999876 478888999997655
No 213
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=60.17 E-value=18 Score=36.95 Aligned_cols=41 Identities=29% Similarity=0.317 Sum_probs=29.8
Q ss_pred eEEEecccc--CCCCChHHHHHHHHHhhhcCCCCEEEecCCccccch
Q 001895 733 DYLFLGDYV--DRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (999)
Q Consensus 733 ~~vfLGDyV--DRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (999)
.++.-||+- =|=++..|-+.+|=+| |..=+++|||||...-
T Consensus 46 iVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw~ 88 (230)
T COG1768 46 IVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWWS 88 (230)
T ss_pred EEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCccccc
Confidence 456678875 2455666667777665 8889999999998643
No 214
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.47 E-value=20 Score=41.75 Aligned_cols=71 Identities=18% Similarity=0.354 Sum_probs=53.0
Q ss_pred cCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCc
Q 001895 697 KAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 772 (999)
Q Consensus 697 ~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNH 772 (999)
.++|.||||.-|.++.|.+-.+...... |. +.-++++|++.+--..+-|++.+... +.+.|--++++-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~--Gp--Fd~liCvGnfF~~~~~~~e~~~ykng-~~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKS--GP--FDLLICVGNFFGHDTQNAEVEKYKNG-TKKVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcC--CC--ceEEEEecccCCCccchhHHHHHhcC-CccCceeEEEecCCC
Confidence 3689999999999999988777664322 11 11577899999977778888887755 346677778877766
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=59.31 E-value=3.6e+02 Score=31.80 Aligned_cols=189 Identities=12% Similarity=0.102 Sum_probs=89.6
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEe-CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCC
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R 228 (999)
..+|++|+.+++...+.... . ........- +.+|++.....+ ..++|++|+.+.. ...+.. ...
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~---g-~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~--~~~lt~---~~~-- 292 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR---G-INGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQ--LTRLTN---HFG-- 292 (433)
T ss_pred cEEEEEECCCCCEEEeccCC---C-CccCceECCCCCEEEEEEeCCC----CceEEEEECCCCC--eEECcc---CCC--
Confidence 46999999988877775431 1 111111112 345554432211 2589999998753 444431 111
Q ss_pred cccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCc
Q 001895 229 YGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPL 307 (999)
Q Consensus 229 ~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~ 307 (999)
.....+.. ++.+|++.....+ ..++|.+|+.+. +++.+...+. .........+++.+++....+. .
T Consensus 293 ~~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g--~~~~lt~~g~-----~~~~~~~SpDG~~Ia~~~~~~~---~ 359 (433)
T PRK04922 293 IDTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGG--SAERLTFQGN-----YNARASVSPDGKKIAMVHGSGG---Q 359 (433)
T ss_pred CccceEECCCCCEEEEEECCCC---CceEEEEECCCC--CeEEeecCCC-----CccCEEECCCCCEEEEEECCCC---c
Confidence 11122233 3334544433333 257999999887 7777653322 1222233335544444332221 1
Q ss_pred ccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEc
Q 001895 308 ASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDT 378 (999)
Q Consensus 308 ~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v 378 (999)
..++.++..+. .+. ..... .........-+++.+++...... ...++.+|+....=..+
T Consensus 360 ~~I~v~d~~~g-~~~--~Lt~~---~~~~~p~~spdG~~i~~~s~~~g------~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 360 YRIAVMDLSTG-SVR--TLTPG---SLDESPSFAPNGSMVLYATREGG------RGVLAAVSTDGRVRQRL 418 (433)
T ss_pred eeEEEEECCCC-CeE--ECCCC---CCCCCceECCCCCEEEEEEecCC------ceEEEEEECCCCceEEc
Confidence 25666665433 333 22211 11111122235666665543321 34689999866543333
No 216
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=58.40 E-value=18 Score=39.51 Aligned_cols=57 Identities=25% Similarity=0.208 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-----HHHHHHHHHhhhcCCCCEEEecCCccc
Q 001895 708 GQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETITLLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 708 G~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (999)
|-+..|..+++....... ..-+|..||+++..+.+ ..++..|-.+. --+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~-----~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENP-----NTLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCC-----CEEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEeeccccc
Confidence 446667777776543211 12466799999876532 34555555543 23557899996
No 217
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=56.22 E-value=16 Score=40.73 Aligned_cols=69 Identities=23% Similarity=0.166 Sum_probs=35.1
Q ss_pred eEEEecCCCCHHH----------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCC-----hHHHHHHHHHhhhcCCCC
Q 001895 700 IKIFGDLHGQFGD----------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-----SLETITLLLALKVEYPNN 764 (999)
Q Consensus 700 i~vvGDiHG~~~~----------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-----s~evl~ll~~lk~~~P~~ 764 (999)
|+.+.|+||++.. +..+++........ +....-+|-.||++.--+. ..-++.+|-++.. .
T Consensus 3 Il~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~-~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~----D 77 (285)
T cd07405 3 ILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAA-QGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGY----D 77 (285)
T ss_pred EEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhc-cCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCC----c
Confidence 6788999998643 44555544211000 0011235559999842222 1223444444432 3
Q ss_pred EEEecCCccc
Q 001895 765 VHLIRGNHEA 774 (999)
Q Consensus 765 v~llrGNHE~ 774 (999)
+. ..||||.
T Consensus 78 a~-~~GNHEf 86 (285)
T cd07405 78 AM-AVGNHEF 86 (285)
T ss_pred EE-eeccccc
Confidence 33 4499996
No 218
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=53.30 E-value=18 Score=43.91 Aligned_cols=71 Identities=28% Similarity=0.326 Sum_probs=41.8
Q ss_pred cCCeEEEecCCCCHH------------HHHHHHHHhCCCCCCCCccceeEEEeccccCCCC------ChHHHHHHHHHhh
Q 001895 697 KAPIKIFGDLHGQFG------------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQ------HSLETITLLLALK 758 (999)
Q Consensus 697 ~~~i~vvGDiHG~~~------------~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~------~s~evl~ll~~lk 758 (999)
+-.|+-..|+||++. -+.++.........+.. ..-+|=.||+++..+ ...-.+.+|-.|+
T Consensus 26 ~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~--~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~ 103 (517)
T COG0737 26 KLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENK--NVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG 103 (517)
T ss_pred eEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcC--CeEEEeCCcccCCccccccccCCChHHHHHhhcC
Confidence 345788999999999 44443332221111111 112344999999843 3344566666664
Q ss_pred hcCCCCEEEecCCccc
Q 001895 759 VEYPNNVHLIRGNHEA 774 (999)
Q Consensus 759 ~~~P~~v~llrGNHE~ 774 (999)
.. .+..||||.
T Consensus 104 yD-----a~tiGNHEF 114 (517)
T COG0737 104 YD-----AMTLGNHEF 114 (517)
T ss_pred Cc-----EEeeccccc
Confidence 33 467799998
No 219
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=52.80 E-value=3.7e+02 Score=30.04 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=46.5
Q ss_pred eEEEEECC-CCcEEEecCCCCCCCCCcCcEEEEe-CC-EEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCC
Q 001895 151 DVHCYDVL-TNKWSRITPFGEPPTPRAAHVATAV-GT-MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (999)
Q Consensus 151 dv~~yD~~-t~~W~~l~~~g~~P~pR~~hsa~~~-g~-~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~ 227 (999)
.+..|++. +++++.+... +.+-.-+.++.. ++ .+|+.. +. .+.+.+||+.++......+. ..+..
T Consensus 58 ~i~~~~~~~~g~l~~~~~~---~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~ 125 (330)
T PRK11028 58 RVLSYRIADDGALTFAAES---PLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGL 125 (330)
T ss_pred cEEEEEECCCCceEEeeee---cCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCC
Confidence 45556664 4566655432 111111223333 33 566553 21 25788888865321112222 12333
Q ss_pred CcccEEEEECC-cEEEEEccCCCCCCCCeEEEEECCCC
Q 001895 228 RYGHVMALVGQ-RYLMAIGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 228 R~~h~~~v~~~-~~Lyv~GG~~g~~~~ndv~~yDl~s~ 264 (999)
...|.+++..+ +++|+..-. .+.+++||+.+.
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~~~ 158 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLK-----EDRIRLFTLSDD 158 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCC-----CCEEEEEEECCC
Confidence 34466655533 366664422 347899998663
No 220
>PRK00178 tolB translocation protein TolB; Provisional
Probab=52.25 E-value=4.5e+02 Score=30.78 Aligned_cols=183 Identities=14% Similarity=0.139 Sum_probs=88.9
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEe--CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCC
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~ 227 (999)
..+|++|+.+++-+.+.... ....+.... +++|++..-.. + ..++|++|+.+.. +.++.. .+.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~-----g~~~~~~~SpDG~~la~~~~~~--g--~~~Iy~~d~~~~~--~~~lt~---~~~- 287 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE-----GLNGAPAWSPDGSKLAFVLSKD--G--NPEIYVMDLASRQ--LSRVTN---HPA- 287 (430)
T ss_pred CEEEEEECCCCCEEEccCCC-----CCcCCeEECCCCCEEEEEEccC--C--CceEEEEECCCCC--eEEccc---CCC-
Confidence 47999999998887775431 111112222 34555432211 1 2589999998853 665541 111
Q ss_pred CcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCC
Q 001895 228 RYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP 306 (999)
Q Consensus 228 R~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~ 306 (999)
. ....... ++.+|++....++ ..++|.+|+.+. +++.+..... .........+++.++|......
T Consensus 288 ~-~~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g--~~~~lt~~~~-----~~~~~~~Spdg~~i~~~~~~~~--- 353 (430)
T PRK00178 288 I-DTEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGG--RAERVTFVGN-----YNARPRLSADGKTLVMVHRQDG--- 353 (430)
T ss_pred C-cCCeEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEeecCCC-----CccceEECCCCCEEEEEEccCC---
Confidence 1 1112222 3335655543332 257999999888 7777653221 1222233335544444433222
Q ss_pred cccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCC
Q 001895 307 LASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG 373 (999)
Q Consensus 307 ~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~ 373 (999)
...++.++..+. .++...... ........-+++++++...... ...+++.+....
T Consensus 354 ~~~l~~~dl~tg-~~~~lt~~~-----~~~~p~~spdg~~i~~~~~~~g------~~~l~~~~~~g~ 408 (430)
T PRK00178 354 NFHVAAQDLQRG-SVRILTDTS-----LDESPSVAPNGTMLIYATRQQG------RGVLMLVSINGR 408 (430)
T ss_pred ceEEEEEECCCC-CEEEccCCC-----CCCCceECCCCCEEEEEEecCC------ceEEEEEECCCC
Confidence 234666766543 333222111 1111122236666666543222 245788887544
No 221
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=52.15 E-value=4.3e+02 Score=33.85 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=34.5
Q ss_pred ecCCCCCceEEEeecCCCCCCC------cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEccc
Q 001895 207 DLTQQRPRWHRVVVQGPGPGPR------YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEP 273 (999)
Q Consensus 207 D~~t~t~kW~~v~~~g~~P~~R------~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~ 273 (999)
+...-...|+.-. |..+.++ ...+-+++++ .||+... .+.++.+|..+....|+.-..
T Consensus 160 NV~~L~~aWt~~t--Gd~~~~~~~~~~~~e~TPlvvgg-~lYv~t~------~~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 160 NVGNLKVAWTYHT--GDLKTPDDPGEATFQATPLKVGD-TLYLCTP------HNKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred cccCceEEEEEEC--CCccccccccccccccCCEEECC-EEEEECC------CCeEEEEECCCCcEEEEEcCC
Confidence 3333334577643 4443332 2334456676 8999754 257899999888778886543
No 222
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=51.89 E-value=38 Score=37.61 Aligned_cols=76 Identities=16% Similarity=0.301 Sum_probs=49.6
Q ss_pred CCeEEEecCC----CCHHHHHHHHHHhC-CCCCCCCccceeEEEeccccCCC----CCh----HHHHHHHHH-hhhcCC-
Q 001895 698 APIKIFGDLH----GQFGDLMRLFDEYG-SPSTAGDIAYIDYLFLGDYVDRG----QHS----LETITLLLA-LKVEYP- 762 (999)
Q Consensus 698 ~~i~vvGDiH----G~~~~L~~il~~~g-~~~~~~~~~~~~~vfLGDyVDRG----~~s----~evl~ll~~-lk~~~P- 762 (999)
..++|+||+| -.++.|.++|+.+. ..+. ++ ...-+||+|+++-+. ..+ .|-++-|.. +..+||
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~-~~-~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPE-NE-LPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCcc-cC-CCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 4589999998 45778888888873 2111 11 133799999998763 222 234445544 234566
Q ss_pred ----CCEEEecCCcccc
Q 001895 763 ----NNVHLIRGNHEAA 775 (999)
Q Consensus 763 ----~~v~llrGNHE~~ 775 (999)
.+++++.|-.|-.
T Consensus 106 L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHhcCeEEEECCCCCCC
Confidence 4899999999964
No 223
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=51.63 E-value=4e+02 Score=30.04 Aligned_cols=156 Identities=18% Similarity=0.263 Sum_probs=61.5
Q ss_pred CcEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCc
Q 001895 160 NKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQR 239 (999)
Q Consensus 160 ~~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~ 239 (999)
.+|..+....+.+.....+++...++..||.|-. .+ +|-....-..|++++....+|. ..+.+..+++.
T Consensus 47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~--------g~-ll~T~DgG~tW~~v~l~~~lpg--s~~~i~~l~~~ 115 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP--------GL-LLHTTDGGKTWERVPLSSKLPG--SPFGITALGDG 115 (302)
T ss_dssp SS-EE-----S-----EEEEEEEETTEEEEEEET--------TE-EEEESSTTSS-EE----TT-SS---EEEEEEEETT
T ss_pred ccccccccCCCccceeeEEEEEecCCceEEEcCC--------ce-EEEecCCCCCcEEeecCCCCCC--CeeEEEEcCCC
Confidence 5798886432112122233444457788888742 12 3333322235999974434443 33445555665
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEE-EecCCC
Q 001895 240 YLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYG-LAKHRD 318 (999)
Q Consensus 240 ~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~-~~~~~~ 318 (999)
.++++|.. ..+++-.-.-. +|+.+..... ..........++++++++... .++. .++...
T Consensus 116 ~~~l~~~~------G~iy~T~DgG~--tW~~~~~~~~----gs~~~~~r~~dG~~vavs~~G-------~~~~s~~~G~~ 176 (302)
T PF14870_consen 116 SAELAGDR------GAIYRTTDGGK--TWQAVVSETS----GSINDITRSSDGRYVAVSSRG-------NFYSSWDPGQT 176 (302)
T ss_dssp EEEEEETT--------EEEESSTTS--SEEEEE-S--------EEEEEE-TTS-EEEEETTS-------SEEEEE-TT-S
T ss_pred cEEEEcCC------CcEEEeCCCCC--CeeEcccCCc----ceeEeEEECCCCcEEEEECcc-------cEEEEecCCCc
Confidence 77777643 23444333334 8998754332 122223344577877776432 1222 223322
Q ss_pred CeEEEEECCCCCCCCcceeEEEEE-CCEEEEEc
Q 001895 319 GRWEWAIAPGVSPSPRYQHAAVFV-NARLHVSG 350 (999)
Q Consensus 319 ~~W~w~~~~g~~P~~R~~hsav~~-~~~L~V~G 350 (999)
.|.-.... ..|.-.++.+. ++.|+++.
T Consensus 177 -~w~~~~r~----~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 177 -TWQPHNRN----SSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp -S-EEEE------SSS-EEEEEE-TTS-EEEEE
T ss_pred -cceEEccC----ccceehhceecCCCCEEEEe
Confidence 34433332 33444455444 56776654
No 224
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=50.75 E-value=81 Score=36.86 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=76.8
Q ss_pred ccEEEEECCcEEEEEcc-CCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccce--EEE-EEeCCEEEEEeccCCCCC
Q 001895 230 GHVMALVGQRYLMAIGG-NDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYA--TAS-ARSDGLLLLCGGRDASSV 305 (999)
Q Consensus 230 ~h~~~v~~~~~Lyv~GG-~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~--~a~-~~~~~~LyvfGG~~~~~~ 305 (999)
-|+.+..+.+ .|++|| ..+ ++|.+.+.+. .--.+ .. +.|. +.. ...++.+++-||.++.-.
T Consensus 84 v~al~s~n~G-~~l~ag~i~g-----~lYlWelssG--~LL~v--~~-----aHYQ~ITcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 84 VHALASSNLG-YFLLAGTISG-----NLYLWELSSG--ILLNV--LS-----AHYQSITCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred eeeeecCCCc-eEEEeecccC-----cEEEEEeccc--cHHHH--HH-----hhccceeEEEEeCCCcEEEecCCCccEE
Confidence 3556666664 555555 544 5777777776 11111 10 1121 122 334788888888776532
Q ss_pred CcccEEEEecCCCCeEEEEECCCCCCCCc---ceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccCc
Q 001895 306 PLASAYGLAKHRDGRWEWAIAPGVSPSPR---YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVV 382 (999)
Q Consensus 306 ~~~d~~~~~~~~~~~W~w~~~~g~~P~~R---~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~~ 382 (999)
+|.+-..-. ......|.|+ ..|+..+. +.-.=+||.+..-.....-..+.+||+..+.-..--.
T Consensus 149 ----vW~l~~lv~------a~~~~~~~p~~~f~~HtlsIT-Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-- 215 (476)
T KOG0646|consen 149 ----VWLLTDLVS------ADNDHSVKPLHIFSDHTLSIT-DLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-- 215 (476)
T ss_pred ----EEEEEeecc------cccCCCccceeeeccCcceeE-EEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--
Confidence 222211000 0000123333 33443332 2222334433211111224568889988885443222
Q ss_pred CCCCCCCcccccCCCCCccCCCCcceeEEEEE-CCEEEEEcCCCCCcCcCcEEEe
Q 001895 383 TSPRTGRYSADAAGGDAAVELTRRCRHAAAAV-GDLIFIYGGLRGGVLLDDLLVA 436 (999)
Q Consensus 383 ~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~-~~~LyV~GG~~~~~~l~Dv~~l 436 (999)
.++.-+++++- .++.+.+|+..|..+..+++.+
T Consensus 216 ---------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 216 ---------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred ---------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 25555666665 5577777888777666665543
No 225
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=50.60 E-value=3e+02 Score=28.36 Aligned_cols=94 Identities=11% Similarity=0.102 Sum_probs=43.6
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeC-CEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCC
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g-~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R 228 (999)
..+++||..+.+....-.. ....-.+..... +.+++.|+. ...+.+||+.+.. ....+. ....
T Consensus 73 ~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~~~~~-----~~~~ 136 (289)
T cd00200 73 KTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETGK-CLTTLR-----GHTD 136 (289)
T ss_pred CeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCcE-EEEEec-----cCCC
Confidence 3778888877532221111 111112222233 366666652 2578999988532 111111 1111
Q ss_pred cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 001895 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 229 ~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~ 264 (999)
.-.++....++.+++.|..++ .+..||+.+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~ 167 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDG-----TIKLWDLRTG 167 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCC-----cEEEEEcccc
Confidence 222333344334555544343 5888888654
No 226
>PRK04043 tolB translocation protein TolB; Provisional
Probab=50.33 E-value=4.9e+02 Score=30.70 Aligned_cols=154 Identities=10% Similarity=0.061 Sum_probs=77.1
Q ss_pred CcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCC
Q 001895 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP 280 (999)
Q Consensus 201 ~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~ 280 (999)
.++|++|+.+.. =..+. ..+ .........-++.+|++.-..++ ..++|.+|+.+. .++++.....
T Consensus 213 ~~Iyv~dl~tg~--~~~lt---~~~-g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g--~~~~LT~~~~---- 277 (419)
T PRK04043 213 PTLYKYNLYTGK--KEKIA---SSQ-GMLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTK--TLTQITNYPG---- 277 (419)
T ss_pred CEEEEEECCCCc--EEEEe---cCC-CcEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCC--cEEEcccCCC----
Confidence 389999998752 33443 111 11111112223435555443333 368999999888 8888865432
Q ss_pred ccceEEEEEeCC-EEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCc
Q 001895 281 CMYATASARSDG-LLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMV 359 (999)
Q Consensus 281 r~~~~a~~~~~~-~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~ 359 (999)
.........+| +|++...+.+ ..++|.++.... ..+.....+ .+.. ...-+++.+++-.........
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g-~~~rlt~~g-----~~~~-~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSG-SVEQVVFHG-----KNNS-SVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred -ccCccEECCCCCEEEEEECCCC----CceEEEEECCCC-CeEeCccCC-----CcCc-eECCCCCEEEEEEcCCCcccC
Confidence 12222333444 5665544322 346777776543 332221111 1122 222244433333322211100
Q ss_pred ccCCeEEEEECCCCeEEEcccC
Q 001895 360 EDSSSVAVLDTAAGVWCDTKSV 381 (999)
Q Consensus 360 ~~~~~v~vyD~~t~~W~~v~~~ 381 (999)
....+++++|++++.+..+...
T Consensus 346 ~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCCcEEEEEECCCCCeEECCCC
Confidence 1135899999999999887653
No 227
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=49.21 E-value=4.8e+02 Score=30.29 Aligned_cols=203 Identities=14% Similarity=0.088 Sum_probs=102.9
Q ss_pred cCeEEEEECCCCcEEEecCCCCCCCCCcCcE-EEEeCC-EEEEEcccCCCCC-----CcCcEEEEecCCCCCceEEEeec
Q 001895 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHV-ATAVGT-MVVIQGGIGPAGL-----SAEDLHVLDLTQQRPRWHRVVVQ 221 (999)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hs-a~~~g~-~iyv~GG~~~~~~-----~~~dv~vyD~~t~t~kW~~v~~~ 221 (999)
...++++|+.+++...-. ..+...+ ++-..+ ..+++........ ....+|++.+.+...+=..+-
T Consensus 149 ~~~l~v~Dl~tg~~l~d~------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf-- 220 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLPDG------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF-- 220 (414)
T ss_dssp EEEEEEEETTTTEEEEEE------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE--
T ss_pred eEEEEEEECCCCcCcCCc------ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE--
Confidence 347899999998544321 1122233 343433 5555554433222 256889999887531212222
Q ss_pred CCCCCCCc-ccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC---CceEEEcccCCCCCCCccceEEEEEeCCEEEE
Q 001895 222 GPGPGPRY-GHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAK---PYEWRKLEPEGEGPPPCMYATASARSDGLLLL 296 (999)
Q Consensus 222 g~~P~~R~-~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s~---~~~W~~v~~~~~~P~~r~~~~a~~~~~~~Lyv 296 (999)
..+.... ...+..- ++.+|+|.-. .+.. .+++|.+|+... ...|..+..... .....+...++.+|+
T Consensus 221 -e~~~~~~~~~~~~~s~d~~~l~i~~~-~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~-----~~~~~v~~~~~~~yi 292 (414)
T PF02897_consen 221 -EEPDEPFWFVSVSRSKDGRYLFISSS-SGTS-ESEVYLLDLDDGGSPDAKPKLLSPRED-----GVEYYVDHHGDRLYI 292 (414)
T ss_dssp -C-TTCTTSEEEEEE-TTSSEEEEEEE-SSSS-EEEEEEEECCCTTTSS-SEEEEEESSS-----S-EEEEEEETTEEEE
T ss_pred -eecCCCcEEEEEEecCcccEEEEEEE-cccc-CCeEEEEeccccCCCcCCcEEEeCCCC-----ceEEEEEccCCEEEE
Confidence 2223332 2222223 3334444333 3322 589999999873 347888865332 223334445889998
Q ss_pred EeccCCCCCCcccEEEEecCCCC--eEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECC-CC
Q 001895 297 CGGRDASSVPLASAYGLAKHRDG--RWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTA-AG 373 (999)
Q Consensus 297 fGG~~~~~~~~~d~~~~~~~~~~--~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~-t~ 373 (999)
.-..+. ....++.++..... .|.-...+.. ....--.+...+++|++.-=.++ ...|.+||+. +.
T Consensus 293 ~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~Lvl~~~~~~-------~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 293 LTNDDA---PNGRLVAVDLADPSPAEWWTVLIPED--EDVSLEDVSLFKDYLVLSYRENG-------SSRLRVYDLDDGK 360 (414)
T ss_dssp EE-TT----TT-EEEEEETTSTSGGGEEEEEE--S--SSEEEEEEEEETTEEEEEEEETT-------EEEEEEEETT-TE
T ss_pred eeCCCC---CCcEEEEecccccccccceeEEcCCC--CceeEEEEEEECCEEEEEEEECC-------ccEEEEEECCCCc
Confidence 866333 33455666655443 3543322211 22244555667888888743322 4569999999 44
Q ss_pred eEEEcc
Q 001895 374 VWCDTK 379 (999)
Q Consensus 374 ~W~~v~ 379 (999)
.-..+.
T Consensus 361 ~~~~~~ 366 (414)
T PF02897_consen 361 ESREIP 366 (414)
T ss_dssp EEEEEE
T ss_pred EEeeec
Confidence 444433
No 228
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=48.55 E-value=3.3e+02 Score=32.24 Aligned_cols=117 Identities=20% Similarity=0.295 Sum_probs=58.7
Q ss_pred eEEEEECCCC-cEEEecCCCCCCCCCcCcEEEEe--CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCC
Q 001895 151 DVHCYDVLTN-KWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (999)
Q Consensus 151 dv~~yD~~t~-~W~~l~~~g~~P~pR~~hsa~~~--g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~ 227 (999)
.+-.||+.+. .|..--..| .|.. .++.+ |..|...|| +.+-+||+.+.. .++..
T Consensus 177 ~vrl~DtR~~~~~v~elnhg---~pVe--~vl~lpsgs~iasAgG--------n~vkVWDl~~G~----------qll~~ 233 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVVELNHG---CPVE--SVLALPSGSLIASAGG--------NSVKVWDLTTGG----------QLLTS 233 (487)
T ss_pred eEEEEEeccCCceeEEecCC---Ccee--eEEEcCCCCEEEEcCC--------CeEEEEEecCCc----------eehhh
Confidence 5666787766 444332222 1111 23333 235555566 578888987542 33444
Q ss_pred Cccc-----EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCC
Q 001895 228 RYGH-----VMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (999)
Q Consensus 228 R~~h-----~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~ 302 (999)
+..| +++...++.-.+-||.|+. |=+||+ . .|.-+..... |.| . -...+..++.-.++|+.++
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~-----VKVfd~--t--~~Kvv~s~~~-~~p-v-Lsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDRH-----VKVFDT--T--NYKVVHSWKY-PGP-V-LSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred hhcccceEEEEEeecCCceEeecccccc-----eEEEEc--c--ceEEEEeeec-ccc-e-eeEEecCCCceEEEecccc
Confidence 4433 2333344466777888873 567774 2 3544433332 111 1 1223334666666776554
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=47.68 E-value=4.7e+02 Score=29.73 Aligned_cols=202 Identities=14% Similarity=0.101 Sum_probs=94.2
Q ss_pred eEEEEECCCCcEEEecCCCCCCCCCcCcEEEE--eCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCC-CC
Q 001895 151 DVHCYDVLTNKWSRITPFGEPPTPRAAHVATA--VGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP-GP 227 (999)
Q Consensus 151 dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~--~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P-~~ 227 (999)
.++.||..+.+++.+........|. -.+. -++.||+..... .....+..|++...+.+.+.+.. .+ .+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps---~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~---~~~~g 86 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPS---WLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNS---VPSGG 86 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSEC---CEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEE---EEESS
T ss_pred EEEEEcCCCCCceEeeeecCCCCCc---eEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeee---eccCC
Confidence 4556677999998876531111111 1222 245888886543 12356777777765345766652 23 22
Q ss_pred Cc-ccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEc---------ccCCCCCCCccceEEEEEeCC-EEEE
Q 001895 228 RY-GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKL---------EPEGEGPPPCMYATASARSDG-LLLL 296 (999)
Q Consensus 228 R~-~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v---------~~~~~~P~~r~~~~a~~~~~~-~Lyv 296 (999)
.. .|.+..-++++||+.--. -..+.+|++..+. +-... .+..........|......++ .+|+
T Consensus 87 ~~p~~i~~~~~g~~l~vany~-----~g~v~v~~l~~~g-~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYG-----GGSVSVFPLDDDG-SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTS-EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCcEEEEEecCCCEEEEEEcc-----CCeEEEEEccCCc-ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 22 232222244466665322 2467788876631 11111 011111112233444444454 5655
Q ss_pred EeccCCCCCCcccEEEEecCCCC-eEEEEECCCCCCCCc-ceeEEEEEC-CEEEEEcCcCCCCCCcccCCeEEEEECC--
Q 001895 297 CGGRDASSVPLASAYGLAKHRDG-RWEWAIAPGVSPSPR-YQHAAVFVN-ARLHVSGGALGGGRMVEDSSSVAVLDTA-- 371 (999)
Q Consensus 297 fGG~~~~~~~~~d~~~~~~~~~~-~W~w~~~~g~~P~~R-~~hsav~~~-~~L~V~GG~~~~~~~~~~~~~v~vyD~~-- 371 (999)
. .. -.+.++.|+..... .+........ |..- -.|.+..-+ ..+||+.-. .+.|.+|+..
T Consensus 161 ~-dl-----G~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~---------s~~v~v~~~~~~ 224 (345)
T PF10282_consen 161 P-DL-----GADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNEL---------SNTVSVFDYDPS 224 (345)
T ss_dssp E-ET-----TTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETT---------TTEEEEEEEETT
T ss_pred E-ec-----CCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCC---------CCcEEEEeeccc
Confidence 4 22 13446666554432 2332111111 2221 123332223 579998653 3456666655
Q ss_pred CCeEEEcccCcC
Q 001895 372 AGVWCDTKSVVT 383 (999)
Q Consensus 372 t~~W~~v~~~~~ 383 (999)
+..|+.+.....
T Consensus 225 ~g~~~~~~~~~~ 236 (345)
T PF10282_consen 225 DGSLTEIQTIST 236 (345)
T ss_dssp TTEEEEEEEEES
T ss_pred CCceeEEEEeee
Confidence 778877765533
No 230
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.98 E-value=4.8e+02 Score=29.31 Aligned_cols=136 Identities=17% Similarity=0.168 Sum_probs=68.0
Q ss_pred CCeEEEEECCCCC--ceEEEcccCCCCCCCccceEEEEE---eCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECC
Q 001895 253 LADVWALDTAAKP--YEWRKLEPEGEGPPPCMYATASAR---SDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAP 327 (999)
Q Consensus 253 ~ndv~~yDl~s~~--~~W~~v~~~~~~P~~r~~~~a~~~---~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~ 327 (999)
++.++.||.+... +-|..-..-... =.+-.+-.+ .+++|++.=+ ++. .-.-+|.++..+. .-+|....
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~~~---WaGEVSdIlYdP~~D~LLlAR~-DGh--~nLGvy~ldr~~g-~~~~L~~~ 149 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDKTK---WAGEVSDILYDPYEDRLLLARA-DGH--ANLGVYSLDRRTG-KAEKLSSN 149 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCccc---cccchhheeeCCCcCEEEEEec-CCc--ceeeeEEEcccCC-ceeeccCC
Confidence 6789999998762 235442221110 011111112 2466766522 222 3455777776543 33333322
Q ss_pred CCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeE--EEcccCcCCCCCCCcccccCCCCCccCCCC
Q 001895 328 GVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVW--CDTKSVVTSPRTGRYSADAAGGDAAVELTR 405 (999)
Q Consensus 328 g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W--~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~ 405 (999)
|.+ -.+.+++..+|-+ .+. ......+.+||+.+++| ..++... ++ .+.....
T Consensus 150 ---ps~---KG~~~~D~a~F~i--~~~----~~g~~~i~~~Dli~~~~~~e~f~~~~-s~-------------Dg~~~~~ 203 (339)
T PF09910_consen 150 ---PSL---KGTLVHDYACFGI--NNF----HKGVSGIHCLDLISGKWVIESFDVSL-SV-------------DGGPVIR 203 (339)
T ss_pred ---CCc---CceEeeeeEEEec--ccc----ccCCceEEEEEccCCeEEEEeccccc-CC-------------CCCceEe
Confidence 222 2344445445433 111 23378899999999999 3333221 11 1112345
Q ss_pred cceeEEEEECCEEEEE
Q 001895 406 RCRHAAAAVGDLIFIY 421 (999)
Q Consensus 406 R~~hsa~~~~~~LyV~ 421 (999)
|..-+++..-+++|.|
T Consensus 204 ~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 204 PELGAMASAYNRLFAF 219 (339)
T ss_pred eccccEEEEeeeEEEE
Confidence 5556677777887765
No 231
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=45.88 E-value=50 Score=37.34 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=27.5
Q ss_pred eEEEeccccCCCCC---hHHHHHHHHHhhhcCCCCEEEecCCccccc
Q 001895 733 DYLFLGDYVDRGQH---SLETITLLLALKVEYPNNVHLIRGNHEAAD 776 (999)
Q Consensus 733 ~~vfLGDyVDRG~~---s~evl~ll~~lk~~~P~~v~llrGNHE~~~ 776 (999)
-+||+||.|+- .. ..++|+..++=.+.+.=-...+.||||...
T Consensus 103 lVVfTGD~i~g-~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 103 LVVFTGDNIFG-HSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred EEEEeCCcccc-cccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc
Confidence 58999999996 32 233444444434444334678899999853
No 232
>PTZ00420 coronin; Provisional
Probab=45.60 E-value=6.7e+02 Score=30.94 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=33.8
Q ss_pred EEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 001895 186 MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 186 ~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~ 264 (999)
.+++.||.+ ..+.+||+.+.. .-..+. .+ ..-.++....++.+++.|+.++ .+..||+.+.
T Consensus 139 ~iLaSgS~D------gtIrIWDl~tg~-~~~~i~----~~--~~V~SlswspdG~lLat~s~D~-----~IrIwD~Rsg 199 (568)
T PTZ00420 139 YIMCSSGFD------SFVNIWDIENEK-RAFQIN----MP--KKLSSLKWNIKGNLLSGTCVGK-----HMHIIDPRKQ 199 (568)
T ss_pred eEEEEEeCC------CeEEEEECCCCc-EEEEEe----cC--CcEEEEEECCCCCEEEEEecCC-----EEEEEECCCC
Confidence 455666642 578899998753 111221 11 1122333333446777776554 5888999776
No 233
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.10 E-value=4.9e+02 Score=29.21 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=67.9
Q ss_pred CEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCeEEEEECCCCcEEEecCCCCCCCCCcCcEEE---Ee---CCEE
Q 001895 114 PRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVAT---AV---GTMV 187 (999)
Q Consensus 114 ~~LyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~---~~---g~~i 187 (999)
+..+.|||....-..+.. ...+..-+.+..-++.++.||..+++-+-+-..+ .-.++....-+ .+ ++.|
T Consensus 46 Dd~IyFGGWVHAPa~y~g----k~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkes-ih~~~~WaGEVSdIlYdP~~D~L 120 (339)
T PF09910_consen 46 DDFIYFGGWVHAPAVYEG----KGDGRATIDFRNKYSHVHEYDTENDSVRLLWKES-IHDKTKWAGEVSDILYDPYEDRL 120 (339)
T ss_pred cceEEEeeeecCCceeee----ccCCceEEEEeeccceEEEEEcCCCeEEEEEecc-cCCccccccchhheeeCCCcCEE
Confidence 346779997543211110 0011233555667889999999988733332211 01112221111 12 4577
Q ss_pred EEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCce
Q 001895 188 VIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYE 267 (999)
Q Consensus 188 yv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~ 267 (999)
++.=+- +...=-+|.+|..+.. -.++. .-|.. -.+ .+.+..+| |=.+...-.+.+.+||+.+. +
T Consensus 121 LlAR~D---Gh~nLGvy~ldr~~g~--~~~L~---~~ps~---KG~-~~~D~a~F--~i~~~~~g~~~i~~~Dli~~--~ 184 (339)
T PF09910_consen 121 LLARAD---GHANLGVYSLDRRTGK--AEKLS---SNPSL---KGT-LVHDYACF--GINNFHKGVSGIHCLDLISG--K 184 (339)
T ss_pred EEEecC---CcceeeeEEEcccCCc--eeecc---CCCCc---Cce-EeeeeEEE--eccccccCCceEEEEEccCC--e
Confidence 776542 2333357777777653 44443 23333 122 23331222 22333445788999999999 8
Q ss_pred E
Q 001895 268 W 268 (999)
Q Consensus 268 W 268 (999)
|
T Consensus 185 ~ 185 (339)
T PF09910_consen 185 W 185 (339)
T ss_pred E
Confidence 9
No 234
>PTZ00421 coronin; Provisional
Probab=44.86 E-value=6.4e+02 Score=30.49 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=27.4
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCCceE-EEcccCCCCCCCccceEEEEEeCCEEEEEeccCC
Q 001895 240 YLMAIGGNDGKRPLADVWALDTAAKPYEW-RKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (999)
Q Consensus 240 ~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W-~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~ 302 (999)
.+++.||.|+ .+..||+.+. +- ..+..... .........++.+++.|+.++
T Consensus 139 ~iLaSgs~Dg-----tVrIWDl~tg--~~~~~l~~h~~-----~V~sla~spdG~lLatgs~Dg 190 (493)
T PTZ00421 139 NVLASAGADM-----VVNVWDVERG--KAVEVIKCHSD-----QITSLEWNLDGSLLCTTSKDK 190 (493)
T ss_pred CEEEEEeCCC-----EEEEEECCCC--eEEEEEcCCCC-----ceEEEEEECCCCEEEEecCCC
Confidence 4777777765 5778888776 32 12211111 111222334677788877654
No 235
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=44.38 E-value=32 Score=38.26 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=36.9
Q ss_pred CeEEEecCCCCHH-------------HHHHHHHHhCCC-CCCCCccceeEEEeccccCCCCCh-------HHHHHHHHHh
Q 001895 699 PIKIFGDLHGQFG-------------DLMRLFDEYGSP-STAGDIAYIDYLFLGDYVDRGQHS-------LETITLLLAL 757 (999)
Q Consensus 699 ~i~vvGDiHG~~~-------------~L~~il~~~g~~-~~~~~~~~~~~vfLGDyVDRG~~s-------~evl~ll~~l 757 (999)
.|+-+.|+||++. .+.++.+...-. ...+ ...-+|..||+++.-+.+ .-++.+|-.+
T Consensus 7 tILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~--~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~m 84 (282)
T cd07407 7 NFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKG--VDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRMM 84 (282)
T ss_pred EEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcC--CCEEEEeCCCccCCeeceeeecCCChHHHHHHHhc
Confidence 4778999999864 123333322100 0000 011355699999754322 2234444444
Q ss_pred hhcCCCCEEEecCCcccc
Q 001895 758 KVEYPNNVHLIRGNHEAA 775 (999)
Q Consensus 758 k~~~P~~v~llrGNHE~~ 775 (999)
.-=.+..||||.-
T Consensus 85 -----gyDa~tlGNHEFd 97 (282)
T cd07407 85 -----PYDLLTIGNHELY 97 (282)
T ss_pred -----CCcEEeecccccC
Confidence 2345778999993
No 236
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=43.28 E-value=5.7e+02 Score=29.47 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=34.2
Q ss_pred ccCeEEEEECCCCcEEEecCCCCCCCCCcC-----cEEEEe--CCEEEEEcccCCCCCCcCcEEEEecCCC
Q 001895 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAA-----HVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQ 211 (999)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~-----hsa~~~--g~~iyv~GG~~~~~~~~~dv~vyD~~t~ 211 (999)
-.+.+.+||+.+.+-..--+.+ +.||+. +..+.. |..+||+-= ...+.+-++|+.+.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~n~-----~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELP--EGPRFLVGTYPWMTSLTPDNKTLLFYQF-----SPSPAVGVVDLEGK 138 (352)
T ss_pred CCCEEEEEECccCcEEeEEccC--CCchhhccCccceEEECCCCCEEEEecC-----CCCCEEEEEECCCC
Confidence 4567899999998755443442 455522 222222 346777621 12467899999985
No 237
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=43.25 E-value=3.9e+02 Score=27.51 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=33.1
Q ss_pred CEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 001895 185 TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 185 ~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~ 264 (999)
+..++.|+. ...+++||+.+... -..+. .....-.++....++.+++.|+.++ .+..||+.+.
T Consensus 63 ~~~l~~~~~------~~~i~i~~~~~~~~-~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~ 125 (289)
T cd00200 63 GTYLASGSS------DKTIRLWDLETGEC-VRTLT-----GHTSYVSSVAFSPDGRILSSSSRDK-----TIKVWDVETG 125 (289)
T ss_pred CCEEEEEcC------CCeEEEEEcCcccc-eEEEe-----ccCCcEEEEEEcCCCCEEEEecCCC-----eEEEEECCCc
Confidence 346666664 35789999887421 11111 1111223333344435666666443 6888998755
No 238
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=42.57 E-value=5.4e+02 Score=28.98 Aligned_cols=202 Identities=15% Similarity=0.200 Sum_probs=84.3
Q ss_pred CCCcEEEecCCCCCCCCCcCcEEEEeC-CEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEE
Q 001895 158 LTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV 236 (999)
Q Consensus 158 ~t~~W~~l~~~g~~P~pR~~hsa~~~g-~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~ 236 (999)
.-.+|+++.... +.|-..+....++ +.++++|.. ..+|+ ....-..|+.+... .. -.-..+...
T Consensus 89 gG~tW~~v~l~~--~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~--T~DgG~tW~~~~~~---~~-gs~~~~~r~ 153 (302)
T PF14870_consen 89 GGKTWERVPLSS--KLPGSPFGITALGDGSAELAGDR-------GAIYR--TTDGGKTWQAVVSE---TS-GSINDITRS 153 (302)
T ss_dssp TTSS-EE----T--T-SS-EEEEEEEETTEEEEEETT---------EEE--ESSTTSSEEEEE-S--------EEEEEE-
T ss_pred CCCCcEEeecCC--CCCCCeeEEEEcCCCcEEEEcCC-------CcEEE--eCCCCCCeeEcccC---Cc-ceeEeEEEC
Confidence 346799986432 3344445555554 477777643 23333 22221259987621 11 112223334
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecC
Q 001895 237 GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKH 316 (999)
Q Consensus 237 ~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~ 316 (999)
.++.++++| ..|. -+...|.... .|+....... ++-..+....++.||+.. +.+. ..+...
T Consensus 154 ~dG~~vavs-~~G~----~~~s~~~G~~--~w~~~~r~~~----~riq~~gf~~~~~lw~~~-~Gg~-------~~~s~~ 214 (302)
T PF14870_consen 154 SDGRYVAVS-SRGN----FYSSWDPGQT--TWQPHNRNSS----RRIQSMGFSPDGNLWMLA-RGGQ-------IQFSDD 214 (302)
T ss_dssp TTS-EEEEE-TTSS----EEEEE-TT-S--S-EEEE--SS----S-EEEEEE-TTS-EEEEE-TTTE-------EEEEE-
T ss_pred CCCcEEEEE-Cccc----EEEEecCCCc--cceEEccCcc----ceehhceecCCCCEEEEe-CCcE-------EEEccC
Confidence 554555554 3332 1234566666 7988766544 677777777788998865 3221 122221
Q ss_pred CCCeEEEEECCCCCCCCccee-EEEEE-CCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcccCcCCCCCCCccccc
Q 001895 317 RDGRWEWAIAPGVSPSPRYQH-AAVFV-NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADA 394 (999)
Q Consensus 317 ~~~~W~w~~~~g~~P~~R~~h-sav~~-~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~ 394 (999)
.+..=+|.+.........+.. .++.. ++.+|+.||. ..+++=.-.-.+|.+......
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~----------G~l~~S~DgGktW~~~~~~~~----------- 273 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS----------GTLLVSTDGGKTWQKDRVGEN----------- 273 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST----------T-EEEESSTTSS-EE-GGGTT-----------
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC----------ccEEEeCCCCccceECccccC-----------
Confidence 111114554332221233332 33333 4789999984 224444445668999876422
Q ss_pred CCCCCccCCCCcceeEEEEE-CCEEEEEcC
Q 001895 395 AGGDAAVELTRRCRHAAAAV-GDLIFIYGG 423 (999)
Q Consensus 395 ~~~~~~~~p~~R~~hsa~~~-~~~LyV~GG 423 (999)
.+--...+..+ .++-||+|-
T Consensus 274 ---------~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 274 ---------VPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp ---------SSS---EEEEEETTEEEEE-S
T ss_pred ---------CCCceEEEEEcCCCceEEECC
Confidence 22223344444 569999985
No 239
>PRK13684 Ycf48-like protein; Provisional
Probab=42.01 E-value=5.7e+02 Score=29.07 Aligned_cols=165 Identities=13% Similarity=0.100 Sum_probs=77.1
Q ss_pred EEEEECCCCcEEEecCCCCCCCCCcCcEEEEeCC-EEEEEcccCCCCCCcCcEEEE-ecCCCCCceEEEeecCCCCCCCc
Q 001895 152 VHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGT-MVVIQGGIGPAGLSAEDLHVL-DLTQQRPRWHRVVVQGPGPGPRY 229 (999)
Q Consensus 152 v~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g~-~iyv~GG~~~~~~~~~dv~vy-D~~t~t~kW~~v~~~g~~P~~R~ 229 (999)
+++-+-.-.+|+++... ..-.-+.+....+ .+++.|.. ..++.. |-... .|+.+. .+..+.
T Consensus 154 i~~S~DgG~tW~~~~~~----~~g~~~~i~~~~~g~~v~~g~~-------G~i~~s~~~gg~--tW~~~~----~~~~~~ 216 (334)
T PRK13684 154 IYRTTDGGKNWEALVED----AAGVVRNLRRSPDGKYVAVSSR-------GNFYSTWEPGQT--AWTPHQ----RNSSRR 216 (334)
T ss_pred EEEECCCCCCceeCcCC----CcceEEEEEECCCCeEEEEeCC-------ceEEEEcCCCCC--eEEEee----CCCccc
Confidence 44333344689987642 2223445555544 44444432 123332 22222 498884 345566
Q ss_pred ccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEE-EeCCEEEEEeccCCCCCCcc
Q 001895 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASA-RSDGLLLLCGGRDASSVPLA 308 (999)
Q Consensus 230 ~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~-~~~~~LyvfGG~~~~~~~~~ 308 (999)
-++++...++.+|++|.. |. .++.....--+|+.+..... .......++. ..++.+|++|...
T Consensus 217 l~~i~~~~~g~~~~vg~~-G~------~~~~s~d~G~sW~~~~~~~~--~~~~~l~~v~~~~~~~~~~~G~~G------- 280 (334)
T PRK13684 217 LQSMGFQPDGNLWMLARG-GQ------IRFNDPDDLESWSKPIIPEI--TNGYGYLDLAYRTPGEIWAGGGNG------- 280 (334)
T ss_pred ceeeeEcCCCCEEEEecC-CE------EEEccCCCCCccccccCCcc--ccccceeeEEEcCCCCEEEEcCCC-------
Confidence 666666665578888643 21 22321111128997643211 0112223333 3367888887532
Q ss_pred cEEEEecCCCCeEEEEECCCCCCCCcceeEEEEE-CCEEEEEcCc
Q 001895 309 SAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFV-NARLHVSGGA 352 (999)
Q Consensus 309 d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~-~~~L~V~GG~ 352 (999)
.++.-.+.. . +|.........+...+.+++. +++.|++|..
T Consensus 281 ~v~~S~d~G-~--tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 281 TLLVSKDGG-K--TWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred eEEEeCCCC-C--CCeECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 122211221 2 444443211122344555555 6788888763
No 240
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=41.72 E-value=5.2e+02 Score=28.53 Aligned_cols=114 Identities=14% Similarity=0.048 Sum_probs=68.4
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEE
Q 001895 232 VMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAY 311 (999)
Q Consensus 232 ~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~ 311 (999)
+..+..++.||.--|..|. +.+.+||+.+. +=.+....+. +.+.=++++.+++||..--. -...+
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg--~~~~~~~l~~----~~FgEGit~~~d~l~qLTWk------~~~~f 113 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETG--KVLQSVPLPP----RYFGEGITILGDKLYQLTWK------EGTGF 113 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTS--SEEEEEE-TT----T--EEEEEEETTEEEEEESS------SSEEE
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCC--cEEEEEECCc----cccceeEEEECCEEEEEEec------CCeEE
Confidence 3444344588888887664 68889999998 4433333332 56777788889999998543 34467
Q ss_pred EEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEE
Q 001895 312 GLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWC 376 (999)
Q Consensus 312 ~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~ 376 (999)
.||..+- +-...- +.+..+-+.+.-+..|++.-| ++.++.+||++.+=.
T Consensus 114 ~yd~~tl---~~~~~~---~y~~EGWGLt~dg~~Li~SDG----------S~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 114 VYDPNTL---KKIGTF---PYPGEGWGLTSDGKRLIMSDG----------SSRLYFLDPETFKEV 162 (264)
T ss_dssp EEETTTT---EEEEEE---E-SSS--EEEECSSCEEEE-S----------SSEEEEE-TTT-SEE
T ss_pred EEccccc---eEEEEE---ecCCcceEEEcCCCEEEEECC----------ccceEEECCcccceE
Confidence 7777643 222211 223456677777778888766 467999999987533
No 241
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=41.62 E-value=5.1e+02 Score=28.35 Aligned_cols=170 Identities=15% Similarity=0.052 Sum_probs=86.1
Q ss_pred CEEEEEcccCCCCCCcCcEEEEecCCC---CCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEEC
Q 001895 185 TMVVIQGGIGPAGLSAEDLHVLDLTQQ---RPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDT 261 (999)
Q Consensus 185 ~~iyv~GG~~~~~~~~~dv~vyD~~t~---t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl 261 (999)
+++|++.|.... .++.|..... ..++.+.- .+|.+-.|-+.+++++ .||..=. ..+.+.+||+
T Consensus 31 ~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYng-slYY~~~-----~s~~IvkydL 96 (250)
T PF02191_consen 31 EKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNG-SLYYNKY-----NSRNIVKYDL 96 (250)
T ss_pred CCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECC-cEEEEec-----CCceEEEEEC
Confidence 578888876432 4444432211 11233333 4566667777788888 5666432 3578999999
Q ss_pred CCCCce-EEEcccCCCC---CCCccceEE--EEEeCCEEEEEeccCCCCCCcccEEEEecCCCC-eEEEEECCCCCCCCc
Q 001895 262 AAKPYE-WRKLEPEGEG---PPPCMYATA--SARSDGLLLLCGGRDASSVPLASAYGLAKHRDG-RWEWAIAPGVSPSPR 334 (999)
Q Consensus 262 ~s~~~~-W~~v~~~~~~---P~~r~~~~a--~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~-~W~w~~~~g~~P~~R 334 (999)
.+.... |..++..... |-....++- .++..+-|||+-....... ..-+-.+++.+-. +=+|... .+.+.
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~T~---~~k~~ 172 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWNTS---YPKRS 172 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEEec---cCchh
Confidence 998666 7777554432 111111111 1333344555544322210 0111122221110 1133322 12333
Q ss_pred ceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEc
Q 001895 335 YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDT 378 (999)
Q Consensus 335 ~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v 378 (999)
.+ .+.++=|.||++...+... ..-.++||+.+++=..+
T Consensus 173 ~~-naFmvCGvLY~~~s~~~~~-----~~I~yafDt~t~~~~~~ 210 (250)
T PF02191_consen 173 AG-NAFMVCGVLYATDSYDTRD-----TEIFYAFDTYTGKEEDV 210 (250)
T ss_pred hc-ceeeEeeEEEEEEECCCCC-----cEEEEEEECCCCceece
Confidence 33 3555568899987765443 23467899998865543
No 242
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.53 E-value=1e+02 Score=30.64 Aligned_cols=104 Identities=25% Similarity=0.349 Sum_probs=66.5
Q ss_pred eEEEecCCC--CHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccch
Q 001895 700 IKIFGDLHG--QFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (999)
Q Consensus 700 i~vvGDiHG--~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~ 777 (999)
+.++||+|= .-.+|-.-|+++=.|..-. .++++|++. +-|++++|..+. ..++++||--|.-
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki~-----hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~-- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKIQ-----HILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN-- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCcee-----EEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc--
Confidence 578999984 3345555555554554321 789999965 568899987763 5899999976652
Q ss_pred hhhcCChHHHHHHhCCccchhhhhhhhhhhcccceeEEEcCcEEEecCCccCcccCHHHhhhccCCccc
Q 001895 778 NALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITM 846 (999)
Q Consensus 778 ~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~ 846 (999)
.+|.+.. ...+-.=||-||||-.--...+.+.+.-+.|-+.+
T Consensus 67 -----------~~yP~~k----------------vvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldv 108 (183)
T KOG3325|consen 67 -----------LKYPENK----------------VVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDV 108 (183)
T ss_pred -----------ccCCccc----------------eEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCC
Confidence 2232210 00111238899999765545677778888886543
No 243
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=39.79 E-value=68 Score=35.16 Aligned_cols=65 Identities=23% Similarity=0.344 Sum_probs=42.9
Q ss_pred CeEEEecCCCCHH--HHHHHHHHhCCCCCCCCccceeEEE-eccccCCC-CChHHHHHHHHHhhhcCCCCEEEecCCccc
Q 001895 699 PIKIFGDLHGQFG--DLMRLFDEYGSPSTAGDIAYIDYLF-LGDYVDRG-QHSLETITLLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 699 ~i~vvGDiHG~~~--~L~~il~~~g~~~~~~~~~~~~~vf-LGDyVDRG-~~s~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (999)
+|.+||||=|.-. .+.+.|..+...... ++++ .||..--| .-+-++..+|..+.. .++.+ ||||.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~------D~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iTl-GNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKI------DFVIANGENAAGGKGITPKIAKELLSAGV----DVITM-GNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCC------CEEEECCccccCCCCCCHHHHHHHHhcCC----CEEEe-ccccc
Confidence 4789999999864 345555554321111 3444 79998766 467888888888754 34444 99987
No 244
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=39.76 E-value=5.4e+02 Score=28.13 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=46.5
Q ss_pred cEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEccc--CCCCCC
Q 001895 202 DLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEP--EGEGPP 279 (999)
Q Consensus 202 dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~--~~~~P~ 279 (999)
.+-.+|..+. ..+... .+|..-...+ ...+..+||.||.+. .+++||..+. ..+.. .+. +
T Consensus 206 sV~Fwdaksf----~~lKs~-k~P~nV~SAS--L~P~k~~fVaGged~-----~~~kfDy~Tg----eEi~~~nkgh-~- 267 (334)
T KOG0278|consen 206 SVKFWDAKSF----GLLKSY-KMPCNVESAS--LHPKKEFFVAGGEDF-----KVYKFDYNTG----EEIGSYNKGH-F- 267 (334)
T ss_pred eeEEeccccc----cceeec-cCcccccccc--ccCCCceEEecCcce-----EEEEEeccCC----ceeeecccCC-C-
Confidence 4667777763 222211 4554443332 333447999999775 5778888776 22221 111 1
Q ss_pred CccceEEEEEeCCEEEEEeccCCC
Q 001895 280 PCMYATASARSDGLLLLCGGRDAS 303 (999)
Q Consensus 280 ~r~~~~a~~~~~~~LyvfGG~~~~ 303 (999)
.--|+.-...+|.+|..|..++.
T Consensus 268 -gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 268 -GPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred -CceEEEEECCCCceeeccCCCce
Confidence 11233334558999999987764
No 245
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=38.70 E-value=46 Score=41.66 Aligned_cols=68 Identities=19% Similarity=0.085 Sum_probs=40.7
Q ss_pred cCCeEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCChH------------
Q 001895 697 KAPIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL------------ 748 (999)
Q Consensus 697 ~~~i~vvGDiHG~~~~----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~------------ 748 (999)
.-.|+-..|+||++.. +..+++...-.. ...-+|-.||++...+.+-
T Consensus 25 ~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-----~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~ 99 (649)
T PRK09420 25 DLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEA-----KNSVLVDNGDLIQGSPLGDYMAAKGLKAGDV 99 (649)
T ss_pred eEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhC-----CCEEEEECCCcCCCchhhhhhhhccccCCCc
Confidence 4457889999999743 333444432111 1124666999998655431
Q ss_pred -HHHHHHHHhhhcCCCCEEEecCCccc
Q 001895 749 -ETITLLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 749 -evl~ll~~lk~~~P~~v~llrGNHE~ 774 (999)
-++.+|-.|. -=....||||.
T Consensus 100 ~p~i~amN~lg-----yDa~tlGNHEF 121 (649)
T PRK09420 100 HPVYKAMNTLD-----YDVGNLGNHEF 121 (649)
T ss_pred chHHHHHHhcC-----CcEEeccchhh
Confidence 2455555553 33677899996
No 246
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=38.66 E-value=51 Score=37.33 Aligned_cols=69 Identities=23% Similarity=0.190 Sum_probs=38.5
Q ss_pred eEEEecCCCCHH------HHHHHHHHhCCCCCCCCccceeEEEeccccCCCCC-------------hHHHHHHHHHhhhc
Q 001895 700 IKIFGDLHGQFG------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-------------SLETITLLLALKVE 760 (999)
Q Consensus 700 i~vvGDiHG~~~------~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-------------s~evl~ll~~lk~~ 760 (999)
|+-+-|+||++. .+..+++........ .....-+|..||.+.-++. ..-++.+|-++..
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~-~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~- 80 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAA-EYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGV- 80 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhc-cCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCC-
Confidence 567889999964 343445443211000 0011246679999875432 3344555555533
Q ss_pred CCCCEEEecCCccc
Q 001895 761 YPNNVHLIRGNHEA 774 (999)
Q Consensus 761 ~P~~v~llrGNHE~ 774 (999)
=.+..||||.
T Consensus 81 ----Da~tlGNHEF 90 (313)
T cd08162 81 ----QAIALGNHEF 90 (313)
T ss_pred ----cEEecccccc
Confidence 2567899996
No 247
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.32 E-value=6e+02 Score=27.99 Aligned_cols=93 Identities=22% Similarity=0.339 Sum_probs=58.0
Q ss_pred CcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCC
Q 001895 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP 280 (999)
Q Consensus 201 ~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~ 280 (999)
..+-..|+.+.+..|..+ -..|...+++++++ ++|+|-+.+ .+|.++.++...-|..+.-...
T Consensus 33 ~~~~avd~~sG~~~We~i------lg~RiE~sa~vvgd--fVV~GCy~g-----~lYfl~~~tGs~~w~f~~~~~v---- 95 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAI------LGVRIECSAIVVGD--FVVLGCYSG-----GLYFLCVKTGSQIWNFVILETV---- 95 (354)
T ss_pred ceEEEecCCCCcEEeehh------hCceeeeeeEEECC--EEEEEEccC-----cEEEEEecchhheeeeeehhhh----
Confidence 456678888877789876 46788888888988 477776655 4677777776557876643322
Q ss_pred ccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCC
Q 001895 281 CMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRD 318 (999)
Q Consensus 281 r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~ 318 (999)
...+.+-.++-++.+|-.++. .|.+|+.+.
T Consensus 96 --k~~a~~d~~~glIycgshd~~------~yalD~~~~ 125 (354)
T KOG4649|consen 96 --KVRAQCDFDGGLIYCGSHDGN------FYALDPKTY 125 (354)
T ss_pred --ccceEEcCCCceEEEecCCCc------EEEeccccc
Confidence 222333334444455555443 455555544
No 248
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=36.19 E-value=51 Score=41.08 Aligned_cols=66 Identities=21% Similarity=0.097 Sum_probs=38.4
Q ss_pred CeEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-------------HH
Q 001895 699 PIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-------------LE 749 (999)
Q Consensus 699 ~i~vvGDiHG~~~~----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-------------~e 749 (999)
.|+-..||||++.. +..+++...-.. ...-+|-.||.+.--+.+ .-
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-----~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p 78 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEV-----KNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHP 78 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhC-----CCeEEEECCCcCCCccchhhhhhccccCCCcCh
Confidence 46778999999753 334444432111 112466699999854432 22
Q ss_pred HHHHHHHhhhcCCCCEEEecCCccc
Q 001895 750 TITLLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 750 vl~ll~~lk~~~P~~v~llrGNHE~ 774 (999)
++.+|-.|. -=.+..||||.
T Consensus 79 ~~~~mN~lg-----yDa~tlGNHEF 98 (626)
T TIGR01390 79 VYKAMNLLK-----YDVGNLGNHEF 98 (626)
T ss_pred HHHHHhhcC-----ccEEecccccc
Confidence 445554443 23577899996
No 249
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=36.09 E-value=5.4e+02 Score=28.75 Aligned_cols=139 Identities=12% Similarity=0.143 Sum_probs=72.1
Q ss_pred CEEEEEccc-C--CCCCCc-CcEEEEecCCC---CCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEE
Q 001895 185 TMVVIQGGI-G--PAGLSA-EDLHVLDLTQQ---RPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVW 257 (999)
Q Consensus 185 ~~iyv~GG~-~--~~~~~~-~dv~vyD~~t~---t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~ 257 (999)
..++++|.. . +..... ..+++|++... ..++..+... ..+. .-++++.+++ +|++.-| +.+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g--~V~ai~~~~~-~lv~~~g-------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKG--PVTAICSFNG-RLVVAVG-------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS---EEEEEEETT-EEEEEET-------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecC--cceEhhhhCC-EEEEeec-------CEEE
Confidence 356666642 2 112223 67999999883 1245555422 2222 2456677777 6666555 4788
Q ss_pred EEECCCCCce-EEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcce
Q 001895 258 ALDTAAKPYE-WRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQ 336 (999)
Q Consensus 258 ~yDl~s~~~~-W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~ 336 (999)
.|++... + |........ ..........++.|++ |-.. ....++.|+.... +-...... +.++.-
T Consensus 111 v~~l~~~--~~l~~~~~~~~----~~~i~sl~~~~~~I~v-gD~~----~sv~~~~~~~~~~---~l~~va~d-~~~~~v 175 (321)
T PF03178_consen 111 VYDLDNS--KTLLKKAFYDS----PFYITSLSVFKNYILV-GDAM----KSVSLLRYDEENN---KLILVARD-YQPRWV 175 (321)
T ss_dssp EEEEETT--SSEEEEEEE-B----SSSEEEEEEETTEEEE-EESS----SSEEEEEEETTTE----EEEEEEE-SS-BEE
T ss_pred EEEccCc--ccchhhheecc----eEEEEEEeccccEEEE-EEcc----cCEEEEEEEccCC---EEEEEEec-CCCccE
Confidence 8888877 5 777766544 2355666666776665 3321 1223344444221 22223222 356767
Q ss_pred eEEEEE-CCEEEEE
Q 001895 337 HAAVFV-NARLHVS 349 (999)
Q Consensus 337 hsav~~-~~~L~V~ 349 (999)
.++.++ ++..+++
T Consensus 176 ~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 176 TAAEFLVDEDTIIV 189 (321)
T ss_dssp EEEEEE-SSSEEEE
T ss_pred EEEEEecCCcEEEE
Confidence 777777 6553333
No 250
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=36.08 E-value=7.8e+02 Score=28.91 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=46.4
Q ss_pred eEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeE---EEEECCCCCCCCcc-eeEEEEE
Q 001895 267 EWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRW---EWAIAPGVSPSPRY-QHAAVFV 342 (999)
Q Consensus 267 ~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W---~w~~~~g~~P~~R~-~hsav~~ 342 (999)
.|+.+..... ..........++.++++|... .++.-... ...| +|.+..- +..++ -.+++..
T Consensus 271 ~W~~~~~~~~----~~l~~v~~~~dg~l~l~g~~G-------~l~~S~d~-G~~~~~~~f~~~~~--~~~~~~l~~v~~~ 336 (398)
T PLN00033 271 YWQPHNRASA----RRIQNMGWRADGGLWLLTRGG-------GLYVSKGT-GLTEEDFDFEEADI--KSRGFGILDVGYR 336 (398)
T ss_pred ceEEecCCCc----cceeeeeEcCCCCEEEEeCCc-------eEEEecCC-CCcccccceeeccc--CCCCcceEEEEEc
Confidence 4888765433 333334445678888876432 12222121 1234 3444432 12232 2334444
Q ss_pred -CCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEccc
Q 001895 343 -NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 380 (999)
Q Consensus 343 -~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~ 380 (999)
++.++++|.. .-++.-...-.+|.....
T Consensus 337 ~d~~~~a~G~~----------G~v~~s~D~G~tW~~~~~ 365 (398)
T PLN00033 337 SKKEAWAAGGS----------GILLRSTDGGKSWKRDKG 365 (398)
T ss_pred CCCcEEEEECC----------CcEEEeCCCCcceeEccc
Confidence 5678888763 225555566778998763
No 251
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=35.58 E-value=49 Score=44.45 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=15.1
Q ss_pred HHHHHHHHHH-cCCcEEEEecc
Q 001895 884 PDRVMEFCNN-NDLQLIVRAHE 904 (999)
Q Consensus 884 ~~~~~~fl~~-~~l~~iiR~H~ 904 (999)
++++.+..++ -++++||-||+
T Consensus 256 en~~~~la~~~~gID~Il~GHs 277 (1163)
T PRK09419 256 EDSVYDLAEKTKGIDAIVAGHQ 277 (1163)
T ss_pred chHHHHHHHhCCCCcEEEeCCC
Confidence 3455566644 58999999996
No 252
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=35.05 E-value=1.1e+02 Score=31.78 Aligned_cols=92 Identities=22% Similarity=0.288 Sum_probs=63.8
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCccccchhhhcCChHH---HHH---------HhCCccchhh
Q 001895 732 IDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIE---CIE---------RMGERDGIWA 799 (999)
Q Consensus 732 ~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e---~~~---------~~g~~~~~~~ 799 (999)
..+|||| .|-+.-|.+.||-+|+.+|-.+.++ .|+-|.|..+..--|... |.. ..|...-..+
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 3799998 5999999999999999999766655 899999987765444321 111 1122222345
Q ss_pred hhhhhhhhcccceeEEEcCcEEEecC-Ccc
Q 001895 800 WHRINRLFNWLPLAALIEKKIICMHG-GIG 828 (999)
Q Consensus 800 ~~~~~~~f~~LPlaa~i~~~il~vHg-Gi~ 828 (999)
|..+..+.-.+++...+...++.+-| |..
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NGPGTC 144 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNGPGTC 144 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECCCCcE
Confidence 66777777777888777777777777 554
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=34.89 E-value=3.5e+02 Score=32.81 Aligned_cols=100 Identities=12% Similarity=0.100 Sum_probs=55.1
Q ss_pred ccCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeC--CEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecC---
Q 001895 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG--TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQG--- 222 (999)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g--~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g--- 222 (999)
.-.+||+|++..+.|-..-... .+ .--++.++ +.++.+||.. ..+..||+.+.. +-..+....
T Consensus 153 sg~evYRlNLEqGrfL~P~~~~---~~--~lN~v~in~~hgLla~Gt~~------g~VEfwDpR~ks-rv~~l~~~~~v~ 220 (703)
T KOG2321|consen 153 SGSEVYRLNLEQGRFLNPFETD---SG--ELNVVSINEEHGLLACGTED------GVVEFWDPRDKS-RVGTLDAASSVN 220 (703)
T ss_pred cCcceEEEEccccccccccccc---cc--cceeeeecCccceEEecccC------ceEEEecchhhh-hheeeecccccC
Confidence 4459999999999987543221 11 12233333 4788899853 467888887652 233333221
Q ss_pred CCCCCCc--ccEEEEECCcEEEE-EccCCCCCCCCeEEEEECCCC
Q 001895 223 PGPGPRY--GHVMALVGQRYLMA-IGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 223 ~~P~~R~--~h~~~v~~~~~Lyv-~GG~~g~~~~ndv~~yDl~s~ 264 (999)
..|..-. .-++..+.++-|-+ +|-.+| .++.||+.+.
T Consensus 221 s~pg~~~~~svTal~F~d~gL~~aVGts~G-----~v~iyDLRa~ 260 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDGLHVAVGTSTG-----SVLIYDLRAS 260 (703)
T ss_pred CCccccccCcceEEEecCCceeEEeeccCC-----cEEEEEcccC
Confidence 2333222 23444454422333 333333 6899999876
No 254
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=34.16 E-value=51 Score=42.14 Aligned_cols=67 Identities=22% Similarity=0.125 Sum_probs=38.9
Q ss_pred CCeEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCccceeEEEeccccCCCCCh--------------
Q 001895 698 APIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-------------- 747 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-------------- 747 (999)
-.|+-..||||++.. +..+++...-.. ...-+|..||++.--+..
T Consensus 116 LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~-----~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~ 190 (814)
T PRK11907 116 VRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKEN-----PNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQ 190 (814)
T ss_pred EEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhC-----CCEEEEecCCCCCCCcccchhhhccccccCcc
Confidence 457889999999643 223334332111 112466699998754322
Q ss_pred HHHHHHHHHhhhcCCCCEEEecCCccc
Q 001895 748 LETITLLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 748 ~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (999)
.-++.+|-.|. -=.+..||||.
T Consensus 191 ~P~i~amN~LG-----yDA~tLGNHEF 212 (814)
T PRK11907 191 HPMYAALEALG-----FDAGTLGNHEF 212 (814)
T ss_pred hHHHHHHhccC-----CCEEEechhhc
Confidence 12556665553 33577899997
No 255
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=32.70 E-value=6.6e+02 Score=28.05 Aligned_cols=122 Identities=12% Similarity=0.159 Sum_probs=68.4
Q ss_pred CeEEEEECCCC-----cEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCC
Q 001895 150 ADVHCYDVLTN-----KWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPG 224 (999)
Q Consensus 150 ~dv~~yD~~t~-----~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~ 224 (999)
..++.|+.... +++.+... ..+-.-++.+.+++++++.-| +.+++|++.... +|.... ..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~---~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~-~l~~~~---~~ 126 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST---EVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSK-TLLKKA---FY 126 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE---EESS-EEEEEEETTEEEEEET--------TEEEEEEEETTS-SEEEEE---EE
T ss_pred cEEEEEEEEcccccceEEEEEEEE---eecCcceEhhhhCCEEEEeec--------CEEEEEEccCcc-cchhhh---ee
Confidence 57889998884 56665443 122235677777888777766 478899988763 477766 33
Q ss_pred CCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEe-CCEEEEE
Q 001895 225 PGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARS-DGLLLLC 297 (999)
Q Consensus 225 P~~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~-~~~Lyvf 297 (999)
..+-+..++.++++ +|++.--..+ -.++.|+.... +-..++.... .+..+++... ++..+++
T Consensus 127 ~~~~~i~sl~~~~~-~I~vgD~~~s----v~~~~~~~~~~--~l~~va~d~~----~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 127 DSPFYITSLSVFKN-YILVGDAMKS----VSLLRYDEENN--KLILVARDYQ----PRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp -BSSSEEEEEEETT-EEEEEESSSS----EEEEEEETTTE---EEEEEEESS-----BEEEEEEEE-SSSEEEE
T ss_pred cceEEEEEEecccc-EEEEEEcccC----EEEEEEEccCC--EEEEEEecCC----CccEEEEEEecCCcEEEE
Confidence 34446666777776 5554322222 23456676554 4555544332 2344444443 5444443
No 256
>PRK04043 tolB translocation protein TolB; Provisional
Probab=32.56 E-value=8.9e+02 Score=28.54 Aligned_cols=193 Identities=10% Similarity=0.084 Sum_probs=98.5
Q ss_pred cCeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEe-CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCC
Q 001895 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (999)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~ 227 (999)
..++|.+|+.+++=+.+.... .........- +.+|++.-...+ ..++|++|+.+. +++++. ..+.
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~----g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g--~~~~LT---~~~~- 277 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQ----GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTK--TLTQIT---NYPG- 277 (419)
T ss_pred CCEEEEEECCCCcEEEEecCC----CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCC--cEEEcc---cCCC-
Confidence 458999999998777775431 1111111222 335655433211 368999999875 477775 2221
Q ss_pred CcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCC-
Q 001895 228 RYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSV- 305 (999)
Q Consensus 228 R~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~- 305 (999)
.......- ++.+||+.....+ ..++|++|+.+. +.+++...+. ... ....+++.+++-.......
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g--~~~rlt~~g~------~~~-~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSG--SVEQVVFHGK------NNS-SVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred -ccCccEECCCCCEEEEEECCCC---CceEEEEECCCC--CeEeCccCCC------cCc-eECCCCCEEEEEEcCCCccc
Confidence 12222222 3336666654432 368999999988 7777654332 122 3334555444444322111
Q ss_pred --CcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEccc
Q 001895 306 --PLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 380 (999)
Q Consensus 306 --~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~~ 380 (999)
...+++.++.... .+ ...... .....-...-+++.+++-...+ + ...++++++....=..++.
T Consensus 345 ~~~~~~I~v~d~~~g-~~--~~LT~~---~~~~~p~~SPDG~~I~f~~~~~-~-----~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 345 GKNTFNLYLISTNSD-YI--RRLTAN---GVNQFPRFSSDGGSIMFIKYLG-N-----QSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCCCcEEEEEECCCC-Ce--EECCCC---CCcCCeEECCCCCEEEEEEccC-C-----cEEEEEEecCCCeeEEeec
Confidence 1246777766544 33 333221 1222222223555444433221 1 3468899987765555543
No 257
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.21 E-value=9.7e+02 Score=29.70 Aligned_cols=125 Identities=20% Similarity=0.337 Sum_probs=64.3
Q ss_pred CCEEEEEcccCCCCCCcCcEEEEecCCCC----CceEEEeecCCCC-CCCcc-cEEEEECCcEEEEEccCCCCCCCCeEE
Q 001895 184 GTMVVIQGGIGPAGLSAEDLHVLDLTQQR----PRWHRVVVQGPGP-GPRYG-HVMALVGQRYLMAIGGNDGKRPLADVW 257 (999)
Q Consensus 184 g~~iyv~GG~~~~~~~~~dv~vyD~~t~t----~kW~~v~~~g~~P-~~R~~-h~~~v~~~~~Lyv~GG~~g~~~~ndv~ 257 (999)
++.+++-||.+ ..+++||+++.+ .....++.. .++ .++.. ++.+.-+.+.++|-||..+ ++-
T Consensus 129 ~~~lvaSgGLD------~~IflWDin~~~~~l~~s~n~~t~~-sl~sG~k~siYSLA~N~t~t~ivsGgtek-----~lr 196 (735)
T KOG0308|consen 129 NNELVASGGLD------RKIFLWDINTGTATLVASFNNVTVN-SLGSGPKDSIYSLAMNQTGTIIVSGGTEK-----DLR 196 (735)
T ss_pred CceeEEecCCC------ccEEEEEccCcchhhhhhccccccc-cCCCCCccceeeeecCCcceEEEecCccc-----ceE
Confidence 56899999974 578899988542 112233222 233 33322 2333334447888888754 788
Q ss_pred EEECCCCCceEEEcccCCCCCCCccceEEE-EEeCCEEEEEeccCCCC-----CCcccEEEEecCCCCeEEEEECC
Q 001895 258 ALDTAAKPYEWRKLEPEGEGPPPCMYATAS-ARSDGLLLLCGGRDASS-----VPLASAYGLAKHRDGRWEWAIAP 327 (999)
Q Consensus 258 ~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~-~~~~~~LyvfGG~~~~~-----~~~~d~~~~~~~~~~~W~w~~~~ 327 (999)
.||+.+.. +-.++. +. +...-+. +..+|.-.+-|+.++.- .....+..|-.+.++.|.|..-+
T Consensus 197 ~wDprt~~-kimkLr--GH----TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 197 LWDPRTCK-KIMKLR--GH----TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred Eecccccc-ceeeee--cc----ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 89998751 112221 11 0111111 22245555555544321 11233444666777788877653
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=31.97 E-value=8.5e+02 Score=28.11 Aligned_cols=75 Identities=7% Similarity=-0.098 Sum_probs=44.8
Q ss_pred CEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccC----CCCCCCCeEEEEE
Q 001895 185 TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGN----DGKRPLADVWALD 260 (999)
Q Consensus 185 ~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~----~g~~~~ndv~~yD 260 (999)
..+||.-.... ...+.++++|..+. ..+. ..+.+...|.+..-+++.||+.-.+ .-....+.+.+||
T Consensus 13 ~~v~V~d~~~~--~~~~~v~ViD~~~~----~v~g---~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 13 RRVYVLDPGHF--AATTQVYTIDGEAG----RVLG---MTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred CEEEEECCccc--ccCceEEEEECCCC----EEEE---EEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 35677654311 22378999999883 3333 3344444454444455589998763 1223457899999
Q ss_pred CCCCCceE
Q 001895 261 TAAKPYEW 268 (999)
Q Consensus 261 l~s~~~~W 268 (999)
+.+.....
T Consensus 84 ~~t~~~~~ 91 (352)
T TIGR02658 84 PQTHLPIA 91 (352)
T ss_pred CccCcEEe
Confidence 99884333
No 259
>PRK03629 tolB translocation protein TolB; Provisional
Probab=31.68 E-value=9.1e+02 Score=28.39 Aligned_cols=189 Identities=12% Similarity=0.113 Sum_probs=90.4
Q ss_pred CeEEEEECCCCcEEEecCCCCCCCCCcCcEEEEe--CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCC
Q 001895 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (999)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~ 227 (999)
..+|++|+.+++-+.+.... ....+.+.. +.+|++..... ...++|++|+.+.. ..++. ..+.
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~-----~~~~~~~~SPDG~~La~~~~~~----g~~~I~~~d~~tg~--~~~lt---~~~~- 287 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP-----RHNGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQ--IRQVT---DGRS- 287 (429)
T ss_pred cEEEEEECCCCCeEEccCCC-----CCcCCeEECCCCCEEEEEEcCC----CCcEEEEEECCCCC--EEEcc---CCCC-
Confidence 57888998888766665431 111112222 33565543221 12469999998753 55553 1111
Q ss_pred CcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCC
Q 001895 228 RYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP 306 (999)
Q Consensus 228 R~~h~~~v~-~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~ 306 (999)
........ ++++|++.....+ ..++|.+|+.+. .-+++..... .........+++.+++.+....
T Consensus 288 -~~~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g--~~~~lt~~~~-----~~~~~~~SpDG~~Ia~~~~~~g--- 353 (429)
T PRK03629 288 -NNTEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGG--APQRITWEGS-----QNQDADVSSDGKFMVMVSSNGG--- 353 (429)
T ss_pred -CcCceEECCCCCEEEEEeCCCC---CceEEEEECCCC--CeEEeecCCC-----CccCEEECCCCCEEEEEEccCC---
Confidence 11122222 2324444332222 358999999877 5555533221 1112233445655555444322
Q ss_pred cccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEcc
Q 001895 307 LASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTK 379 (999)
Q Consensus 307 ~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v~ 379 (999)
...++.++..+. .++.. ... .........-+++++++.+..+. ...+++.+.....=..+.
T Consensus 354 ~~~I~~~dl~~g-~~~~L--t~~---~~~~~p~~SpDG~~i~~~s~~~~------~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 354 QQHIAKQDLATG-GVQVL--TDT---FLDETPSIAPNGTMVIYSSSQGM------GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CceEEEEECCCC-CeEEe--CCC---CCCCCceECCCCCEEEEEEcCCC------ceEEEEEECCCCCeEECc
Confidence 235666666544 33322 211 01111122246777777665432 234777777655444443
No 260
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=31.64 E-value=64 Score=35.40 Aligned_cols=64 Identities=28% Similarity=0.288 Sum_probs=41.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCccceeEEEeccccCCCCChHHHHHH---HHHhhhcCCCCEEEecCCccc
Q 001895 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITL---LLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~l---l~~lk~~~P~~v~llrGNHE~ 774 (999)
.+++.|+|.|....+.. ..|+.+ -++-+||+-.-|. +-||+.+ |-+|.-+ +=+.|+||||.
T Consensus 62 ~r~VcisdtH~~~~~i~------~~p~gD------vlihagdfT~~g~-~~ev~~fn~~~gslph~---yKIVIaGNHEL 125 (305)
T KOG3947|consen 62 ARFVCISDTHELTFDIN------DIPDGD------VLIHAGDFTNLGL-PEEVIKFNEWLGSLPHE---YKIVIAGNHEL 125 (305)
T ss_pred eEEEEecCcccccCccc------cCCCCc------eEEeccCCccccC-HHHHHhhhHHhccCcce---eeEEEeeccce
Confidence 45899999998776654 234333 4577999988664 3455533 3333322 45789999998
Q ss_pred cch
Q 001895 775 ADI 777 (999)
Q Consensus 775 ~~~ 777 (999)
-.-
T Consensus 126 tFd 128 (305)
T KOG3947|consen 126 TFD 128 (305)
T ss_pred eec
Confidence 543
No 261
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=29.61 E-value=9.3e+02 Score=27.86 Aligned_cols=195 Identities=13% Similarity=0.078 Sum_probs=92.8
Q ss_pred cCcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEECCcEEEEEccCCCCC------CCCeEEEEECCCCCceEEEccc
Q 001895 200 AEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKR------PLADVWALDTAAKPYEWRKLEP 273 (999)
Q Consensus 200 ~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~~~~~Lyv~GG~~g~~------~~ndv~~yDl~s~~~~W~~v~~ 273 (999)
...++++|+.+.. ...- ..+..+... ++-..++..+++...+... .-..+|++.+.+..-.=..+-.
T Consensus 149 ~~~l~v~Dl~tg~--~l~d----~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe 221 (414)
T PF02897_consen 149 WYTLRVFDLETGK--FLPD----GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFE 221 (414)
T ss_dssp EEEEEEEETTTTE--EEEE----EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC
T ss_pred eEEEEEEECCCCc--CcCC----cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEe
Confidence 3578999998852 2221 112222222 5455553444444444332 2678999998776211112211
Q ss_pred CCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCC----CeEEEEECCCCCCCCcceeEEEEECCEEEEE
Q 001895 274 EGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRD----GRWEWAIAPGVSPSPRYQHAAVFVNARLHVS 349 (999)
Q Consensus 274 ~~~~P~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~----~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~ 349 (999)
.... +..........+++.+++.-..... .+++|.++.... ..|...... ..-..+.+...++.+|+.
T Consensus 222 ~~~~--~~~~~~~~~s~d~~~l~i~~~~~~~--~s~v~~~d~~~~~~~~~~~~~l~~~----~~~~~~~v~~~~~~~yi~ 293 (414)
T PF02897_consen 222 EPDE--PFWFVSVSRSKDGRYLFISSSSGTS--ESEVYLLDLDDGGSPDAKPKLLSPR----EDGVEYYVDHHGDRLYIL 293 (414)
T ss_dssp -TTC--TTSEEEEEE-TTSSEEEEEEESSSS--EEEEEEEECCCTTTSS-SEEEEEES----SSS-EEEEEEETTEEEEE
T ss_pred ecCC--CcEEEEEEecCcccEEEEEEEcccc--CCeEEEEeccccCCCcCCcEEEeCC----CCceEEEEEccCCEEEEe
Confidence 1111 1113333334455544443332221 367787777652 345544332 222233444558999998
Q ss_pred cCcCCCCCCcccCCeEEEEECCCCe---EEE-cccCcCCCCCCCcccccCCCCCccCCCCcceeEEEEECCEEEEEcCCC
Q 001895 350 GGALGGGRMVEDSSSVAVLDTAAGV---WCD-TKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR 425 (999)
Q Consensus 350 GG~~~~~~~~~~~~~v~vyD~~t~~---W~~-v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyV~GG~~ 425 (999)
-..+.. ...|..+++.+.. |.. +... .....--.+...+++|++.-=.+
T Consensus 294 Tn~~a~------~~~l~~~~l~~~~~~~~~~~l~~~---------------------~~~~~l~~~~~~~~~Lvl~~~~~ 346 (414)
T PF02897_consen 294 TNDDAP------NGRLVAVDLADPSPAEWWTVLIPE---------------------DEDVSLEDVSLFKDYLVLSYREN 346 (414)
T ss_dssp E-TT-T------T-EEEEEETTSTSGGGEEEEEE-----------------------SSSEEEEEEEEETTEEEEEEEET
T ss_pred eCCCCC------CcEEEEecccccccccceeEEcCC---------------------CCceeEEEEEEECCEEEEEEEEC
Confidence 663322 4578999998876 664 3322 01223445556688877764322
Q ss_pred CCcCcCcEEEeecc
Q 001895 426 GGVLLDDLLVAEDL 439 (999)
Q Consensus 426 ~~~~l~Dv~~ld~~ 439 (999)
+ ..-+.+++..
T Consensus 347 ~---~~~l~v~~~~ 357 (414)
T PF02897_consen 347 G---SSRLRVYDLD 357 (414)
T ss_dssp T---EEEEEEEETT
T ss_pred C---ccEEEEEECC
Confidence 2 3345555554
No 262
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=29.17 E-value=9.4e+02 Score=27.78 Aligned_cols=185 Identities=21% Similarity=0.220 Sum_probs=87.6
Q ss_pred cCeEEEEECCCCc-EEEecCCCCCCCCCcCcEEEEe---CCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCC
Q 001895 149 TADVHCYDVLTNK-WSRITPFGEPPTPRAAHVATAV---GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPG 224 (999)
Q Consensus 149 ~~dv~~yD~~t~~-W~~l~~~g~~P~pR~~hsa~~~---g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~ 224 (999)
.+.+..+|..+++ -.+++..+ .-|....+ +..+|+.+.. ..+.++|+.+.. .+. ..
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~------~~h~~~~~s~Dgr~~yv~~rd-------g~vsviD~~~~~----~v~---~i 74 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG------APHAGLKFSPDGRYLYVANRD-------GTVSVIDLATGK----VVA---TI 74 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST------TEEEEEE-TT-SSEEEEEETT-------SEEEEEETTSSS----EEE---EE
T ss_pred CCEEEEEECCCCeEEEEEcCCC------CceeEEEecCCCCEEEEEcCC-------CeEEEEECCccc----EEE---EE
Confidence 4588899998876 44444321 12554444 3488988631 468999999853 222 23
Q ss_pred CCCCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCCceEEE-cccC--CC-CCCCccceEEEEEeCCEEEEEec
Q 001895 225 PGPRYGHVMALVG-QRYLMAIGGNDGKRPLADVWALDTAAKPYEWRK-LEPE--GE-GPPPCMYATASARSDGLLLLCGG 299 (999)
Q Consensus 225 P~~R~~h~~~v~~-~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~-v~~~--~~-~P~~r~~~~a~~~~~~~LyvfGG 299 (999)
+.+...+++++-. ++++|+ +.+. -+++..+|..+. +=.+ ++.. .. .+.+ +...-.....+..|++--
T Consensus 75 ~~G~~~~~i~~s~DG~~~~v-~n~~----~~~v~v~D~~tl--e~v~~I~~~~~~~~~~~~-Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 75 KVGGNPRGIAVSPDGKYVYV-ANYE----PGTVSVIDAETL--EPVKTIPTGGMPVDGPES-RVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp E-SSEEEEEEE--TTTEEEE-EEEE----TTEEEEEETTT----EEEEEE--EE-TTTS----EEEEEE-SSSSEEEEEE
T ss_pred ecCCCcceEEEcCCCCEEEE-EecC----CCceeEeccccc--cceeecccccccccccCC-CceeEEecCCCCEEEEEE
Confidence 4455555555544 434544 3322 257889998775 2222 2111 11 1111 222222334455555533
Q ss_pred cCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEEC-CEEEEEcCcCCCCCCcccCCeEEEEECCCCeEEEc
Q 001895 300 RDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVN-ARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDT 378 (999)
Q Consensus 300 ~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~~-~~L~V~GG~~~~~~~~~~~~~v~vyD~~t~~W~~v 378 (999)
.+ ...+|.++........ ... ....++-|-+.+-. ++.|+.+ ... .+.+-+.|.++++=..+
T Consensus 147 kd-----~~~I~vVdy~d~~~~~-~~~---i~~g~~~~D~~~dpdgry~~va-~~~-------sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 147 KD-----TGEIWVVDYSDPKNLK-VTT---IKVGRFPHDGGFDPDGRYFLVA-ANG-------SNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp TT-----TTEEEEEETTTSSCEE-EEE---EE--TTEEEEEE-TTSSEEEEE-EGG-------GTEEEEEETTTTEEEEE
T ss_pred cc-----CCeEEEEEeccccccc-eee---ecccccccccccCcccceeeec-ccc-------cceeEEEeeccceEEEE
Confidence 22 3456666543321111 111 12455566665554 3444443 222 46788999998865544
No 263
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=28.44 E-value=8.7e+02 Score=28.09 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=65.3
Q ss_pred CcEEEEecCCCCCceEEEeecCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCC
Q 001895 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV--GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGP 278 (999)
Q Consensus 201 ~dv~vyD~~t~t~kW~~v~~~g~~P~~R~~h~~~v~--~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P 278 (999)
+.+.++|..+.. .-.+++ .+-.-|....+ +++++|+.+ .++ .+.++|+.+. +=..--..+.
T Consensus 16 ~~v~viD~~t~~-~~~~i~------~~~~~h~~~~~s~Dgr~~yv~~-rdg-----~vsviD~~~~--~~v~~i~~G~-- 78 (369)
T PF02239_consen 16 GSVAVIDGATNK-VVARIP------TGGAPHAGLKFSPDGRYLYVAN-RDG-----TVSVIDLATG--KVVATIKVGG-- 78 (369)
T ss_dssp TEEEEEETTT-S-EEEEEE-------STTEEEEEE-TT-SSEEEEEE-TTS-----EEEEEETTSS--SEEEEEE-SS--
T ss_pred CEEEEEECCCCe-EEEEEc------CCCCceeEEEecCCCCEEEEEc-CCC-----eEEEEECCcc--cEEEEEecCC--
Confidence 579999998853 234443 22223655444 245899985 333 6899999887 3211111121
Q ss_pred CCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCC---CCCcceeEEEEECCEEEEEcCcCCC
Q 001895 279 PPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVS---PSPRYQHAAVFVNARLHVSGGALGG 355 (999)
Q Consensus 279 ~~r~~~~a~~~~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~---P~~R~~hsav~~~~~L~V~GG~~~~ 355 (999)
.....+...+|+.++.+.... +.+-.+|..+...-......+.. +.+|...-........||+--
T Consensus 79 ---~~~~i~~s~DG~~~~v~n~~~-----~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l---- 146 (369)
T PF02239_consen 79 ---NPRGIAVSPDGKYVYVANYEP-----GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL---- 146 (369)
T ss_dssp ---EEEEEEE--TTTEEEEEEEET-----TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE----
T ss_pred ---CcceEEEcCCCCEEEEEecCC-----CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE----
Confidence 122233334665555554322 23445555544223333333221 234443333334556566632
Q ss_pred CCCcccCCeEEEEECCCC
Q 001895 356 GRMVEDSSSVAVLDTAAG 373 (999)
Q Consensus 356 ~~~~~~~~~v~vyD~~t~ 373 (999)
.....+|+.|....
T Consensus 147 ----kd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 147 ----KDTGEIWVVDYSDP 160 (369)
T ss_dssp ----TTTTEEEEEETTTS
T ss_pred ----ccCCeEEEEEeccc
Confidence 23567999997654
No 264
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=27.44 E-value=8.4e+02 Score=26.63 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=31.8
Q ss_pred eEEEEECCCCcEEEecCCCCCCCCCcCcEEEEeC-CEEEEEcccCCCCCCcCcEEEEecCCC
Q 001895 151 DVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQ 211 (999)
Q Consensus 151 dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~g-~~iyv~GG~~~~~~~~~dv~vyD~~t~ 211 (999)
.+|+.|+++++.++.--- .--+-|+++.-+ +--++.|+.+ ..+-++|..+.
T Consensus 137 ~~y~~dlE~G~i~r~~rG----HtDYvH~vv~R~~~~qilsG~ED------GtvRvWd~kt~ 188 (325)
T KOG0649|consen 137 VIYQVDLEDGRIQREYRG----HTDYVHSVVGRNANGQILSGAED------GTVRVWDTKTQ 188 (325)
T ss_pred EEEEEEecCCEEEEEEcC----CcceeeeeeecccCcceeecCCC------ccEEEEecccc
Confidence 678999999987765321 223456555533 2445556642 45778898875
No 265
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=27.30 E-value=1e+03 Score=27.48 Aligned_cols=92 Identities=11% Similarity=0.224 Sum_probs=49.7
Q ss_pred eEEEEECCCCcEEEecCCCCCCCCCcCcEEEE--eCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCC
Q 001895 151 DVHCYDVLTNKWSRITPFGEPPTPRAAHVATA--VGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (999)
Q Consensus 151 dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~--~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R 228 (999)
--+.++..+..|--.-+ .-.-.-+.+. +++.++.-|++. ..+.+|...+..-+|........+---+
T Consensus 87 ~AflW~~~~ge~~~elt-----gHKDSVt~~~FshdgtlLATGdms------G~v~v~~~stg~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 87 LAFLWDISTGEFAGELT-----GHKDSVTCCSFSHDGTLLATGDMS------GKVLVFKVSTGGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred eEEEEEccCCcceeEec-----CCCCceEEEEEccCceEEEecCCC------ccEEEEEcccCceEEEeecccCceEEEE
Confidence 45778888877554322 1111122222 356788888864 4677777776655566542221221111
Q ss_pred cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 001895 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (999)
Q Consensus 229 ~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~ 264 (999)
. +....++++|-.+| .+|+|.+.+.
T Consensus 156 W------Hp~a~illAG~~DG-----svWmw~ip~~ 180 (399)
T KOG0296|consen 156 W------HPRAHILLAGSTDG-----SVWMWQIPSQ 180 (399)
T ss_pred e------cccccEEEeecCCC-----cEEEEECCCc
Confidence 1 11125677776666 6899988774
No 266
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=26.81 E-value=4.9e+02 Score=28.09 Aligned_cols=135 Identities=13% Similarity=0.182 Sum_probs=68.0
Q ss_pred eEEEEECCC-CcEEEecCCCCCCCCCcCcEEEE-e-CCEEEEEcccCCCCCCcCcEEEE-ecCCCCCceEEEeecCCCCC
Q 001895 151 DVHCYDVLT-NKWSRITPFGEPPTPRAAHVATA-V-GTMVVIQGGIGPAGLSAEDLHVL-DLTQQRPRWHRVVVQGPGPG 226 (999)
Q Consensus 151 dv~~yD~~t-~~W~~l~~~g~~P~pR~~hsa~~-~-g~~iyv~GG~~~~~~~~~dv~vy-D~~t~t~kW~~v~~~g~~P~ 226 (999)
....|.... .+|+...... ......+.+.+ . ++.|+++--.. ... .++.+ ..+.. ..|+.+... .+|.
T Consensus 135 ~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~---~~~~~~S~D~G-~TWs~~~~~-~~~~ 206 (275)
T PF13088_consen 135 AFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND---DIYISRSTDGG-RTWSPPQPT-NLPN 206 (275)
T ss_dssp EEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST---EEEEEEESSTT-SS-EEEEEE-ECSS
T ss_pred eEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC---cEEEEEECCCC-CcCCCceec-ccCc
Confidence 344455554 4598886542 22233333333 3 45787776542 111 33333 33332 359986644 5677
Q ss_pred CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECC-CCCceEEEcccCCCCCC-CccceEEEEEeCCEEEE
Q 001895 227 PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTA-AKPYEWRKLEPEGEGPP-PCMYATASARSDGLLLL 296 (999)
Q Consensus 227 ~R~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~-s~~~~W~~v~~~~~~P~-~r~~~~a~~~~~~~Lyv 296 (999)
+.....++.+.++.++++...... ..+-...+... .. +|.........+. ...|-..+...+++|||
T Consensus 207 ~~~~~~~~~~~~g~~~~~~~~~~~-r~~l~l~~S~D~g~--tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 207 PNSSISLVRLSDGRLLLVYNNPDG-RSNLSLYVSEDGGK--TWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CCEEEEEEECTTSEEEEEEECSST-SEEEEEEEECTTCE--EEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred ccCCceEEEcCCCCEEEEEECCCC-CCceEEEEEeCCCC--cCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 777777766666677777773222 22222222332 34 8987644433221 12344444555778886
No 267
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=26.52 E-value=1.2e+02 Score=37.20 Aligned_cols=37 Identities=24% Similarity=0.089 Sum_probs=23.1
Q ss_pred eEEEeccccCCCCCh-----HHHHHHHHHhhhcCCCCEEEecCCccc
Q 001895 733 DYLFLGDYVDRGQHS-----LETITLLLALKVEYPNNVHLIRGNHEA 774 (999)
Q Consensus 733 ~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~P~~v~llrGNHE~ 774 (999)
-+|.-||++..-+.+ ...+.+|-++. -=.+..||||.
T Consensus 52 l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~g-----~Da~~lGNHEF 93 (550)
T TIGR01530 52 LVLHAGDAIIGTLYFTLFGGRADAALMNAAG-----FDFFTLGNHEF 93 (550)
T ss_pred EEEECCCCCCCccchhhcCCHHHHHHHhccC-----CCEEEeccccc
Confidence 566799998754322 22344444443 34678899997
No 268
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=26.46 E-value=6.3e+02 Score=30.06 Aligned_cols=212 Identities=15% Similarity=0.010 Sum_probs=0.0
Q ss_pred EEEEEc--ccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCCc-ccEEEEECCcEEEEEccCCCCCCCCeEE-----
Q 001895 186 MVVIQG--GIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY-GHVMALVGQRYLMAIGGNDGKRPLADVW----- 257 (999)
Q Consensus 186 ~iyv~G--G~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R~-~h~~~v~~~~~Lyv~GG~~g~~~~ndv~----- 257 (999)
.+|+|| |++.-+..-+...++++.-.. |-.+......-...- .|+++...++.||.+|=++......++.
T Consensus 69 ~v~~~Gsn~~~eLGlg~de~~~~~P~~~~--~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~ 146 (476)
T COG5184 69 SVYSWGSNGMNELGLGNDETKVDRPQLNP--FGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICD 146 (476)
T ss_pred eeEEEecCcceeeccCCchhcccCceecC--cccccceeeEEeecCCceEEeecCCCCEEEeccCccccccccccccccc
Q ss_pred ---------EEECCCCCceEEEcc------c-CCCCCCCccceEEEEEeCCEEEEEec-cCCCCCCcccEEEEecCCCCe
Q 001895 258 ---------ALDTAAKPYEWRKLE------P-EGEGPPPCMYATASARSDGLLLLCGG-RDASSVPLASAYGLAKHRDGR 320 (999)
Q Consensus 258 ---------~yDl~s~~~~W~~v~------~-~~~~P~~r~~~~a~~~~~~~LyvfGG-~~~~~~~~~d~~~~~~~~~~~ 320 (999)
.+++... .|.... + .-..-......+++...++.+|.+|. +..+...-...-.....-.-+
T Consensus 147 ~~~~~~~~~~~~~~~t--P~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~ 224 (476)
T COG5184 147 QNNDIIDFDDYELEST--PFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFT 224 (476)
T ss_pred ccccccccchhhcccC--CceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeee
Q ss_pred EEEEE--CCCCCCCCcceeEEEEECCEEEEEcCcC--CCCCCcccCCeEEEEECCCCeEEEcccCcCCCCCCCcccccCC
Q 001895 321 WEWAI--APGVSPSPRYQHAAVFVNARLHVSGGAL--GGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAG 396 (999)
Q Consensus 321 W~w~~--~~g~~P~~R~~hsav~~~~~L~V~GG~~--~~~~~~~~~~~v~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~ 396 (999)
|.|.. ..-..-..-..-.++.-++++|-.|--. .-+.......+++.+.+....=..+...
T Consensus 225 p~~v~~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~v--------------- 289 (476)
T COG5184 225 PLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYV--------------- 289 (476)
T ss_pred eeecCchheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhc---------------
Q ss_pred CCCccCCCCcceeEEEEE-CCEEEEEcC
Q 001895 397 GDAAVELTRRCRHAAAAV-GDLIFIYGG 423 (999)
Q Consensus 397 ~~~~~~p~~R~~hsa~~~-~~~LyV~GG 423 (999)
..-..|++++- ++.||.+|.
T Consensus 290 -------acG~~h~~al~~~G~i~a~G~ 310 (476)
T COG5184 290 -------ACGKDHSLALDEDGEIYAWGV 310 (476)
T ss_pred -------ccCcceEEEEcCCCeEEEecc
No 269
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=26.34 E-value=44 Score=41.01 Aligned_cols=71 Identities=24% Similarity=0.172 Sum_probs=35.3
Q ss_pred CCeEEEecCCCCHHH-------H---HHHHHHhCCCCCCCCccceeEEEeccccCCCCCh-----HHHHHHHHHhhhcCC
Q 001895 698 APIKIFGDLHGQFGD-------L---MRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETITLLLALKVEYP 762 (999)
Q Consensus 698 ~~i~vvGDiHG~~~~-------L---~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~P 762 (999)
-.|+-+.|+||++.. + ..+++........ .....-+|.-||++.--+.+ .-++.+|-++..
T Consensus 35 ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~-~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g~--- 110 (551)
T PRK09558 35 ITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAA-EGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGY--- 110 (551)
T ss_pred EEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhc-cCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCCC---
Confidence 347889999999752 2 3334333210000 00112466689998632211 122344444322
Q ss_pred CCEEEecCCccc
Q 001895 763 NNVHLIRGNHEA 774 (999)
Q Consensus 763 ~~v~llrGNHE~ 774 (999)
.+.. .||||.
T Consensus 111 -Da~t-lGNHEF 120 (551)
T PRK09558 111 -DAMA-VGNHEF 120 (551)
T ss_pred -CEEc-cccccc
Confidence 3444 499997
No 270
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=25.75 E-value=62 Score=30.35 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=51.8
Q ss_pred CCCCceeeCHHHHHHHHHHcCCcEEEEeccccccceEEe------cCCeEEEEeccc---ccCCCCCCeEEEEEEcCCc
Q 001895 875 RGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERF------AQGHLITLFSAT---NYCGTANNAGAILVLGRDL 944 (999)
Q Consensus 875 rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~------~~~~~iTvFSa~---~y~~~~~n~ga~l~~~~~~ 944 (999)
|.+|.+.+|.+.+.+-+++...+++|.+-++-+++-+-+ ++-.+++.|+.- .-||. .+.+++.+.+..+
T Consensus 13 ~rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk-~~~~~iai~d~g~ 90 (104)
T PRK05583 13 KKAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGR-DEIKILGVKDKNM 90 (104)
T ss_pred HHhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCC-CCeEEEEEeChHH
Confidence 345657899999999999999999999999998876532 345677777652 45665 3477777777654
No 271
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=25.01 E-value=73 Score=34.80 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccccccceEEecCCeEEEEecccc
Q 001895 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATN 926 (999)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvFSa~~ 926 (999)
...-+.+||+.+|..+ -+|.+.+||.|+.++-+|+||---.
T Consensus 139 ~~~~~~~fl~~lGy~~---~~Eyv~~G~~F~~g~i~I~l~ri~~ 179 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRF---DYEYVVEGYRFFKGDIVIELFRIFK 179 (250)
T ss_dssp SSSSHHHHHHHTTEEE---EEEEEEEEEEEEECCEEEEEEEEEE
T ss_pred CCCCHHHHHHHcCCce---EEEEEEEEEEEEECCEEEEEEEEEe
Confidence 4556889999999765 4899999999999998888885433
No 272
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=24.48 E-value=81 Score=36.77 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCcEEEEeccccc
Q 001895 886 RVMEFCNNNDLQLIVRAHECVM 907 (999)
Q Consensus 886 ~~~~fl~~~~l~~iiR~H~~~~ 907 (999)
.+.-+|+++++++.|-||+=..
T Consensus 239 ~L~PLL~ky~VdlYisGHDH~l 260 (394)
T PTZ00422 239 YLLPLLKDAQVDLYISGYDRNM 260 (394)
T ss_pred HHHHHHHHcCcCEEEEccccce
Confidence 6788999999999999998653
No 273
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=23.79 E-value=83 Score=34.75 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=26.9
Q ss_pred eEEEeccccCCCCChHHHH-HHHHHhhhcCCCCEEEecCCcccc
Q 001895 733 DYLFLGDYVDRGQHSLETI-TLLLALKVEYPNNVHLIRGNHEAA 775 (999)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl-~ll~~lk~~~P~~v~llrGNHE~~ 775 (999)
++||+||+|. .-..+.| .+|-.||.+++..+ +-.|=|..
T Consensus 2 ~ilfiGDi~G--~~Gr~~l~~~L~~lk~~~~~D~--vIaNgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVYG--KAGRKIVKNNLPQLKSKYQADL--VIANGENT 41 (266)
T ss_pred eEEEEEecCC--HHHHHHHHHHHHHHHHhCCCCE--EEEcCccc
Confidence 7999999994 4444444 67778888876554 44566665
No 274
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.14 E-value=1e+03 Score=26.09 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=32.0
Q ss_pred CeEEEEECCCCCCCCcceeEEEEECCEEEEEcCcCCCCCCcccCCeEEEEECCC-CeEEEcccC
Q 001895 319 GRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAA-GVWCDTKSV 381 (999)
Q Consensus 319 ~~W~w~~~~g~~P~~R~~hsav~~~~~L~V~GG~~~~~~~~~~~~~v~vyD~~t-~~W~~v~~~ 381 (999)
+.|+-...... |.+.+.-+-...++.|-|.||- |.+.++-... ++|.++...
T Consensus 245 e~wk~tll~~f-~~~~w~vSWS~sGn~LaVs~Gd----------Nkvtlwke~~~Gkw~~v~~~ 297 (299)
T KOG1332|consen 245 EPWKKTLLEEF-PDVVWRVSWSLSGNILAVSGGD----------NKVTLWKENVDGKWEEVGEV 297 (299)
T ss_pred CcccccccccC-CcceEEEEEeccccEEEEecCC----------cEEEEEEeCCCCcEEEcccc
Confidence 35554444443 5666666666667778787773 4455555544 489988653
No 275
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=22.59 E-value=2.9e+02 Score=24.63 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=48.0
Q ss_pred ecCCeEEEecCCCCHHHHHHHHHHhCCC-CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCCEEEecCCc
Q 001895 696 LKAPIKIFGDLHGQFGDLMRLFDEYGSP-STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 772 (999)
Q Consensus 696 ~~~~i~vvGDiHG~~~~L~~il~~~g~~-~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~P~~v~llrGNH 772 (999)
....+.||=|---+.+.+..+++.+... +.. ..++.+|+.-|+|....+....+-.+...+...+++.-.|+
T Consensus 10 ~~~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~-----~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 82 (91)
T PF02875_consen 10 EPNGPTVIDDYAHNPDSIRALLEALKELYPKG-----RIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDNP 82 (91)
T ss_dssp EETTEEEEEET--SHHHHHHHHHHHHHHCTTS-----EEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSBT
T ss_pred eCCCcEEEEECCCCHHHHHHHHHHHHHhccCC-----cEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 3345778888777888888888776321 111 16788999999999888877777777777666666655544
No 276
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.50 E-value=1.1e+03 Score=26.15 Aligned_cols=95 Identities=22% Similarity=0.310 Sum_probs=58.2
Q ss_pred eEEEEECCCC--cEEEecCCCCCCCCCcCcEEEEeCCEEEEEcccCCCCCCcCcEEEEecCCCCCceEEEeecCCCCCCC
Q 001895 151 DVHCYDVLTN--KWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (999)
Q Consensus 151 dv~~yD~~t~--~W~~l~~~g~~P~pR~~hsa~~~g~~iyv~GG~~~~~~~~~dv~vyD~~t~t~kW~~v~~~g~~P~~R 228 (999)
.+-..|+.++ .|+.+- ..|...++.++|+. +|.|-++ ..+|.++.++...-|...... .-.
T Consensus 34 ~~~avd~~sG~~~We~il------g~RiE~sa~vvgdf-VV~GCy~------g~lYfl~~~tGs~~w~f~~~~----~vk 96 (354)
T KOG4649|consen 34 IVIAVDPQSGNLIWEAIL------GVRIECSAIVVGDF-VVLGCYS------GGLYFLCVKTGSQIWNFVILE----TVK 96 (354)
T ss_pred eEEEecCCCCcEEeehhh------CceeeeeeEEECCE-EEEEEcc------CcEEEEEecchhheeeeeehh----hhc
Confidence 4566777766 488774 34888899999988 5556542 468999999875567766411 111
Q ss_pred cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCCceEE
Q 001895 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWR 269 (999)
Q Consensus 229 ~~h~~~v~~~~~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~ 269 (999)
.. +.+...+ .++.+|-.|+ .++.+|+.+..--|.
T Consensus 97 ~~-a~~d~~~-glIycgshd~-----~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 97 VR-AQCDFDG-GLIYCGSHDG-----NFYALDPKTYGCVYK 130 (354)
T ss_pred cc-eEEcCCC-ceEEEecCCC-----cEEEecccccceEEe
Confidence 11 2223344 3555666555 467777766533455
No 277
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=22.37 E-value=6.5e+02 Score=30.65 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=35.6
Q ss_pred CCCCcccEEEEECCc-EEEEEccCCCCCCCCeEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCC
Q 001895 225 PGPRYGHVMALVGQR-YLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (999)
Q Consensus 225 P~~R~~h~~~v~~~~-~Lyv~GG~~g~~~~ndv~~yDl~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~LyvfGG~~~ 302 (999)
-.|+++.-+++..-+ -||+.|- -++||+||++.. +|-..-.... +...+..+. .-.-|+++||.++
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqG--rfL~P~~~~~---~~lN~v~in-~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQG--RFLNPFETDS---GELNVVSIN-EEHGLLACGTEDG 197 (703)
T ss_pred ecCcCCccccccCCCccEEEeec------CcceEEEEcccc--cccccccccc---ccceeeeec-CccceEEecccCc
Confidence 456666666665332 3665542 258999999998 7754311111 011121111 1246888888654
No 278
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=21.37 E-value=5.5e+02 Score=26.51 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=60.0
Q ss_pred ccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHhCCCCC----------------------
Q 001895 668 QFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPST---------------------- 725 (999)
Q Consensus 668 ~~~l~~~~i~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~---------------------- 725 (999)
...+++++|.+-|.+..+.+.++-.= ...++||=++|.+-=+-.++..+.++..
T Consensus 9 evLisee~I~~ri~ela~~I~~~y~g----~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~ 84 (178)
T COG0634 9 EVLISEEQIKARIKELAAQITEDYGG----KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKIL 84 (178)
T ss_pred eEeeCHHHHHHHHHHHHHHHHHhhCC----CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEe
Confidence 45789999988888877777665322 5688999999999877777777765432
Q ss_pred ---CCCccceeEEEeccccCCCCChHHHHHHHHH
Q 001895 726 ---AGDIAYIDYLFLGDYVDRGQHSLETITLLLA 756 (999)
Q Consensus 726 ---~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~ 756 (999)
+.++..-++|.+=|++|-|.-=-++..+|..
T Consensus 85 kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~ 118 (178)
T COG0634 85 KDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKE 118 (178)
T ss_pred cccccCCCCCeEEEEecccccChhHHHHHHHHHh
Confidence 1122233789999999999765555555543
No 279
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=20.29 E-value=1.2e+03 Score=28.06 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=39.4
Q ss_pred eCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEE-CCEEEEEcCcCCCCCCcccCCeEEEE
Q 001895 290 SDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFV-NARLHVSGGALGGGRMVEDSSSVAVL 368 (999)
Q Consensus 290 ~~~~LyvfGG~~~~~~~~~d~~~~~~~~~~~W~w~~~~g~~P~~R~~hsav~~-~~~L~V~GG~~~~~~~~~~~~~v~vy 368 (999)
.+|..++--|.++. ..+|.+.....--..|.-.+ .+--..-+++. +.+|++.|-....+. ....+++|
T Consensus 374 ~dg~~LlSRg~D~t----LKvWDLrq~kkpL~~~tgL~----t~~~~tdc~FSPd~kli~TGtS~~~~~---~~g~L~f~ 442 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDT----LKVWDLRQFKKPLNVRTGLP----TPFPGTDCCFSPDDKLILTGTSAPNGM---TAGTLFFF 442 (641)
T ss_pred cccchhhhccCCCc----eeeeeccccccchhhhcCCC----ccCCCCccccCCCceEEEecccccCCC---CCceEEEE
Confidence 46666666565543 34666654433112333332 33223334443 678888876544332 24569999
Q ss_pred ECCCCe
Q 001895 369 DTAAGV 374 (999)
Q Consensus 369 D~~t~~ 374 (999)
|..|..
T Consensus 443 d~~t~d 448 (641)
T KOG0772|consen 443 DRMTLD 448 (641)
T ss_pred ecccee
Confidence 987765
Done!