BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001896
(998 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust.
Identities = 291/784 (37%), Positives = 439/784 (55%), Gaps = 74/784 (9%)
Query: 206 LQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSN 265
++VTG+ C + +E + + +GV + R + + + FD + + ++ I
Sbjct: 6 VRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65
Query: 266 GKFQIRVMNPFARMTSRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRC 325
G V++ A +++ + E S M R + F + + F+ I L Y
Sbjct: 66 G-----VVDEQAAVSA-EVEHLSRMKRKLYVAAFAGVLLLFL---AHFISLPYE------ 110
Query: 326 GPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALL 385
D++ + F G + AA ALR + NMDV+ ++G AA+ SV +
Sbjct: 111 ------DFVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASVLST- 163
Query: 386 YGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKD-- 443
GV+ +S ++ETS +L+ F+L G+ LE AK +T +AIKKLV L TA+ V++D
Sbjct: 164 AGVLPREYS--FYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAV-VIRDGK 220
Query: 444 KVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEIN 503
++ +EE + GD + V PG K+P DG+VV G SYV+ESM++GE VPVLK
Sbjct: 221 EIAVPVEE-------VAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKG 273
Query: 504 SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVV 563
V G TIN GVL I+AT+VG + +L+QI+ LVE A SK PIQ+ AD V + F+P V+
Sbjct: 274 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 333
Query: 564 TLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMV 623
+A+ ++ WY + P +FA I+V+V+ACPCA GLATPTA+ V
Sbjct: 334 LVAISAFIYWY---FIAHAP----------LLFAFTTLIAVLVVACPCAFGLATPTALTV 380
Query: 624 ATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLV 683
G GA G+LIK DALE A+K+ VIFDKTGTLT+G+ VT V D E L L
Sbjct: 381 GMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDL-VPLNGDERELLRLA 439
Query: 684 ASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRG 743
A AE SEHP+A+A+V+ A H E L + + G G
Sbjct: 440 AIAERRSEHPIAEAIVKKALE---------------HGIE------LGEPEKVEVIAGEG 478
Query: 744 IQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIAD 803
+ +LVGN++L+ + G+ + + VE + +LE A+T ++VA + + G++ ++D
Sbjct: 479 VVA----DGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSD 534
Query: 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQ 863
+K A V+ L +MG++ M+TGDNWR+A A++RE+ + V+A+V+P K++ V+ Q
Sbjct: 535 TLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQ 594
Query: 864 KDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRK 923
+VA VGDGIND+PALA AD+G+A+G+G+D+A+E+ D VL+R+ L DV+ AI LSRK
Sbjct: 595 AK-EVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRK 653
Query: 924 TFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMAXXXXXXXXXXXXXRR 983
T ++I+ N +A+ YNVI IP AAG+ +P G+ P AG MA R
Sbjct: 654 TMSKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLRN 713
Query: 984 YKKP 987
Y P
Sbjct: 714 YVPP 717
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGF 109
V VTGMTCA C S+E A+ L+GV + V L A + FD + E IK IED G+
Sbjct: 6 VRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGF-- 191
+ GMTCA CV S+E + L GV+ V LAT + +D I + I IED G+
Sbjct: 8 VTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGV 67
Query: 192 ---------EASFVQSSGQDKILLQVTGVLCELDAHFL 220
E + + + GVL AHF+
Sbjct: 68 VDEQAAVSAEVEHLSRMKRKLYVAAFAGVLLLFLAHFI 105
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 442 bits (1137), Expect = e-124, Method: Compositional matrix adjust.
Identities = 267/646 (41%), Positives = 386/646 (59%), Gaps = 53/646 (8%)
Query: 344 FVIGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAM 403
F G + AA ALR + NMDV+ ++G AA+ SV + GV+ +S ++ETS +
Sbjct: 45 FYSGSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASVLST-AGVLPREYS--FYETSVL 101
Query: 404 LITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKD--KVGKCIEEREIDALLIQS 461
L+ F+L G+ LE AK +T +AIKKLV L TA+ V++D ++ +EE +
Sbjct: 102 LLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAV-VIRDGKEIAVPVEE-------VAV 153
Query: 462 GDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQA 521
GD + V PG K+P DG+VV G SYV+ESM++GE VPVLK V G TIN GVL I+A
Sbjct: 154 GDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRA 213
Query: 522 TKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGA 581
T+VG + +L+QI+ LVE A SK PIQ+ AD V + F+P V+ +A+ ++ WY +
Sbjct: 214 TRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWY---FIAH 270
Query: 582 YPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDAL 641
P +FA I+V+V+ACPCA GLATPTA+ V G GA G+LIK DAL
Sbjct: 271 AP----------LLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADAL 320
Query: 642 ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEY 701
E A+K+ VIFDKTGTLT+G+ VT V D E L L A AE SEHP+A+A+V+
Sbjct: 321 EVAEKVTAVIFDKTGTLTKGKPEVTDL-VPLNGDERELLRLAAIAERRSEHPIAEAIVKK 379
Query: 702 ARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLL 761
A H E L + + G G+ +LVGN++L+
Sbjct: 380 ALE---------------HGIE------LGEPEKVEVIAGEGVVA----DGILVGNKRLM 414
Query: 762 NESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGV 821
+ G+ + + VE + +LE A+T ++VA + + G++ ++D +K A V+ L +MG+
Sbjct: 415 EDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGI 474
Query: 822 RPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPA 881
+ M+TGDNWR+A A++RE+ + V+A+V+P K++ V+ Q +VA VGDGIND+PA
Sbjct: 475 KVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPA 533
Query: 882 LAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVI 941
LA AD+G+A+G+G+D+A+E+ D VL+R+ L DV+ AI LSRKT ++I+ N +A+ YNVI
Sbjct: 534 LAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVI 593
Query: 942 AIPIAAGVFFPSLGIKLPPWAAGACMAXXXXXXXXXXXXXRRYKKP 987
IP AAG+ +P G+ P AG MA R Y P
Sbjct: 594 LIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLRNYVPP 639
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 263/697 (37%), Positives = 383/697 (54%), Gaps = 65/697 (9%)
Query: 284 SEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGD---WLNWALVS 340
S E +M R F +L L+IPV + + + F+ G+ W+ L +
Sbjct: 75 SPEYLDMRRRFWIALMLTIPVVILEMGGHGLK-----------HFISGNGSSWIQLLLAT 123
Query: 341 VVQFVIGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVV--TGFWSP--- 395
V G F+ ++L+ G NM L+A+G A+ YS+ A+L+ V F S
Sbjct: 124 PVVLWGGWPFFKRGWQSLKTGQLNMFTLIAMGIGVAWIYSMVAVLWPGVFPHAFRSQEGV 183
Query: 396 --TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEERE 453
YFE +A++ T VL G+ LE+ A+ +T AI+ L++L P +A + +D E E
Sbjct: 184 VAVYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDG-----SEEE 238
Query: 454 IDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINL 513
+ + GD L+V PG K+P DG V G S+V+ESMVTGE +PV KE ++ VIG TIN
Sbjct: 239 VSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEASAKVIGATINQ 298
Query: 514 HGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCW 573
G ++A VGSD +L++I+ +V AQ S+APIQ+ AD V+ FVP V+ +A+ +++ W
Sbjct: 299 TGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVW 358
Query: 574 YVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGV 633
+LG P + L+ ++SV++IACPCALGLATP ++MV G GA +GV
Sbjct: 359 ---ALLGPQPA---------LSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGV 406
Query: 634 LIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHP 693
LIK +ALER +K+ ++ DKTGTLT+G +T V L L A+ E SEHP
Sbjct: 407 LIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRI-VTDDFVEDNALALAAALEHQSEHP 465
Query: 694 LAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQV 753
LA A+V A+ S GS V F A G+G+ + G V
Sbjct: 466 LANAIVHAAKEKGL----------------SLGS-----VEAFEAPTGKGVVGQVDGHHV 504
Query: 754 LVGNRKLLNESGITIPDHVESF--VVELEESARTGILVAYDDNLIGVMGIADPVKREAAV 811
+GN +L+ E G D+ F EL + + +A D + ++ + DP+K
Sbjct: 505 AIGNARLMQEHG---GDNAPLFEKADELRGKGASVMFMAVDGKTVALLVVEDPIKSSTPE 561
Query: 812 VVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAM 871
+ L + G+ VM+TGD+ RTA AVA +GI+ V+A++MP K+ V + G IVAM
Sbjct: 562 TILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIMPEDKSRIVSELKDKGLIVAM 621
Query: 872 VGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLN 931
GDG+ND+PALA AD+G+A+G GTD+AIE+A L+ L + A LS T + IR N
Sbjct: 622 AGDGVNDAPALAKADIGIAMGTGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQN 681
Query: 932 YIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMA 968
FA YNV+ +P+AAGV +P G+ L P A A MA
Sbjct: 682 LFFAFIYNVLGVPLAAGVLYPLTGLLLSPMIAAAAMA 718
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 186/303 (61%), Gaps = 29/303 (9%)
Query: 628 GANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAE 687
GA G+LIK DALE A+K+ VIFDKTGTLT+G+ VT V D E L L A AE
Sbjct: 13 GAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDL-VPLNGDERELLRLAAIAE 71
Query: 688 ASSEHPLAKAVVEYA-RHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQC 746
SEHP+A+A+V+ A H +P + G G+
Sbjct: 72 RRSEHPIAEAIVKKALEHGIELGEPE----------------------KVEVIAGEGVVA 109
Query: 747 FISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVK 806
+LVGN++L+ + G+ + + VE + +LE A+T ++VA + + G++ ++D +K
Sbjct: 110 ----DGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLK 165
Query: 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 866
A V+ L +MG++ M+TGDNWR+A A++RE+ + V+A+V+P K++ V+ Q
Sbjct: 166 ESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK- 224
Query: 867 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFA 926
+VA VGDGIND+PALA AD+G+A+G+G+D+A+E+ D VL+R+ L DV+ AI LSRKT +
Sbjct: 225 EVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMS 284
Query: 927 RIR 929
+I+
Sbjct: 285 KIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/303 (39%), Positives = 185/303 (61%), Gaps = 29/303 (9%)
Query: 628 GANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAE 687
GA G+LIK DALE A+K+ VIFDKTGTLT+G+ VT V D E L L A AE
Sbjct: 13 GAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDL-VPLNGDERELLRLAAIAE 71
Query: 688 ASSEHPLAKAVVEYA-RHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQC 746
SE P+A+A+V+ A H +P + G G+
Sbjct: 72 RRSEQPIAEAIVKKALEHGIELGEPE----------------------KVEVIAGEGVVA 109
Query: 747 FISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVK 806
+LVGN++L+ + G+ + + VE + +LE A+T ++VA + + G++ ++D +K
Sbjct: 110 ----DGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLK 165
Query: 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 866
A V+ L +MG++ M+TGDNWR+A A++RE+ + V+A+V+P K++ V+ Q
Sbjct: 166 ESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK- 224
Query: 867 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFA 926
+VA VGDGIND+PALA AD+G+A+G+G+D+A+E+ D VL+R+ L DV+ AI LSRKT +
Sbjct: 225 EVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMS 284
Query: 927 RIR 929
+I+
Sbjct: 285 KIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 199 bits (505), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 175/293 (59%), Gaps = 29/293 (9%)
Query: 636 KGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLA 695
K DALE A+K+ VIFDKTGTLT+G+ VT V D E L L A AE SEHP+A
Sbjct: 1 KNADALEVAEKVTAVIFDKTGTLTKGKPEVTDL-VPLNGDERELLRLAAIAERRSEHPIA 59
Query: 696 KAVVEYA-RHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVL 754
+A+V+ A H +P + G G+ +L
Sbjct: 60 EAIVKKALEHGIELGEPE----------------------KVEVIAGEGVVA----DGIL 93
Query: 755 VGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVE 814
VGN++L + G+ + + VE + +LE A+T ++VA + + G++ ++D +K A V+
Sbjct: 94 VGNKRLXEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQ 153
Query: 815 GLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGD 874
L + G++ +TGDNWR+A A++RE+ + V+A+V+P K++ V+ Q +VA VGD
Sbjct: 154 ELKRXGIKVGXITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGD 212
Query: 875 GINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFAR 927
GIND+PALA AD+G+A+G+G+D+A+E+ D VL+R+ L DV+ AI LSRKT ++
Sbjct: 213 GINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTXSK 265
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 199 bits (505), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 177/289 (61%), Gaps = 27/289 (9%)
Query: 640 ALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVV 699
A ERA+ ++ VIFDKTGTLT+GR VT F + E L + AS EA SEHP+A A+V
Sbjct: 6 AFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNHSE-DELLQIAASLEARSEHPIAAAIV 64
Query: 700 EYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRK 759
E A E G G L +V +F A+PG+G++ ++G++ +V +
Sbjct: 65 EEA--------------------EKRGFG-LTEVEEFRAIPGKGVEGIVNGRRYMVVSPG 103
Query: 760 LLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKM 819
+ E GI + VE +L++ +T + + + + GV+ +AD ++ E+ + L +
Sbjct: 104 YIRELGIKTDESVE----KLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAI 159
Query: 820 GVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDS 879
G++ +M+TGDN A VA E+G+ D A+V+P KA+ V+ Q+ + AMVGDG+ND+
Sbjct: 160 GIKCMMLTGDNRFVAKWVAEELGLDDYFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDA 218
Query: 880 PALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARI 928
PALA ADVG+AIGAGTD+A+E AD VL+RN DV ++LSRKT++++
Sbjct: 219 PALAQADVGIAIGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKL 267
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 176/288 (61%), Gaps = 27/288 (9%)
Query: 640 ALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVV 699
A ERA+ ++ VIFDKTGTLT+GR VT F + E L + AS EA SEHP+A A+V
Sbjct: 6 AFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNHSE-DELLQIAASLEARSEHPIAAAIV 64
Query: 700 EYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRK 759
E A E G G L +V +F A+PG+G++ ++G++ +V +
Sbjct: 65 EEA--------------------EKRGFG-LTEVEEFRAIPGKGVEGIVNGRRYMVVSPG 103
Query: 760 LLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKM 819
+ E GI + VE +L++ +T + + + + GV+ +AD ++ E+ + L +
Sbjct: 104 YIRELGIKTDESVE----KLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAI 159
Query: 820 GVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDS 879
G++ +M+TGDN A VA E+G+ D A+V+P KA+ V+ Q+ + AMVGDG+ND+
Sbjct: 160 GIKCMMLTGDNRFVAKWVAEELGLDDYFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDA 218
Query: 880 PALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFAR 927
PALA ADVG+AIGAGTD+A+E AD VL+RN DV ++LSRKT+++
Sbjct: 219 PALAQADVGIAIGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSK 266
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 142/587 (24%), Positives = 243/587 (41%), Gaps = 104/587 (17%)
Query: 413 YLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTK 472
+++ G D +KK + L +V++D K EI+A + GD L+V GT
Sbjct: 159 FVQEFQAGSIVDELKKTLALKA----VVLRDGTLK-----EIEAPEVVPGDILQVEEGTI 209
Query: 473 LPADGIVVWGTSY--VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVL 530
+PADG +V ++ V++S +TGE++ V K V + G + T G + +
Sbjct: 210 IPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEAFVVITATGDNTFV 269
Query: 531 SQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPEN 590
+ +LV A + + + +I + +V+ FT L +V+ + P
Sbjct: 270 GRAAALVNAASGGSGHFTEVLNGIGTILLILVI----FTLLIVWVSSFYRSNP------- 318
Query: 591 GTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYV 650
V L F++++ +I P L T + V A +++ A+E ++ +
Sbjct: 319 ---IVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEIL 375
Query: 651 IFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSE-----------------HP 693
DKTGTLT+ + ++ +D E L L A AS + +P
Sbjct: 376 CSDKTGTLTKNKLSLHDPYTVAGVDP-EDLMLTACLAASRKKKGIDAIDKAFLKSLKYYP 434
Query: 694 LAKAVVEYAR--HFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGK 751
AK+V+ + FH FD S S + G I C + G
Sbjct: 435 RAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQ-----------------GERITC-VKGA 476
Query: 752 QVLVGNRKLLNESGITIPDHV-ESFVVELEESARTGIL---VAYDD-----NLIGVMGIA 802
+ V K + E IP+ V +++ ++ E A G VA ++G+M
Sbjct: 477 PLFV--LKTVEEDH-PIPEEVDQAYKNKVAEFATRGFRSLGVARKRGEGSWEILGIMPCM 533
Query: 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI------------------- 843
DP + + V +G+ M+TGD A +R++G+
Sbjct: 534 DPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMP 593
Query: 844 ----------QDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGA 893
D A+V P K + V Q+ G +VAM GDG+ND+P+L AD G+A+
Sbjct: 594 GSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEG 653
Query: 894 GTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 940
+D A AAD V + L +I A+ SR+ F R+ ++ +A ++
Sbjct: 654 SSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSI 700
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%)
Query: 423 SDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482
S+A+ KL+ L A +V D + E ++D L+Q GD +KV+PG K P DG V+ G
Sbjct: 6 SEALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEG 65
Query: 483 TSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ 541
S V+ES++TGEA+PV K+ S VI G+IN +G L I AT VG+D LSQI+ LVE AQ
Sbjct: 66 HSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLICATHVGADTTLSQIVKLVEEAQ 124
>pdb|2EW9|A Chain A, Solution Structure Of Apowln5-6
Length = 149
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 88/146 (60%), Gaps = 6/146 (4%)
Query: 52 VTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111
+ GMTCA+C +++E L GV VAL+ KA++ +DP++++ +I I+D GFEA
Sbjct: 10 IKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEA 69
Query: 112 EILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVE 171
++ + + S G I + TI GMTCA+CV+++E L G+ A VALATS V+
Sbjct: 70 AVMEDYAGS----DGNI--ELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVK 123
Query: 172 YDPTVISKDDIANAIEDAGFEASFVQ 197
+DP +I DI IE+ GF AS Q
Sbjct: 124 FDPEIIGPRDIIKIIEEIGFHASLAQ 149
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193
I GMTCA+CV+++E L+ GV +VAL E++YDP VI +IA I+D GFEA
Sbjct: 10 IKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEA 69
Query: 194 SFVQS-SGQD-KILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEAL 251
+ ++ +G D I L +TG+ C H +E L+ G+ + + V FDPE +
Sbjct: 70 AVMEDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEII 129
Query: 252 SSRSLV 257
R ++
Sbjct: 130 GPRDII 135
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIED 106
I++ +TGMTCA+C +++E L G+ ASVAL +KA V FDP+++ DI IE+
Sbjct: 81 NIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEE 140
Query: 107 AGFEAEI 113
GF A +
Sbjct: 141 IGFHASL 147
>pdb|3DXS|X Chain X, Crystal Structure Of A Copper Binding Domain From Hma7, A
P- Type Atpase
Length = 74
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 66/72 (91%)
Query: 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAI 104
MR+IQVGVTGMTCAACSNSVE ALM + GV KASVALLQN+ADVVFDP+LVK+EDIK I
Sbjct: 1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEI 60
Query: 105 EDAGFEAEILAE 116
EDAGFEAEILAE
Sbjct: 61 EDAGFEAEILAE 72
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAG 190
Q + GMTCAAC NSVE L + GV +A VAL + +V +DP ++ ++DI IEDAG
Sbjct: 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAG 64
Query: 191 FEASFV 196
FEA +
Sbjct: 65 FEAEIL 70
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 100 bits (248), Expect = 6e-21, Method: Composition-based stats.
Identities = 81/285 (28%), Positives = 139/285 (48%), Gaps = 55/285 (19%)
Query: 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLV--ASAE 687
+ G++IK + E+ ++I +IFDKTGTLT G VT G+ L+L AS E
Sbjct: 11 HKGMIIKNSNVYEKIKEIDTIIFDKTGTLTYGTPIVTQFI-------GDSLSLAYAASVE 63
Query: 688 ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCF 747
A S HP+AKA+V+YA+ G +L+V DF + G G++
Sbjct: 64 ALSSHPIAKAIVKYAKE-----------QGVK----------ILEVKDFKEISGIGVRGK 102
Query: 748 ISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY-DDNLIGVMGIADPVK 806
IS K ++E++++ + Y + I I+D +
Sbjct: 103 ISDK------------------------IIEVKKAENNNDIAVYINGEPIASFNISDVPR 138
Query: 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 866
+E L G++ ++++GD +++E+ IQ+ +++ P K + +++G
Sbjct: 139 PNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNG 198
Query: 867 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSL 911
+ V M+GDG+ND+ ALA ADV +A+G G DI+ AD +L+ N +
Sbjct: 199 NKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSNDI 243
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 55/285 (19%)
Query: 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLV--ASAE 687
+ G++IK + E+ ++I +IF+KTGTLT G VT G+ L+L AS E
Sbjct: 11 HKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI-------GDSLSLAYAASVE 63
Query: 688 ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCF 747
A S HP+AKA+V+YA+ G +L+V DF + G G++
Sbjct: 64 ALSSHPIAKAIVKYAKE-----------QGVK----------ILEVKDFKEISGIGVRGK 102
Query: 748 ISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY-DDNLIGVMGIADPVK 806
IS K ++E++++ + Y + I I+D +
Sbjct: 103 ISDK------------------------IIEVKKAENNNDIAVYINGEPIASFNISDVPR 138
Query: 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 866
+E L G++ ++++GD +++E+ IQ+ +++ P K + +++G
Sbjct: 139 PNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNG 198
Query: 867 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSL 911
+ V M+GDG+ND+ ALA ADV +A+G G DI+ AD +L+ N +
Sbjct: 199 NKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSNDI 243
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 55/285 (19%)
Query: 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLV--ASAE 687
+ G++IK + E+ ++I +IF+KTGTLT G VT G+ L+L AS E
Sbjct: 11 HKGMIIKNSNVYEKIKEIDTIIFNKTGTLTYGTPIVTQFI-------GDSLSLAYAASVE 63
Query: 688 ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCF 747
A S HP+AKA+V+YA+ G +L+V DF + G G++
Sbjct: 64 ALSSHPIAKAIVKYAKE-----------QGVK----------ILEVKDFKEISGIGVRGK 102
Query: 748 ISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY-DDNLIGVMGIADPVK 806
IS K ++E++++ + Y + I I+D +
Sbjct: 103 ISDK------------------------IIEVKKAENNNDIAVYINGEPIASFNISDVPR 138
Query: 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 866
+E L G++ ++++GD +++E+ IQ+ +++ P K + +++G
Sbjct: 139 PNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNG 198
Query: 867 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSL 911
+ V M+GDG+ND+ ALA ADV +A+G G DI+ AD +L+ N +
Sbjct: 199 NKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSNDI 243
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 128/553 (23%), Positives = 223/553 (40%), Gaps = 83/553 (15%)
Query: 442 KDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLK 500
K KV + + E +A ++ GD + + G +PAD ++ G V++S +TGE++PV K
Sbjct: 131 KTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK 190
Query: 501 EINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVP 560
V G+ G + G + LV++ + F + +I
Sbjct: 191 HPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ----VGHFQKVLTAIGNF 246
Query: 561 IVVTLALFTWLCWYVAGVLGAYPEQWLP-ENGTHFVFALMFSISVVVIACPCALGLATPT 619
+ ++A+ V ++ YP Q +G + L+ + +A PT
Sbjct: 247 CICSIAIGM-----VIEIIVMYPIQRRKYRDGIDNLLVLLIG----------GIPIAMPT 291
Query: 620 AVMVATGVGAN----NGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATV--TTAKVFTK 673
+ V +G++ G + K A+E + + DKTGTLT + +V +VF K
Sbjct: 292 VLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCK 351
Query: 674 MDRGEFLTLVASAEASSEHPLA------------KAVVEYARHFHFFDDPSLNP-DGQSH 720
+ + L A+ + E+ A K R HF NP D ++
Sbjct: 352 GVEKDQVLLFAAMASRVENQDAIDAAMVGMLADPKEARAGIREVHFL---PFNPVDKRTA 408
Query: 721 SKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELE 780
GSG VS P + ++ + + ++K+L+ + S V +
Sbjct: 409 LTYIDGSGNWHRVS--KGAPEQILELAKASNDL---SKKVLSIIDKYAERGLRSLAVARQ 463
Query: 781 ---ESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAV 837
E + ++ +G++ + DP + ++A + L +GV M+TGD
Sbjct: 464 VVPEKTKESPGAPWE--FVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKET 521
Query: 838 AREIGI------------------------------QDVMADVMPAGKADAVRSFQKDGS 867
R +G+ D A V P K + V+ Q+
Sbjct: 522 GRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKH 581
Query: 868 IVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFAR 927
IV M GDG+ND+PAL AD+G+A+ TD A A+D VL L +I A+ SR F R
Sbjct: 582 IVGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQR 641
Query: 928 IRLNYIFAMAYNV 940
++ I+A++ +
Sbjct: 642 MKNYTIYAVSITI 654
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 76/114 (66%), Gaps = 9/114 (7%)
Query: 805 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQK 864
+K A V+ L + G++ +TGDNWR+A A++RE+ + V+A+V+P K++ V+ Q
Sbjct: 23 LKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQA 82
Query: 865 DGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAI 918
+VA VGDGIND+PALA AD+G+A+G+G D VL+R+ L DV+ AI
Sbjct: 83 -KEVVAFVGDGINDAPALAQADLGIAVGSG--------DIVLIRDDLRDVVAAI 127
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 639 DALERAQKIKYVIFDKTGTLTQGRATVTTA 668
DALE A+K+ VIFDKTGTLT+ + + A
Sbjct: 1 DALEVAEKVTAVIFDKTGTLTKLKESAKPA 30
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 76/118 (64%), Gaps = 8/118 (6%)
Query: 424 DAIKKLVELAPATALLVVKDK-VGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482
+AIKKLV L TA+++ K + +EE + GD + V PG K+P DG+VV G
Sbjct: 1 EAIKKLVGLQAKTAVVIRDGKEIAVPVEE-------VAVGDIVIVRPGEKIPVDGVVVEG 53
Query: 483 TSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETA 540
SYV+ESM++GE VPVLK V G TIN GVL I+AT+VG + +L+QI+ LVE A
Sbjct: 54 ESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDA 111
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 87.4 bits (215), Expect = 3e-17, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 20/178 (11%)
Query: 42 GDGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIK 101
G + +Q+ + GM C +C ++E + L GV V+L A V +DP ++
Sbjct: 16 GSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQ 75
Query: 102 NAIE---DAGFEAEILAESSTSGP----------------KPQGTIVGQY-TIGGMTCAA 141
AIE F+ + + SG + QGT I GMTCA+
Sbjct: 76 RAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCAS 135
Query: 142 CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSS 199
CV+S+EG++ L GV++ V+LA V Y+P VIS +++ AIED GFEAS V S
Sbjct: 136 CVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSES 193
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 53/73 (72%)
Query: 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGF 109
+ + GMTCA+C +S+EG + L+GV + SV+L + A V+++P ++ E+++ AIED GF
Sbjct: 126 IAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGF 185
Query: 110 EAEILAESSTSGP 122
EA +++ES ++ P
Sbjct: 186 EASVVSESCSTNP 198
Score = 60.1 bits (144), Expect = 7e-09, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 28/168 (16%)
Query: 117 SSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV 176
S T G + + Q I GM C +CV ++E + L GV+ V+L +V+YDP+
Sbjct: 9 SETLGHQGSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSC 68
Query: 177 ISKDDIANAIE---DAGFEASF---VQSSGQD----------------------KILLQV 208
S + AIE F+ S + SG D L+ +
Sbjct: 69 TSPVALQRAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAI 128
Query: 209 TGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSL 256
G+ C H +EG++S +GV+Q G VL++P +S L
Sbjct: 129 AGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEEL 176
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 38/205 (18%)
Query: 769 PDHVESFVVELEESARTGILVAYDDNL--IGVMGIADPVKREAAVVVEGLLKMGVRPVMV 826
P E V L++S+R + Y+ +L +GV+G+ DP ++E ++ G+R +M+
Sbjct: 570 PPKREEMV--LDDSSR---FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMI 624
Query: 827 TGDNWRTAHAVAREIGI---QDVMAD----------------------------VMPAGK 855
TGDN TA A+ R IGI + +AD V P+ K
Sbjct: 625 TGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHK 684
Query: 856 ADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVI 915
+ V Q I AM GDG+ND+PAL A++G+A+G+GT +A A++ VL ++ ++
Sbjct: 685 SKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIV 744
Query: 916 IAIDLSRKTFARIRLNYIFAMAYNV 940
A++ R + ++ + ++ NV
Sbjct: 745 AAVEEGRAIYNNMKQFIRYLISSNV 769
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 128/315 (40%), Gaps = 41/315 (13%)
Query: 389 VTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC 448
+T F P F +LI + G + E A+ +AI+ L E P + D+ K
Sbjct: 85 ITAFVEP--FVILLILIANAIVGVWQERNAE----NAIEALKEYEPEMGKVYRADR--KS 136
Query: 449 IEEREIDALLIQSGDTLKVLPGTKLPADGIVVW---GTSYVNESMVTGEAVPVLKEI--- 502
++ I A I GD ++V G K+PAD ++ T V++S++TGE+V V+K
Sbjct: 137 VQR--IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPV 194
Query: 503 -----------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 551
N G I L I AT G + +I + + K P+Q+
Sbjct: 195 PDPRAVNQDKKNMLFSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKL 253
Query: 552 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIAC-- 609
D ++ + + WL +G + + P +G ++ ++ + V
Sbjct: 254 DEFGEQLSKVISLICVAVWLI-----NIGHFND---PVHGGSWIRGAIYYFKIAVALAVA 305
Query: 610 --PCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT 667
P L T + + T A +++ ++E + KTGTLT + +V
Sbjct: 306 AIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCK 365
Query: 668 AKVFTKMDRGEFLTL 682
+ K+D G+F +L
Sbjct: 366 MFIIDKVD-GDFCSL 379
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 38/205 (18%)
Query: 769 PDHVESFVVELEESARTGILVAYDDNL--IGVMGIADPVKREAAVVVEGLLKMGVRPVMV 826
P E V L++S+R + Y+ +L +GV+G+ DP ++E ++ G+R +M+
Sbjct: 571 PPKREEMV--LDDSSR---FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMI 625
Query: 827 TGDNWRTAHAVAREIGI---QDVMAD----------------------------VMPAGK 855
TGDN TA A+ R IGI + +AD V P+ K
Sbjct: 626 TGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHK 685
Query: 856 ADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVI 915
+ V Q I AM GDG+ND+PAL A++G+A+G+GT +A A++ VL ++ ++
Sbjct: 686 SKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIV 745
Query: 916 IAIDLSRKTFARIRLNYIFAMAYNV 940
A++ R + ++ + ++ NV
Sbjct: 746 AAVEEGRAIYNNMKQFIRYLISSNV 770
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 129/315 (40%), Gaps = 41/315 (13%)
Query: 389 VTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC 448
+T F P F +LI + G + E A+ +AI+ L E P + D+ K
Sbjct: 86 ITAFVEP--FVILLILIANAIVGVWQERNAE----NAIEALKEYEPEMGKVYRADR--KS 137
Query: 449 IEEREIDALLIQSGDTLKVLPGTKLPADGIVVW---GTSYVNESMVTGEAVPVLKEI--- 502
++ I A I GD ++V G K+PAD ++ T V++S++TGE+V V+K
Sbjct: 138 VQR--IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPV 195
Query: 503 -----------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 551
N G I L I AT G + +I + + K P+Q+
Sbjct: 196 PDPRAVNQDKKNMLFSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKL 254
Query: 552 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIAC-- 609
D ++ + + WL +G + + P +G ++ ++ + V
Sbjct: 255 DEFGEQLSKVISLICVAVWLI-----NIGHFND---PVHGGSWIRGAIYYFKIAVALAVA 306
Query: 610 --PCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT 667
P L T + + T A +++ ++E + DKTGTLT + +V
Sbjct: 307 AIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCK 366
Query: 668 AKVFTKMDRGEFLTL 682
+ K+D G+F +L
Sbjct: 367 MFIIDKVD-GDFCSL 380
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 38/205 (18%)
Query: 769 PDHVESFVVELEESARTGILVAYDDNL--IGVMGIADPVKREAAVVVEGLLKMGVRPVMV 826
P E V L++S+R + Y+ +L +GV+G+ DP ++E ++ G+R +M+
Sbjct: 570 PPKREEMV--LDDSSR---FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMI 624
Query: 827 TGDNWRTAHAVAREIGI---QDVMAD----------------------------VMPAGK 855
TGDN TA A+ R IGI + +AD V P+ K
Sbjct: 625 TGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHK 684
Query: 856 ADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVI 915
+ V Q I AM GDG+ND+PAL A++G+A+G+GT +A A++ VL ++ ++
Sbjct: 685 SKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIV 744
Query: 916 IAIDLSRKTFARIRLNYIFAMAYNV 940
A++ R + ++ + ++ NV
Sbjct: 745 AAVEEGRAIYNNMKQFIRYLISSNV 769
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 129/315 (40%), Gaps = 41/315 (13%)
Query: 389 VTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC 448
+T F P F +LI + G + E A+ +AI+ L E P + D+ K
Sbjct: 85 ITAFVEP--FVILLILIANAIVGVWQERNAE----NAIEALKEYEPEMGKVYRADR--KS 136
Query: 449 IEEREIDALLIQSGDTLKVLPGTKLPADGIVVW---GTSYVNESMVTGEAVPVLKEI--- 502
++ I A I GD ++V G K+PAD ++ T V++S++TGE+V V+K
Sbjct: 137 VQR--IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPV 194
Query: 503 -----------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 551
N G I L I AT G + +I + + K P+Q+
Sbjct: 195 PDPRAVNQDKKNMLFSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKL 253
Query: 552 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIAC-- 609
D ++ + + WL +G + + P +G ++ ++ + V
Sbjct: 254 DEFGEQLSKVISLICVAVWLI-----NIGHFND---PVHGGSWIRGAIYYFKIAVALAVA 305
Query: 610 --PCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT 667
P L T + + T A +++ ++E + DKTGTLT + +V
Sbjct: 306 AIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCK 365
Query: 668 AKVFTKMDRGEFLTL 682
+ K+D G+F +L
Sbjct: 366 MFIIDKVD-GDFCSL 379
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 31/180 (17%)
Query: 792 DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI----QDV- 846
D +GV+G+ DP ++E ++ G+R +M+TGDN TA A+ R IGI +DV
Sbjct: 589 DLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVA 648
Query: 847 --------------------------MADVMPAGKADAVRSFQKDGSIVAMVGDGINDSP 880
A V P K+ V Q I AM GDG+ND+P
Sbjct: 649 DRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAP 708
Query: 881 ALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 940
AL A++G+A+G+GT +A A++ VL ++ ++ A++ R + ++ + ++ NV
Sbjct: 709 ALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNV 768
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 124/308 (40%), Gaps = 40/308 (12%)
Query: 389 VTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC 448
VT F P F +LI + G + E A+ +AI+ L E P + D+ K
Sbjct: 85 VTAFVEP--FVILLILIANAIVGVWQERNAE----NAIEALKEYEPEMGKVYRADR--KS 136
Query: 449 IEEREIDALLIQSGDTLKVLPGTKLPADGIVVW---GTSYVNESMVTGEAVPVLKEI--- 502
++ I A I GD ++V G K+PAD ++ T V++S++TGE+V V+K
Sbjct: 137 VQR--IKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPV 194
Query: 503 -----------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 551
N G I + I AT G + +I + + K P+Q+
Sbjct: 195 PDPRAVNQDKKNMLFSGTNIAAGKAIGIVAT-TGVGTEIGKIRDQMAATEQDKTPLQQKL 253
Query: 552 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIAC-- 609
D ++ + + WL +G + + P +G ++ ++ + V
Sbjct: 254 DEFGEQLSKVISLICVAVWLI-----NIGHFND---PVHGGSWIRGAIYYFKIAVALAVA 305
Query: 610 --PCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT 667
P L T + + T A +++ ++E + DKTGTLT + +V
Sbjct: 306 AIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCK 365
Query: 668 AKVFTKMD 675
+ ++D
Sbjct: 366 MFIIDRID 373
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 82.8 bits (203), Expect = 9e-16, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIE 105
+ I + V+GMTCAAC+ +E L + GV A+V L ++V++DP I+ IE
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIE 65
Query: 106 DAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALAT 165
G+ ++ E + ++ I GMTCAAC N +E L + GV A V A
Sbjct: 66 KLGYH--VVTEKA------------EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFAL 111
Query: 166 SLGEVEYDPTVISKDDIANAIEDAGFE 192
VEY+P S D+ A++ G++
Sbjct: 112 ETVTVEYNPKEASVSDLKEAVDKLGYK 138
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIED 106
+ + + GMTCAAC+N +E L ++GVA A V V ++P D+K A++
Sbjct: 75 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 134
Query: 107 AGFEAEILAESST 119
G++ ++ E +
Sbjct: 135 LGYKLKLKGEQDS 147
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIE 105
+ I + V+GMTCAAC+ +E L + GV A+V L +V++DP I+ IE
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE 65
Query: 106 DAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALAT 165
G+ ++ E + ++ I GMTCAAC N +E L + GV A V A
Sbjct: 66 KLGYH--VVTEKA------------EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFAL 111
Query: 166 SLGEVEYDPTVISKDDIANAIEDAGFE 192
VEY+P S D+ A++ G++
Sbjct: 112 ETVTVEYNPKEASVSDLKEAVDKLGYK 138
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIED 106
+ + + GMTCAAC+N +E L ++GVA A V V ++P D+K A++
Sbjct: 75 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 134
Query: 107 AGFEAEILAESST 119
G++ ++ E +
Sbjct: 135 LGYKLKLKGEQDS 147
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 54/203 (26%)
Query: 795 LIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI----------- 843
+G+M + DP + V G++ +MVTGD+ TA A+A+ +GI
Sbjct: 590 FVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDI 649
Query: 844 ------------------------------QDVMADVM------------PAGKADAVRS 861
+V+ D++ P K V
Sbjct: 650 AARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEG 709
Query: 862 FQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDL 920
Q+ G+IVA+ GDG+NDSPAL AD+G+A+G +G+D++ +AAD +L+ ++ ++ ++
Sbjct: 710 CQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEE 769
Query: 921 SRKTFARIRLNYIFAMAYNVIAI 943
R F ++ + + + N+ I
Sbjct: 770 GRLIFDNLKKSIAYTLTSNIPEI 792
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 131/304 (43%), Gaps = 40/304 (13%)
Query: 381 VGALLYGVVTGFWSPTYFETS-------AMLITFVLFGKYLEILAKGKTSDAIKKLVELA 433
+GA+L + G + T E + +L T V+ + K+S + +
Sbjct: 111 IGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMV 170
Query: 434 PATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD-GIVVWGTSYVNESMVT 492
P AL V++D E+ I+A + +GD ++V G ++PAD I+ V+ S +T
Sbjct: 171 PQQAL-VIRDG-----EKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLT 224
Query: 493 GEAVPVLK--EINS--PVIGGTINLHGVLHIQATK------VGSDAVLSQIISLVETAQM 542
GE+ P + E +S P+ I ++ T G V+ +I +L ++
Sbjct: 225 GESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIATLASGLEV 284
Query: 543 SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSI 602
+ PI + I + A+F + +++ ++ Y WL A++F I
Sbjct: 285 GRTPIAIEIEHFIHIITGV----AVFLGVSFFILSLILGY--SWLE--------AVIFLI 330
Query: 603 SVVVIACPCALGLATPTAVMVATGVG-ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQG 661
++V P L LAT T + T A L+K +A+E + DKTGTLTQ
Sbjct: 331 GIIVANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQN 389
Query: 662 RATV 665
R TV
Sbjct: 390 RMTV 393
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 60/201 (29%)
Query: 797 GVMGIADPVKREAAVVVEGLLKM---GVRPVMVTGDNWRTAHAVAREIGI--------QD 845
G++ + DP + A V + +LK G+R +MVTGD+ TA A+A +GI +D
Sbjct: 597 GLVSMIDPPR---ATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVED 653
Query: 846 VMA-------------------------DVMPAGKADAVR-------------------- 860
+ A D+ P+ +A+R
Sbjct: 654 IAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVE 713
Query: 861 SFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAID 919
S Q+ G+IVA+ GDG+NDSPAL AD+G+A+G AG+D A AAD +L+ ++ ++ ++
Sbjct: 714 SCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVE 773
Query: 920 LSRKTFARIRLNYIFAMAYNV 940
R F ++ + + + N+
Sbjct: 774 QGRLIFDNLKKSIAYTLTKNI 794
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 121/277 (43%), Gaps = 37/277 (13%)
Query: 402 AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQS 461
A+++ FG Y E K+++ I L P A V++D ++ +I+A +
Sbjct: 148 AVVVVTGCFGYYQEF----KSTNIIASFKNLVPQQAT-VIRDG-----DKFQINADQLVV 197
Query: 462 GDTLKVLPGTKLPAD-GIVVWGTSYVNESMVTGEAVPVLK----------EINSPVIGGT 510
GD +++ G ++PAD I+ V+ S +TGE+ P + E + T
Sbjct: 198 GDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFST 257
Query: 511 INLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTW 570
+ L G G ++ +I SL + K PI + FV I+ LA+
Sbjct: 258 MCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEH----FVDIIAGLAILFG 313
Query: 571 LCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVG-A 629
+++ + Y F+ A++F +++VV P L LAT T + T A
Sbjct: 314 ATFFIVAMCIGY----------TFLRAMVFFMAIVVAYVPEGL-LATVTVCLSLTAKRLA 362
Query: 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVT 666
+ ++K +A+E + DKTGTLTQ R TV+
Sbjct: 363 SKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVS 399
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 56/207 (27%)
Query: 793 DNL--IGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIG-------- 842
DNL +G++ + DP + V G++ +MVTGD+ TA A+A+ +G
Sbjct: 556 DNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNET 615
Query: 843 IQDVMA---------------------------------DVM------------PAGKAD 857
++D+ A D++ P K
Sbjct: 616 VEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLI 675
Query: 858 AVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVII 916
V Q+ G+IVA+ GDG+NDSPA AD+G+A+G AG+D++ +AAD +L+ ++ ++
Sbjct: 676 IVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVT 735
Query: 917 AIDLSRKTFARIRLNYIFAMAYNVIAI 943
++ R F ++ + + + N+ I
Sbjct: 736 GVEEGRLIFDNLKKSIAYTLTSNIPEI 762
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 121/277 (43%), Gaps = 37/277 (13%)
Query: 401 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQ 460
SA++I F Y E K+S ++ + P AL++ E+ I+A +
Sbjct: 112 SAVVIITGCFSYYQE----AKSSKIMESFKNMVPQQALVIRNG------EKMSINAEEVV 161
Query: 461 SGDTLKVLPGTKLPAD-GIVVWGTSYVNESMVTGEAVPVLKEIN----SPVIGGTINLHG 515
GD ++V G ++PAD I+ V+ S +TGE+ P + + +P+ I
Sbjct: 162 VGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFS 221
Query: 516 VLHIQATK------VGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFT 569
++ T G V+ +I +L + + PI + F+ I+ +A+F
Sbjct: 222 TNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEH----FIHIITGVAVFL 277
Query: 570 WLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVG- 628
+ +++ ++ Y WL A++F I ++V P L LAT T + T
Sbjct: 278 GVSFFILSLILEY--TWLE--------AVIFLIGIIVANVPEGL-LATVTVCLTLTAKRM 326
Query: 629 ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATV 665
A L+K +A+E + DKTGTLTQ R TV
Sbjct: 327 ARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTV 363
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 56/207 (27%)
Query: 793 DNL--IGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIG-------- 842
DNL +G++ + DP + V G++ +MVTGD+ TA A+A+ +G
Sbjct: 550 DNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNET 609
Query: 843 IQDVMA---------------------------------DVM------------PAGKAD 857
++D+ A D++ P K
Sbjct: 610 VEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLI 669
Query: 858 AVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVII 916
V Q+ G+IVA+ GDG+NDSPA AD+G+A+G AG+D++ +AAD +L+ ++ ++
Sbjct: 670 IVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVT 729
Query: 917 AIDLSRKTFARIRLNYIFAMAYNVIAI 943
++ R F ++ + + + N+ I
Sbjct: 730 GVEEGRLIFDNLKKSIAYTLTSNIPEI 756
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 37/277 (13%)
Query: 401 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQ 460
SA++I F Y E K+S ++ + P AL++ E+ I+A +
Sbjct: 106 SAVVIITGCFSYYQE----AKSSKIMESFKNMVPQQALVIRNG------EKMSINAEEVV 155
Query: 461 SGDTLKVLPGTKLPAD-GIVVWGTSYVNESMVTGEAVPVLKEIN----SPVIGGTINLHG 515
GD ++V G ++PAD I+ V+ S +TGE+ P + + +P+ I
Sbjct: 156 VGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFS 215
Query: 516 VLHIQATK------VGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFT 569
++ T G V+ +I +L + + PI + F+ I+ +A+F
Sbjct: 216 TNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEH----FIHIITGVAVFL 271
Query: 570 WLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVG- 628
+ +++ ++ Y WL A++F I ++V P L LAT T + T
Sbjct: 272 GVSFFILSLILEY--TWLE--------AVIFLIGIIVANVPEGL-LATVTVCLTLTAKRM 320
Query: 629 ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATV 665
A L+K +A+E + KTGTLTQ R TV
Sbjct: 321 ARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTV 357
>pdb|2KOY|A Chain A, Structure Of The E1064a Mutant Of The N-Domain Of Wilson
Disease Associated Protein
Length = 141
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 30/137 (21%)
Query: 678 EFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFS 737
+ L +V +A ASSEHPL AV +Y KE G+ L +DF
Sbjct: 24 KVLAVVGTAAASSEHPLGVAVTKYC-------------------KEELGTETLGYCTDFQ 64
Query: 738 ALPGRGIQCFISGKQ-----------VLVGNRKLLNESGITIPDHVESFVVELEESARTG 786
A+PG GI C +S + VL+GNR+ L +G+TI V + + E +T
Sbjct: 65 AVPGCGIGCKVSNVEGILAAVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTA 124
Query: 787 ILVAYDDNLIGVMGIAD 803
ILVA D L G++ IAD
Sbjct: 125 ILVAIDGVLCGMIAIAD 141
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 42/62 (67%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193
I GMTC +CV S+EG++ PGVK V+LA S G VEYDP + S + + AIED GF+A
Sbjct: 9 IDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDA 68
Query: 194 SF 195
+
Sbjct: 69 TL 70
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGF 109
+ + GMTC +C S+EG + GV V+L + V +DP L E ++ AIED GF
Sbjct: 7 INIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGF 66
Query: 110 EAEI 113
+A +
Sbjct: 67 DATL 70
>pdb|2GGP|B Chain B, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FVQ|A Chain A, Solution Structure Of The Yeast Copper Transporter Domain
Ccc2a In The Apo And Cu(I) Loaded States
Length = 72
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIE 105
R + + V GMTC+AC+N++ L LKGV K ++L+ N+ V +D ++ D IK IE
Sbjct: 2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADS-IKEIIE 60
Query: 106 DAGFEAEILAES 117
D GF+ EIL +S
Sbjct: 61 DCGFDCEILRDS 72
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193
+ GMTC+AC N++ LR L GV + ++L T+ +V YD V + D I IED GF+
Sbjct: 8 VHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEV-TADSIKEIIEDCGFDC 66
Query: 194 SFVQSS 199
++ S
Sbjct: 67 EILRDS 72
>pdb|1FVS|A Chain A, Solution Structure Of The Yeast Copper Transporter Domain
Ccc2a In The Apo And Cu(I) Load States
Length = 72
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIE 105
R + + V GMTC+AC+N++ L LKGV K ++L+ N+ V +D ++ D IK IE
Sbjct: 2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADS-IKEIIE 60
Query: 106 DAGFEAEILAES 117
D GF+ EIL +S
Sbjct: 61 DCGFDCEILRDS 72
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193
+ GMTC+AC N++ LR L GV + ++L T+ +V YD V + D I IED GF+
Sbjct: 8 VHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEV-TADSIKEIIEDCGFDC 66
Query: 194 SFVQSS 199
++ S
Sbjct: 67 EILRDS 72
>pdb|1YJU|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain Of Menkes Protein
pdb|1YJV|A Chain A, Solution Structure Of The Cu(i) Form Of The Sixth Soluble
Domain Of Menkes Protein
Length = 75
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 41 IGDGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDI 100
+GDG+ +++ V GMTCA+C + +E +L +G+ SVAL NKA + +DP+++ DI
Sbjct: 1 MGDGV--LELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDI 58
Query: 101 KNAIEDAGFEAEIL 114
+ IE GFEA ++
Sbjct: 59 IHTIESLGFEASLV 72
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 126 GTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANA 185
G V + + GMTCA+CV+ +E L G+ VALAT+ ++YDP +I DI +
Sbjct: 2 GDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHT 61
Query: 186 IEDAGFEASFVQ 197
IE GFEAS V+
Sbjct: 62 IESLGFEASLVK 73
>pdb|2ARF|A Chain A, Solution Structure Of The Wilson Atpase N-Domain In The
Presence Of Atp
Length = 165
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 67/161 (41%), Gaps = 54/161 (33%)
Query: 678 EFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFS 737
+ L +V +AEASSEHPL AV +Y KE G+ L +DF
Sbjct: 24 KVLAVVGTAEASSEHPLGVAVTKYC-------------------KEELGTETLGYCTDFQ 64
Query: 738 ALPGRGIQCFISGKQ-----------------------------------VLVGNRKLLN 762
A+PG GI C +S + VL+GNR+ L
Sbjct: 65 AVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAGSLPAEKDAVPQTFSVLIGNREWLR 124
Query: 763 ESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIAD 803
+G+TI V + + E +T ILVA D L G++ IAD
Sbjct: 125 RNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIAD 165
>pdb|1YJR|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
pdb|1YJT|A Chain A, Solution Structure Of The Cu(I) Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
Length = 75
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 41 IGDGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDI 100
+GDG+ +++ V GMTCA+C + +E +L +G+ SVAL NKA + +DP+++ DI
Sbjct: 1 MGDGV--LELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDI 58
Query: 101 KNAIEDAGFEAEIL 114
+ IE GFE ++
Sbjct: 59 IHTIESLGFEPSLV 72
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 126 GTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANA 185
G V + + GMTCA+CV+ +E L G+ VALAT+ ++YDP +I DI +
Sbjct: 2 GDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHT 61
Query: 186 IEDAGFEASFVQ 197
IE GFE S V+
Sbjct: 62 IESLGFEPSLVK 73
>pdb|2KMV|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Free Form
pdb|2KMX|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Bound Form
Length = 185
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/199 (25%), Positives = 76/199 (38%), Gaps = 74/199 (37%)
Query: 660 QGRATVTTAKVFTKMDR---GEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPD 716
G V KV T+ +R + L +V +AE++SEHPL A+ +Y +
Sbjct: 5 HGTPVVNQVKVLTESNRISHHKILAIVGTAESNSEHPLGTAITKYCK------------- 51
Query: 717 GQSHSKESTGSGWLLDVSDFSALPGRG-----------------------------IQCF 747
Q E+ G+ DF +PG G +Q
Sbjct: 52 -QELDTETLGT-----CIDFQVVPGCGISCKVTNIEGLLHKNNWNIEDNNIKNASLVQID 105
Query: 748 ISGKQ-----------------------VLVGNRKLLNESGITIPDHVESFVVELEESAR 784
S +Q VL+GNR+ + +G+ I + V F+ E E R
Sbjct: 106 ASNEQSSTSSSMIIDAQISNALNAQQYKVLIGNREWMIRNGLVINNDVNDFMTEHERKGR 165
Query: 785 TGILVAYDDNLIGVMGIAD 803
T +LVA DD L G++ IAD
Sbjct: 166 TAVLVAVDDELCGLIAIAD 184
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
+++ V GMTC +C++++EG + L+GV + V+L +A +V+ P L+ E++K IE
Sbjct: 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 70
Query: 108 GFEA 111
GF A
Sbjct: 71 GFPA 74
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 126 GTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANA 185
G +V + + GMTC +C +++EG + L GV+R V+L + Y P +IS +++
Sbjct: 7 GEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQ 66
Query: 186 IEDAGFEASFVQ 197
IE GF A FV+
Sbjct: 67 IEAMGFPA-FVK 77
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I) Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
Length = 76
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
+++ V GMTC +C++++EG + L+GV + V+L +A +V+ P L+ E++K IE
Sbjct: 5 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 64
Query: 108 GFEA 111
GF A
Sbjct: 65 GFPA 68
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 126 GTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANA 185
G +V + + GMTC +C +++EG + L GV+R V+L + Y P +IS +++
Sbjct: 1 GEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQ 60
Query: 186 IEDAGFEA 193
IE GF A
Sbjct: 61 IEAMGFPA 68
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG 108
Q+ V GM CAAC++S+E AL LKGVA+ASV + + V +DP V + I+ I G
Sbjct: 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 65
Query: 109 F 109
+
Sbjct: 66 Y 66
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%)
Query: 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAG 190
Q +GGM CAAC +S+E L L GV A V +AT V YDP +S+ I I G
Sbjct: 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 65
Query: 191 F 191
+
Sbjct: 66 Y 66
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 206 LQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAG 262
+QV G+ C A +E L KGV + +G L V +DP+ +S ++ + IA
Sbjct: 7 MQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 63
>pdb|2K1R|A Chain A, The Solution Nmr Structure Of The Complex Between Mnk1 And
Hah1 Mediated By Cu(I)
Length = 73
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNA 103
G+ + + V GMTC +C ++E + + GV V+L + A +++DP L + ++ A
Sbjct: 2 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEA 61
Query: 104 IEDAGFEAEI 113
I+D GF+A I
Sbjct: 62 IDDMGFDAVI 71
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 133 TIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFE 192
++ GMTC +CV ++E + + GV V+L + YDP + + + AI+D GF+
Sbjct: 9 SVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFD 68
Query: 193 A 193
A
Sbjct: 69 A 69
>pdb|1KVI|A Chain A, Solution Structure Of The Reduced Form Of The First Heavy
Metal Binding Motif Of The Menkes Protein
pdb|1KVJ|A Chain A, Solution Structure Of The Cu(I) Bound Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
Length = 79
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNA 103
G+ + + V GMTC +C ++E + + GV V+L + A +++DP L + ++ A
Sbjct: 6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEA 65
Query: 104 IEDAGFEAEI 113
I+D GF+A I
Sbjct: 66 IDDMGFDAVI 75
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 133 TIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFE 192
++ GMTC +CV ++E + + GV V+L + YDP + + + AI+D GF+
Sbjct: 13 SVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFD 72
Query: 193 A 193
A
Sbjct: 73 A 73
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain Of
Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193
+ GMTCA+CV ++E LR G+ +VAL EV Y+P VI IA I + GF A
Sbjct: 9 VTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGA 68
Query: 194 SFVQS 198
+ +++
Sbjct: 69 TVIEN 73
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGF 109
+ VTGMTCA+C ++E L +G+ VAL+ KA+V ++P +++ I I + GF
Sbjct: 7 IQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGF 66
Query: 110 EAEIL 114
A ++
Sbjct: 67 GATVI 71
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAI 104
M + + V GM+C C +VE ++ L GV+ V L K DV FD D V +DI +AI
Sbjct: 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAI 60
Query: 105 EDAGFE 110
ED G++
Sbjct: 61 EDQGYD 66
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193
+ GM+C CV +VE + L GV V L +V +D +S DIA+AIED G++
Sbjct: 8 VEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67
Query: 194 SFVQ 197
+ ++
Sbjct: 68 AKIE 71
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A Trinuclear
Cu(I) Cluster
Length = 69
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAI 104
M + + V GM+C C +VE ++ L GV+ V L K DV FD D V +DI +AI
Sbjct: 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAI 60
Query: 105 EDAGFE 110
ED G++
Sbjct: 61 EDQGYD 66
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193
+ GM+C CV +VE + L GV V L +V +D +S DIA+AIED G++
Sbjct: 8 VEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67
Query: 194 S 194
+
Sbjct: 68 A 68
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAI 104
++ Q+ V GM C +C +EG+L LKGVA+ASV + + V +DP V + I+ I
Sbjct: 7 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERI 66
Query: 105 EDAGFEAEILAESSTS 120
G+ LAE +S
Sbjct: 67 AALGY---TLAEPKSS 79
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAG 190
Q +GGM C +C +EG L L GV A V +AT V YDP +S+ I I G
Sbjct: 11 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 70
Query: 191 FEASFVQSS 199
+ + +SS
Sbjct: 71 YTLAEPKSS 79
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 197 QSSGQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSL 256
QSS +QV G+ C +EG L KGV + +G L V +DP+ +S ++
Sbjct: 3 QSSPLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITI 62
Query: 257 VDGIAG 262
+ IA
Sbjct: 63 QERIAA 68
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAI 104
++ Q+ V GM C +C +EG+L LKGVA+ASV + + V +DP V + I+ I
Sbjct: 2 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERI 61
Query: 105 EDAGFEAEILAESSTS 120
G+ LAE +S
Sbjct: 62 AALGY---TLAEPKSS 74
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAG 190
Q +GGM C +C +EG L L GV A V +AT V YDP +S+ I I G
Sbjct: 6 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 65
Query: 191 FEASFVQSS 199
+ + +SS
Sbjct: 66 YTLAEPKSS 74
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 206 LQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAG 262
+QV G+ C +EG L KGV + +G L V +DP+ +S ++ + IA
Sbjct: 7 MQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 63
>pdb|3CJK|B Chain B, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 75
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
+ + V GMTC +C ++E + + GV V+L + A +++DP L + ++ AI+D
Sbjct: 4 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 63
Query: 108 GFEAEI 113
GF+A I
Sbjct: 64 GFDAVI 69
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 133 TIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFE 192
++ GMTC +CV ++E + + GV V+L + YDP + + + AI+D GF+
Sbjct: 7 SVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFD 66
Query: 193 A 193
A
Sbjct: 67 A 67
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A Potential
Copper-Translocating P-Type Atpase From Bacillus
Subtilis In The Cu(I)loaded State
Length = 80
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDA 189
++ I GMTCAAC N +E L + GV A V A VEY+P S D+ A++
Sbjct: 5 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKL 64
Query: 190 GFE 192
G++
Sbjct: 65 GYK 67
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIED 106
+ + + GMTCAAC+N +E L ++GVA A V V ++P D+K A++
Sbjct: 4 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 63
Query: 107 AGFEAEILAESST 119
G++ ++ E +
Sbjct: 64 LGYKLKLKGEQDS 76
>pdb|2VOY|J Chain J, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 118
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 27/130 (20%)
Query: 675 DRGEFLTLVASAEASSEHPLAKAVVEYA-RHFHFFDDPSLNPDGQSHSKESTGSGWLLDV 733
D E L L A AE SEHP+A+A+V+ A H +P
Sbjct: 14 DERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPE--------------------- 52
Query: 734 SDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDD 793
+ G G+ +LVGN++L + G+ + + VE + +LE A+T ++VA +
Sbjct: 53 -KVEVIAGEGVVA----DGILVGNKRLXEDFGVAVSNEVELALEKLEREAKTAVIVARNG 107
Query: 794 NLIGVMGIAD 803
+ G++ ++D
Sbjct: 108 RVEGIIAVSD 117
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDA 189
++ I GMTCAAC N +E L + GV A V A VEY+P S D+ A++
Sbjct: 5 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKL 64
Query: 190 GFE 192
G++
Sbjct: 65 GYK 67
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIED 106
+ + + GMTCAAC+N +E L ++GVA A V V ++P D+K A++
Sbjct: 4 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 63
Query: 107 AGFEAEILAESST 119
G++ ++ E +
Sbjct: 64 LGYKLKLKGEQDS 76
>pdb|2L3M|A Chain A, Solution Structure Of The Putative Copper-Ion-Binding
Protein From Bacillus Anthracis Str. Ames
Length = 71
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 43 DGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKN 102
+ M ++ + V GM+C C N++E ++ L GV + V L + +V D +V +DI
Sbjct: 2 NAMEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVA 61
Query: 103 AIEDAGFEAE 112
IED G++ +
Sbjct: 62 VIEDQGYDVQ 71
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFE 192
+ GM+C CVN++E ++ L GV++ V LA EV D +V++ DI IED G++
Sbjct: 11 VEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYD 69
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIE 105
+ I + V+GMTCAAC+ +E L + GV A+V L +V++DP I+ IE
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE 65
Query: 106 DAGFEAEI 113
G+ I
Sbjct: 66 KLGYHVVI 73
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 30/58 (51%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGF 191
+ GMTCAAC +E L+ +PGV A V LAT V YDP I IE G+
Sbjct: 12 VSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNA 103
+ + + V GMTCAAC +V+ AL ++GV+K V + +A V FD + + A
Sbjct: 1 ATQTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKA 60
Query: 104 IEDAGFEAEI 113
DAG+ + +
Sbjct: 61 TADAGYPSSV 70
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193
+ GMTCAAC +V+ L + GV + V V +D T S + A DAG+ +
Sbjct: 9 VPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKATADAGYPS 68
Query: 194 SFVQ 197
S Q
Sbjct: 69 SVKQ 72
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNA 103
+ + + V GMTC+AC +V+ A+ ++GV+K V +A V FD + + A
Sbjct: 1 ATQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKA 60
Query: 104 IEDAGFEAEI 113
DAG+ + +
Sbjct: 61 TADAGYPSSV 70
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 133 TIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFE 192
++ GMTC+AC +V+ + + GV + V T V +D S + A DAG+
Sbjct: 8 SVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYP 67
Query: 193 ASFVQ 197
+S Q
Sbjct: 68 SSVKQ 72
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
I + + GM CAAC++S+E A+ + GV V +A V + + + + +A+E A
Sbjct: 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE-TTPQILTDAVERA 63
Query: 108 GFEAEILAE 116
G+ A +L +
Sbjct: 64 GYHARVLKQ 72
Score = 37.4 bits (85), Expect = 0.041, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 136 GMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195
GM CAAC +S+E + +PGV+ V A V Y + + +A+E AG+ A
Sbjct: 11 GMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGET-TPQILTDAVERAGYHARV 69
Query: 196 VQ 197
++
Sbjct: 70 LK 71
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
I + + GM CAAC++S+E A+ + GV V +A V + + + + +A+E A
Sbjct: 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE-TTPQILTDAVERA 63
Query: 108 GFEAEIL 114
G+ A +L
Sbjct: 64 GYHARVL 70
Score = 37.4 bits (85), Expect = 0.048, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 136 GMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195
GM CAAC +S+E + +PGV+ V A V Y + + +A+E AG+ A
Sbjct: 11 GMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGET-TPQILTDAVERAGYHARV 69
Query: 196 VQ 197
++
Sbjct: 70 LK 71
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
+++ V GMTC C +V AL + GV K V+L + +A V D + + A+E+
Sbjct: 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTAD---PKALVQAVEEE 58
Query: 108 GFEAEILA 115
G++AE+LA
Sbjct: 59 GYKAEVLA 66
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVAL--ATSLGEVEYDPTVISKDDIANAIEDAGF 191
+ GMTC CV +V L+ +PGV++ V+L +L E DP + A+E+ G+
Sbjct: 6 VEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKA-----LVQAVEEEGY 60
Query: 192 EA 193
+A
Sbjct: 61 KA 62
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Zn(Ii)-Form
Length = 73
Score = 37.7 bits (86), Expect = 0.036, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGF 191
+ + GM CAAC VE +R L GV + V AT V+ D + + + +A++ AG+
Sbjct: 7 WKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI--RAQVESALQKAGY 64
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 52 VTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGF 109
V+GM CAAC+ VE A+ L GV + V K +V D D +++A++ AG+
Sbjct: 9 VSGMDCAACARKVENAVRQLAGVNQVQVLFATEK--LVVDADNDIRAQVESALQKAGY 64
>pdb|2PQ0|A Chain A, Crystal Structure Of Hyopthetical Protein (Gk_1056) From
Geobacillus Kaustophilus Hta426
pdb|2PQ0|B Chain B, Crystal Structure Of Hyopthetical Protein (Gk_1056) From
Geobacillus Kaustophilus Hta426
pdb|2QYH|A Chain A, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|B Chain B, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|C Chain C, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|D Chain D, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
Length = 258
Score = 36.6 bits (83), Expect = 0.065, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 844 QDVMADVMPAG--KADAVRSFQK----DGSIVAMVGDGINDSPALAAADVGMAIGAGTDI 897
DV DV+PAG KA+ +R + D V GDG+ND L+ G+A G +
Sbjct: 171 HDVSTDVLPAGGSKAEGIRXXIEKLGIDKKDVYAFGDGLNDIEXLSFVGTGVAXGNAHEE 230
Query: 898 AIEAADYV 905
AD+V
Sbjct: 231 VKRVADFV 238
>pdb|2G9O|A Chain A, Solution Structure Of The Apo Form Of The Third Metal-
Binding Domain Of Atp7a Protein (Menkes Disease Protein)
pdb|2GA7|A Chain A, Solution Structure Of The Copper(I) Form Of The Third
Metal- Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
Length = 90
Score = 36.2 bits (82), Expect = 0.093, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 52 VTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIE 105
+ GM C +C +++E L L+ V+ V+L A VV++ V E ++ AIE
Sbjct: 9 IDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIE 62
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIE 187
+ I GM C +CV+++E L L V VV+L V Y+ + ++ + + AIE
Sbjct: 7 FIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIE 62
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 36.2 bits (82), Expect = 0.095, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
I + + GM C +C++S+E A+ + GV V +A V + + + + +A+E A
Sbjct: 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE-TTPQILTDAVERA 62
Query: 108 GFEAEIL 114
G+ A +L
Sbjct: 63 GYHARVL 69
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 136 GMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193
GM C +C +S+E + +PGV+ V A V Y + + +A+E AG+ A
Sbjct: 10 GMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGET-TPQILTDAVERAGYHA 66
>pdb|1CPZ|A Chain A, Copper Chaperone Of Enterococcus Hirae (Apo-Form)
Length = 68
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG 108
+ V GM+C C +E A+ + GV K V L + KA V FD V+ +I AI + G
Sbjct: 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELG 62
Query: 109 FEAEIL 114
++AE++
Sbjct: 63 YQAEVI 68
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAG 190
++++ GM+C CV +E + + GVK+ V L V++D + +I AI + G
Sbjct: 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELG 62
Query: 191 FEASFV 196
++A +
Sbjct: 63 YQAEVI 68
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 853 AGKADAVRSF-QKDGSIVAM---VGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMR 908
AGKA A+R F Q+ G +A VGDG ND LAAA +G+A A + E AD L
Sbjct: 322 AGKATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAFNAKPALR-EVADASLSH 380
Query: 909 NSLEDVIIAIDLSR 922
L+ V+ + ++R
Sbjct: 381 PYLDTVLFLLGVTR 394
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 25/146 (17%)
Query: 89 VFDPDLVKDEDIKNAIEDAGFEAEILAESST----SGPKPQGTIVGQYTIGGMTCAACVN 144
V D D+ E ++N + AGFE E +ST P+ G +V + GM+
Sbjct: 9 VVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQE 68
Query: 145 SVEGILRGLPGV------KRAVVALATSLGEVEYDPTVISKDDIANAIEDA--------- 189
+ I G+P V + A G +E+ P + + +AIE
Sbjct: 69 QLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQ 128
Query: 190 ------GFEASFVQSSGQDKILLQVT 209
E F +G+++ +LQ+T
Sbjct: 129 ARETQDQLEQLFSSLTGREQQVLQLT 154
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193
I GMTC +C V+ L +PGV+ A+V+ ++ P S D + A+ G++A
Sbjct: 6 ITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGT-SPDALTAAVAGLGYKA 64
Query: 194 SFVQS 198
+ +
Sbjct: 65 TLADA 69
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG 108
+ +TGMTC +C+ V+ AL + GV A V+ + A + P D + A+ G
Sbjct: 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDA-LTAAVAGLG 61
Query: 109 FEAEI 113
++A +
Sbjct: 62 YKATL 66
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 22/117 (18%)
Query: 808 EAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD--VMPAGKADAVR-SFQ- 863
EA +VE L + G + V+++G ++ +E+G + MA+ + GK +R F+
Sbjct: 83 EARELVETLREKGFKVVLISG-SFEEVLEPFKELG-DEFMANRAIFEDGKFQGIRLRFRD 140
Query: 864 --------KDGSIVAMVGDGINDSPALAAADVGMAIGA---GTDIAI----EAADYV 905
+DG I+AM GDG D+ AD+G+A+G G D+ + E D++
Sbjct: 141 KGEFLKRFRDGFILAM-GDGYADAKMFERADMGIAVGREIPGADLLVKDLKELVDFI 196
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 869 VAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 919
V +GDG ND + A G+A G + +AADY+ + N + V AI+
Sbjct: 216 VIAIGDGYNDLSXIKFAGXGVAXGNAQEPVKKAADYITLTNDEDGVAEAIE 266
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 869 VAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 919
V +GDG ND + A +G+A+G + +AADY+ + N + V AI+
Sbjct: 216 VIAIGDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYITLTNDEDGVAEAIE 266
>pdb|3OBF|A Chain A, Crystal Structure Of Putative Transcriptional Regulator,
Iclr Family; Targeted Domain 129...302
pdb|3OBF|B Chain B, Crystal Structure Of Putative Transcriptional Regulator,
Iclr Family; Targeted Domain 129...302
Length = 176
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 733 VSDFSALPGRGIQCFISGKQVLVGN------RKLLNESGITIP----DHVESFVVELEES 782
V + L R + S QV + + R+LL IT+ D VE++++ L+ES
Sbjct: 46 VKHLAPLGARYNEALSSSVQVFLASENEDRVRQLLRSGSITLTGVDEDAVEAYLLRLKES 105
Query: 783 ARTGILVAYDDNLIGVMGIADPV 805
G V + + I +G+A PV
Sbjct: 106 XERGWAVNFGETSIEEVGVASPV 128
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 867 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYV 905
S + GDG ND P L AA +G+A+G ++ AD+V
Sbjct: 211 SEIMACGDGGNDIPMLKAAGIGVAMGNASEKVQSVADFV 249
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 853 AGKADAVRSFQKDGSI----VAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMR 908
A K A++ K +I A VGD +ND L AA G+A G + AD V +
Sbjct: 215 ASKGQALKRLAKQLNIPLEETAAVGDSLNDKSXLEAAGKGVAXGNAREDIKSIADAVTLT 274
Query: 909 N 909
N
Sbjct: 275 N 275
>pdb|3QYG|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida
Length = 219
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 580 GAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLA----TPTAVMVATGVGANNGVLI 635
G Y E WL VF + V+ A A G A T T V+ V +G+L
Sbjct: 66 GTYYEHWL------HVFENLLVEKGVLTATEVATGKAASGKTATPVLTPAIV---DGLLS 116
Query: 636 KGGDAL-ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-------MDRGEFLTLVASAE 687
G A E + ++ + DK L + T +T+ +D G F+T +A
Sbjct: 117 TGASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAH 176
Query: 688 ASSEHP 693
EHP
Sbjct: 177 GKGEHP 182
>pdb|3QZ9|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida
Length = 219
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 580 GAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLA----TPTAVMVATGVGANNGVLI 635
G Y E WL VF + V+ A A G A T T V+ V +G+L
Sbjct: 66 GTYYEHWL------HVFENLLVEKGVLTATEVATGKAASGKTATPVLTPAIV---DGLLS 116
Query: 636 KGGDAL-ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-------MDRGEFLTLVASAE 687
G A E + ++ + DK L + T +T+ +D G F+T +A
Sbjct: 117 TGASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAH 176
Query: 688 ASSEHP 693
EHP
Sbjct: 177 GKGEHP 182
>pdb|3QXE|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QZ5|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida
Length = 219
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 580 GAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLA----TPTAVMVATGVGANNGVLI 635
G Y E WL VF + V+ A A G A T T V+ V +G+L
Sbjct: 66 GTYYEHWL------HVFENLLVEKGVLTATEVATGKAASGKTATPVLTPAIV---DGLLS 116
Query: 636 KGGDAL-ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-------MDRGEFLTLVASAE 687
G A E + ++ + DK L + T +T+ +D G F+T +A
Sbjct: 117 TGASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAH 176
Query: 688 ASSEHP 693
EHP
Sbjct: 177 GKGEHP 182
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
IQ+ V M C +C+ +V A+ A V L K + + +E ++ AI A
Sbjct: 2 IQLTVPTMDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTIT---SALGEEQLRTAIASA 58
Query: 108 GFEAE 112
G E E
Sbjct: 59 GHEVE 63
>pdb|3QYH|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida
Length = 219
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 580 GAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLA----TPTAVMVATGVGANNGVLI 635
G Y E WL VF + V+ A A G A T T V+ V +G+L
Sbjct: 66 GTYYELWL------HVFENLLVEKGVLTATEVATGKAASGKTATPVLTPAIV---DGLLS 116
Query: 636 KGGDAL-ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-------MDRGEFLTLVASAE 687
G A E + ++ + DK L + T +T+ +D G F+T +A
Sbjct: 117 TGASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAH 176
Query: 688 ASSEHP 693
EHP
Sbjct: 177 GKGEHP 182
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 125 QGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIAN 184
QGT+ MTC +CV++V L+G+ GV+ V L + V T + ++
Sbjct: 15 QGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVH---TTLPSQEVQA 71
Query: 185 AIEDAGFEA 193
+E G +A
Sbjct: 72 LLEGTGRQA 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,367,899
Number of Sequences: 62578
Number of extensions: 1135082
Number of successful extensions: 3190
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2963
Number of HSP's gapped (non-prelim): 182
length of query: 998
length of database: 14,973,337
effective HSP length: 108
effective length of query: 890
effective length of database: 8,214,913
effective search space: 7311272570
effective search space used: 7311272570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)