Query 001896
Match_columns 998
No_of_seqs 571 out of 4118
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 11:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 100.0 3E-155 6E-160 1320.0 73.9 903 53-995 1-915 (951)
2 COG2217 ZntA Cation transport 100.0 6E-134 1E-138 1179.6 80.5 706 203-984 3-710 (713)
3 PRK10671 copA copper exporting 100.0 6E-122 1E-126 1140.0 93.3 811 46-988 3-834 (834)
4 PRK11033 zntA zinc/cadmium/mer 100.0 2E-108 4E-113 998.2 79.7 688 201-985 52-740 (741)
5 TIGR01511 ATPase-IB1_Cu copper 100.0 6.5E-99 1E-103 891.3 68.9 561 346-963 1-562 (562)
6 TIGR01525 ATPase-IB_hvy heavy 100.0 5.2E-91 1.1E-95 827.5 68.2 550 365-981 1-556 (556)
7 TIGR01512 ATPase-IB2_Cd heavy 100.0 1.8E-91 4E-96 825.6 63.2 534 365-983 1-536 (536)
8 TIGR01647 ATPase-IIIA_H plasma 100.0 1.2E-87 2.6E-92 818.8 64.9 543 397-978 55-648 (755)
9 PRK14010 potassium-transportin 100.0 4.2E-85 9E-90 767.9 66.5 498 404-941 72-578 (673)
10 PRK01122 potassium-transportin 100.0 1.2E-84 2.6E-89 764.7 69.0 517 401-955 69-600 (679)
11 PRK10517 magnesium-transportin 100.0 7.9E-84 1.7E-88 793.5 61.9 517 396-945 121-716 (902)
12 TIGR01524 ATPase-IIIB_Mg magne 100.0 4.9E-83 1.1E-87 787.8 66.6 509 400-944 90-680 (867)
13 TIGR01497 kdpB K+-transporting 100.0 5.2E-82 1.1E-86 740.3 67.9 508 396-940 63-582 (675)
14 PRK15122 magnesium-transportin 100.0 1.6E-82 3.4E-87 783.6 64.3 516 396-944 110-715 (903)
15 TIGR01517 ATPase-IIB_Ca plasma 100.0 5.1E-80 1.1E-84 771.0 63.1 563 396-982 127-782 (941)
16 TIGR01522 ATPase-IIA2_Ca golgi 100.0 6.1E-80 1.3E-84 765.7 61.5 539 407-983 89-732 (884)
17 KOG0202 Ca2+ transporting ATPa 100.0 8.2E-80 1.8E-84 692.3 42.5 561 402-983 82-792 (972)
18 KOG0204 Calcium transporting A 100.0 2.7E-79 5.8E-84 686.8 38.7 603 348-984 143-854 (1034)
19 COG0474 MgtA Cation transport 100.0 1.5E-77 3.3E-82 740.4 46.4 546 407-984 112-755 (917)
20 TIGR01106 ATPase-IIC_X-K sodiu 100.0 9.3E-76 2E-80 734.1 62.2 550 397-982 103-797 (997)
21 TIGR01523 ATPase-IID_K-Na pota 100.0 6.4E-75 1.4E-79 723.3 66.4 561 400-982 83-864 (1053)
22 TIGR01494 ATPase_P-type ATPase 100.0 7.8E-76 1.7E-80 691.8 54.6 476 405-948 3-483 (499)
23 TIGR01116 ATPase-IIA1_Ca sarco 100.0 3.1E-74 6.7E-79 716.0 64.3 571 396-982 35-743 (917)
24 TIGR01657 P-ATPase-V P-type AT 100.0 1.5E-72 3.2E-77 710.0 58.6 561 396-984 191-912 (1054)
25 KOG0203 Na+/K+ ATPase, alpha s 100.0 8.3E-68 1.8E-72 593.6 16.2 527 398-944 126-784 (1019)
26 KOG0208 Cation transport ATPas 100.0 5.1E-62 1.1E-66 555.3 44.8 545 374-946 195-930 (1140)
27 KOG0205 Plasma membrane H+-tra 100.0 2.1E-63 4.6E-68 541.3 31.1 511 392-940 92-658 (942)
28 COG2216 KdpB High-affinity K+ 100.0 7.2E-62 1.6E-66 518.8 41.0 491 402-926 70-569 (681)
29 TIGR01652 ATPase-Plipid phosph 100.0 2.4E-60 5.3E-65 601.4 49.8 567 395-981 51-883 (1057)
30 PLN03190 aminophospholipid tra 100.0 6.8E-54 1.5E-58 535.6 55.5 583 376-978 115-987 (1178)
31 KOG0209 P-type ATPase [Inorgan 100.0 3E-51 6.5E-56 456.7 27.5 476 395-896 214-836 (1160)
32 KOG0210 P-type ATPase [Inorgan 100.0 4.9E-45 1.1E-49 399.8 38.5 507 395-934 129-849 (1051)
33 KOG0206 P-type ATPase [General 100.0 1E-40 2.2E-45 401.9 29.5 568 376-962 60-889 (1151)
34 PF00122 E1-E2_ATPase: E1-E2 A 100.0 6.7E-34 1.4E-38 302.2 22.7 223 403-643 1-230 (230)
35 PF00702 Hydrolase: haloacid d 99.9 7.3E-28 1.6E-32 253.5 12.7 209 647-886 1-215 (215)
36 COG4087 Soluble P-type ATPase 99.6 5.7E-15 1.2E-19 131.4 12.8 124 791-917 17-145 (152)
37 KOG0207 Cation transport ATPas 99.5 5E-14 1.1E-18 163.8 14.3 146 46-196 69-214 (951)
38 PRK10671 copA copper exporting 99.5 1.2E-10 2.6E-15 146.0 36.6 128 129-264 4-158 (834)
39 COG2608 CopZ Copper chaperone 99.2 9E-11 1.9E-15 98.3 8.8 69 45-113 1-69 (71)
40 PF00403 HMA: Heavy-metal-asso 99.2 1E-10 2.2E-15 95.9 8.7 62 49-110 1-62 (62)
41 PF00403 HMA: Heavy-metal-asso 99.2 7.9E-11 1.7E-15 96.6 7.8 62 131-192 1-62 (62)
42 COG1778 Low specificity phosph 99.2 1.3E-10 2.9E-15 108.0 9.7 115 812-928 43-165 (170)
43 PRK11133 serB phosphoserine ph 99.1 5.7E-10 1.2E-14 122.7 12.3 115 804-919 181-316 (322)
44 TIGR02137 HSK-PSP phosphoserin 99.1 4.5E-10 9.7E-15 115.7 10.7 116 804-921 68-198 (203)
45 TIGR01670 YrbI-phosphatas 3-de 99.0 1.4E-09 3.1E-14 107.1 11.9 97 812-910 36-136 (154)
46 COG2608 CopZ Copper chaperone 99.0 6.8E-10 1.5E-14 93.0 8.0 67 129-195 3-69 (71)
47 PRK10513 sugar phosphate phosp 99.0 2.5E-09 5.5E-14 116.6 13.3 132 785-919 4-265 (270)
48 PRK01158 phosphoglycolate phos 99.0 3.1E-09 6.8E-14 112.9 13.3 132 785-919 4-226 (230)
49 COG0561 Cof Predicted hydrolas 99.0 4.1E-09 8.8E-14 114.5 12.5 133 785-920 4-259 (264)
50 TIGR01487 SPP-like sucrose-pho 99.0 3.2E-09 6.9E-14 111.5 11.1 130 785-917 2-214 (215)
51 PRK10976 putative hydrolase; P 99.0 5.4E-09 1.2E-13 113.7 13.1 132 785-919 3-261 (266)
52 TIGR02726 phenyl_P_delta pheny 98.9 2.8E-09 6E-14 105.8 9.6 100 811-912 41-144 (169)
53 PRK15126 thiamin pyrimidine py 98.9 4.3E-09 9.4E-14 114.8 12.0 132 785-919 3-259 (272)
54 PRK09484 3-deoxy-D-manno-octul 98.9 8.9E-09 1.9E-13 104.7 11.9 139 782-922 19-172 (183)
55 TIGR00338 serB phosphoserine p 98.9 6.3E-09 1.4E-13 109.6 10.5 113 804-917 85-218 (219)
56 TIGR01482 SPP-subfamily Sucros 98.8 1.6E-08 3.5E-13 107.0 11.6 128 789-919 3-222 (225)
57 PRK10530 pyridoxal phosphate ( 98.8 4.3E-08 9.4E-13 107.0 14.4 132 785-919 4-268 (272)
58 PLN02887 hydrolase family prot 98.8 3.6E-08 7.7E-13 116.1 12.9 52 868-919 525-576 (580)
59 COG0560 SerB Phosphoserine pho 98.8 2.6E-08 5.7E-13 103.1 10.1 103 803-906 76-199 (212)
60 PF08282 Hydrolase_3: haloacid 98.8 2.7E-08 5.8E-13 107.2 10.4 117 802-918 13-254 (254)
61 PRK13582 thrH phosphoserine ph 98.7 5.4E-08 1.2E-12 101.4 10.7 113 804-919 68-196 (205)
62 TIGR00099 Cof-subfamily Cof su 98.7 1.1E-07 2.5E-12 102.6 11.1 128 787-917 2-255 (256)
63 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.6 2.6E-07 5.7E-12 95.8 10.3 100 804-903 80-200 (201)
64 COG0546 Gph Predicted phosphat 98.5 4.1E-07 9E-12 95.6 10.1 116 802-919 87-218 (220)
65 PLN02954 phosphoserine phospha 98.5 9.9E-07 2.2E-11 93.3 13.0 112 804-917 84-222 (224)
66 KOG1615 Phosphoserine phosphat 98.5 1.9E-07 4.2E-12 90.1 6.3 90 803-892 87-199 (227)
67 PRK03669 mannosyl-3-phosphogly 98.5 1.3E-06 2.8E-11 95.2 13.1 59 783-844 6-64 (271)
68 PRK00192 mannosyl-3-phosphogly 98.4 1.7E-06 3.7E-11 94.4 13.0 58 784-844 4-61 (273)
69 TIGR03333 salvage_mtnX 2-hydro 98.4 3E-06 6.4E-11 88.8 12.0 117 803-919 69-209 (214)
70 TIGR01454 AHBA_synth_RP 3-amin 98.3 2.1E-06 4.5E-11 89.4 10.5 114 803-918 74-203 (205)
71 TIGR01486 HAD-SF-IIB-MPGP mann 98.3 3.2E-06 7E-11 91.2 11.9 53 867-919 195-253 (256)
72 TIGR02471 sucr_syn_bact_C sucr 98.3 3.8E-06 8.3E-11 89.5 11.2 67 854-920 159-233 (236)
73 PRK09552 mtnX 2-hydroxy-3-keto 98.3 3.3E-06 7.2E-11 88.8 10.3 113 804-919 74-213 (219)
74 PRK13222 phosphoglycolate phos 98.3 3.9E-06 8.4E-11 88.9 10.2 118 802-921 91-224 (226)
75 TIGR01489 DKMTPPase-SF 2,3-dik 98.3 2.9E-06 6.3E-11 86.9 8.9 88 803-890 71-186 (188)
76 PRK13288 pyrophosphatase PpaX; 98.2 6.2E-06 1.3E-10 86.5 10.4 113 804-918 82-210 (214)
77 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.2 5.3E-06 1.2E-10 86.1 9.5 92 802-893 85-198 (202)
78 TIGR01488 HAD-SF-IB Haloacid D 98.2 2.8E-06 6E-11 86.1 6.7 82 804-885 73-177 (177)
79 PF12710 HAD: haloacid dehalog 98.1 6.7E-06 1.4E-10 84.6 8.3 77 807-883 92-192 (192)
80 TIGR01485 SPP_plant-cyano sucr 98.1 2.6E-05 5.6E-10 83.9 12.0 133 787-919 4-244 (249)
81 PRK06769 hypothetical protein; 98.1 8.3E-06 1.8E-10 82.1 7.5 133 783-917 3-170 (173)
82 PRK08238 hypothetical protein; 98.1 6.2E-05 1.3E-09 87.5 15.6 118 804-922 72-199 (479)
83 PRK13225 phosphoglycolate phos 98.1 2.4E-05 5.1E-10 84.8 11.3 113 804-918 142-267 (273)
84 PRK10187 trehalose-6-phosphate 98.1 2.5E-05 5.4E-10 84.4 11.4 131 784-920 14-242 (266)
85 TIGR01449 PGP_bact 2-phosphogl 98.1 1.1E-05 2.3E-10 84.6 8.3 111 804-916 85-211 (213)
86 PRK13223 phosphoglycolate phos 98.0 2E-05 4.2E-10 85.7 10.2 116 802-919 99-230 (272)
87 PRK13226 phosphoglycolate phos 98.0 2.5E-05 5.3E-10 82.8 9.6 114 804-919 95-225 (229)
88 COG2217 ZntA Cation transport 98.0 1.6E-05 3.4E-10 95.7 8.0 67 46-113 2-69 (713)
89 PRK10826 2-deoxyglucose-6-phos 97.9 2.2E-05 4.9E-10 82.8 8.4 112 803-916 91-217 (222)
90 TIGR01422 phosphonatase phosph 97.9 3.7E-05 8.1E-10 82.9 9.6 113 804-918 99-252 (253)
91 PRK11033 zntA zinc/cadmium/mer 97.8 0.011 2.3E-07 73.5 30.2 67 127-195 52-118 (741)
92 PLN02770 haloacid dehalogenase 97.8 7E-05 1.5E-09 80.3 9.6 108 804-913 108-230 (248)
93 PRK06698 bifunctional 5'-methy 97.8 7E-05 1.5E-09 88.0 10.1 116 804-921 330-456 (459)
94 PLN02382 probable sucrose-phos 97.8 0.00021 4.5E-09 82.0 12.6 130 787-919 12-257 (413)
95 PRK13478 phosphonoacetaldehyde 97.7 0.00014 3E-09 79.0 10.5 114 804-919 101-255 (267)
96 PLN03243 haloacid dehalogenase 97.7 0.00011 2.5E-09 78.9 9.5 110 804-915 109-231 (260)
97 cd01427 HAD_like Haloacid deha 97.7 8.8E-05 1.9E-09 71.0 7.7 90 801-890 21-138 (139)
98 PRK12702 mannosyl-3-phosphogly 97.7 0.00037 7.9E-09 74.1 12.4 57 785-844 2-58 (302)
99 TIGR03351 PhnX-like phosphonat 97.7 0.00015 3.3E-09 76.3 8.9 114 803-918 86-219 (220)
100 TIGR01672 AphA HAD superfamily 97.6 0.00017 3.6E-09 75.8 8.9 88 804-892 114-213 (237)
101 TIGR01544 HAD-SF-IE haloacid d 97.6 0.00059 1.3E-08 72.8 12.5 116 803-918 120-273 (277)
102 TIGR00003 copper ion binding p 97.6 0.00037 8E-09 56.4 8.7 67 45-111 1-67 (68)
103 TIGR01662 HAD-SF-IIIA HAD-supe 97.6 0.00041 8.8E-09 66.5 10.0 103 786-888 2-126 (132)
104 PLN02575 haloacid dehalogenase 97.6 0.00022 4.8E-09 79.7 9.1 110 803-914 215-337 (381)
105 TIGR01668 YqeG_hyp_ppase HAD s 97.5 0.00037 8E-09 70.0 9.5 108 779-888 20-131 (170)
106 PRK14502 bifunctional mannosyl 97.5 0.00043 9.4E-09 81.8 10.5 58 783-843 415-472 (694)
107 PRK14501 putative bifunctional 97.5 0.00095 2.1E-08 83.0 13.9 142 772-919 480-721 (726)
108 PTZ00174 phosphomannomutase; P 97.5 0.00079 1.7E-08 72.2 11.5 53 784-839 5-57 (247)
109 COG2179 Predicted hydrolase of 97.5 0.00086 1.9E-08 64.2 10.0 110 776-887 20-132 (175)
110 TIGR02253 CTE7 HAD superfamily 97.5 0.0003 6.5E-09 74.1 7.9 89 804-892 94-195 (221)
111 PRK11009 aphA acid phosphatase 97.4 0.00038 8.2E-09 73.1 8.3 86 803-892 113-213 (237)
112 TIGR02461 osmo_MPG_phos mannos 97.4 0.00087 1.9E-08 70.6 10.9 53 788-844 3-55 (225)
113 PRK11590 hypothetical protein; 97.4 0.00081 1.8E-08 70.2 10.6 91 804-894 95-204 (211)
114 PRK08942 D,D-heptose 1,7-bisph 97.4 0.00079 1.7E-08 68.5 9.8 114 804-919 29-177 (181)
115 TIGR01548 HAD-SF-IA-hyp1 haloa 97.4 0.00032 7E-09 72.4 6.5 84 802-885 104-197 (197)
116 TIGR01545 YfhB_g-proteo haloac 97.3 0.001 2.2E-08 69.2 10.0 90 804-893 94-202 (210)
117 PRK14988 GMP/IMP nucleotidase; 97.3 0.00031 6.8E-09 74.0 6.2 86 803-888 92-188 (224)
118 PRK11587 putative phosphatase; 97.3 0.00087 1.9E-08 70.4 9.2 109 804-914 83-203 (218)
119 TIGR01484 HAD-SF-IIB HAD-super 97.3 0.00085 1.8E-08 69.7 8.8 54 787-843 2-56 (204)
120 PLN02779 haloacid dehalogenase 97.3 0.00059 1.3E-08 74.7 7.7 109 804-914 144-268 (286)
121 TIGR00003 copper ion binding p 97.2 0.0013 2.8E-08 53.1 7.7 64 130-193 4-67 (68)
122 PHA02530 pseT polynucleotide k 97.2 0.00067 1.5E-08 75.2 7.6 88 801-888 184-291 (300)
123 PRK09449 dUMP phosphatase; Pro 97.2 0.00085 1.8E-08 70.8 7.9 112 804-918 95-222 (224)
124 TIGR02254 YjjG/YfnB HAD superf 97.2 0.00066 1.4E-08 71.6 7.0 111 804-917 97-223 (224)
125 PLN02940 riboflavin kinase 97.2 0.00062 1.3E-08 77.6 7.0 108 804-913 93-215 (382)
126 TIGR01428 HAD_type_II 2-haloal 97.2 0.00093 2E-08 69.0 7.5 85 804-888 92-187 (198)
127 TIGR01685 MDP-1 magnesium-depe 97.1 0.0012 2.5E-08 66.0 7.4 93 799-891 40-155 (174)
128 PLN02957 copper, zinc superoxi 97.1 0.0022 4.8E-08 67.8 9.0 67 46-116 6-72 (238)
129 COG4359 Uncharacterized conser 97.0 0.0014 3E-08 63.3 6.3 88 804-891 73-184 (220)
130 TIGR02009 PGMB-YQAB-SF beta-ph 97.0 0.00082 1.8E-08 68.5 5.1 84 803-888 87-181 (185)
131 PLN02580 trehalose-phosphatase 97.0 0.007 1.5E-07 67.8 12.7 60 777-837 112-173 (384)
132 PLN02811 hydrolase 97.0 0.00088 1.9E-08 70.5 5.3 86 803-888 77-179 (220)
133 TIGR00213 GmhB_yaeD D,D-heptos 97.0 0.0022 4.8E-08 64.8 7.9 109 805-915 27-175 (176)
134 KOG4383 Uncharacterized conser 97.0 0.0077 1.7E-07 68.8 12.6 147 794-940 816-1098(1354)
135 KOG4656 Copper chaperone for s 96.9 0.0026 5.7E-08 62.1 7.5 64 46-113 7-70 (247)
136 PLN02957 copper, zinc superoxi 96.9 0.0031 6.6E-08 66.7 8.7 67 128-198 6-72 (238)
137 TIGR01990 bPGM beta-phosphoglu 96.9 0.0012 2.6E-08 67.3 5.5 84 803-888 86-180 (185)
138 TIGR01664 DNA-3'-Pase DNA 3'-p 96.8 0.0069 1.5E-07 60.4 9.8 106 784-889 13-158 (166)
139 TIGR01509 HAD-SF-IA-v3 haloaci 96.8 0.0025 5.3E-08 64.8 6.6 84 804-888 85-179 (183)
140 TIGR01686 FkbH FkbH-like domai 96.8 0.0037 8E-08 69.7 8.5 107 785-891 4-128 (320)
141 KOG4656 Copper chaperone for s 96.8 0.0031 6.7E-08 61.7 6.6 63 129-195 8-70 (247)
142 TIGR01656 Histidinol-ppas hist 96.8 0.002 4.4E-08 63.0 5.6 85 804-888 27-140 (147)
143 COG4030 Uncharacterized protei 96.7 0.0036 7.8E-08 62.4 6.7 116 804-920 83-263 (315)
144 TIGR00685 T6PP trehalose-phosp 96.7 0.0073 1.6E-07 64.6 9.3 62 854-919 167-240 (244)
145 TIGR01681 HAD-SF-IIIC HAD-supe 96.7 0.0047 1E-07 58.7 7.0 80 804-883 29-125 (128)
146 TIGR02252 DREG-2 REG-2-like, H 96.6 0.003 6.5E-08 65.5 6.1 84 804-888 105-200 (203)
147 PF13419 HAD_2: Haloacid dehal 96.6 0.0012 2.7E-08 66.2 2.9 87 802-888 75-172 (176)
148 PLN03017 trehalose-phosphatase 96.6 0.03 6.5E-07 62.2 13.5 58 780-838 107-166 (366)
149 KOG1603 Copper chaperone [Inor 96.6 0.0091 2E-07 50.4 7.3 56 50-108 8-63 (73)
150 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.6 0.016 3.5E-07 61.9 11.1 100 784-887 8-116 (242)
151 TIGR01549 HAD-SF-IA-v1 haloaci 96.5 0.0046 1E-07 60.9 6.4 81 804-886 64-154 (154)
152 KOG1603 Copper chaperone [Inor 96.5 0.0044 9.5E-08 52.3 5.2 52 136-190 12-63 (73)
153 PF05116 S6PP: Sucrose-6F-phos 96.5 0.0092 2E-07 63.8 8.6 66 854-919 165-243 (247)
154 PRK05446 imidazole glycerol-ph 96.5 0.0084 1.8E-07 66.8 8.3 86 803-888 29-143 (354)
155 PLN02205 alpha,alpha-trehalose 96.4 0.031 6.7E-07 69.9 13.6 69 772-840 584-653 (854)
156 TIGR01691 enolase-ppase 2,3-di 96.3 0.013 2.9E-07 61.0 8.3 89 801-889 92-192 (220)
157 TIGR01261 hisB_Nterm histidino 96.3 0.0075 1.6E-07 59.7 6.0 86 804-889 29-143 (161)
158 PF06888 Put_Phosphatase: Puta 96.3 0.013 2.8E-07 61.3 7.9 78 803-880 70-183 (234)
159 TIGR02463 MPGP_rel mannosyl-3- 96.1 0.012 2.6E-07 61.9 6.8 60 832-891 151-220 (221)
160 smart00577 CPDc catalytic doma 96.0 0.0066 1.4E-07 59.3 4.3 89 802-891 43-140 (148)
161 COG3769 Predicted hydrolase (H 96.0 0.042 9.2E-07 55.0 9.5 56 785-844 8-63 (274)
162 PF09419 PGP_phosphatase: Mito 96.0 0.032 7E-07 55.0 8.7 106 779-886 36-157 (168)
163 PLN02919 haloacid dehalogenase 96.0 0.017 3.6E-07 74.5 8.5 109 804-914 161-285 (1057)
164 TIGR01533 lipo_e_P4 5'-nucleot 95.8 0.038 8.3E-07 59.1 8.9 81 802-882 116-204 (266)
165 PRK10563 6-phosphogluconate ph 95.7 0.0083 1.8E-07 63.1 3.6 86 803-891 87-184 (221)
166 PRK09456 ?-D-glucose-1-phospha 95.7 0.016 3.5E-07 59.8 5.6 85 804-888 84-180 (199)
167 smart00775 LNS2 LNS2 domain. T 95.7 0.059 1.3E-06 53.1 9.2 87 802-888 25-141 (157)
168 PRK10444 UMP phosphatase; Prov 95.6 0.055 1.2E-06 57.8 9.3 47 797-843 10-59 (248)
169 TIGR02247 HAD-1A3-hyp Epoxide 95.5 0.019 4.1E-07 59.9 5.6 86 803-888 93-191 (211)
170 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.4 0.1 2.2E-06 56.2 10.6 54 787-844 4-64 (257)
171 PRK10725 fructose-1-P/6-phosph 95.0 0.036 7.9E-07 56.5 5.7 82 805-888 89-181 (188)
172 TIGR01993 Pyr-5-nucltdase pyri 95.0 0.044 9.6E-07 55.7 6.0 83 804-889 84-181 (184)
173 PLN02151 trehalose-phosphatase 94.8 0.27 5.8E-06 54.7 11.9 57 781-838 95-153 (354)
174 TIGR01675 plant-AP plant acid 94.7 0.15 3.2E-06 53.2 9.0 79 802-880 118-210 (229)
175 PRK10748 flavin mononucleotide 94.7 0.053 1.2E-06 57.7 6.0 83 804-892 113-207 (238)
176 TIGR01457 HAD-SF-IIA-hyp2 HAD- 94.5 0.2 4.4E-06 53.6 9.8 56 785-844 2-60 (249)
177 COG0637 Predicted phosphatase/ 94.0 0.13 2.7E-06 54.1 7.0 87 802-888 84-181 (221)
178 PHA02597 30.2 hypothetical pro 94.0 0.13 2.8E-06 53.0 6.8 83 804-888 74-169 (197)
179 COG1011 Predicted hydrolase (H 93.8 0.25 5.5E-06 52.0 9.0 114 803-919 98-227 (229)
180 KOG3120 Predicted haloacid deh 93.5 0.22 4.8E-06 50.2 7.0 89 803-891 83-208 (256)
181 PF13344 Hydrolase_6: Haloacid 93.2 0.059 1.3E-06 48.7 2.4 82 799-886 9-99 (101)
182 PLN02645 phosphoglycolate phos 92.9 0.13 2.8E-06 57.2 5.1 103 783-892 27-137 (311)
183 TIGR01684 viral_ppase viral ph 92.0 0.32 6.9E-06 52.2 6.4 61 784-847 126-189 (301)
184 KOG3040 Predicted sugar phosph 91.8 0.44 9.5E-06 47.6 6.5 50 795-844 14-66 (262)
185 TIGR02052 MerP mercuric transp 91.2 1.4 3E-05 38.2 8.8 65 47-111 24-88 (92)
186 PLN02177 glycerol-3-phosphate 90.9 0.48 1E-05 55.7 7.0 145 805-967 111-279 (497)
187 PF00873 ACR_tran: AcrB/AcrD/A 90.8 3.7 8E-05 53.7 15.7 144 47-193 44-214 (1021)
188 TIGR01663 PNK-3'Pase polynucle 90.5 0.91 2E-05 53.6 8.8 101 785-885 169-303 (526)
189 TIGR02052 MerP mercuric transp 90.4 1.4 3E-05 38.2 8.1 65 130-194 25-89 (92)
190 TIGR01493 HAD-SF-IA-v2 Haloaci 89.6 0.23 4.9E-06 49.9 2.5 75 804-885 90-175 (175)
191 TIGR01452 PGP_euk phosphoglyco 89.1 2 4.4E-05 46.9 9.7 100 785-890 3-108 (279)
192 TIGR02244 HAD-IG-Ncltidse HAD 88.4 1.1 2.3E-05 50.0 6.8 37 806-842 186-223 (343)
193 PHA03398 viral phosphatase sup 88.4 1 2.2E-05 48.5 6.4 60 785-847 129-191 (303)
194 KOG3085 Predicted hydrolase (H 88.4 1.1 2.3E-05 46.9 6.5 97 805-902 114-223 (237)
195 TIGR02251 HIF-SF_euk Dullard-l 88.2 0.57 1.2E-05 46.4 4.3 88 801-889 39-135 (162)
196 PF03767 Acid_phosphat_B: HAD 86.9 0.64 1.4E-05 49.0 3.9 78 804-881 115-207 (229)
197 KOG4383 Uncharacterized conser 86.3 12 0.00026 44.0 13.5 37 444-483 162-198 (1354)
198 COG3700 AphA Acid phosphatase 85.5 1.4 3.1E-05 42.8 5.0 86 805-891 115-210 (237)
199 TIGR01680 Veg_Stor_Prot vegeta 85.0 5.4 0.00012 42.6 9.5 79 802-880 143-236 (275)
200 PF12689 Acid_PPase: Acid Phos 85.0 3.2 6.8E-05 41.3 7.4 79 805-883 46-141 (169)
201 PTZ00445 p36-lilke protein; Pr 84.8 2.6 5.6E-05 43.0 6.7 117 771-887 30-199 (219)
202 COG0841 AcrB Cation/multidrug 84.7 1.4E+02 0.003 38.8 25.8 143 49-192 47-212 (1009)
203 COG1877 OtsB Trehalose-6-phosp 84.1 11 0.00024 40.4 11.5 66 778-843 12-80 (266)
204 PF02358 Trehalose_PPase: Treh 83.9 2.3 5E-05 45.0 6.5 55 789-843 2-59 (235)
205 TIGR01452 PGP_euk phosphoglyco 82.4 5 0.00011 43.8 8.5 87 805-892 144-249 (279)
206 TIGR02463 MPGP_rel mannosyl-3- 82.4 2.1 4.6E-05 44.7 5.5 53 788-844 3-56 (221)
207 COG0647 NagD Predicted sugar p 80.9 9.5 0.00021 41.0 9.6 105 796-910 16-130 (269)
208 PF08235 LNS2: LNS2 (Lipin/Ned 80.1 7.7 0.00017 37.9 7.8 87 802-888 25-141 (157)
209 PRK14054 methionine sulfoxide 79.8 2.8 6E-05 41.7 4.8 47 140-186 10-75 (172)
210 cd00371 HMA Heavy-metal-associ 77.8 14 0.0003 26.6 7.5 58 51-109 3-60 (63)
211 cd00371 HMA Heavy-metal-associ 77.1 12 0.00026 27.0 7.0 58 133-191 3-60 (63)
212 COG0241 HisB Histidinol phosph 77.0 9.4 0.0002 38.3 7.6 84 805-888 32-144 (181)
213 PF13242 Hydrolase_like: HAD-h 76.3 2.2 4.9E-05 36.0 2.7 54 858-913 13-74 (75)
214 PRK09577 multidrug efflux prot 74.9 1E+02 0.0022 40.4 18.4 145 47-192 44-212 (1032)
215 PRK13748 putative mercuric red 74.0 10 0.00022 46.0 8.6 64 50-114 4-67 (561)
216 PRK10555 aminoglycoside/multid 74.0 1.5E+02 0.0034 38.8 19.7 140 48-189 45-210 (1037)
217 TIGR00915 2A0602 The (Largely 73.9 2E+02 0.0043 37.8 20.7 141 47-189 44-210 (1044)
218 PRK05528 methionine sulfoxide 73.9 5.9 0.00013 38.7 5.1 47 140-186 8-68 (156)
219 PRK15127 multidrug efflux syst 73.7 1.8E+02 0.004 38.2 20.3 140 48-189 45-210 (1049)
220 PRK13748 putative mercuric red 72.7 9.8 0.00021 46.2 8.0 66 131-197 3-68 (561)
221 CHL00200 trpA tryptophan synth 72.1 1E+02 0.0022 33.1 14.6 111 772-894 108-233 (263)
222 PF05822 UMPH-1: Pyrimidine 5' 71.8 19 0.00041 38.0 8.6 115 803-918 89-241 (246)
223 PLN02423 phosphomannomutase 70.8 6.8 0.00015 41.8 5.4 39 854-893 189-232 (245)
224 PLN03063 alpha,alpha-trehalose 70.3 77 0.0017 40.1 15.2 71 772-842 495-571 (797)
225 PRK13014 methionine sulfoxide 70.3 6 0.00013 39.8 4.4 47 140-186 15-80 (186)
226 PRK00058 methionine sulfoxide 69.9 6.5 0.00014 40.3 4.6 47 140-186 52-117 (213)
227 PRK10503 multidrug efflux syst 69.2 1.9E+02 0.0041 38.0 18.9 142 47-189 55-220 (1040)
228 PRK02261 methylaspartate mutas 68.9 28 0.0006 33.4 8.5 85 778-864 26-132 (137)
229 TIGR01460 HAD-SF-IIA Haloacid 68.8 19 0.00041 38.1 8.2 85 797-887 7-101 (236)
230 TIGR01459 HAD-SF-IIA-hyp4 HAD- 67.7 4.5 9.7E-05 43.1 3.2 81 806-888 140-236 (242)
231 COG2177 FtsX Cell division pro 67.3 2E+02 0.0043 31.6 21.6 76 140-233 71-149 (297)
232 KOG2882 p-Nitrophenyl phosphat 66.7 20 0.00044 38.5 7.6 102 784-891 22-130 (306)
233 TIGR01689 EcbF-BcbF capsule bi 65.4 14 0.00031 34.7 5.6 50 786-835 3-55 (126)
234 TIGR01501 MthylAspMutase methy 65.2 42 0.00091 32.0 8.7 71 792-864 52-130 (134)
235 COG2503 Predicted secreted aci 63.9 31 0.00067 35.9 7.9 78 805-882 123-209 (274)
236 PF06506 PrpR_N: Propionate ca 62.3 74 0.0016 31.9 10.6 127 801-930 14-172 (176)
237 PLN02591 tryptophan synthase 62.1 87 0.0019 33.4 11.5 110 772-893 95-219 (250)
238 PRK14054 methionine sulfoxide 61.7 23 0.0005 35.3 6.5 50 58-107 10-78 (172)
239 PF01625 PMSR: Peptide methion 60.2 14 0.0003 36.2 4.7 48 140-187 7-73 (155)
240 PF01206 TusA: Sulfurtransfera 59.8 35 0.00077 28.1 6.5 55 131-195 2-56 (70)
241 COG0225 MsrA Peptide methionin 59.3 14 0.00031 36.3 4.5 47 140-186 13-78 (174)
242 cd02072 Glm_B12_BD B12 binding 59.1 52 0.0011 31.1 8.1 83 779-863 23-127 (128)
243 TIGR01517 ATPase-IIB_Ca plasma 58.6 1.4E+02 0.0031 38.7 14.9 170 450-627 188-360 (941)
244 PRK10614 multidrug efflux syst 58.4 5.5E+02 0.012 33.7 24.4 143 46-189 45-211 (1025)
245 PRK13111 trpA tryptophan synth 58.2 2.6E+02 0.0057 29.9 14.7 97 772-880 106-213 (258)
246 TIGR00401 msrA methionine-S-su 55.1 23 0.0005 34.4 5.2 47 140-186 7-72 (149)
247 cd02071 MM_CoA_mut_B12_BD meth 54.7 41 0.00089 31.4 6.8 60 793-852 51-112 (122)
248 TIGR01456 CECR5 HAD-superfamil 54.5 19 0.0004 40.2 5.2 86 797-888 9-106 (321)
249 TIGR02250 FCP1_euk FCP1-like p 53.0 23 0.00049 34.8 4.9 45 802-847 56-101 (156)
250 COG0078 ArgF Ornithine carbamo 52.7 2.2E+02 0.0049 31.0 12.4 92 777-877 64-164 (310)
251 PRK05550 bifunctional methioni 52.6 20 0.00043 38.7 4.7 48 139-186 133-199 (283)
252 PF00873 ACR_tran: AcrB/AcrD/A 52.4 5E+02 0.011 34.2 18.6 132 58-189 577-742 (1021)
253 COG0841 AcrB Cation/multidrug 52.3 53 0.0011 42.5 9.3 119 143-262 63-208 (1009)
254 TIGR00914 2A0601 heavy metal e 52.2 6.1E+02 0.013 33.5 19.3 126 61-190 66-221 (1051)
255 PLN02645 phosphoglycolate phos 52.0 25 0.00055 38.9 5.7 56 861-918 242-307 (311)
256 PRK09579 multidrug efflux prot 51.7 6.9E+02 0.015 32.8 22.4 140 48-189 47-210 (1017)
257 PRK13014 methionine sulfoxide 50.7 35 0.00075 34.4 5.8 59 42-106 5-82 (186)
258 COG4669 EscJ Type III secretor 50.5 20 0.00043 37.1 4.1 102 154-263 43-174 (246)
259 PRK14010 potassium-transportin 50.4 5.8E+02 0.013 31.6 18.8 68 770-838 444-520 (673)
260 PF00875 DNA_photolyase: DNA p 50.0 94 0.002 30.6 9.0 74 808-881 54-133 (165)
261 PF01206 TusA: Sulfurtransfera 49.5 46 0.001 27.4 5.6 56 49-114 2-57 (70)
262 COG1888 Uncharacterized protei 49.0 96 0.0021 26.9 7.1 70 45-114 5-79 (97)
263 cd04724 Tryptophan_synthase_al 48.5 1.6E+02 0.0034 31.3 10.9 95 773-879 94-199 (242)
264 TIGR01106 ATPase-IIC_X-K sodiu 47.7 3.6E+02 0.0077 35.3 15.9 198 407-624 117-325 (997)
265 PRK11018 hypothetical protein; 47.3 90 0.002 26.5 7.1 57 130-196 9-65 (78)
266 PRK00058 methionine sulfoxide 45.9 58 0.0013 33.6 6.6 58 43-106 43-119 (213)
267 PF11491 DUF3213: Protein of u 45.4 34 0.00074 29.0 3.9 53 142-194 12-64 (88)
268 TIGR00262 trpA tryptophan synt 44.6 1.7E+02 0.0037 31.3 10.4 109 772-893 104-228 (256)
269 COG0225 MsrA Peptide methionin 44.1 75 0.0016 31.5 6.7 59 43-107 4-81 (174)
270 PRK15122 magnesium-transportin 42.9 1.1E+02 0.0024 39.3 10.1 194 404-626 121-352 (903)
271 TIGR00640 acid_CoA_mut_C methy 42.7 78 0.0017 30.1 6.7 66 792-857 53-121 (132)
272 TIGR01524 ATPase-IIIB_Mg magne 42.5 2.4E+02 0.0052 36.3 13.0 109 402-512 96-222 (867)
273 PF15584 Imm44: Immunity prote 42.3 12 0.00027 32.3 1.0 19 461-479 13-31 (94)
274 PRK03692 putative UDP-N-acetyl 42.2 1.4E+02 0.0031 31.6 9.2 118 810-928 95-229 (243)
275 PF02401 LYTB: LytB protein; 41.6 3.4E+02 0.0075 29.5 12.1 102 794-895 155-266 (281)
276 KOG3109 Haloacid dehalogenase- 41.6 1.7E+02 0.0038 30.2 9.0 89 796-887 91-199 (244)
277 PRK10614 multidrug efflux syst 41.2 9.7E+02 0.021 31.5 23.9 130 60-189 578-730 (1025)
278 PRK05528 methionine sulfoxide 41.2 52 0.0011 32.2 5.3 49 58-106 8-70 (156)
279 PRK14194 bifunctional 5,10-met 41.2 97 0.0021 34.0 7.9 53 856-908 144-209 (301)
280 cd03421 SirA_like_N SirA_like_ 40.7 1.1E+02 0.0024 24.9 6.5 54 132-196 2-55 (67)
281 PRK10503 multidrug efflux syst 40.5 1E+03 0.022 31.5 22.1 132 58-189 586-744 (1040)
282 TIGR00216 ispH_lytB (E)-4-hydr 40.5 3.7E+02 0.0079 29.2 12.0 100 796-895 156-265 (280)
283 COG4669 EscJ Type III secretor 39.6 31 0.00068 35.7 3.6 98 55-162 15-130 (246)
284 cd04888 ACT_PheB-BS C-terminal 39.5 1.8E+02 0.0039 23.9 7.9 67 169-235 4-74 (76)
285 PLN03064 alpha,alpha-trehalose 39.4 69 0.0015 40.9 7.3 72 772-843 579-662 (934)
286 PRK10555 aminoglycoside/multid 38.3 1.2E+02 0.0025 40.0 9.4 118 143-261 62-208 (1037)
287 PRK15424 propionate catabolism 38.1 3.6E+02 0.0078 32.4 12.7 70 807-877 94-165 (538)
288 COG1832 Predicted CoA-binding 38.0 1.3E+02 0.0027 28.7 6.9 85 795-881 18-112 (140)
289 PLN02423 phosphomannomutase 37.8 68 0.0015 34.1 6.1 48 786-837 9-56 (245)
290 cd03423 SirA SirA (also known 36.7 1.5E+02 0.0033 24.3 6.8 55 132-196 2-56 (69)
291 COG0474 MgtA Cation transport 36.6 4.1E+02 0.009 34.3 13.8 210 397-627 106-332 (917)
292 cd02067 B12-binding B12 bindin 36.5 1.4E+02 0.0031 27.4 7.4 55 794-848 52-108 (119)
293 cd03422 YedF YedF is a bacteri 36.3 1.4E+02 0.0031 24.6 6.5 55 132-196 2-56 (69)
294 COG4996 Predicted phosphatase 35.5 71 0.0015 29.9 4.8 72 804-875 41-125 (164)
295 cd00291 SirA_YedF_YeeD SirA, Y 34.8 1.6E+02 0.0036 23.8 6.7 55 132-196 2-56 (69)
296 TIGR00288 conserved hypothetic 34.5 4.6E+02 0.01 25.8 13.0 92 772-875 43-138 (160)
297 PF12710 HAD: haloacid dehalog 34.1 20 0.00043 36.1 1.3 13 650-662 1-13 (192)
298 PRK13125 trpA tryptophan synth 34.0 5.9E+02 0.013 26.9 12.9 109 772-893 90-215 (244)
299 PRK14170 bifunctional 5,10-met 33.9 1.4E+02 0.003 32.5 7.5 53 856-908 142-207 (284)
300 PRK15108 biotin synthase; Prov 33.7 4.9E+02 0.011 29.3 12.3 72 807-878 111-199 (345)
301 PRK09577 multidrug efflux prot 33.6 1.4E+02 0.003 39.3 9.0 118 143-261 62-207 (1032)
302 cd03420 SirA_RHOD_Pry_redox Si 33.2 1.8E+02 0.0039 23.9 6.7 55 132-196 2-56 (69)
303 KOG3128 Uncharacterized conser 32.5 3.3E+02 0.0071 28.8 9.5 114 805-918 139-290 (298)
304 COG2177 FtsX Cell division pro 32.5 2E+02 0.0043 31.6 8.6 80 58-160 71-150 (297)
305 TIGR00401 msrA methionine-S-su 32.5 95 0.0021 30.2 5.5 49 58-106 7-74 (149)
306 PRK14018 trifunctional thiored 32.2 2.4E+02 0.0053 33.6 9.8 88 93-186 158-269 (521)
307 COG4004 Uncharacterized protei 31.0 89 0.0019 27.1 4.3 46 178-246 13-58 (96)
308 cd00860 ThrRS_anticodon ThrRS 30.6 1.8E+02 0.0039 24.9 6.7 47 798-844 6-53 (91)
309 PF01625 PMSR: Peptide methion 30.5 1.2E+02 0.0026 29.7 5.9 50 58-107 7-75 (155)
310 PF11491 DUF3213: Protein of u 30.4 54 0.0012 27.9 2.9 52 213-264 9-60 (88)
311 cd04888 ACT_PheB-BS C-terminal 30.3 2.5E+02 0.0054 23.0 7.3 63 95-161 12-74 (76)
312 TIGR01494 ATPase_P-type ATPase 30.3 9.8E+02 0.021 28.3 15.1 151 450-626 56-213 (499)
313 PRK08508 biotin synthase; Prov 30.0 4.8E+02 0.011 28.3 11.3 103 771-878 44-165 (279)
314 KOG1618 Predicted phosphatase 30.0 1.8E+02 0.004 31.7 7.4 83 786-875 35-129 (389)
315 PF02680 DUF211: Uncharacteriz 29.9 1E+02 0.0022 27.3 4.5 68 46-114 5-77 (95)
316 PRK15127 multidrug efflux syst 29.7 1.7E+02 0.0037 38.5 8.9 118 143-261 62-208 (1049)
317 TIGR01647 ATPase-IIIA_H plasma 29.1 2.4E+02 0.0053 35.5 9.9 34 594-627 237-270 (755)
318 PRK14189 bifunctional 5,10-met 29.1 2.2E+02 0.0047 31.0 8.1 53 856-908 143-208 (285)
319 TIGR00915 2A0602 The (Largely 28.8 1.5E+02 0.0034 38.8 8.3 119 143-262 62-209 (1044)
320 KOG1635 Peptide methionine sul 28.7 82 0.0018 30.9 4.2 48 140-187 31-97 (191)
321 cd04726 KGPDC_HPS 3-Keto-L-gul 28.7 4.6E+02 0.0099 26.6 10.4 86 807-893 90-187 (202)
322 cd01994 Alpha_ANH_like_IV This 28.5 2.9E+02 0.0063 28.2 8.6 50 830-879 46-101 (194)
323 KOG2914 Predicted haloacid-hal 28.5 1.4E+02 0.003 31.2 6.3 86 804-889 92-192 (222)
324 cd00532 MGS-like MGS-like doma 28.5 3.4E+02 0.0073 24.8 8.3 75 798-877 3-80 (112)
325 PF04312 DUF460: Protein of un 27.6 3.9E+02 0.0084 25.5 8.3 70 791-863 50-123 (138)
326 PRK10929 putative mechanosensi 27.6 9.9E+02 0.021 31.5 14.7 20 653-672 946-965 (1109)
327 PRK14188 bifunctional 5,10-met 27.3 1.8E+02 0.0038 31.9 7.1 53 856-908 143-208 (296)
328 TIGR02329 propionate_PrpR prop 27.2 6.6E+02 0.014 30.1 12.5 70 807-877 84-155 (526)
329 TIGR02765 crypto_DASH cryptoch 27.1 2.2E+02 0.0048 33.1 8.5 62 807-868 61-127 (429)
330 PRK14191 bifunctional 5,10-met 26.9 2.1E+02 0.0045 31.1 7.5 52 857-908 143-207 (285)
331 KOG1250 Threonine/serine dehyd 26.2 1.4E+02 0.003 33.7 6.0 91 783-881 79-175 (457)
332 PRK11018 hypothetical protein; 26.2 1.7E+02 0.0037 24.8 5.5 56 48-113 9-64 (78)
333 PF13380 CoA_binding_2: CoA bi 26.0 87 0.0019 29.0 3.9 40 805-844 64-104 (116)
334 PLN02389 biotin synthase 25.9 4.2E+02 0.0091 30.2 10.2 103 770-877 119-240 (379)
335 TIGR00914 2A0601 heavy metal e 25.7 1.6E+03 0.036 29.5 24.6 130 60-189 589-753 (1051)
336 TIGR00739 yajC preprotein tran 25.4 3.4E+02 0.0074 23.5 7.1 18 419-436 24-42 (84)
337 COG0731 Fe-S oxidoreductases [ 25.2 3.6E+02 0.0077 29.5 8.8 76 802-880 90-189 (296)
338 PRK09479 glpX fructose 1,6-bis 25.2 2.7E+02 0.0059 30.4 7.8 83 794-902 130-221 (319)
339 PRK11152 ilvM acetolactate syn 25.2 2.7E+02 0.0058 23.7 6.3 69 87-161 7-75 (76)
340 TIGR03556 photolyase_8HDF deox 25.2 2.5E+02 0.0055 33.1 8.6 63 807-869 55-122 (471)
341 TIGR00696 wecB_tagA_cpsF bacte 25.0 2.9E+02 0.0062 27.8 7.7 116 810-926 38-170 (177)
342 PRK01122 potassium-transportin 25.0 1.4E+03 0.03 28.4 16.4 70 769-839 447-525 (679)
343 PF00763 THF_DHG_CYH: Tetrahyd 24.8 3E+02 0.0066 25.4 7.3 64 803-866 10-86 (117)
344 COG1888 Uncharacterized protei 24.6 3.5E+02 0.0076 23.6 6.7 52 145-196 23-79 (97)
345 PRK00856 pyrB aspartate carbam 24.5 4.9E+02 0.011 28.7 10.0 127 776-909 64-221 (305)
346 COG3981 Predicted acetyltransf 24.5 3.6E+02 0.0078 26.8 7.8 57 787-843 72-155 (174)
347 PRK10481 hypothetical protein; 24.3 8.4E+02 0.018 25.5 11.1 111 748-867 63-183 (224)
348 COG1171 IlvA Threonine dehydra 24.3 1.8E+02 0.004 32.5 6.6 55 827-884 82-138 (347)
349 cd05017 SIS_PGI_PMI_1 The memb 24.2 1.7E+02 0.0038 26.9 5.7 40 806-847 56-95 (119)
350 PRK09479 glpX fructose 1,6-bis 23.7 1.6E+02 0.0034 32.2 5.7 78 807-884 167-283 (319)
351 COG0415 PhrB Deoxyribodipyrimi 23.7 2.7E+02 0.0059 32.5 8.1 64 808-871 56-124 (461)
352 PRK14179 bifunctional 5,10-met 23.7 2.9E+02 0.0064 30.0 7.9 52 857-908 144-208 (284)
353 COG0309 HypE Hydrogenase matur 23.6 3.2E+02 0.0069 30.3 8.1 77 798-874 219-307 (339)
354 TIGR03679 arCOG00187 arCOG0018 23.6 5E+02 0.011 27.0 9.5 71 809-879 10-99 (218)
355 TIGR02370 pyl_corrinoid methyl 23.2 1.5E+02 0.0032 30.3 5.4 67 779-847 108-191 (197)
356 TIGR03679 arCOG00187 arCOG0018 22.8 3.7E+02 0.008 28.0 8.4 64 807-872 73-141 (218)
357 PTZ00314 inosine-5'-monophosph 22.7 8.4E+02 0.018 29.0 12.2 113 772-887 180-304 (495)
358 cd01516 FBPase_glpX Bacterial 22.1 1.8E+02 0.0039 31.6 5.7 78 807-884 164-280 (309)
359 COG0647 NagD Predicted sugar p 21.7 1.4E+02 0.003 32.3 4.9 70 802-891 163-233 (269)
360 PF05152 DUF705: Protein of un 21.6 2.5E+02 0.0055 30.3 6.6 66 785-850 123-188 (297)
361 KOG2961 Predicted hydrolase (H 21.5 3E+02 0.0066 26.7 6.4 83 800-882 57-156 (190)
362 cd06279 PBP1_LacI_like_3 Ligan 21.5 5.5E+02 0.012 27.4 9.9 38 811-848 47-85 (283)
363 COG4229 Predicted enolase-phos 21.3 1.8E+02 0.0038 29.1 5.0 85 801-886 100-197 (229)
364 PF03129 HGTP_anticodon: Antic 21.2 2.6E+02 0.0056 24.3 5.9 48 797-844 3-54 (94)
365 PRK12415 fructose 1,6-bisphosp 21.1 1.9E+02 0.0042 31.7 5.8 79 807-885 165-282 (322)
366 cd03420 SirA_RHOD_Pry_redox Si 21.1 1.7E+02 0.0038 24.0 4.4 55 50-114 2-56 (69)
367 cd04236 AAK_NAGS-Urea AAK_NAGS 21.0 3.7E+02 0.0079 29.1 8.0 101 760-867 8-112 (271)
368 COG5012 Predicted cobalamin bi 21.0 82 0.0018 32.6 2.8 56 794-849 157-213 (227)
369 PRK11026 ftsX cell division AB 20.8 4E+02 0.0087 29.4 8.5 80 140-234 78-162 (309)
370 PRK14184 bifunctional 5,10-met 20.7 4.2E+02 0.0091 28.9 8.3 52 857-908 143-211 (286)
371 cd03421 SirA_like_N SirA_like_ 20.7 1.8E+02 0.0038 23.7 4.4 52 50-112 2-53 (67)
372 PF07287 DUF1446: Protein of u 20.6 3.5E+02 0.0076 30.6 8.0 105 804-909 55-168 (362)
373 PF00072 Response_reg: Respons 20.6 4.5E+02 0.0097 23.0 7.7 54 807-862 56-111 (112)
374 cd04877 ACT_TyrR N-terminal AC 20.5 4.3E+02 0.0093 21.8 6.8 65 169-234 4-68 (74)
375 cd03422 YedF YedF is a bacteri 20.3 1.6E+02 0.0036 24.2 4.1 55 50-114 2-56 (69)
376 PHA02669 hypothetical protein; 20.1 2.4E+02 0.0052 27.2 5.5 32 400-431 17-49 (210)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-155 Score=1320.05 Aligned_cols=903 Identities=50% Similarity=0.778 Sum_probs=831.1
Q ss_pred CCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchhccccCCCCCCCCcceeeee
Q 001896 53 TGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQY 132 (998)
Q Consensus 53 ~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~l 132 (998)
.||+|..|.+.++++++..+|+.++.+++.++++.+.|+ ...+++.+.+.+++.||++...+++.... .+..+
T Consensus 1 ~gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~-~~~~~~~i~~~ied~gf~~~~~~~~~~~~------~~~~l 73 (951)
T KOG0207|consen 1 KGMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYD-NIVSPESIKETIEDMGFEASLLSDSEITA------SKCYL 73 (951)
T ss_pred CCccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEe-eccCHHHHHHHhhcccceeeecccCcccc------ceeEE
Confidence 499999999999999999999999999999999999999 88999999999999999998876654322 25689
Q ss_pred eeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccCC---ccceeeeec
Q 001896 133 TIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSG---QDKILLQVT 209 (998)
Q Consensus 133 ~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~~~~~---~~~~~~~v~ 209 (998)
++.||+|.+|...+|+.+++.+||.++.+.+..+++++.|||..++...+.+.+++.||.+.+.++.. ..++.|.+.
T Consensus 74 ~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~~~~~i~L~v~ 153 (951)
T KOG0207|consen 74 SVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGNSNQKIYLDVL 153 (951)
T ss_pred EecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCCCCCcEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999876532 257899999
Q ss_pred CccchhhhhHHHhhhhcCCCceeEEeecCCCeEEEEecCCCCCcccccccccccCCCcccccccCccc---cccccchHH
Q 001896 210 GVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMNPFA---RMTSRDSEE 286 (998)
Q Consensus 210 gm~c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~y~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~---~~~~~~~~~ 286 (998)
||.|.+|+..||+.+.+++||.+++++..++++.|.|||..++++++.+.+|..+ +.+.+..... ....+...+
T Consensus 154 g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~---~~~~~~~~~~~~~~~~l~~~~e 230 (951)
T KOG0207|consen 154 GMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETG---FEASVRPYGDTTFKNSLKHKEE 230 (951)
T ss_pred cccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhc---ccceeeeccccchhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999988 4333322111 112234567
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhcCchhhHHHHhhhccCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCChh
Q 001896 287 TSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRNGSTNMD 366 (998)
Q Consensus 287 ~~~~~~~~~~al~l~l~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~l~~~~~~md 366 (998)
.+.|++.|++++.+++|++++.+.+++.......+.....++++..++.++|+++++|..||+||..||++|++|+.|||
T Consensus 231 i~~w~~~fl~s~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~vqf~~G~~fy~~A~ksL~~g~~nMd 310 (951)
T KOG0207|consen 231 IRKWKRPFLISLGFSLPVSFAMIICPPLAWILALLVPFLPGLSYGNSLSFVLATPVQFVGGRPFYLAAYKSLKRGSANMD 310 (951)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhccchhhhhhhccccccchhhhHHHhhhheeeEEecceeeHHHHHHHHhcCCCCce
Confidence 89999999999999999999888877654422222222556889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCC
Q 001896 367 VLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVG 446 (998)
Q Consensus 367 ~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g 446 (998)
+|+++++.+||+||+++++....... +..||+++.|++.|+++|+|+|..++.|+...+.+|.++.|.++.++ .+|
T Consensus 311 vLv~L~t~aay~~S~~~~~~~~~~~~-~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii---~~g 386 (951)
T KOG0207|consen 311 VLVVLGTTAAYFYSIFSLLAAVVFDS-PPTFFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKATII---EDG 386 (951)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHccC-cchhccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccceEe---ecC
Confidence 99999999999999998887666533 78999999999999999999999999999999999999999999998 666
Q ss_pred cceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEecceeeecccccCcCcccccCCCCceecceeeeeceEEEEEEEecC
Q 001896 447 KCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGS 526 (998)
Q Consensus 447 ~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~ 526 (998)
+ ++++||.+.|++||+|.|.||++||+||+|++|++.||||.+|||++||.|++|+.|.+||+|.+|.+.++++++|.
T Consensus 387 ~--~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss~VDEs~iTGEs~PV~Kk~gs~ViaGsiN~nG~l~VkaT~~g~ 464 (951)
T KOG0207|consen 387 S--EEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSSEVDESLITGESMPVPKKKGSTVIAGSINLNGTLLVKATKVGG 464 (951)
T ss_pred C--cceEeeeeeeccCCEEEECCCCccccccEEEeCceeechhhccCCceecccCCCCeeeeeeecCCceEEEEEEeccc
Confidence 4 37999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-cCCCCCcccCCCCccHHHHHHHHhhhh
Q 001896 527 DAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGV-LGAYPEQWLPENGTHFVFALMFSISVV 605 (998)
Q Consensus 527 ~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~isvl 605 (998)
||.+++|.+++++++.+|+|+|+++|+++.||+|.++++++++|++|.+.+. ...++..|. ..+..++.++++++
T Consensus 465 dttla~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~~g~~~~~~~~~~~----~~~~~a~~~aisVl 540 (951)
T KOG0207|consen 465 DTTLAQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWILIGKIVFKYPRSFF----DAFSHAFQLAISVL 540 (951)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHHHccccccCcchhh----HHHHHHHHhhheEE
Confidence 9999999999999999999999999999999999999999999999999876 334455554 57889999999999
Q ss_pred hhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCC-CCHHHHHHHHH
Q 001896 606 VIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-MDRGEFLTLVA 684 (998)
Q Consensus 606 v~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~-~~~~~~l~~~~ 684 (998)
+++|||+|++|+|++++.|...++++|+++|+++++|.+.++++++||||||||+|++.|.++....+ .+..+++.+++
T Consensus 541 viACPCaLgLATPtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~ 620 (951)
T KOG0207|consen 541 VIACPCALGLATPTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVFDKTGTLTEGKPTVVDFKSLSNPISLKEALALVA 620 (951)
T ss_pred EEECchhhhcCCceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEEcCCCceecceEEEEEEEecCCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877 78999999999
Q ss_pred HhhccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeeecCCe--EEEEEcCeEEEEeeHhhhh
Q 001896 685 SAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRG--IQCFISGKQVLVGNRKLLN 762 (998)
Q Consensus 685 ~~~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g--i~~~~~g~~~~~g~~~~~~ 762 (998)
+.|.+++||+++|+++|++..... .....+.++++.+|.| +.+.++|+.+.+|+++|+.
T Consensus 621 a~Es~SeHPig~AIv~yak~~~~~-------------------~~~~~~~~~~~~pg~g~~~~~~~~~~~i~iGN~~~~~ 681 (951)
T KOG0207|consen 621 AMESGSEHPIGKAIVDYAKEKLVE-------------------PNPEGVLSFEYFPGEGIYVTVTVDGNEVLIGNKEWMS 681 (951)
T ss_pred HHhcCCcCchHHHHHHHHHhcccc-------------------cCccccceeecccCCCcccceEEeeeEEeechHHHHH
Confidence 999999999999999999987310 1112346778888988 6788899999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhC
Q 001896 763 ESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIG 842 (998)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~g 842 (998)
+++...+++.++..++.+..|++++++++|+++.|++.++|++|||+..+|..||++|++++|+|||+..+|+++|+++|
T Consensus 682 r~~~~~~~~i~~~~~~~e~~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VG 761 (951)
T KOG0207|consen 682 RNGCSIPDDILDALTESERKGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVG 761 (951)
T ss_pred hcCCCCchhHHHhhhhHhhcCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHHHHH
Q 001896 843 IQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSR 922 (998)
Q Consensus 843 i~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r 922 (998)
++++++++.|+||.++|+.+|+++..|+|||||+||+|||.+|||||++|.|++.|.++||+++++|++.+++.+++++|
T Consensus 762 i~~V~aev~P~~K~~~Ik~lq~~~~~VaMVGDGINDaPALA~AdVGIaig~gs~vAieaADIVLmrn~L~~v~~ai~LSr 841 (951)
T KOG0207|consen 762 IDNVYAEVLPEQKAEKIKEIQKNGGPVAMVGDGINDAPALAQADVGIAIGAGSDVAIEAADIVLMRNDLRDVPFAIDLSR 841 (951)
T ss_pred cceEEeccCchhhHHHHHHHHhcCCcEEEEeCCCCccHHHHhhccceeeccccHHHHhhCCEEEEccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccHHHHHHHhhhhhHHHhhhcccccccCCCC--ccccccc
Q 001896 923 KTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRYKKPR--LTTILEI 995 (998)
Q Consensus 923 ~~~~~i~~n~~~~~~~n~~~i~~a~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~~~~~--~~~~~~~ 995 (998)
+++++||+|+.|++.||+++||+|+|.|.|| |+.|+||+|.++|.+||+.|++|||.|++|++|. ..++.|.
T Consensus 842 kt~~rIk~N~~~A~~yn~~~IpIAagvF~P~-~~~L~Pw~A~lama~SSvsVv~sSllLk~~k~p~~~~~~~~e~ 915 (951)
T KOG0207|consen 842 KTVKRIKLNFVWALIYNLVGIPIAAGVFAPF-GIVLPPWMASLAMAASSVSVVLSSLLLKRYKKPTINKLYRYEA 915 (951)
T ss_pred HHHhhHHHHHHHHHHHHHhhhhhheecccCC-ccccCchHHHHHHHhhhHHHhhhHHHHhhccccccccceeccc
Confidence 9999999999999999999999999999998 4999999999999999999999999999999996 4444443
No 2
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-134 Score=1179.63 Aligned_cols=706 Identities=46% Similarity=0.708 Sum_probs=645.3
Q ss_pred ceeeeecCccchhhhhHHHhhhhcCCCceeEEeecCCCeEEEEecCCCCC-cccccccccccCCCcccccccCc-ccccc
Q 001896 203 KILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALS-SRSLVDGIAGRSNGKFQIRVMNP-FARMT 280 (998)
Q Consensus 203 ~~~~~v~gm~c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~y~~~~~~-~~~i~~~i~~~g~~~~~~~~~~~-~~~~~ 280 (998)
+..+.++||+|++|+++|| .+++++||.++++|+.++++.|.|++...+ .+++.+.++..| |....... .....
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~g---y~~~~~~~~~~~~~ 78 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAG---YSARLTAALADPAE 78 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcC---ccccccccccchhh
Confidence 5678999999999999999 999999999999999999999999987777 688999999888 43332100 00000
Q ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHhhcCchhhHHHHhhhccCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 001896 281 SRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRN 360 (998)
Q Consensus 281 ~~~~~~~~~~~~~~~~al~l~l~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~l~~ 360 (998)
.+.... ....++++.+.+++++.++..+..+.. .....|+.++++++++++.|+|||+.+|+.+++
T Consensus 79 ~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l~~ 144 (713)
T COG2217 79 AEARLL-RELLRRLIIAGLLTLPLLLLSLGLLLG-------------AFLLPWVSFLLATPVLFYGGWPFYRGAWRALRR 144 (713)
T ss_pred hhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhcc-------------hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 001011 344566777777777776653322110 135668899999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEE
Q 001896 361 GSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLV 440 (998)
Q Consensus 361 ~~~~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~ 440 (998)
+++|||+|++++++.||+||.+.++.. .||++++++++++++|+++|.+++.|+++.+++|.++.|++++++
T Consensus 145 ~~~~md~Lv~la~~~A~~~s~~~~~~~--------~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~ 216 (713)
T COG2217 145 GRLNMDTLVALATIGAYAYSLYATLFP--------VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVV 216 (713)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 999999999999999999999988762 899999999999999999999999999999999999999999887
Q ss_pred EecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEecceeeecccccCcCcccccCCCCceecceeeeeceEEEE
Q 001896 441 VKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQ 520 (998)
Q Consensus 441 ~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~ 520 (998)
. +|| ++++||+++|++||+|+|+|||+||+||+|++|++.||||+|||||.|+.|.+||.|++||+|.+|.++++
T Consensus 217 ~--~~~---~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s~vDeS~iTGEs~PV~k~~Gd~V~aGtiN~~G~l~i~ 291 (713)
T COG2217 217 R--GDG---EEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSSVDESMLTGESLPVEKKPGDEVFAGTVNLDGSLTIR 291 (713)
T ss_pred e--cCC---cEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcEEeecchhhCCCCCEecCCCCEEeeeEEECCccEEEE
Confidence 4 355 27999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHH
Q 001896 521 ATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMF 600 (998)
Q Consensus 521 v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (998)
|+++|.+|++++|++++++++.+|+|+|+++|+++.+|+|.++++++++|++|++.+. .+|..++.+
T Consensus 292 vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~-------------~~~~~a~~~ 358 (713)
T COG2217 292 VTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGG-------------GDWETALYR 358 (713)
T ss_pred EEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcC-------------CcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877641 368889999
Q ss_pred HhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHH
Q 001896 601 SISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFL 680 (998)
Q Consensus 601 ~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~~~~l 680 (998)
++++|+++|||||++++|+++..++.+++|+||++|+++++|.++++|+++||||||||+|+|+|.++...++ ++++++
T Consensus 359 a~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~-~e~~~L 437 (713)
T COG2217 359 ALAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDG-DEDELL 437 (713)
T ss_pred HHhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCC-CHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 889999
Q ss_pred HHHHHhhccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeeecCCeEEEEEcCeEEEEeeHhh
Q 001896 681 TLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKL 760 (998)
Q Consensus 681 ~~~~~~~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g~~~~~g~~~~ 760 (998)
++++++|+.|+||+++||+++++..+ ..++.++++++|+|+++.++|+.+.+|++++
T Consensus 438 ~laAalE~~S~HPiA~AIv~~a~~~~-----------------------~~~~~~~~~i~G~Gv~~~v~g~~v~vG~~~~ 494 (713)
T COG2217 438 ALAAALEQHSEHPLAKAIVKAAAERG-----------------------LPDVEDFEEIPGRGVEAEVDGERVLVGNARL 494 (713)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHhcC-----------------------CCCccceeeeccCcEEEEECCEEEEEcCHHH
Confidence 99999999999999999999988762 2344558999999999999999999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHH
Q 001896 761 LNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE 840 (998)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~ 840 (998)
+.+++.+.+. ..+..+.++.+|+++++++.|++++|++.++|++||+++++|++||++|++++|+|||+..+|+.+|++
T Consensus 495 ~~~~~~~~~~-~~~~~~~~~~~G~t~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~ 573 (713)
T COG2217 495 LGEEGIDLPL-LSERIEALESEGKTVVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKE 573 (713)
T ss_pred HhhcCCCccc-hhhhHHHHHhcCCeEEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH
Confidence 9999887765 566677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcceEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHHH
Q 001896 841 IGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDL 920 (998)
Q Consensus 841 ~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~ 920 (998)
+||+++++++.|+||.++|+.||++|++|+|||||+||+|||++||||||||.|+|+++++||+++++++++.+++++++
T Consensus 574 lGId~v~AellPedK~~~V~~l~~~g~~VamVGDGINDAPALA~AdVGiAmG~GtDvA~eaADvvL~~~dL~~v~~ai~l 653 (713)
T COG2217 574 LGIDEVRAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVVLMRDDLSAVPEAIDL 653 (713)
T ss_pred cChHhheccCCcHHHHHHHHHHHhcCCEEEEEeCCchhHHHHhhcCeeEeecCCcHHHHHhCCEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccHHHHHHHhhhhhHHHhhhccccccc
Q 001896 921 SRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRY 984 (998)
Q Consensus 921 ~r~~~~~i~~n~~~~~~~n~~~i~~a~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~ 984 (998)
+|+++++||||+.|+++||+++||+|+|++ ++||+|+++|.+||++|++|||||+++
T Consensus 654 sr~t~~~IkqNl~~A~~yn~~~iplA~~g~-------l~p~~A~~am~~SSv~VvlNaLRL~~~ 710 (713)
T COG2217 654 SRATRRIIKQNLFWAFGYNAIAIPLAAGGL-------LTPWIAALAMSGSSVLVVLNALRLLRS 710 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 999999999999999999999999998543 799999999999999999999999874
No 3
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=6e-122 Score=1139.97 Aligned_cols=811 Identities=37% Similarity=0.591 Sum_probs=699.0
Q ss_pred eEEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchhccccCC-----C
Q 001896 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESST-----S 120 (998)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~-----~ 120 (998)
+++++.|+||+|++|+.+|++++++++||.++++++.+ .++.. ..+.+++.++++++||+++....+.. .
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~~--~~v~~---~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~ 77 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITE--AHVTG---TASAEALIETIKQAGYDASVSHPKAKPLTESS 77 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeeeE--EEEEe---cCCHHHHHHHHHhcCCcccccccccccccccc
Confidence 56889999999999999999999999999999999954 44443 24778999999999999986532110 0
Q ss_pred C------------C--CCCcceeeeeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHH
Q 001896 121 G------------P--KPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAI 186 (998)
Q Consensus 121 ~------------~--~~~~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i 186 (998)
. + ......+..+.++||+|++|+..+++.+.+.+||.++.+++.+++..+.+ ..+.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I 154 (834)
T PRK10671 78 IPSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAV 154 (834)
T ss_pred cCchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHH
Confidence 0 0 00011245788999999999999999999999999999999999988873 24678888888
Q ss_pred HhcCCceeeeccCCccceeeeecCccchhhhhHHHhhhhcCCCceeEEeecCCCeEEEEecCCCCCcccccccccccCCC
Q 001896 187 EDAGFEASFVQSSGQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNG 266 (998)
Q Consensus 187 ~~~G~~~~~~~~~~~~~~~~~v~gm~c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~y~~~~~~~~~i~~~i~~~g~~ 266 (998)
+++||.+.+..+.. ...
T Consensus 155 ~~~Gy~a~~~~~~~----------------------------------------------~~~----------------- 171 (834)
T PRK10671 155 EKAGYGAEAIEDDA----------------------------------------------KRR----------------- 171 (834)
T ss_pred HhcCCCcccccccc----------------------------------------------chh-----------------
Confidence 99999764211000 000
Q ss_pred cccccccCccccccccchHHHHHHHHHHHHHHHhHHHHHHHHhhcCchhhHHHHhhhccCCCchHHHHH-HHHHHHHHHh
Q 001896 267 KFQIRVMNPFARMTSRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLN-WALVSVVQFV 345 (998)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~l~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 345 (998)
....+..+.+.+.+.+++..+++++++++++.+...++. . .......|+. +++++|+++|
T Consensus 172 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~ 232 (834)
T PRK10671 172 ----------ERQQETAQATMKRFRWQAIVALAVGIPVMVWGMIGDNMM-------V--TADNRSLWLVIGLITLAVMVF 232 (834)
T ss_pred ----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------c--CccchhHHHHHHHHHHHHHHH
Confidence 000000111223445566777777777666543110000 0 0000112553 5678899999
Q ss_pred cCHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHhh-hcCCCCCchhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 001896 346 IGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGV-VTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSD 424 (998)
Q Consensus 346 ~g~~~~~~~~~~l~~~~~~md~Li~l~~~~a~~~s~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~ 424 (998)
+|+|||+.||++++++++|||+|+++++++||+||++.++... ......+.||++++++++|+++|+|+|.+++.|+++
T Consensus 233 ~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~~~~ 312 (834)
T PRK10671 233 AGGHFYRSAWKSLLNGSATMDTLVALGTGAAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHMLEARARQRSSK 312 (834)
T ss_pred hhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998766421 111112459999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEecceeeecccccCcCcccccCCCC
Q 001896 425 AIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINS 504 (998)
Q Consensus 425 ~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~~~Vdes~LTGEs~pv~k~~g~ 504 (998)
.+++|.++.|.+++++ |+| ++++|++++|+|||+|+|++||+||+||+|++|++.||||+|||||.|+.|++||
T Consensus 313 ~~~~L~~l~p~~a~~~---~~~---~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~~vdeS~lTGEs~pv~k~~gd 386 (834)
T PRK10671 313 ALEKLLDLTPPTARVV---TDE---GEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGD 386 (834)
T ss_pred HHHHHhccCCCEEEEE---eCC---cEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceEEEeehhhcCCCCCEecCCCC
Confidence 9999999999999998 677 4689999999999999999999999999999999999999999999999999999
Q ss_pred ceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 001896 505 PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPE 584 (998)
Q Consensus 505 ~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~ 584 (998)
.||+||+|.+|.++++|+++|.+|++++|.+++++++.+|+++|+.+++++++|+|++++++++++++|++.+.
T Consensus 387 ~V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~~~~~~------ 460 (834)
T PRK10671 387 SVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFGP------ 460 (834)
T ss_pred EEEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876431
Q ss_pred cccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceE
Q 001896 585 QWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRAT 664 (998)
Q Consensus 585 ~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~ 664 (998)
...|..++.+++++++++|||||++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+
T Consensus 461 ------~~~~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~fDKTGTLT~g~~~ 534 (834)
T PRK10671 461 ------APQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKTGTLTEGKPQ 534 (834)
T ss_pred ------chHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEEEcCCCccccCceE
Confidence 11366788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeeecCCeE
Q 001896 665 VTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGI 744 (998)
Q Consensus 665 v~~i~~~~~~~~~~~l~~~~~~~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi 744 (998)
|.++...++.++++++.+++++|..++||+++|++++++... ...+.++++++|+|+
T Consensus 535 v~~~~~~~~~~~~~~l~~a~~~e~~s~hp~a~Ai~~~~~~~~-----------------------~~~~~~~~~~~g~Gv 591 (834)
T PRK10671 535 VVAVKTFNGVDEAQALRLAAALEQGSSHPLARAILDKAGDMT-----------------------LPQVNGFRTLRGLGV 591 (834)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCC-----------------------CCCcccceEecceEE
Confidence 999998888888999999999999999999999999875321 123467888999999
Q ss_pred EEEEcCeEEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEE
Q 001896 745 QCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPV 824 (998)
Q Consensus 745 ~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~ 824 (998)
.+.++|+.+.+|+++++.+.++.. +.+.+..+.+++.|.+++++++|+.++|.+.+.|++||+++++|+.|++.|++++
T Consensus 592 ~~~~~g~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~ 670 (834)
T PRK10671 592 SGEAEGHALLLGNQALLNEQQVDT-KALEAEITAQASQGATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLV 670 (834)
T ss_pred EEEECCEEEEEeCHHHHHHcCCCh-HHHHHHHHHHHhCCCeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEE
Confidence 999999999999999998877643 3345556677889999999999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCE
Q 001896 825 MVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADY 904 (998)
Q Consensus 825 i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~ 904 (998)
|+|||+..++..+++++|++++++++.|++|.++++.++.+++.|+|+|||.||++|+++||+||+||++++.++++||+
T Consensus 671 ~~Tgd~~~~a~~ia~~lgi~~~~~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvgia~g~g~~~a~~~ad~ 750 (834)
T PRK10671 671 MLTGDNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAI 750 (834)
T ss_pred EEcCCCHHHHHHHHHHcCCCEEEeCCCHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCeeEEecCCCHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccHHHHHHHhhhhhHHHhhhccccccc
Q 001896 905 VLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRY 984 (998)
Q Consensus 905 vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~ 984 (998)
+++++++++++.++++||+++++|+||+.|+++||++++|+|+|+|+|++|+.|+|++|+++|.+||++|++||+||+++
T Consensus 751 vl~~~~~~~i~~~i~l~r~~~~~i~~Nl~~a~~yn~~~i~~a~g~~~p~~g~~l~p~~a~~~m~~ss~~vv~nslrl~~~ 830 (834)
T PRK10671 751 TLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSLGIPIAAGILWPFTGTLLNPVVAGAAMALSSITVVSNANRLLRF 830 (834)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhcccCHHHHHHHhcccceeehhhhHHhcCC
Confidence 99999999999999999999999999999999999999999999999988988999999999999999999999999887
Q ss_pred CCCC
Q 001896 985 KKPR 988 (998)
Q Consensus 985 ~~~~ 988 (998)
++|+
T Consensus 831 ~~~~ 834 (834)
T PRK10671 831 KPKE 834 (834)
T ss_pred CCCC
Confidence 7764
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=1.6e-108 Score=998.20 Aligned_cols=688 Identities=29% Similarity=0.436 Sum_probs=595.0
Q ss_pred ccceeeeecCccchhhhhHHHhhhhcCCCceeEEeecCCCeEEEEecCCCCCcccccccccccCCCcccccccCcccccc
Q 001896 201 QDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMNPFARMT 280 (998)
Q Consensus 201 ~~~~~~~v~gm~c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~y~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~~ 280 (998)
.++.++.+.||+|..|+..+|+.+.+.+||.++++++.+++..+.|++.. . +++.+.++..| |+....+..
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~G---y~a~~~~~~---- 122 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAG---FSLRDEQAA---- 122 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhcc---cccccccch----
Confidence 34667889999999999999999999999999999999999999998763 2 55656666666 332211100
Q ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHhhcCchhhHHHHhhhccCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 001896 281 SRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRN 360 (998)
Q Consensus 281 ~~~~~~~~~~~~~~~~al~l~l~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~l~~ 360 (998)
..+.+...++ .....+++ ..++++++.+.. + . +...|+.++++ .++.|+|||++||+++++
T Consensus 123 -~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~---~--------~--~~~~~~~~~~~---~~~~~~~~~~~a~~~l~~ 183 (741)
T PRK11033 123 -AAAPESRLKS-ENLPLITL-AVMMAISWGLEQ---F--------N--HPFGQLAFIAT---TLVGLYPIARKALRLIRS 183 (741)
T ss_pred -hhhHHHHHHH-HHHHHHHH-HHHHHHHHHHhh---h--------h--hHHHHHHHHHH---HHHHHHHHHHHHHHHHHc
Confidence 0011111111 11111111 222222221110 0 0 11123333333 467889999999999999
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEE
Q 001896 361 GST-NMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALL 439 (998)
Q Consensus 361 ~~~-~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v 439 (998)
+++ |||+|++++++++++++ .| +.++++++++++|+++|.+++.|+++.+++|.++.|.++++
T Consensus 184 ~~~~~~~~L~~~a~~~a~~~~---------------~~-~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~v 247 (741)
T PRK11033 184 GSPFAIETLMSVAAIGALFIG---------------AT-AEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATR 247 (741)
T ss_pred CCCCCccHHHHHHHHHHHHHc---------------ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 885 99999999999887654 23 45788999999999999999999999999999999999999
Q ss_pred EEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEecceeeecccccCcCcccccCCCCceecceeeeeceEEE
Q 001896 440 VVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHI 519 (998)
Q Consensus 440 ~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~ 519 (998)
+ ||| ++++|++++|+|||+|+|++||+||+||+|++|++.||||+|||||.|+.|++|+.||+||++.+|.+++
T Consensus 248 i---r~g---~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~~vdes~lTGEs~Pv~k~~Gd~V~aGt~~~~G~~~i 321 (741)
T PRK11033 248 L---RDG---EREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGEKVPAGATSVDRLVTL 321 (741)
T ss_pred E---ECC---EEEEEEHHHCCCCCEEEECCCCEEecceEEEECcEEeecccccCCCCCEecCCCCeeccCCEEcCceEEE
Confidence 8 788 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHH
Q 001896 520 QATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALM 599 (998)
Q Consensus 520 ~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (998)
+|+++|.+|+++||.+++++++.+++|+|+.+|+++++|+|+++++++++|++|++.. ..+|..++.
T Consensus 322 ~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~~-------------~~~~~~~i~ 388 (741)
T PRK11033 322 EVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLF-------------AAPWQEWIY 388 (741)
T ss_pred EEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------cCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999875432 134777889
Q ss_pred HHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHH
Q 001896 600 FSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEF 679 (998)
Q Consensus 600 ~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~~~~ 679 (998)
+++++++++|||+|++++|+++..++.+++|+||++|+++++|+|+++|++|||||||||+|+|+|.++.++++.+++++
T Consensus 389 ~a~svlviacPcaL~latP~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~~ 468 (741)
T PRK11033 389 RGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATGISESEL 468 (741)
T ss_pred HHHHHHHHhchhhhhhhhHHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEecCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeeecCCeEEEEEcCeEEEEeeHh
Q 001896 680 LTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRK 759 (998)
Q Consensus 680 l~~~~~~~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g~~~~~g~~~ 759 (998)
+.+++++|..+.||+++|++++++..+. .++...+++.++|+|+++.++|+.+.+|+++
T Consensus 469 l~~aa~~e~~s~hPia~Ai~~~a~~~~~---------------------~~~~~~~~~~~~g~Gv~~~~~g~~~~ig~~~ 527 (741)
T PRK11033 469 LALAAAVEQGSTHPLAQAIVREAQVRGL---------------------AIPEAESQRALAGSGIEGQVNGERVLICAPG 527 (741)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhcCC---------------------CCCCCcceEEEeeEEEEEEECCEEEEEecch
Confidence 9999999999999999999999876531 1223456788899999999999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHH
Q 001896 760 LLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 839 (998)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~ 839 (998)
++.+ .+.+.....+.++.+|++++++++|++++|++.|+|++||+++++|++|+++|++++|+|||+..++.++|+
T Consensus 528 ~~~~----~~~~~~~~~~~~~~~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~ 603 (741)
T PRK11033 528 KLPP----LADAFAGQINELESAGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAG 603 (741)
T ss_pred hhhh----ccHHHHHHHHHHHhCCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 8865 234455556778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCcceEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHH
Q 001896 840 EIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 840 ~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
++||+ ++++++|++|.++|+.+++. +.|+|||||+||+|||+.|||||+||++++.++++||++++.+++..|+++++
T Consensus 604 ~lgi~-~~~~~~p~~K~~~v~~l~~~-~~v~mvGDgiNDapAl~~A~vgia~g~~~~~a~~~adivl~~~~l~~l~~~i~ 681 (741)
T PRK11033 604 ELGID-FRAGLLPEDKVKAVTELNQH-APLAMVGDGINDAPAMKAASIGIAMGSGTDVALETADAALTHNRLRGLAQMIE 681 (741)
T ss_pred HcCCC-eecCCCHHHHHHHHHHHhcC-CCEEEEECCHHhHHHHHhCCeeEEecCCCHHHHHhCCEEEecCCHHHHHHHHH
Confidence 99995 78889999999999999865 57999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccHHHHHHHhhhhhHHHhhhcccccccC
Q 001896 920 LSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRYK 985 (998)
Q Consensus 920 ~~r~~~~~i~~n~~~~~~~n~~~i~~a~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~~ 985 (998)
+||+++++|+||+.|+++||++++|+++..+ ++||+|+++|.+||++|++||+|+.++|
T Consensus 682 ~sr~~~~~I~~nl~~a~~~n~~~i~~a~~g~-------~~~~~a~~~~~~ss~~v~~Nslrl~~~~ 740 (741)
T PRK11033 682 LSRATHANIRQNITIALGLKAIFLVTTLLGI-------TGLWLAVLADSGATALVTANALRLLRKR 740 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHcChHHHHHHHHHhhcccC
Confidence 9999999999999999999999999987222 6899999999999999999999998765
No 5
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=6.5e-99 Score=891.29 Aligned_cols=561 Identities=56% Similarity=0.875 Sum_probs=522.2
Q ss_pred cCHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCchhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 001896 346 IGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVT-GFWSPTYFETSAMLITFVLFGKYLEILAKGKTSD 424 (998)
Q Consensus 346 ~g~~~~~~~~~~l~~~~~~md~Li~l~~~~a~~~s~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~ 424 (998)
+|+|||++||+++++|++|||+|++++++.+|+||++.++.+... +.....||++++++++++++|+++|.++++|+++
T Consensus 1 ~g~~~~~~a~~~l~~~~~~md~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~ 80 (562)
T TIGR01511 1 AGRPFYKSAWKALRHKAPNMDTLIALGTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASD 80 (562)
T ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999988864321 1122479999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEecceeeecccccCcCcccccCCCC
Q 001896 425 AIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINS 504 (998)
Q Consensus 425 ~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~~~Vdes~LTGEs~pv~k~~g~ 504 (998)
.+++|.++.|.+++++. ++| ++++|++++|+|||+|+|++||+|||||+|++|++.||||+|||||.|+.|++||
T Consensus 81 ~~~~L~~~~p~~a~~~~--~~~---~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~gd 155 (562)
T TIGR01511 81 ALSKLAKLQPSTATLLT--KDG---SIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGESEVDESLVTGESLPVPKKVGD 155 (562)
T ss_pred HHHHHHhcCCCEEEEEE--CCC---eEEEEEHHHCCCCCEEEECCCCEecCceEEEECceEEehHhhcCCCCcEEcCCCC
Confidence 99999999999999883 234 4689999999999999999999999999999999999999999999999999999
Q ss_pred ceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 001896 505 PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPE 584 (998)
Q Consensus 505 ~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~ 584 (998)
.||+||+|.+|.++++|+++|.+|+++++.+++++++.+|+|+|+++|+++++|+|+++++++++|++|.
T Consensus 156 ~V~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~---------- 225 (562)
T TIGR01511 156 PVIAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWL---------- 225 (562)
T ss_pred EEEeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998887764
Q ss_pred cccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceE
Q 001896 585 QWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRAT 664 (998)
Q Consensus 585 ~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~ 664 (998)
.++.+++++++++|||+|++++|+++..++.+++|+||++|+++++|+|+++|++|||||||||+|+|+
T Consensus 226 -----------~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~ 294 (562)
T TIGR01511 226 -----------FALEFAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPT 294 (562)
T ss_pred -----------HHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEE
Confidence 256789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeeecCCeE
Q 001896 665 VTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGI 744 (998)
Q Consensus 665 v~~i~~~~~~~~~~~l~~~~~~~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi 744 (998)
|.++.+.++.++++++.+++++|.+++||+++|++++++..+. ....+.++++++|+|+
T Consensus 295 v~~i~~~~~~~~~~~l~~aa~~e~~s~HPia~Ai~~~~~~~~~---------------------~~~~~~~~~~~~g~Gi 353 (562)
T TIGR01511 295 VTDVHVFGDRDRTELLALAAALEAGSEHPLAKAIVSYAKEKGI---------------------TLVEVSDFKAIPGIGV 353 (562)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC---------------------CcCCCCCeEEECCceE
Confidence 9999988888889999999999999999999999999976531 1123456788999999
Q ss_pred EEEEcCeEEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEE
Q 001896 745 QCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPV 824 (998)
Q Consensus 745 ~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~ 824 (998)
.+.++|+++.+|+++++.+.+..+++ ..++|.++++++.|++++|.+.++|++||+++++|++||++|++++
T Consensus 354 ~~~~~g~~~~iG~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ 425 (562)
T TIGR01511 354 EGTVEGTKIQLGNEKLLGENAIKIDG--------KAEQGSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPV 425 (562)
T ss_pred EEEECCEEEEEECHHHHHhCCCCCCh--------hhhCCCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEE
Confidence 99999999999999999887765432 3467899999999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCE
Q 001896 825 MVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADY 904 (998)
Q Consensus 825 i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~ 904 (998)
|+|||+...+..+++++|++ +++++.|++|.++++.++++++.|+|||||.||++|+++||+||+||++++.+++.||+
T Consensus 426 ilSgd~~~~a~~ia~~lgi~-~~~~~~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vgia~g~g~~~a~~~Adv 504 (562)
T TIGR01511 426 MLTGDNRKTAKAVAKELGIN-VRAEVLPDDKAALIKELQEKGRVVAMVGDGINDAPALAQADVGIAIGAGTDVAIEAADV 504 (562)
T ss_pred EEcCCCHHHHHHHHHHcCCc-EEccCChHHHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEEEEeCCcCHHHHhhCCE
Confidence 99999999999999999996 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccHHHH
Q 001896 905 VLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAA 963 (998)
Q Consensus 905 vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~g~~~~~~g~~l~p~~a 963 (998)
+++++++..+++++++||+++++|+||+.|+++||++++|+|+|++.|+ |+.|+|++|
T Consensus 505 vl~~~~l~~l~~~i~lsr~~~~~i~qn~~~a~~~n~~~i~la~~~~~~~-g~~~~p~~a 562 (562)
T TIGR01511 505 VLMRNDLNDVATAIDLSRKTLRRIKQNLLWAFGYNVIAIPIAAGVLYPI-GILLSPAVA 562 (562)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccCCCcC
Confidence 9999999999999999999999999999999999999999999888887 778999865
No 6
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=5.2e-91 Score=827.53 Aligned_cols=550 Identities=47% Similarity=0.719 Sum_probs=505.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecC
Q 001896 365 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 444 (998)
Q Consensus 365 md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r 444 (998)
||+|++++++.+|++|.| ..+++++++++++++++.++++|+++.+++|.++.|.+++++ |
T Consensus 1 ~d~l~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~---r 61 (556)
T TIGR01525 1 MDLLMALATIAAYAMGLV----------------LEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVL---Q 61 (556)
T ss_pred CcHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE---E
Confidence 799999999999988732 257789999999999999999999999999999999999999 6
Q ss_pred CCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEecceeeecccccCcCcccccCCCCceecceeeeeceEEEEEEEe
Q 001896 445 VGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKV 524 (998)
Q Consensus 445 ~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~ 524 (998)
+|. ++++|++++|+|||+|++++||+|||||+|++|++.||||+|||||.|+.|++|+.||+||.+.+|.++++|+++
T Consensus 62 ~~g--~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~g~~~~~v~~~ 139 (556)
T TIGR01525 62 GDG--SEEEVPVEELQVGDIVIVRPGERIPVDGVVISGESEVDESALTGESMPVEKKEGDEVFAGTINGDGSLTIRVTKL 139 (556)
T ss_pred CCC--eEEEEEHHHCCCCCEEEECCCCEeccceEEEecceEEeehhccCCCCCEecCCcCEEeeceEECCceEEEEEEEe
Confidence 630 468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhh
Q 001896 525 GSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISV 604 (998)
Q Consensus 525 g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isv 604 (998)
|.+|++|++.+++++++.+++|+|+.+++++++++++++++++++|++|++.+. + .++.+++++
T Consensus 140 g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~---------------~-~~~~~~~~v 203 (556)
T TIGR01525 140 GEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGA---------------L-GALYRALAV 203 (556)
T ss_pred cccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------c-hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876421 1 678899999
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCC--HHHHHHH
Q 001896 605 VVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD--RGEFLTL 682 (998)
Q Consensus 605 lv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~--~~~~l~~ 682 (998)
++++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+|.++.+.++.+ .++++.+
T Consensus 204 lv~~~P~al~l~~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l~~ 283 (556)
T TIGR01525 204 LVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDASISEEELLAL 283 (556)
T ss_pred HhhccccchhehhHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877665 7889999
Q ss_pred HHHhhccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCccccccc-ceeeecCCeEEEEEcC-eEEEEeeHhh
Q 001896 683 VASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVS-DFSALPGRGIQCFISG-KQVLVGNRKL 760 (998)
Q Consensus 683 ~~~~~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~gi~~~~~g-~~~~~g~~~~ 760 (998)
+++++..+.||+++|+++++++.+... .. . ++.+++++|+++.++| .++.+|++++
T Consensus 284 a~~~e~~~~hp~~~Ai~~~~~~~~~~~---------------------~~-~~~~~~~~~~gi~~~~~g~~~~~lg~~~~ 341 (556)
T TIGR01525 284 AAALEQSSSHPLARAIVRYAKKRGLEL---------------------PK-QEDVEEVPGKGVEATVDGQEEVRIGNPRL 341 (556)
T ss_pred HHHHhccCCChHHHHHHHHHHhcCCCc---------------------cc-ccCeeEecCCeEEEEECCeeEEEEecHHH
Confidence 999999999999999999998753210 00 1 4566789999999999 7999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCC-CEEEEEcCCCHHHHHHHHH
Q 001896 761 LNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMG-VRPVMVTGDNWRTAHAVAR 839 (998)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~g-i~~~i~tgd~~~~a~~ia~ 839 (998)
+...+...+ ..+.....+.++|++++++++|++++|.+.++|++||+++++|+.|+++| ++++|+|||+...+.++++
T Consensus 342 ~~~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~ 420 (556)
T TIGR01525 342 LELAAEPIS-ASPDLLNEGESQGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAA 420 (556)
T ss_pred HhhcCCCch-hhHHHHHHHhhCCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHH
Confidence 844433322 23344556778899999999999999999999999999999999999999 9999999999999999999
Q ss_pred HhCcceEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHH
Q 001896 840 EIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 840 ~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
++|++++|+++.|++|.++++.+++.++.|+|+|||.||++|+++||+|+++|++++.+++.||+++.+++++.++++++
T Consensus 421 ~lgi~~~f~~~~p~~K~~~v~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~Ad~vi~~~~~~~l~~~i~ 500 (556)
T TIGR01525 421 ELGIDEVHAELLPEDKLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAGSDVAIEAADIVLLNDDLSSLPTAID 500 (556)
T ss_pred HhCCCeeeccCCHHHHHHHHHHHHHcCCEEEEEECChhHHHHHhhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccHH-HHHHHhhhhhHHHhhhcccc
Q 001896 920 LSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPW-AAGACMALSSVSVVCSSLLL 981 (998)
Q Consensus 920 ~~r~~~~~i~~n~~~~~~~n~~~i~~a~g~~~~~~g~~l~p~-~a~~~m~~ss~~v~~~s~~l 981 (998)
+||+++++|++|+.|+++||++++++|++++ ++|| +|+++|.+||++|++||+|+
T Consensus 501 ~~r~~~~~i~~nl~~a~~~N~~~i~~a~~g~-------~~p~~~aa~~m~~ss~~v~lns~r~ 556 (556)
T TIGR01525 501 LSRKTRRIIKQNLAWALGYNLVAIPLAAGGL-------LPLWLLAVLLHEGSTVLVVLNSLRL 556 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHhchHHHHHHHhhcC
Confidence 9999999999999999999999999998543 6896 99999999999999999985
No 7
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=1.8e-91 Score=825.61 Aligned_cols=534 Identities=40% Similarity=0.613 Sum_probs=496.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecC
Q 001896 365 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 444 (998)
Q Consensus 365 md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r 444 (998)
||+|+++++.++|+++ .|++. ++++++++++.+++.++++|+++.+++|.++.|.+++++ |
T Consensus 1 ~~~l~~~a~~~~~~~~---------------~~~~~-~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~---r 61 (536)
T TIGR01512 1 VDLLMALAALGAVAIG---------------EYLEG-ALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVL---R 61 (536)
T ss_pred CcHHHHHHHHHHHHHh---------------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE---E
Confidence 6899999998888764 35654 778889999999999999999999999999999999999 7
Q ss_pred CCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEecceeeecccccCcCcccccCCCCceecceeeeeceEEEEEEEe
Q 001896 445 VGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKV 524 (998)
Q Consensus 445 ~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~ 524 (998)
+| ++++|++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|++|+.+|+||.+.+|+++++|+++
T Consensus 62 ~g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~G~~~~~V~~~ 138 (536)
T TIGR01512 62 GG---SLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTSTVDESALTGESVPVEKAPGDEVFAGAINLDGVLTIVVTKL 138 (536)
T ss_pred CC---EEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcEEEEecccCCCCCcEEeCCCCEEEeeeEECCceEEEEEEEe
Confidence 87 578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhh
Q 001896 525 GSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISV 604 (998)
Q Consensus 525 g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isv 604 (998)
|.+|++|++.+++++++.+++|+|+.++++++++++++++++++.|++|++.. .+..++.+++++
T Consensus 139 g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~sv 203 (536)
T TIGR01512 139 PADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLK---------------RWPFWVYRALVL 203 (536)
T ss_pred ccccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------ccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888776532 122378899999
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHH
Q 001896 605 VVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVA 684 (998)
Q Consensus 605 lv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~~~~l~~~~ 684 (998)
++++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+|.++.+ .+++++++
T Consensus 204 lv~~~P~aL~la~~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~------~~~l~~a~ 277 (536)
T TIGR01512 204 LVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVP------AEVLRLAA 277 (536)
T ss_pred HhhcCccccccchHHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeH------HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999865 37899999
Q ss_pred HhhccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeeecCCeEEEEEcCeEEEEeeHhhhhhc
Q 001896 685 SAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNES 764 (998)
Q Consensus 685 ~~~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g~~~~~g~~~~~~~~ 764 (998)
++|..+.||+++|+++++++.+ ...++++.+++|+++.++|+++.+|+.+++.+.
T Consensus 278 ~~e~~~~hp~~~Ai~~~~~~~~-------------------------~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~~~~ 332 (536)
T TIGR01512 278 AAEQASSHPLARAIVDYARKRE-------------------------NVESVEEVPGEGVRAVVDGGEVRIGNPRSLEAA 332 (536)
T ss_pred HHhccCCCcHHHHHHHHHHhcC-------------------------CCcceEEecCCeEEEEECCeEEEEcCHHHHhhc
Confidence 9999999999999999987641 234466788999999999999999999998776
Q ss_pred CCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCC-EEEEEcCCCHHHHHHHHHHhCc
Q 001896 765 GITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGV-RPVMVTGDNWRTAHAVAREIGI 843 (998)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi-~~~i~tgd~~~~a~~ia~~~gi 843 (998)
+.. .+..+|.+++++++|+.+.|.+.++|++||+++++|++|+++|+ +++|+|||+..++..+++++|+
T Consensus 333 ~~~----------~~~~~~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi 402 (536)
T TIGR01512 333 VGA----------RPESAGKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGI 402 (536)
T ss_pred CCc----------chhhCCCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCC
Confidence 542 34567889999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEec-CchHHHHHhcCEEEecCChhHHHHHHHHHH
Q 001896 844 QDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSR 922 (998)
Q Consensus 844 ~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r 922 (998)
+++|+++.|++|.++++.++.+++.|+|+|||.||++|+++||+||++| ++++.+++.||++++++++..+.+++++||
T Consensus 403 ~~~f~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i~~~r 482 (536)
T TIGR01512 403 DEVHAELLPEDKLEIVKELREKYGPVAMVGDGINDAPALAAADVGIAMGASGSDVAIETADVVLLNDDLSRLPQAIRLAR 482 (536)
T ss_pred hhhhhccCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHhCCEEEEeCCCccHHHHHhCCEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccHHHHHHHhhhhhHHHhhhcccccc
Q 001896 923 KTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRR 983 (998)
Q Consensus 923 ~~~~~i~~n~~~~~~~n~~~i~~a~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~ 983 (998)
++++++++|+.|+++||++++|+|+.+ .++||+|+++|.+||++|++||+|+++
T Consensus 483 ~~~~~i~~nl~~a~~~n~~~i~~a~~G-------~~~p~~aa~~m~~ss~~v~~ns~r~~~ 536 (536)
T TIGR01512 483 RTRRIVKQNVVIALGIILLLILLALFG-------VLPLWLAVLGHEGSTVLVILNALRLLR 536 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------hccHHHHHHHHcChHHHHHHHHHhhcC
Confidence 999999999999999999999999732 279999999999999999999999863
No 8
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=1.2e-87 Score=818.78 Aligned_cols=543 Identities=25% Similarity=0.375 Sum_probs=463.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCccccc
Q 001896 397 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 476 (998)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD 476 (998)
|.+ +++++++++++..++.++++|+.+.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+||||
T Consensus 55 ~~~-~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~---Rdg---~~~~I~~~~Lv~GDiV~l~~Gd~IPaD 127 (755)
T TIGR01647 55 WVD-FVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVL---RDG---KWQEIPASELVPGDVVRLKIGDIVPAD 127 (755)
T ss_pred hhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE---ECC---EEEEEEhhhCcCCCEEEECCCCEEece
Confidence 444 4566677778888899999999999999999999999999 888 679999999999999999999999999
Q ss_pred EEEEecc-eeeecccccCcCcccccCCCCceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHH
Q 001896 477 GIVVWGT-SYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA 555 (998)
Q Consensus 477 g~vl~G~-~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~ 555 (998)
|+|++|+ ..||||+|||||.|+.|.+|+.+|+||.+.+|+++++|++||.+|++|+|.+++++++.+++|+|+.+++++
T Consensus 128 g~vi~g~~~~VDeS~LTGES~PV~K~~~~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~ 207 (755)
T TIGR01647 128 CRLFEGDYIQVDQAALTGESLPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIG 207 (755)
T ss_pred EEEEecCceEEEcccccCCccceEeccCCeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHH
Confidence 9999998 789999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEE
Q 001896 556 SIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLI 635 (998)
Q Consensus 556 ~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilv 635 (998)
+++++++++++++.+++|++.. ..+|..++.+++++++++|||+|++++|+++..++++|+|+|+++
T Consensus 208 ~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilv 274 (755)
T TIGR01647 208 LFLIVLIGVLVLIELVVLFFGR-------------GESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIV 274 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEE
Confidence 9999999998888887776521 135788899999999999999999999999999999999999999
Q ss_pred ecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCC-CCHHHHHHHHHHh-hccCCChHHHHHHHHHHhcCCCCCCCC
Q 001896 636 KGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-MDRGEFLTLVASA-EASSEHPLAKAVVEYARHFHFFDDPSL 713 (998)
Q Consensus 636 k~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~-~~~~~~l~~~~~~-~~~~~hp~~~ai~~~~~~~~~~~~~~~ 713 (998)
|+++++|+||++|+||||||||||+|+|+|.+++..++ .+.++++.+++.+ +..+.||+++|+++++++.+...
T Consensus 275 k~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~~~~~~---- 350 (755)
T TIGR01647 275 TRLTAIEELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKEAR---- 350 (755)
T ss_pred cccHHHHhccCCcEEEecCCCccccCceEEEEEEecCCCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhHHHH----
Confidence 99999999999999999999999999999999988754 6778888887765 47789999999999887542000
Q ss_pred CCCCCCcccccCCCcccccccceeeecCCeEEEEE----cCeE--EEEeeHhhhhhcCC---CCChhhHHHHHHHHHcCC
Q 001896 714 NPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFI----SGKQ--VLVGNRKLLNESGI---TIPDHVESFVVELEESAR 784 (998)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~----~g~~--~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~g~ 784 (998)
. ........+|++ .+++....+ +|+. +.+|+++.+.+... ..++.+++..+++..+|+
T Consensus 351 --~----------~~~~~~~~pf~~-~~k~~~~~v~~~~~g~~~~~~kGa~e~il~~c~~~~~~~~~~~~~~~~~~~~G~ 417 (755)
T TIGR01647 351 --D----------GYKVLEFVPFDP-VDKRTEATVEDPETGKRFKVTKGAPQVILDLCDNKKEIEEKVEEKVDELASRGY 417 (755)
T ss_pred --h----------cCceEEEeccCC-CCCeEEEEEEeCCCceEEEEEeCChHHHHHhcCCcHHHHHHHHHHHHHHHhCCC
Confidence 0 001111222332 355665555 2554 45699998865432 223445566677889999
Q ss_pred eEEEEEE-C----CeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce--------------
Q 001896 785 TGILVAY-D----DNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-------------- 845 (998)
Q Consensus 785 ~~i~va~-~----~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~-------------- 845 (998)
+++++|+ + .+++|+++|+||+||+++++|++||++|++++|+|||+..+|.++|+++||.+
T Consensus 418 rvl~vA~~~~e~~l~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~~~~~~l~~~~~~ 497 (755)
T TIGR01647 418 RALGVARTDEEGRWHFLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYTADVLLKGDNR 497 (755)
T ss_pred EEEEEEEEcCCCCcEEEEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCcCHHHhcCCcch
Confidence 9999999 2 38999999999999999999999999999999999999999999999999974
Q ss_pred ----------------EEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecC
Q 001896 846 ----------------VMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRN 909 (998)
Q Consensus 846 ----------------~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~ 909 (998)
+|++++|+||.++|+.+|++|+.|+|+|||+||+|||++||||||||+|++.++++||++++++
T Consensus 498 ~~~~~~~~~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~~gtdvAkeaADivLl~d 577 (755)
T TIGR01647 498 DDLPSGELGEMVEDADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVAGATDAARSAADIVLTEP 577 (755)
T ss_pred hhCCHHHHHHHHHhCCEEEecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEecCCcHHHHHhCCEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCCCccHHH---HHHHhhhhhHHHhhhc
Q 001896 910 SLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAA-GVFFPSLGIKLPPWA---AGACMALSSVSVVCSS 978 (998)
Q Consensus 910 ~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~-g~~~~~~g~~l~p~~---a~~~m~~ss~~v~~~s 978 (998)
+++.++.++++||++++||++|+.|.++.|+..+...+ +.+ ++|+.|+|+. ..+++.++++.+....
T Consensus 578 ~l~~I~~ai~~gR~~~~ni~k~i~~~~~~n~~~~~~~~~~~l--~~~~~l~~~~il~~~l~~d~~~~~l~~~~ 648 (755)
T TIGR01647 578 GLSVIVDAILESRKIFQRMKSYVIYRIAETIRIVFFFGLLIL--ILNFYFPPIMVVIIAILNDGTIMTIAYDN 648 (755)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCcchhHHHHHHHHHHHhHhHhhccCCC
Confidence 99999999999999999999999999999997654332 222 1234478854 3344444334333333
No 9
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=4.2e-85 Score=767.85 Aligned_cols=498 Identities=26% Similarity=0.371 Sum_probs=427.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC-eEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEec
Q 001896 404 LITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482 (998)
Q Consensus 404 l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~-~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G 482 (998)
+++..++|.|+|.+++.|+++.+++|.++.|. +++++. ||| ++++|++++|+|||+|+|++||+||+||+|++|
T Consensus 72 l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~--rdg---~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG 146 (673)
T PRK14010 72 LLLTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIK--QDG---SYEMIDASDLKKGHIVRVATGEQIPNDGKVIKG 146 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEE--eCC---EEEEEEHHHcCCCCEEEECCCCcccCCeEEEEc
Confidence 33344689999999999999999999999986 676432 677 578999999999999999999999999999999
Q ss_pred ceeeecccccCcCcccccCCC---CceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHH
Q 001896 483 TSYVNESMVTGEAVPVLKEIN---SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFV 559 (998)
Q Consensus 483 ~~~Vdes~LTGEs~pv~k~~g---~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (998)
.+.||||+|||||.|+.|++| +.||+||.+.+|.++++|+++|.+|+++|+.+++++++.+|+|+|.....+...
T Consensus 147 ~~~VDESaLTGES~PV~K~~g~d~~~V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~~~-- 224 (673)
T PRK14010 147 LATVDESAITGESAPVIKESGGDFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLLMT-- 224 (673)
T ss_pred ceEEecchhcCCCCceeccCCCccCeeecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHHHH--
Confidence 999999999999999999999 889999999999999999999999999999999999999999999654443322
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecch
Q 001896 560 PIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGD 639 (998)
Q Consensus 560 ~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~ 639 (998)
+.+.++++++|++... . ..++...+.+.+++++.++||+|+..+|++...++.+|+|+|+++|+++
T Consensus 225 ---l~ii~l~~~~~~~~~~--~---------~~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~gvLvk~~~ 290 (673)
T PRK14010 225 ---LTIIFLVVILTMYPLA--K---------FLNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQFNILAKSGR 290 (673)
T ss_pred ---HhHHHHHHHHHHHHHH--h---------hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCEEEeCcH
Confidence 2222222222222100 0 0124445667778888889999999999999999999999999999999
Q ss_pred HHHhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHhhccCCChHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 001896 640 ALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQS 719 (998)
Q Consensus 640 ~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~~~~l~~~~~~~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~ 719 (998)
++|++|++|++|||||||||+|++.+.++.+.++.+.++++..++.++..+.||+++|+++++++.+.....
T Consensus 291 avE~lg~v~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~~a~~~~~~s~~P~~~AIv~~a~~~~~~~~~-------- 362 (673)
T PRK14010 291 SVETCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFERLVKAAYESSIADDTPEGRSIVKLAYKQHIDLPQ-------- 362 (673)
T ss_pred HHHHhhCCCEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCCCchh--------
Confidence 999999999999999999999998888887777777788888888888899999999999999875421000
Q ss_pred cccccCCCcccccccceeee-cCCeEEEEEcCeEEEEeeHhhhhh----cCCCCChhhHHHHHHHHHcCCeEEEEEECCe
Q 001896 720 HSKESTGSGWLLDVSDFSAL-PGRGIQCFISGKQVLVGNRKLLNE----SGITIPDHVESFVVELEESARTGILVAYDDN 794 (998)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~-~g~gi~~~~~g~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~ 794 (998)
...+..+|... .++|+. ++|+.+.+|+++++.+ .+...+.++++..+++.++|+++++++.|++
T Consensus 363 ---------~~~~~~pF~~~~k~~gv~--~~g~~i~kGa~~~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~v~~~~~ 431 (673)
T PRK14010 363 ---------EVGEYIPFTAETRMSGVK--FTTREVYKGAPNSMVKRVKEAGGHIPVDLDALVKGVSKKGGTPLVVLEDNE 431 (673)
T ss_pred ---------hhcceeccccccceeEEE--ECCEEEEECCHHHHHHHhhhcCCCCchHHHHHHHHHHhCCCeEEEEEECCE
Confidence 00111233322 245553 5788888999998742 3444555566667778889999999999999
Q ss_pred EEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhcCCEEEEEcC
Q 001896 795 LIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGD 874 (998)
Q Consensus 795 ~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGD 874 (998)
++|+++++|++||+++++|++||++|++++|+|||++.+|.++|+++||+++|++++|+||.++|+.+|++|+.|+|+||
T Consensus 432 ~lG~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~G~~VaMtGD 511 (673)
T PRK14010 432 ILGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAKGHIVAMTGD 511 (673)
T ss_pred EEEEEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhCCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001896 875 GINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVI 941 (998)
Q Consensus 875 g~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~ 941 (998)
|+||+|||++||||||||+|++.++++||++++++|++.+++++++||+++.|+++.+.|.++.|+.
T Consensus 512 GvNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~ls~Iv~av~~gR~i~~n~~~~~~f~~~~~~~ 578 (673)
T PRK14010 512 GTNDAPALAEANVGLAMNSGTMSAKEAANLIDLDSNPTKLMEVVLIGKQLLMTRGSLTTFSIANDIA 578 (673)
T ss_pred ChhhHHHHHhCCEEEEeCCCCHHHHHhCCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHheeeeccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998875
No 10
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=1.2e-84 Score=764.68 Aligned_cols=517 Identities=27% Similarity=0.391 Sum_probs=438.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC-eEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEE
Q 001896 401 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIV 479 (998)
Q Consensus 401 ~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~-~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~v 479 (998)
...+++.++++.++|.+++.|+++.+++|.++.|. +++++ |+|+ ++++|++++|+|||+|+|++||+||+||+|
T Consensus 69 ~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vi---r~g~--~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~v 143 (679)
T PRK01122 69 TLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKL---REPG--AAEEVPATELRKGDIVLVEAGEIIPADGEV 143 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE---ECCC--EEEEEEHHHcCCCCEEEEcCCCEEEEEEEE
Confidence 45566667899999999999999999999999886 68888 6663 378999999999999999999999999999
Q ss_pred EecceeeecccccCcCcccccCCCCc---eecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 001896 480 VWGTSYVNESMVTGEAVPVLKEINSP---VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVAS 556 (998)
Q Consensus 480 l~G~~~Vdes~LTGEs~pv~k~~g~~---v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 556 (998)
++|.+.||||+|||||.|+.|++|+. ||+||.|.+|.++++|+++|.+|+++|+.+++++++.+|+|+|...+.+..
T Consensus 144 ieG~a~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l~~ 223 (679)
T PRK01122 144 IEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTILLA 223 (679)
T ss_pred EEccEEEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999999999999999988777766
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEe
Q 001896 557 IFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIK 636 (998)
Q Consensus 557 ~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilvk 636 (998)
++..+++++++..+.++++.+ .. .++.+++++++++|||+|+.++|.....++.+++|+|+++|
T Consensus 224 ~l~~i~l~~~~~~~~~~~~~g--------------~~--~~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~gvLvk 287 (679)
T PRK01122 224 GLTIIFLLVVATLPPFAAYSG--------------GA--LSITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQANVIAT 287 (679)
T ss_pred hhhHHHHHHHHHHHHHHHHhC--------------ch--HHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcCCeeec
Confidence 665444433322222211110 11 26788899999999999999999999999999999999999
Q ss_pred cchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHhhccCCChHHHHHHHHHHhc-CCCCCCCCCC
Q 001896 637 GGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHF-HFFDDPSLNP 715 (998)
Q Consensus 637 ~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~~~~l~~~~~~~~~~~hp~~~ai~~~~~~~-~~~~~~~~~~ 715 (998)
+++++|++|++|++|||||||||+|++.+.++++.++.+.++++.+++.++..+.||.++|+++++++. +... ...
T Consensus 288 ~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~a~~~s~~s~hP~~~AIv~~a~~~~~~~~-~~~-- 364 (679)
T PRK01122 288 SGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPGVTEEELADAAQLSSLADETPEGRSIVVLAKQRFNLRE-RDL-- 364 (679)
T ss_pred CchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHHHHHHhcCCCCCchHHHHHHHHHhhcCCCc-hhh--
Confidence 999999999999999999999999999999999888888889999999999999999999999998762 2100 000
Q ss_pred CCCCcccccCCCcccccccceeeecC-CeEEEEEcCeEEEEeeHhh----hhhcCCCCChhhHHHHHHHHHcCCeEEEEE
Q 001896 716 DGQSHSKESTGSGWLLDVSDFSALPG-RGIQCFISGKQVLVGNRKL----LNESGITIPDHVESFVVELEESARTGILVA 790 (998)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~gi~~~~~g~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~i~va 790 (998)
.....+..+|+...+ .|+ .++|+.+.+|+++. +.+.+...|.++++..+++.++|.++++++
T Consensus 365 -----------~~~~~~~~pF~s~~~~~gv--~~~g~~~~kGa~e~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~va 431 (679)
T PRK01122 365 -----------QSLHATFVPFSAQTRMSGV--DLDGREIRKGAVDAIRRYVESNGGHFPAELDAAVDEVARKGGTPLVVA 431 (679)
T ss_pred -----------ccccceeEeecCcCceEEE--EECCEEEEECCHHHHHHHHHhcCCcChHHHHHHHHHHHhCCCcEEEEE
Confidence 000112233444332 232 35788899999864 444566667777777788899999999999
Q ss_pred ECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhcCCEEE
Q 001896 791 YDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVA 870 (998)
Q Consensus 791 ~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~ 870 (998)
+|++++|++.++|++||++++++++||++|++++|+|||++.+|.++|+++||++++++++|+||.++|+.+|++|+.|+
T Consensus 432 ~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~PedK~~iV~~lQ~~G~~Va 511 (679)
T PRK01122 432 EDNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPEDKLALIRQEQAEGRLVA 511 (679)
T ss_pred ECCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHHHHHHHHHHHHcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Q 001896 871 MVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVI-----AIPI 945 (998)
Q Consensus 871 ~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~-----~i~~ 945 (998)
|+|||+||+|||++||||||||+|++.++++||++++++|++.+++++++||++.-+--....|+++ |-+ -+|.
T Consensus 512 MtGDGvNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~~s~Iv~av~~GR~~~~tr~~~~~f~~~-n~~~~~~~i~p~ 590 (679)
T PRK01122 512 MTGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVEIGKQLLMTRGALTTFSIA-NDVAKYFAIIPA 590 (679)
T ss_pred EECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHhhhHhhhhhhHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998443333556655 432 3444
Q ss_pred HhhhccccCC
Q 001896 946 AAGVFFPSLG 955 (998)
Q Consensus 946 a~g~~~~~~g 955 (998)
.+...+|-++
T Consensus 591 ~~~~~~~~~~ 600 (679)
T PRK01122 591 MFAATYPQLN 600 (679)
T ss_pred HHHhhCcccc
Confidence 4444556443
No 11
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=7.9e-84 Score=793.52 Aligned_cols=517 Identities=23% Similarity=0.291 Sum_probs=435.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcc---eeEEEEeCCCCCCCCEEEEcCCCc
Q 001896 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC---IEEREIDALLIQSGDTLKVLPGTK 472 (998)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~---~~~~~i~~~~l~~GDii~v~~G~~ 472 (998)
.|. .+++++++++++.+++.++++|+.+.+++|.++.+.+++|+ |||+. .++++|++++|+|||+|.|++||+
T Consensus 121 ~~~-~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~Vi---R~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~ 196 (902)
T PRK10517 121 DLF-AAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL---RVINDKGENGWLEIPIDQLVPGDIIKLAAGDM 196 (902)
T ss_pred cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE---ECCccCCCCeEEEEEHHhCCCCCEEEECCCCE
Confidence 344 45677788889999999999999999999999999999998 66310 157899999999999999999999
Q ss_pred ccccEEEEecce-eeecccccCcCcccccCCCC-------------ceecceeeeeceEEEEEEEecChhHHHHHHHHHH
Q 001896 473 LPADGIVVWGTS-YVNESMVTGEAVPVLKEINS-------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVE 538 (998)
Q Consensus 473 iPaDg~vl~G~~-~Vdes~LTGEs~pv~k~~g~-------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~ 538 (998)
|||||+|++|+. .||||+|||||.|+.|.+++ .+|+||.+.+|+++++|++||.+|++|+|.++++
T Consensus 197 IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~v~ 276 (902)
T PRK10517 197 IPADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVS 276 (902)
T ss_pred EeeeEEEEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHHhh
Confidence 999999999975 79999999999999998874 6999999999999999999999999999999999
Q ss_pred HhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHH
Q 001896 539 TAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATP 618 (998)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p 618 (998)
+++.+++|+|+.++++++++++++++++.++++++.+.. .+|..++.+++++++++|||+|+++++
T Consensus 277 ~~~~~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~~--------------~~~~~~l~~alsv~V~~~Pe~LP~~vt 342 (902)
T PRK10517 277 EQDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTK--------------GDWWEAALFALSVAVGLTPEMLPMIVT 342 (902)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhc--------------CCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 988899999999999999999988888877776654331 257788999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHhh---ccCCChHH
Q 001896 619 TAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAE---ASSEHPLA 695 (998)
Q Consensus 619 ~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~~~~l~~~~~~~---~~~~hp~~ 695 (998)
+++..+..+|+|+|+++|+++++|+||++|+||||||||||+|+|+|.++....+.+.++++.+++..+ ....||++
T Consensus 343 ~~la~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~~~~~~~~ll~~a~l~~~~~~~~~~p~d 422 (902)
T PRK10517 343 STLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNLLD 422 (902)
T ss_pred HHHHHHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEecCCCCCHHHHHHHHHhcCCcCCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999986555556677777665422 34579999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeeecCCeEEEEEc---Ce--EEEEeeHhhhhhc------
Q 001896 696 KAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFIS---GK--QVLVGNRKLLNES------ 764 (998)
Q Consensus 696 ~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~---g~--~~~~g~~~~~~~~------ 764 (998)
.|++++++..... .. ..... .....+|++.. +++...++ +. .+..|+++.+.+.
T Consensus 423 ~All~~a~~~~~~---~~-~~~~~----------~~~~~pFds~~-k~msvvv~~~~~~~~~~~KGa~e~il~~c~~~~~ 487 (902)
T PRK10517 423 TAVLEGVDEESAR---SL-ASRWQ----------KIDEIPFDFER-RRMSVVVAENTEHHQLICKGALEEILNVCSQVRH 487 (902)
T ss_pred HHHHHHHHhcchh---hh-hhcCc----------eEEEeeeCCCc-ceEEEEEEECCCeEEEEEeCchHHHHHhchhhhc
Confidence 9999988653200 00 00000 00011222211 22222221 21 3445666654321
Q ss_pred -CC--CCCh----hhHHHHHHHHHcCCeEEEEEE----------------CCeEEEEEEecCCCcHhHHHHHHHHHhCCC
Q 001896 765 -GI--TIPD----HVESFVVELEESARTGILVAY----------------DDNLIGVMGIADPVKREAAVVVEGLLKMGV 821 (998)
Q Consensus 765 -~~--~~~~----~~~~~~~~~~~~g~~~i~va~----------------~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi 821 (998)
+. ++.+ .+.+..+++..+|++++++|| |++++|+++|+||+||+++++|++|+++|+
T Consensus 488 ~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~e~~l~~lGli~~~Dp~R~~a~~aI~~l~~aGI 567 (902)
T PRK10517 488 NGEIVPLDDIMLRRIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGV 567 (902)
T ss_pred CCCeecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCccccccccccccCceeeehHhhhCcchhhHHHHHHHHHHCCC
Confidence 21 1222 233445667889999999997 458999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHhCcc-------------------------eEEEecCcccHHHHHHHHhhcCCEEEEEcCCC
Q 001896 822 RPVMVTGDNWRTAHAVAREIGIQ-------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGI 876 (998)
Q Consensus 822 ~~~i~tgd~~~~a~~ia~~~gi~-------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ 876 (998)
+++|+|||+..+|.++|+++||+ .+|+|++|+||.++|+.||++|+.|+|+|||+
T Consensus 568 ~v~miTGD~~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~G~vVam~GDGv 647 (902)
T PRK10517 568 TVKILTGDSELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARLTPMHKERIVTLLKREGHVVGFMGDGI 647 (902)
T ss_pred EEEEEcCCCHHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHHHHHHHHHHCCCEEEEECCCc
Confidence 99999999999999999999997 79999999999999999999999999999999
Q ss_pred CCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001896 877 NDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPI 945 (998)
Q Consensus 877 nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~ 945 (998)
||+|||++||||||||+|+|+++++||+|+++++|..+++++++||++++||++++.|.++.|+..+..
T Consensus 648 NDaPALk~ADVGIAmg~gtdvAkeaADiVLldd~~~~I~~ai~~gR~i~~nI~k~i~~~ls~n~~~v~~ 716 (902)
T PRK10517 648 NDAPALRAADIGISVDGAVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVFS 716 (902)
T ss_pred chHHHHHhCCEEEEeCCcCHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999865543
No 12
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=4.9e-83 Score=787.79 Aligned_cols=509 Identities=22% Similarity=0.298 Sum_probs=433.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecC------CCcceeEEEEeCCCCCCCCEEEEcCCCcc
Q 001896 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK------VGKCIEEREIDALLIQSGDTLKVLPGTKL 473 (998)
Q Consensus 400 ~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r------~g~~~~~~~i~~~~l~~GDii~v~~G~~i 473 (998)
.+++++++++++.+++.++++|+++.+++|.++.+.+++|+ | || ++++|++++|+|||+|.+++||+|
T Consensus 90 ~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~---R~~~~~~dg---~~~~I~~~eLv~GDiV~l~~Gd~V 163 (867)
T TIGR01524 90 ATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVL---RVINENGNG---SMDEVPIDALVPGDLIELAAGDII 163 (867)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEE---EecccCCCC---eEEEEEhhcCCCCCEEEECCCCEE
Confidence 35667777778888888999888899999999999999998 5 77 579999999999999999999999
Q ss_pred cccEEEEecce-eeecccccCcCcccccCCCC-------------ceecceeeeeceEEEEEEEecChhHHHHHHHHHHH
Q 001896 474 PADGIVVWGTS-YVNESMVTGEAVPVLKEINS-------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVET 539 (998)
Q Consensus 474 PaDg~vl~G~~-~Vdes~LTGEs~pv~k~~g~-------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~ 539 (998)
||||+|++|+. .||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|++||.+|++|++.+++++
T Consensus 164 PaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~ 243 (867)
T TIGR01524 164 PADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATE 243 (867)
T ss_pred cccEEEEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhC
Confidence 99999999985 79999999999999998875 59999999999999999999999999999999988
Q ss_pred hhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHH
Q 001896 540 AQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPT 619 (998)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~ 619 (998)
+.+++|+|+.++++++++.+++++++.+++++|++.. .+|..++.+++++++++|||+|++++++
T Consensus 244 -~~~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~al~l~v~~iP~~Lp~~vt~ 308 (867)
T TIGR01524 244 -RRGQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMK--------------GDWLEAFLFALAVAVGLTPEMLPMIVSS 308 (867)
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHHHHHheehHHHhc--------------CCHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 7778999999999999999999888887777654421 2577889999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHH---hhccCCChHHH
Q 001896 620 AVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVAS---AEASSEHPLAK 696 (998)
Q Consensus 620 ~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~~~~l~~~~~---~~~~~~hp~~~ 696 (998)
++..+..+|+|+|+++|++.++|+||++|+||||||||||+|+|+|.+++..++.+.++++.+++. .+..+.||++.
T Consensus 309 ~la~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~~~~~~~~~l~~a~l~~~~~~~~~~p~~~ 388 (867)
T TIGR01524 309 NLAKGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDSSGETSERVLKMAWLNSYFQTGWKNVLDH 388 (867)
T ss_pred HHHHHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEecCCCCCHHHHHHHHHHhCCCCCCCCChHHH
Confidence 999999999999999999999999999999999999999999999999876666667777776653 22345799999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeeecCCeEEEEEcC-----eEEEEeeHhhhhhcC------
Q 001896 697 AVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISG-----KQVLVGNRKLLNESG------ 765 (998)
Q Consensus 697 ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g-----~~~~~g~~~~~~~~~------ 765 (998)
|+++++...... ...... ......+|++. ++++...+++ ..+..|+++.+.+.+
T Consensus 389 Al~~~~~~~~~~----~~~~~~----------~~~~~~pF~s~-~k~ms~~v~~~~~~~~~~~KGa~e~il~~c~~~~~~ 453 (867)
T TIGR01524 389 AVLAKLDESAAR----QTASRW----------KKVDEIPFDFD-RRRLSVVVENRAEVTRLICKGAVEEMLTVCTHKRFG 453 (867)
T ss_pred HHHHHHHhhchh----hHhhcC----------ceEEEeccCCC-cCEEEEEEEcCCceEEEEEeCcHHHHHHhchhhhcC
Confidence 999988653100 000000 00011122222 3444444432 135567777654321
Q ss_pred -C--CCC----hhhHHHHHHHHHcCCeEEEEEE-------------C---CeEEEEEEecCCCcHhHHHHHHHHHhCCCE
Q 001896 766 -I--TIP----DHVESFVVELEESARTGILVAY-------------D---DNLIGVMGIADPVKREAAVVVEGLLKMGVR 822 (998)
Q Consensus 766 -~--~~~----~~~~~~~~~~~~~g~~~i~va~-------------~---~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~ 822 (998)
. .++ +.+++..+++..+|+|++++|+ + .+++|+++|+||+||+++++|++||++|++
T Consensus 454 ~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~~~~aI~~l~~aGI~ 533 (867)
T TIGR01524 454 GAVVTLSESEKSELQDMTAEMNRQGIRVIAVATKTLKVGEADFTKTDEEQLIIEGFLGFLDPPKESTKEAIAALFKNGIN 533 (867)
T ss_pred CceecCCHHHHHHHHHHHHHHHhcCCEEEEEEEeccCcccccccccccCCcEEEEEEEeeCCCchhHHHHHHHHHHCCCE
Confidence 1 111 2344555678889999999998 2 379999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHhCcc-------------------------eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCC
Q 001896 823 PVMVTGDNWRTAHAVAREIGIQ-------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGIN 877 (998)
Q Consensus 823 ~~i~tgd~~~~a~~ia~~~gi~-------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~n 877 (998)
++|+|||+..+|.++|+++||. ++|+|++|+||.++|+.+|++|+.|+|+|||+|
T Consensus 534 vvmiTGD~~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGvN 613 (867)
T TIGR01524 534 VKVLTGDNEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGIN 613 (867)
T ss_pred EEEEcCCCHHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHHHHHHHHhCCCEEEEECCCcc
Confidence 9999999999999999999997 799999999999999999999999999999999
Q ss_pred CHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001896 878 DSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIP 944 (998)
Q Consensus 878 D~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~ 944 (998)
|+|||++||||||||+|+++++++||+++++++|+.++.++++||++++||++|+.|.++.|+..+.
T Consensus 614 DapALk~AdVGIAmg~gtdvAk~aADiVLldd~~~~I~~ai~~gR~i~~ni~k~i~~~ls~n~~~~~ 680 (867)
T TIGR01524 614 DAPALRKADVGISVDTAADIAKEASDIILLEKSLMVLEEGVIEGRNTFGNILKYLKMTASSNFGNVF 680 (867)
T ss_pred cHHHHHhCCEEEEeCCccHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988875543
No 13
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=5.2e-82 Score=740.29 Aligned_cols=508 Identities=28% Similarity=0.404 Sum_probs=434.9
Q ss_pred chhhhHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCe-EEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCc
Q 001896 396 TYFETSA--MLITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTK 472 (998)
Q Consensus 396 ~~~~~~~--~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~-~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~ 472 (998)
.||+.++ .+++.++++.++|.+++.|+++.+++|.++.|++ +++++ +|| ++++|++++|+|||+|+|++||+
T Consensus 63 ~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr--~dg---~~~~V~~~~L~~GDiV~V~~Gd~ 137 (675)
T TIGR01497 63 ALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLR--DDG---AIDKVPADQLKKGDIVLVEAGDV 137 (675)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEe--eCC---EEEEEEHHHCCCCCEEEECCCCE
Confidence 4666543 3344467999999999999999999999998875 76762 367 57999999999999999999999
Q ss_pred ccccEEEEecceeeecccccCcCcccccCCCCc---eecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHH
Q 001896 473 LPADGIVVWGTSYVNESMVTGEAVPVLKEINSP---VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQK 549 (998)
Q Consensus 473 iPaDg~vl~G~~~Vdes~LTGEs~pv~k~~g~~---v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~ 549 (998)
||+||+|++|.+.||||+|||||.|+.|++|+. ||+||.+.+|.++++|+++|.+|+++|+.+++++++.+|+|+|.
T Consensus 138 IPaDG~vieG~~~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~ 217 (675)
T TIGR01497 138 IPCDGEVIEGVASVDESAITGESAPVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEI 217 (675)
T ss_pred EeeeEEEEEccEEEEcccccCCCCceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHH
Confidence 999999999999999999999999999999985 99999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHH
Q 001896 550 FADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGA 629 (998)
Q Consensus 550 ~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~ 629 (998)
..+.+..++..+++ ++. +.+|.+..+ . ....++.+++++++++|||+|+...|.....++.+++
T Consensus 218 ~l~~l~~~l~~v~l-i~~--~~~~~~~~~-~------------~~~~~~~~lvallV~aiP~aLg~l~~av~iag~~r~a 281 (675)
T TIGR01497 218 ALTILLIALTLVFL-LVT--ATLWPFAAY-G------------GNAISVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVL 281 (675)
T ss_pred HHHHHHHHHHHHHH-HHH--HHHHHHHHh-c------------ChhHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHH
Confidence 77776655443332 222 222332211 0 1123577789999999999999888888889999999
Q ss_pred hcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHhhccCCChHHHHHHHHHHhcCCCC
Q 001896 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFD 709 (998)
Q Consensus 630 k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~~~~l~~~~~~~~~~~hp~~~ai~~~~~~~~~~~ 709 (998)
|+|+++|+++++|++|++|++|||||||||+|+|++.++++.++.+.++++.+++.++..++||.++|+++++++.+...
T Consensus 282 r~gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~aa~~~~~s~hP~a~Aiv~~a~~~~~~~ 361 (675)
T TIGR01497 282 GFNVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQGVDEKTLADAAQLASLADDTPEGKSIVILAKQLGIRE 361 (675)
T ss_pred HCCeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999998754211
Q ss_pred CCCCCCCCCCcccccCCCcccccccceeeecCCeEEE--EEcCeEEEEeeHhhh----hhcCCCCChhhHHHHHHHHHcC
Q 001896 710 DPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQC--FISGKQVLVGNRKLL----NESGITIPDHVESFVVELEESA 783 (998)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~--~~~g~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~g 783 (998)
.. . .....+..+|.... ++.+ ..+|+.+.+|+++.+ .+++...|.++++..+++.++|
T Consensus 362 ~~-~-------------~~~~~~~~pf~~~~--~~sg~~~~~g~~~~kGa~e~i~~~~~~~g~~~~~~~~~~~~~~a~~G 425 (675)
T TIGR01497 362 DD-V-------------QSLHATFVEFTAQT--RMSGINLDNGRMIRKGAVDAIKRHVEANGGHIPTDLDQAVDQVARQG 425 (675)
T ss_pred cc-c-------------ccccceEEEEcCCC--cEEEEEEeCCeEEEECCHHHHHHHHHhcCCCCcHHHHHHHHHHHhCC
Confidence 00 0 00011222333332 3333 247889999998544 4556666777777778889999
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHh
Q 001896 784 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQ 863 (998)
Q Consensus 784 ~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~ 863 (998)
.+++++++|++++|++.++|++||++++++++||++|++++|+|||+..+|.++|+++|+++++++++|++|.++|+.+|
T Consensus 426 ~r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~~PedK~~~v~~lq 505 (675)
T TIGR01497 426 GTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEATPEDKIALIRQEQ 505 (675)
T ss_pred CeEEEEEECCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001896 864 KDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 940 (998)
Q Consensus 864 ~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~ 940 (998)
++|+.|+|+|||.||+|||++|||||+||++++.++++||++++++|++.+++++++||+++-+......|+++-++
T Consensus 506 ~~g~~VamvGDG~NDapAL~~AdvGiAm~~gt~~akeaadivLldd~~s~Iv~av~~GR~~~~t~~~~~t~~~~~~~ 582 (675)
T TIGR01497 506 AEGKLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDLDSDPTKLIEVVHIGKQLLITRGALTTFSIANDV 582 (675)
T ss_pred HcCCeEEEECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEECCCCHHHHHHHHHHHHHHHHHHHHHheeeecccH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888876544
No 14
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=1.6e-82 Score=783.56 Aligned_cols=516 Identities=23% Similarity=0.318 Sum_probs=428.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCc---ceeEEEEeCCCCCCCCEEEEcCCCc
Q 001896 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGK---CIEEREIDALLIQSGDTLKVLPGTK 472 (998)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~---~~~~~~i~~~~l~~GDii~v~~G~~ 472 (998)
+|.+ +++++++++++.+++.++++|+.+.+++|.++.+.+++|+ |||+ ..++++|++++|+|||+|.|++||+
T Consensus 110 ~~~~-~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~---Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~ 185 (903)
T PRK15122 110 DLTG-VIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVL---RRGHAGAEPVRREIPMRELVPGDIVHLSAGDM 185 (903)
T ss_pred cHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEE---ECCccCCCCeEEEEEHHHCCCCCEEEECCCCE
Confidence 4444 5667777888999999999999999999999999999998 5531 0157899999999999999999999
Q ss_pred ccccEEEEecce-eeecccccCcCcccccCC-----------------------CCceecceeeeeceEEEEEEEecChh
Q 001896 473 LPADGIVVWGTS-YVNESMVTGEAVPVLKEI-----------------------NSPVIGGTINLHGVLHIQATKVGSDA 528 (998)
Q Consensus 473 iPaDg~vl~G~~-~Vdes~LTGEs~pv~k~~-----------------------g~~v~aGt~~~~g~~~~~v~~~g~~t 528 (998)
|||||+|++|+. .||||+|||||.|+.|.+ ++.+|+||.+.+|+++++|++||.+|
T Consensus 186 IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T 265 (903)
T PRK15122 186 IPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRT 265 (903)
T ss_pred EeeeEEEEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEecccc
Confidence 999999999986 699999999999999975 36799999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhh
Q 001896 529 VLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA 608 (998)
Q Consensus 529 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~ 608 (998)
++|+|.+++.+ ...++|+|+..+++.+++..+.+.++.+.+++.++. ..+|..++.+++++++++
T Consensus 266 ~~gkI~~~v~~-~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~--------------~~~~~~~l~~aisl~V~~ 330 (903)
T PRK15122 266 YFGSLAKSIVG-TRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFT--------------KGDWLEALLFALAVAVGL 330 (903)
T ss_pred HhhHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--------------cCCHHHHHHHHHHHHHHH
Confidence 99999999987 557789999999999988777666655544432221 135788899999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHh--
Q 001896 609 CPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASA-- 686 (998)
Q Consensus 609 ~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~~~~l~~~~~~-- 686 (998)
|||+|++++|+++..+..+|+|+|+++|+++++|+||++|+||||||||||+|+|+|.+++..++.+.++++.+++..
T Consensus 331 ~Pe~Lp~~vt~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~~~~~~~~~l~~a~l~s~ 410 (903)
T PRK15122 331 TPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDVSGRKDERVLQLAWLNSF 410 (903)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcCCCCChHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999998877666667777766532
Q ss_pred -hccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeeecCC-eEEEEE-cCeEEE--EeeHhhh
Q 001896 687 -EASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGR-GIQCFI-SGKQVL--VGNRKLL 761 (998)
Q Consensus 687 -~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-gi~~~~-~g~~~~--~g~~~~~ 761 (998)
+..+.||++.|+++++.+.+.... .... ......+|.+..++ ++.... +|+.+. .|+++.+
T Consensus 411 ~~~~~~~p~e~All~~a~~~~~~~~----~~~~----------~~~~~~pF~s~~k~ms~v~~~~~~~~~~~~KGa~e~i 476 (903)
T PRK15122 411 HQSGMKNLMDQAVVAFAEGNPEIVK----PAGY----------RKVDELPFDFVRRRLSVVVEDAQGQHLLICKGAVEEM 476 (903)
T ss_pred CCCCCCChHHHHHHHHHHHcCchhh----hhcC----------ceEEEeeeCCCcCEEEEEEEcCCCcEEEEECCcHHHH
Confidence 344679999999999877532100 0000 00011122222221 111111 344333 3877754
Q ss_pred hh-------cCC--CCCh----hhHHHHHHHHHcCCeEEEEEE------------------CCeEEEEEEecCCCcHhHH
Q 001896 762 NE-------SGI--TIPD----HVESFVVELEESARTGILVAY------------------DDNLIGVMGIADPVKREAA 810 (998)
Q Consensus 762 ~~-------~~~--~~~~----~~~~~~~~~~~~g~~~i~va~------------------~~~~lG~i~l~d~~r~~~~ 810 (998)
.+ ++. ++++ .+.+..+++..+|+|++++|| |++++|+++++||+||+++
T Consensus 477 l~~c~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~a~ 556 (903)
T PRK15122 477 LAVATHVRDGDTVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGGESRAQYSTADERDLVIRGFLTFLDPPKESAA 556 (903)
T ss_pred HHhchhhhcCCCeecCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccCccccccccccccccCcEEEEEEeccCccHHHHH
Confidence 32 121 2222 234445677889999999996 3489999999999999999
Q ss_pred HHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc-------------------------eEEEecCcccHHHHHHHHhhc
Q 001896 811 VVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-------------------------DVMADVMPAGKADAVRSFQKD 865 (998)
Q Consensus 811 ~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~-------------------------~~~~~~~p~~K~~~v~~l~~~ 865 (998)
++|++||++|++++|+|||+..+|.++|+++||. ++|+|++|+||.++|+.||++
T Consensus 557 ~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~ 636 (903)
T PRK15122 557 PAIAALRENGVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRVLKALQAN 636 (903)
T ss_pred HHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999997 799999999999999999999
Q ss_pred CCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001896 866 GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIP 944 (998)
Q Consensus 866 g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~ 944 (998)
|+.|+|+|||+||+|||++||||||||+|+++++++||+|+++|+|+.++.++++||++++||++++.|.++.|+..+.
T Consensus 637 G~vVamtGDGvNDaPALk~ADVGIAmg~gtdvAkeaADiVLldd~f~~Iv~ai~~gR~i~~nI~k~i~~~ls~n~~~~~ 715 (903)
T PRK15122 637 GHTVGFLGDGINDAPALRDADVGISVDSGADIAKESADIILLEKSLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNVF 715 (903)
T ss_pred CCEEEEECCCchhHHHHHhCCEEEEeCcccHHHHHhcCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876543
No 15
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=5.1e-80 Score=770.97 Aligned_cols=563 Identities=24% Similarity=0.333 Sum_probs=436.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc-CCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCccc
Q 001896 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVEL-APATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLP 474 (998)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~-~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iP 474 (998)
.|++. ..+++.+++.-.+..+++.++++.++++.+. .+.+++|+ ||| ++++|++++|+|||+|.|++||+||
T Consensus 127 ~~~~~-~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~Vi---RdG---~~~~I~~~~Lv~GDiV~l~~Gd~IP 199 (941)
T TIGR01517 127 GWIEG-VAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVI---RGG---QEQQISIHDIVVGDIVSLSTGDVVP 199 (941)
T ss_pred chHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEE---ECC---EEEEEeHHHCCCCCEEEECCCCEec
Confidence 45553 3333334444455555555666666677653 46678888 888 6799999999999999999999999
Q ss_pred ccEEEEec-ceeeecccccCcCcccccCCCCc--eecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHH
Q 001896 475 ADGIVVWG-TSYVNESMVTGEAVPVLKEINSP--VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 551 (998)
Q Consensus 475 aDg~vl~G-~~~Vdes~LTGEs~pv~k~~g~~--v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~ 551 (998)
|||+|++| ++.||||+|||||.|+.|.+|+. +|+||.+.+|.++++|++||.+|++|++.+++++++ +++|+|+.+
T Consensus 200 aD~~li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~-~~t~l~~~~ 278 (941)
T TIGR01517 200 ADGVFISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEG-EDTPLQEKL 278 (941)
T ss_pred ccEEEEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCC-CCCcHHHHH
Confidence 99999999 78899999999999999998877 999999999999999999999999999999998765 678999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCc--ccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHH
Q 001896 552 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQ--WLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGA 629 (998)
Q Consensus 552 ~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~ 629 (998)
+++++++.+++++++++.|++|++......+... .......++..++.+++++++++|||+|++++|+++..++.+|+
T Consensus 279 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~ma 358 (941)
T TIGR01517 279 SELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMM 358 (941)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999998888888776542111100000 00001235778899999999999999999999999999999999
Q ss_pred hcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCC-C-----------HHHHHHHHHHhhc---------
Q 001896 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM-D-----------RGEFLTLVASAEA--------- 688 (998)
Q Consensus 630 k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~-~-----------~~~~l~~~~~~~~--------- 688 (998)
|+|+++|+++++|+||++|+||||||||||+|+|+|.+++..++. + ..+++..+..+..
T Consensus 359 k~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~ 438 (941)
T TIGR01517 359 KDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQRFNVRDVLRNVPKHVRNILVEGISLNSSSEEVVDRG 438 (941)
T ss_pred hCCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEecceEecCcccccCCHHHHHHHHHHHHhCCCCccccCCC
Confidence 999999999999999999999999999999999999998764321 0 1122222222111
Q ss_pred ----cCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeee-cCCeEEEEEcCe---EEEEeeHhh
Q 001896 689 ----SSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSAL-PGRGIQCFISGK---QVLVGNRKL 760 (998)
Q Consensus 689 ----~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~gi~~~~~g~---~~~~g~~~~ 760 (998)
...+|++.|+++++++.+..... . .. ........+|++. .++++....++. .+..|+++.
T Consensus 439 ~~~~~~g~p~e~All~~~~~~~~~~~~-~-~~----------~~~~~~~~pF~s~~k~msvv~~~~~~~~~~~~KGA~e~ 506 (941)
T TIGR01517 439 GKRAFIGSKTECALLGFLLLLGRDYQE-V-RA----------EEKVVKIYPFNSERKFMSVVVKHSGGKVREFRKGASEI 506 (941)
T ss_pred CccccCCCccHHHHHHHHHHcCCCHHH-H-Hh----------hchhccccccCCCCCeEEEEEEeCCCcEEEEEECChHH
Confidence 12568899999998765421000 0 00 0001112233332 222333332221 223344433
Q ss_pred hh--------hcCCCCC-----hhhHHHHHHHHHcCCeEEEEEE----------------CCeEEEEEEecCCCcHhHHH
Q 001896 761 LN--------ESGITIP-----DHVESFVVELEESARTGILVAY----------------DDNLIGVMGIADPVKREAAV 811 (998)
Q Consensus 761 ~~--------~~~~~~~-----~~~~~~~~~~~~~g~~~i~va~----------------~~~~lG~i~l~d~~r~~~~~ 811 (998)
+. .+|...+ +.+++..+++..+|+|++++|| |++++|+++++|++||++++
T Consensus 507 il~~c~~~~~~~g~~~~~~~~~~~i~~~~~~~a~~G~Rvl~~A~~~~~~~~~~~~~~~e~~l~~lGli~~~Dplr~~~~~ 586 (941)
T TIGR01517 507 VLKPCRKRLDSNGEATPISDDKDRCADVIEPLASDALRTICLAYRDFAPEEFPRKDYPNGGLTLIGVVGIKDPLRPGVRE 586 (941)
T ss_pred HHHhhhHHhhcCCCcccCcHHHHHHHHHHHHHHhcCCEEEEEEEEecCccccccccccccCcEEEEEeeccCCCchhHHH
Confidence 32 2232211 2345566778899999999997 23899999999999999999
Q ss_pred HHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc---------------------------eEEEecCcccHHHHHHHHhh
Q 001896 812 VVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---------------------------DVMADVMPAGKADAVRSFQK 864 (998)
Q Consensus 812 ~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~---------------------------~~~~~~~p~~K~~~v~~l~~ 864 (998)
+|++||++|++++|+|||+..+|.++|+++||. .+|+|++|+||.++|+.+|+
T Consensus 587 aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~~iV~~lq~ 666 (941)
T TIGR01517 587 AVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQLLVLMLKD 666 (941)
T ss_pred HHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 69999999999999999999
Q ss_pred cCCEEEEEcCCCCCHHHHhcCCeEEEec-CchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001896 865 DGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAI 943 (998)
Q Consensus 865 ~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i 943 (998)
+|+.|+|+|||+||+|||++|||||||| +|++.++++||+++++++|+.+++++++||++++++++|+.|++++|+..+
T Consensus 667 ~g~vVam~GDGvNDapALk~AdVGIAmg~~gtdvAk~aADivL~dd~f~~I~~~i~~gR~~~~ni~k~i~~~l~~n~~~i 746 (941)
T TIGR01517 667 MGEVVAVTGDGTNDAPALKLADVGFSMGISGTEVAKEASDIILLDDNFASIVRAVKWGRNVYDNIRKFLQFQLTVNVVAV 746 (941)
T ss_pred CCCEEEEECCCCchHHHHHhCCcceecCCCccHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999988
Q ss_pred HHHh-hhccccCCCCccHHHHHHHhhhhhHHHhhhccccc
Q 001896 944 PIAA-GVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLR 982 (998)
Q Consensus 944 ~~a~-g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~ 982 (998)
++++ |.++ +. -.|+-+.-+..+.-+...+.++.|.
T Consensus 747 ~~~~~~~~~---~~-~~pl~~~qil~inl~~d~~~al~l~ 782 (941)
T TIGR01517 747 ILTFVGSCI---SS-TSPLTAVQLLWVNLIMDTLAALALA 782 (941)
T ss_pred HHHHHHHHH---hc-cccHHHHHHHHHHHHHHHhhHHHHc
Confidence 8775 3332 11 1355555555555566666666654
No 16
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=6.1e-80 Score=765.67 Aligned_cols=539 Identities=25% Similarity=0.355 Sum_probs=430.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEecc-ee
Q 001896 407 FVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGT-SY 485 (998)
Q Consensus 407 ~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~-~~ 485 (998)
++++...+..++++|+.+.+++|.++.|.+++|+ ||| ++++|+++||+|||+|.|++||+|||||+|++|+ ..
T Consensus 89 ~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~Vi---Rdg---~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~~l~ 162 (884)
T TIGR01522 89 AILIVVTVGFVQEYRSEKSLEALNKLVPPECHLI---REG---KLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLS 162 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE---ECC---EEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcCceE
Confidence 3334445555566677888999999999999999 888 6799999999999999999999999999999996 78
Q ss_pred eecccccCcCcccccCCCC--------------ceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHH
Q 001896 486 VNESMVTGEAVPVLKEINS--------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 551 (998)
Q Consensus 486 Vdes~LTGEs~pv~k~~g~--------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~ 551 (998)
||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|++||.+|.+|++.+++++++.+++|+|+.+
T Consensus 163 VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~kt~lq~~l 242 (884)
T TIGR01522 163 IDESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPKTPLQKSM 242 (884)
T ss_pred EEcccccCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCCCCCCcHHHHH
Confidence 9999999999999998864 79999999999999999999999999999999999888999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhc
Q 001896 552 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANN 631 (998)
Q Consensus 552 ~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~ 631 (998)
+++++++++++++++++.++++++. ..+|..++.+++++++++|||+|++++|+++..++++|+|+
T Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ak~ 308 (884)
T TIGR01522 243 DLLGKQLSLVSFGVIGVICLVGWFQ--------------GKDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKK 308 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------------cCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhhc
Confidence 9999999887766655555543322 13577889999999999999999999999999999999999
Q ss_pred CcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCC----------------------------HHHHHHHH
Q 001896 632 GVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD----------------------------RGEFLTLV 683 (998)
Q Consensus 632 gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~----------------------------~~~~l~~~ 683 (998)
|+++|+++++|+||++|+||||||||||+|+|+|.+++..++.. ..+++..+
T Consensus 309 ~ilvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (884)
T TIGR01522 309 RAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYTVAVSRILEAG 388 (884)
T ss_pred CCcccchHHHHhccCccEEEecCccccccCeEEEEEEEecCceEeeccCCccCCCCcccccccccccccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999987643210 12344333
Q ss_pred HHhhcc---------CCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeeec-----------CCe
Q 001896 684 ASAEAS---------SEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALP-----------GRG 743 (998)
Q Consensus 684 ~~~~~~---------~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~g 743 (998)
+.+... ..+|++.|+++++++.+..... .... .....+|++.. +.+
T Consensus 389 ~l~~~~~~~~~~~~~~g~p~e~All~~~~~~~~~~~~----~~~~----------~~~~~pF~s~~k~m~v~~~~~~~~~ 454 (884)
T TIGR01522 389 NLCNNAKFRNEADTLLGNPTDVALIELLMKFGLDDLR----ETYI----------RVAEVPFSSERKWMAVKCVHRQDRS 454 (884)
T ss_pred hhhCCCeecCCCCCcCCChHHHHHHHHHHHcCcHhHH----hhCc----------EEeEeCCCCCCCeEEEEEEEcCCCe
Confidence 322211 1359999999999876431100 0000 00111121111 122
Q ss_pred EEEEEcCe--EEEEeeHhhhhhcCCC--CCh----hhHHHHHHHHHcCCeEEEEEECC-----eEEEEEEecCCCcHhHH
Q 001896 744 IQCFISGK--QVLVGNRKLLNESGIT--IPD----HVESFVVELEESARTGILVAYDD-----NLIGVMGIADPVKREAA 810 (998)
Q Consensus 744 i~~~~~g~--~~~~g~~~~~~~~~~~--~~~----~~~~~~~~~~~~g~~~i~va~~~-----~~lG~i~l~d~~r~~~~ 810 (998)
...++||. .+..++..++...|.. +++ .+.+..+++.++|++++++||+. +++|+++++|++||+++
T Consensus 455 ~~~~~KGape~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~G~rvl~~A~~~~~~~l~~lGli~l~Dp~r~~~~ 534 (884)
T TIGR01522 455 EMCFMKGAYEQVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAEMASAGLRVIAFASGPEKGQLTFLGLVGINDPPRPGVK 534 (884)
T ss_pred EEEEEeCChHHHHHhhhhhhhcCCCeeeCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCCeEEEEEEeccCcchhHHH
Confidence 33444443 1111222222222322 222 23445567888999999999975 89999999999999999
Q ss_pred HHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc---------------------------eEEEecCcccHHHHHHHHh
Q 001896 811 VVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---------------------------DVMADVMPAGKADAVRSFQ 863 (998)
Q Consensus 811 ~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~---------------------------~~~~~~~p~~K~~~v~~l~ 863 (998)
++|+.||++|++++|+|||+..+|.++|+++|+. .+|+|++|++|.++|+.+|
T Consensus 535 ~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~~iv~~lq 614 (884)
T TIGR01522 535 EAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQ 614 (884)
T ss_pred HHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 4999999999999999999
Q ss_pred hcCCEEEEEcCCCCCHHHHhcCCeEEEec-CchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001896 864 KDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIA 942 (998)
Q Consensus 864 ~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~ 942 (998)
+.|+.|+|+|||.||+|||++|||||+|| ++++.++++||+++++++++.++.++++||++++|+++|+.|+++.|+..
T Consensus 615 ~~g~~v~mvGDGvND~pAl~~AdVGia~g~~g~~va~~aaDivl~dd~~~~i~~~i~~gR~~~~ni~k~i~~~l~~ni~~ 694 (884)
T TIGR01522 615 KRGDVVAMTGDGVNDAPALKLADIGVAMGQTGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIKNFITFQLSTSVAA 694 (884)
T ss_pred HCCCEEEEECCCcccHHHHHhCCeeEecCCCcCHHHHHhcCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999 68999999999999999999999999999999999999999999999987
Q ss_pred HHHHh-hhccccCCCCccHHHHHHHhhhhhHHHhhhcccccc
Q 001896 943 IPIAA-GVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRR 983 (998)
Q Consensus 943 i~~a~-g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~ 983 (998)
+.+.+ +.++ +. ..|+.+.-++.+.-+...+.++.|..
T Consensus 695 ~~~~~~~~~~---~~-~~pl~~~qiL~inl~~d~~~a~~l~~ 732 (884)
T TIGR01522 695 LSLIALATLM---GF-PNPLNAMQILWINILMDGPPAQSLGV 732 (884)
T ss_pred HHHHHHHHHH---cC-CCchhHHHHHHHHHHHHhhHHHHhcc
Confidence 75543 2222 22 23445545555555556665555543
No 17
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-80 Score=692.31 Aligned_cols=561 Identities=25% Similarity=0.367 Sum_probs=430.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEe
Q 001896 402 AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVW 481 (998)
Q Consensus 402 ~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~ 481 (998)
..+.+.+++...+..++++++.+++++|.++.|+.+.|+ |+| +.+.+++.+|||||||.++-||+||||.+|++
T Consensus 82 ~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~---R~g---k~~~i~A~eLVPGDiV~l~vGDkVPADlRl~e 155 (972)
T KOG0202|consen 82 FVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVL---RSG---KLQHILARELVPGDIVELKVGDKIPADLRLIE 155 (972)
T ss_pred eeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEE---ecC---cccceehhccCCCCEEEEecCCccccceeEEe
Confidence 333344444444555566677789999999999999999 888 46999999999999999999999999999999
Q ss_pred ccee-eecccccCcCcccccCC--------------CCceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCCh
Q 001896 482 GTSY-VNESMVTGEAVPVLKEI--------------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAP 546 (998)
Q Consensus 482 G~~~-Vdes~LTGEs~pv~k~~--------------g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~ 546 (998)
-..+ ||||.|||||.|+.|.. .+.+|+||.+..|.++++|+.||.+|.+|+|.+.+++.+.+|+|
T Consensus 156 ~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~e~~kTP 235 (972)
T KOG0202|consen 156 AKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQATESPKTP 235 (972)
T ss_pred eeeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhccCCCCCc
Confidence 7765 99999999999999943 24689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC--CCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHH
Q 001896 547 IQKFADFVASIFVPIVVTLALFTWLCWYVAGVLG--AYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVA 624 (998)
Q Consensus 547 ~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~ 624 (998)
+|+..|.+.+.+.-++.++++.+++.- .+++. .....|+ ..+...|.+++++.+.++|++|+..++++++.|
T Consensus 236 Lqk~ld~~G~qLs~~is~i~v~v~~~n--ig~f~~p~~~g~~f----k~~~~~f~IaVsLAVAAIPEGLPaVvT~tLALG 309 (972)
T KOG0202|consen 236 LQKKLDEFGKQLSKVISFICVGVWLLN--IGHFLDPVHGGSWF----KGALYYFKIAVSLAVAAIPEGLPAVVTTTLALG 309 (972)
T ss_pred HHHHHHHHHHHHHHHheehhhhHHHhh--hhhhccccccccch----hchhhhhhHHHHHHHHhccCCCcchhhhhHHHh
Confidence 999999999998866555555444331 22211 0011222 356778999999999999999999999999999
Q ss_pred HHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCC------------------------------
Q 001896 625 TGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM------------------------------ 674 (998)
Q Consensus 625 ~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~------------------------------ 674 (998)
.++|+|++.++|.+.++|+||.++.||+|||||||+|+|.+.+++..++.
T Consensus 310 ~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~~~~~~~~~~f~~tg~ty~~~g~v~~~~~~~~~~ 389 (972)
T KOG0202|consen 310 TRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIPDGGTATVDEFNPTGTTYSPEGEVFKDGLYEKDK 389 (972)
T ss_pred HHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEecccccccccccccCCceeCCCCceEecCcccccc
Confidence 99999999999999999999999999999999999999999998865321
Q ss_pred --CHHHHHHHH---H-----Hhhcc-------CCChHHHHHHHHHHhcCCCCCC--CCCCCCCCcccccCCCccccc---
Q 001896 675 --DRGEFLTLV---A-----SAEAS-------SEHPLAKAVVEYARHFHFFDDP--SLNPDGQSHSKESTGSGWLLD--- 732 (998)
Q Consensus 675 --~~~~~l~~~---~-----~~~~~-------~~hp~~~ai~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--- 732 (998)
..+.+..++ + ..+++ ...|.+.|+...+++.+..+.. ...+...... +.+...
T Consensus 390 ~~~~~~l~~l~~i~~lCNda~v~~~~~~~~~~~G~pTE~AL~vlaeKm~l~~~~~~~~s~~~~~~c-----~~~~~~~~~ 464 (972)
T KOG0202|consen 390 AGDNDLLQELAEICALCNDATVEYNDADCYEKVGEPTEGALIVLAEKMGLPGTRSTNLSNEEASAC-----NRVYSRLFK 464 (972)
T ss_pred ccccHHHHHHHHHHHhhhhhhhhcCchhhHHhcCCchHHHHHHHHHHcCCCcchhhcccccccccc-----hhHHHHhhh
Confidence 011122221 1 12222 3579999999999998876644 1111111000 000000
Q ss_pred ---ccceeeec------------CCeEEEEEcCeEEEE-eeH-hhhhhcC---CCCC----hhhHHHHHHHHHcCCeEEE
Q 001896 733 ---VSDFSALP------------GRGIQCFISGKQVLV-GNR-KLLNESG---ITIP----DHVESFVVELEESARTGIL 788 (998)
Q Consensus 733 ---~~~~~~~~------------g~gi~~~~~g~~~~~-g~~-~~~~~~~---~~~~----~~~~~~~~~~~~~g~~~i~ 788 (998)
..+|.+.. .+|...++||....+ ..+ .+....| .++. +.+.+...++..+|.|+++
T Consensus 465 ~~~elpFssdrK~Msv~c~~~~~~~~~~~fvKGA~E~Vl~rcs~~~~~~g~~~~pLt~~~re~il~~~~~~g~~gLRvLa 544 (972)
T KOG0202|consen 465 KIAELPFSSDRKSMSVKCSPAHGQSGYKMFVKGAPESVLERCSTYYGSDGQTKVPLTQASRETILANVYEMGSEGLRVLA 544 (972)
T ss_pred heeEeecccccceEEEEEecCCCCccceEEecCChHHHHHhhhcEEccCCceeeeCcHHHHHHHHHHHHHHhhccceEEE
Confidence 01122111 123444555541111 111 1111112 1121 2244455678889999999
Q ss_pred EEE------------------------CCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc
Q 001896 789 VAY------------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 844 (998)
Q Consensus 789 va~------------------------~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~ 844 (998)
+|+ |++|+|++++.||||++++++|+.|+++|++|+|+|||+..||.+||+++|+.
T Consensus 545 lA~~~~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~ 624 (972)
T KOG0202|consen 545 LASKDSPGQVPDDQDLNDTSNRATAESDLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIF 624 (972)
T ss_pred EEccCCcccChhhhhhcccccccccccceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 986 46899999999999999999999999999999999999999999999999995
Q ss_pred -------------------------------eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEec-
Q 001896 845 -------------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG- 892 (998)
Q Consensus 845 -------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~- 892 (998)
.+|+|++|++|.++|+.||+.|+.|+|.|||+||+|||+.||+|||||
T Consensus 625 ~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~ 704 (972)
T KOG0202|consen 625 SEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGI 704 (972)
T ss_pred cCCccccccccchhhhhcCCHHHHHHHhhcceEEEecCchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecC
Confidence 399999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccccCCCCccHHHHHHHhhhhh
Q 001896 893 AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPI-AAGVFFPSLGIKLPPWAAGACMALSS 971 (998)
Q Consensus 893 ~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~-a~g~~~~~~g~~l~p~~a~~~m~~ss 971 (998)
+|++++|++||.||.+|||+.+..++++||.+|.|||+++.|.++.|+..+.+ +++.. +|+. .|+.+.-+....-
T Consensus 705 ~GTdVaKeAsDMVL~DDnFstIvaAVEEGr~IynNik~Fir~~lSsnVgev~~I~l~aa---~~~p-~pL~pvQiLWiNl 780 (972)
T KOG0202|consen 705 SGTDVAKEASDMVLADDNFSTIVAAVEEGRAIYNNIKNFIRYLLSSNVGEVVLIFLTAA---FGIP-EPLIPVQILWINL 780 (972)
T ss_pred CccHhhHhhhhcEEecCcHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hCCC-Ccccchhhheeee
Confidence 99999999999999999999999999999999999999999999999875432 22211 1222 3444444555555
Q ss_pred HHHhhhcccccc
Q 001896 972 VSVVCSSLLLRR 983 (998)
Q Consensus 972 ~~v~~~s~~l~~ 983 (998)
+.--+-+..|..
T Consensus 781 vtDG~PA~aLG~ 792 (972)
T KOG0202|consen 781 VTDGPPATALGF 792 (972)
T ss_pred eccCCchhhcCC
Confidence 555555555543
No 18
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-79 Score=686.78 Aligned_cols=603 Identities=25% Similarity=0.356 Sum_probs=477.0
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchhhhHHHHHHHHH--HHHHHHHHHHhHHHHH
Q 001896 348 KRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVL--FGKYLEILAKGKTSDA 425 (998)
Q Consensus 348 ~~~~~~~~~~l~~~~~~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~e~~~~~k~~~~ 425 (998)
..|++..|++++.. +|+.|... | ++++.+++..++...+|++.+++++.+++ +-..+.+|.+.++-+.
T Consensus 143 K~Fl~fvweA~qD~-----TLiIL~va-A----vvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~ 212 (1034)
T KOG0204|consen 143 KGFLRFVWEALQDV-----TLIILMVA-A----VVSLGLGIYTPGIEDGWIEGVAILLSVILVVLVTAVNDYRQELQFRK 212 (1034)
T ss_pred ccHHHHHHHHhccc-----hHHHHHHH-H----HHHHhhhhccCCCCcccccchhheeeEEEEEEEeecchhHHhhhhhh
Confidence 45667778888765 34444321 1 22344455555666789998877766442 2334455554444444
Q ss_pred HHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEeccee-eecccccCcCcccccCC--
Q 001896 426 IKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLKEI-- 502 (998)
Q Consensus 426 l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~~~-Vdes~LTGEs~pv~k~~-- 502 (998)
+++. ....+..|+ |+| +.++|++.||++|||+.++.||.|||||++++|+.+ +|||++||||.++.|..
T Consensus 213 L~~~--k~~~k~~Vi---R~G---~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~ 284 (1034)
T KOG0204|consen 213 LQKE--KRNIKFQVI---RGG---RRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDK 284 (1034)
T ss_pred hhhh--hhceEEEEE---ECC---EEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCcceeccCCC
Confidence 4432 223456677 888 689999999999999999999999999999999765 99999999999999976
Q ss_pred CCceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 001896 503 NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAY 582 (998)
Q Consensus 503 g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~ 582 (998)
+..+++||.+.+|.+++.|+.+|.+|..|++...+.+...+++|+|-.+++++...-.+.+.+|++++++..+....+.+
T Consensus 285 dPfLlSGTkv~eGsgkMlVTaVGmnt~wG~~m~~l~~~~~e~tpLQ~kL~~lA~~Igk~Gl~~A~~~~~VL~~r~~~~~~ 364 (1034)
T KOG0204|consen 285 DPFLLSGTKVMEGSGKMLVTAVGMNTQWGIIMTLLGAGGEEETPLQVKLNGLATQIGKIGLLFAALTFIVLVIRFFIGKT 364 (1034)
T ss_pred CCeEeecceeecCcceEEEEEeeecchHhhHHHhhhcCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheee
Confidence 55799999999999999999999999999999999999989999999999999999889888888888876554433322
Q ss_pred C------CcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCC
Q 001896 583 P------EQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTG 656 (998)
Q Consensus 583 ~------~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTG 656 (998)
. ..|.+.....+...|.+++.++++++|++||+|+++++++++++|.+.+.++|++.++|++|..++||.||||
T Consensus 365 ~~~~~~~~~~~~~~~~~~v~~f~i~VTilVVAVPEGLPLAVTLsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKTG 444 (1034)
T KOG0204|consen 365 KIEGGTGTTWSDEYIQEFVKFFIIAVTILVVAVPEGLPLAVTLSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDKTG 444 (1034)
T ss_pred ecCCCCCccccHHHHHHHHHHhhheeEEEEEECCCCccHHHHHHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecCcC
Confidence 1 2344444556888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceEEEEEEecCCCCH----------HHHHHH-HHHh-----------------hccCCChHHHHHHHHHHhcCCC
Q 001896 657 TLTQGRATVTTAKVFTKMDR----------GEFLTL-VASA-----------------EASSEHPLAKAVVEYARHFHFF 708 (998)
Q Consensus 657 TLT~~~~~v~~i~~~~~~~~----------~~~l~~-~~~~-----------------~~~~~hp~~~ai~~~~~~~~~~ 708 (998)
|||+|+|+|.+.+..++... ..+..+ ..++ .....+|.++|++.+..++|-.
T Consensus 445 TLT~N~MtVV~~~~~~~~~k~~~~~~~~l~~~~~~ll~~gI~~Nt~g~v~~~~~~g~~~~~~GspTE~AlL~f~~~LG~~ 524 (1034)
T KOG0204|consen 445 TLTTNRMTVVQSYIGSEHYKVNSPKSSNLPPSLLDLLLQGIAQNTTGSVVKPEKGGEQPEQLGSPTECALLGFGLKLGMD 524 (1034)
T ss_pred ceEeeeEEEEeeeeccccccccCcccccCCHHHHHHHHHHHhhcCCCeEEecCCCCcCccccCCHHHHHHHHHHHHhCcc
Confidence 99999999999877543221 122222 1222 1224689999999999887531
Q ss_pred CCCCCCCCCCCcccccCCCcccccccceeeecC----------CeEEEEEcCe-EEEEeeHhh-hhhcCCC--C----Ch
Q 001896 709 DDPSLNPDGQSHSKESTGSGWLLDVSDFSALPG----------RGIQCFISGK-QVLVGNRKL-LNESGIT--I----PD 770 (998)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~gi~~~~~g~-~~~~g~~~~-~~~~~~~--~----~~ 770 (998)
..... ....+..+..|.+..+ .|-..++||. ++.+.+++. +..+|.. + ..
T Consensus 525 -~~~~R-----------~e~~v~kv~~FNS~kK~~gvvi~~~~~~~y~~~KGAsEiVL~~C~~~~~~~g~~~~~~e~~~~ 592 (1034)
T KOG0204|consen 525 -FQDVR-----------PEEKVVKVYPFNSVKKRMGVVIKLPDGGHYVHWKGASEIVLKSCEYYIDSNGELVPFNEDDRK 592 (1034)
T ss_pred -hHhhc-----------chhheeEEeccCcccceeeEEEEcCCCCeEEEEcChHHHHHHhhhheECCCCCEeeCCHHHHH
Confidence 00000 0122334444444332 2312666665 222333332 2223321 1 12
Q ss_pred hhHHHHHHHHHcCCeEEEEEE---------------------CCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCC
Q 001896 771 HVESFVVELEESARTGILVAY---------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGD 829 (998)
Q Consensus 771 ~~~~~~~~~~~~g~~~i~va~---------------------~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd 829 (998)
.+++.++.+..+|.|++++|| +.+++|+++++||+|||++++|+.|+++|+.|.|+|||
T Consensus 593 ~~~~~Ie~mA~~~LRti~lAy~df~~~~~~~~~~~~~~~~~~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTGD 672 (1034)
T KOG0204|consen 593 SFKDVIEPMASEGLRTICLAYRDFVAGPDEEPSWDNEELPEGGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTGD 672 (1034)
T ss_pred HHHHHHHHHHHhhhheeeEEeeccccCCCCCCCccccccCCCCeEEEEEeeccCCCCCCcHHHHHHHHHcCcEEEEEeCC
Confidence 356677889999999999999 23799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCcc-----------------------------eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHH
Q 001896 830 NWRTAHAVAREIGIQ-----------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSP 880 (998)
Q Consensus 830 ~~~~a~~ia~~~gi~-----------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~ 880 (998)
|-.||++||.+|||. ++++|.+|.||.-+|+.|++.|+.|+..|||.||+|
T Consensus 673 NI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~DK~lLVk~L~~~g~VVAVTGDGTNDaP 752 (1034)
T KOG0204|consen 673 NINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPNDKHLLVKGLIKQGEVVAVTGDGTNDAP 752 (1034)
T ss_pred cHHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCchHHHHHHHHHhcCcEEEEecCCCCCch
Confidence 999999999999995 499999999999999999999999999999999999
Q ss_pred HHhcCCeEEEec-CchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCCCc
Q 001896 881 ALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAA-GVFFPSLGIKL 958 (998)
Q Consensus 881 al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~-g~~~~~~g~~l 958 (998)
||+.||||.||| .|+++|||+||+|+++|||+++++++.|||..|.+|+++++|+++.|++++.+++ +... .| =
T Consensus 753 ALkeADVGlAMGIaGTeVAKEaSDIIi~DDNFssIVk~v~WGR~VY~nIqKFiQFQLTVNVvAliv~fv~A~~--~~--d 828 (1034)
T KOG0204|consen 753 ALKEADVGLAMGIAGTEVAKEASDIIILDDNFSSIVKAVKWGRNVYDNIQKFLQFQLTVNVVALIVNFVSACA--TG--D 828 (1034)
T ss_pred hhhhcccchhccccchhhhhhhCCeEEEcCchHHHHHHHHhhhHHHHHHHHhheeEEEEEEEeehhhhhhhhh--cC--C
Confidence 999999999999 8999999999999999999999999999999999999999999999999888776 2211 12 4
Q ss_pred cHHHHHHHhhhhhHHHhhhccccccc
Q 001896 959 PPWAAGACMALSSVSVVCSSLLLRRY 984 (998)
Q Consensus 959 ~p~~a~~~m~~ss~~v~~~s~~l~~~ 984 (998)
.|+-|.-+....-|+-.|-||.|.-.
T Consensus 829 sPLtAVQlLWVNLIMDTLgALALATe 854 (1034)
T KOG0204|consen 829 SPLTAVQLLWVNLIMDTLGALALATE 854 (1034)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccC
Confidence 79999999999999999999988754
No 19
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-77 Score=740.38 Aligned_cols=546 Identities=27% Similarity=0.374 Sum_probs=441.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEecce-e
Q 001896 407 FVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTS-Y 485 (998)
Q Consensus 407 ~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~~-~ 485 (998)
+++++..+...++.|+.+.+++|.++.+.++.|+ ||| ++++|+++||+|||+|.+++||+||||++|+++++ .
T Consensus 112 ~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~---R~g---~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~l~ 185 (917)
T COG0474 112 VVVINALLGFVQEYRAEKALEALKKMSSPKAKVL---RDG---KFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLE 185 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEE---eCC---cEEEecHHHCCCCcEEEECCCCccccceEEEEecCce
Confidence 3334444445555667778888888889999999 888 68999999999999999999999999999999998 7
Q ss_pred eecccccCcCcccccCC--------------CCceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHH
Q 001896 486 VNESMVTGEAVPVLKEI--------------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 551 (998)
Q Consensus 486 Vdes~LTGEs~pv~k~~--------------g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~ 551 (998)
||||+|||||.|+.|.+ .+.+|+||.+.+|.+.++|++||.+|..|++...+......++|+|+..
T Consensus 186 VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~l~~~l 265 (917)
T COG0474 186 VDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTPLQRKL 265 (917)
T ss_pred EEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCCcHHHHH
Confidence 99999999999999952 4778999999999999999999999999999999998877899999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhc
Q 001896 552 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANN 631 (998)
Q Consensus 552 ~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~ 631 (998)
+++..++..+.++++++.|+..++.+. ..|..++.+++++++.++|++|++.+.++++.+..+|+|+
T Consensus 266 ~~~~~~l~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~mak~ 332 (917)
T COG0474 266 NKLGKFLLVLALVLGALVFVVGLFRGG-------------NGLLESFLTALALAVAAVPEGLPAVVTIALALGAQRMAKD 332 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-------------ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988887644321 2378899999999999999999999999999999999999
Q ss_pred CcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecC-CCCHH-----------HHHHHHHH---hhcc------C
Q 001896 632 GVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFT-KMDRG-----------EFLTLVAS---AEAS------S 690 (998)
Q Consensus 632 gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~-~~~~~-----------~~l~~~~~---~~~~------~ 690 (998)
++++|+++++|+||++|+||+|||||||+|+|+|.+++..+ ..+.+ +++..++. .... .
T Consensus 333 ~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lc~~~~~~~~~~~~~ 412 (917)
T COG0474 333 NAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDIDDKDLKDSPALLRFLLAAALCNSVTPEKNGWYQA 412 (917)
T ss_pred cchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCCCcccccccccccchHHHHHHHHHHhcCcccccccCceec
Confidence 99999999999999999999999999999999999999884 22111 12221111 1222 5
Q ss_pred CChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeeecCCe-EEEE-EcCe--EEEEeeHhhhhhc--
Q 001896 691 EHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRG-IQCF-ISGK--QVLVGNRKLLNES-- 764 (998)
Q Consensus 691 ~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-i~~~-~~g~--~~~~g~~~~~~~~-- 764 (998)
.+|.+.|+++++++.++.. ....... ...+....+|.+..++. +... -+|+ .+..|+++.+.+.
T Consensus 413 gdptE~Al~~~a~~~~~~~----~~~~~~~------~~~~~~~~PFdS~rKrMsviv~~~~~~~~~~~KGApe~il~~~~ 482 (917)
T COG0474 413 GDPTEGALVEFAEKLGFSL----DLSGLEV------EYPILAEIPFDSERKRMSVIVKTDEGKYILFVKGAPEVILERCK 482 (917)
T ss_pred CCccHHHHHHHHHhcCCcC----CHHHHhh------hcceeEEecCCCCceEEEEEEEcCCCcEEEEEcCChHHHHHHhc
Confidence 6999999999999876421 0000000 00112223444443322 1111 1121 3445677765431
Q ss_pred ----CCC----CChhhHHHHHHHHHcCCeEEEEEE-----------------CCeEEEEEEecCCCcHhHHHHHHHHHhC
Q 001896 765 ----GIT----IPDHVESFVVELEESARTGILVAY-----------------DDNLIGVMGIADPVKREAAVVVEGLLKM 819 (998)
Q Consensus 765 ----~~~----~~~~~~~~~~~~~~~g~~~i~va~-----------------~~~~lG~i~l~d~~r~~~~~~i~~l~~~ 819 (998)
..+ .+..+++..+++.++|+|++++|| |..++|+++++||+|++++++|+.|+++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~la~~glRvla~A~k~~~~~~~~~~~~~~E~dl~~lGl~g~~Dppr~~v~~aI~~l~~A 562 (917)
T COG0474 483 SIGELEPLTEEGLRTLEEAVKELASEGLRVLAVAYKKLDRAEKDDEVDEIESDLVFLGLTGIEDPPREDVKEAIEELREA 562 (917)
T ss_pred ccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhhhhccceeehhhhccCCCCccHHHHHHHHHHC
Confidence 111 224566677889999999998887 3689999999999999999999999999
Q ss_pred CCEEEEEcCCCHHHHHHHHHHhCcc-----------------------------eEEEecCcccHHHHHHHHhhcCCEEE
Q 001896 820 GVRPVMVTGDNWRTAHAVAREIGIQ-----------------------------DVMADVMPAGKADAVRSFQKDGSIVA 870 (998)
Q Consensus 820 gi~~~i~tgd~~~~a~~ia~~~gi~-----------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~ 870 (998)
||+++|+|||+..||.+||+++|+. .+|+|++|+||.++|+.+|++|+.|+
T Consensus 563 GI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~qK~~IV~~lq~~g~vVa 642 (917)
T COG0474 563 GIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQKARIVEALQKSGHVVA 642 (917)
T ss_pred CCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999999999974 49999999999999999999999999
Q ss_pred EEcCCCCCHHHHhcCCeEEEec-CchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Q 001896 871 MVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIA-AG 948 (998)
Q Consensus 871 ~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a-~g 948 (998)
|+|||.||+||||+|||||+|| +|+++++++||+++.++++..+..++.+||+++.|+++.+.|.+..|+..+.+. .+
T Consensus 643 mtGDGvNDapALk~ADVGIamg~~Gtdaak~Aadivl~dd~~~~i~~av~eGR~~~~ni~k~i~~~l~~n~~~~~~~~~~ 722 (917)
T COG0474 643 MTGDGVNDAPALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAVVEGRRVYVNIKKFILYLLSKNVGEVLTLLIY 722 (917)
T ss_pred EeCCCchhHHHHHhcCccEEecccHHHHHHhhcceEeecCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 699999999999999999999999999999999999999999999999854433 23
Q ss_pred hccccCCCCccHHHHHHHhhhhhHHHhhhccccccc
Q 001896 949 VFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRY 984 (998)
Q Consensus 949 ~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~ 984 (998)
.++ +....|+.+.-++...-+.-.+.++.|...
T Consensus 723 ~~~---~~~~~p~~~~qll~inll~d~~pa~~L~~~ 755 (917)
T COG0474 723 SLF---NLFFLPLTPLQLLWINLLTDSLPALALGVE 755 (917)
T ss_pred HHH---hcccccHHHHHHHHHHHHHhhhhhheeecC
Confidence 222 211345666666666666666666655444
No 20
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=9.3e-76 Score=734.07 Aligned_cols=550 Identities=22% Similarity=0.306 Sum_probs=443.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCccccc
Q 001896 397 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 476 (998)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD 476 (998)
+|..+++++++++++.++..+++.|+.+.++++.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+||||
T Consensus 103 ~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~Vi---Rdg---~~~~I~~~~lv~GDiv~l~~Gd~IPaD 176 (997)
T TIGR01106 103 NLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVI---RDG---EKMSINAEQVVVGDLVEVKGGDRIPAD 176 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE---ECC---EEEEeeHHHCCCCCEEEECCCCEEeee
Confidence 33345567777778888899999999999999999999999999 888 679999999999999999999999999
Q ss_pred EEEEecc-eeeecccccCcCcccccCCCC----------ceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCC
Q 001896 477 GIVVWGT-SYVNESMVTGEAVPVLKEINS----------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKA 545 (998)
Q Consensus 477 g~vl~G~-~~Vdes~LTGEs~pv~k~~g~----------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~ 545 (998)
|+|++|+ +.||||+|||||.|+.|.+++ .+|+||.+.+|.+.++|++||.+|.+|++.+++++++.+++
T Consensus 177 ~~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 256 (997)
T TIGR01106 177 LRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASGLENGKT 256 (997)
T ss_pred EEEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhhcccCCC
Confidence 9999997 579999999999999998874 69999999999999999999999999999999998888899
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHH
Q 001896 546 PIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVAT 625 (998)
Q Consensus 546 ~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~ 625 (998)
|+|+..+++.+++++++++++++.++++++.+ .+|..++.+++++++++|||+|++++++++..+.
T Consensus 257 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~ 322 (997)
T TIGR01106 257 PIAIEIEHFIHIITGVAVFLGVSFFILSLILG--------------YTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTA 322 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 99999999999999998888887777665432 2467788899999999999999999999999999
Q ss_pred HHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCC--------------CC-----HHHHHHHHHHh
Q 001896 626 GVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK--------------MD-----RGEFLTLVASA 686 (998)
Q Consensus 626 ~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~--------------~~-----~~~~l~~~~~~ 686 (998)
.+|+++|+++|+++++|+||++|+||||||||||+|+|+|.+++..+. .+ .++++.+++.+
T Consensus 323 ~~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~alc 402 (997)
T TIGR01106 323 KRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLC 402 (997)
T ss_pred HHHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEECCeEEecCCccCCCCccCCcccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999875321 01 11344444433
Q ss_pred hc----------------cCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeeecCCeEEEEEc-
Q 001896 687 EA----------------SSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFIS- 749 (998)
Q Consensus 687 ~~----------------~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~- 749 (998)
.. ...+|.+.|+++++.+.+.... .... ........+|++..++.......
T Consensus 403 n~~~~~~~~~~~~~~~~~~~gdp~E~ALl~~a~~~~~~~~--~~~~----------~~~~v~~~pF~s~rK~m~~v~~~~ 470 (997)
T TIGR01106 403 NRAVFKAGQENVPILKRAVAGDASESALLKCIELCLGSVM--EMRE----------RNPKVVEIPFNSTNKYQLSIHENE 470 (997)
T ss_pred CCCeeccccCCCcccccccCcChHHHHHHHHHHHhCCCHH--HHHh----------hCceeEEeccCCCCceEEEEEecc
Confidence 21 1257999999999875421000 0000 00111123344333332222110
Q ss_pred ---C-e--EEEEeeHhhhhh-------cCCC--CCh----hhHHHHHHHHHcCCeEEEEEE-------------------
Q 001896 750 ---G-K--QVLVGNRKLLNE-------SGIT--IPD----HVESFVVELEESARTGILVAY------------------- 791 (998)
Q Consensus 750 ---g-~--~~~~g~~~~~~~-------~~~~--~~~----~~~~~~~~~~~~g~~~i~va~------------------- 791 (998)
+ + .+..|+++.+.+ +|.. +++ .+.+...++..+|+|++++||
T Consensus 471 ~~~~~~~~~~~KGApe~Il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~GlRvla~A~k~l~~~~~~~~~~~~~~~~ 550 (997)
T TIGR01106 471 DPRDPRHLLVMKGAPERILERCSSILIHGKEQPLDEELKEAFQNAYLELGGLGERVLGFCHLYLPDEQFPEGFQFDTDDV 550 (997)
T ss_pred CCCCceEEEEEeCChHHHHHHhhHHhcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEEeecCcccccccccccchhh
Confidence 1 1 244566665433 2222 222 244556678899999999886
Q ss_pred -----CCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc----------------------
Q 001896 792 -----DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---------------------- 844 (998)
Q Consensus 792 -----~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~---------------------- 844 (998)
|.+|+|+++++||+|++++++|++|+++|++++|+|||+..+|.++|+++|+.
T Consensus 551 ~~~e~~L~flGli~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~ 630 (997)
T TIGR01106 551 NFPTDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVN 630 (997)
T ss_pred hccccCcEEEEEEeccCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccc
Confidence 23599999999999999999999999999999999999999999999999982
Q ss_pred -------------------------------eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEec-
Q 001896 845 -------------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG- 892 (998)
Q Consensus 845 -------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~- 892 (998)
.+|+|++|+||.++|+.+|+.|+.|+|+|||.||+|||++||||||||
T Consensus 631 ~~~~~~~vi~G~~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~ 710 (997)
T TIGR01106 631 PRDAKACVVHGSDLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGI 710 (997)
T ss_pred cccccceEEEhHHhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCC
Confidence 199999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCCCccHHHHHHHhhhhh
Q 001896 893 AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAA-GVFFPSLGIKLPPWAAGACMALSS 971 (998)
Q Consensus 893 ~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~-g~~~~~~g~~l~p~~a~~~m~~ss 971 (998)
+|++.++++||+++++|+|+.+++++++||+++.|+++++.|.++.|+..+.+.+ +.+ ++.+ .|+.+.-++.+.-
T Consensus 711 ~G~~vak~aADivL~dd~f~~Iv~ai~~GR~i~~ni~k~i~~~l~~ni~~~~~~~~~~~---~~~~-~pl~~~qlL~inl 786 (997)
T TIGR01106 711 AGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFII---ANIP-LPLGTITILCIDL 786 (997)
T ss_pred cccHHHHHhhceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HcCc-chhHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999997765443 222 2322 3444444555555
Q ss_pred HHHhhhccccc
Q 001896 972 VSVVCSSLLLR 982 (998)
Q Consensus 972 ~~v~~~s~~l~ 982 (998)
+...+-++.|.
T Consensus 787 i~d~lp~~al~ 797 (997)
T TIGR01106 787 GTDMVPAISLA 797 (997)
T ss_pred HHHHHHHHHHh
Confidence 55555555554
No 21
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=6.4e-75 Score=723.29 Aligned_cols=561 Identities=22% Similarity=0.307 Sum_probs=433.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEE
Q 001896 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIV 479 (998)
Q Consensus 400 ~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~v 479 (998)
.+++++++++++..+..+++.|+.+.+++|.++.+.+++|+ ||| ++++|+++||||||+|.+++||+|||||+|
T Consensus 83 ~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~Vi---Rdg---~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rL 156 (1053)
T TIGR01523 83 EGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVI---RNG---KSDAIDSHDLVPGDICLLKTGDTIPADLRL 156 (1053)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE---eCC---eeeecCHhhCCCCCEEEECCCCEeeccEEE
Confidence 35677777788888999999999999999999999999999 888 579999999999999999999999999999
Q ss_pred Eecc-eeeecccccCcCcccccCCC---------------CceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhc-
Q 001896 480 VWGT-SYVNESMVTGEAVPVLKEIN---------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM- 542 (998)
Q Consensus 480 l~G~-~~Vdes~LTGEs~pv~k~~g---------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~- 542 (998)
++++ ..||||+|||||.||.|.+. +.+|+||.+.+|.++++|++||.+|.+|+|.+++.+...
T Consensus 157 i~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~~~~~~~~~ 236 (1053)
T TIGR01523 157 IETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGL 236 (1053)
T ss_pred EEeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHHHHhhhhhc
Confidence 9985 56999999999999999642 458999999999999999999999999999998865431
Q ss_pred ----------------------------------cCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccC
Q 001896 543 ----------------------------------SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLP 588 (998)
Q Consensus 543 ----------------------------------~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~ 588 (998)
.++|+|+.+++++.++..++++++++.|+...+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~~~~------------ 304 (1053)
T TIGR01523 237 FQRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKFD------------ 304 (1053)
T ss_pred cccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------
Confidence 2499999999999988877777777666532210
Q ss_pred CCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEE
Q 001896 589 ENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTA 668 (998)
Q Consensus 589 ~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i 668 (998)
.+...+.++++++++++|++|+..+.++++.+..+|+|+++++|++.++|+||.+++||+|||||||+|+|+|.++
T Consensus 305 ----~~~~~~~~av~l~Va~VPegLp~~vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i 380 (1053)
T TIGR01523 305 ----VDKEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQI 380 (1053)
T ss_pred ----hhHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEE
Confidence 1235667889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EecC-----------CCC---------------------------------------------H---HHHHHHHHHhh--
Q 001896 669 KVFT-----------KMD---------------------------------------------R---GEFLTLVASAE-- 687 (998)
Q Consensus 669 ~~~~-----------~~~---------------------------------------------~---~~~l~~~~~~~-- 687 (998)
+..+ +++ . .+++..++.+.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lcn~a 460 (1053)
T TIGR01523 381 WIPRFGTISIDNSDDAFNPNEGNVSGIPRFSPYEYSHNEAADQDILKEFKDELKEIDLPEDIDMDLFIKLLETAALANIA 460 (1053)
T ss_pred EEcCCceEEecCCCCCCCCcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHhccCC
Confidence 6431 000 0 11332222211
Q ss_pred -----------ccCCChHHHHHHHHHHhcCCCCCC-----CCCCC---C-----CCcccccCCCcccccccceeeecCCe
Q 001896 688 -----------ASSEHPLAKAVVEYARHFHFFDDP-----SLNPD---G-----QSHSKESTGSGWLLDVSDFSALPGRG 743 (998)
Q Consensus 688 -----------~~~~hp~~~ai~~~~~~~~~~~~~-----~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~g~g 743 (998)
....+|.+.|+++++.+.+..... ..... . ....+............+|++..++.
T Consensus 461 ~~~~~~~~~~~~~~GdptE~ALl~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pFds~rK~m 540 (1053)
T TIGR01523 461 TVFKDDATDCWKAHGDPTEIAIHVFAKKFDLPHNALTGEEDLLKSNENDQSSLSQHNEKPGSAQFEFIAEFPFDSEIKRM 540 (1053)
T ss_pred eeeccCCCCceeeCcCccHHHHHHHHHHcCCCcccccchhhhhhhccccccccccccccccccccceEEEeccCCCCCeE
Confidence 012589999999999876542100 00000 0 00000000011122223444444332
Q ss_pred EEEEE-c-Ce---EEEEeeHhhhhhc--------C---CCCC----hhhHHHHHHHHHcCCeEEEEEE------------
Q 001896 744 IQCFI-S-GK---QVLVGNRKLLNES--------G---ITIP----DHVESFVVELEESARTGILVAY------------ 791 (998)
Q Consensus 744 i~~~~-~-g~---~~~~g~~~~~~~~--------~---~~~~----~~~~~~~~~~~~~g~~~i~va~------------ 791 (998)
....- . |. .+..|+++.+.+. + .+++ +.+.+..+++..+|+|++++||
T Consensus 541 svv~~~~~~~~~~~~~KGApe~il~~c~~~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~GlRvLa~A~r~l~~~~~~~~~ 620 (1053)
T TIGR01523 541 ASIYEDNHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIANMESLAAEGLRVLAFASKSFDKADNNDDQ 620 (1053)
T ss_pred EEEEEeCCCCEEEEEEeCChHHHHHhhhHhhcCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEEEEEECCchhccchh
Confidence 22221 1 21 2345666655432 1 1122 2244556778999999999986
Q ss_pred -------------CCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc--------------
Q 001896 792 -------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-------------- 844 (998)
Q Consensus 792 -------------~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~-------------- 844 (998)
|..++|+++++||+|++++++|+.||++|++++|+|||+..+|.++|+++||.
T Consensus 621 ~~~~~~~~~~~e~~L~~~G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~ 700 (1053)
T TIGR01523 621 LKNETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDS 700 (1053)
T ss_pred hhccccchhhhccCCEEEEEEeeecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccc
Confidence 34699999999999999999999999999999999999999999999999994
Q ss_pred -----------------------eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEec-CchHHHHH
Q 001896 845 -----------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIE 900 (998)
Q Consensus 845 -----------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~ 900 (998)
.+|+|++|+||.++|+.+|++|+.|+|+|||.||+|||++|||||||| +|++.+++
T Consensus 701 ~vitG~~l~~l~~~~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt~vak~ 780 (1053)
T TIGR01523 701 MVMTGSQFDALSDEEVDDLKALCLVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGINGSDVAKD 780 (1053)
T ss_pred eeeehHHhhhcCHHHHHHHhhcCeEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCccHHHHH
Confidence 289999999999999999999999999999999999999999999999 89999999
Q ss_pred hcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcc-ccCCCCccHHHHHHHhhhhhHHHhhhc
Q 001896 901 AADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAA-GVFF-PSLGIKLPPWAAGACMALSSVSVVCSS 978 (998)
Q Consensus 901 ~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~-g~~~-~~~g~~l~p~~a~~~m~~ss~~v~~~s 978 (998)
+||+++++++|..+..++++||++++++++.+.|.++.|+..+.+.+ +.++ .+.|...-|+.+..+....-+.-.+-+
T Consensus 781 aADivl~dd~f~~I~~~i~~gR~~~~ni~k~i~y~l~~ni~~i~~~~~~~~~~~~~g~~~~Pl~~~qiL~inli~d~~pa 860 (1053)
T TIGR01523 781 ASDIVLSDDNFASILNAIEEGRRMFDNIMKFVLHLLAENVAEAILLIIGLAFRDENGKSVFPLSPVEILWCIMITSCFPA 860 (1053)
T ss_pred hcCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCCCcCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987665433 3322 122332224444444444444444555
Q ss_pred cccc
Q 001896 979 LLLR 982 (998)
Q Consensus 979 ~~l~ 982 (998)
+.|.
T Consensus 861 laL~ 864 (1053)
T TIGR01523 861 MGLG 864 (1053)
T ss_pred Hhhc
Confidence 5444
No 22
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=100.00 E-value=7.8e-76 Score=691.80 Aligned_cols=476 Identities=36% Similarity=0.545 Sum_probs=431.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh--cCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEec
Q 001896 405 ITFVLFGKYLEILAKGKTSDAIKKLVE--LAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482 (998)
Q Consensus 405 ~~~~~~~~~~e~~~~~k~~~~l~~l~~--~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G 482 (998)
+++++++.+++.++++++.+.++++.+ +.|.+++++ |+| +++|++++|+|||+|++++||+|||||+|++|
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~---r~g----~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g 75 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVL---RNG----WKEIPASDLVPGDIVLVKSGEIVPADGVLLSG 75 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEE---ECC----eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEc
Confidence 345678899999999999999999998 889999998 666 58899999999999999999999999999999
Q ss_pred ceeeecccccCcCcccccCCCCceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHH-HhHHHH
Q 001896 483 TSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA-SIFVPI 561 (998)
Q Consensus 483 ~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 561 (998)
++.||||+|||||.|+.|++|+.+++|+.+.+|+++++|+++|.+|..+++..++.++...++++++..+++. .+++++
T Consensus 76 ~~~vdes~LTGEs~pv~k~~g~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~ 155 (499)
T TIGR01494 76 SCFVDESNLTGESVPVLKTAGDAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILF 155 (499)
T ss_pred cEEEEcccccCCCCCeeeccCCccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHH
Q 001896 562 VVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDAL 641 (998)
Q Consensus 562 ~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~l 641 (998)
++++++++++.|++.... ..+|..++.+++++++++|||+|++++|+++..+..+++++||++|+++++
T Consensus 156 ~~~la~~~~~~~~~~~~~-----------~~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~gilvk~~~~l 224 (499)
T TIGR01494 156 VLLIALAVFLFWAIGLWD-----------PNSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKKGIVVRSLNAL 224 (499)
T ss_pred HHHHHHHHHHHHHHHHcc-----------cccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHCCcEEechhhh
Confidence 999999888887654210 014778999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHhhccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 001896 642 ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHS 721 (998)
Q Consensus 642 e~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~~~~l~~~~~~~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~ 721 (998)
|+||++|++|||||||||+|+|++.++++.+. +..+.||+++|+++++++..
T Consensus 225 E~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~-------------~~~s~hp~~~ai~~~~~~~~--------------- 276 (499)
T TIGR01494 225 EELGKVDYICSDKTGTLTKNEMSFKKVSVLGG-------------EYLSGHPDERALVKSAKWKI--------------- 276 (499)
T ss_pred hhccCCcEEEeeCCCccccCceEEEEEEecCC-------------CcCCCChHHHHHHHHhhhcC---------------
Confidence 99999999999999999999999999987543 46789999999999887531
Q ss_pred cccCCCcccccccceeeecCCeEEEEEcC--eEEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEE
Q 001896 722 KESTGSGWLLDVSDFSALPGRGIQCFISG--KQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVM 799 (998)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~g~gi~~~~~g--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i 799 (998)
....+|++.+ +|+...+++ +.+.+|+++++.+... .+++....+..+|.++++++++++++|++
T Consensus 277 ---------~~~~~f~~~~-~~~~~~~~~~~~~~~~G~~~~i~~~~~----~~~~~~~~~~~~g~~~~~~a~~~~~~g~i 342 (499)
T TIGR01494 277 ---------LNVFEFSSVR-KRMSVIVRGPDGTYVKGAPEFVLSRVK----DLEEKVKELAQSGLRVLAVASKETLLGLL 342 (499)
T ss_pred ---------cceeccCCCC-ceEEEEEecCCcEEEeCCHHHHHHhhH----HHHHHHHHHHhCCCEEEEEEECCeEEEEE
Confidence 1223455555 677777664 5788999999876532 13334455778999999999999999999
Q ss_pred EecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCH
Q 001896 800 GIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDS 879 (998)
Q Consensus 800 ~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~ 879 (998)
.++|++|++++++|+.|+++|++++|+|||+..++..+|+++|+ +++++|++|.++|+.+|+.|+.|+|+|||.||+
T Consensus 343 ~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi---~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~ 419 (499)
T TIGR01494 343 GLEDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI---FARVTPEEKAALVEALQKKGRVVAMTGDGVNDA 419 (499)
T ss_pred EecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc---eeccCHHHHHHHHHHHHHCCCEEEEECCChhhH
Confidence 99999999999999999999999999999999999999999997 899999999999999999999999999999999
Q ss_pred HHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001896 880 PALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAG 948 (998)
Q Consensus 880 ~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~g 948 (998)
||+++|||||+|+ ++++||++++++++..++.++++||++++++++|+.|++.||++.+|++++
T Consensus 420 ~al~~Advgia~~-----a~~~adivl~~~~l~~i~~~~~~~r~~~~~i~~~~~~~~~~n~~~~~~a~~ 483 (499)
T TIGR01494 420 PALKKADVGIAMG-----AKAAADIVLLDDNLSTIVDALKEGRKTFSTIKSNIFWAIAYNLILIPLAAL 483 (499)
T ss_pred HHHHhCCCccccc-----hHHhCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 688999999999999999999999999999999999999999999999874
No 23
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=3.1e-74 Score=715.97 Aligned_cols=571 Identities=23% Similarity=0.317 Sum_probs=442.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccc
Q 001896 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPA 475 (998)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPa 475 (998)
.|++ +++++++++++..+..++++|+.+.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.+++||+|||
T Consensus 35 ~~~~-~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~Vi---Rdg---~~~~I~~~~Lv~GDiv~l~~Gd~IPa 107 (917)
T TIGR01116 35 AFVE-PFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVL---RDG---RWSVIKAKDLVPGDIVELAVGDKVPA 107 (917)
T ss_pred cHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE---ECC---EEEEEEHHHCCCCCEEEECCCCEeec
Confidence 4555 5566677777888888889999999999999999999999 888 57999999999999999999999999
Q ss_pred cEEEEecc-eeeecccccCcCcccccCCC-------------CceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhh
Q 001896 476 DGIVVWGT-SYVNESMVTGEAVPVLKEIN-------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ 541 (998)
Q Consensus 476 Dg~vl~G~-~~Vdes~LTGEs~pv~k~~g-------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~ 541 (998)
||+|++|+ +.||||+|||||.|+.|.++ +.+|+||.+.+|.++++|++||.+|.+|++.+.++.++
T Consensus 108 D~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~~ 187 (917)
T TIGR01116 108 DIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAAE 187 (917)
T ss_pred cEEEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhccC
Confidence 99999996 78999999999999999875 78999999999999999999999999999999999988
Q ss_pred ccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHH
Q 001896 542 MSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAV 621 (998)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~ 621 (998)
.+++|+|+.+++++.++.+++++++++.|+++........+...|. ..+...+.+++++++++|||+|++++++++
T Consensus 188 ~~~t~lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~l~v~~iP~~Lp~~vti~l 263 (917)
T TIGR01116 188 QEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWI----QGAIYYFKIAVALAVAAIPEGLPAVITTCL 263 (917)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH----HHHHHHHHHHHhhhhhccccccHHHHHHHH
Confidence 8999999999999999988888777777665433211000011111 234556678889999999999999999999
Q ss_pred HHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCC--------------C------------
Q 001896 622 MVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM--------------D------------ 675 (998)
Q Consensus 622 ~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~--------------~------------ 675 (998)
+.++++|+++|+++|+++++|+||++|+||||||||||+|+|+|.+++..++. +
T Consensus 264 ~~~~~~m~~~~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (917)
T TIGR01116 264 ALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVALDPSSSSLNEFCVTGTTYAPEGGVIKDDGPV 343 (917)
T ss_pred HHHHHHHHHCCcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEecCCcccccceEEecCCccCCCccccccCCcc
Confidence 99999999999999999999999999999999999999999999998764310 0
Q ss_pred -------HHHHHHHHHHhhc-------------cCCChHHHHHHHHHHhcCCCCCCCCCCC----CCCcccccCCCcccc
Q 001896 676 -------RGEFLTLVASAEA-------------SSEHPLAKAVVEYARHFHFFDDPSLNPD----GQSHSKESTGSGWLL 731 (998)
Q Consensus 676 -------~~~~l~~~~~~~~-------------~~~hp~~~ai~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 731 (998)
.++++..++.+.. ...+|.+.|+++++++.+.......... ...............
T Consensus 344 ~~~~~~~~~~l~~~~~lc~~~~~~~~~~~~~~~~~gdp~E~ALl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (917)
T TIGR01116 344 AGGQDAGLEELATIAALCNDSSLDFNERKGVYEKVGEATEAALKVLVEKMGLPATKNGVSSKRRPALGCNSVWNDKFKKL 423 (917)
T ss_pred cccchHHHHHHHHHHHhcCCCeeeccccCCceeeccChhHHHHHHHHHHcCCCchhcccccccccccchhHHHHhhccee
Confidence 0122222222111 1258999999999987654321110000 000000000001112
Q ss_pred cccceeeecCCeEEEEEc--Ce--EEEEeeHhhhhhc--------CC--CCCh----hhHHHHHHHHH-cCCeEEEEEEC
Q 001896 732 DVSDFSALPGRGIQCFIS--GK--QVLVGNRKLLNES--------GI--TIPD----HVESFVVELEE-SARTGILVAYD 792 (998)
Q Consensus 732 ~~~~~~~~~g~gi~~~~~--g~--~~~~g~~~~~~~~--------~~--~~~~----~~~~~~~~~~~-~g~~~i~va~~ 792 (998)
...+|++..++ ....++ ++ .+..|+++.+.+. +. ++.+ .+.+..+++.. +|+|++++||+
T Consensus 424 ~~~pF~s~rK~-msviv~~~~~~~~~~KGApe~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~~GlRvl~~A~k 502 (917)
T TIGR01116 424 ATLEFSRDRKS-MSVLCKPSTGNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTILSVIKEMGTTKALRCLALAFK 502 (917)
T ss_pred eecccChhhCe-EEEEEeeCCcEEEEEcCChHHHHHhccceecCCCCeeeCCHHHHHHHHHHHHHHHhhcCCeEEEEEEE
Confidence 22344433322 111121 21 3344676665442 21 1222 23445677888 99999999862
Q ss_pred -----------------------CeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc-----
Q 001896 793 -----------------------DNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----- 844 (998)
Q Consensus 793 -----------------------~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~----- 844 (998)
.+|+|+++++||+|++++++|+.||++|++++|+|||+..+|.++|+++|+.
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~e~~l~~lGl~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~ 582 (917)
T TIGR01116 503 DIPDPREEDLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDED 582 (917)
T ss_pred ECCccccccccccchhhhhhcCCcEEEEEeeeeCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCcc
Confidence 3789999999999999999999999999999999999999999999999985
Q ss_pred --------------------------eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEecCchHHH
Q 001896 845 --------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 898 (998)
Q Consensus 845 --------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~ 898 (998)
.+|+|++|++|.++|+.+|+.|+.|+|+|||.||+|||++|||||+||+|++.+
T Consensus 583 v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g~g~~~a 662 (917)
T TIGR01116 583 VTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMGSGTEVA 662 (917)
T ss_pred ccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECCCCcHHH
Confidence 289999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCCCccHHHHHHHhhhhhHHHhhh
Q 001896 899 IEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAA-GVFFPSLGIKLPPWAAGACMALSSVSVVCS 977 (998)
Q Consensus 899 ~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~-g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~ 977 (998)
+++||+++.++++..+.+++++||++++|+++++.|.+..|+..+.+.+ +.+ +|+. .|+-+.-+...+-+...+.
T Consensus 663 k~aAD~vl~dd~f~~i~~~i~~GR~~~~ni~k~i~~~l~~ni~~~~~~~~~~~---~~~~-~pl~~~qll~inli~d~lp 738 (917)
T TIGR01116 663 KEASDMVLADDNFATIVAAVEEGRAIYNNMKQFIRYMISSNIGEVVCIFLTAA---LGIP-EGLIPVQLLWVNLVTDGLP 738 (917)
T ss_pred HHhcCeEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HcCC-chHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997655443 222 2221 3444444445555555555
Q ss_pred ccccc
Q 001896 978 SLLLR 982 (998)
Q Consensus 978 s~~l~ 982 (998)
++.|.
T Consensus 739 ~~~l~ 743 (917)
T TIGR01116 739 ATALG 743 (917)
T ss_pred HHHHh
Confidence 55443
No 24
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=1.5e-72 Score=709.99 Aligned_cols=561 Identities=22% Similarity=0.283 Sum_probs=435.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEc--CCCcc
Q 001896 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVL--PGTKL 473 (998)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~--~G~~i 473 (998)
.||..+++++++++++..+..++++|+.+.++++.. .+..++|+ ||| ++++|+++||+|||+|.|+ +|++|
T Consensus 191 ~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~---Rdg---~~~~I~s~eLvpGDiv~l~~~~g~~i 263 (1054)
T TIGR01657 191 EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVI---RNG---KWVTIASDELVPGDIVSIPRPEEKTM 263 (1054)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEE---ECC---EEEEEEcccCCCCCEEEEecCCCCEe
Confidence 455567777778888899999999999888888754 46788888 888 6899999999999999999 99999
Q ss_pred cccEEEEecceeeecccccCcCcccccCCC------------------Cceecceeeee-------ceEEEEEEEecChh
Q 001896 474 PADGIVVWGTSYVNESMVTGEAVPVLKEIN------------------SPVIGGTINLH-------GVLHIQATKVGSDA 528 (998)
Q Consensus 474 PaDg~vl~G~~~Vdes~LTGEs~pv~k~~g------------------~~v~aGt~~~~-------g~~~~~v~~~g~~t 528 (998)
||||+|++|++.||||+|||||.|+.|.+. +.+|+||.+.+ |.+.++|++||.+|
T Consensus 264 PaD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T 343 (1054)
T TIGR01657 264 PCDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFST 343 (1054)
T ss_pred cceEEEEeCcEEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccc
Confidence 999999999999999999999999999762 24999999985 78999999999999
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhh
Q 001896 529 VLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA 608 (998)
Q Consensus 529 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~ 608 (998)
..|++.+.+...+..++++++...++..++. ++++++++++++.+... +.++...+.+++++++++
T Consensus 344 ~~G~i~~~i~~~~~~~~~~~~~~~~~~~~l~----~~a~i~~i~~~~~~~~~----------~~~~~~~~l~~l~iiv~~ 409 (1054)
T TIGR01657 344 SKGQLVRSILYPKPRVFKFYKDSFKFILFLA----VLALIGFIYTIIELIKD----------GRPLGKIILRSLDIITIV 409 (1054)
T ss_pred cchHHHHHhhCCCCCCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHHHhh
Confidence 9999999998887778888877666655443 33333333322222111 235788899999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCC-------------
Q 001896 609 CPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD------------- 675 (998)
Q Consensus 609 ~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~------------- 675 (998)
+|++|++++++++..++.+|+|+||+||++.++|.+|++|++|||||||||+|+|+|.+++..++..
T Consensus 410 vP~~LP~~~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~~~~~~~~~~~~~~~~~ 489 (1054)
T TIGR01657 410 VPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLSGNQEFLKIVTEDSSLK 489 (1054)
T ss_pred cCchHHHHHHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEecccCccccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999998754211
Q ss_pred HHHHHHHHHHhh-------ccCCChHHHHHHHHHHhcCCCCCCCCCCCCCC---cccccCCCcccccccceeeecCC-eE
Q 001896 676 RGEFLTLVASAE-------ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQS---HSKESTGSGWLLDVSDFSALPGR-GI 744 (998)
Q Consensus 676 ~~~~l~~~~~~~-------~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~-gi 744 (998)
...+....+.+. ....+|++.|+++++.+....+.......... ..........+....+|++..++ .+
T Consensus 490 ~~~~~~~~a~C~~~~~~~~~~~Gdp~E~al~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~il~~~pF~S~~krMsv 569 (1054)
T TIGR01657 490 PSITHKALATCHSLTKLEGKLVGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQELSIIRRFQFSSALQRMSV 569 (1054)
T ss_pred chHHHHHHHhCCeeEEECCEEecCHHHHHHHHhCCCEEECCCCcccccccccceeccCCCceEEEEEEEeecCCCCEEEE
Confidence 111222222221 12479999999998754311100000000000 00000001122233455554443 23
Q ss_pred EEEEc--Ce--EEEEeeHhhhhhcCC--CCChhhHHHHHHHHHcCCeEEEEEE---------------------CCeEEE
Q 001896 745 QCFIS--GK--QVLVGNRKLLNESGI--TIPDHVESFVVELEESARTGILVAY---------------------DDNLIG 797 (998)
Q Consensus 745 ~~~~~--g~--~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~i~va~---------------------~~~~lG 797 (998)
..... ++ .+..|+++.+.+... ..|+++.+..+++..+|+|++++|| |++|+|
T Consensus 570 vv~~~~~~~~~~~~KGApE~Il~~c~~~~~p~~~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~~~~~r~~~E~~L~flG 649 (1054)
T TIGR01657 570 IVSTNDERSPDAFVKGAPETIQSLCSPETVPSDYQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFLG 649 (1054)
T ss_pred EEEEcCCCeEEEEEECCHHHHHHHcCCcCCChhHHHHHHHHHhcCCEEEEEEEeecCccchhhhhhccHHHHhcCceEEE
Confidence 22322 22 466799998877433 5688888889999999999999997 347999
Q ss_pred EEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc---------------------------------
Q 001896 798 VMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--------------------------------- 844 (998)
Q Consensus 798 ~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~--------------------------------- 844 (998)
+++|+|++||+++++|+.||++|++++|+|||+..+|.++|+++||.
T Consensus 650 li~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1054)
T TIGR01657 650 FIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPFA 729 (1054)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCceEEEeecccccCCCCceEEEEecCccccc
Confidence 99999999999999999999999999999999999999999999991
Q ss_pred --------------------------------------------------eEEEecCcccHHHHHHHHhhcCCEEEEEcC
Q 001896 845 --------------------------------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGD 874 (998)
Q Consensus 845 --------------------------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGD 874 (998)
.+|+|++|+||.++|+.+|+.|+.|+|+||
T Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~g~~V~m~GD 809 (1054)
T TIGR01657 730 STQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKLDYTVGMCGD 809 (1054)
T ss_pred cccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 289999999999999999999999999999
Q ss_pred CCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 001896 875 GINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSL 954 (998)
Q Consensus 875 g~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a~g~~~~~~ 954 (998)
|.||+|||++||||||||++ + +..+||+++.+++++.++.+|++||.++.++++.+.|.+.|+++.....+ +++ +.
T Consensus 810 G~ND~~ALK~AdVGIam~~~-d-as~AA~f~l~~~~~~~I~~~I~eGR~~l~~~~~~~~~~~~~~~~~~~~~~-~l~-~~ 885 (1054)
T TIGR01657 810 GANDCGALKQADVGISLSEA-E-ASVAAPFTSKLASISCVPNVIREGRCALVTSFQMFKYMALYSLIQFYSVS-ILY-LI 885 (1054)
T ss_pred ChHHHHHHHhcCcceeeccc-c-ceeecccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-Hc
Confidence 99999999999999999865 3 34789999999999999999999999999999999999999987643322 111 23
Q ss_pred CCCccHHHHHHHhhhhhHHHhhhccccccc
Q 001896 955 GIKLPPWAAGACMALSSVSVVCSSLLLRRY 984 (998)
Q Consensus 955 g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~ 984 (998)
|..++|+. ++.+..++..+.++.+.+.
T Consensus 886 ~~~l~~~Q---~l~i~li~~~~~~l~l~~~ 912 (1054)
T TIGR01657 886 GSNLGDGQ---FLTIDLLLIFPVALLMSRN 912 (1054)
T ss_pred cCcCccHH---HHHHHHHHHHHHHHHHHcC
Confidence 44455543 3444455555555555443
No 25
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-68 Score=593.62 Aligned_cols=527 Identities=23% Similarity=0.328 Sum_probs=410.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccE
Q 001896 398 FETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADG 477 (998)
Q Consensus 398 ~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg 477 (998)
...+.++...+.+...+..++..|..+.++.+.++.|..+.|+ ||| +..++..++|++||++.++-|++||||.
T Consensus 126 ly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~Vi---Rdg---~k~~i~~eelVvGD~v~vk~GdrVPADi 199 (1019)
T KOG0203|consen 126 LYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVI---RDG---EKMTINAEELVVGDLVEVKGGDRVPADI 199 (1019)
T ss_pred eEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheee---ecc---eeEEechhhcccccceeeccCCccccee
Confidence 3334555555555666777888889999999999999999999 898 6899999999999999999999999999
Q ss_pred EEEecce-eeecccccCcCcccccCC----------CCceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCCh
Q 001896 478 IVVWGTS-YVNESMVTGEAVPVLKEI----------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAP 546 (998)
Q Consensus 478 ~vl~G~~-~Vdes~LTGEs~pv~k~~----------g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~ 546 (998)
+++++.. .+|+|+|||||+|..+.+ .+.-|.+|.+.+|.+++.|++||.+|.+|+|..+....+..++|
T Consensus 200 Riis~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~ 279 (1019)
T KOG0203|consen 200 RIISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTGRGIVIATGDRTVMGRIASLASGLEDGKTP 279 (1019)
T ss_pred EEEEecceeEeccccccccCCccCCccccccCchhheeeeeeeeEEecceEEEEEEecCCceEEeehhhhhccCCCCCCc
Confidence 9999885 699999999999999865 35689999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHH
Q 001896 547 IQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATG 626 (998)
Q Consensus 547 ~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~ 626 (998)
+++..+++..+...+++++++..|++-...+ ..|..++.+.++++++..|.+|+..++..+....+
T Consensus 280 ~~~ei~~fi~~it~vAi~~~i~fF~~~~~~g--------------y~~l~avv~~i~iivAnvPeGL~~tvTv~Ltltak 345 (1019)
T KOG0203|consen 280 IAKEIEHFIHIITGVAIFLGISFFILALILG--------------YEWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAK 345 (1019)
T ss_pred chhhhhchHHHHHHHHHHHHHHHHHHHHhhc--------------chhHHHhhhhheeEEecCcCCccceehhhHHHHHH
Confidence 9999999998877776666666554443332 25788888999999999999999999999999999
Q ss_pred HHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCCH-------------------HHHHHHHHHhh
Q 001896 627 VGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDR-------------------GEFLTLVASAE 687 (998)
Q Consensus 627 ~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~-------------------~~~l~~~~~~~ 687 (998)
+|+++++++|++++.|+||...+||.|||||||+|.|+|.+++..+.... .++.+.+.-..
T Consensus 346 rMa~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d~~i~~~d~~~~~~~~~~~~~~~~~~~l~r~~~lCn 425 (1019)
T KOG0203|consen 346 RMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFDNQIHEADTTEDQSGQSFDKSSATFIALSRIATLCN 425 (1019)
T ss_pred HHhhceeEEeeeeheeecccceeEeecceeeEEecceEEEeeccCCceeeeechhhhhcccccccCchHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999987654211 12222222111
Q ss_pred c----------------cCCChHHHHHHHHHHhcC-CCCCCCCCCCCCCcccccCCCcccccccceeeecCCeEEEEEcC
Q 001896 688 A----------------SSEHPLAKAVVEYARHFH-FFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISG 750 (998)
Q Consensus 688 ~----------------~~~hp~~~ai~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g 750 (998)
. -..++.+.|+++++...- ..+..+............+.+.....+...+.-........+||
T Consensus 426 ~a~~~~gq~dvPv~kk~v~G~~se~ALlk~~e~~~~~~~~~R~~~~kv~eipfNSt~Kyqlsih~~~d~~~~~~~l~mKG 505 (1019)
T KOG0203|consen 426 RAVFKPGQDDVPVLKRDVAGDASEVALLKFIELILGSVMELRERNPKVAEIPFNSTNKYQLSIHETEDPSDPRFLLVMKG 505 (1019)
T ss_pred cceecccccCCceeeeeccCCHHHHHHHHHHHHhcchHHHHHHhhHHhhcCCcccccceEEEEEecCCCCCccceeeecC
Confidence 0 135788889999886431 10111100000000000000111111111110001111223344
Q ss_pred e-EEEEeeHhhhhhcCCCCChh------hHHHHHHHHHcCCeEEEEEE------------------------CCeEEEEE
Q 001896 751 K-QVLVGNRKLLNESGITIPDH------VESFVVELEESARTGILVAY------------------------DDNLIGVM 799 (998)
Q Consensus 751 ~-~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~i~va~------------------------~~~~lG~i 799 (998)
. +.++.+++.+.-+|.+.|.+ +.+.+.++...|.+++.+++ +..|+|++
T Consensus 506 ape~il~~CSTi~i~g~e~pld~~~~~~f~~ay~~lg~~GerVlgF~~~~l~~~~~p~~~~f~~d~~n~p~~nl~FlGl~ 585 (1019)
T KOG0203|consen 506 APERILDRCSTILINGEEKPLDEKLKEAFQEAYLELGGLGERVLGFCDLELPDEKFPRGFQFDTDDVNFPTDNLRFLGLI 585 (1019)
T ss_pred ChHHHHhhccceeecCCCCCcCHHHHHHHHHHHHHhhhcchHHHHHHHHhcchhcCCCceEeecCCCCCcchhccccchh
Confidence 3 12222222222233333322 23334445555666554432 56899999
Q ss_pred EecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc-----------------------------------
Q 001896 800 GIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----------------------------------- 844 (998)
Q Consensus 800 ~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~----------------------------------- 844 (998)
++-||+|..+++++.++|.+||+++|+|||++.+|+++|++.||.
T Consensus 586 s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~e 665 (1019)
T KOG0203|consen 586 SMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSE 665 (1019)
T ss_pred hccCCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEeccc
Confidence 999999999999999999999999999999999999999999963
Q ss_pred ------------------eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEec-CchHHHHHhcCEE
Q 001896 845 ------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYV 905 (998)
Q Consensus 845 ------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~v 905 (998)
-+|+|.+|+||+.||+.+|+.|..|+.+|||+||+|||+.|||||||| .|+|++|++||.|
T Consensus 666 L~~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGiaGSDvsKqAADmI 745 (1019)
T KOG0203|consen 666 LPDMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMI 745 (1019)
T ss_pred ccccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeeccccchHHHhhcceE
Confidence 189999999999999999999999999999999999999999999999 8999999999999
Q ss_pred EecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001896 906 LMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIP 944 (998)
Q Consensus 906 l~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~ 944 (998)
|++|||.+++..+++||-+++|.||.++|.++.|+--|.
T Consensus 746 LLDDNFASIVtGVEEGRLiFDNLKKsIAYTLTsNipEI~ 784 (1019)
T KOG0203|consen 746 LLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEIT 784 (1019)
T ss_pred EecCcchhheeecccceehhhhHHHHHHHHHHhcchhHh
Confidence 999999999999999999999999999999999997663
No 26
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-62 Score=555.33 Aligned_cols=545 Identities=24% Similarity=0.326 Sum_probs=411.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEE
Q 001896 374 SAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEERE 453 (998)
Q Consensus 374 ~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~ 453 (998)
..-|++.++++++ |....|++.++.++.+...+..+..+..++....++++.+. +..++|+ |+| .+++
T Consensus 195 ~PfYlFQ~fSv~l-----W~~d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~-~~~V~V~---R~g---~~~t 262 (1140)
T KOG0208|consen 195 NPFYLFQAFSVAL-----WLADSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKF-TCPVTVI---RDG---FWET 262 (1140)
T ss_pred chHHHHHhHHhhh-----hhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEE---ECC---EEEE
Confidence 3445566665555 33456777788888888889999999888888888888654 3567777 777 6899
Q ss_pred EeCCCCCCCCEEEEcC-CCcccccEEEEecceeeecccccCcCcccccCCC-------------------Cceecceeee
Q 001896 454 IDALLIQSGDTLKVLP-GTKLPADGIVVWGTSYVNESMVTGEAVPVLKEIN-------------------SPVIGGTINL 513 (998)
Q Consensus 454 i~~~~l~~GDii~v~~-G~~iPaDg~vl~G~~~Vdes~LTGEs~pv~k~~g-------------------~~v~aGt~~~ 513 (998)
|.++||+||||+++.+ |-..|||++|++|+|.||||+|||||+|+.|.+- +.+|+||.++
T Consensus 263 i~S~eLVPGDil~i~~~~~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vl 342 (1140)
T KOG0208|consen 263 VDSSELVPGDILYIPPPGKIMPCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVL 342 (1140)
T ss_pred EeccccccccEEEECCCCeEeecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCcceeeccceEE
Confidence 9999999999999999 9999999999999999999999999999999663 4589999987
Q ss_pred e------ceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q 001896 514 H------GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWL 587 (998)
Q Consensus 514 ~------g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~ 587 (998)
+ +.+.++|++||-+|..|++.+.+..++. .+.+-.-|.+ .|+.....+|++.|+.-.+....
T Consensus 343 q~r~~~g~~v~a~V~RTGF~T~KGqLVRsilyPkP--~~fkfyrds~--~fi~~l~~ia~~gfiy~~i~l~~-------- 410 (1140)
T KOG0208|consen 343 QARAYLGGPVLAMVLRTGFSTTKGQLVRSILYPKP--VNFKFYRDSF--KFILFLVIIALIGFIYTAIVLNL-------- 410 (1140)
T ss_pred EeecCCCCceEEEEEeccccccccHHHHhhcCCCC--cccHHHHHHH--HHHHHHHHHHHHHHHHHhHhHHH--------
Confidence 5 7899999999999999999988876442 2223222222 23333333444444432222111
Q ss_pred CCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEE
Q 001896 588 PENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT 667 (998)
Q Consensus 588 ~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~ 667 (998)
.+.++...+++++.++.+.+|+|||.++.++...+.+|+.|+||+|-+|+.+...|++|++|||||||||++.+.+..
T Consensus 411 --~g~~~~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkkk~IfCisP~rIn~~G~i~~~cFDKTGTLTEdGLDl~g 488 (1140)
T KOG0208|consen 411 --LGVPLKTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKKKGIFCISPQRINLCGKLNLVCFDKTGTLTEDGLDLWG 488 (1140)
T ss_pred --cCCCHHHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhcCeEEcCccceeecceeeEEEEcCCCcccccceeEEE
Confidence 134677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCC-CH----HHHH--------------------HHH-HHhhcc---------CCChHHHHHHHHHHhcCCCC---
Q 001896 668 AKVFTKM-DR----GEFL--------------------TLV-ASAEAS---------SEHPLAKAVVEYARHFHFFD--- 709 (998)
Q Consensus 668 i~~~~~~-~~----~~~l--------------------~~~-~~~~~~---------~~hp~~~ai~~~~~~~~~~~--- 709 (998)
+.+.++. +. .... .+. +.+.++ ..+|++..+++...+.....
T Consensus 489 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~atCHSL~~v~g~l~GDPLdlkmfe~t~w~~ee~~~~ 568 (1140)
T KOG0208|consen 489 VVPVERNVDDGPELKVVTEDSLQLFYKLSLRSSSLPMGNLVAAMATCHSLTLVDGTLVGDPLDLKMFESTGWVYEEADIE 568 (1140)
T ss_pred EEeccccccccchhhhhhhhhccceeeccccccCCchHHHHHHHhhhceeEEeCCeeccCceeeeeeeccceEEEecccc
Confidence 8875321 10 0000 011 111111 23566555555443321000
Q ss_pred CCCC-----------CCCC--CCcccccCC-Cccccccccee-eecCCeEEEEEcCe----EEEEeeHhhhhhcC--CCC
Q 001896 710 DPSL-----------NPDG--QSHSKESTG-SGWLLDVSDFS-ALPGRGIQCFISGK----QVLVGNRKLLNESG--ITI 768 (998)
Q Consensus 710 ~~~~-----------~~~~--~~~~~~~~~-~~~~~~~~~~~-~~~g~gi~~~~~g~----~~~~g~~~~~~~~~--~~~ 768 (998)
.... .+.. ++...+... ..-+....+|. .+..+.+.+...|. .+..|+++.+.+.. ..+
T Consensus 569 ~~~~~~~~~~~p~v~~p~~~~~~~~t~~~~~~~si~k~feF~S~LrRMSVIv~~~~e~~~~~ftKGaPE~I~~ic~p~tv 648 (1140)
T KOG0208|consen 569 DEATREFNTLIPTVVRPPENAFNQSTECGEGEISIVKQFEFSSALRRMSVIVSTGGEDKMMVFTKGAPESIAEICKPETV 648 (1140)
T ss_pred chhhhhhCCccCCEeCCCcccccCCCcCCCcceEEEEecccchhhheEEEEEecCCCCceEeeccCCHHHHHHhcCcccC
Confidence 0000 0000 000000000 00011111222 22333444444433 45669999887743 346
Q ss_pred ChhhHHHHHHHHHcCCeEEEEEE---------------------CCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEc
Q 001896 769 PDHVESFVVELEESARTGILVAY---------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVT 827 (998)
Q Consensus 769 ~~~~~~~~~~~~~~g~~~i~va~---------------------~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~t 827 (998)
|.++++.++.+..+|+|+|++|+ |.+|+|+|.|++++|++++.+|++|.+++|+++|+|
T Consensus 649 P~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVmeNkLK~~T~~VI~eL~~AnIRtVMcT 728 (1140)
T KOG0208|consen 649 PADYQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVMENKLKEETKRVIDELNRANIRTVMCT 728 (1140)
T ss_pred CccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEeecccccccHHHHHHHHhhcceEEEEc
Confidence 99999999999999999999987 568999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCcc---------------------------------------------------------------
Q 001896 828 GDNWRTAHAVAREIGIQ--------------------------------------------------------------- 844 (998)
Q Consensus 828 gd~~~~a~~ia~~~gi~--------------------------------------------------------------- 844 (998)
|||..||..+|+++|+.
T Consensus 729 GDNllTaisVakeCgmi~p~~~v~~~~~~~~~~~~~~~i~w~~ve~~~~~~~~~~~~~~~~~~~~~~d~~~~~~yhlA~s 808 (1140)
T KOG0208|consen 729 GDNLLTAISVAKECGMIEPQVKVIIPELEPPEDDSIAQIVWLCVESQTQFLDPKEPDPDLASVKLSLDVLSEKDYHLAMS 808 (1140)
T ss_pred CCchheeeehhhcccccCCCCeEEEEeccCCccCCCceeEEEEccCccccCCCCccCccccCCccChhhhccceeEEEec
Confidence 99999999999999984
Q ss_pred ----------------------eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhc
Q 001896 845 ----------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAA 902 (998)
Q Consensus 845 ----------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~a 902 (998)
.+|||++|+||.++|+.||+-|..|+|+|||.||+.||++|||||+++.+ +|.-+|
T Consensus 809 G~~f~~i~~~~~~l~~~Il~~~~VfARMsP~qK~~Lie~lQkl~y~VgfCGDGANDCgALKaAdvGISLSea--EASvAA 886 (1140)
T KOG0208|consen 809 GKTFQVILEHFPELVPKILLKGTVFARMSPDQKAELIEALQKLGYKVGFCGDGANDCGALKAADVGISLSEA--EASVAA 886 (1140)
T ss_pred CchhHHHHhhcHHHHHHHHhcCeEEeecCchhHHHHHHHHHhcCcEEEecCCCcchhhhhhhcccCcchhhh--hHhhcC
Confidence 39999999999999999999999999999999999999999999999743 445577
Q ss_pred CEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001896 903 DYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIA 946 (998)
Q Consensus 903 d~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~~a 946 (998)
.+.---.+++.++.+|++||..+-.-...+.|...|.++.....
T Consensus 887 pFTSk~~~I~cVp~vIrEGRaALVTSf~~FkYMalYs~iqFisv 930 (1140)
T KOG0208|consen 887 PFTSKTPSISCVPDVIREGRAALVTSFACFKYMALYSAIQFISV 930 (1140)
T ss_pred ccccCCCchhhHhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 77776679999999999999999999999999999988765433
No 27
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-63 Score=541.29 Aligned_cols=511 Identities=24% Similarity=0.364 Sum_probs=421.4
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCC
Q 001896 392 FWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGT 471 (998)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~ 471 (998)
..+++|-+ ...++.+++++..+...+++.+-+....|+.....++.|+ ||| +|.++++++||||||+.++.|+
T Consensus 92 ~~~~DW~D-F~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVl---RDG---kw~E~eAs~lVPGDIlsik~Gd 164 (942)
T KOG0205|consen 92 GRPPDWQD-FVGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVL---RDG---KWSEQEASILVPGDILSIKLGD 164 (942)
T ss_pred CCCcchhh-hhhhheeeeecceeeeeeccccchHHHHHHhccCcccEEe---ecC---eeeeeeccccccCceeeeccCC
Confidence 44566666 4556666677777777777777788888887777888888 899 5799999999999999999999
Q ss_pred cccccEEEEeccee-eecccccCcCcccccCCCCceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHH
Q 001896 472 KLPADGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKF 550 (998)
Q Consensus 472 ~iPaDg~vl~G~~~-Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~ 550 (998)
+|||||++++|+-+ ||+|.|||||.|+.|++||.+|+||.+.+|++.++|++||.+|+.|+-.+++.. ..+...+|+.
T Consensus 165 IiPaDaRLl~gD~LkiDQSAlTGESLpvtKh~gd~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHFqkV 243 (942)
T KOG0205|consen 165 IIPADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKV 243 (942)
T ss_pred EecCccceecCCccccchhhhcCCccccccCCCCceecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccHHHH
Confidence 99999999999965 999999999999999999999999999999999999999999999999999988 5677899999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhh-ccccchhhHHHHHHHHHHHHH
Q 001896 551 ADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA-CPCALGLATPTAVMVATGVGA 629 (998)
Q Consensus 551 ~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~-~P~aL~la~p~~~~~~~~~~~ 629 (998)
+..+.++++..+.+-.++.+++.+... .........-+.++++. +|.+||..+++.++.+..+++
T Consensus 244 Lt~IGn~ci~si~~g~lie~~vmy~~q--------------~R~~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rLa 309 (942)
T KOG0205|consen 244 LTGIGNFCICSIALGMLIEITVMYPIQ--------------HRLYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLS 309 (942)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhhhhheheeeecccccccceeeeehhhHHHHHHH
Confidence 999999887655543333333222111 11222334445555555 999999999999999999999
Q ss_pred hcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEE--E-EecCCCCHHHHHHHHHHhhc-cCCChHHHHHHHHHHhc
Q 001896 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT--A-KVFTKMDRGEFLTLVASAEA-SSEHPLAKAVVEYARHF 705 (998)
Q Consensus 630 k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~--i-~~~~~~~~~~~l~~~~~~~~-~~~hp~~~ai~~~~~~~ 705 (998)
++|.+.|+..++|.++.+|++|+|||||||.|+++|.+ + ...++.+.++++-.++.+.. ...+.+++|++...++.
T Consensus 310 qqgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~en~DAID~A~v~~L~dP 389 (942)
T KOG0205|consen 310 QQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRKENQDAIDAAIVGMLADP 389 (942)
T ss_pred hcccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhhcChhhHHHHHHHhhcCH
Confidence 99999999999999999999999999999999999988 5 44577888888877766554 45678999998876542
Q ss_pred CCCCCCCCCCCCCCcccccCCCcccccccceeeecCCeEEEEE--cCe--EEEEeeHhhhhh---cCCCCChhhHHHHHH
Q 001896 706 HFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFI--SGK--QVLVGNRKLLNE---SGITIPDHVESFVVE 778 (998)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~--~g~--~~~~g~~~~~~~---~~~~~~~~~~~~~~~ 778 (998)
++...+....+..+|.....+-.-.++ +|+ +...|.+.++.+ ...++|....+.+++
T Consensus 390 ----------------Keara~ikevhF~PFnPV~Krta~ty~d~dG~~~r~sKGAPeqil~l~~~~~~i~~~vh~~id~ 453 (942)
T KOG0205|consen 390 ----------------KEARAGIKEVHFLPFNPVDKRTALTYIDPDGNWHRVSKGAPEQILKLCNEDHDIPERVHSIIDK 453 (942)
T ss_pred ----------------HHHhhCceEEeeccCCccccceEEEEECCCCCEEEecCCChHHHHHHhhccCcchHHHHHHHHH
Confidence 000011112233344444444333333 233 555688887643 455678888888899
Q ss_pred HHHcCCeEEEEEECC-------------eEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc-
Q 001896 779 LEESARTGILVAYDD-------------NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ- 844 (998)
Q Consensus 779 ~~~~g~~~i~va~~~-------------~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~- 844 (998)
+.++|.|.++||++. +++|+.-+-||+|.+..++|+.-...|..|.|+|||...-++..++++|+-
T Consensus 454 ~AeRGlRSLgVArq~v~e~~~~~~g~pw~~~gllp~fdpprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgt 533 (942)
T KOG0205|consen 454 FAERGLRSLAVARQEVPEKTKESPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGT 533 (942)
T ss_pred HHHhcchhhhhhhhccccccccCCCCCcccccccccCCCCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhcccc
Confidence 999999999999843 799999999999999999999999999999999999999999999998874
Q ss_pred -----------------------------eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEecCch
Q 001896 845 -----------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGT 895 (998)
Q Consensus 845 -----------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~ 895 (998)
+-|+.+.|++|.++|+.||++|+.|+|.|||+||+|+|+.||+||++..++
T Consensus 534 nmypss~llG~~~~~~~~~~~v~elie~adgfAgVfpehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava~at 613 (942)
T KOG0205|consen 534 NMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFPEHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAVADAT 613 (942)
T ss_pred CcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCHHHHHHHHHHHhhcCceecccCCCcccchhhcccccceeeccch
Confidence 367889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001896 896 DIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 940 (998)
Q Consensus 896 ~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~ 940 (998)
+.++.++|+|+....++.+..++..+|.++++++....|+++..+
T Consensus 614 daar~asdiVltepglSviI~avltSraIfqrmknytiyavsiti 658 (942)
T KOG0205|consen 614 DAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITI 658 (942)
T ss_pred hhhcccccEEEcCCCchhhHHHHHHHHHHHHHHhhheeeeehhHH
Confidence 999999999999999999999999999999999998888776544
No 28
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-62 Score=518.76 Aligned_cols=491 Identities=29% Similarity=0.403 Sum_probs=403.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC-eEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEE
Q 001896 402 AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVV 480 (998)
Q Consensus 402 ~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~-~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl 480 (998)
.++++.+++..+-|..++.|...+-+.|+....+ .++++. .+| +.+.+++.+|+.||+|+|+.||.||+||.|+
T Consensus 70 ~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~--~~g---~~~~v~st~Lk~gdiV~V~age~IP~DGeVI 144 (681)
T COG2216 70 IILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLR--ADG---SIEMVPATELKKGDIVLVEAGEIIPSDGEVI 144 (681)
T ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhc--CCC---CeeeccccccccCCEEEEecCCCccCCCeEE
Confidence 3344455688899999887766665665544333 244442 336 5799999999999999999999999999999
Q ss_pred ecceeeecccccCcCcccccCCC---CceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHh
Q 001896 481 WGTSYVNESMVTGEAVPVLKEIN---SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASI 557 (998)
Q Consensus 481 ~G~~~Vdes~LTGEs~pv~k~~g---~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 557 (998)
+|.+.||||.+||||.||-|+.| +.|-.||.+.+..++++++....+|++.|++.+++.++.+|+|-+-.+.-+..-
T Consensus 145 eG~asVdESAITGESaPViresGgD~ssVtGgT~v~SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNEIAL~iLL~~ 224 (681)
T COG2216 145 EGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTPNEIALTILLSG 224 (681)
T ss_pred eeeeecchhhccCCCcceeeccCCCcccccCCcEEeeeeEEEEEEcCCCccHHHHHHHHhhchhccCChhHHHHHHHHHH
Confidence 99999999999999999999998 779999999999999999999999999999999999999999987655444332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEec
Q 001896 558 FVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKG 637 (998)
Q Consensus 558 ~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~ 637 (998)
+..+.+ ++..+ .|.+..+.. . -...+...+++++..+|-.++--++.-=..++.|+.+.|++-++
T Consensus 225 LTliFL-~~~~T--l~p~a~y~~--------g----~~~~i~~LiALlV~LIPTTIGgLLsAIGIAGMdRv~~~NViA~S 289 (681)
T COG2216 225 LTLIFL-LAVAT--LYPFAIYSG--------G----GAASVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVTQFNVIATS 289 (681)
T ss_pred HHHHHH-HHHHh--hhhHHHHcC--------C----CCcCHHHHHHHHHHHhcccHHHHHHHhhhhhhhHhhhhceeecC
Confidence 222111 11111 122221110 0 01134456778888889888877776667789999999999999
Q ss_pred chHHHhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHhhccCCChHHHHHHHHHHhcCCCCCCCCCCCC
Q 001896 638 GDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDG 717 (998)
Q Consensus 638 ~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~~~~l~~~~~~~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~ 717 (998)
++++|..|.+|+++.|||||+|.|+-.-.++++.++.+.+++...+...+...+.|-.++|++.+++.+..-.......
T Consensus 290 GRAVEaaGDvdtliLDKTGTIT~GnR~A~~f~p~~gv~~~~la~aa~lsSl~DeTpEGrSIV~LA~~~~~~~~~~~~~~- 368 (681)
T COG2216 290 GRAVEAAGDVDTLLLDKTGTITLGNRQASEFIPVPGVSEEELADAAQLASLADETPEGRSIVELAKKLGIELREDDLQS- 368 (681)
T ss_pred cchhhhcCCccEEEecccCceeecchhhhheecCCCCCHHHHHHHHHHhhhccCCCCcccHHHHHHHhccCCCcccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999998752111100000
Q ss_pred CCcccccCCCcccccccceeeecC-CeEEEEEcCeEEEEeeHh----hhhhcCCCCChhhHHHHHHHHHcCCeEEEEEEC
Q 001896 718 QSHSKESTGSGWLLDVSDFSALPG-RGIQCFISGKQVLVGNRK----LLNESGITIPDHVESFVVELEESARTGILVAYD 792 (998)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~g-~gi~~~~~g~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~ 792 (998)
-.+..+|+.... .|+.. -+|+.+..|+.. +..+.+...|.+++...++.+..|.+++.|..|
T Consensus 369 ------------~~~fvpFtA~TRmSGvd~-~~~~~irKGA~dai~~~v~~~~g~~p~~l~~~~~~vs~~GGTPL~V~~~ 435 (681)
T COG2216 369 ------------HAEFVPFTAQTRMSGVDL-PGGREIRKGAVDAIRRYVRERGGHIPEDLDAAVDEVSRLGGTPLVVVEN 435 (681)
T ss_pred ------------cceeeecceecccccccC-CCCceeecccHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCceEEEEC
Confidence 012223333222 23211 123567777754 455667778999999999999999999999999
Q ss_pred CeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhcCCEEEEE
Q 001896 793 DNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMV 872 (998)
Q Consensus 793 ~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~v 872 (998)
++++|++.++|.++|+.+|-..+||++|++.+|+||||+.+|..||++.|+|++.++.+||+|.++|+.-|.+|+.|+|+
T Consensus 436 ~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiAeatPEdK~~~I~~eQ~~grlVAMt 515 (681)
T COG2216 436 GRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIAEATPEDKLALIRQEQAEGRLVAMT 515 (681)
T ss_pred CEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhhcCChHHHHHHHHHHHhcCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHHHHHHHHH
Q 001896 873 GDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFA 926 (998)
Q Consensus 873 GDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~ 926 (998)
|||.||+|||.+||||+||.+|++.+||++..|=+++|...+.+.+++|++.+-
T Consensus 516 GDGTNDAPALAqAdVg~AMNsGTqAAkEAaNMVDLDS~PTKlievV~IGKqlLi 569 (681)
T COG2216 516 GDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDLDSNPTKLIEVVEIGKQLLI 569 (681)
T ss_pred CCCCCcchhhhhcchhhhhccccHHHHHhhcccccCCCccceehHhhhhhhhee
Confidence 999999999999999999999999999999999999999999999999998653
No 29
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=2.4e-60 Score=601.39 Aligned_cols=567 Identities=19% Similarity=0.219 Sum_probs=413.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCC-CcceeEEEEeCCCCCCCCEEEEcCCCcc
Q 001896 395 PTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKV-GKCIEEREIDALLIQSGDTLKVLPGTKL 473 (998)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~-g~~~~~~~i~~~~l~~GDii~v~~G~~i 473 (998)
..++...++++++..++.++|++.++++++.++ +..++|+ |+ | ++++|++++|+|||+|.|++||+|
T Consensus 51 ~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~n------~~~~~v~---~~~~---~~~~i~~~~l~~GDiv~l~~g~~i 118 (1057)
T TIGR01652 51 GTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEVN------NRLTEVL---EGHG---QFVEIPWKDLRVGDIVKVKKDERI 118 (1057)
T ss_pred cHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHHh------CcEEEEE---CCCC---cEEEeeeecccCCCEEEEcCCCcc
Confidence 344445555666667899999999998886543 4678888 65 6 578999999999999999999999
Q ss_pred cccEEEEe-----cceeeecccccCcCcccccCCC---------------------------------------------
Q 001896 474 PADGIVVW-----GTSYVNESMVTGEAVPVLKEIN--------------------------------------------- 503 (998)
Q Consensus 474 PaDg~vl~-----G~~~Vdes~LTGEs~pv~k~~g--------------------------------------------- 503 (998)
|||++|++ |.+.||||.||||+.|+.|++.
T Consensus 119 PaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l 198 (1057)
T TIGR01652 119 PADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYPL 198 (1057)
T ss_pred cceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCcccC
Confidence 99999998 7789999999999999988631
Q ss_pred ---Cceecceeeee-ceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc
Q 001896 504 ---SPVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVL 579 (998)
Q Consensus 504 ---~~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~ 579 (998)
+.++.||.+.+ |.+.+.|++||.+|.+++. ....+.+++++++..+++..+++.+.++++++++++..++...
T Consensus 199 ~~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n---~~~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~~~ 275 (1057)
T TIGR01652 199 SPDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRN---ATQAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGAGIWNDA 275 (1057)
T ss_pred CHHHhHhcCCEecCCCeEEEEEEEEchhhhhhhc---CCCCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHheecc
Confidence 34678888888 9999999999999988664 3344667899999999999888877777777666654333211
Q ss_pred CCCCCcccC-------CCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHH------HHHHhc----CcEEecchHHH
Q 001896 580 GAYPEQWLP-------ENGTHFVFALMFSISVVVIACPCALGLATPTAVMVAT------GVGANN----GVLIKGGDALE 642 (998)
Q Consensus 580 ~~~~~~~~~-------~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~------~~~~k~----gilvk~~~~le 642 (998)
.....|.. .....+...+.+++.++...+|.+|+..+.++..... .+|.++ ++++|+.+.+|
T Consensus 276 -~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~L~~~~IPisL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~E 354 (1057)
T TIGR01652 276 -HGKDLWYIRLDVSERNAAANGFFSFLTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNE 354 (1057)
T ss_pred -cCCCccceecCcccccchhHHHHHHHHHHHHHhhhcceeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCChH
Confidence 11112311 0112355577888899999999999999999988888 677764 59999999999
Q ss_pred hhcCCcEEEecCCCccccCceEEEEEEecCC-----CC------------------------------------------
Q 001896 643 RAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-----MD------------------------------------------ 675 (998)
Q Consensus 643 ~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~-----~~------------------------------------------ 675 (998)
+||++++||+|||||||+|+|+++++...+. .+
T Consensus 355 ~LG~v~~I~sDKTGTLT~N~M~~~~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1057)
T TIGR01652 355 ELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFTEIKDAIRERLGSYVENENSMLVESKGFTFVDPRLVDLLKTNK 434 (1057)
T ss_pred HhcCeeEEEEcCCCceeeeeEEEEEEEECCEEecCCcchHHHHhhhcccccccccccccccccccccCcHHHHHhhhcCC
Confidence 9999999999999999999999999864311 00
Q ss_pred -----HHHHHHHHHHh-----h---c-------cCCChHHHHHHHHHHhcCCCCCCCCCCC-C-CCcccccCCCcccccc
Q 001896 676 -----RGEFLTLVASA-----E---A-------SSEHPLAKAVVEYARHFHFFDDPSLNPD-G-QSHSKESTGSGWLLDV 733 (998)
Q Consensus 676 -----~~~~l~~~~~~-----~---~-------~~~hp~~~ai~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 733 (998)
..+++...+.+ + . ...+|.+.|++++++..|+.-..+.... . ............+...
T Consensus 435 ~~~~~~~~~l~~l~lC~~v~~~~~~~~~~~~~y~~~sp~E~ALl~~a~~~g~~~~~~~~~~~~~~i~~~~~~~~~~il~~ 514 (1057)
T TIGR01652 435 PNAKRINEFFLALALCHTVVPEFNDDGPEEITYQAASPDEAALVKAARDVGFVFFERTPKSISLLIEMHGETKEYEILNV 514 (1057)
T ss_pred chhHHHHHHHHHHHhcCcccccccCCCCCceEEEccCCcHHHHHHHHHHCCCEEEEecCCceEEEEEeCCCEEEEEEEEe
Confidence 01222211111 1 1 1368999999999988765311110000 0 0000000001223334
Q ss_pred cceeeecCC-eEEEEEc-Ce--EEEEeeHhhhhhcCC----CCChhhHHHHHHHHHcCCeEEEEEE--------------
Q 001896 734 SDFSALPGR-GIQCFIS-GK--QVLVGNRKLLNESGI----TIPDHVESFVVELEESARTGILVAY-------------- 791 (998)
Q Consensus 734 ~~~~~~~g~-gi~~~~~-g~--~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~i~va~-------------- 791 (998)
.+|++..++ .+..... |+ .+..|+++.+..... ...+...+..+++..+|.|++++|+
T Consensus 515 ~pF~s~rKrmSviv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~~~~a~~GlRtL~~A~k~l~~~e~~~~~~~ 594 (1057)
T TIGR01652 515 LEFNSDRKRMSVIVRNPDGRIKLLCKGADTVIFKRLSSGGNQVNEETKEHLENYASEGLRTLCIAYRELSEEEYEEWNEE 594 (1057)
T ss_pred cccCCCCCeEEEEEEeCCCeEEEEEeCcHHHHHHHhhccchhHHHHHHHHHHHHHHcCCcEEEEEEEECCHHHHHHHHHH
Confidence 455555443 2222221 22 344577766544211 1234456677889999999999985
Q ss_pred ------------------------CCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc---
Q 001896 792 ------------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--- 844 (998)
Q Consensus 792 ------------------------~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~--- 844 (998)
|.+++|+++++|++|++++++|+.||++|+++||+|||+.++|..+|+++|+.
T Consensus 595 ~~~a~~~~~~r~~~~~~~~~~iE~~L~~lG~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~ 674 (1057)
T TIGR01652 595 YNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRN 674 (1057)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhcCEEEEEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCC
Confidence 45799999999999999999999999999999999999999999999988751
Q ss_pred -----------------------------------------------------------------------eEEEecCcc
Q 001896 845 -----------------------------------------------------------------------DVMADVMPA 853 (998)
Q Consensus 845 -----------------------------------------------------------------------~~~~~~~p~ 853 (998)
.+++|++|+
T Consensus 675 ~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~ 754 (1057)
T TIGR01652 675 MEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPS 754 (1057)
T ss_pred CeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHH
Confidence 179999999
Q ss_pred cHHHHHHHHhhc-CCEEEEEcCCCCCHHHHhcCCeEEEec-CchHHHHHhcCEEEecCChhHHHHHH-HHHHHHHHHHHH
Q 001896 854 GKADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAI-DLSRKTFARIRL 930 (998)
Q Consensus 854 ~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i-~~~r~~~~~i~~ 930 (998)
||.++|+.+|+. |+.|+|+|||.||++||++|||||++. .....|+.+||+++. +|..+.+++ .+||..++++++
T Consensus 755 qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdVGIgi~g~eg~qA~~aaD~~i~--~F~~L~~lll~~GR~~~~r~~~ 832 (1057)
T TIGR01652 755 QKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADVGVGISGKEGMQAVMASDFAIG--QFRFLTKLLLVHGRWSYKRISK 832 (1057)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcCeeeEecChHHHHHHHhhhhhhh--hHHHHHHHHHhhCHHHHHHHHH
Confidence 999999999998 999999999999999999999999874 333368899999995 499999987 779999999999
Q ss_pred HHHHHHHHHHHHHHHHh-h-hccccCCCCccHHHHHHHhhhhhHHHhhhcccc
Q 001896 931 NYIFAMAYNVIAIPIAA-G-VFFPSLGIKLPPWAAGACMALSSVSVVCSSLLL 981 (998)
Q Consensus 931 n~~~~~~~n~~~i~~a~-g-~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l 981 (998)
.+.|.+.-|++.+.+.+ + ++..|.| .+|+-...++....+...+.++.+
T Consensus 833 ~i~~~~~kn~~~~~~~~~~~~~~~~s~--~~~~~~~~l~~~n~~~t~lp~~~l 883 (1057)
T TIGR01652 833 MILYFFYKNLIFAIIQFWYSFYNGFSG--QTLYEGWYMVLYNVFFTALPVISL 883 (1057)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999986654432 2 2222223 234444444445555555555444
No 30
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=6.8e-54 Score=535.56 Aligned_cols=583 Identities=16% Similarity=0.173 Sum_probs=402.6
Q ss_pred HHHHHHHHHHHhhhcC---CCCCchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEE
Q 001896 376 AYFYSVGALLYGVVTG---FWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEER 452 (998)
Q Consensus 376 a~~~s~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~ 452 (998)
+++|.++..++..+.. .....++...++++++..++.++|++.++|+++.++ +..++++ ++| +++
T Consensus 115 aN~YFL~I~ilq~ip~~s~~~~~t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N------~~~~~v~---~~~---~~~ 182 (1178)
T PLN03190 115 AYIYFLVIAVLNQLPQLAVFGRGASILPLAFVLLVTAVKDAYEDWRRHRSDRIEN------NRLAWVL---VDD---QFQ 182 (1178)
T ss_pred hhHHHHHHHHHHhCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc------CcEEEEE---ECC---eEE
Confidence 3445544444444432 222334445566666777999999999999988764 3577877 667 578
Q ss_pred EEeCCCCCCCCEEEEcCCCcccccEEEEe-----cceeeecccccCcCcccccCCCCc----------------------
Q 001896 453 EIDALLIQSGDTLKVLPGTKLPADGIVVW-----GTSYVNESMVTGEAVPVLKEINSP---------------------- 505 (998)
Q Consensus 453 ~i~~~~l~~GDii~v~~G~~iPaDg~vl~-----G~~~Vdes~LTGEs~pv~k~~g~~---------------------- 505 (998)
++++++|+|||+|+|++||+||||++|++ |.++||+|.||||+.|+.|.+++.
T Consensus 183 ~i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~ 262 (1178)
T PLN03190 183 EKKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNR 262 (1178)
T ss_pred EEeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhhceEEEEEeCCCc
Confidence 99999999999999999999999999998 889999999999999999975421
Q ss_pred ---eecceeeee---------------------ceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHH
Q 001896 506 ---VIGGTINLH---------------------GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPI 561 (998)
Q Consensus 506 ---v~aGt~~~~---------------------g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (998)
-|.|++..+ ..+.+.|++||.+|.... ....++.+++++++..+++..+++.+
T Consensus 263 ~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i~GvVVYTG~dTK~~~---N~~~~~~K~S~le~~~N~~vi~l~~i 339 (1178)
T PLN03190 263 NIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVYCGRETKAML---NNSGAPSKRSRLETRMNLEIIILSLF 339 (1178)
T ss_pred cceeEEEEEEECCCcccCCccceeeccceecCCceEEEEEEEechhhhHhh---cCCCCCCCccHHHHHHhHHHHHHHHH
Confidence 123333332 258899999999997422 22234467899999999999888877
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC---CcccCC------CC-----cc----HHHHHHHHhhhhhhhccccchhhHHHHHHH
Q 001896 562 VVTLALFTWLCWYVAGVLGAYP---EQWLPE------NG-----TH----FVFALMFSISVVVIACPCALGLATPTAVMV 623 (998)
Q Consensus 562 ~l~~a~~~~i~~~~~~~~~~~~---~~~~~~------~~-----~~----~~~~~~~~isvlv~~~P~aL~la~p~~~~~ 623 (998)
.++++++++++..++....... ..|... .. .. +...+..++.++...+|.+|.+.+.+....
T Consensus 340 ~~~l~~i~~i~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~lil~~~~IPISL~Vtleivk~~ 419 (1178)
T PLN03190 340 LIALCTIVSVCAAVWLRRHRDELDTIPFYRRKDFSEGGPKNYNYYGWGWEIFFTFLMSVIVFQIMIPISLYISMELVRVG 419 (1178)
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhhcceeeeeeHHHHHHH
Confidence 7777777666543321101000 011100 00 01 122333344555688999999999999866
Q ss_pred HHHHHHhc----------CcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecC----C-C--------------
Q 001896 624 ATGVGANN----------GVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFT----K-M-------------- 674 (998)
Q Consensus 624 ~~~~~~k~----------gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~----~-~-------------- 674 (998)
....+.+. ++.+|+.+..|+||+|++||+|||||||+|+|.++++...+ + .
T Consensus 420 qa~~I~~D~~m~~~~~~~~~~vr~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i~g~~y~~~~~~~~~~~~~~~~~~ 499 (1178)
T PLN03190 420 QAYFMIRDDQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSDGRTPTQNDHAGYSVEV 499 (1178)
T ss_pred HHHHHHhhhhcccccCCCcceeccCcchhhhccceEEEEcCCCccccceEEEEEEEECCEEcccccccchhhhhcccccc
Confidence 45555432 37899999999999999999999999999999999986521 0 0
Q ss_pred -------------------------C-H-----HHHHHHHHH---h-----h-----------ccCCChHHHHHHHHHHh
Q 001896 675 -------------------------D-R-----GEFLTLVAS---A-----E-----------ASSEHPLAKAVVEYARH 704 (998)
Q Consensus 675 -------------------------~-~-----~~~l~~~~~---~-----~-----------~~~~hp~~~ai~~~~~~ 704 (998)
+ + .+++...+. + + ..+.+|.+.|++++++.
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~lalChtv~~~~~~~~~~~~~~~~~Y~a~SPdE~ALv~~a~~ 579 (1178)
T PLN03190 500 DGKILRPKMKVKVDPQLLELSKSGKDTEEAKHVHDFFLALAACNTIVPIVVDDTSDPTVKLMDYQGESPDEQALVYAAAA 579 (1178)
T ss_pred ccccccccccccCCHHHHhhhhccccchhhHHHHHHHHHHHhcCCceeeccCCCCCccccceEEecCCCcHHHHHHHHHH
Confidence 0 0 112222221 1 0 12347999999999998
Q ss_pred cCCCCCCCCCCCCCCcccccCCCcccccccceeeecCCe-EEEEE-cCe--EEEEeeHhhhhhcC-----CCCChhhHHH
Q 001896 705 FHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRG-IQCFI-SGK--QVLVGNRKLLNESG-----ITIPDHVESF 775 (998)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-i~~~~-~g~--~~~~g~~~~~~~~~-----~~~~~~~~~~ 775 (998)
.|+.-..+....-............+....+|++..++. +.... +|+ .+..|+++.+.+.- .......++.
T Consensus 580 ~G~~l~~r~~~~i~i~~~~~~~~~~il~~~pF~S~rKrMSvIv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~ 659 (1178)
T PLN03190 580 YGFMLIERTSGHIVIDIHGERQRFNVLGLHEFDSDRKRMSVILGCPDKTVKVFVKGADTSMFSVIDRSLNMNVIRATEAH 659 (1178)
T ss_pred CCCeEecccCCeEEEeeccceecceeEEEecccccccEEEEEEEcCCCcEEEEEecCcHHHHHhhcccccchhHHHHHHH
Confidence 876211111111000000011122334445565554432 21111 122 23446666654321 1123445667
Q ss_pred HHHHHHcCCeEEEEEE--------------------------------------CCeEEEEEEecCCCcHhHHHHHHHHH
Q 001896 776 VVELEESARTGILVAY--------------------------------------DDNLIGVMGIADPVKREAAVVVEGLL 817 (998)
Q Consensus 776 ~~~~~~~g~~~i~va~--------------------------------------~~~~lG~i~l~d~~r~~~~~~i~~l~ 817 (998)
.+++..+|+|++++|| |++++|+++++|++|++++++|+.|+
T Consensus 660 l~~~a~~GlRtL~lA~k~l~~~e~~~~~~~~~~a~~~~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr~~v~~~I~~l~ 739 (1178)
T PLN03190 660 LHTYSSLGLRTLVVGMRELNDSEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILGASAIEDKLQQGVPEAIESLR 739 (1178)
T ss_pred HHHHHhcCCceEEEEEEeCCHHHHhhHHHHHHHhhhhhhhhHHHHHhhHHhhhcCcEEEEEEEEecCCchhHHHHHHHHH
Confidence 7889999999999874 45799999999999999999999999
Q ss_pred hCCCEEEEEcCCCHHHHHHHHHHhCcc-----------------------------------------------------
Q 001896 818 KMGVRPVMVTGDNWRTAHAVAREIGIQ----------------------------------------------------- 844 (998)
Q Consensus 818 ~~gi~~~i~tgd~~~~a~~ia~~~gi~----------------------------------------------------- 844 (998)
++|++++|+|||+..+|..||+.+|+.
T Consensus 740 ~agi~v~mlTGD~~~tAi~IA~s~~Ll~~~~~~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1178)
T PLN03190 740 TAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSKESCRKSLEDALVMSKKLTTVSGISQNTGGSSAAASDPVA 819 (1178)
T ss_pred HCCCEEEEECCCCHHHHHHHHHHhCCCCCCCeeEEecCCchhhHHHHHHHHhhhhhhccccccccccccccccccCCceE
Confidence 999999999999999999999855440
Q ss_pred -----------------------------eEEEecCcccHHHHHHHHhhc-CCEEEEEcCCCCCHHHHhcCCeEEEec-C
Q 001896 845 -----------------------------DVMADVMPAGKADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMAIG-A 893 (998)
Q Consensus 845 -----------------------------~~~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia~~-~ 893 (998)
-+++|++|+||.++|+.+|+. ++.|+|+|||.||++||++|||||++. .
T Consensus 820 lVIdG~~L~~~l~~~~~~~f~~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGDGaNDv~mIq~AdVGIGIsG~ 899 (1178)
T PLN03190 820 LIIDGTSLVYVLDSELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQ 899 (1178)
T ss_pred EEEEcHHHHHHhhhHHHHHHHHHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECCCcchHHHHHhcCeeeeecCc
Confidence 168999999999999999987 578999999999999999999999863 3
Q ss_pred chHHHHHhcCEEEecCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccccCCCCccHHHHHHHhh--
Q 001896 894 GTDIAIEAADYVLMRNSLEDVIIAID-LSRKTFARIRLNYIFAMAYNVIAIPIAA--GVFFPSLGIKLPPWAAGACMA-- 968 (998)
Q Consensus 894 ~~~~~~~~ad~vl~~~~~~~l~~~i~-~~r~~~~~i~~n~~~~~~~n~~~i~~a~--g~~~~~~g~~l~p~~a~~~m~-- 968 (998)
....|..+||+.+ ..|..|.+++. .||..++++.+.+.|.|.-|++....-+ +++..|.| ++++-.+.+.
T Consensus 900 EG~qA~~aSDfaI--~~Fr~L~rLLlvHGr~~y~R~s~~i~y~fYKN~~~~~~qf~f~~~~~fSg---~~ly~~~~~~~y 974 (1178)
T PLN03190 900 EGRQAVMASDFAM--GQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTCFTL---TTAINEWSSVLY 974 (1178)
T ss_pred hhHHHHHhhccch--hhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHH
Confidence 3347888999999 66999999887 6999999999999999999987654432 44443434 4433333332
Q ss_pred ---hhhHHHhhhc
Q 001896 969 ---LSSVSVVCSS 978 (998)
Q Consensus 969 ---~ss~~v~~~s 978 (998)
+.|+.++.-+
T Consensus 975 N~~fTslPii~~~ 987 (1178)
T PLN03190 975 SVIYTALPTIVVG 987 (1178)
T ss_pred HHHHHhHHHHHHH
Confidence 3555555543
No 31
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-51 Score=456.70 Aligned_cols=476 Identities=22% Similarity=0.255 Sum_probs=340.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcC---CC
Q 001896 395 PTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLP---GT 471 (998)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~---G~ 471 (998)
.+||+.+..-++++..-+.--.++|.|+...++.+ ...|....|. |++ +|+.+..+||.|||+|-|.. ..
T Consensus 214 DeyWYySlFtLfMli~fE~tlV~Qrm~~lse~R~M-g~kpy~I~v~---R~k---KW~~l~seeLlPgDvVSI~r~~ed~ 286 (1160)
T KOG0209|consen 214 DEYWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTM-GNKPYTINVY---RNK---KWVKLMSEELLPGDVVSIGRGAEDS 286 (1160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEEE---ecC---cceeccccccCCCceEEeccCcccC
Confidence 45555444444433333333344555555555554 3445666666 777 57999999999999999998 56
Q ss_pred cccccEEEEecceeeecccccCcCcccccCC-----------------CCceecceeee-------------eceEEEEE
Q 001896 472 KLPADGIVVWGTSYVNESMVTGEAVPVLKEI-----------------NSPVIGGTINL-------------HGVLHIQA 521 (998)
Q Consensus 472 ~iPaDg~vl~G~~~Vdes~LTGEs~pv~k~~-----------------g~~v~aGt~~~-------------~g~~~~~v 521 (998)
.||||.+++.|+|.|||++|||||.|..|++ ...+|+||.+. +|.+.+.|
T Consensus 287 ~vPCDllLL~GsciVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~V 366 (1160)
T KOG0209|consen 287 HVPCDLLLLRGSCIVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYV 366 (1160)
T ss_pred cCCceEEEEecceeechhhhcCCCccccccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEE
Confidence 8999999999999999999999999999965 12489999875 47889999
Q ss_pred EEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHH
Q 001896 522 TKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFS 601 (998)
Q Consensus 522 ~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (998)
++||-+|.-|++.+.+.-...+-+. -++-+.+|+.+.+++|+++....+.-|.-. ...+-.+.+.-.
T Consensus 367 lrTGFeTSQGkLvRtilf~aervTa----Nn~Etf~FILFLlVFAiaAa~Yvwv~Gskd---------~~RsrYKL~LeC 433 (1160)
T KOG0209|consen 367 LRTGFETSQGKLVRTILFSAERVTA----NNRETFIFILFLLVFAIAAAGYVWVEGSKD---------PTRSRYKLFLEC 433 (1160)
T ss_pred EeccccccCCceeeeEEecceeeee----ccHHHHHHHHHHHHHHHHhhheEEEecccC---------cchhhhheeeee
Confidence 9999999999987765443222221 122333344444444433322111111100 011223334445
Q ss_pred hhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCCC-------
Q 001896 602 ISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM------- 674 (998)
Q Consensus 602 isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~~------- 674 (998)
+-++...+|.-||+=+++++-.++..++|.||+|..|-++.-+|++|..|||||||||+..|.|.++-.....
T Consensus 434 ~LIlTSVvPpELPmELSmAVNsSL~ALak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~~~~~~ 513 (1160)
T KOG0209|consen 434 TLILTSVVPPELPMELSMAVNSSLIALAKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEGALTPA 513 (1160)
T ss_pred eEEEeccCCCCCchhhhHHHHHHHHHHHHhceeecCccccccCCceeEEEecCCCccccccEEEEecccccCCcccccch
Confidence 5667777899999988999999999999999999999999999999999999999999999999998653221
Q ss_pred ---CHHHHHHHH--HHh---h-ccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCCcccccccceeee-cCCeE
Q 001896 675 ---DRGEFLTLV--ASA---E-ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSAL-PGRGI 744 (998)
Q Consensus 675 ---~~~~~l~~~--~~~---~-~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~gi 744 (998)
..+.+.-++ +++ + .-..+|+++|.++...+.--.++....+++... ...+..-..|.+. ..+.+
T Consensus 514 s~~p~~t~~vlAscHsLv~le~~lVGDPlEKA~l~~v~W~~~k~~~v~p~~~~~~------~lkI~~ryhFsSaLKRmsv 587 (1160)
T KOG0209|consen 514 SKAPNETVLVLASCHSLVLLEDKLVGDPLEKATLEAVGWNLEKKNSVCPREGNGK------KLKIIQRYHFSSALKRMSV 587 (1160)
T ss_pred hhCCchHHHHHHHHHHHHHhcCcccCChHHHHHHHhcCcccccCcccCCCcCCCc------ccchhhhhhHHHHHHHHHh
Confidence 122222222 222 2 235799999999988654222222222222111 0111111112211 11111
Q ss_pred EEEEcC-----e--EEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEE---------------------CCeEE
Q 001896 745 QCFISG-----K--QVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY---------------------DDNLI 796 (998)
Q Consensus 745 ~~~~~g-----~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~---------------------~~~~l 796 (998)
.+..++ + .-..|.++.++..-.++|.++++.+.++..+|.|+++++| |+.|.
T Consensus 588 va~~~~~g~s~k~~~aVKGAPEvi~~ml~dvP~dY~~iYk~ytR~GsRVLALg~K~l~~~~~~q~rd~~Re~vEsdLtFa 667 (1160)
T KOG0209|consen 588 VASHQGPGSSEKYFVAVKGAPEVIQEMLRDVPKDYDEIYKRYTRQGSRVLALGYKPLGDMMVSQVRDLKREDVESDLTFA 667 (1160)
T ss_pred hhhcccCCCceEEEEEecCCHHHHHHHHHhCchhHHHHHHHHhhccceEEEEecccccccchhhhhhhhhhhhhhcceee
Confidence 111111 1 2234778888777677899999999999999999999987 56899
Q ss_pred EEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc--------------------------------
Q 001896 797 GVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-------------------------------- 844 (998)
Q Consensus 797 G~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~-------------------------------- 844 (998)
|++.|.-|+|+|++++|+.|.+.+++++|+|||++.+|.++|+++||.
T Consensus 668 GFlif~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~ 747 (1160)
T KOG0209|consen 668 GFLIFSCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLK 747 (1160)
T ss_pred eeEEEeCCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeecCC
Confidence 999999999999999999999999999999999999999999999995
Q ss_pred -------------------------------------eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhcCCe
Q 001896 845 -------------------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADV 887 (998)
Q Consensus 845 -------------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~v 887 (998)
.+|+|+.|.||..++..+++.|+.++|+|||.||..||++|||
T Consensus 748 p~~~~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGDGTNDVGALK~AhV 827 (1160)
T KOG0209|consen 748 PGKKKTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGDGTNDVGALKQAHV 827 (1160)
T ss_pred CCccchhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecCCCcchhhhhhccc
Confidence 2999999999999999999999999999999999999999999
Q ss_pred EEEecCchH
Q 001896 888 GMAIGAGTD 896 (998)
Q Consensus 888 gia~~~~~~ 896 (998)
|||+-+++.
T Consensus 828 GVALL~~~~ 836 (1160)
T KOG0209|consen 828 GVALLNNPE 836 (1160)
T ss_pred ceehhcCCh
Confidence 999975443
No 32
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-45 Score=399.83 Aligned_cols=507 Identities=21% Similarity=0.256 Sum_probs=365.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCccc
Q 001896 395 PTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLP 474 (998)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iP 474 (998)
..||....+++++.++...+++..|++.++..++ +...+.. |+|. ...|++++++||+|+++.+++||
T Consensus 129 ~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Ns------e~y~~lt--r~~~----~~~~Ss~i~vGDvi~v~K~~RVP 196 (1051)
T KOG0210|consen 129 STYWGPLGFVLTITLIKEAVDDLKRRRRDRELNS------EKYTKLT--RDGT----RREPSSDIKVGDVIIVHKDERVP 196 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhheeec--cCCc----ccccccccccccEEEEecCCcCC
Confidence 4566667778888889999999988876665554 2223332 6662 33499999999999999999999
Q ss_pred ccEEEEe-----cceeeecccccCcCcccccCC-----------------------------------------------
Q 001896 475 ADGIVVW-----GTSYVNESMVTGEAVPVLKEI----------------------------------------------- 502 (998)
Q Consensus 475 aDg~vl~-----G~~~Vdes~LTGEs~pv~k~~----------------------------------------------- 502 (998)
||.+++. |++.|-+..|+||.....|-+
T Consensus 197 ADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~Lsv 276 (1051)
T KOG0210|consen 197 ADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSV 276 (1051)
T ss_pred cceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcccc
Confidence 9999996 789999999999976655511
Q ss_pred CCceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 001896 503 NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAY 582 (998)
Q Consensus 503 g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~ 582 (998)
.+.++|+|++.+|.+.+.|++||.+|+..-- ...++.+-..++...+.+.+++...+++++++.... .+
T Consensus 277 entLWanTVvAs~t~~gvVvYTG~dtRsvMN---ts~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~---~g----- 345 (1051)
T KOG0210|consen 277 ENTLWANTVVASGTAIGVVVYTGRDTRSVMN---TSRPRSKVGLLELEINGLTKILFCFVLVLSIVMVAM---KG----- 345 (1051)
T ss_pred cceeeeeeeEecCcEEEEEEEecccHHHHhc---cCCcccccceeeeecccHHHHHHHHHHHHHHHHHHh---hc-----
Confidence 3568999999999999999999999965211 112223333456678888888888877777654331 11
Q ss_pred CCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHh----cCcEEecchHHHhhcCCcEEEecCCCcc
Q 001896 583 PEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGAN----NGVLIKGGDALERAQKIKYVIFDKTGTL 658 (998)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k----~gilvk~~~~le~lg~v~~i~fDKTGTL 658 (998)
.+++|...+++++-++...+|..|...+.++-..-.....+ .|.++|..+.-|+||++.++..||||||
T Consensus 346 -------~~~~wyi~~~RfllLFS~IIPISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeLGRIsylLtDKTGTL 418 (1051)
T KOG0210|consen 346 -------FGSDWYIYIIRFLLLFSSIIPISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEELGRISYLLTDKTGTL 418 (1051)
T ss_pred -------CCCchHHHHHHHHHHHhhhceeEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHhcceEEEEecCcCcc
Confidence 13578889999999999999999999998887776666543 4789999999999999999999999999
Q ss_pred ccCceEEEEEEecC----CCCHHHHHHHHHHhhcc-----------CCChHHH---------------------------
Q 001896 659 TQGRATVTTAKVFT----KMDRGEFLTLVASAEAS-----------SEHPLAK--------------------------- 696 (998)
Q Consensus 659 T~~~~~v~~i~~~~----~~~~~~~l~~~~~~~~~-----------~~hp~~~--------------------------- 696 (998)
|+|+|.+++++... ...-+++-+..+++... ..||+..
T Consensus 419 TqNEM~~KKiHLGTv~~s~e~~~eV~~~i~s~~~~~~~~~~~~~~~~k~~~s~rv~~~V~alalCHNVTPv~e~~ge~sY 498 (1051)
T KOG0210|consen 419 TQNEMEFKKIHLGTVAYSAETMDEVSQHIQSLYTPGRNKGKGALSRVKKDMSARVRNAVLALALCHNVTPVFEDDGEVSY 498 (1051)
T ss_pred ccchheeeeeeeeeeeccHhHHHHHHHHHHHhhCCCcccccccchhhcCcccHHHHHHHHHHHHhccCCcccCCCceEEe
Confidence 99999999998642 22233443333333311 1133322
Q ss_pred --------HHHHHHHhcCCCCCCCCCC-CCCCcccccCCCcccccccceeeecC-CeEEEEEc--Ce--EEEEeeHhhhh
Q 001896 697 --------AVVEYARHFHFFDDPSLNP-DGQSHSKESTGSGWLLDVSDFSALPG-RGIQCFIS--GK--QVLVGNRKLLN 762 (998)
Q Consensus 697 --------ai~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g-~gi~~~~~--g~--~~~~g~~~~~~ 762 (998)
|+++..+..|.....+... -.............++.+.+|.+..+ +||...-. |+ -+..|....+
T Consensus 499 QAaSPDEVAiVkwTe~VGl~L~~Rd~~~itL~~~~~~~~~yqIL~vFPFtsEtKRMGIIVr~e~~~evtfylKGAD~VM- 577 (1051)
T KOG0210|consen 499 QAASPDEVAIVKWTETVGLKLAKRDRHAITLRVPLDDELNYQILQVFPFTSETKRMGIIVRDETTEEVTFYLKGADVVM- 577 (1051)
T ss_pred ecCCCCeEEEEEeeeecceEEeecccceEEEecCCCcceeEEEEEEeccccccceeeEEEecCCCceEEEEEecchHHH-
Confidence 2222221111100000000 00000011111333444555655543 46655443 33 2233444333
Q ss_pred hcCCCCChhhHHHHHHHHHcCCeEEEEEE---------------------------------------CCeEEEEEEecC
Q 001896 763 ESGITIPDHVESFVVELEESARTGILVAY---------------------------------------DDNLIGVMGIAD 803 (998)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~g~~~i~va~---------------------------------------~~~~lG~i~l~d 803 (998)
..=....+++++...++..+|.|++.+|. |.+++|+.+.||
T Consensus 578 s~iVq~NdWleEE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVED 657 (1051)
T KOG0210|consen 578 SGIVQYNDWLEEECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLSISDRDQKMANVVERYLERDLELLGLTGVED 657 (1051)
T ss_pred hcccccchhhhhhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCccchHHHHHHHHHHHHHHhhhHHhcccChHH
Confidence 33344556677777778889999998876 558999999999
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc---------------------------------------
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--------------------------------------- 844 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~--------------------------------------- 844 (998)
.++++++.+++.||++|+++||+|||..++|..+|+..++.
T Consensus 658 kLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~G~S 737 (1051)
T KOG0210|consen 658 KLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVIDGES 737 (1051)
T ss_pred HHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEcCch
Confidence 99999999999999999999999999999999999998874
Q ss_pred ---------------------eEEEecCcccHHHHHHHHhhc-CCEEEEEcCCCCCHHHHhcCCeEEEe-cCchHHHHHh
Q 001896 845 ---------------------DVMADVMPAGKADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMAI-GAGTDIAIEA 901 (998)
Q Consensus 845 ---------------------~~~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia~-~~~~~~~~~~ 901 (998)
.+++|++|.||+++++.+|+. |++|+.+|||-||..|+++||+||++ |.....|.-+
T Consensus 738 l~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~krvc~IGDGGNDVsMIq~A~~GiGI~gkEGkQASLA 817 (1051)
T KOG0210|consen 738 LEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTGKRVCAIGDGGNDVSMIQAADVGIGIVGKEGKQASLA 817 (1051)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhCceEEEEcCCCccchheeecccceeeecccccccchh
Confidence 289999999999999999875 88999999999999999999999999 4556677789
Q ss_pred cCEEEecCChhHHHHHHHH-HHHHHHHHHHHHHH
Q 001896 902 ADYVLMRNSLEDVIIAIDL-SRKTFARIRLNYIF 934 (998)
Q Consensus 902 ad~vl~~~~~~~l~~~i~~-~r~~~~~i~~n~~~ 934 (998)
||+.+ ..|+.+-+++.+ ||+.|++--+--+|
T Consensus 818 ADfSI--tqF~Hv~rLLl~HGR~SYkrsa~laqf 849 (1051)
T KOG0210|consen 818 ADFSI--TQFSHVSRLLLWHGRNSYKRSAKLAQF 849 (1051)
T ss_pred ccccH--HHHHHHHHHhhccccchHHHHHHHHHH
Confidence 99998 559999988876 99988876554443
No 33
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=100.00 E-value=1e-40 Score=401.89 Aligned_cols=568 Identities=17% Similarity=0.191 Sum_probs=397.3
Q ss_pred HHHHHHHHHHHhhhc--CCCCCchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEEEEEecCCCcceeEEE
Q 001896 376 AYFYSVGALLYGVVT--GFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEERE 453 (998)
Q Consensus 376 a~~~s~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~ 453 (998)
|.+|.++..++..+. .+.........++++....+...+|++.|++.++.++. ..+.|. +++. ...+
T Consensus 60 aN~yFl~~~il~~ip~~~~~~~~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN~------~~~~v~---~~~~--~~~~ 128 (1151)
T KOG0206|consen 60 ANLYFLFIAILQFIPLSPFNPYTTLVPLLFVLGITAIKDAIEDYRRHKQDKEVNN------RKVEVL---RGDG--CFVE 128 (1151)
T ss_pred HHHHHHHHHHHHcCcccccCccceeeceeeeehHHHHHHHHhhhhhhhccHHhhc------ceeEEe---cCCc--eeee
Confidence 344555555554443 12222223334445556678999999999998887775 456666 4332 2688
Q ss_pred EeCCCCCCCCEEEEcCCCcccccEEEEe-----cceeeecccccCcCcccccCC--------------------------
Q 001896 454 IDALLIQSGDTLKVLPGTKLPADGIVVW-----GTSYVNESMVTGEAVPVLKEI-------------------------- 502 (998)
Q Consensus 454 i~~~~l~~GDii~v~~G~~iPaDg~vl~-----G~~~Vdes~LTGEs~pv~k~~-------------------------- 502 (998)
..+++|++||+|.+..++.+|||.++++ |.|+|+++.|+||.....|+.
T Consensus 129 ~~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~ 208 (1151)
T KOG0206|consen 129 KKWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPN 208 (1151)
T ss_pred eccceeeeeeEEEeccCCccccceEEecCCCCCceeEEEEeecCCccccceeeehhhhhcccccccccccCCceEEcCCc
Confidence 8999999999999999999999999997 668999999999987766632
Q ss_pred ---------------------CCceecceeeee-ceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHH
Q 001896 503 ---------------------NSPVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVP 560 (998)
Q Consensus 503 ---------------------g~~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (998)
.+.++.|+.+.+ ..+.+.|+.+|.+|.+.+-. ..++.+++++++..+.....+++
T Consensus 209 ~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~v~G~vv~tG~dtK~~~n~---~~~~~Krs~ier~~n~~i~~~~~ 285 (1151)
T KOG0206|consen 209 ANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEWVYGVVVFTGHDTKLMQNS---GKPPSKRSRIERKMNKIIILLFV 285 (1151)
T ss_pred ccHhhhhhheeeccCCCCCcHHHcccCCceeccCcEEEEEEEEcCCcchHHHhc---CCCccccchhhhhhhhhHHHHHH
Confidence 012345555554 45678999999999876543 33677889999999999888888
Q ss_pred HHHHHHHHHHHHHHHHhhcC--CCCCcccCCCC---ccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHH-------
Q 001896 561 IVVTLALFTWLCWYVAGVLG--AYPEQWLPENG---THFVFALMFSISVVVIACPCALGLATPTAVMVATGVG------- 628 (998)
Q Consensus 561 ~~l~~a~~~~i~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~------- 628 (998)
+.+.++++..+...++.... ..+..|..... ......+..++.++...+|..|..++.+.-.......
T Consensus 286 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~~il~~~liPISLyvsiEiik~~qs~fi~~D~~my 365 (1151)
T KOG0206|consen 286 LLILMCLISAIGFAIWTRQDGRHNGEWWYLSPSEAAYAGFVHFLTFIILYQYLIPISLYVSIEIVKVLQSIFINNDLDMY 365 (1151)
T ss_pred HHHHHHHHHHhhhheeeeecccccCchhhhcCchHHHHHHHHHHHHHhhhhceEEEEEEEEeeehHHHHHHHcchHHHhh
Confidence 88877777776655433211 11122322211 1345566677777788899999888887666554332
Q ss_pred ---HhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEecCC-----CC-------------------------
Q 001896 629 ---ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-----MD------------------------- 675 (998)
Q Consensus 629 ---~k~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~i~~~~~-----~~------------------------- 675 (998)
....+.+|..+.-|.||+|++|+.|||||||+|.|.+.++.+.+. .+
T Consensus 366 ~~e~d~~~~~rtsnl~eeLGqv~yIfSDKTGTLT~N~M~F~kCsi~g~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 445 (1151)
T KOG0206|consen 366 DEETDTPAQARTSNLNEELGQVEYIFSDKTGTLTQNSMEFKKCSINGTSYGRNVTEVEAALAKRSGGDVNEHKIKGFTFE 445 (1151)
T ss_pred hccCCCccccccCCchhhhcceeEEEEcCcCccccceeeeecccccCcccccCCChhhcccCccccccccccccccceec
Confidence 246789999999999999999999999999999999988765421 00
Q ss_pred -----------------HHHHHHHHHH--------------hhccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCccccc
Q 001896 676 -----------------RGEFLTLVAS--------------AEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKES 724 (998)
Q Consensus 676 -----------------~~~~l~~~~~--------------~~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (998)
..+++...+. +.+....|.+.|+++.+++.|+.-..+....-..+....
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~f~~~la~chtv~~e~~~~~~~~~Y~A~SPDE~AlV~aAr~~gf~f~~Rt~~~vti~~~g~ 525 (1151)
T KOG0206|consen 446 DSRLVDGLWSSEPQAEDILEFFRALALCHTVIPEKDEDSGKLSYEAESPDEAALVEAARELGFVFLGRTPDSVTIRELGV 525 (1151)
T ss_pred cchhhccccccccCcchHHHHhhHHhccceeeeccCCCccceeeecCCCcHHHHHHHHHhcCceeeeccCceEEEecccc
Confidence 0122222221 122356799999999999988753221111100000001
Q ss_pred CCCcccccccceeeecCC----------eEEEEEcCeEEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEE---
Q 001896 725 TGSGWLLDVSDFSALPGR----------GIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY--- 791 (998)
Q Consensus 725 ~~~~~~~~~~~~~~~~g~----------gi~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~--- 791 (998)
.....++.+.+|.+...+ .+..++||.+-.+-.+ +..++....+...+.++++..+|.|++++||
T Consensus 526 ~~~y~lL~iLeF~S~RKRMSVIVR~p~g~i~LycKGADsvI~er--L~~~~~~~~e~T~~Hl~~yA~eGLRTLc~A~r~l 603 (1151)
T KOG0206|consen 526 EETYELLNVLEFNSTRKRMSVIVRDPDGRILLYCKGADSVIFER--LSKNGEKLREKTQEHLEEYATEGLRTLCLAYREL 603 (1151)
T ss_pred ceeEEEEEEeccccccceeEEEEEcCCCcEEEEEcCcchhhHhh--hhhcchHHHHHHHHHHHHHHhhhhhHhhhhhhcc
Confidence 124455666667665443 3455556653322111 1112222223344567788999999999987
Q ss_pred -----------------------------------CCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHH
Q 001896 792 -----------------------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHA 836 (998)
Q Consensus 792 -----------------------------------~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ 836 (998)
|+.++|..++||+++++++++|+.|+++|||+||+|||..+||..
T Consensus 604 ~e~eY~~w~~~~~~A~ts~~~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiN 683 (1151)
T KOG0206|consen 604 DEEEYEEWNERYNEAKTSLTDREELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAIN 683 (1151)
T ss_pred CHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHHH
Confidence 568999999999999999999999999999999999999999999
Q ss_pred HHHHhCcc------------------------------------------------------------------------
Q 001896 837 VAREIGIQ------------------------------------------------------------------------ 844 (998)
Q Consensus 837 ia~~~gi~------------------------------------------------------------------------ 844 (998)
|+-.|++.
T Consensus 684 Ig~sC~Ll~~~m~~i~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~aLVIDGktl~~aL~~~~~~~Fl 763 (1151)
T KOG0206|consen 684 IGYSCRLLRQDMKLIIINTETSEELSSLDATAALKETLLRKFTEELEEAKLEHSEKPFALVIDGKTLAYALEDELRKKFL 763 (1151)
T ss_pred HHHhhcCCCCCceEEEEecCChhhhcchhhHHHHHHHHHHhhhHHHHHHhhccCcCCceEEEECHHHHhhhCchhhHHHH
Confidence 99877652
Q ss_pred --------eEEEecCcccHHHHHHHHhh-cCCEEEEEcCCCCCHHHHhcCCeEEEec-CchHHHHHhcCEEEecCChhHH
Q 001896 845 --------DVMADVMPAGKADAVRSFQK-DGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDV 914 (998)
Q Consensus 845 --------~~~~~~~p~~K~~~v~~l~~-~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l 914 (998)
.+++|++|.||+.+|+..++ .+..+++||||.||.+|++.|||||+++ .....|..++|+.+.. |.-+
T Consensus 764 ~la~~C~sViCCR~sPlQKA~Vv~lVk~~~~~~TLAIGDGANDVsMIQ~AhVGVGIsG~EGmQAvmsSD~AIaq--FrfL 841 (1151)
T KOG0206|consen 764 ELAKRCKSVICCRVSPLQKALVVKLVKKGLKAVTLAIGDGANDVSMIQEAHVGVGISGQEGMQAVMSSDFAIAQ--FRFL 841 (1151)
T ss_pred HHHHhcCEEEEccCCHHHHHHHHHHHHhcCCceEEEeeCCCccchheeeCCcCeeeccchhhhhhhcccchHHH--HHHH
Confidence 27889999999999999974 4779999999999999999999999996 5667788899998854 5555
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccHHH
Q 001896 915 IIAID-LSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWA 962 (998)
Q Consensus 915 ~~~i~-~~r~~~~~i~~n~~~~~~~n~~~i~~a~g~~~~~~g~~l~p~~ 962 (998)
.+++. +||-.+.++.+.+.+.|..|+.....-+ ++..|.|+.-+|+.
T Consensus 842 ~rLLLVHGhW~Y~R~a~~ilyfFYKNi~f~~~~f-wy~f~~gfSgq~~y 889 (1151)
T KOG0206|consen 842 ERLLLVHGHWSYIRLAKMILYFFYKNIAFTFTLF-WYQFFNGFSGQTLY 889 (1151)
T ss_pred hhhheeecceeHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCCCCccc
Confidence 55443 5999999999999999999987654432 33333444334433
No 34
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=6.7e-34 Score=302.20 Aligned_cols=223 Identities=30% Similarity=0.557 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCe-EEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEe
Q 001896 403 MLITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVW 481 (998)
Q Consensus 403 ~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~-~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~ 481 (998)
+++++++++.+++.+.++|.++.++++.+..+++ +.|. ||| +++++++++|+|||+|.+++||++||||+|++
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~---r~~---~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~ 74 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVI---RDG---RWQKIPSSELVPGDIIILKAGDIVPADGILLE 74 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEE---ETT---EEEEEEGGGT-TTSEEEEETTEBESSEEEEEE
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEE---ecc---ccccchHhhccceeeeecccccccccCcccee
Confidence 3677788999999999999999999999988887 6676 777 68999999999999999999999999999999
Q ss_pred -cceeeecccccCcCcccccC-----CCCceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhccCChHHHHHHHHH
Q 001896 482 -GTSYVNESMVTGEAVPVLKE-----INSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA 555 (998)
Q Consensus 482 -G~~~Vdes~LTGEs~pv~k~-----~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~ 555 (998)
|.+.||||.+|||+.|+.|. .|+.+|+||.+.+|.+.++|++||.+|..+++.+.+...+.+++++++..+++.
T Consensus 75 ~g~~~vd~s~ltGes~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00122_consen 75 SGSAYVDESALTGESEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIA 154 (230)
T ss_dssp SSEEEEECHHHHSBSSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHH
Confidence 99999999999999999999 999999999999999999999999999999999999988888899999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEE
Q 001896 556 SIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLI 635 (998)
Q Consensus 556 ~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~~~k~gilv 635 (998)
.++++++++++++++++|++. ....+|...+.+++++++.+|||+|++++|+++..++.++.++|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~~i~v 222 (230)
T PF00122_consen 155 KILIIIILAIAILVFIIWFFN------------DSGISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKNGIIV 222 (230)
T ss_dssp HHHHHHHHHHHHHHHHHCHTG------------STTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHhcccccchhhhccceec------------ccccccccccccccceeeeecccceeehHHHHHHHHHHHHHHCCEEE
Confidence 999999998888888766542 11346778889999999999999999999999999999999999999
Q ss_pred ecchHHHh
Q 001896 636 KGGDALER 643 (998)
Q Consensus 636 k~~~~le~ 643 (998)
|+++++|+
T Consensus 223 ~~~~a~E~ 230 (230)
T PF00122_consen 223 KNLSALEA 230 (230)
T ss_dssp SSTTHHHH
T ss_pred eCcccccC
Confidence 99999995
No 35
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.95 E-value=7.3e-28 Score=253.46 Aligned_cols=209 Identities=38% Similarity=0.584 Sum_probs=177.6
Q ss_pred CcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHhhccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCC
Q 001896 647 IKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTG 726 (998)
Q Consensus 647 v~~i~fDKTGTLT~~~~~v~~i~~~~~~~~~~~l~~~~~~~~~~~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (998)
||+||||||||||++++.+ .+ .+...++.++...+..+.||++.++..++.....
T Consensus 1 i~~i~fDktGTLt~~~~~v---~~---~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~------------------- 55 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV---AP---PSNEAALAIAAALEQGSEHPIGKAIVEFAKNHQW------------------- 55 (215)
T ss_dssp ESEEEEECCTTTBESHHEE---ES---CSHHHHHHHHHHHHCTSTSHHHHHHHHHHHHHHH-------------------
T ss_pred CeEEEEecCCCcccCeEEE---Ee---ccHHHHHHHHHHhhhcCCCcchhhhhhhhhhccc-------------------
Confidence 6899999999999999999 11 6778899999999999999999999999876420
Q ss_pred CcccccccceeeecCCeEEEEEcCeEEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCc
Q 001896 727 SGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVK 806 (998)
Q Consensus 727 ~~~~~~~~~~~~~~g~gi~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r 806 (998)
. .....+...++.|+...+++. +. |+.+++...+... .............+...+.++.+..++|.+.+.|++|
T Consensus 56 -~--~~~~~~~~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 129 (215)
T PF00702_consen 56 -S--KSLESFSEFIGRGISGDVDGI-YL-GSPEWIHELGIRV-ISPDLVEEIQESQGRTVIVLAVNLIFLGLFGLRDPLR 129 (215)
T ss_dssp -H--SCCEEEEEETTTEEEEEEHCH-EE-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCEEEEESHEEEEEEEEEEEBH
T ss_pred -h--hhhhhheeeeecccccccccc-cc-ccchhhhhccccc-cccchhhhHHHhhCCcccceeecCeEEEEEeecCcch
Confidence 0 015678889999999999988 44 8888877654321 1111222334556677788888999999999999999
Q ss_pred HhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce--EEEec--CcccH--HHHHHHHhhcCCEEEEEcCCCCCHH
Q 001896 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMADV--MPAGK--ADAVRSFQKDGSIVAMVGDGINDSP 880 (998)
Q Consensus 807 ~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~--~~~~~--~p~~K--~~~v~~l~~~g~~v~~vGDg~nD~~ 880 (998)
|+++++|+.|+++|++++|+|||+..++..+++++||.+ ++++. +|++| .++++.|+.+++.|+|||||.||++
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~nD~~ 209 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDGVNDAP 209 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESSGGHHH
T ss_pred hhhhhhhhhhhccCcceeeeeccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEccCHHHHH
Confidence 999999999999999999999999999999999999987 99999 99999 9999999977779999999999999
Q ss_pred HHhcCC
Q 001896 881 ALAAAD 886 (998)
Q Consensus 881 al~~A~ 886 (998)
|+++||
T Consensus 210 al~~Ag 215 (215)
T PF00702_consen 210 ALKAAG 215 (215)
T ss_dssp HHHHSS
T ss_pred HHHhCc
Confidence 999997
No 36
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.62 E-value=5.7e-15 Score=131.45 Aligned_cols=124 Identities=26% Similarity=0.349 Sum_probs=110.4
Q ss_pred ECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc--eEEEecCcccHHHHHHHHhhcCCE
Q 001896 791 YDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--DVMADVMPAGKADAVRSFQKDGSI 868 (998)
Q Consensus 791 ~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~--~~~~~~~p~~K~~~v~~l~~~g~~ 868 (998)
+-+++.+.++---.+-++++++|++|+++ +++++.|||...+..+.|+-+|++ ++|+...|+.|.++++.|+++++.
T Consensus 17 ~~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k 95 (152)
T COG4087 17 KAGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEK 95 (152)
T ss_pred ecceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcE
Confidence 45678888888999999999999999999 999999999999999999999987 689999999999999999999999
Q ss_pred EEEEcCCCCCHHHHhcCCeEEEe-c--CchHHHHHhcCEEEecCChhHHHHH
Q 001896 869 VAMVGDGINDSPALAAADVGMAI-G--AGTDIAIEAADYVLMRNSLEDVIIA 917 (998)
Q Consensus 869 v~~vGDg~nD~~al~~A~vgia~-~--~~~~~~~~~ad~vl~~~~~~~l~~~ 917 (998)
|.|||||.||.+||++||+||.. + +..+.+.++||+++ .+...+.++
T Consensus 96 ~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvi--k~i~e~ldl 145 (152)
T COG4087 96 VVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVL--KEIAEILDL 145 (152)
T ss_pred EEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhh--hhHHHHHHH
Confidence 99999999999999999999876 3 45677889999998 445544443
No 37
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.53 E-value=5e-14 Score=163.78 Aligned_cols=146 Identities=41% Similarity=0.667 Sum_probs=134.1
Q ss_pred eEEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchhccccCCCCCCCC
Q 001896 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQ 125 (998)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~ 125 (998)
.+-.+++.||+|++|++++|+.+++.+|+.++.+.+..+++.+.||+...+.+.+.+.+++.||.++..+......
T Consensus 69 ~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~~---- 144 (951)
T KOG0207|consen 69 SKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGNS---- 144 (951)
T ss_pred ceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCCC----
Confidence 3567999999999999999999999999999999999999999999999999999999999999998766543221
Q ss_pred cceeeeeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001896 126 GTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (998)
Q Consensus 126 ~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~ 196 (998)
+ .+..|.|.||+|.+|..+||+.+.+++||++++++..++++.|.|||+.++++++.+.+++.||++...
T Consensus 145 ~-~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~ 214 (951)
T KOG0207|consen 145 N-QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVR 214 (951)
T ss_pred C-CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceee
Confidence 1 467899999999999999999999999999999999999999999999999999999999999997653
No 38
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.45 E-value=1.2e-10 Score=146.01 Aligned_cols=128 Identities=24% Similarity=0.381 Sum_probs=105.4
Q ss_pred eeeeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccC---------
Q 001896 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSS--------- 199 (998)
Q Consensus 129 ~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~~~~--------- 199 (998)
+.++.|+||+|++|+.+|++++++++||.++.+++. +.++..+ .+.+.+.+.++++||++.....+
T Consensus 4 ~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~ 78 (834)
T PRK10671 4 TIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASAEALIETIKQAGYDASVSHPKAKPLTESSI 78 (834)
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCHHHHHHHHHhcCCccccccccccccccccc
Confidence 468999999999999999999999999999999994 4555532 47899999999999999863210
Q ss_pred ------------------CccceeeeecCccchhhhhHHHhhhhcCCCceeEEeecCCCeEEEEecCCCCCccccccccc
Q 001896 200 ------------------GQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIA 261 (998)
Q Consensus 200 ------------------~~~~~~~~v~gm~c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~y~~~~~~~~~i~~~i~ 261 (998)
...+.++.+.||+|..|+..+++.+.+.+||.++++|+.+++..+.+. .+.+++.+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~---~s~~~I~~~I~ 155 (834)
T PRK10671 79 PSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGS---ASPQDLVQAVE 155 (834)
T ss_pred CchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEcc---CCHHHHHHHHH
Confidence 012456889999999999999999999999999999999999888642 45566666677
Q ss_pred ccC
Q 001896 262 GRS 264 (998)
Q Consensus 262 ~~g 264 (998)
..|
T Consensus 156 ~~G 158 (834)
T PRK10671 156 KAG 158 (834)
T ss_pred hcC
Confidence 766
No 39
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.18 E-value=9e-11 Score=98.27 Aligned_cols=69 Identities=43% Similarity=0.641 Sum_probs=64.7
Q ss_pred ceEEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchh
Q 001896 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (998)
Q Consensus 45 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (998)
|++..+.|+||+|.+|+.+|+++|++++||.++++++..+.+.+.+++...+.+++.++++++||.+..
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeee
Confidence 567789999999999999999999999999999999999999999998788999999999999998753
No 40
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.18 E-value=1e-10 Score=95.94 Aligned_cols=62 Identities=44% Similarity=0.670 Sum_probs=59.3
Q ss_pred EEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCcc
Q 001896 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFE 110 (998)
Q Consensus 49 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 110 (998)
+|.|+||+|++|+++|+++|++++||.++++|+.++++.+.+++...+++++.++++++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 48899999999999999999999999999999999999999998878889999999999995
No 41
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.17 E-value=7.9e-11 Score=96.61 Aligned_cols=62 Identities=45% Similarity=0.737 Sum_probs=59.7
Q ss_pred eeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCc
Q 001896 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFE 192 (998)
Q Consensus 131 ~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~ 192 (998)
+|+|+||+|++|+.+|+++|.+++||.++.+|+.++++.|.|++...++++|.+.|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 47899999999999999999999999999999999999999999988999999999999995
No 42
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.16 E-value=1.3e-10 Score=107.97 Aligned_cols=115 Identities=23% Similarity=0.370 Sum_probs=98.2
Q ss_pred HHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhc----CCEEEEEcCCCCCHHHHhcCCe
Q 001896 812 VVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKD----GSIVAMVGDGINDSPALAAADV 887 (998)
Q Consensus 812 ~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~v 887 (998)
.|+.|.+.|+++.++||++...+..-++.+||..+|... ++|....+.|.++ .+.|+++||..||.|+|+..++
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~--~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGl 120 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGI--SDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGL 120 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeech--HhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCC
Confidence 467788999999999999999999999999999999875 6888888877664 4579999999999999999999
Q ss_pred EEEecCchHHHHHhcCEEEecCC----hhHHHHHHHHHHHHHHHH
Q 001896 888 GMAIGAGTDIAIEAADYVLMRNS----LEDVIIAIDLSRKTFARI 928 (998)
Q Consensus 888 gia~~~~~~~~~~~ad~vl~~~~----~~~l~~~i~~~r~~~~~i 928 (998)
++++.++....++.||+|+..+. ...+.++|..++..+...
T Consensus 121 s~a~~dAh~~v~~~a~~Vt~~~GG~GAvREv~dlil~aq~~~d~~ 165 (170)
T COG1778 121 SVAVADAHPLLKQRADYVTSKKGGEGAVREVCDLILQAQGKLDEA 165 (170)
T ss_pred cccccccCHHHHHhhHhhhhccCcchHHHHHHHHHHHccCcHHHH
Confidence 99999999999999999997543 666777777776655443
No 43
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.09 E-value=5.7e-10 Score=122.67 Aligned_cols=115 Identities=22% Similarity=0.301 Sum_probs=101.2
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEe-----------------cCcccHHHHHHHHhhc-
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----------------VMPAGKADAVRSFQKD- 865 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~- 865 (998)
++.|++.+.++.|++.|+++.++||.....+..+.+++|++.++++ +..+.|.+.++.+.++
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~l 260 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEY 260 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHc
Confidence 5889999999999999999999999998889999999999876542 1345799888887654
Q ss_pred ---CCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHH
Q 001896 866 ---GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 866 ---g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
.+.+.++|||.||.+|++.|++||+| ++.+..++.||.++..+++.++..++.
T Consensus 261 gi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nAkp~Vk~~Ad~~i~~~~l~~~l~~~~ 316 (322)
T PRK11133 261 EIPLAQTVAIGDGANDLPMIKAAGLGIAY-HAKPKVNEQAQVTIRHADLMGVLCILS 316 (322)
T ss_pred CCChhhEEEEECCHHHHHHHHHCCCeEEe-CCCHHHHhhCCEEecCcCHHHHHHHhc
Confidence 36799999999999999999999999 888999999999999889999988764
No 44
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.09 E-value=4.5e-10 Score=115.66 Aligned_cols=116 Identities=19% Similarity=0.201 Sum_probs=99.2
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEE--------e-------cCcccHHHHHHHHhhcCCE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA--------D-------VMPAGKADAVRSFQKDGSI 868 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~--------~-------~~p~~K~~~v~~l~~~g~~ 868 (998)
+++|++.+.|+.+|+.| +++++||.....+..+++++|++.+++ + ..++.|..+++.+++.|..
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~~ 146 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYR 146 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCCC
Confidence 68999999999999975 999999999999999999999987665 1 2456899999999888888
Q ss_pred EEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHHHH
Q 001896 869 VAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLS 921 (998)
Q Consensus 869 v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~ 921 (998)
+.|+|||.||.+|++.||++|++.. .+..++.||=.-.-.+.+.+...+.++
T Consensus 147 ~v~vGDs~nDl~ml~~Ag~~ia~~a-k~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T TIGR02137 147 VIAAGDSYNDTTMLSEAHAGILFHA-PENVIREFPQFPAVHTYEDLKREFLKA 198 (203)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEecC-CHHHHHhCCCCCcccCHHHHHHHHHHH
Confidence 9999999999999999999999964 455566666555567788888888876
No 45
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.04 E-value=1.4e-09 Score=107.11 Aligned_cols=97 Identities=22% Similarity=0.332 Sum_probs=85.2
Q ss_pred HHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhh----cCCEEEEEcCCCCCHHHHhcCCe
Q 001896 812 VVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQK----DGSIVAMVGDGINDSPALAAADV 887 (998)
Q Consensus 812 ~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~v 887 (998)
+|+.|+++|+++.++||++...+..+.+++|+..++... ..|.+.++.+.+ ..+.++|+||+.||.+|++.|++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~~--~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~ 113 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQGQ--SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGL 113 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEecc--cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCC
Confidence 899999999999999999999999999999999888764 456776666543 24579999999999999999999
Q ss_pred EEEecCchHHHHHhcCEEEecCC
Q 001896 888 GMAIGAGTDIAIEAADYVLMRNS 910 (998)
Q Consensus 888 gia~~~~~~~~~~~ad~vl~~~~ 910 (998)
++++.++.+..+..+|+++.++.
T Consensus 114 ~~~v~~~~~~~~~~a~~i~~~~~ 136 (154)
T TIGR01670 114 SVAVADAHPLLIPRADYVTRIAG 136 (154)
T ss_pred eEecCCcCHHHHHhCCEEecCCC
Confidence 99999888889999999997665
No 46
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.04 E-value=6.8e-10 Score=92.97 Aligned_cols=67 Identities=33% Similarity=0.554 Sum_probs=63.5
Q ss_pred eeeeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 001896 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (998)
Q Consensus 129 ~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~ 195 (998)
...++++||+|.+|+.+++++|++++||.++++++..++..|.||+...+.++|.+++++.||++..
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeee
Confidence 4578999999999999999999999999999999999999999999889999999999999998753
No 47
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.01 E-value=2.5e-09 Score=116.60 Aligned_cols=132 Identities=23% Similarity=0.343 Sum_probs=101.9
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc--------------------
Q 001896 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-------------------- 844 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~-------------------- 844 (998)
+.+++-.||+++.- ...+.+..+++|++|+++|++++++||++...+..+.+++|++
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~~~~~~ 80 (270)
T PRK10513 4 KLIAIDMDGTLLLP---DHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQPGDYCITNNGALVQKAADG 80 (270)
T ss_pred EEEEEecCCcCcCC---CCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCCCCCeEEEcCCeEEEECCCC
Confidence 56677788988853 4568899999999999999999999999999999999999862
Q ss_pred ---------------------------------eEEEe----------------c----------C-------------c
Q 001896 845 ---------------------------------DVMAD----------------V----------M-------------P 852 (998)
Q Consensus 845 ---------------------------------~~~~~----------------~----------~-------------p 852 (998)
.++.. . . +
T Consensus 81 ~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (270)
T PRK10513 81 ETVAQTALSYDDYLYLEKLSREVGVHFHALDRNTLYTANRDISYYTVHESFLTGIPLVFREVEKMDPNLQFPKVMMIDEP 160 (270)
T ss_pred CEEEecCCCHHHHHHHHHHHHHcCCcEEEEECCEEEEecCCcchhHHHhhhhccCCccccchhhccccCCceEEEEeCCH
Confidence 00100 0 0 0
Q ss_pred c----------------------------------cHHHHHHHHhhc----CCEEEEEcCCCCCHHHHhcCCeEEEecCc
Q 001896 853 A----------------------------------GKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAG 894 (998)
Q Consensus 853 ~----------------------------------~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~ 894 (998)
+ .|...++.+.+. .+.|+++||+.||.+||+.|++|+||+|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA 240 (270)
T PRK10513 161 EILDAAIARIPAEVKERYTVLKSAPYFLEILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNA 240 (270)
T ss_pred HHHHHHHHHhHHHhcCcEEEEEecCeeEEEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCc
Confidence 0 011111111110 24599999999999999999999999999
Q ss_pred hHHHHHhcCEEEecCChhHHHHHHH
Q 001896 895 TDIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 895 ~~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
.+.+|+.||+|+.+++-+++.++|+
T Consensus 241 ~~~vK~~A~~vt~~n~~dGva~~i~ 265 (270)
T PRK10513 241 IPSVKEVAQFVTKSNLEDGVAFAIE 265 (270)
T ss_pred cHHHHHhcCeeccCCCcchHHHHHH
Confidence 9999999999999999999988886
No 48
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.00 E-value=3.1e-09 Score=112.91 Aligned_cols=132 Identities=24% Similarity=0.325 Sum_probs=104.1
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce-------------------
Q 001896 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 845 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~------------------- 845 (998)
+.+++-.||+++-- ...+.+.+.++|++|++.|++++++||++...+..+.+.+|++.
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~ 80 (230)
T PRK01158 4 KAIAIDIDGTITDK---DRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKRI 80 (230)
T ss_pred eEEEEecCCCcCCC---CCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEEEcCCCCEE
Confidence 46777788888741 22478999999999999999999999999999999999999851
Q ss_pred ------------------------EE------------------------------------------EecCcc--cHHH
Q 001896 846 ------------------------VM------------------------------------------ADVMPA--GKAD 857 (998)
Q Consensus 846 ------------------------~~------------------------------------------~~~~p~--~K~~ 857 (998)
.+ .++.|. .|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg~ 160 (230)
T PRK01158 81 FLGDIEECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKGT 160 (230)
T ss_pred EEcchHHHHHHHHHHHHhccccceeeecCCcccccceeeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChHH
Confidence 00 011111 1334
Q ss_pred HHHHHhhc----CCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHH
Q 001896 858 AVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 858 ~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
.++.+.+. .+.++++||+.||.+|++.|++|++|+++.+.+|+.||++..+++-.++.++++
T Consensus 161 al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~vk~~a~~v~~~n~~~Gv~~~l~ 226 (230)
T PRK01158 161 GLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANADEELKEAADYVTEKSYGEGVAEAIE 226 (230)
T ss_pred HHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCccHHHHHhcceEecCCCcChHHHHHH
Confidence 44443322 246999999999999999999999999999999999999999889889988875
No 49
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.96 E-value=4.1e-09 Score=114.52 Aligned_cols=133 Identities=26% Similarity=0.397 Sum_probs=106.1
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce-------------------
Q 001896 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 845 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~------------------- 845 (998)
+.+++-.||+++.- ..++.+.++++|+++++.|++++++||++...+..+.+++|++.
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~ 80 (264)
T COG0561 4 KLLAFDLDGTLLDS---NKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNGGELLFQ 80 (264)
T ss_pred eEEEEcCCCCccCC---CCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecCCcEEee
Confidence 45667777777653 33399999999999999999999999999999999999999960
Q ss_pred ------------------------EEE-----------------------------------------------------
Q 001896 846 ------------------------VMA----------------------------------------------------- 848 (998)
Q Consensus 846 ------------------------~~~----------------------------------------------------- 848 (998)
++.
T Consensus 81 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (264)
T COG0561 81 KPLSREDVEELLELLEDFQGIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELVE 160 (264)
T ss_pred ecCCHHHHHHHHHHHHhccCceEEEEeccceeeccCCCcccccccccccccccccchhhcCcceEEEEecChHhHHHHHH
Confidence 000
Q ss_pred ---------------------ecCcc--cHHHHHHHHhhc-C---CEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHh
Q 001896 849 ---------------------DVMPA--GKADAVRSFQKD-G---SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEA 901 (998)
Q Consensus 849 ---------------------~~~p~--~K~~~v~~l~~~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ 901 (998)
++.|. .|...++.+.+. | +.|+++||+.||.+||+.|+.|||||++.+.+++.
T Consensus 161 ~l~~~~~~~~~~~~~s~~~~lei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~k~~ 240 (264)
T COG0561 161 ALRKRFPDLGLTVSSSGPISLDITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNADEELKEL 240 (264)
T ss_pred HHhhhccccceEEEEcCCceEEEecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCCCHHHHhh
Confidence 01111 244444444432 2 35999999999999999999999999999999999
Q ss_pred cCEEEecCChhHHHHHHHH
Q 001896 902 ADYVLMRNSLEDVIIAIDL 920 (998)
Q Consensus 902 ad~vl~~~~~~~l~~~i~~ 920 (998)
||++...++-+++.+.++.
T Consensus 241 A~~vt~~n~~~Gv~~~l~~ 259 (264)
T COG0561 241 ADYVTTSNDEDGVAEALEK 259 (264)
T ss_pred CCcccCCccchHHHHHHHH
Confidence 9988899999999998874
No 50
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.96 E-value=3.2e-09 Score=111.49 Aligned_cols=130 Identities=24% Similarity=0.249 Sum_probs=104.0
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce-------------------
Q 001896 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 845 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~------------------- 845 (998)
+.+++-.||+++. =...+.+.+.++|++|++.|++++++||++...+..+++.++++.
T Consensus 2 k~v~~DlDGTLl~---~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~~~~ 78 (215)
T TIGR01487 2 KLVAIDIDGTLTE---PNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKEDIFL 78 (215)
T ss_pred cEEEEecCCCcCC---CCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCCcEEE
Confidence 3566677888884 233588999999999999999999999999999999999999860
Q ss_pred ----------------------------------------------------------EEEecCc--ccHHHHHHHHhhc
Q 001896 846 ----------------------------------------------------------VMADVMP--AGKADAVRSFQKD 865 (998)
Q Consensus 846 ----------------------------------------------------------~~~~~~p--~~K~~~v~~l~~~ 865 (998)
.+.++.| ..|...++.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~ 158 (215)
T TIGR01487 79 ANMEEEWFLDEEKKKRFPRDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKEL 158 (215)
T ss_pred ecccchhhHHHhhhhhhhhhhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHH
Confidence 0111122 2466666655442
Q ss_pred ----CCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHH
Q 001896 866 ----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIA 917 (998)
Q Consensus 866 ----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~ 917 (998)
.+.++++||+.||.+|++.|+.|++|+++.+.+++.||++..+++-.++.++
T Consensus 159 ~~i~~~~~i~iGDs~ND~~ml~~ag~~vam~na~~~~k~~A~~v~~~~~~~Gv~~~ 214 (215)
T TIGR01487 159 LGIKPEEVAAIGDSENDIDLFRVVGFKVAVANADDQLKEIADYVTSNPYGEGVVEV 214 (215)
T ss_pred hCCCHHHEEEECCCHHHHHHHHhCCCeEEcCCccHHHHHhCCEEcCCCCCchhhhh
Confidence 2359999999999999999999999999999999999999988887777765
No 51
>PRK10976 putative hydrolase; Provisional
Probab=98.95 E-value=5.4e-09 Score=113.69 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=100.8
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce-------------------
Q 001896 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 845 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~------------------- 845 (998)
+.+++-.||+++.- ...+.+...++|++++++|++++++||++...+..+.+.+|++.
T Consensus 3 kli~~DlDGTLl~~---~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~~i~ 79 (266)
T PRK10976 3 QVVASDLDGTLLSP---DHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKSYMITSNGARVHDTDGNLIF 79 (266)
T ss_pred eEEEEeCCCCCcCC---CCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCeEEEcCCcEEECCCCCEeh
Confidence 45677778888842 34588999999999999999999999999999999999999850
Q ss_pred -------------------------------EEE-ec-----------------------------------Cccc----
Q 001896 846 -------------------------------VMA-DV-----------------------------------MPAG---- 854 (998)
Q Consensus 846 -------------------------------~~~-~~-----------------------------------~p~~---- 854 (998)
++. +. .+.+
T Consensus 80 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~~ 159 (266)
T PRK10976 80 SHNLDRDIASDLFGVVHDNPDIITNVYRDDEWFMNRHRPEEMRFFKEAVFKYQLYEPGLLEPDGVSKVFFTCDSHEKLLP 159 (266)
T ss_pred hhcCCHHHHHHHHHhhcccCCEEEEEEcCCeEEEcCCChHHHHHHHhcCCcceeechhhcccCCceEEEEEcCCHHHHHH
Confidence 000 00 0000
Q ss_pred -------------------------------HHHHHHHHhhc----CCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHH
Q 001896 855 -------------------------------KADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAI 899 (998)
Q Consensus 855 -------------------------------K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~ 899 (998)
|...++.+.+. .+.|+++||+.||.+||+.|+.|+||+|+.+.+|
T Consensus 160 ~~~~l~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~vK 239 (266)
T PRK10976 160 LEQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLK 239 (266)
T ss_pred HHHHHHHHhCCcEEEEEeCCceEEEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHHH
Confidence 11111111111 2459999999999999999999999999999999
Q ss_pred HhcC--EEEecCChhHHHHHHH
Q 001896 900 EAAD--YVLMRNSLEDVIIAID 919 (998)
Q Consensus 900 ~~ad--~vl~~~~~~~l~~~i~ 919 (998)
+.|| .|+.+++-+++.++|+
T Consensus 240 ~~A~~~~v~~~n~edGVa~~l~ 261 (266)
T PRK10976 240 DLLPELEVIGSNADDAVPHYLR 261 (266)
T ss_pred HhCCCCeecccCchHHHHHHHH
Confidence 9988 7778888889988875
No 52
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.95 E-value=2.8e-09 Score=105.77 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=84.9
Q ss_pred HHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhh----cCCEEEEEcCCCCCHHHHhcCC
Q 001896 811 VVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQK----DGSIVAMVGDGINDSPALAAAD 886 (998)
Q Consensus 811 ~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~ 886 (998)
..|+.|++.|+++.++|+.+...+..+.+.+|+..+|....| |.+.++.+.+ ..+.++|+||+.||.+|++.|+
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~kp--kp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag 118 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEGIKK--KTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVG 118 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEecCCC--CHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCC
Confidence 578999999999999999999999999999999988887643 4444444433 3457999999999999999999
Q ss_pred eEEEecCchHHHHHhcCEEEecCChh
Q 001896 887 VGMAIGAGTDIAIEAADYVLMRNSLE 912 (998)
Q Consensus 887 vgia~~~~~~~~~~~ad~vl~~~~~~ 912 (998)
++++|+++.+..++.|++++..++=.
T Consensus 119 ~~~am~nA~~~lk~~A~~I~~~~~~~ 144 (169)
T TIGR02726 119 LAVAVGDAVADVKEAAAYVTTARGGH 144 (169)
T ss_pred CeEECcCchHHHHHhCCEEcCCCCCC
Confidence 99999999999999999998655433
No 53
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.94 E-value=4.3e-09 Score=114.81 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=101.1
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce-------------------
Q 001896 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 845 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~------------------- 845 (998)
+.+++-.||+++.- ...+.+..+++|++|+++|++++++||++...+..+.+++|++.
T Consensus 3 kli~~DlDGTLl~~---~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~~~~~~~l~ 79 (272)
T PRK15126 3 RLAAFDMDGTLLMP---DHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVHSLEGELLH 79 (272)
T ss_pred cEEEEeCCCcCcCC---CCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEEcCCCCEEE
Confidence 45667778888852 44689999999999999999999999999999999999999850
Q ss_pred ------------------------------EEE-----------------------------------------------
Q 001896 846 ------------------------------VMA----------------------------------------------- 848 (998)
Q Consensus 846 ------------------------------~~~----------------------------------------------- 848 (998)
.+.
T Consensus 80 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~ 159 (272)
T PRK15126 80 RQDLPADVAELVLHQQWDTRASMHVFNDDGWFTGKEIPALLQAHVYSGFRYQLIDLKRLPAHGVTKICFCGDHDDLTRLQ 159 (272)
T ss_pred eecCCHHHHHHHHHHhhhcCcEEEEEcCCeEEecCCcHHHHHHHHhcCCceEEecHHHccccCceEEEEECCHHHHHHHH
Confidence 000
Q ss_pred ---------------------ecCcc--cHHHHHHHHhhc----CCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHh
Q 001896 849 ---------------------DVMPA--GKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEA 901 (998)
Q Consensus 849 ---------------------~~~p~--~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ 901 (998)
++.|. .|...++.+.+. .+.|+++||+.||.+||+.|+.||||||+.+.+|+.
T Consensus 160 ~~l~~~~~~~~~~~~s~~~~~eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~ 239 (272)
T PRK15126 160 IQLNEALGERAHLCFSATDCLEVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAE 239 (272)
T ss_pred HHHHHHhcCCEEEEEcCCcEEEeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHh
Confidence 00000 122222222111 246999999999999999999999999999999999
Q ss_pred cCE--EEecCChhHHHHHHH
Q 001896 902 ADY--VLMRNSLEDVIIAID 919 (998)
Q Consensus 902 ad~--vl~~~~~~~l~~~i~ 919 (998)
||. ++.+++-+++.++|+
T Consensus 240 A~~~~v~~~n~edGva~~l~ 259 (272)
T PRK15126 240 LPHLPVIGHCRNQAVSHYLT 259 (272)
T ss_pred CCCCeecCCCcchHHHHHHH
Confidence 986 666888888888875
No 54
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.91 E-value=8.9e-09 Score=104.69 Aligned_cols=139 Identities=17% Similarity=0.253 Sum_probs=104.4
Q ss_pred cCCeEEEEEECCeEEEE-EEe-c--CCCcHhH---HHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCccc
Q 001896 782 SARTGILVAYDDNLIGV-MGI-A--DPVKREA---AVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAG 854 (998)
Q Consensus 782 ~g~~~i~va~~~~~lG~-i~l-~--d~~r~~~---~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~ 854 (998)
.+.+.+.+..|++++.- +.. . ..+++-. ...++.|+++|+++.++||++...+..+++++|+..+|.. .++
T Consensus 19 ~~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g--~~~ 96 (183)
T PRK09484 19 ENIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQG--QSN 96 (183)
T ss_pred hCceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeecC--CCc
Confidence 35777888888887732 111 1 1112222 2689999999999999999999999999999999988874 456
Q ss_pred HHHHHHHHhhc----CCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecC----ChhHHHHHHHHHH
Q 001896 855 KADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRN----SLEDVIIAIDLSR 922 (998)
Q Consensus 855 K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~----~~~~l~~~i~~~r 922 (998)
|...++.+.++ .+.++||||+.||.++++.|+++++++++.+..+..+|+++..+ .+..+.+.+...|
T Consensus 97 k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~v~~~~~~~~~~a~~v~~~~~g~g~~~el~~~i~~~~ 172 (183)
T PRK09484 97 KLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVAVADAHPLLLPRADYVTRIAGGRGAVREVCDLLLLAQ 172 (183)
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEecCChhHHHHHhCCEEecCCCCCCHHHHHHHHHHHhc
Confidence 77766655332 35799999999999999999999999888888888999998532 3455565555444
No 55
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.89 E-value=6.3e-09 Score=109.64 Aligned_cols=113 Identities=23% Similarity=0.340 Sum_probs=96.1
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEe-----------------cCcccHHHHHHHHhhcC
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----------------VMPAGKADAVRSFQKDG 866 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~g 866 (998)
+++|++.+.++.|++.|++++++||.....+..+.+.+|+..+++. ..+..|..+++.+.++.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 164 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKE 164 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHc
Confidence 5899999999999999999999999999999999999999877752 11334788777665442
Q ss_pred ----CEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHH
Q 001896 867 ----SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIA 917 (998)
Q Consensus 867 ----~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~ 917 (998)
+.+.||||+.+|.++++.|+++++++ +.+..++.||.++.++++..+..+
T Consensus 165 ~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~-~~~~~~~~a~~~i~~~~~~~~~~~ 218 (219)
T TIGR00338 165 GISPENTVAVGDGANDLSMIKAAGLGIAFN-AKPKLQQKADICINKKDLTDILPL 218 (219)
T ss_pred CCCHHHEEEEECCHHHHHHHHhCCCeEEeC-CCHHHHHhchhccCCCCHHHHHhh
Confidence 46999999999999999999999995 567888999999999998887654
No 56
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.84 E-value=1.6e-08 Score=107.00 Aligned_cols=128 Identities=23% Similarity=0.303 Sum_probs=99.4
Q ss_pred EEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce-----------------------
Q 001896 789 VAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----------------------- 845 (998)
Q Consensus 789 va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~----------------------- 845 (998)
+-.||+++.- ...+.+.+.++|++|++.|++++++||++...+..+.+.+|+..
T Consensus 3 ~DlDGTLl~~---~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~~~~~ 79 (225)
T TIGR01482 3 SDIDGTLTDP---NRAINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENGGEISYNEGMDDIFLAY 79 (225)
T ss_pred EeccCccCCC---CcccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecCcEEEeCCCCceEEecc
Confidence 3446666531 23578899999999999999999999999999999999999640
Q ss_pred ----------------------------------------------------E-------EEecCc--ccHHHHHHHHhh
Q 001896 846 ----------------------------------------------------V-------MADVMP--AGKADAVRSFQK 864 (998)
Q Consensus 846 ----------------------------------------------------~-------~~~~~p--~~K~~~v~~l~~ 864 (998)
+ +.++.| ..|...++.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~ 159 (225)
T TIGR01482 80 LEEEWFLDIVIAKTFPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKE 159 (225)
T ss_pred cCHHHHHHHHHhcccchhhhccccccccceEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHH
Confidence 0 011112 246666665544
Q ss_pred c----CCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhH----HHHHHH
Q 001896 865 D----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLED----VIIAID 919 (998)
Q Consensus 865 ~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~----l~~~i~ 919 (998)
. .+.++++||+.||.+|++.|++|++|+|+.+.+++.||.|..+++-.+ +.+.++
T Consensus 160 ~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~~k~~A~~vt~~~~~~G~~~~v~~~l~ 222 (225)
T TIGR01482 160 KLGIKPGETLVCGDSENDIDLFEVPGFGVAVANAQPELKEWADYVTESPYGEGGAEAIGEILQ 222 (225)
T ss_pred HhCCCHHHEEEECCCHhhHHHHHhcCceEEcCChhHHHHHhcCeecCCCCCCcHHHHHHHHHH
Confidence 2 356999999999999999999999999999999999999998888888 666554
No 57
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.82 E-value=4.3e-08 Score=107.05 Aligned_cols=132 Identities=20% Similarity=0.285 Sum_probs=100.9
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce-------------------
Q 001896 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 845 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~------------------- 845 (998)
+.+++-.||+++.- ...+.+...++|++++++|++++++||++...+..+.+++|++.
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~d~~~~~~l 80 (272)
T PRK10530 4 RVIALDLDGTLLTP---KKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYQAKKVL 80 (272)
T ss_pred cEEEEeCCCceECC---CCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCCEEEcCCcEEEecCCCEEE
Confidence 56777789998842 34588999999999999999999999999999999999998750
Q ss_pred -------------------------------EEEecC-------------------------------------------
Q 001896 846 -------------------------------VMADVM------------------------------------------- 851 (998)
Q Consensus 846 -------------------------------~~~~~~------------------------------------------- 851 (998)
++..-.
T Consensus 81 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (272)
T PRK10530 81 EADPLPVQQALQVIEMLDEHQIHGLMYVDDAMLYEHPTGHVIRTLNWAQTLPPEQRPTFTQVDSLAQAARQVNAIWKFAL 160 (272)
T ss_pred EecCCCHHHHHHHHHHHHhCCcEEEEEcCCceEecCchHHHHHHhhhhhccchhcccceEEcccHHHHHhhcCCcEEEEE
Confidence 000000
Q ss_pred --cc-c---------------------------------HHHHHHHHhh-c---CCEEEEEcCCCCCHHHHhcCCeEEEe
Q 001896 852 --PA-G---------------------------------KADAVRSFQK-D---GSIVAMVGDGINDSPALAAADVGMAI 891 (998)
Q Consensus 852 --p~-~---------------------------------K~~~v~~l~~-~---g~~v~~vGDg~nD~~al~~A~vgia~ 891 (998)
++ + |...++.+.+ . .+.++++||+.||.+|++.|++|++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~~vam 240 (272)
T PRK10530 161 THEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGLGVAM 240 (272)
T ss_pred ecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCceEEe
Confidence 00 0 0011111110 0 14589999999999999999999999
Q ss_pred cCchHHHHHhcCEEEecCChhHHHHHHH
Q 001896 892 GAGTDIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 892 ~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
|++.+..++.||+++.+++-+++.++|+
T Consensus 241 gna~~~lk~~Ad~v~~~n~~dGv~~~l~ 268 (272)
T PRK10530 241 GNADDAVKARADLVIGDNTTPSIAEFIY 268 (272)
T ss_pred cCchHHHHHhCCEEEecCCCCcHHHHHH
Confidence 9999999999999999999999988885
No 58
>PLN02887 hydrolase family protein
Probab=98.78 E-value=3.6e-08 Score=116.14 Aligned_cols=52 Identities=31% Similarity=0.404 Sum_probs=49.6
Q ss_pred EEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHH
Q 001896 868 IVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 868 ~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
.|+++|||.||.+||+.|++||||||+.+.+|+.||+|..+++-++|.++|+
T Consensus 525 eviAFGDs~NDIeMLe~AG~gVAMgNA~eeVK~~Ad~VT~sNdEDGVA~aLe 576 (580)
T PLN02887 525 EIMAIGDGENDIEMLQLASLGVALSNGAEKTKAVADVIGVSNDEDGVADAIY 576 (580)
T ss_pred HEEEEecchhhHHHHHHCCCEEEeCCCCHHHHHhCCEEeCCCCcCHHHHHHH
Confidence 5999999999999999999999999999999999999999999999998886
No 59
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.77 E-value=2.6e-08 Score=103.06 Aligned_cols=103 Identities=27% Similarity=0.344 Sum_probs=83.6
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEe-----------------cCcccHHHHHHHHhhc
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----------------VMPAGKADAVRSFQKD 865 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~ 865 (998)
.+++|++.+.++.+|++|.+++++||-...-+..+++.+|++.+++. +..+.|...++.+.+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999843322 2346788888666553
Q ss_pred -CC---EEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEE
Q 001896 866 -GS---IVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVL 906 (998)
Q Consensus 866 -g~---~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl 906 (998)
|. .+.++|||.||.|||+.|+.+++++.. ...+..|+...
T Consensus 156 ~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~-~~l~~~a~~~~ 199 (212)
T COG0560 156 LGIPLEETVAYGDSANDLPMLEAAGLPIAVNPK-PKLRALADVRI 199 (212)
T ss_pred cCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcC-HHHHHHHHHhc
Confidence 43 599999999999999999999999744 33444555443
No 60
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.77 E-value=2.7e-08 Score=107.17 Aligned_cols=117 Identities=26% Similarity=0.396 Sum_probs=97.2
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce------------------------------------
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------------------------ 845 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~------------------------------------ 845 (998)
...+.+...++|++|+++|+++++.||++...+..+.+++++..
T Consensus 13 ~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~~~~i~~~~~~~i~~~~~ 92 (254)
T PF08282_consen 13 DGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILYEKPIDSDDVKKILKYLK 92 (254)
T ss_dssp TSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEEEESB-HHHHHHHHHHHH
T ss_pred CCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccchhhhcccccceeeecccccchhhheeccchhheeehhh
Confidence 45678999999999999999999999999999999999999850
Q ss_pred --------------------------------------------------------------------------------
Q 001896 846 -------------------------------------------------------------------------------- 845 (998)
Q Consensus 846 -------------------------------------------------------------------------------- 845 (998)
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 172 (254)
T PF08282_consen 93 EHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSEDDLEDEEIFKILFFPDPEDLEQLREELKKKFPNLIDVVR 172 (254)
T ss_dssp HTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHHHHHCSSESEEEEESCHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred hcccccccccceeeecccccccchhhhhhcccccccccccccccccccceeeeccccchhhhhhhhhhccccCcceeEEE
Confidence
Q ss_pred ---EEEecCc--ccHHHHHHHHhhc----CCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHH
Q 001896 846 ---VMADVMP--AGKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVII 916 (998)
Q Consensus 846 ---~~~~~~p--~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~ 916 (998)
.+-+++| ..|...++.+.+. .+.++++||+.||.+||+.|+.|++|+++++..++.||.++...+-.++.+
T Consensus 173 ~~~~~lei~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~~k~~a~~i~~~~~~~gv~~ 252 (254)
T PF08282_consen 173 SSPYFLEITPKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNATPELKKAADYITPSNNDDGVAK 252 (254)
T ss_dssp EETTEEEEEETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEESSGTCTHHHH
T ss_pred ecccceEEeeCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCCCHHHHHhCCEEecCCCCChHHH
Confidence 1112333 3577777776542 357999999999999999999999999999999999999998776688877
Q ss_pred HH
Q 001896 917 AI 918 (998)
Q Consensus 917 ~i 918 (998)
+|
T Consensus 253 ~i 254 (254)
T PF08282_consen 253 AI 254 (254)
T ss_dssp HH
T ss_pred hC
Confidence 64
No 61
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.72 E-value=5.4e-08 Score=101.42 Aligned_cols=113 Identities=22% Similarity=0.380 Sum_probs=92.1
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEe---------------cCcccHHHHHHHHhhcCCE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD---------------VMPAGKADAVRSFQKDGSI 868 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~---------------~~p~~K~~~v~~l~~~g~~ 868 (998)
++.|++.++++.|+++ ++++++|+.....+..+.+++|++.+|+. ..|+.|...++.++..+..
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~~ 146 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGYR 146 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCCe
Confidence 4689999999999999 99999999999999999999998765432 1467888899998888899
Q ss_pred EEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCE-EEecCChhHHHHHHH
Q 001896 869 VAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADY-VLMRNSLEDVIIAID 919 (998)
Q Consensus 869 v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~-vl~~~~~~~l~~~i~ 919 (998)
++||||+.||.+|.++|++|+.++.........++. ++ +++..+...+.
T Consensus 147 ~v~iGDs~~D~~~~~aa~~~v~~~~~~~~~~~~~~~~~~--~~~~el~~~l~ 196 (205)
T PRK13582 147 VIAAGDSYNDTTMLGEADAGILFRPPANVIAEFPQFPAV--HTYDELLAAID 196 (205)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEECCCHHHHHhCCccccc--CCHHHHHHHHH
Confidence 999999999999999999999987654444445555 33 66776665544
No 62
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.65 E-value=1.1e-07 Score=102.63 Aligned_cols=128 Identities=26% Similarity=0.438 Sum_probs=96.3
Q ss_pred EEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce---------------------
Q 001896 787 ILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--------------------- 845 (998)
Q Consensus 787 i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~--------------------- 845 (998)
+++-.||+++.- ...+.+++.++|++|++.|++++++||++...+..+.+++|+..
T Consensus 2 i~~DlDGTLl~~---~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~~~~i~~~ 78 (256)
T TIGR00099 2 IFIDLDGTLLND---DHTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDTPFITANGAAVIDDQGEILYKK 78 (256)
T ss_pred EEEeCCCCCCCC---CCccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEECCCCCEEeec
Confidence 344567777742 34588999999999999999999999999999999999998750
Q ss_pred ----------------------------EEEe------------------------------------------------
Q 001896 846 ----------------------------VMAD------------------------------------------------ 849 (998)
Q Consensus 846 ----------------------------~~~~------------------------------------------------ 849 (998)
++..
T Consensus 79 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (256)
T TIGR00099 79 PLDLDLVEEILNFLKKHGLDVILYGDDSIYASKNDPEYFTIFKKFLGEPKLEVVDIQYLPDDILKILLLFLDPEDLDLLI 158 (256)
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEEeCCeEEecCCCcchhHHHHHhccCCcceeccchhhhcccceEEEEECCHHHHHHHH
Confidence 0000
Q ss_pred -----------------------cCcc--cHHHHHHHHhhc----CCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHH
Q 001896 850 -----------------------VMPA--GKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIE 900 (998)
Q Consensus 850 -----------------------~~p~--~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~ 900 (998)
+.|. .|...++.+.+. .+.++++||+.||.+|++.|+.+++|+++.+..++
T Consensus 159 ~~~~~~~~~~~~~~~~s~~~~leI~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na~~~~k~ 238 (256)
T TIGR00099 159 EALNKLELEENVSVVSSGPYSIEITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNADEELKA 238 (256)
T ss_pred HHhhhhhhcCCEEEEEecCceEEecCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCchHHHHH
Confidence 0000 122222222211 14599999999999999999999999999999999
Q ss_pred hcCEEEecCChhHHHHH
Q 001896 901 AADYVLMRNSLEDVIIA 917 (998)
Q Consensus 901 ~ad~vl~~~~~~~l~~~ 917 (998)
.||+++.+++-+++.++
T Consensus 239 ~a~~~~~~n~~dGV~~~ 255 (256)
T TIGR00099 239 LADYVTDSNNEDGVALA 255 (256)
T ss_pred hCCEEecCCCCcchhhh
Confidence 99999988888887664
No 63
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.56 E-value=2.6e-07 Score=95.83 Aligned_cols=100 Identities=25% Similarity=0.353 Sum_probs=81.3
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEe-----------------cCcccHHHHHHHHhhc-
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----------------VMPAGKADAVRSFQKD- 865 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~- 865 (998)
+++|++.+.++.|+++|++++++|+.....+..+++.+|+..+++. ..|..|.++++.+.++
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~~ 159 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKREL 159 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999876542 1234566676665443
Q ss_pred ---CCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcC
Q 001896 866 ---GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAAD 903 (998)
Q Consensus 866 ---g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad 903 (998)
.+.++|+||+.||.+|++.||++++++......+.++|
T Consensus 160 ~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~~~~~a~~ 200 (201)
T TIGR01491 160 NPSLTETVAVGDSKNDLPMFEVADISISLGDEGHADYLAKD 200 (201)
T ss_pred CCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCccchhhccc
Confidence 35699999999999999999999999765544544444
No 64
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.51 E-value=4.1e-07 Score=95.64 Aligned_cols=116 Identities=23% Similarity=0.320 Sum_probs=91.3
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-----Cccc------HHHHHHHHhhcCCEEE
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----MPAG------KADAVRSFQKDGSIVA 870 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-----~p~~------K~~~v~~l~~~g~~v~ 870 (998)
...+-|+++++++.|+++|++..++|+++...+..+.+.+|+..+|..+ .+.. ....++.+....+.++
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 4568899999999999999999999999999999999999998766432 2222 2234444444444799
Q ss_pred EEcCCCCCHHHHhcCC---eEEEecC--chHHHHHhcCEEEecCChhHHHHHHH
Q 001896 871 MVGDGINDSPALAAAD---VGMAIGA--GTDIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 871 ~vGDg~nD~~al~~A~---vgia~~~--~~~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
||||..+|+.|-++|+ +|+.+|. ........+|+++ +++..+...+.
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi--~~~~el~~~l~ 218 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVI--DSLAELLALLA 218 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEE--CCHHHHHHHHh
Confidence 9999999999999998 7888884 3455666699998 77888776654
No 65
>PLN02954 phosphoserine phosphatase
Probab=98.51 E-value=9.9e-07 Score=93.26 Aligned_cols=112 Identities=26% Similarity=0.384 Sum_probs=87.2
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc--eEEEe-------------------cCcccHHHHHHHH
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--DVMAD-------------------VMPAGKADAVRSF 862 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~--~~~~~-------------------~~p~~K~~~v~~l 862 (998)
.++|++.++++.|++.|+++.++||.....+..+++.+|++ ++++. .....|.+.++.+
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~ 163 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHI 163 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHH
Confidence 47899999999999999999999999999999999999996 45542 0123588888877
Q ss_pred hhc--CCEEEEEcCCCCCHHHHhc--CCeEEEecCc--hHHHHHhcCEEEecCChhHHHHH
Q 001896 863 QKD--GSIVAMVGDGINDSPALAA--ADVGMAIGAG--TDIAIEAADYVLMRNSLEDVIIA 917 (998)
Q Consensus 863 ~~~--g~~v~~vGDg~nD~~al~~--A~vgia~~~~--~~~~~~~ad~vl~~~~~~~l~~~ 917 (998)
.++ .+.++||||+.||..|.++ ++++++.|.. .+.....+|.++ +++..+...
T Consensus 164 ~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~el~~~ 222 (224)
T PLN02954 164 KKKHGYKTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFV--TDFQDLIEV 222 (224)
T ss_pred HHHcCCCceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEE--CCHHHHHHh
Confidence 654 3579999999999999888 5666776632 233455689888 567776654
No 66
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.49 E-value=1.9e-07 Score=90.10 Aligned_cols=90 Identities=26% Similarity=0.406 Sum_probs=76.9
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce--EEEec-------------------CcccHHHHHHH
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMADV-------------------MPAGKADAVRS 861 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~--~~~~~-------------------~p~~K~~~v~~ 861 (998)
-.+.|++++.++.|+++|.+++++||--...+..++.++||+. +|++. ....|.++++.
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~ 166 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIAL 166 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHH
Confidence 4577999999999999999999999999999999999999984 55542 13469999999
Q ss_pred Hhhc--CCEEEEEcCCCCCHHHHhcCCeEEEec
Q 001896 862 FQKD--GSIVAMVGDGINDSPALAAADVGMAIG 892 (998)
Q Consensus 862 l~~~--g~~v~~vGDg~nD~~al~~A~vgia~~ 892 (998)
+++. -+.++|||||.||.+|+..||.=|+.|
T Consensus 167 lrk~~~~~~~~mvGDGatDlea~~pa~afi~~~ 199 (227)
T KOG1615|consen 167 LRKNYNYKTIVMVGDGATDLEAMPPADAFIGFG 199 (227)
T ss_pred HHhCCChheeEEecCCccccccCCchhhhhccC
Confidence 9874 357999999999999999987777775
No 67
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.47 E-value=1.3e-06 Score=95.18 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=50.0
Q ss_pred CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc
Q 001896 783 ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 844 (998)
Q Consensus 783 g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~ 844 (998)
..+.++.-.||+++.- ...+.+.++++|++|+++|++++++||++...+..+++++|++
T Consensus 6 ~~~lI~~DlDGTLL~~---~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 6 DPLLIFTDLDGTLLDS---HTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CCeEEEEeCccCCcCC---CCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 3566777889998752 3346688999999999999999999999999999999999884
No 68
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.44 E-value=1.7e-06 Score=94.36 Aligned_cols=58 Identities=14% Similarity=0.230 Sum_probs=49.3
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc
Q 001896 784 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 844 (998)
Q Consensus 784 ~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~ 844 (998)
.+.+++-.||+++.- ...+.+.+.++|++|++.|++++++||++...+..+.+++|+.
T Consensus 4 ~kli~~DlDGTLl~~---~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 4 KLLVFTDLDGTLLDH---HTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred ceEEEEcCcccCcCC---CCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 346677778888752 3457788999999999999999999999999999999999975
No 69
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.36 E-value=3e-06 Score=88.80 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=86.7
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCc-ceEEEe-----------cCc------------ccHHHH
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI-QDVMAD-----------VMP------------AGKADA 858 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi-~~~~~~-----------~~p------------~~K~~~ 858 (998)
.+++|++.+.++.|++.|++++|+||.....+..+.+.++. ..++++ ..| ..|..+
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 47899999999999999999999999999999999988753 334331 113 248899
Q ss_pred HHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCChhHHHHHHH
Q 001896 859 VRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 859 v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
++.++...+.+.|||||.||..|++.||+.++-+.-.+..++.---...=+++..+...++
T Consensus 149 l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~~ar~~l~~~~~~~~~~~~~~~~f~di~~~l~ 209 (214)
T TIGR03333 149 IRKLSEPNDYHIVIGDSVTDVEAAKQSDLCFARDYLLNECEELGLNHAPFQDFYDVRKELE 209 (214)
T ss_pred HHHHhhcCCcEEEEeCCHHHHHHHHhCCeeEehHHHHHHHHHcCCCccCcCCHHHHHHHHH
Confidence 9998888888999999999999999999987765322222221111222366777776664
No 70
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.35 E-value=2.1e-06 Score=89.41 Aligned_cols=114 Identities=21% Similarity=0.302 Sum_probs=85.9
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-------CcccHHHHHH----HHhhcCCEEEE
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGKADAVR----SFQKDGSIVAM 871 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~~v~----~l~~~g~~v~~ 871 (998)
-++.|++.++++.|+++|+++.++||.+...+..+.+.+|+..+|..+ .++.+.+.++ .+.-..+.++|
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~ 153 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVM 153 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEE
Confidence 378899999999999999999999999999999999999997654432 1233344333 33334567999
Q ss_pred EcCCCCCHHHHhcCCe---EEEecCc--hHHHHHhcCEEEecCChhHHHHHH
Q 001896 872 VGDGINDSPALAAADV---GMAIGAG--TDIAIEAADYVLMRNSLEDVIIAI 918 (998)
Q Consensus 872 vGDg~nD~~al~~A~v---gia~~~~--~~~~~~~ad~vl~~~~~~~l~~~i 918 (998)
|||+.+|+.+.+++++ ++.+|.+ .+...+.+|+++ +++..+..++
T Consensus 154 igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~--~~~~~l~~~~ 203 (205)
T TIGR01454 154 VGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLL--RKPQSLLALC 203 (205)
T ss_pred EcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeee--CCHHHHHHHh
Confidence 9999999999999995 4556643 334566789887 6677776554
No 71
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.33 E-value=3.2e-06 Score=91.25 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=46.2
Q ss_pred CEEEEEcCCCCCHHHHhcCCeEEEecCch---HHHHHh--c-CEEEecCChhHHHHHHH
Q 001896 867 SIVAMVGDGINDSPALAAADVGMAIGAGT---DIAIEA--A-DYVLMRNSLEDVIIAID 919 (998)
Q Consensus 867 ~~v~~vGDg~nD~~al~~A~vgia~~~~~---~~~~~~--a-d~vl~~~~~~~l~~~i~ 919 (998)
+.++++||+.||.+|++.|++||+|+++. +..++. | +++..+++-+++.++++
T Consensus 195 ~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~~~lk~~~~a~~~vt~~~~~dGva~~l~ 253 (256)
T TIGR01486 195 IKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPNVSLKPGDPGSFLLTPAPGPEGWREALE 253 (256)
T ss_pred ceEEEEcCCHhhHHHHHHCCEEEEeCCCCCCccccCccCCCcEEEcCCCCcHHHHHHHH
Confidence 46999999999999999999999999987 467776 4 58888889999998876
No 72
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.29 E-value=3.8e-06 Score=89.51 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=54.2
Q ss_pred cHHHHHHHHhhc-C---CEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcC----EEEecCChhHHHHHHHH
Q 001896 854 GKADAVRSFQKD-G---SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAAD----YVLMRNSLEDVIIAIDL 920 (998)
Q Consensus 854 ~K~~~v~~l~~~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad----~vl~~~~~~~l~~~i~~ 920 (998)
.|...++.+.++ | ..++++||+.||.+|++.++.||+|+++.+..++.|| ++...++-.++.++|+.
T Consensus 159 ~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~k~~a~~~~~~v~~~~~~~Gv~~~i~~ 233 (236)
T TIGR02471 159 SKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNHDPELEGLRHQQRIYFANNPHAFGILEGINH 233 (236)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHHHHhhcCCcEEEcCCCChhHHHHHHHh
Confidence 355555555432 2 3589999999999999999999999999999999999 77777777888888763
No 73
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.28 E-value=3.3e-06 Score=88.80 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=84.4
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce--EEEe---c--------C--c----------ccHHHH
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMAD---V--------M--P----------AGKADA 858 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~--~~~~---~--------~--p----------~~K~~~ 858 (998)
+++|++.+.++.|++.|+++.|+||.....+..+.+++ +.. +++. . . | ..|..+
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 68999999999999999999999999999999999988 642 5432 1 1 1 238889
Q ss_pred HHHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHh--cCEEEecCChhHHHHHHH
Q 001896 859 VRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEA--ADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 859 v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~--ad~vl~~~~~~~l~~~i~ 919 (998)
++.++.....+.|||||.||..|.++||+.++-+.-.+.+.+. +.+.+ +++..+...++
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a~~~l~~~~~~~~~~~~~~--~~f~ei~~~l~ 213 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFARDFLITKCEELGIPYTPF--ETFHDVQTELK 213 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCcceeHHHHHHHHHHcCCCcccc--CCHHHHHHHHH
Confidence 9988877788999999999999999999977743211222222 33222 66777766653
No 74
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.26 E-value=3.9e-06 Score=88.86 Aligned_cols=118 Identities=22% Similarity=0.290 Sum_probs=89.3
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecC-------cccHH----HHHHHHhhcCCEEE
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM-------PAGKA----DAVRSFQKDGSIVA 870 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~-------p~~K~----~~v~~l~~~g~~v~ 870 (998)
...+.|++.++++.|++.|++++++||........+.+.+|+.++|.... .+.+. .+++.++...+.++
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 170 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEML 170 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheE
Confidence 35688999999999999999999999999999999999999976554331 11122 34444554567899
Q ss_pred EEcCCCCCHHHHhcCCe---EEEecC--chHHHHHhcCEEEecCChhHHHHHHHHH
Q 001896 871 MVGDGINDSPALAAADV---GMAIGA--GTDIAIEAADYVLMRNSLEDVIIAIDLS 921 (998)
Q Consensus 871 ~vGDg~nD~~al~~A~v---gia~~~--~~~~~~~~ad~vl~~~~~~~l~~~i~~~ 921 (998)
+|||+.+|+.+.+++++ ++..|. ..+.....++.++ +++..+...+.++
T Consensus 171 ~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i--~~~~~l~~~l~~~ 224 (226)
T PRK13222 171 FVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVI--DHFAELLPLLGLA 224 (226)
T ss_pred EECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEE--CCHHHHHHHHHHh
Confidence 99999999999999996 444442 2344455788877 7899998887653
No 75
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.26 E-value=2.9e-06 Score=86.94 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=74.8
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecC---------------------------cccH
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM---------------------------PAGK 855 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~---------------------------p~~K 855 (998)
-+++|++.+.++.|++.|++++++|+.+......+.+.+|+..+|..+- ...|
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 4788999999999999999999999999999999999999875432211 1249
Q ss_pred HHHHHHHhhc-CCEEEEEcCCCCCHHHHhcCCeEEE
Q 001896 856 ADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMA 890 (998)
Q Consensus 856 ~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia 890 (998)
.++++.++++ .+.+.|+|||.||..|.++||+-.|
T Consensus 151 ~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~a 186 (188)
T TIGR01489 151 GKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVFA 186 (188)
T ss_pred HHHHHHHHhhcCceEEEECCCcchhchHhcCCcccc
Confidence 9999999887 8899999999999999999987544
No 76
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.21 E-value=6.2e-06 Score=86.50 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=84.9
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecC-------cccHHH----HHHHHhhcCCEEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM-------PAGKAD----AVRSFQKDGSIVAMV 872 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~-------p~~K~~----~v~~l~~~g~~v~~v 872 (998)
++.|++.++++.|+++|+++.++|+.....+..+.+.+|+..+|..+. ++.|.+ +++.+....+.++||
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMV 161 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEE
Confidence 477999999999999999999999999999999999999987664431 122333 333333335679999
Q ss_pred cCCCCCHHHHhcCCe---EEEecCc-hH-HHHHhcCEEEecCChhHHHHHH
Q 001896 873 GDGINDSPALAAADV---GMAIGAG-TD-IAIEAADYVLMRNSLEDVIIAI 918 (998)
Q Consensus 873 GDg~nD~~al~~A~v---gia~~~~-~~-~~~~~ad~vl~~~~~~~l~~~i 918 (998)
||+.+|..|.++|++ ++..|.. .+ .....+|+++ +++..+..++
T Consensus 162 GDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i--~~~~~l~~~i 210 (214)
T PRK13288 162 GDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFML--DKMSDLLAIV 210 (214)
T ss_pred CCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEE--CCHHHHHHHH
Confidence 999999999999995 5556632 22 3344688876 6788877765
No 77
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.20 E-value=5.3e-06 Score=86.12 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=77.1
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEe------------------cCcccHHHHHHHHh
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD------------------VMPAGKADAVRSFQ 863 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~------------------~~p~~K~~~v~~l~ 863 (998)
...++|++.+.++.++++|++++++|+.....+..+++.+|++++++. +.+++|...++.+.
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999876543 12356777776654
Q ss_pred h-cC---CEEEEEcCCCCCHHHHhcCCeEEEecC
Q 001896 864 K-DG---SIVAMVGDGINDSPALAAADVGMAIGA 893 (998)
Q Consensus 864 ~-~g---~~v~~vGDg~nD~~al~~A~vgia~~~ 893 (998)
+ .+ +.+.++||+.+|.++++.|+.++++..
T Consensus 165 ~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~ 198 (202)
T TIGR01490 165 AEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNP 198 (202)
T ss_pred HHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCC
Confidence 3 33 368999999999999999999998863
No 78
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.18 E-value=2.8e-06 Score=86.15 Aligned_cols=82 Identities=27% Similarity=0.379 Sum_probs=69.1
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEe-------------------cCcccHHHHHHHHhh
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-------------------VMPAGKADAVRSFQK 864 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~-------------------~~p~~K~~~v~~l~~ 864 (998)
+++|++.+.++.+++.|++++++||.....+..+++.+|++.+++. ..+..|...++.+.+
T Consensus 73 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~ 152 (177)
T TIGR01488 73 ALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLE 152 (177)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999865432 223578888888765
Q ss_pred c----CCEEEEEcCCCCCHHHHhcC
Q 001896 865 D----GSIVAMVGDGINDSPALAAA 885 (998)
Q Consensus 865 ~----g~~v~~vGDg~nD~~al~~A 885 (998)
+ .+.++++|||.||.+|++.|
T Consensus 153 ~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 153 ESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 4 35699999999999999875
No 79
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.12 E-value=6.7e-06 Score=84.55 Aligned_cols=77 Identities=30% Similarity=0.508 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce--EEEe-------------cCcc-c--HHHHHHHH------
Q 001896 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMAD-------------VMPA-G--KADAVRSF------ 862 (998)
Q Consensus 807 ~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~--~~~~-------------~~p~-~--K~~~v~~l------ 862 (998)
+++.+.|+.++++|++++|+||+....+..+++.+|++. +++. +++. + |...++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 777799999999999999999999999999999999985 3332 2222 3 99999999
Q ss_pred hhcCCEEEEEcCCCCCHHHHh
Q 001896 863 QKDGSIVAMVGDGINDSPALA 883 (998)
Q Consensus 863 ~~~g~~v~~vGDg~nD~~al~ 883 (998)
+.....+.++|||.||.+|||
T Consensus 172 ~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 172 DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp THTCCEEEEEESSGGGHHHHH
T ss_pred CCCCCeEEEEECCHHHHHHhC
Confidence 455789999999999999986
No 80
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.08 E-value=2.6e-05 Score=83.85 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=96.3
Q ss_pred EEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce---------------------
Q 001896 787 ILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--------------------- 845 (998)
Q Consensus 787 i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~--------------------- 845 (998)
++.-.|++++..-.-..+..|...++++++++.|+.++++||++....+.+.+++++..
T Consensus 4 i~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~~~~~~~ 83 (249)
T TIGR01485 4 LVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYGGAEVPD 83 (249)
T ss_pred EEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeCCCCcCC
Confidence 44455777773111145677999999999999999999999999999999999888740
Q ss_pred ----------------------------------------E----------------------------EE-----ecCc
Q 001896 846 ----------------------------------------V----------------------------MA-----DVMP 852 (998)
Q Consensus 846 ----------------------------------------~----------------------------~~-----~~~p 852 (998)
+ .+ ++.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~~ 163 (249)
T TIGR01485 84 QHWAEYLSEKWQRDIVVAITDKFEELKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDILP 163 (249)
T ss_pred HHHHHHHhcccCHHHHHHHHhcCcccccCCccccCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEEe
Confidence 0 00 1122
Q ss_pred --ccHHHHHHHHhhc----CCEEEEEcCCCCCHHHHhc-CCeEEEecCchHHHHHhcC-------EEEecCChhHHHHHH
Q 001896 853 --AGKADAVRSFQKD----GSIVAMVGDGINDSPALAA-ADVGMAIGAGTDIAIEAAD-------YVLMRNSLEDVIIAI 918 (998)
Q Consensus 853 --~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~-A~vgia~~~~~~~~~~~ad-------~vl~~~~~~~l~~~i 918 (998)
..|...++.+.+. ...|+++||+.||.+|++. ++.|++|+++.+..++.++ ++.-...-.++.+++
T Consensus 164 ~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~k~~~~~~~~~~~~~~~~~~~~Gi~e~l 243 (249)
T TIGR01485 164 QGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEELLQWYDENAKDKIYHASERCAGGIIEAI 243 (249)
T ss_pred CCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCHHHHHHHHHhcccCcEEEecCCCcHHHHHHH
Confidence 2455555555442 3579999999999999998 6799999999988887543 444444566777766
Q ss_pred H
Q 001896 919 D 919 (998)
Q Consensus 919 ~ 919 (998)
+
T Consensus 244 ~ 244 (249)
T TIGR01485 244 A 244 (249)
T ss_pred H
Confidence 5
No 81
>PRK06769 hypothetical protein; Validated
Probab=98.07 E-value=8.3e-06 Score=82.11 Aligned_cols=133 Identities=18% Similarity=0.159 Sum_probs=88.8
Q ss_pred CCeEEEEEECCeEEEEEEecC----CCcHhHHHHHHHHHhCCCEEEEEcCCCHH--------HHHHHHHHhCcceEEEec
Q 001896 783 ARTGILVAYDDNLIGVMGIAD----PVKREAAVVVEGLLKMGVRPVMVTGDNWR--------TAHAVAREIGIQDVMADV 850 (998)
Q Consensus 783 g~~~i~va~~~~~lG~i~l~d----~~r~~~~~~i~~l~~~gi~~~i~tgd~~~--------~a~~ia~~~gi~~~~~~~ 850 (998)
|++++.+-+|+++.|.-.+.+ ++.|++++++++|++.|+++.++|+.+.. ......+.+|++.++...
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 82 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCP 82 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECc
Confidence 678899999999877744332 36799999999999999999999987641 234446678898876432
Q ss_pred C--------cccHHH----HHHHHhhcCCEEEEEcCCCCCHHHHhcCCeE---EEecCchHH--------HHHhcCEEEe
Q 001896 851 M--------PAGKAD----AVRSFQKDGSIVAMVGDGINDSPALAAADVG---MAIGAGTDI--------AIEAADYVLM 907 (998)
Q Consensus 851 ~--------p~~K~~----~v~~l~~~g~~v~~vGDg~nD~~al~~A~vg---ia~~~~~~~--------~~~~ad~vl~ 907 (998)
. .+.+.+ +++.+....+.++||||..+|+.+-++|++- +..|.+.+. ....+|.++
T Consensus 83 ~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~- 161 (173)
T PRK06769 83 HKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIA- 161 (173)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchh-
Confidence 1 122222 3333333456799999999999999999943 444433321 122355555
Q ss_pred cCChhHHHHH
Q 001896 908 RNSLEDVIIA 917 (998)
Q Consensus 908 ~~~~~~l~~~ 917 (998)
+++..+...
T Consensus 162 -~~~~el~~~ 170 (173)
T PRK06769 162 -ENFEDAVNW 170 (173)
T ss_pred -hCHHHHHHH
Confidence 556666554
No 82
>PRK08238 hypothetical protein; Validated
Probab=98.07 E-value=6.2e-05 Score=87.52 Aligned_cols=118 Identities=23% Similarity=0.234 Sum_probs=86.5
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCc-ceEEE-----ecCcccHHHHHHHHhhcCCEEEEEcCCCC
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI-QDVMA-----DVMPAGKADAVRSFQKDGSIVAMVGDGIN 877 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi-~~~~~-----~~~p~~K~~~v~~l~~~g~~v~~vGDg~n 877 (998)
+++|++.+.+++++++|++++++|+.+...+..+++++|+ +.+.+ +..|+.|.+.++....+ +.+.++||+.+
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd~Vigsd~~~~~kg~~K~~~l~~~l~~-~~~~yvGDS~~ 150 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFDGVFASDGTTNLKGAAKAAALVEAFGE-RGFDYAGNSAA 150 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCEEEeCCCccccCCchHHHHHHHHhCc-cCeeEecCCHH
Confidence 4789999999999999999999999999999999999996 66554 24567787655533222 23789999999
Q ss_pred CHHHHhcCCeEEEecCchH---HHHHhcCEEE-ecCChhHHHHHHHHHH
Q 001896 878 DSPALAAADVGMAIGAGTD---IAIEAADYVL-MRNSLEDVIIAIDLSR 922 (998)
Q Consensus 878 D~~al~~A~vgia~~~~~~---~~~~~ad~vl-~~~~~~~l~~~i~~~r 922 (998)
|.++++.|+-+++++.+.. .+++....+. ....-..+...+++.|
T Consensus 151 Dlp~~~~A~~av~Vn~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~l~R 199 (479)
T PRK08238 151 DLPVWAAARRAIVVGASPGVARAARALGPVERVFPPRPARLRTWLKALR 199 (479)
T ss_pred HHHHHHhCCCeEEECCCHHHHHHHHHcCCcceecCCCchHHHHHHHHhC
Confidence 9999999999999986543 3333333333 2233334555565555
No 83
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.06 E-value=2.4e-05 Score=84.77 Aligned_cols=113 Identities=17% Similarity=0.261 Sum_probs=85.3
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec---Cc-ccHHHHHHHH----hhcCCEEEEEcCC
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---MP-AGKADAVRSF----QKDGSIVAMVGDG 875 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~---~p-~~K~~~v~~l----~~~g~~v~~vGDg 875 (998)
++.|++.++++.|++.|+++.++|+.+...+..+.+.+|+.++|..+ .+ ..|.+.+..+ .-..+.++||||+
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IGDs 221 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVGDE 221 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEECCC
Confidence 57899999999999999999999999999999999999998765443 11 1244444333 2234679999999
Q ss_pred CCCHHHHhcCCe---EEEecCchH--HHHHhcCEEEecCChhHHHHHH
Q 001896 876 INDSPALAAADV---GMAIGAGTD--IAIEAADYVLMRNSLEDVIIAI 918 (998)
Q Consensus 876 ~nD~~al~~A~v---gia~~~~~~--~~~~~ad~vl~~~~~~~l~~~i 918 (998)
.+|+.+.++|++ ++..|.... .....+|+++ +++..+..++
T Consensus 222 ~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i--~~~~eL~~~~ 267 (273)
T PRK13225 222 TRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLL--ETPSDLLQAV 267 (273)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEE--CCHHHHHHHH
Confidence 999999999994 455553322 2334689887 7788887765
No 84
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.06 E-value=2.5e-05 Score=84.43 Aligned_cols=131 Identities=18% Similarity=0.309 Sum_probs=94.5
Q ss_pred CeEEEEEECCeEEEEEEe--cCCCcHhHHHHHHHHHh-CCCEEEEEcCCCHHHHHHHHHHhCcc----------------
Q 001896 784 RTGILVAYDDNLIGVMGI--ADPVKREAAVVVEGLLK-MGVRPVMVTGDNWRTAHAVAREIGIQ---------------- 844 (998)
Q Consensus 784 ~~~i~va~~~~~lG~i~l--~d~~r~~~~~~i~~l~~-~gi~~~i~tgd~~~~a~~ia~~~gi~---------------- 844 (998)
...+++-+||+++....= .-.+.++++++|+.|++ .|+.++++||++......+.+.+++.
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~ 93 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKT 93 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccceEEEeCCCeeecCCCCe
Confidence 467888899998853211 12566899999999998 79999999999999999888776642
Q ss_pred ---------------------------------------------------------------------eEEEecCcc--
Q 001896 845 ---------------------------------------------------------------------DVMADVMPA-- 853 (998)
Q Consensus 845 ---------------------------------------------------------------------~~~~~~~p~-- 853 (998)
..+-++.|.
T Consensus 94 ~~~~l~~~~~~~i~~~l~~~~~~~pg~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~~~~~~~g~~~lEi~p~g~ 173 (266)
T PRK10187 94 HIVHLPDAIARDISVQLHTALAQLPGAELEAKGMAFALHYRQAPQHEDALLALAQRITQIWPQLALQPGKCVVEIKPRGT 173 (266)
T ss_pred eeccCChhHHHHHHHHHHHHhccCCCcEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCCceEEeCCCEEEEeeCCCC
Confidence 011111221
Q ss_pred cHHHHHHHHhhc----CCEEEEEcCCCCCHHHHhcC----CeEEEecCchHHHHHhcCEEEecCChhHHHHHHHH
Q 001896 854 GKADAVRSFQKD----GSIVAMVGDGINDSPALAAA----DVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDL 920 (998)
Q Consensus 854 ~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A----~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~ 920 (998)
+|...++.+.+. ...++++||+.||.+|++.+ +.||+||++. ..|++.+ ++...+..++..
T Consensus 174 ~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~----~~A~~~l--~~~~~v~~~L~~ 242 (266)
T PRK10187 174 NKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA----TQASWRL--AGVPDVWSWLEM 242 (266)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC----CcCeEeC--CCHHHHHHHHHH
Confidence 455555544332 35799999999999999999 9999999875 3577776 567777766643
No 85
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.05 E-value=1.1e-05 Score=84.63 Aligned_cols=111 Identities=19% Similarity=0.209 Sum_probs=80.9
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-----C--cccHHHHHH----HHhhcCCEEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----M--PAGKADAVR----SFQKDGSIVAMV 872 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-----~--p~~K~~~v~----~l~~~g~~v~~v 872 (998)
++.|++.++++.|+++|+++.++|+.+...+..+.+++|+..+|..+ . ++.+.+.+. .+....+.++||
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 164 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYV 164 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEe
Confidence 67899999999999999999999999999999999999987544322 1 122333333 333334679999
Q ss_pred cCCCCCHHHHhcCCeE---EEecCc--hHHHHHhcCEEEecCChhHHHH
Q 001896 873 GDGINDSPALAAADVG---MAIGAG--TDIAIEAADYVLMRNSLEDVII 916 (998)
Q Consensus 873 GDg~nD~~al~~A~vg---ia~~~~--~~~~~~~ad~vl~~~~~~~l~~ 916 (998)
||+.+|+.+.++|++. +..|.. .......+|.++ +++..+..
T Consensus 165 gDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i--~~~~~l~~ 211 (213)
T TIGR01449 165 GDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLY--DSLNELPP 211 (213)
T ss_pred CCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEe--CCHHHHHh
Confidence 9999999999999954 444432 223334688877 66776654
No 86
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.04 E-value=2e-05 Score=85.72 Aligned_cols=116 Identities=23% Similarity=0.228 Sum_probs=85.1
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-----CcccH--HHHHHH----HhhcCCEEE
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----MPAGK--ADAVRS----FQKDGSIVA 870 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-----~p~~K--~~~v~~----l~~~g~~v~ 870 (998)
..++.|++.++++.|++.|++++++||.+...+..+.+++|+..+|..+ .+..| .+.++. +.-..+.++
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 3578899999999999999999999999999999999999987654322 22233 333333 322356799
Q ss_pred EEcCCCCCHHHHhcCCe---EEEecC--chHHHHHhcCEEEecCChhHHHHHHH
Q 001896 871 MVGDGINDSPALAAADV---GMAIGA--GTDIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 871 ~vGDg~nD~~al~~A~v---gia~~~--~~~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
||||+.||+.+.++|++ ++..|. ..+.....+|.++ +++..+..++.
T Consensus 179 ~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi--~~l~el~~~~~ 230 (272)
T PRK13223 179 FVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVI--DDLRALLPGCA 230 (272)
T ss_pred EECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEE--CCHHHHHHHHh
Confidence 99999999999999995 444452 2233445788887 67888776544
No 87
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.99 E-value=2.5e-05 Score=82.81 Aligned_cols=114 Identities=18% Similarity=0.065 Sum_probs=83.8
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-----C--cccHH----HHHHHHhhcCCEEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----M--PAGKA----DAVRSFQKDGSIVAMV 872 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-----~--p~~K~----~~v~~l~~~g~~v~~v 872 (998)
++.|++.++++.|++.|+++.++|+.+...+..+.+++|+.+.|..+ . ++.+. .+++.+.-..+.++||
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~I 174 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYV 174 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEe
Confidence 57899999999999999999999999999999899999987644322 1 12222 3444444456789999
Q ss_pred cCCCCCHHHHhcCC---eEEEecCc--h-HHHHHhcCEEEecCChhHHHHHHH
Q 001896 873 GDGINDSPALAAAD---VGMAIGAG--T-DIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 873 GDg~nD~~al~~A~---vgia~~~~--~-~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
||+.+|+.+.++|+ +++..|.. . ......+|+++ +++..+.+.+.
T Consensus 175 GDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i--~~~~el~~~~~ 225 (229)
T PRK13226 175 GDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLV--EQPQLLWNPAT 225 (229)
T ss_pred CCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeee--CCHHHHHHHhc
Confidence 99999999999999 44556632 1 22334688888 66777766543
No 88
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.95 E-value=1.6e-05 Score=95.70 Aligned_cols=67 Identities=46% Similarity=0.772 Sum_probs=61.4
Q ss_pred eEEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCC-hHHHHHHHHhcCccchh
Q 001896 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVK-DEDIKNAIEDAGFEAEI 113 (998)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~-~~~i~~~i~~~Gy~~~~ 113 (998)
++.++.++||+|++|+++|| +|++++||.++++|+.++++.+.+++...+ .+++...+++.||....
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 46779999999999999999 999999999999999999999999876666 78999999999998754
No 89
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.95 E-value=2.2e-05 Score=82.76 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=81.3
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-------CcccHHHHHHH-Hhhc---CCEEEE
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGKADAVRS-FQKD---GSIVAM 871 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~~v~~-l~~~---g~~v~~ 871 (998)
-++.|++.++++.|++.|++++++|+........+.+++|+..+|..+ .++.+.+..+. +++. .+.++|
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 170 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVA 170 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEE
Confidence 568899999999999999999999999999999999999998766544 12333333333 3333 357999
Q ss_pred EcCCCCCHHHHhcCCeEEEe-cC---chHHHHHhcCEEEecCChhHHHH
Q 001896 872 VGDGINDSPALAAADVGMAI-GA---GTDIAIEAADYVLMRNSLEDVII 916 (998)
Q Consensus 872 vGDg~nD~~al~~A~vgia~-~~---~~~~~~~~ad~vl~~~~~~~l~~ 916 (998)
|||..||+.+.++|++.... .. ..+.-...+|.++ .++..+..
T Consensus 171 igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~--~~~~dl~~ 217 (222)
T PRK10826 171 LEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKL--ESLTELTA 217 (222)
T ss_pred EcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheec--cCHHHHhh
Confidence 99999999999999976433 22 2222234577776 55666543
No 90
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.92 E-value=3.7e-05 Score=82.86 Aligned_cols=113 Identities=21% Similarity=0.234 Sum_probs=80.7
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEE-Eec-C----cccH--HH----HHHHHhhc-CCEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM-ADV-M----PAGK--AD----AVRSFQKD-GSIVA 870 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~-~~~-~----p~~K--~~----~v~~l~~~-g~~v~ 870 (998)
++.|++.++++.|+++|+++.++|+.....+..+.+++|+..+| ..+ + +..| ++ +++.+.-. .+.++
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l 178 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACV 178 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchheE
Confidence 56799999999999999999999999999999999999887653 321 1 1112 22 33333322 45699
Q ss_pred EEcCCCCCHHHHhcCC---eEEEecCc----h---------------------HHHHHhcCEEEecCChhHHHHHH
Q 001896 871 MVGDGINDSPALAAAD---VGMAIGAG----T---------------------DIAIEAADYVLMRNSLEDVIIAI 918 (998)
Q Consensus 871 ~vGDg~nD~~al~~A~---vgia~~~~----~---------------------~~~~~~ad~vl~~~~~~~l~~~i 918 (998)
||||..+|+.+-++|+ ||+..|.. + +.....+|+++ +++..+..++
T Consensus 179 ~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~--~~~~el~~~~ 252 (253)
T TIGR01422 179 KVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKAAGAHYVI--DTLAELPAVI 252 (253)
T ss_pred EECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHhcCCCEeh--hcHHHHHHhh
Confidence 9999999999999999 55555532 1 22223578887 6777766543
No 91
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.83 E-value=0.011 Score=73.55 Aligned_cols=67 Identities=28% Similarity=0.485 Sum_probs=58.5
Q ss_pred ceeeeeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 001896 127 TIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (998)
Q Consensus 127 ~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~ 195 (998)
..+..++++||+|++|++++|+.+.+.+||.++.+++.+++..+.|++.. . +++.+.+++.||.+..
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~Gy~a~~ 118 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAGFSLRD 118 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhccccccc
Confidence 34567889999999999999999999999999999999999999998763 3 7777888999998753
No 92
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.82 E-value=7e-05 Score=80.33 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=79.5
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-------CcccHHH----HHHHHhhcCCEEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGKAD----AVRSFQKDGSIVAMV 872 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~----~v~~l~~~g~~v~~v 872 (998)
++.|++.++++.|+++|+++.++|+.+...+....+.+|+.++|..+ .++.+.+ +++.+.-..+.++||
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~v 187 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVF 187 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEE
Confidence 57899999999999999999999999999999999999998655432 1222222 334444345679999
Q ss_pred cCCCCCHHHHhcCCe---EEEecCchH-HHHHhcCEEEecCChhH
Q 001896 873 GDGINDSPALAAADV---GMAIGAGTD-IAIEAADYVLMRNSLED 913 (998)
Q Consensus 873 GDg~nD~~al~~A~v---gia~~~~~~-~~~~~ad~vl~~~~~~~ 913 (998)
||..+|+.+-++|++ ++..|...+ .....+|+++ +++..
T Consensus 188 gDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi--~~~~e 230 (248)
T PLN02770 188 EDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLI--KDYED 230 (248)
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEe--ccchh
Confidence 999999999999994 455553222 2234678877 44554
No 93
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.80 E-value=7e-05 Score=87.96 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=86.6
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec------CcccHHHHHHHHhh--cCCEEEEEcCC
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV------MPAGKADAVRSFQK--DGSIVAMVGDG 875 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~------~p~~K~~~v~~l~~--~g~~v~~vGDg 875 (998)
++.||+.++++.|++.|+++.++|+.....+..+.+.+|+.++|..+ .+..|++.+....+ ..+.++||||+
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~~~~~v~VGDs 409 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIKEAAVVGDR 409 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcCcceEEEEeCC
Confidence 67899999999999999999999999999999999999997655443 11234454443332 24679999999
Q ss_pred CCCHHHHhcCCeE---EEecCchHHHHHhcCEEEecCChhHHHHHHHHH
Q 001896 876 INDSPALAAADVG---MAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLS 921 (998)
Q Consensus 876 ~nD~~al~~A~vg---ia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~ 921 (998)
.+|+.+.++|++- +..+...+.....+|+++ +++..+..++...
T Consensus 410 ~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i--~~l~el~~~l~~~ 456 (459)
T PRK06698 410 LSDINAAKDNGLIAIGCNFDFAQEDELAQADIVI--DDLLELKGILSTV 456 (459)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEe--CCHHHHHHHHHHH
Confidence 9999999999953 333433322334688887 6788887776543
No 94
>PLN02382 probable sucrose-phosphatase
Probab=97.75 E-value=0.00021 Score=82.03 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=91.4
Q ss_pred EEEEECCeEEEEEEecC--CCcHhHHHHH-HHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce------------------
Q 001896 787 ILVAYDDNLIGVMGIAD--PVKREAAVVV-EGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------ 845 (998)
Q Consensus 787 i~va~~~~~lG~i~l~d--~~r~~~~~~i-~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~------------------ 845 (998)
|+.--|++++.- .| .+.+....++ +++++.|+.++++||++......+.+++++..
T Consensus 12 I~sDLDGTLL~~---~~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~~~I~~nGt~I~~~~~~ 88 (413)
T PLN02382 12 IVSDLDHTMVDH---HDPENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPDITIMSVGTEIAYGESM 88 (413)
T ss_pred EEEcCCCcCcCC---CCccchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCCEEEEcCCcEEEeCCCC
Confidence 334457777742 13 3443344444 88999999999999999999999999888640
Q ss_pred ----------------------------------------------------------------------------EEEe
Q 001896 846 ----------------------------------------------------------------------------VMAD 849 (998)
Q Consensus 846 ----------------------------------------------------------------------------~~~~ 849 (998)
.+-+
T Consensus 89 ~~d~~w~~~l~~~w~~~~v~~~~~~~~~l~~q~~~~~~~~Ki~~~~~~~~~~~~~~~l~~~~~~~g~~~~i~~s~~~~ld 168 (413)
T PLN02382 89 VPDHGWVEYLNKKWDREIVVEETSKFPELKLQPETEQRPHKVSFYVDKKKAQEVIKELSERLEKRGLDVKIIYSGGIDLD 168 (413)
T ss_pred ccChhHHHHHhccCChhhHHHHHhcCCCcccCCcccCCCeEEEEEechHHhHHHHHHHHHHHHhcCCcEEEEEECCcEEE
Confidence 0112
Q ss_pred cCcc--cHHHHHHHHhhc-------CCEEEEEcCCCCCHHHHhcCC-eEEEecCchHHHHHhc--------CEEEe-cCC
Q 001896 850 VMPA--GKADAVRSFQKD-------GSIVAMVGDGINDSPALAAAD-VGMAIGAGTDIAIEAA--------DYVLM-RNS 910 (998)
Q Consensus 850 ~~p~--~K~~~v~~l~~~-------g~~v~~vGDg~nD~~al~~A~-vgia~~~~~~~~~~~a--------d~vl~-~~~ 910 (998)
+.|. .|...++.|.+. ...++++||+.||.+||+.++ .||+|+|+.+..++.+ +++.. +++
T Consensus 169 I~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~~elk~~a~~~~~~~~~~~~a~~~~ 248 (413)
T PLN02382 169 VLPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQEELLQWYAENAKDNPKIIHATERC 248 (413)
T ss_pred EEeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCcHHHHHHHHhhccCCCcEEEcCCCC
Confidence 2332 376666666544 247899999999999999999 6999999999888743 55533 345
Q ss_pred hhHHHHHHH
Q 001896 911 LEDVIIAID 919 (998)
Q Consensus 911 ~~~l~~~i~ 919 (998)
-.++.++++
T Consensus 249 ~~GI~~al~ 257 (413)
T PLN02382 249 AAGIIQAIG 257 (413)
T ss_pred ccHHHHHHH
Confidence 666776664
No 95
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.74 E-value=0.00014 Score=79.05 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=80.0
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEE-Eec-----C--cccHHHH-HHHHhhc----CCEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM-ADV-----M--PAGKADA-VRSFQKD----GSIVA 870 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~-~~~-----~--p~~K~~~-v~~l~~~----g~~v~ 870 (998)
.+.|++.++|+.|++.|+++.++||.....+..+.+.+|+..++ ..+ . ++.++++ .+.+++. .+.++
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l 180 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACV 180 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceE
Confidence 57899999999999999999999999999988888877764432 111 1 1122232 2333332 35799
Q ss_pred EEcCCCCCHHHHhcCCe---EEEecCc-------------------------hHHHHHhcCEEEecCChhHHHHHHH
Q 001896 871 MVGDGINDSPALAAADV---GMAIGAG-------------------------TDIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 871 ~vGDg~nD~~al~~A~v---gia~~~~-------------------------~~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
||||+.+|+.+.++|++ |+..|.. .+.....+|+++ +++..+...+.
T Consensus 181 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~vi--~~~~~l~~~l~ 255 (267)
T PRK13478 181 KVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAGAHYVI--DTIADLPAVIA 255 (267)
T ss_pred EEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcCCCeeh--hhHHHHHHHHH
Confidence 99999999999999994 6666633 122234577777 77887777664
No 96
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.73 E-value=0.00011 Score=78.90 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=79.1
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-----C--cccHHH----HHHHHhhcCCEEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----M--PAGKAD----AVRSFQKDGSIVAMV 872 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-----~--p~~K~~----~v~~l~~~g~~v~~v 872 (998)
++.|++.++++.|+++|+++.++|+.+...+..+.+.+|+..+|..+ . ++.+.+ +++.+.-..+.++||
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~I 188 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVF 188 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEE
Confidence 56899999999999999999999999999999999999997544332 1 222233 333333345679999
Q ss_pred cCCCCCHHHHhcCCeE-EEe-cCchHHHHHhcCEEEecCChhHHH
Q 001896 873 GDGINDSPALAAADVG-MAI-GAGTDIAIEAADYVLMRNSLEDVI 915 (998)
Q Consensus 873 GDg~nD~~al~~A~vg-ia~-~~~~~~~~~~ad~vl~~~~~~~l~ 915 (998)
||..+|+.|.++|++- |++ |.........+|.++ ++++.+.
T Consensus 189 gDs~~Di~aA~~aG~~~i~v~g~~~~~~l~~ad~vi--~~~~el~ 231 (260)
T PLN03243 189 GNSNSSVEAAHDGCMKCVAVAGKHPVYELSAGDLVV--RRLDDLS 231 (260)
T ss_pred cCCHHHHHHHHHcCCEEEEEecCCchhhhccCCEEe--CCHHHHH
Confidence 9999999999999963 233 333232334578776 5566553
No 97
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.72 E-value=8.8e-05 Score=71.03 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=67.0
Q ss_pred ecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc----eEEEec-C--c----------------ccHH-
Q 001896 801 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----DVMADV-M--P----------------AGKA- 856 (998)
Q Consensus 801 l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~----~~~~~~-~--p----------------~~K~- 856 (998)
...++.+++.+.++.|++.|++++++||.....+....+.+|+. .++..- . + ..|.
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHH
Confidence 34588999999999999999999999999999999999999983 232211 0 0 2233
Q ss_pred ---HHHHHHhhcCCEEEEEcCCCCCHHHHhcC-CeEEE
Q 001896 857 ---DAVRSFQKDGSIVAMVGDGINDSPALAAA-DVGMA 890 (998)
Q Consensus 857 ---~~v~~l~~~g~~v~~vGDg~nD~~al~~A-~vgia 890 (998)
.+.+.+....+.++++||+.+|..+++.+ .-+|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 101 KLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred HHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 34444444456799999999999999984 34443
No 98
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.70 E-value=0.00037 Score=74.14 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=48.5
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc
Q 001896 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 844 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~ 844 (998)
+.|+.-.|++++- -.+...+.++++|++|+++|+.++++||+.......+.+++|+.
T Consensus 2 KLIftDLDGTLLd---~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 2 RLVLSSLDGSLLD---LEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred cEEEEeCCCCCcC---CCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 4566677888775 24557788999999999999999999999999999999999884
No 99
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.65 E-value=0.00015 Score=76.28 Aligned_cols=114 Identities=23% Similarity=0.257 Sum_probs=80.9
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc--eEEEec----C---cccHHHHHHH-Hhh---c-CCE
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--DVMADV----M---PAGKADAVRS-FQK---D-GSI 868 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~--~~~~~~----~---p~~K~~~v~~-l~~---~-g~~ 868 (998)
.++.||+.+.++.|+++|+++.++|+........+.+.+|+. ++|..+ . .+.+.++... +++ . .+.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 479999999999999999999999999999999999999986 543332 1 1122333332 222 2 367
Q ss_pred EEEEcCCCCCHHHHhcCCeEE--Ee--cCch-H-HHHHhcCEEEecCChhHHHHHH
Q 001896 869 VAMVGDGINDSPALAAADVGM--AI--GAGT-D-IAIEAADYVLMRNSLEDVIIAI 918 (998)
Q Consensus 869 v~~vGDg~nD~~al~~A~vgi--a~--~~~~-~-~~~~~ad~vl~~~~~~~l~~~i 918 (998)
++||||+.+|+.+.++|++.. ++ |... + .....+|.++ +++..+..++
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i--~~~~~l~~~~ 219 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVL--DSVADLPALL 219 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceee--cCHHHHHHhh
Confidence 999999999999999999875 23 2222 2 2233577776 6677766543
No 100
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.65 E-value=0.00017 Score=75.83 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=66.5
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCC----CHHHHHHHHHHhCcceEEEec-----CcccHHHHHHHHhhcCCEEEEEcC
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGD----NWRTAHAVAREIGIQDVMADV-----MPAGKADAVRSFQKDGSIVAMVGD 874 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd----~~~~a~~ia~~~gi~~~~~~~-----~p~~K~~~v~~l~~~g~~v~~vGD 874 (998)
.+.+++++.++.++++|+++.++|+. ...++..+.+.+|+++++..+ ....|......+++.+ .++|+||
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~~~-i~i~vGD 192 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQDKN-IRIHYGD 192 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHhCC-CeEEEeC
Confidence 45566999999999999999999998 777999999999998655432 1111222224455545 4899999
Q ss_pred CCCCHHHHhcCC---eEEEec
Q 001896 875 GINDSPALAAAD---VGMAIG 892 (998)
Q Consensus 875 g~nD~~al~~A~---vgia~~ 892 (998)
..||..+.++|+ +++.+|
T Consensus 193 s~~DI~aAk~AGi~~I~V~~g 213 (237)
T TIGR01672 193 SDNDITAAKEAGARGIRILRA 213 (237)
T ss_pred CHHHHHHHHHCCCCEEEEEec
Confidence 999999999999 556666
No 101
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.61 E-value=0.00059 Score=72.78 Aligned_cols=116 Identities=19% Similarity=0.249 Sum_probs=84.0
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc----eEEEec-----------Cc------ccHHHHHHH
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----DVMADV-----------MP------AGKADAVRS 861 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~----~~~~~~-----------~p------~~K~~~v~~ 861 (998)
-+++||+.+.++.|++.|+++.++||-....+..+.+++|+. .++++. .| ..|.+.+..
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~ 199 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVAL 199 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHH
Confidence 468999999999999999999999999999999999999984 342221 12 235554432
Q ss_pred -----Hh--hcCCEEEEEcCCCCCHHHHhcC---CeEEEec--Cc-----hHHHHHhcCEEEecCChhHHHHHH
Q 001896 862 -----FQ--KDGSIVAMVGDGINDSPALAAA---DVGMAIG--AG-----TDIAIEAADYVLMRNSLEDVIIAI 918 (998)
Q Consensus 862 -----l~--~~g~~v~~vGDg~nD~~al~~A---~vgia~~--~~-----~~~~~~~ad~vl~~~~~~~l~~~i 918 (998)
+. .....|.++|||.||+.|.... ..-+.+| +. -+.-.++-|+|+.+|.--.++..|
T Consensus 200 ~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~t~~v~~~i 273 (277)
T TIGR01544 200 RNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDETLEVANSI 273 (277)
T ss_pred HHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCCCchHHHHH
Confidence 12 2346799999999999997654 2234444 32 245678899999988766666554
No 102
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.60 E-value=0.00037 Score=56.37 Aligned_cols=67 Identities=34% Similarity=0.523 Sum_probs=57.7
Q ss_pred ceEEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccc
Q 001896 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111 (998)
Q Consensus 45 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 111 (998)
|++..+.+.||+|..|+..+++.+...+++....+++..+...+.+++.......+...+.+.||.+
T Consensus 1 ~~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 1 KQKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred CcEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 4567799999999999999999999999999999999999999988766556777777778888864
No 103
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.58 E-value=0.00041 Score=66.50 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=74.2
Q ss_pred EEEEEECCeEEEEEEe-----cCCCcHhHHHHHHHHHhCCCEEEEEcCCC--------HHHHHHHHHHhCcceEEEec--
Q 001896 786 GILVAYDDNLIGVMGI-----ADPVKREAAVVVEGLLKMGVRPVMVTGDN--------WRTAHAVAREIGIQDVMADV-- 850 (998)
Q Consensus 786 ~i~va~~~~~lG~i~l-----~d~~r~~~~~~i~~l~~~gi~~~i~tgd~--------~~~a~~ia~~~gi~~~~~~~-- 850 (998)
.+.+..|+++..-... +-.+.|++.++++.|++.|++++++|+.. ......+.+.+|+...+.-.
T Consensus 2 ~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 81 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACP 81 (132)
T ss_pred EEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 4566777777742111 24678999999999999999999999988 77888899999986332221
Q ss_pred -CcccHHH----HHHHHh-hcCCEEEEEcC-CCCCHHHHhcCCeE
Q 001896 851 -MPAGKAD----AVRSFQ-KDGSIVAMVGD-GINDSPALAAADVG 888 (998)
Q Consensus 851 -~p~~K~~----~v~~l~-~~g~~v~~vGD-g~nD~~al~~A~vg 888 (998)
.++.|.+ +++.++ -..+.++|||| ..+|+.+.+++++-
T Consensus 82 ~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 82 HCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLA 126 (132)
T ss_pred CCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCe
Confidence 1233334 334442 34568999999 69999999999854
No 104
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.58 E-value=0.00022 Score=79.74 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=80.4
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-------CcccHH----HHHHHHhhcCCEEEE
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGKA----DAVRSFQKDGSIVAM 871 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~----~~v~~l~~~g~~v~~ 871 (998)
-.+.||+.++++.|+++|+++.++|+.+...+..+.+.+|+.++|..+ .++.+. ..++.+.-..+.++|
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~ 294 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIV 294 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEE
Confidence 347799999999999999999999999999999999999998655543 112222 244444445678999
Q ss_pred EcCCCCCHHHHhcCCeE-EEecCch-HHHHHhcCEEEecCChhHH
Q 001896 872 VGDGINDSPALAAADVG-MAIGAGT-DIAIEAADYVLMRNSLEDV 914 (998)
Q Consensus 872 vGDg~nD~~al~~A~vg-ia~~~~~-~~~~~~ad~vl~~~~~~~l 914 (998)
|||..+|+.|.++|++- |++.++. ......+|+++ +++..+
T Consensus 295 IGDS~~DIeAAk~AGm~~IgV~~~~~~~~l~~Ad~iI--~s~~EL 337 (381)
T PLN02575 295 FGNSNQTVEAAHDARMKCVAVASKHPIYELGAADLVV--RRLDEL 337 (381)
T ss_pred EcCCHHHHHHHHHcCCEEEEECCCCChhHhcCCCEEE--CCHHHH
Confidence 99999999999999954 3333221 11223578876 666665
No 105
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.55 E-value=0.00037 Score=69.96 Aligned_cols=108 Identities=21% Similarity=0.236 Sum_probs=79.2
Q ss_pred HHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCC-HHHHHHHHHHhCcceEEEecCcccH--
Q 001896 779 LEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDN-WRTAHAVAREIGIQDVMADVMPAGK-- 855 (998)
Q Consensus 779 ~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~-~~~a~~ia~~~gi~~~~~~~~p~~K-- 855 (998)
+.+.+.+.+.+..|+++.-. -...+.|++.++++.|++.|++++++|+.+ ...+..+.+.+|+..+.....|...
T Consensus 20 ~~~~~v~~vv~D~Dgtl~~~--~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~KP~p~~~ 97 (170)
T TIGR01668 20 LKKVGIKGVVLDKDNTLVYP--DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLPHAVKPPGCAF 97 (170)
T ss_pred HHHCCCCEEEEecCCccccC--CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEcCCCCCChHHH
Confidence 34567888888888776532 133678999999999999999999999988 6778888899998654433333322
Q ss_pred HHHHHHHhhcCCEEEEEcCCC-CCHHHHhcCCeE
Q 001896 856 ADAVRSFQKDGSIVAMVGDGI-NDSPALAAADVG 888 (998)
Q Consensus 856 ~~~v~~l~~~g~~v~~vGDg~-nD~~al~~A~vg 888 (998)
..+++.+.-..+.++||||.. .|..+.++|++-
T Consensus 98 ~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~ 131 (170)
T TIGR01668 98 RRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSY 131 (170)
T ss_pred HHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCe
Confidence 122233333356799999998 699999999953
No 106
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.50 E-value=0.00043 Score=81.76 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=48.1
Q ss_pred CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCc
Q 001896 783 ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI 843 (998)
Q Consensus 783 g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi 843 (998)
-.+.++...|++++.- .+...+.+.++|++|+++|+.++++||++...+..+++++|+
T Consensus 415 ~~KLIfsDLDGTLLd~---d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 415 FKKIVYTDLDGTLLNP---LTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGI 472 (694)
T ss_pred eeeEEEEECcCCCcCC---CCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 3456777889988752 223456789999999999999999999999999999999886
No 107
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.48 E-value=0.00095 Score=83.02 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=101.7
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEe--cCCCcHhHHHHHHHHHh-CCCEEEEEcCCCHHHHHHHHHHhCcce---
Q 001896 772 VESFVVELEESARTGILVAYDDNLIGVMGI--ADPVKREAAVVVEGLLK-MGVRPVMVTGDNWRTAHAVAREIGIQD--- 845 (998)
Q Consensus 772 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~l--~d~~r~~~~~~i~~l~~-~gi~~~i~tgd~~~~a~~ia~~~gi~~--- 845 (998)
.+.....+.....+.+++.+||+++....- ...+.+++.++|++|++ .|+.++++||++..........+++.-
T Consensus 480 ~~~~~~~y~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l~liae 559 (726)
T PRK14501 480 AEEIIARYRAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPIHLVAE 559 (726)
T ss_pred HHHHHHHHHhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCeEEEEe
Confidence 455566777777899999999999874221 12467899999999999 599999999999998888776555420
Q ss_pred --------------------------------------------------------------------------------
Q 001896 846 -------------------------------------------------------------------------------- 845 (998)
Q Consensus 846 -------------------------------------------------------------------------------- 845 (998)
T Consensus 560 nG~~i~~~~~~w~~~~~~~~~w~~~v~~il~~~~~~~~gs~ie~k~~~l~~~~r~~d~~~~~~~a~~l~~~l~~~~~~~~ 639 (726)
T PRK14501 560 HGAWSRAPGGEWQLLEPVATEWKDAVRPILEEFVDRTPGSFIEEKEASLAWHYRNADPELGEARANELILALSSLLSNAP 639 (726)
T ss_pred CCEEEeCCCCceEECCCcchhHHHHHHHHHHHHHhcCCCcEEEEcceEEEEEccCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence
Q ss_pred -------EEEecCc--ccHHHHHHHHhhc--CCEEEEEcCCCCCHHHHhcC---CeEEEecCchHHHHHhcCEEEecCCh
Q 001896 846 -------VMADVMP--AGKADAVRSFQKD--GSIVAMVGDGINDSPALAAA---DVGMAIGAGTDIAIEAADYVLMRNSL 911 (998)
Q Consensus 846 -------~~~~~~p--~~K~~~v~~l~~~--g~~v~~vGDg~nD~~al~~A---~vgia~~~~~~~~~~~ad~vl~~~~~ 911 (998)
.+-++.| -+|...++.+.+. ...++++||+.||.+|++.+ +.+|+||++ ...|++.+. +.
T Consensus 640 ~~v~~g~~~veV~p~~vnKG~al~~ll~~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~----~s~A~~~l~--~~ 713 (726)
T PRK14501 640 LEVLRGNKVVEVRPAGVNKGRAVRRLLEAGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG----ESRARYRLP--SQ 713 (726)
T ss_pred eEEEECCeEEEEEECCCCHHHHHHHHHhcCCCCEEEEECCCCChHHHHHhcccCceEEEECCC----CCcceEeCC--CH
Confidence 0011112 1455555555442 24799999999999999986 689999875 457888884 44
Q ss_pred hHHHHHHH
Q 001896 912 EDVIIAID 919 (998)
Q Consensus 912 ~~l~~~i~ 919 (998)
+.+..+++
T Consensus 714 ~eV~~~L~ 721 (726)
T PRK14501 714 REVRELLR 721 (726)
T ss_pred HHHHHHHH
Confidence 66666654
No 108
>PTZ00174 phosphomannomutase; Provisional
Probab=97.48 E-value=0.00079 Score=72.15 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=44.1
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHH
Q 001896 784 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 839 (998)
Q Consensus 784 ~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~ 839 (998)
.+.+++-.||+++. =..++.+..+++|++++++|++++++||++........+
T Consensus 5 ~klia~DlDGTLL~---~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 5 KTILLFDVDGTLTK---PRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CeEEEEECcCCCcC---CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 56778888888873 234688999999999999999999999999988776655
No 109
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.46 E-value=0.00086 Score=64.18 Aligned_cols=110 Identities=20% Similarity=0.271 Sum_probs=91.2
Q ss_pred HHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccH
Q 001896 776 VVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGK 855 (998)
Q Consensus 776 ~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K 855 (998)
.+.+.+.|.+.+.+.-|.+++..= ....-|++++-+..++++|+++.++|..++..+...++.+|++-++....|-.+
T Consensus 20 ~~~L~~~Gikgvi~DlDNTLv~wd--~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~ 97 (175)
T COG2179 20 PDILKAHGIKGVILDLDNTLVPWD--NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGR 97 (175)
T ss_pred HHHHHHcCCcEEEEeccCceeccc--CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHH
Confidence 456788999999999999988753 345569999999999999999999999999999999999999888887777665
Q ss_pred H--HHHHHHhhcCCEEEEEcCC-CCCHHHHhcCCe
Q 001896 856 A--DAVRSFQKDGSIVAMVGDG-INDSPALAAADV 887 (998)
Q Consensus 856 ~--~~v~~l~~~g~~v~~vGDg-~nD~~al~~A~v 887 (998)
. +.++.++-..+.|+||||. ..|+.+-..+++
T Consensus 98 ~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~ 132 (175)
T COG2179 98 AFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGM 132 (175)
T ss_pred HHHHHHHHcCCChhHEEEEcchhhhhhhcccccCc
Confidence 3 4555565567889999999 458887777764
No 110
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.46 E-value=0.0003 Score=74.10 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=67.4
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-----C--cccHHH----HHHHHhhcCCEEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----M--PAGKAD----AVRSFQKDGSIVAMV 872 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-----~--p~~K~~----~v~~l~~~g~~v~~v 872 (998)
++.|++.++++.|++.|++++++|+-+...+....+.+|+..+|..+ . ++.+.+ +.+.+.-..+.++||
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~i 173 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMV 173 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEE
Confidence 57899999999999999999999999888888889999997655432 1 112222 333333334679999
Q ss_pred cCCC-CCHHHHhcCCeE-EEec
Q 001896 873 GDGI-NDSPALAAADVG-MAIG 892 (998)
Q Consensus 873 GDg~-nD~~al~~A~vg-ia~~ 892 (998)
||.. +|+.+.++|++- |.+.
T Consensus 174 gDs~~~di~~A~~aG~~~i~~~ 195 (221)
T TIGR02253 174 GDRLDKDIKGAKNLGMKTVWIN 195 (221)
T ss_pred CCChHHHHHHHHHCCCEEEEEC
Confidence 9998 999999999954 4443
No 111
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.45 E-value=0.00038 Score=73.11 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=65.1
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCC----HHHHHHHHHHhCc--ceEEEec----Cc--ccHHHHHHHHhhcCCEEE
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDN----WRTAHAVAREIGI--QDVMADV----MP--AGKADAVRSFQKDGSIVA 870 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~----~~~a~~ia~~~gi--~~~~~~~----~p--~~K~~~v~~l~~~g~~v~ 870 (998)
-.+.+++++.++.|++.|+++.++||++ ..++..+.+.+|+ ++.+..+ ++ .+|.. .+++.+ .++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~---~l~~~~-i~I 188 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQ---WLKKKN-IRI 188 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHH---HHHhcC-CeE
Confidence 4477889999999999999999999964 6688999999999 5433222 11 34544 444444 489
Q ss_pred EEcCCCCCHHHHhcCC---eEEEec
Q 001896 871 MVGDGINDSPALAAAD---VGMAIG 892 (998)
Q Consensus 871 ~vGDg~nD~~al~~A~---vgia~~ 892 (998)
|+||..+|..+.++|+ +++..|
T Consensus 189 ~IGDs~~Di~aA~~AGi~~I~v~~G 213 (237)
T PRK11009 189 FYGDSDNDITAAREAGARGIRILRA 213 (237)
T ss_pred EEcCCHHHHHHHHHcCCcEEEEecC
Confidence 9999999999999999 445555
No 112
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.43 E-value=0.00087 Score=70.56 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=44.2
Q ss_pred EEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc
Q 001896 788 LVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 844 (998)
Q Consensus 788 ~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~ 844 (998)
++-.||+++- .+...+++.++|++|+++|++++++||++...+..+.+++|+.
T Consensus 3 ~~DlDGTLl~----~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 3 FTDLDGTLLP----PGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred EEeCCCCCcC----CCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 4445666654 3556678999999999999999999999999999999999973
No 113
>PRK11590 hypothetical protein; Provisional
Probab=97.43 E-value=0.00081 Score=70.18 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=73.1
Q ss_pred CCcHhHHHHH-HHHHhCCCEEEEEcCCCHHHHHHHHHHhCc---ceEEE--------------ecCcccHHHHHHHH-hh
Q 001896 804 PVKREAAVVV-EGLLKMGVRPVMVTGDNWRTAHAVAREIGI---QDVMA--------------DVMPAGKADAVRSF-QK 864 (998)
Q Consensus 804 ~~r~~~~~~i-~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi---~~~~~--------------~~~p~~K~~~v~~l-~~ 864 (998)
.++|++.+.| +.+++.|++++++|+.....+..+++.+|+ +++.+ .+..++|...++.. ..
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~~ 174 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIGT 174 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHhCC
Confidence 4589999999 578889999999999999999999999994 43322 13456788766654 33
Q ss_pred cCCEEEEEcCCCCCHHHHhcCCeEEEecCc
Q 001896 865 DGSIVAMVGDGINDSPALAAADVGMAIGAG 894 (998)
Q Consensus 865 ~g~~v~~vGDg~nD~~al~~A~vgia~~~~ 894 (998)
......+-||+.||.|+|+.|+.+++++..
T Consensus 175 ~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~ 204 (211)
T PRK11590 175 PLRLYSGYSDSKQDNPLLYFCQHRWRVTPR 204 (211)
T ss_pred CcceEEEecCCcccHHHHHhCCCCEEECcc
Confidence 445667899999999999999999999754
No 114
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.40 E-value=0.00079 Score=68.46 Aligned_cols=114 Identities=25% Similarity=0.241 Sum_probs=71.9
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCH---------------HHHHHHHHHhCc--ceEEEec--------CcccHH--
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNW---------------RTAHAVAREIGI--QDVMADV--------MPAGKA-- 856 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~---------------~~a~~ia~~~gi--~~~~~~~--------~p~~K~-- 856 (998)
.+.|++.+++++|++.|+++.++|+.+. .....+.+.+|+ +.++... ..+.+.
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~~~~~~~~~~KP~p~~ 108 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPHHPEDGCDCRKPKPGM 108 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcCCCCCHHH
Confidence 3579999999999999999999998762 122334455665 3444211 011122
Q ss_pred --HHHHHHhhcCCEEEEEcCCCCCHHHHhcCCeE---EEecCchH-HHHHhc--CEEEecCChhHHHHHHH
Q 001896 857 --DAVRSFQKDGSIVAMVGDGINDSPALAAADVG---MAIGAGTD-IAIEAA--DYVLMRNSLEDVIIAID 919 (998)
Q Consensus 857 --~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vg---ia~~~~~~-~~~~~a--d~vl~~~~~~~l~~~i~ 919 (998)
.+++.+.-..+.++||||+.+|+.+.++|++. +..|.... .....+ |+++ +++..+..++.
T Consensus 109 ~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii--~~l~el~~~l~ 177 (181)
T PRK08942 109 LLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVL--DSLADLPQALK 177 (181)
T ss_pred HHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceee--cCHHHHHHHHH
Confidence 33444444457899999999999999999954 32232222 222235 7776 66777776654
No 115
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.36 E-value=0.00032 Score=72.43 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=64.2
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec--------Cccc--HHHHHHHHhhcCCEEEE
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV--------MPAG--KADAVRSFQKDGSIVAM 871 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~--------~p~~--K~~~v~~l~~~g~~v~~ 871 (998)
.+++.+++.++++.|++.|+++.++||.+...+..+.+.+|+..+|..+ .|+. -..+++.+....+.++|
T Consensus 104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~ 183 (197)
T TIGR01548 104 EDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAM 183 (197)
T ss_pred ccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence 3446667799999999999999999999999999999999997655322 1211 12344445445668999
Q ss_pred EcCCCCCHHHHhcC
Q 001896 872 VGDGINDSPALAAA 885 (998)
Q Consensus 872 vGDg~nD~~al~~A 885 (998)
|||+.+|+.+.++|
T Consensus 184 vGD~~~Di~aA~~a 197 (197)
T TIGR01548 184 VGDTVDDIITGRKA 197 (197)
T ss_pred EeCCHHHHHHHHhC
Confidence 99999999987764
No 116
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.35 E-value=0.001 Score=69.21 Aligned_cols=90 Identities=14% Similarity=0.082 Sum_probs=71.0
Q ss_pred CCcHhHHHHHH-HHHhCCCEEEEEcCCCHHHHHHHHHHhCc---ceEEE-e-------------cCcccHHHHHHHH-hh
Q 001896 804 PVKREAAVVVE-GLLKMGVRPVMVTGDNWRTAHAVAREIGI---QDVMA-D-------------VMPAGKADAVRSF-QK 864 (998)
Q Consensus 804 ~~r~~~~~~i~-~l~~~gi~~~i~tgd~~~~a~~ia~~~gi---~~~~~-~-------------~~p~~K~~~v~~l-~~ 864 (998)
.++|++.+.|+ .++++|++++++|+.+...+..+++..|+ +++.+ + +..++|...++.. ..
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~~ 173 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKIGS 173 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHhCC
Confidence 46899999996 78989999999999999999999988544 43322 1 3346787766644 32
Q ss_pred cCCEEEEEcCCCCCHHHHhcCCeEEEecC
Q 001896 865 DGSIVAMVGDGINDSPALAAADVGMAIGA 893 (998)
Q Consensus 865 ~g~~v~~vGDg~nD~~al~~A~vgia~~~ 893 (998)
......+-||+.||.|||+.||.+++++.
T Consensus 174 ~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp 202 (210)
T TIGR01545 174 PLKLYSGYSDSKQDNPLLAFCEHRWRVSK 202 (210)
T ss_pred ChhheEEecCCcccHHHHHhCCCcEEECc
Confidence 33456799999999999999999999964
No 117
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.34 E-value=0.00031 Score=73.99 Aligned_cols=86 Identities=12% Similarity=0.129 Sum_probs=66.5
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-----C--cccHHHHHHH----HhhcCCEEEE
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----M--PAGKADAVRS----FQKDGSIVAM 871 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-----~--p~~K~~~v~~----l~~~g~~v~~ 871 (998)
-.+.|++.++++.|+++|+++.++|+.+...+....+.+|+.++|..+ . ++.+.++.+. +.-..+.++|
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 171 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLF 171 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEE
Confidence 467899999999999999999999999988988888989986433211 1 2233444433 3333567999
Q ss_pred EcCCCCCHHHHhcCCeE
Q 001896 872 VGDGINDSPALAAADVG 888 (998)
Q Consensus 872 vGDg~nD~~al~~A~vg 888 (998)
|||..+|+.+.++|++.
T Consensus 172 igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 172 IDDSEPILDAAAQFGIR 188 (224)
T ss_pred EcCCHHHHHHHHHcCCe
Confidence 99999999999999985
No 118
>PRK11587 putative phosphatase; Provisional
Probab=97.31 E-value=0.00087 Score=70.43 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=73.9
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce---EEEe-cC--cccHHH----HHHHHhhcCCEEEEEc
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD---VMAD-VM--PAGKAD----AVRSFQKDGSIVAMVG 873 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~---~~~~-~~--p~~K~~----~v~~l~~~g~~v~~vG 873 (998)
++.|++.++++.|+++|+++.++|+.+...+....+..|+.. +.+. -. ++.+++ ..+.+.-..+.++|||
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~ig 162 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVE 162 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEEe
Confidence 578999999999999999999999988777777777788742 2211 11 111222 3333444457899999
Q ss_pred CCCCCHHHHhcCCeE-EEecCch-HHHHHhcCEEEecCChhHH
Q 001896 874 DGINDSPALAAADVG-MAIGAGT-DIAIEAADYVLMRNSLEDV 914 (998)
Q Consensus 874 Dg~nD~~al~~A~vg-ia~~~~~-~~~~~~ad~vl~~~~~~~l 914 (998)
|..+|+.+.++|++. |++..+. ......+|+++ +++..+
T Consensus 163 Ds~~di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~--~~~~el 203 (218)
T PRK11587 163 DAPAGVLSGLAAGCHVIAVNAPADTPRLDEVDLVL--HSLEQL 203 (218)
T ss_pred cchhhhHHHHHCCCEEEEECCCCchhhhccCCEEe--cchhhe
Confidence 999999999999964 5554322 22334577776 445543
No 119
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.29 E-value=0.00085 Score=69.70 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=44.4
Q ss_pred EEEEECCeEEEEEEec-CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCc
Q 001896 787 ILVAYDDNLIGVMGIA-DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI 843 (998)
Q Consensus 787 i~va~~~~~lG~i~l~-d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi 843 (998)
+++.+|++++.- . -++.+.+.++|++|++.|++++++||+....+..+.+.++.
T Consensus 2 i~~D~DgTL~~~---~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~ 56 (204)
T TIGR01484 2 LFFDLDGTLLDP---NAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLPL 56 (204)
T ss_pred EEEeCcCCCcCC---CCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCCC
Confidence 455677877751 2 25789999999999999999999999999999999887553
No 120
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.28 E-value=0.00059 Score=74.72 Aligned_cols=109 Identities=24% Similarity=0.305 Sum_probs=73.0
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc------eEEE-ecCcccH--HH----HHHHHhhcCCEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ------DVMA-DVMPAGK--AD----AVRSFQKDGSIVA 870 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~------~~~~-~~~p~~K--~~----~v~~l~~~g~~v~ 870 (998)
++.|++.++++.|++.|+++.++|+.+......+.+..+.. .++. ...+..| .+ +++.+.-..+.++
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 223 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRCV 223 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHEE
Confidence 57899999999999999999999999988888777765321 1221 1111123 33 3344443456799
Q ss_pred EEcCCCCCHHHHhcCCeE---EEecCchHHHHHhcCEEEecCChhHH
Q 001896 871 MVGDGINDSPALAAADVG---MAIGAGTDIAIEAADYVLMRNSLEDV 914 (998)
Q Consensus 871 ~vGDg~nD~~al~~A~vg---ia~~~~~~~~~~~ad~vl~~~~~~~l 914 (998)
||||+.+|+.|.++|++. +..|.........+|+++ +++..+
T Consensus 224 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi--~~~~~l 268 (286)
T PLN02779 224 VVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVF--DCLGDV 268 (286)
T ss_pred EEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEE--CChhhc
Confidence 999999999999999955 333422222224578887 444443
No 121
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.24 E-value=0.0013 Score=53.06 Aligned_cols=64 Identities=34% Similarity=0.510 Sum_probs=57.1
Q ss_pred eeeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCce
Q 001896 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193 (998)
Q Consensus 130 ~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~ 193 (998)
..+.++|+.|..|+..+++.+...+++....+++..+...+.|++...+...+...+++.||.+
T Consensus 4 ~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 4 FTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 4588999999999999999999999999999999999999999887667888877788888864
No 122
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.23 E-value=0.00067 Score=75.16 Aligned_cols=88 Identities=11% Similarity=0.024 Sum_probs=69.1
Q ss_pred ecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce-EEEec------------------CcccHHHHHHH
Q 001896 801 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-VMADV------------------MPAGKADAVRS 861 (998)
Q Consensus 801 l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~-~~~~~------------------~p~~K~~~v~~ 861 (998)
..+++.+++.++++.|++.|++++++||.+...+..+.+.+|+.. +|..+ .|+-+...++.
T Consensus 184 ~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~ 263 (300)
T PHA02530 184 KEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWE 263 (300)
T ss_pred ccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999875 32211 11223334444
Q ss_pred Hhh-cCCEEEEEcCCCCCHHHHhcCCeE
Q 001896 862 FQK-DGSIVAMVGDGINDSPALAAADVG 888 (998)
Q Consensus 862 l~~-~g~~v~~vGDg~nD~~al~~A~vg 888 (998)
+.. ..+.++||||..+|+.+.++|++.
T Consensus 264 ~~~~~~~~~~~vgD~~~d~~~a~~~Gi~ 291 (300)
T PHA02530 264 KIAPKYDVLLAVDDRDQVVDMWRRIGLE 291 (300)
T ss_pred HhccCceEEEEEcCcHHHHHHHHHhCCe
Confidence 333 346799999999999999999965
No 123
>PRK09449 dUMP phosphatase; Provisional
Probab=97.21 E-value=0.00085 Score=70.83 Aligned_cols=112 Identities=18% Similarity=0.171 Sum_probs=76.3
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-----C--cccHHHHH----HHHhhc-CCEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----M--PAGKADAV----RSFQKD-GSIVAM 871 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-----~--p~~K~~~v----~~l~~~-g~~v~~ 871 (998)
++.|++.++++.|+ .|+++.++|+.....+....+++|+.++|..+ . ++.+.++. +.+.-. .+.++|
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~ 173 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLM 173 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 47899999999999 58999999999999888888999986533322 1 22233333 333222 257999
Q ss_pred EcCCC-CCHHHHhcCCeE-EEecC-chH-HHHHhcCEEEecCChhHHHHHH
Q 001896 872 VGDGI-NDSPALAAADVG-MAIGA-GTD-IAIEAADYVLMRNSLEDVIIAI 918 (998)
Q Consensus 872 vGDg~-nD~~al~~A~vg-ia~~~-~~~-~~~~~ad~vl~~~~~~~l~~~i 918 (998)
|||+. +|+.+.++|++- |.+.. +.. .....+|+++ +++..+..++
T Consensus 174 vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i--~~~~el~~~l 222 (224)
T PRK09449 174 VGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQV--SSLSELEQLL 222 (224)
T ss_pred EcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEE--CCHHHHHHHH
Confidence 99998 699999999975 44331 211 1112467776 6677777654
No 124
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.21 E-value=0.00066 Score=71.60 Aligned_cols=111 Identities=20% Similarity=0.197 Sum_probs=77.0
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecC-------cccHHH----HHHHH-hhcCCEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM-------PAGKAD----AVRSF-QKDGSIVAM 871 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~-------p~~K~~----~v~~l-~~~g~~v~~ 871 (998)
++.|++.++++.|++. ++++++|+........+.+++|+..+|..+. ++.+.+ +++.+ .-..+.++|
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~ 175 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLM 175 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEE
Confidence 5789999999999999 9999999999999999999999975444331 122233 33333 323467999
Q ss_pred EcCCC-CCHHHHhcCCe---EEEecCchHHHHHhcCEEEecCChhHHHHH
Q 001896 872 VGDGI-NDSPALAAADV---GMAIGAGTDIAIEAADYVLMRNSLEDVIIA 917 (998)
Q Consensus 872 vGDg~-nD~~al~~A~v---gia~~~~~~~~~~~ad~vl~~~~~~~l~~~ 917 (998)
|||+. +|+.+-+.+++ ++..+.........+|.++ +++..+..+
T Consensus 176 igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~--~~~~el~~~ 223 (224)
T TIGR02254 176 IGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEI--RSLEELYEI 223 (224)
T ss_pred ECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEE--CCHHHHHhh
Confidence 99998 89999999995 3333322222223456666 667776654
No 125
>PLN02940 riboflavin kinase
Probab=97.19 E-value=0.00062 Score=77.58 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=74.2
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHH-HhCcceEEEec-------CcccHHH----HHHHHhhcCCEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR-EIGIQDVMADV-------MPAGKAD----AVRSFQKDGSIVAM 871 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~-~~gi~~~~~~~-------~p~~K~~----~v~~l~~~g~~v~~ 871 (998)
.+.|++.++++.|++.|+++.|+|+.....+....+ ..|+.++|..+ .++.+.+ +++.+.-..+.++|
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~ 172 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLV 172 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 567999999999999999999999999888887765 67875433322 1122222 33344434578999
Q ss_pred EcCCCCCHHHHhcCCeE-EEe--cCchHHHHHhcCEEEecCChhH
Q 001896 872 VGDGINDSPALAAADVG-MAI--GAGTDIAIEAADYVLMRNSLED 913 (998)
Q Consensus 872 vGDg~nD~~al~~A~vg-ia~--~~~~~~~~~~ad~vl~~~~~~~ 913 (998)
|||+.+|+.+.++|++. |.+ +.........+|.++ +++..
T Consensus 173 VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i--~sl~e 215 (382)
T PLN02940 173 IEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVI--NSLLD 215 (382)
T ss_pred EeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEe--CCHhH
Confidence 99999999999999955 333 322233334566665 44544
No 126
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.17 E-value=0.00093 Score=69.03 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=66.4
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-----C--cccHHH----HHHHHhhcCCEEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----M--PAGKAD----AVRSFQKDGSIVAMV 872 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-----~--p~~K~~----~v~~l~~~g~~v~~v 872 (998)
++.|++.++++.|+++|++++++|+-+........+.+|+.++|..+ . ++.+.+ +.+.+.-..+.++||
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~v 171 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFV 171 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEE
Confidence 57899999999999999999999999999999999999986544322 1 112222 333444445779999
Q ss_pred cCCCCCHHHHhcCCeE
Q 001896 873 GDGINDSPALAAADVG 888 (998)
Q Consensus 873 GDg~nD~~al~~A~vg 888 (998)
||+.+|+.+.++|++-
T Consensus 172 gD~~~Di~~A~~~G~~ 187 (198)
T TIGR01428 172 ASNPWDLGGAKKFGFK 187 (198)
T ss_pred eCCHHHHHHHHHCCCc
Confidence 9999999999999865
No 127
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.13 E-value=0.0012 Score=65.99 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=69.8
Q ss_pred EEecCCCcHhHHHHHHHHHhCCCEEEEEcCC-CHHHHHHHHHHhCcc---------eEEEec----Cc-ccH--HHHHHH
Q 001896 799 MGIADPVKREAAVVVEGLLKMGVRPVMVTGD-NWRTAHAVAREIGIQ---------DVMADV----MP-AGK--ADAVRS 861 (998)
Q Consensus 799 i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd-~~~~a~~ia~~~gi~---------~~~~~~----~p-~~K--~~~v~~ 861 (998)
..-+-+++|++.++++.|+++|+++.++|+. ....+..+.+.+|+. ++|... .| ..| ..+.+.
T Consensus 40 ~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~ 119 (174)
T TIGR01685 40 SGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQK 119 (174)
T ss_pred CCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHH
Confidence 3335567899999999999999999999976 888999999999986 544332 22 122 234555
Q ss_pred Hhhc------CCEEEEEcCCCCCHHHHhcCCeEEEe
Q 001896 862 FQKD------GSIVAMVGDGINDSPALAAADVGMAI 891 (998)
Q Consensus 862 l~~~------g~~v~~vGDg~nD~~al~~A~vgia~ 891 (998)
+.+. .+.++||||...|+.+.++|++-...
T Consensus 120 ~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~ 155 (174)
T TIGR01685 120 VNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCY 155 (174)
T ss_pred hhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEE
Confidence 5432 46799999999999999999965443
No 128
>PLN02957 copper, zinc superoxide dismutase
Probab=97.06 E-value=0.0022 Score=67.82 Aligned_cols=67 Identities=24% Similarity=0.369 Sum_probs=58.6
Q ss_pred eEEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchhccc
Q 001896 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAE 116 (998)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 116 (998)
+++.+.+ +|+|.+|+.++++.+++.+||..+.+++..+++.+.++ ...+++.+.+++.||.+++...
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~~ 72 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIGQ 72 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEecC
Confidence 4566888 79999999999999999999999999999999999873 4678899999999999876544
No 129
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0014 Score=63.34 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=72.4
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhC----cceEEE--------------------ecCcccHHHHH
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIG----IQDVMA--------------------DVMPAGKADAV 859 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~g----i~~~~~--------------------~~~p~~K~~~v 859 (998)
.++|+-++.++.+++++++++++|+........+-+.++ |..+.. ..-..+|...|
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~vI 152 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSVI 152 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcchhH
Confidence 578999999999999999999999999999999988877 431100 11234799999
Q ss_pred HHHhhcCCEEEEEcCCCCCHHHHhcCCeEEEe
Q 001896 860 RSFQKDGSIVAMVGDGINDSPALAAADVGMAI 891 (998)
Q Consensus 860 ~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~ 891 (998)
+.+++..+.+.|+|||+.|.+|.+.+|+-.|-
T Consensus 153 ~~l~e~~e~~fy~GDsvsDlsaaklsDllFAK 184 (220)
T COG4359 153 HELSEPNESIFYCGDSVSDLSAAKLSDLLFAK 184 (220)
T ss_pred HHhhcCCceEEEecCCcccccHhhhhhhHhhH
Confidence 99999999999999999999998877765543
No 130
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.00 E-value=0.00082 Score=68.51 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=62.6
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-------CcccHHHHHHH----HhhcCCEEEE
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGKADAVRS----FQKDGSIVAM 871 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~~v~~----l~~~g~~v~~ 871 (998)
-.+.|++.++++.|++.|+++.++|+. ..+..+.+.+|+.++|..+ .+..+.++++. +....+.++|
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 164 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECVV 164 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 468999999999999999999999987 6678888889986543322 12223333332 2223467999
Q ss_pred EcCCCCCHHHHhcCCeE
Q 001896 872 VGDGINDSPALAAADVG 888 (998)
Q Consensus 872 vGDg~nD~~al~~A~vg 888 (998)
|||+.+|+.+.++|++.
T Consensus 165 IgD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 165 FEDALAGVQAARAAGMF 181 (185)
T ss_pred EeCcHhhHHHHHHCCCe
Confidence 99999999999999875
No 131
>PLN02580 trehalose-phosphatase
Probab=96.99 E-value=0.007 Score=67.78 Aligned_cols=60 Identities=12% Similarity=0.279 Sum_probs=44.4
Q ss_pred HHHHHcCCeEEEEEECCeEEEEEEecC--CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHH
Q 001896 777 VELEESARTGILVAYDDNLIGVMGIAD--PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAV 837 (998)
Q Consensus 777 ~~~~~~g~~~i~va~~~~~lG~i~l~d--~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~i 837 (998)
..+.+.....+++-|||++.-+..--| .+.++++++++.|.+. ..++|+||++.....+.
T Consensus 112 ~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~ 173 (384)
T PLN02580 112 ANFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYEL 173 (384)
T ss_pred HHHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHH
Confidence 345566677889999999987653212 2458899999999887 47999999986665444
No 132
>PLN02811 hydrolase
Probab=96.98 E-value=0.00088 Score=70.48 Aligned_cols=86 Identities=23% Similarity=0.258 Sum_probs=57.4
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHH-HHHHHhCcce----EEEec---CcccH--HH----HHHHHh---hc
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH-AVAREIGIQD----VMADV---MPAGK--AD----AVRSFQ---KD 865 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~-~ia~~~gi~~----~~~~~---~p~~K--~~----~v~~l~---~~ 865 (998)
-++.|++.++|+.|++.|+++.++||....... ...+..++.+ +++.- ....| .+ .++.+. -.
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 457899999999999999999999998765333 3333334433 22211 01112 22 333332 22
Q ss_pred CCEEEEEcCCCCCHHHHhcCCeE
Q 001896 866 GSIVAMVGDGINDSPALAAADVG 888 (998)
Q Consensus 866 g~~v~~vGDg~nD~~al~~A~vg 888 (998)
.+.++||||+..|+.|.++|++.
T Consensus 157 ~~~~v~IgDs~~di~aA~~aG~~ 179 (220)
T PLN02811 157 PGKVLVFEDAPSGVEAAKNAGMS 179 (220)
T ss_pred ccceEEEeccHhhHHHHHHCCCe
Confidence 46799999999999999999954
No 133
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.97 E-value=0.0022 Score=64.80 Aligned_cols=109 Identities=27% Similarity=0.217 Sum_probs=68.2
Q ss_pred CcHhHHHHHHHHHhCCCEEEEEcCCCH---------------HHHHHHHHHhCcc--eEEEec--------------Ccc
Q 001896 805 VKREAAVVVEGLLKMGVRPVMVTGDNW---------------RTAHAVAREIGIQ--DVMADV--------------MPA 853 (998)
Q Consensus 805 ~r~~~~~~i~~l~~~gi~~~i~tgd~~---------------~~a~~ia~~~gi~--~~~~~~--------------~p~ 853 (998)
+.|++.++|+.|+++|++++++|+.+. .....+..+.|+. .++... ..+
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~K 106 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEGVEEFRQVCDCRK 106 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCcccccccCCCCCCC
Confidence 468999999999999999999998764 1222344444443 333210 012
Q ss_pred cHHHHHHH----HhhcCCEEEEEcCCCCCHHHHhcCCeEE--Ee--cCch-HHHHHhcCEEEecCChhHHH
Q 001896 854 GKADAVRS----FQKDGSIVAMVGDGINDSPALAAADVGM--AI--GAGT-DIAIEAADYVLMRNSLEDVI 915 (998)
Q Consensus 854 ~K~~~v~~----l~~~g~~v~~vGDg~nD~~al~~A~vgi--a~--~~~~-~~~~~~ad~vl~~~~~~~l~ 915 (998)
.+..++.. +.-..+.++||||..+|+.+.++|++.. .+ |... ......+|+++ +++..|+
T Consensus 107 P~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i--~~~~el~ 175 (176)
T TIGR00213 107 PKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVL--NSLADLP 175 (176)
T ss_pred CCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEe--ccHHHhh
Confidence 23433333 3333567999999999999999999742 33 3221 11223488888 5566553
No 134
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0077 Score=68.82 Aligned_cols=147 Identities=18% Similarity=0.365 Sum_probs=116.1
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc-----------------------------
Q 001896 794 NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----------------------------- 844 (998)
Q Consensus 794 ~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~----------------------------- 844 (998)
.|.|++.+..+.+++....|+.|-++-++.+-.|-.+....+-.|+++||.
T Consensus 816 If~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELkSkVFAEKlGiEaGWNCHISLa~~~d~Pg~e~~pa~~q~a~ 895 (1354)
T KOG4383|consen 816 IFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELKSKVFAEKLGIEAGWNCHISLAEEEDAPGREAGPAHEQFAA 895 (1354)
T ss_pred hhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHHHHHHHHHhccccccceeEEeccCCCCCcccCCCCChhhhc
Confidence 689999999999999999999999999999999999999999999999996
Q ss_pred --------------------------------------------------------------------------eEEEec
Q 001896 845 --------------------------------------------------------------------------DVMADV 850 (998)
Q Consensus 845 --------------------------------------------------------------------------~~~~~~ 850 (998)
..|.+.
T Consensus 896 qkpSlhddlnqia~ddaeg~lL~~Eeg~~dliSfq~~dsdi~kf~ed~N~AkLPrGihnVRPHL~~iDNVPLLV~LFTDc 975 (1354)
T KOG4383|consen 896 QKPSLHDDLNQIALDDAEGELLDCEEGARDLISFQKMDSDIAKFAEDPNIAKLPRGIHNVRPHLDEIDNVPLLVGLFTDC 975 (1354)
T ss_pred cCcchhHHHHHhhhcccccceeehhhcccCCccccccccchhhhcCCCchhhcCcchhhcCcccccccCcceeeeeccCC
Confidence 167778
Q ss_pred CcccHHHHHHHHhhcCCEEEEEcCCCCC--HHHHhcCCeEEEecC-------------chHH-HHHhcC-----------
Q 001896 851 MPAGKADAVRSFQKDGSIVAMVGDGIND--SPALAAADVGMAIGA-------------GTDI-AIEAAD----------- 903 (998)
Q Consensus 851 ~p~~K~~~v~~l~~~g~~v~~vGDg~nD--~~al~~A~vgia~~~-------------~~~~-~~~~ad----------- 903 (998)
+|+.--+.|+-+|++|+.++.+|...|- .-.+-+||++|++-. ++.. ..++.|
T Consensus 976 npeamcEMIeIMQE~GEVtcclGS~aN~rNSciflkadISialD~l~~~~C~~e~fg~assismaqandglsplQiSgqL 1055 (1354)
T KOG4383|consen 976 NPEAMCEMIEIMQENGEVTCCLGSCANARNSCIFLKADISIALDDLEEPACRLEDFGVASSISMAQANDGLSPLQISGQL 1055 (1354)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccccccccceEEEccceeEEeccCCCccceecccccchhhhhhhhcCCCCceeecccc
Confidence 8998899999999999999999999873 334577999999842 1111 112223
Q ss_pred ------EEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001896 904 ------YVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 940 (998)
Q Consensus 904 ------~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~ 940 (998)
+-+....+-.+..+|.-+|.....+|..+.|.+-..+
T Consensus 1056 naL~c~~~f~~ee~ikiirLIe~ARHa~~g~R~cfLFiLq~qL 1098 (1354)
T KOG4383|consen 1056 NALACDFRFDHEELIKIIRLIECARHAMSGFRHCFLFILQAQL 1098 (1354)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2222223445677888899999999999888765444
No 135
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0026 Score=62.15 Aligned_cols=64 Identities=31% Similarity=0.533 Sum_probs=55.3
Q ss_pred eEEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchh
Q 001896 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (998)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (998)
-+.+|.| .|+|.+|+..+++.|+..+|+.++++++..+.+.|. +...+.++...++..|-++.+
T Consensus 7 ~~~efaV-~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~---ts~p~s~i~~~le~tGr~Avl 70 (247)
T KOG4656|consen 7 YEAEFAV-QMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVE---TSVPPSEIQNTLENTGRDAVL 70 (247)
T ss_pred eeEEEEE-echhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEE---ccCChHHHHHHHHhhChheEE
Confidence 4456666 499999999999999999999999999999999885 346789999999999987754
No 136
>PLN02957 copper, zinc superoxide dismutase
Probab=96.92 E-value=0.0031 Score=66.72 Aligned_cols=67 Identities=25% Similarity=0.457 Sum_probs=59.0
Q ss_pred eeeeeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeecc
Q 001896 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQS 198 (998)
Q Consensus 128 ~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~~~ 198 (998)
.++.+.+ +|.|.+|+.++++.+++++||..+.+++..+++.+.|+ ...+++.+.+++.||.+.+...
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~~ 72 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIGQ 72 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEecC
Confidence 3456788 79999999999999999999999999999999999983 4688899999999999877554
No 137
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.92 E-value=0.0012 Score=67.34 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=61.6
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-------CcccHHHHHHHH-hh---cCCEEEE
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGKADAVRSF-QK---DGSIVAM 871 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~~v~~l-~~---~g~~v~~ 871 (998)
.++.|++.++|+.|+++|+++.++|+... +....+.+|+..+|..+ .++.+.++.+.. ++ ..+.++|
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~ 163 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIG 163 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 36789999999999999999999997543 45678889987544432 123344443332 22 3456999
Q ss_pred EcCCCCCHHHHhcCCeE
Q 001896 872 VGDGINDSPALAAADVG 888 (998)
Q Consensus 872 vGDg~nD~~al~~A~vg 888 (998)
|||+.+|+.+.++|++-
T Consensus 164 vgD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 164 IEDAQAGIEAIKAAGMF 180 (185)
T ss_pred EecCHHHHHHHHHcCCE
Confidence 99999999999999964
No 138
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.82 E-value=0.0069 Score=60.38 Aligned_cols=106 Identities=12% Similarity=0.044 Sum_probs=71.0
Q ss_pred CeEEEEEECCeEEEEEEe----cCC-----CcHhHHHHHHHHHhCCCEEEEEcCCCHH------------HHHHHHHHhC
Q 001896 784 RTGILVAYDDNLIGVMGI----ADP-----VKREAAVVVEGLLKMGVRPVMVTGDNWR------------TAHAVAREIG 842 (998)
Q Consensus 784 ~~~i~va~~~~~lG~i~l----~d~-----~r~~~~~~i~~l~~~gi~~~i~tgd~~~------------~a~~ia~~~g 842 (998)
.+.+++-+|++++-...- .++ +.|++.++++.|+++|+++.++|+.+.. .+..+.+.+|
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~g 92 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLK 92 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcC
Confidence 356777888888754321 111 4599999999999999999999986542 4677889999
Q ss_pred cceEEE---ec--CcccHHHHHHH-Hhh-----cCCEEEEEcCCC--------CCHHHHhcCCeEE
Q 001896 843 IQDVMA---DV--MPAGKADAVRS-FQK-----DGSIVAMVGDGI--------NDSPALAAADVGM 889 (998)
Q Consensus 843 i~~~~~---~~--~p~~K~~~v~~-l~~-----~g~~v~~vGDg~--------nD~~al~~A~vgi 889 (998)
+...+. .- .++.+.+.++. +++ ..+.++||||.. +|+.+.++|++-.
T Consensus 93 l~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 93 VPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred CCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCc
Confidence 864111 10 11222333333 222 236799999986 6999999988653
No 139
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.79 E-value=0.0025 Score=64.77 Aligned_cols=84 Identities=20% Similarity=0.257 Sum_probs=61.9
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-----CcccH--HH----HHHHHhhcCCEEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----MPAGK--AD----AVRSFQKDGSIVAMV 872 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-----~p~~K--~~----~v~~l~~~g~~v~~v 872 (998)
++.|++.+.++.|++.|++++++|+..... ..+..++|+.+.|..+ ....| .. +.+.+......++||
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 163 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFV 163 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEE
Confidence 678999999999999999999999988777 6666668986433221 11122 33 333333346789999
Q ss_pred cCCCCCHHHHhcCCeE
Q 001896 873 GDGINDSPALAAADVG 888 (998)
Q Consensus 873 GDg~nD~~al~~A~vg 888 (998)
||...|+.+.+++++-
T Consensus 164 gD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 164 DDSPAGIEAAKAAGMH 179 (183)
T ss_pred cCCHHHHHHHHHcCCE
Confidence 9999999999998863
No 140
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.78 E-value=0.0037 Score=69.73 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=83.6
Q ss_pred eEEEEEECCeEEEEEEecC--------CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHH----hCcceEEEe--c
Q 001896 785 TGILVAYDDNLIGVMGIAD--------PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE----IGIQDVMAD--V 850 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d--------~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~----~gi~~~~~~--~ 850 (998)
+++.+-.|+++-|-+.-+| ++.+++.++|+.|+++|+.+.++|..+...+..+.++ +|+.++|.. .
T Consensus 4 k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~ 83 (320)
T TIGR01686 4 KVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSI 83 (320)
T ss_pred EEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEE
Confidence 4555566666666555555 4679999999999999999999999999999999999 898765554 4
Q ss_pred CcccHHHHHHHHhh----cCCEEEEEcCCCCCHHHHhcCCeEEEe
Q 001896 851 MPAGKADAVRSFQK----DGSIVAMVGDGINDSPALAAADVGMAI 891 (998)
Q Consensus 851 ~p~~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~vgia~ 891 (998)
.++.|.+.++.+.+ ....++||||...|..+.+++...+.+
T Consensus 84 ~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~~~~ 128 (320)
T TIGR01686 84 NWGPKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKITLPVKTL 128 (320)
T ss_pred ecCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCCCcc
Confidence 45677775555433 346899999999999999998876644
No 141
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0031 Score=61.66 Aligned_cols=63 Identities=33% Similarity=0.693 Sum_probs=56.5
Q ss_pred eeeeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 001896 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (998)
Q Consensus 129 ~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~ 195 (998)
+..|.| .|+|.+|++.+.+.|+.++||.++++++..+.+.|. ....+.+|.+.|+..|-++.+
T Consensus 8 ~~efaV-~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~---ts~p~s~i~~~le~tGr~Avl 70 (247)
T KOG4656|consen 8 EAEFAV-QMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVE---TSVPPSEIQNTLENTGRDAVL 70 (247)
T ss_pred eEEEEE-echhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEE---ccCChHHHHHHHHhhChheEE
Confidence 456777 599999999999999999999999999999999998 556789999999999988754
No 142
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.78 E-value=0.002 Score=62.95 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=61.7
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCH---------------HHHHHHHHHhCcce--EEEe-c-------CcccHHHH
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNW---------------RTAHAVAREIGIQD--VMAD-V-------MPAGKADA 858 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~---------------~~a~~ia~~~gi~~--~~~~-~-------~p~~K~~~ 858 (998)
++.|++.++++.|++.|+++.++|+.+. .....+.+.+|+.. .+.. . ....+.++
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~ 106 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGL 106 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 4689999999999999999999998763 45667778899862 2221 1 12234444
Q ss_pred HHHH----hhcCCEEEEEcCCCCCHHHHhcCCeE
Q 001896 859 VRSF----QKDGSIVAMVGDGINDSPALAAADVG 888 (998)
Q Consensus 859 v~~l----~~~g~~v~~vGDg~nD~~al~~A~vg 888 (998)
++.. .-..+.++||||...|+.+.+++++-
T Consensus 107 ~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~ 140 (147)
T TIGR01656 107 ILEALKRLGVDASRSLVVGDRLRDLQAARNAGLA 140 (147)
T ss_pred HHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCC
Confidence 4333 32346799999999999999999865
No 143
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.72 E-value=0.0036 Score=62.41 Aligned_cols=116 Identities=22% Similarity=0.326 Sum_probs=86.1
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc---------------------------------------
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--------------------------------------- 844 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~--------------------------------------- 844 (998)
.+-|++.++++.|++. +..+++|-.-.+-+.++|..+|++
T Consensus 83 ~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L~~~~~~~~~~geel 161 (315)
T COG4030 83 KLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELLSIIDVIASLSGEEL 161 (315)
T ss_pred ccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCccccccccccCccccCChHHHHHHHHhcCccccccHHHH
Confidence 4569999999999874 455666667888899999999995
Q ss_pred -----eEEEecCcccHHHHHHHHhhc------------------CCEEEEEcCCCCCHHHHhcCC-eE-EEec-CchHHH
Q 001896 845 -----DVMADVMPAGKADAVRSFQKD------------------GSIVAMVGDGINDSPALAAAD-VG-MAIG-AGTDIA 898 (998)
Q Consensus 845 -----~~~~~~~p~~K~~~v~~l~~~------------------g~~v~~vGDg~nD~~al~~A~-vg-ia~~-~~~~~~ 898 (998)
.+|.++.|-+-.++++..+.- ....++|||++.|..||+.+. -| +|+. ||.+-+
T Consensus 162 fe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~sa~~VGDSItDv~ml~~~rgrGglAvaFNGNeYa 241 (315)
T COG4030 162 FEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFSAVVVGDSITDVKMLEAARGRGGLAVAFNGNEYA 241 (315)
T ss_pred HHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCCcceeEecCcccchHHHHHhhccCceEEEecCCccc
Confidence 255555554433343333221 234799999999999999875 22 5555 788888
Q ss_pred HHhcCEEEecCChhHHHHHHHH
Q 001896 899 IEAADYVLMRNSLEDVIIAIDL 920 (998)
Q Consensus 899 ~~~ad~vl~~~~~~~l~~~i~~ 920 (998)
..-||+.+.+.+...+..+|++
T Consensus 242 l~eAdVAvisp~~~a~~pviel 263 (315)
T COG4030 242 LKEADVAVISPTAMAEAPVIEL 263 (315)
T ss_pred ccccceEEeccchhhhhHHHHH
Confidence 8899999999999988888875
No 144
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.66 E-value=0.0073 Score=64.57 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=43.7
Q ss_pred cHHHHHHHHhhc----CCEEEEEcCCCCCHHHHhcC--------CeEEEecCchHHHHHhcCEEEecCChhHHHHHHH
Q 001896 854 GKADAVRSFQKD----GSIVAMVGDGINDSPALAAA--------DVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 854 ~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A--------~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
+|...++.+.++ +..++|+||+.||..|++.+ ..+|.++.+. .+..|++++ ++...+..+++
T Consensus 167 ~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g~--~~~~A~~~~--~~~~~v~~~L~ 240 (244)
T TIGR00685 167 NKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSGS--KKTVAKFHL--TGPQQVLEFLG 240 (244)
T ss_pred CHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecCC--cCCCceEeC--CCHHHHHHHHH
Confidence 465555555433 34799999999999999998 4888885332 345688877 56777766653
No 145
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.66 E-value=0.0047 Score=58.73 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=58.8
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCC-CHHHHHHHHHHhC-------cceEEEecC---cccHHH----HHHHHh--hcC
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGD-NWRTAHAVAREIG-------IQDVMADVM---PAGKAD----AVRSFQ--KDG 866 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd-~~~~a~~ia~~~g-------i~~~~~~~~---p~~K~~----~v~~l~--~~g 866 (998)
++.+++.++++.|+++|+++.++|+. ....+..+.+..| +.++|.... ...|.+ +++.+. -..
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~~~p 108 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGVLKP 108 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCCCCc
Confidence 57999999999999999999999999 7888888888888 554333321 112333 333444 345
Q ss_pred CEEEEEcCCCCCHHHHh
Q 001896 867 SIVAMVGDGINDSPALA 883 (998)
Q Consensus 867 ~~v~~vGDg~nD~~al~ 883 (998)
+.++||||...|...++
T Consensus 109 ~~~l~igDs~~n~~~~~ 125 (128)
T TIGR01681 109 KSILFVDDRPDNNEEVD 125 (128)
T ss_pred ceEEEECCCHhHHHHHH
Confidence 78999999998877665
No 146
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.65 E-value=0.003 Score=65.47 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=60.9
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-----Cc--ccHHHH----HHHHhhcCCEEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----MP--AGKADA----VRSFQKDGSIVAMV 872 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-----~p--~~K~~~----v~~l~~~g~~v~~v 872 (998)
.+.|++.++++.|++.|+++.++|+.... .....+.+|+..+|..+ .. +.+.++ ++.+.-..+.++||
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 57799999999999999999999986654 47778889986543322 11 122233 33333345789999
Q ss_pred cCCC-CCHHHHhcCCeE
Q 001896 873 GDGI-NDSPALAAADVG 888 (998)
Q Consensus 873 GDg~-nD~~al~~A~vg 888 (998)
||+. +|+.+-++|++-
T Consensus 184 gD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 184 GDSLRNDYQGARAAGWR 200 (203)
T ss_pred CCCchHHHHHHHHcCCe
Confidence 9997 899999988764
No 147
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=96.61 E-value=0.0012 Score=66.17 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=67.6
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce----EEEec-CcccH--HH----HHHHHhhcCCEEE
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----VMADV-MPAGK--AD----AVRSFQKDGSIVA 870 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~----~~~~~-~p~~K--~~----~v~~l~~~g~~v~ 870 (998)
..++.|++.++++.|++.|++++++|+.+........+.+|+.. ++..- .+..| .. +++.+.-..+.++
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~ 154 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEIL 154 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEE
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEE
Confidence 45678999999999999999999999999999999999999873 33221 11122 23 4444444567899
Q ss_pred EEcCCCCCHHHHhcCCeE
Q 001896 871 MVGDGINDSPALAAADVG 888 (998)
Q Consensus 871 ~vGDg~nD~~al~~A~vg 888 (998)
||||+..|..+.+.|++.
T Consensus 155 ~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 155 FVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp EEESSHHHHHHHHHTTSE
T ss_pred EEeCCHHHHHHHHHcCCe
Confidence 999999999999999864
No 148
>PLN03017 trehalose-phosphatase
Probab=96.58 E-value=0.03 Score=62.23 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=47.0
Q ss_pred HHcCCeEEEEEECCeEEEEEEecC--CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH
Q 001896 780 EESARTGILVAYDDNLIGVMGIAD--PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA 838 (998)
Q Consensus 780 ~~~g~~~i~va~~~~~lG~i~l~d--~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia 838 (998)
.......+++-|||+++-+..-.| .+.++..++|++|+ .|+.++++||+.......+.
T Consensus 107 ~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 107 SRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred hcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 344456788899999997776444 48899999999999 78999999999988877664
No 149
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0091 Score=50.37 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=49.8
Q ss_pred EEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcC
Q 001896 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG 108 (998)
Q Consensus 50 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~G 108 (998)
...-.|||.+|+..|++.++.++||.++.++...+++++.-+ .++..+.+.+.+.|
T Consensus 8 v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 8 VLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred EEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 344589999999999999999999999999999999999743 68899999999876
No 150
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.55 E-value=0.016 Score=61.87 Aligned_cols=100 Identities=11% Similarity=0.078 Sum_probs=69.8
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHH--HHHHHhCcce-EEEec-CcccH-HHH
Q 001896 784 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH--AVAREIGIQD-VMADV-MPAGK-ADA 858 (998)
Q Consensus 784 ~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~--~ia~~~gi~~-~~~~~-~p~~K-~~~ 858 (998)
++.+.+..|+++ .-.+.+.|++.+++++|+++|++++++|+....... ...+++|+.. .+..+ ++.+- ...
T Consensus 8 ~~~~~~D~dG~l----~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~~~ 83 (242)
T TIGR01459 8 YDVFLLDLWGVI----IDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAVQM 83 (242)
T ss_pred CCEEEEeccccc----ccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHHHH
Confidence 445556566544 346778999999999999999999999997665544 6778899976 55554 33321 223
Q ss_pred HHHH-hh---cCCEEEEEcCCCCCHHHHhcCCe
Q 001896 859 VRSF-QK---DGSIVAMVGDGINDSPALAAADV 887 (998)
Q Consensus 859 v~~l-~~---~g~~v~~vGDg~nD~~al~~A~v 887 (998)
++.. ++ .+..+.++||+.+|...+...+.
T Consensus 84 l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 84 ILESKKRFDIRNGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred HHhhhhhccCCCceEEEeCCcccchhhhcCCCc
Confidence 3322 22 35679999999999988865543
No 151
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.54 E-value=0.0046 Score=60.87 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=59.0
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec------CcccHHHHHHH----HhhcCCEEEEEc
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV------MPAGKADAVRS----FQKDGSIVAMVG 873 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~------~p~~K~~~v~~----l~~~g~~v~~vG 873 (998)
...+++.++++.|++.|+++.++|+.....+....+.. +...|..+ .++.+.+.+.. +.-.. .++|||
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~iG 141 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLHVG 141 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEEEe
Confidence 34589999999999999999999999999988888875 54433221 12233443333 32234 799999
Q ss_pred CCCCCHHHHhcCC
Q 001896 874 DGINDSPALAAAD 886 (998)
Q Consensus 874 Dg~nD~~al~~A~ 886 (998)
|..+|+.+.++|+
T Consensus 142 Ds~~Di~aa~~aG 154 (154)
T TIGR01549 142 DNLNDIEGARNAG 154 (154)
T ss_pred CCHHHHHHHHHcc
Confidence 9999999988774
No 152
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.0044 Score=52.30 Aligned_cols=52 Identities=19% Similarity=0.410 Sum_probs=48.3
Q ss_pred cccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcC
Q 001896 136 GMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAG 190 (998)
Q Consensus 136 gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G 190 (998)
.|+|.+|..++++.++.++||.++.++...+++++.= ..++..+.+.+++.|
T Consensus 12 ~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g---~~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 12 NMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKG---NVDPVKLLKKLKKTG 63 (73)
T ss_pred CcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEE---ecCHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999994 368999999998876
No 153
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.49 E-value=0.0092 Score=63.79 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=43.6
Q ss_pred cHHHHHHHHhhc----CCEEEEEcCCCCCHHHHhcCCeEEEecCchHH-----HHHhc---CEEE-ecCChhHHHHHHH
Q 001896 854 GKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDI-----AIEAA---DYVL-MRNSLEDVIIAID 919 (998)
Q Consensus 854 ~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~-----~~~~a---d~vl-~~~~~~~l~~~i~ 919 (998)
.|...++.|+++ .+.|+++||+-||.+||..++-||.++|+.+. ..... .+.. ..+.-.+|.+.++
T Consensus 165 ~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL~~~~~~vvV~Na~~e~~~~~~~~~~~~~~iy~a~~~~a~GIlegl~ 243 (247)
T PF05116_consen 165 SKGAALRYLMERWGIPPEQVLVAGDSGNDLEMLEGGDHGVVVGNAQPELLSWLLEKLRQQERIYFAQGPYAAGILEGLQ 243 (247)
T ss_dssp SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHHCCSSEEEE-TTS-HHHHHHHHHCC-TTE--EE-SS-THHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHHcCcCCEEEEcCCCHHHHHHHHHhcccCCceEecCCCCcHHHHHHHH
Confidence 577777777665 24588899999999999999999999998776 22222 2222 3344566666654
No 154
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.45 E-value=0.0084 Score=66.82 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=63.4
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCC---------------CHHHHHHHHHHhCcc--eEEEec--------CcccHHH
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGD---------------NWRTAHAVAREIGIQ--DVMADV--------MPAGKAD 857 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd---------------~~~~a~~ia~~~gi~--~~~~~~--------~p~~K~~ 857 (998)
-.+.|++.++++.|++.|++++|+|+. ....+..+.+..|+. .++... ..+.|..
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~i~~~~~sd~~~~rKP~p~ 108 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPKTG 108 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEEEeCCcCcccCCCCCCCHH
Confidence 467899999999999999999999984 244566778888874 222211 1234455
Q ss_pred HHHHHhhc----CCEEEEEcCCCCCHHHHhcCCeE
Q 001896 858 AVRSFQKD----GSIVAMVGDGINDSPALAAADVG 888 (998)
Q Consensus 858 ~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vg 888 (998)
.+..+.++ ...+.||||+.+|..+.++|++-
T Consensus 109 ~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~ 143 (354)
T PRK05446 109 LVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIK 143 (354)
T ss_pred HHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCe
Confidence 56544333 37899999999999999999976
No 155
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.39 E-value=0.031 Score=69.89 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=54.8
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHH-HhCCCEEEEEcCCCHHHHHHHHHH
Q 001896 772 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGL-LKMGVRPVMVTGDNWRTAHAVARE 840 (998)
Q Consensus 772 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l-~~~gi~~~i~tgd~~~~a~~ia~~ 840 (998)
.+.....+.....+.+++.|||+++-.-...-.+.++..+++++| ++.|..++++||+...........
T Consensus 584 ~~~i~~~y~~~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 584 MEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred HHHHHHHHHhhcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 345566677777889999999999854433446778999999998 777999999999999988877754
No 156
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=96.30 E-value=0.013 Score=61.03 Aligned_cols=89 Identities=11% Similarity=0.134 Sum_probs=65.6
Q ss_pred ecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHh---Cc----ceEEEec-CcccHH----HHHHHHhhcCCE
Q 001896 801 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREI---GI----QDVMADV-MPAGKA----DAVRSFQKDGSI 868 (998)
Q Consensus 801 l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~---gi----~~~~~~~-~p~~K~----~~v~~l~~~g~~ 868 (998)
++-++.|++.+++++|+++|+++.++|..+......+.+.. ++ +.+|... .++.+. .+++.+.-..+.
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 45679999999999999999999999998888777776665 33 2333322 122222 344445444578
Q ss_pred EEEEcCCCCCHHHHhcCCeEE
Q 001896 869 VAMVGDGINDSPALAAADVGM 889 (998)
Q Consensus 869 v~~vGDg~nD~~al~~A~vgi 889 (998)
++||||...|+.|.++|++-.
T Consensus 172 ~lfVgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 172 ILFLSDIINELDAARKAGLHT 192 (220)
T ss_pred EEEEeCCHHHHHHHHHcCCEE
Confidence 999999999999999999753
No 157
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.28 E-value=0.0075 Score=59.74 Aligned_cols=86 Identities=22% Similarity=0.232 Sum_probs=61.9
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCC---------------CHHHHHHHHHHhCcc--eEE-E-----ecC--cccHHHH
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGD---------------NWRTAHAVAREIGIQ--DVM-A-----DVM--PAGKADA 858 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd---------------~~~~a~~ia~~~gi~--~~~-~-----~~~--p~~K~~~ 858 (998)
++.|++.++++.|+++|++++++|.. ....+..+.+.+|+. .++ + .-. .+.|..+
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~ 108 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKL 108 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 45689999999999999999999985 245677788888886 222 1 111 1233444
Q ss_pred HHHHhh----cCCEEEEEcCCCCCHHHHhcCCeEE
Q 001896 859 VRSFQK----DGSIVAMVGDGINDSPALAAADVGM 889 (998)
Q Consensus 859 v~~l~~----~g~~v~~vGDg~nD~~al~~A~vgi 889 (998)
++.+.+ ..+.+.||||+.+|+.+.+++++..
T Consensus 109 ~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~ 143 (161)
T TIGR01261 109 LEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRG 143 (161)
T ss_pred HHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeE
Confidence 444432 2356999999999999999999663
No 158
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=96.27 E-value=0.013 Score=61.31 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=63.0
Q ss_pred CCCcHhHHHHHHHH--HhCCCEEEEEcCCCHHHHHHHHHHhCcceEE----Ee----------------------cCc-c
Q 001896 803 DPVKREAAVVVEGL--LKMGVRPVMVTGDNWRTAHAVAREIGIQDVM----AD----------------------VMP-A 853 (998)
Q Consensus 803 d~~r~~~~~~i~~l--~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~----~~----------------------~~p-~ 853 (998)
=|+.|+.+++++.+ ++.|+.+.++|.-+......+.+..|+...| ++ +.| -
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~Nm 149 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNM 149 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCcc
Confidence 36789999999999 4579999999999999999999999997432 21 112 2
Q ss_pred cHHHHHHHHhhc----C---CEEEEEcCCCCCHH
Q 001896 854 GKADAVRSFQKD----G---SIVAMVGDGINDSP 880 (998)
Q Consensus 854 ~K~~~v~~l~~~----g---~~v~~vGDg~nD~~ 880 (998)
-|..+++.+++. | .+|.+||||.||.-
T Consensus 150 CK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~C 183 (234)
T PF06888_consen 150 CKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFC 183 (234)
T ss_pred chHHHHHHHHHHHhhcCCCcceEEEECCCCCCcC
Confidence 488899888765 4 68999999999964
No 159
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.09 E-value=0.012 Score=61.93 Aligned_cols=60 Identities=27% Similarity=0.387 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCcc----eEEEecCcc--cHHHHHHHHhhc----CCEEEEEcCCCCCHHHHhcCCeEEEe
Q 001896 832 RTAHAVAREIGIQ----DVMADVMPA--GKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAI 891 (998)
Q Consensus 832 ~~a~~ia~~~gi~----~~~~~~~p~--~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~ 891 (998)
.......++.|+. ..+.++.|. .|...++.+.+. .+.|+++||+.||.+||+.|+.|||+
T Consensus 151 ~~~~~~l~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 151 PRFTALLADLGLAIVQGNRFSHVLGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred HHHHHHHHHcCCeEEecCCeeEEecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 3344444555664 334455554 587777666443 56799999999999999999999987
No 160
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.04 E-value=0.0066 Score=59.35 Aligned_cols=89 Identities=12% Similarity=-0.024 Sum_probs=66.4
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce-EEEec-----CcccHHHHHHHH---hhcCCEEEEE
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-VMADV-----MPAGKADAVRSF---QKDGSIVAMV 872 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~-~~~~~-----~p~~K~~~v~~l---~~~g~~v~~v 872 (998)
.-.+||++.+.++.|+ .++++.++|+.+...+..+.+.+|+.. ++..+ ....|..+.+.+ ....+.+.||
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i 121 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIII 121 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEE
Confidence 3357999999999999 579999999999999999999999854 32332 122233344444 3446789999
Q ss_pred cCCCCCHHHHhcCCeEEEe
Q 001896 873 GDGINDSPALAAADVGMAI 891 (998)
Q Consensus 873 GDg~nD~~al~~A~vgia~ 891 (998)
||..+|..+-+++++-|..
T Consensus 122 ~Ds~~~~~aa~~ngI~i~~ 140 (148)
T smart00577 122 DDSPDSWPFHPENLIPIKP 140 (148)
T ss_pred ECCHHHhhcCccCEEEecC
Confidence 9999999988777665543
No 161
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.00 E-value=0.042 Score=55.00 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=44.7
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc
Q 001896 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 844 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~ 844 (998)
.+|+...|+++++ -+.+- ..+.+.+..|+++|++|+.+|......-..+-+.+|+.
T Consensus 8 ~lIFtDlD~TLl~-~~ye~---~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 8 LLIFTDLDGTLLP-HSYEW---QPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred eEEEEcccCcccC-CCCCC---CccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 3556666788777 23332 34678999999999999999999999999999999985
No 162
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=95.99 E-value=0.032 Score=55.00 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=83.3
Q ss_pred HHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCC--EEEEEcCC-------CHHHHHHHHHHhCcceE-EE
Q 001896 779 LEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGV--RPVMVTGD-------NWRTAHAVAREIGIQDV-MA 848 (998)
Q Consensus 779 ~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi--~~~i~tgd-------~~~~a~~ia~~~gi~~~-~~ 848 (998)
+.+.|.+.+.+-.|+++.. --++.+.|+..+.+++|++.+. ++.++|.. +...|..+.+.+|++-+ +.
T Consensus 36 Lk~~Gik~li~DkDNTL~~--~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTP--PYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred hhhcCceEEEEcCCCCCCC--CCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeC
Confidence 5667788888887877543 2478889999999999999976 59999986 48899999999999754 44
Q ss_pred ecCcccHHHHHHHHhhc-----CCEEEEEcCC-CCCHHHHhcCC
Q 001896 849 DVMPAGKADAVRSFQKD-----GSIVAMVGDG-INDSPALAAAD 886 (998)
Q Consensus 849 ~~~p~~K~~~v~~l~~~-----g~~v~~vGDg-~nD~~al~~A~ 886 (998)
.-.|....++.+.++.+ .++++||||- ..|+-+-...+
T Consensus 114 ~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G 157 (168)
T PF09419_consen 114 AKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMG 157 (168)
T ss_pred CCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccC
Confidence 45787777888888765 6789999998 45877665554
No 163
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.97 E-value=0.017 Score=74.46 Aligned_cols=109 Identities=10% Similarity=0.115 Sum_probs=76.9
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc-eEEEec-----C--cccHHH----HHHHHhhcCCEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-DVMADV-----M--PAGKAD----AVRSFQKDGSIVAM 871 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~-~~~~~~-----~--p~~K~~----~v~~l~~~g~~v~~ 871 (998)
.+.|++.+.++.|+++|+++.++|+.....+....+++|+. .+|..+ . ++.+.+ +++.+.-..+.++|
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 46799999999999999999999999999999999999985 322221 1 112223 34444444678999
Q ss_pred EcCCCCCHHHHhcCCe---EEEecC-chHHHHHhcCEEEecCChhHH
Q 001896 872 VGDGINDSPALAAADV---GMAIGA-GTDIAIEAADYVLMRNSLEDV 914 (998)
Q Consensus 872 vGDg~nD~~al~~A~v---gia~~~-~~~~~~~~ad~vl~~~~~~~l 914 (998)
|||..+|+.+.++|++ ++..+. ..+.....+|+++ +++..+
T Consensus 241 IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi--~~l~el 285 (1057)
T PLN02919 241 IEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIR--KDIGNI 285 (1057)
T ss_pred EcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEE--CChHHC
Confidence 9999999999999995 333332 2233345667777 556553
No 164
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.76 E-value=0.038 Score=59.13 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=61.2
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHH---HHHHHHHHhCcc-----eEEEecCcccHHHHHHHHhhcCCEEEEEc
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWR---TAHAVAREIGIQ-----DVMADVMPAGKADAVRSFQKDGSIVAMVG 873 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~---~a~~ia~~~gi~-----~~~~~~~p~~K~~~v~~l~~~g~~v~~vG 873 (998)
..++-|++.+.++.|++.|++++++|+.... .+....+..|++ .++.+-....|....+.+.+.-..+++||
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~Ivl~vG 195 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEIVLLFG 195 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCEEEEEC
Confidence 4557799999999999999999999998743 345667788985 34443233457666777766667799999
Q ss_pred CCCCCHHHH
Q 001896 874 DGINDSPAL 882 (998)
Q Consensus 874 Dg~nD~~al 882 (998)
|..+|....
T Consensus 196 D~~~Df~~~ 204 (266)
T TIGR01533 196 DNLLDFDDF 204 (266)
T ss_pred CCHHHhhhh
Confidence 999998654
No 165
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=95.70 E-value=0.0083 Score=63.10 Aligned_cols=86 Identities=12% Similarity=0.073 Sum_probs=63.6
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEe-c-C------cccHHHHH----HHHhhcCCEEE
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-V-M------PAGKADAV----RSFQKDGSIVA 870 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~-~-~------p~~K~~~v----~~l~~~g~~v~ 870 (998)
-++.|++.++++.| ++++.++|+.+...+....+.+|+..+|.. + + ++.+.++. +.+.-..+.++
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 45678999999998 489999999998889999999999765531 1 1 12223333 33333346799
Q ss_pred EEcCCCCCHHHHhcCCeEEEe
Q 001896 871 MVGDGINDSPALAAADVGMAI 891 (998)
Q Consensus 871 ~vGDg~nD~~al~~A~vgia~ 891 (998)
||||..+|+.+-++|++...+
T Consensus 164 ~igDs~~di~aA~~aG~~~i~ 184 (221)
T PRK10563 164 LVDDSSAGAQSGIAAGMEVFY 184 (221)
T ss_pred EEeCcHhhHHHHHHCCCEEEE
Confidence 999999999999999977543
No 166
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.66 E-value=0.016 Score=59.78 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=58.9
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHH-hCcc----eEEEe-c--CcccHHHH----HHHHhhcCCEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE-IGIQ----DVMAD-V--MPAGKADA----VRSFQKDGSIVAM 871 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~-~gi~----~~~~~-~--~p~~K~~~----v~~l~~~g~~v~~ 871 (998)
++.|++.++++.|++.|+++.++|+.+.......... .++. .++.. - ..+.++++ ++.+.-..+.++|
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 4789999999999999999999999876665443322 3443 23222 1 11223333 3334334567999
Q ss_pred EcCCCCCHHHHhcCCeE
Q 001896 872 VGDGINDSPALAAADVG 888 (998)
Q Consensus 872 vGDg~nD~~al~~A~vg 888 (998)
|||...|+.+.+++++.
T Consensus 164 vgD~~~di~aA~~aG~~ 180 (199)
T PRK09456 164 FDDNADNIEAANALGIT 180 (199)
T ss_pred eCCCHHHHHHHHHcCCE
Confidence 99999999999999975
No 167
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=95.65 E-value=0.059 Score=53.11 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=63.4
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHH---HHHHH-----hCcc--eEEEe--------------cCccc-HH
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH---AVARE-----IGIQ--DVMAD--------------VMPAG-KA 856 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~---~ia~~-----~gi~--~~~~~--------------~~p~~-K~ 856 (998)
+|.+.|++.++++++++.|++++++||++...+. ...+. .+++ .++.+ -.|+. |.
T Consensus 25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~ 104 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKI 104 (157)
T ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHH
Confidence 4678899999999999999999999999988874 55555 2343 11111 12332 77
Q ss_pred HHHHHHhh-----cCCEEEEEcCCCCCHHHHhcCCeE
Q 001896 857 DAVRSFQK-----DGSIVAMVGDGINDSPALAAADVG 888 (998)
Q Consensus 857 ~~v~~l~~-----~g~~v~~vGDg~nD~~al~~A~vg 888 (998)
+.++.+.+ ...-++.+|++.+|+.+-+++++.
T Consensus 105 ~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 105 ACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 77777776 234567799999999998887764
No 168
>PRK10444 UMP phosphatase; Provisional
Probab=95.58 E-value=0.055 Score=57.79 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=38.5
Q ss_pred EEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHH---hCc
Q 001896 797 GVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE---IGI 843 (998)
Q Consensus 797 G~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~---~gi 843 (998)
|++.-.+.+-|++.++++.|+++|++++++||....+...++++ +|+
T Consensus 10 GtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 10 GVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred CceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 34444678889999999999999999999999988777777666 466
No 169
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.54 E-value=0.019 Score=59.92 Aligned_cols=86 Identities=12% Similarity=0.081 Sum_probs=57.0
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHH--HHHHHHHhCcc----eEEEec-----CcccH--HHHHHHHhhcCCEE
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRT--AHAVAREIGIQ----DVMADV-----MPAGK--ADAVRSFQKDGSIV 869 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~--a~~ia~~~gi~----~~~~~~-----~p~~K--~~~v~~l~~~g~~v 869 (998)
-++.|++.++++.|+++|++++++|+..... ........++. .++... .|+.. ..+++.+.-..+.+
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~ 172 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEEC 172 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 4578999999999999999999999865432 33223334543 333221 22211 12333333345679
Q ss_pred EEEcCCCCCHHHHhcCCeE
Q 001896 870 AMVGDGINDSPALAAADVG 888 (998)
Q Consensus 870 ~~vGDg~nD~~al~~A~vg 888 (998)
+||||...|+.+-++|++-
T Consensus 173 l~i~D~~~di~aA~~aG~~ 191 (211)
T TIGR02247 173 VFLDDLGSNLKPAAALGIT 191 (211)
T ss_pred EEEcCCHHHHHHHHHcCCE
Confidence 9999999999999999975
No 170
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.37 E-value=0.1 Score=56.23 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=38.8
Q ss_pred EEEEECCeEEEEEEecCC----CcHhHHHHHHHHHhCCCEEEEEcCCCHHH---HHHHHHHhCcc
Q 001896 787 ILVAYDDNLIGVMGIADP----VKREAAVVVEGLLKMGVRPVMVTGDNWRT---AHAVAREIGIQ 844 (998)
Q Consensus 787 i~va~~~~~lG~i~l~d~----~r~~~~~~i~~l~~~gi~~~i~tgd~~~~---a~~ia~~~gi~ 844 (998)
+.+-.||++. -.+. +-|++.++|++||++|++++++||++..+ .....+.+|++
T Consensus 4 i~~D~DGtl~----~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 4 VLLDISGVLY----ISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred EEEeCCCeEE----eCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 4444555554 3455 78899999999999999999999876654 44445556764
No 171
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=95.04 E-value=0.036 Score=56.52 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=60.7
Q ss_pred CcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecC-------cccHHHHH----HHHhhcCCEEEEEc
Q 001896 805 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM-------PAGKADAV----RSFQKDGSIVAMVG 873 (998)
Q Consensus 805 ~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~-------p~~K~~~v----~~l~~~g~~v~~vG 873 (998)
+.|+ .++++.|++. +++.++||.....+....+.+|+..+|..+- ++.+.++. +.+......+.|||
T Consensus 89 ~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ig 166 (188)
T PRK10725 89 PLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFE 166 (188)
T ss_pred CccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEe
Confidence 3454 6899999875 8999999999999999999999976555431 12233333 33333345699999
Q ss_pred CCCCCHHHHhcCCeE
Q 001896 874 DGINDSPALAAADVG 888 (998)
Q Consensus 874 Dg~nD~~al~~A~vg 888 (998)
|..+|+.+-++|++-
T Consensus 167 Ds~~di~aA~~aG~~ 181 (188)
T PRK10725 167 DADFGIQAARAAGMD 181 (188)
T ss_pred ccHhhHHHHHHCCCE
Confidence 999999999999964
No 172
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=94.95 E-value=0.044 Score=55.71 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=62.0
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEE----ec--C-----cccHHH----HHHHHhhcCCE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA----DV--M-----PAGKAD----AVRSFQKDGSI 868 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~----~~--~-----p~~K~~----~v~~l~~~g~~ 868 (998)
++.+++.++++.|+ .+++++|+.+...+....+.+|+..+|. .- . ++.+.+ +++.+....+.
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 160 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPER 160 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccc
Confidence 47799999999998 4789999999999999999999964332 21 1 122333 34444445678
Q ss_pred EEEEcCCCCCHHHHhcCCeEE
Q 001896 869 VAMVGDGINDSPALAAADVGM 889 (998)
Q Consensus 869 v~~vGDg~nD~~al~~A~vgi 889 (998)
++||||...|+.+-+++++..
T Consensus 161 ~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 161 AIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred eEEEeCCHHHHHHHHHcCCEE
Confidence 999999999999999998653
No 173
>PLN02151 trehalose-phosphatase
Probab=94.81 E-value=0.27 Score=54.66 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=43.9
Q ss_pred HcCCeEEEEEECCeEEEEEEecCC--CcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH
Q 001896 781 ESARTGILVAYDDNLIGVMGIADP--VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA 838 (998)
Q Consensus 781 ~~g~~~i~va~~~~~lG~i~l~d~--~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia 838 (998)
+.....+++.|||+++-+..--|. +.++++++|+.|.+ +..++++||++......+.
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~ 153 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFV 153 (354)
T ss_pred cCCceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHc
Confidence 334567888999999976544443 66899999999994 5789999999877766654
No 174
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=94.69 E-value=0.15 Score=53.15 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=58.0
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHH---HHHHHHHhCcce---EEEec-Cccc------HHHHHHHHhhcCC-
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRT---AHAVAREIGIQD---VMADV-MPAG------KADAVRSFQKDGS- 867 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~---a~~ia~~~gi~~---~~~~~-~p~~------K~~~v~~l~~~g~- 867 (998)
.-+.-|++.++++.|++.|++++++||+.... +..-.++.|++. ++-+- .... |...-+.+.++|.
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYr 197 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYR 197 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCce
Confidence 44677999999999999999999999998766 445556678864 22221 1112 6566667776765
Q ss_pred EEEEEcCCCCCHH
Q 001896 868 IVAMVGDGINDSP 880 (998)
Q Consensus 868 ~v~~vGDg~nD~~ 880 (998)
.++.+||..+|..
T Consensus 198 Iv~~iGDq~sDl~ 210 (229)
T TIGR01675 198 IWGNIGDQWSDLL 210 (229)
T ss_pred EEEEECCChHHhc
Confidence 6899999999873
No 175
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=94.69 E-value=0.053 Score=57.71 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=57.6
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-------CcccHHHHHH----HHhhcCCEEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGKADAVR----SFQKDGSIVAMV 872 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~~v~----~l~~~g~~v~~v 872 (998)
++.|++.++++.|++. +++.++|+.+.. .+..|+..+|..+ ..+.+.++.+ .+.-..+.++||
T Consensus 113 ~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~V 186 (238)
T PRK10748 113 DVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHV 186 (238)
T ss_pred CCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEE
Confidence 5679999999999975 899999986554 2667876544332 1122344443 333335679999
Q ss_pred cCC-CCCHHHHhcCCeEEEec
Q 001896 873 GDG-INDSPALAAADVGMAIG 892 (998)
Q Consensus 873 GDg-~nD~~al~~A~vgia~~ 892 (998)
||. ..|+.+-++|++-..+.
T Consensus 187 GD~~~~Di~~A~~aG~~~i~v 207 (238)
T PRK10748 187 GDDLTTDVAGAIRCGMQACWI 207 (238)
T ss_pred cCCcHHHHHHHHHCCCeEEEE
Confidence 999 59999999999765543
No 176
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=94.46 E-value=0.2 Score=53.65 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=43.5
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcC---CCHHHHHHHHHHhCcc
Q 001896 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTG---DNWRTAHAVAREIGIQ 844 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tg---d~~~~a~~ia~~~gi~ 844 (998)
+.+.+-.||++. -.+.+-|++.++|++|+++|++++++|| ++........+.+|++
T Consensus 2 ~~~~~D~DGtl~----~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 2 KGYLIDLDGTMY----KGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred CEEEEeCCCceE----cCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 345566666655 3466667999999999999999999996 6677777777888875
No 177
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=94.03 E-value=0.13 Score=54.10 Aligned_cols=87 Identities=18% Similarity=0.141 Sum_probs=71.4
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec-----------CcccHHHHHHHHhhcCCEEE
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----------MPAGKADAVRSFQKDGSIVA 870 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~-----------~p~~K~~~v~~l~~~g~~v~ 870 (998)
..++.|++.+.+++|+++|+.+.+.|+.+...+..+.+.+|+.++|... .|+-=....+.|.-....+.
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 4578899999999999999999999999999999999999998766642 12222345555555678899
Q ss_pred EEcCCCCCHHHHhcCCeE
Q 001896 871 MVGDGINDSPALAAADVG 888 (998)
Q Consensus 871 ~vGDg~nD~~al~~A~vg 888 (998)
.|.|..+.+.|.++|+.-
T Consensus 164 viEDs~~Gi~Aa~aAGm~ 181 (221)
T COG0637 164 VVEDSPAGIQAAKAAGMR 181 (221)
T ss_pred EEecchhHHHHHHHCCCE
Confidence 999999999999999943
No 178
>PHA02597 30.2 hypothetical protein; Provisional
Probab=93.95 E-value=0.13 Score=52.97 Aligned_cols=83 Identities=18% Similarity=0.112 Sum_probs=55.7
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce----EE-----EecCcccHHHHHHHH-hhcC-CEEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----VM-----ADVMPAGKADAVRSF-QKDG-SIVAMV 872 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~----~~-----~~~~p~~K~~~v~~l-~~~g-~~v~~v 872 (998)
++.|++.++++.|++.+ +.+++|..+........+.+|+.. +| ++.. ..|.+++... ++.| +.++||
T Consensus 74 ~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~-~~kp~~~~~a~~~~~~~~~v~v 151 (197)
T PHA02597 74 SAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHD-ESKEKLFIKAKEKYGDRVVCFV 151 (197)
T ss_pred cCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccC-cccHHHHHHHHHHhCCCcEEEe
Confidence 47899999999999975 567777755555554556666643 21 2222 2355544433 3333 468899
Q ss_pred cCCCCCHHHHhcC--CeE
Q 001896 873 GDGINDSPALAAA--DVG 888 (998)
Q Consensus 873 GDg~nD~~al~~A--~vg 888 (998)
||..+|+.+.++| |+-
T Consensus 152 gDs~~di~aA~~a~~Gi~ 169 (197)
T PHA02597 152 DDLAHNLDAAHEALSQLP 169 (197)
T ss_pred CCCHHHHHHHHHHHcCCc
Confidence 9999999999999 964
No 179
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.81 E-value=0.25 Score=51.98 Aligned_cols=114 Identities=24% Similarity=0.262 Sum_probs=74.7
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec---------CcccHH--HHHHHHhhcCCEEEE
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAGKA--DAVRSFQKDGSIVAM 871 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~---------~p~~K~--~~v~~l~~~g~~v~~ 871 (998)
-++.+++.++++.|++. ++++++|.-.........+++|+..+|..+ .|+.+. .+.+.+.-..+.++|
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence 46779999999999998 999999998888899999999987544433 233321 234444444668999
Q ss_pred EcCC-CCCHHHHhcCCeE-EEecCchH---HHHHhcCEEEecCChhHHHHHHH
Q 001896 872 VGDG-INDSPALAAADVG-MAIGAGTD---IAIEAADYVLMRNSLEDVIIAID 919 (998)
Q Consensus 872 vGDg-~nD~~al~~A~vg-ia~~~~~~---~~~~~ad~vl~~~~~~~l~~~i~ 919 (998)
|||. .||+...++++.- |-+..... ......|..+ .++..+..++.
T Consensus 177 VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i--~~l~~l~~~~~ 227 (229)
T COG1011 177 VGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEI--SSLAELLDLLE 227 (229)
T ss_pred ECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEE--cCHHHHHHHHh
Confidence 9997 6675666777754 43332211 1113455555 55666666553
No 180
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=93.48 E-value=0.22 Score=50.20 Aligned_cols=89 Identities=21% Similarity=0.357 Sum_probs=65.0
Q ss_pred CCCcHhHHHHHHHHHhCCC-EEEEEcCCCHHHHHHHHHHhCcceEEEe--------------------------cCcc--
Q 001896 803 DPVKREAAVVVEGLLKMGV-RPVMVTGDNWRTAHAVAREIGIQDVMAD--------------------------VMPA-- 853 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi-~~~i~tgd~~~~a~~ia~~~gi~~~~~~--------------------------~~p~-- 853 (998)
=|+-|+..++|+.+++.|. .+.++|--|......+.+..|+...|++ +.|.
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNm 162 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNM 162 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhh
Confidence 3778999999999999996 9999999999999999999999632222 1232
Q ss_pred cHHHHHHHHhhcC-------CEEEEEcCCCCCH-HHHhcCCeEEEe
Q 001896 854 GKADAVRSFQKDG-------SIVAMVGDGINDS-PALAAADVGMAI 891 (998)
Q Consensus 854 ~K~~~v~~l~~~g-------~~v~~vGDg~nD~-~al~~A~vgia~ 891 (998)
-|..++..++..+ +++.++|||.||. |.++...--++|
T Consensus 163 CKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~am 208 (256)
T KOG3120|consen 163 CKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAM 208 (256)
T ss_pred hhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceec
Confidence 2666666665442 3799999999994 555444333344
No 181
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=93.17 E-value=0.059 Score=48.72 Aligned_cols=82 Identities=18% Similarity=0.264 Sum_probs=52.5
Q ss_pred EEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH---HHhCcc----eEEEecCcccHHHHHHHHhh--cCCEE
Q 001896 799 MGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA---REIGIQ----DVMADVMPAGKADAVRSFQK--DGSIV 869 (998)
Q Consensus 799 i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia---~~~gi~----~~~~~~~p~~K~~~v~~l~~--~g~~v 869 (998)
+...+.+-|++.++|+.|+++|++++++|..+..+...++ +.+|++ +++... ....+.|++ .+.+|
T Consensus 9 l~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~-----~~~~~~l~~~~~~~~v 83 (101)
T PF13344_consen 9 LYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSG-----MAAAEYLKEHKGGKKV 83 (101)
T ss_dssp SEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHH-----HHHHHHHHHHTTSSEE
T ss_pred eEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChH-----HHHHHHHHhcCCCCEE
Confidence 3457788899999999999999999999987755544444 667885 222211 123444444 57899
Q ss_pred EEEcCCCCCHHHHhcCC
Q 001896 870 AMVGDGINDSPALAAAD 886 (998)
Q Consensus 870 ~~vGDg~nD~~al~~A~ 886 (998)
..+|.. .....++.++
T Consensus 84 ~vlG~~-~l~~~l~~~G 99 (101)
T PF13344_consen 84 YVLGSD-GLREELREAG 99 (101)
T ss_dssp EEES-H-HHHHHHHHTT
T ss_pred EEEcCH-HHHHHHHHcC
Confidence 999976 4444555444
No 182
>PLN02645 phosphoglycolate phosphatase
Probab=92.94 E-value=0.13 Score=57.18 Aligned_cols=103 Identities=14% Similarity=0.108 Sum_probs=68.3
Q ss_pred CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH---HHhCcceEEEec-CcccHHHH
Q 001896 783 ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA---REIGIQDVMADV-MPAGKADA 858 (998)
Q Consensus 783 g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia---~~~gi~~~~~~~-~p~~K~~~ 858 (998)
.++.+.+-.||++.- .+.+-|++.++|+.|+++|++++++|+.+..+...++ +++|+.....++ ++.. ..
T Consensus 27 ~~~~~~~D~DGtl~~----~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~--~~ 100 (311)
T PLN02645 27 SVETFIFDCDGVIWK----GDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSF--AA 100 (311)
T ss_pred hCCEEEEeCcCCeEe----CCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHH--HH
Confidence 367788888887653 4667799999999999999999999999866666655 568875222221 1211 12
Q ss_pred HHHHhhc----CCEEEEEcCCCCCHHHHhcCCeEEEec
Q 001896 859 VRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIG 892 (998)
Q Consensus 859 v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~ 892 (998)
.+.++.. ++. +++++...|...++.+++-..-|
T Consensus 101 ~~~l~~~~~~~~~~-V~viG~~~~~~~l~~~Gi~~~~g 137 (311)
T PLN02645 101 AAYLKSINFPKDKK-VYVIGEEGILEELELAGFQYLGG 137 (311)
T ss_pred HHHHHhhccCCCCE-EEEEcCHHHHHHHHHCCCEEecC
Confidence 2222221 344 55555667899999888765433
No 183
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=92.05 E-value=0.32 Score=52.16 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=52.0
Q ss_pred CeEEEEEECCeEEEEEEecCC--Cc-HhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEE
Q 001896 784 RTGILVAYDDNLIGVMGIADP--VK-REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM 847 (998)
Q Consensus 784 ~~~i~va~~~~~lG~i~l~d~--~r-~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~ 847 (998)
..++++-.|++++.- +.+ +| |++.+++++|+++|++++++|+.....+....+++|++.+|
T Consensus 126 ~kvIvFDLDgTLi~~---~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 126 PHVVVFDLDSTLITD---EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ceEEEEecCCCCcCC---CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 357888889988764 433 56 99999999999999999999999999999999999998654
No 184
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=91.82 E-value=0.44 Score=47.56 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=41.2
Q ss_pred EEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHH---HHHhCcc
Q 001896 795 LIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAV---AREIGIQ 844 (998)
Q Consensus 795 ~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~i---a~~~gi~ 844 (998)
+-|.+..+|..-|++.++++.||.++.++..+|.....+-+.+ .+++|++
T Consensus 14 lSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~ 66 (262)
T KOG3040|consen 14 LSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD 66 (262)
T ss_pred ccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC
Confidence 4689999999999999999999999999999987665554444 4557875
No 185
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=91.21 E-value=1.4 Score=38.24 Aligned_cols=65 Identities=37% Similarity=0.593 Sum_probs=49.6
Q ss_pred EEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccc
Q 001896 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111 (998)
Q Consensus 47 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 111 (998)
+..+.+.|+.|..|...++..+...+++....++.......+.++........+.....+.||..
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPS 88 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCe
Confidence 44577999999999999999999999988888888888876665443334555555566677764
No 186
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=90.94 E-value=0.48 Score=55.67 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=87.3
Q ss_pred CcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHH-hCcceEEEe-------------------cCcccHHHHHHHHhh
Q 001896 805 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE-IGIQDVMAD-------------------VMPAGKADAVRSFQK 864 (998)
Q Consensus 805 ~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~-~gi~~~~~~-------------------~~p~~K~~~v~~l~~ 864 (998)
+++++.+. ++++|.+ +++|+-....++.+|++ +|++.+.+. +.-++|.+.++....
T Consensus 111 l~~~a~~~---~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g 186 (497)
T PLN02177 111 VHPETWRV---FNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG 186 (497)
T ss_pred cCHHHHHH---HHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhC
Confidence 66775554 4567755 99999999999999987 899854221 123458777764332
Q ss_pred cCCEEEEEcCCCCCHHHHhcCCeEEEecCch----HHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001896 865 DGSIVAMVGDGINDSPALAAADVGMAIGAGT----DIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 940 (998)
Q Consensus 865 ~g~~v~~vGDg~nD~~al~~A~vgia~~~~~----~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~ 940 (998)
......+.||+.||.|+|+.|+-+..++... ...+.-.-+|.-+ ||-.++=--.+....+.|-=
T Consensus 187 ~~~~~~aYgDS~sD~plL~~a~e~y~V~~~~~~~~~~~~~~~~~~fhd------------grl~~~p~~~~~l~~~~~~p 254 (497)
T PLN02177 187 DALPDLGLGDRETDHDFMSICKEGYMVPRTKCEPLPRNKLLSPVIFHE------------GRLVQRPTPLVALLTFLWMP 254 (497)
T ss_pred CCCceEEEECCccHHHHHHhCCccEEeCCCCCCcCCcccCCCceeeeC------------CcccCCCCHHHHHHHHHHHH
Confidence 1222378999999999999999999998521 0111122344444 45444444445555555555
Q ss_pred HHHHHHhhhccccCCCCccHHHHHHHh
Q 001896 941 IAIPIAAGVFFPSLGIKLPPWAAGACM 967 (998)
Q Consensus 941 ~~i~~a~g~~~~~~g~~l~p~~a~~~m 967 (998)
++++++.. --+.|+.|+-+++-.++
T Consensus 255 ~g~~l~~~--r~~~~~~lp~~~~~~~~ 279 (497)
T PLN02177 255 IGFILSLL--RVYLNIPLPERIARYNY 279 (497)
T ss_pred HHHHHHHH--HHHHhhhhHHHHHHHHH
Confidence 55555531 11134445545554433
No 187
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=90.77 E-value=3.7 Score=53.69 Aligned_cols=144 Identities=16% Similarity=0.247 Sum_probs=81.5
Q ss_pred EEEEEeCCCCCh----hHHHHHHHhhcCCCCeeEEEEeecccEEEE--EECCCCCChH----HHHHHHHhcCcc-chhcc
Q 001896 47 RIQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALLQNKADV--VFDPDLVKDE----DIKNAIEDAGFE-AEILA 115 (998)
Q Consensus 47 ~~~~~v~gm~C~----~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v--~~~~~~~~~~----~i~~~i~~~Gy~-~~~~~ 115 (998)
.+...-+|.+-. .-...+|++++.++|+++++..-..+...+ .++.+ .+.+ ++.+.+.+.--. +...+
T Consensus 44 ~V~~~~pgas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~-~d~~~a~~~v~~~i~~~~~~LP~~~~ 122 (1021)
T PF00873_consen 44 SVTTSYPGASPEEVEQLVTKPLEEALSSVEGVKEIRSTSREGSSSITVEFDDG-TDIDEALQEVREKIDQIRSDLPPGVE 122 (1021)
T ss_dssp EEEEE-TTS-HHHHHHHTHHHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTT-S-HHHHHHHHHHHHHHHGGGS-HHHH
T ss_pred EEEEecCcCCHHHHHHHHHHHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccc-cCHHHHHHHHHHHHHhhhhhCccccc
Confidence 344556666533 345678999999999999998877776665 45554 3443 455555554211 11111
Q ss_pred ccCC--CCCCCCcceeeeeeeccc----cC----hhhhhhHHhhhcCCCCceeeeeec-CCCeEEEEeCCCC-----CCH
Q 001896 116 ESST--SGPKPQGTIVGQYTIGGM----TC----AACVNSVEGILRGLPGVKRAVVAL-ATSLGEVEYDPTV-----ISK 179 (998)
Q Consensus 116 ~~~~--~~~~~~~~~~~~l~i~gm----~C----~~C~~~ie~~l~~~~GV~~~~v~~-~~~~~~v~~d~~~-----~~~ 179 (998)
...- ........ ..+.+.+- +- .-..+.++..|++++||.++.+.= ..+.+.|.+||++ +++
T Consensus 123 ~p~i~~~~~~~~~i--~~~~l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~ 200 (1021)
T PF00873_consen 123 EPQIFKFDPSDSPI--MILALTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSL 200 (1021)
T ss_dssp HHEEEEEEEECCEE--EEEEEEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--H
T ss_pred CCceeeccCCCcee--EEEEeccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCH
Confidence 0000 00011111 22333332 21 123467899999999999999864 5568899999864 688
Q ss_pred HHHHHHHHhcCCce
Q 001896 180 DDIANAIEDAGFEA 193 (998)
Q Consensus 180 ~~i~~~i~~~G~~~ 193 (998)
.++.++|++.....
T Consensus 201 ~~v~~~l~~~n~~~ 214 (1021)
T PF00873_consen 201 SDVAQALQANNVNQ 214 (1021)
T ss_dssp HHHHHHHHHHSCEE
T ss_pred HHHHHHHHHhhhhc
Confidence 89999998776544
No 188
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=90.52 E-value=0.91 Score=53.59 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=66.2
Q ss_pred eEEEEEECCeEEEEE----EecC-----CCcHhHHHHHHHHHhCCCEEEEEcCCCH------------HHHHHHHHHhCc
Q 001896 785 TGILVAYDDNLIGVM----GIAD-----PVKREAAVVVEGLLKMGVRPVMVTGDNW------------RTAHAVAREIGI 843 (998)
Q Consensus 785 ~~i~va~~~~~lG~i----~l~d-----~~r~~~~~~i~~l~~~gi~~~i~tgd~~------------~~a~~ia~~~gi 843 (998)
+++++-.|++++-.- ...| -+.|++.+.|+.|++.|++++|+|.-.. ..+..+.+++|+
T Consensus 169 Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgi 248 (526)
T TIGR01663 169 KIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGV 248 (526)
T ss_pred cEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCC
Confidence 567778888776432 1122 1469999999999999999999998655 357788888987
Q ss_pred c-eEEEecC----cccHHHHHHHHhh-c-------CCEEEEEcCCCCCHHHHhcC
Q 001896 844 Q-DVMADVM----PAGKADAVRSFQK-D-------GSIVAMVGDGINDSPALAAA 885 (998)
Q Consensus 844 ~-~~~~~~~----p~~K~~~v~~l~~-~-------g~~v~~vGDg~nD~~al~~A 885 (998)
. .++.... ...+...+..+.+ . ...+.||||...|..+-+.|
T Consensus 249 pfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~a 303 (526)
T TIGR01663 249 PFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAA 303 (526)
T ss_pred ceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhc
Confidence 5 2222111 1122333433322 2 24689999999998765444
No 189
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=90.43 E-value=1.4 Score=38.25 Aligned_cols=65 Identities=34% Similarity=0.542 Sum_probs=52.4
Q ss_pred eeeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCcee
Q 001896 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEAS 194 (998)
Q Consensus 130 ~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~ 194 (998)
..+.+.++.|..|...++..+...+++.....+.......+.+++.......+...+++.||..+
T Consensus 25 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 89 (92)
T TIGR02052 25 VTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSS 89 (92)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeE
Confidence 35678999999999999999999999988899988888888776654566666666677888754
No 190
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=89.60 E-value=0.23 Score=49.94 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=53.8
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec---------CcccH--HHHHHHHhhcCCEEEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAGK--ADAVRSFQKDGSIVAMV 872 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~---------~p~~K--~~~v~~l~~~g~~v~~v 872 (998)
++.|++.++++ ++.++|+-+........+++|+..+|..+ .|+.. ..+.+.+.-..+.++||
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~v 162 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMV 162 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeE
Confidence 57899999998 36899999999999999999987544321 12221 23444444445679999
Q ss_pred cCCCCCHHHHhcC
Q 001896 873 GDGINDSPALAAA 885 (998)
Q Consensus 873 GDg~nD~~al~~A 885 (998)
||+..|+.+.+++
T Consensus 163 gD~~~Di~~A~~~ 175 (175)
T TIGR01493 163 AAHQWDLIGARKF 175 (175)
T ss_pred ecChhhHHHHhcC
Confidence 9999999886653
No 191
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=89.08 E-value=2 Score=46.85 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=63.2
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHH---HHHHHhCcceEEEecCcccHHHHHHH
Q 001896 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH---AVAREIGIQDVMADVMPAGKADAVRS 861 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~---~ia~~~gi~~~~~~~~p~~K~~~v~~ 861 (998)
+.+.+-.||++.. .+.+-|++.++|++|++.|++++++||....+.. .-.+++|++.-..++.+.. ....+.
T Consensus 3 ~~~~~D~DGtl~~----~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~-~~~~~~ 77 (279)
T TIGR01452 3 QGFIFDCDGVLWL----GERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSA-LCAARL 77 (279)
T ss_pred cEEEEeCCCceEc----CCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHH-HHHHHH
Confidence 3455666776643 5677889999999999999999999996543332 3346678753222221111 123344
Q ss_pred Hhh---cCCEEEEEcCCCCCHHHHhcCCeEEE
Q 001896 862 FQK---DGSIVAMVGDGINDSPALAAADVGMA 890 (998)
Q Consensus 862 l~~---~g~~v~~vGDg~nD~~al~~A~vgia 890 (998)
|++ .+.+|.++|+. .....++.+++-+.
T Consensus 78 l~~~~~~~~~v~~iG~~-~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 78 LRQPPDAPKAVYVIGEE-GLRAELDAAGIRLA 108 (279)
T ss_pred HHhhCcCCCEEEEEcCH-HHHHHHHHCCCEEe
Confidence 444 35789999985 34556777776654
No 192
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=88.43 E-value=1.1 Score=49.98 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=35.1
Q ss_pred cHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHh-C
Q 001896 806 KREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREI-G 842 (998)
Q Consensus 806 r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~-g 842 (998)
.|++.++++.|+++|+++.++|+.+...+..+.+.+ |
T Consensus 186 ~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 186 DPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred chhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 589999999999999999999999999999999996 7
No 193
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=88.42 E-value=1 Score=48.46 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=50.1
Q ss_pred eEEEEEECCeEEEEEEecCC--Cc-HhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEE
Q 001896 785 TGILVAYDDNLIGVMGIADP--VK-REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM 847 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~--~r-~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~ 847 (998)
+++++..|++++-- +.+ +| |++.+++++|+++|++++++|+.+...+..+.+.+|+..+|
T Consensus 129 ~~i~~D~D~TL~~~---~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 129 HVIVFDLDSTLITD---EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred cEEEEecCCCccCC---CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 46777788887654 444 45 99999999999999999999988888889999999998543
No 194
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=88.42 E-value=1.1 Score=46.89 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=66.7
Q ss_pred CcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec---------CcccHH--HHHHHHhhcCCEEEEEc
Q 001896 805 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAGKA--DAVRSFQKDGSIVAMVG 873 (998)
Q Consensus 805 ~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~---------~p~~K~--~~v~~l~~~g~~v~~vG 873 (998)
+-++..++++.||+.|..+.++|.=.... +.+-..+|+..+|.-+ .|+.+. ..++.+..+.+.++++|
T Consensus 114 ~~~~~~~~lq~lR~~g~~l~iisN~d~r~-~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIg 192 (237)
T KOG3085|consen 114 YLDGMQELLQKLRKKGTILGIISNFDDRL-RLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIG 192 (237)
T ss_pred eccHHHHHHHHHHhCCeEEEEecCCcHHH-HHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEec
Confidence 33556699999999998899998633322 3677777876443322 344442 35666666778899999
Q ss_pred CC-CCCHHHHhcCC-eEEEecCchHHHHHhc
Q 001896 874 DG-INDSPALAAAD-VGMAIGAGTDIAIEAA 902 (998)
Q Consensus 874 Dg-~nD~~al~~A~-vgia~~~~~~~~~~~a 902 (998)
|. .||..+.++++ .++-+.++....++..
T Consensus 193 D~l~nD~~gA~~~G~~ailv~~~~~~~~~~~ 223 (237)
T KOG3085|consen 193 DLLENDYEGARNLGWHAILVDNSITALKELE 223 (237)
T ss_pred CccccccHhHHHcCCEEEEEccccchhhhhh
Confidence 98 89999999988 5677766554444433
No 195
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=88.25 E-value=0.57 Score=46.45 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=62.8
Q ss_pred ecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce-EEEec-----CcccHHHHHHHHh---hcCCEEEE
Q 001896 801 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-VMADV-----MPAGKADAVRSFQ---KDGSIVAM 871 (998)
Q Consensus 801 l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~-~~~~~-----~p~~K~~~v~~l~---~~g~~v~~ 871 (998)
+.=..||++.+.++.|.+. +++++.|......|..+.+.++... ++... ....|...++.|. ....+|.|
T Consensus 39 ~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIi 117 (162)
T TIGR02251 39 VYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVII 117 (162)
T ss_pred EEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEE
Confidence 3445799999999999987 9999999999999999999999764 33221 1111222344443 33467999
Q ss_pred EcCCCCCHHHHhcCCeEE
Q 001896 872 VGDGINDSPALAAADVGM 889 (998)
Q Consensus 872 vGDg~nD~~al~~A~vgi 889 (998)
|||...|..+-+.+++-|
T Consensus 118 VDD~~~~~~~~~~NgI~i 135 (162)
T TIGR02251 118 IDNSPYSYSLQPDNAIPI 135 (162)
T ss_pred EeCChhhhccCccCEeec
Confidence 999999887655555443
No 196
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=86.85 E-value=0.64 Score=48.95 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=56.7
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHH---HHHHHHHHhCcc---eEEEec-Cc-c------cHHHHHHHHhhcC-CE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWR---TAHAVAREIGIQ---DVMADV-MP-A------GKADAVRSFQKDG-SI 868 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~---~a~~ia~~~gi~---~~~~~~-~p-~------~K~~~v~~l~~~g-~~ 868 (998)
+.-|++.+.++.++++|++|+++||++.. .+..=.++.|+. .++-+- .+ . -|...-+.++++| +.
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~I 194 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYRI 194 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEEE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCCcE
Confidence 45588999999999999999999997644 344445667874 233222 22 2 2777888888885 47
Q ss_pred EEEEcCCCCCHHH
Q 001896 869 VAMVGDGINDSPA 881 (998)
Q Consensus 869 v~~vGDg~nD~~a 881 (998)
++++||..+|...
T Consensus 195 i~~iGD~~~D~~~ 207 (229)
T PF03767_consen 195 IANIGDQLSDFSG 207 (229)
T ss_dssp EEEEESSGGGCHC
T ss_pred EEEeCCCHHHhhc
Confidence 8999999999764
No 197
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.26 E-value=12 Score=44.03 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=31.6
Q ss_pred CCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEecc
Q 001896 444 KVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGT 483 (998)
Q Consensus 444 r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~ 483 (998)
||| ...++|..-||.||||-++||+.-||.+.=.+|+
T Consensus 162 RDG---hlm~lP~~LLVeGDiIa~RPGQeafan~~g~~dd 198 (1354)
T KOG4383|consen 162 RDG---HLMELPRILLVEGDIIAFRPGQEAFANCEGFDDD 198 (1354)
T ss_pred ccC---eeeecceeEEEeccEEEecCCccccccccccCCC
Confidence 667 4688999999999999999999999987666553
No 198
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=85.45 E-value=1.4 Score=42.76 Aligned_cols=86 Identities=23% Similarity=0.265 Sum_probs=60.1
Q ss_pred CcHhHHHHHHHHHhCCCEEEEEcCCCHH----HHHHHHHHhCcce----EEEecCcc-cHHHHHHHHhhcCCEEEEEcCC
Q 001896 805 VKREAAVVVEGLLKMGVRPVMVTGDNWR----TAHAVAREIGIQD----VMADVMPA-GKADAVRSFQKDGSIVAMVGDG 875 (998)
Q Consensus 805 ~r~~~~~~i~~l~~~gi~~~i~tgd~~~----~a~~ia~~~gi~~----~~~~~~p~-~K~~~v~~l~~~g~~v~~vGDg 875 (998)
+++-+++.|..=++.|-.++.+||+... ++..+|+.+.|.+ .|+.-.|. .+-.-...+++++- -.+-||+
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~~qy~Kt~~i~~~~~-~IhYGDS 193 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKPGQYTKTQWIQDKNI-RIHYGDS 193 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCCCcccccccHHHHhcCc-eEEecCC
Confidence 4566788888889999999999998754 4667777777763 34443331 11223455566665 4577999
Q ss_pred CCCHHHHhcCCe-EEEe
Q 001896 876 INDSPALAAADV-GMAI 891 (998)
Q Consensus 876 ~nD~~al~~A~v-gia~ 891 (998)
-||+.|.+.|++ ||-+
T Consensus 194 D~Di~AAkeaG~RgIRi 210 (237)
T COG3700 194 DNDITAAKEAGARGIRI 210 (237)
T ss_pred chhhhHHHhcCccceeE
Confidence 999999999984 4544
No 199
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=85.03 E-value=5.4 Score=42.58 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=53.0
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHH---HHHHHHHhCcce---EEEecCc--------ccHHHHHHHHhhcCC
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRT---AHAVAREIGIQD---VMADVMP--------AGKADAVRSFQKDGS 867 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~---a~~ia~~~gi~~---~~~~~~p--------~~K~~~v~~l~~~g~ 867 (998)
+.|.-|++.+..+.+++.|++++++||+.... +..=.++.|+.. .+-+-.. +-|...-+.+.++|.
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGY 222 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGY 222 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCc
Confidence 45667899999999999999999999998543 222234568753 2322111 114444455555665
Q ss_pred -EEEEEcCCCCCHH
Q 001896 868 -IVAMVGDGINDSP 880 (998)
Q Consensus 868 -~v~~vGDg~nD~~ 880 (998)
.++.+||..+|..
T Consensus 223 rIv~~iGDq~sDl~ 236 (275)
T TIGR01680 223 NIVGIIGDQWNDLK 236 (275)
T ss_pred eEEEEECCCHHhcc
Confidence 7899999999973
No 200
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=85.00 E-value=3.2 Score=41.28 Aligned_cols=79 Identities=13% Similarity=0.243 Sum_probs=55.8
Q ss_pred CcHhHHHHHHHHHhCCCEEEEEc-CCCHHHHHHHHHHhCcc----------eEE--EecCcccHHHHHHHHhhc----CC
Q 001896 805 VKREAAVVVEGLLKMGVRPVMVT-GDNWRTAHAVAREIGIQ----------DVM--ADVMPAGKADAVRSFQKD----GS 867 (998)
Q Consensus 805 ~r~~~~~~i~~l~~~gi~~~i~t-gd~~~~a~~ia~~~gi~----------~~~--~~~~p~~K~~~v~~l~~~----g~ 867 (998)
+.|+++++|+.|++.|+++.++| -+.+..|+++.+.+++. ++| .++-|..|..-.+.++++ -+
T Consensus 46 lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y~ 125 (169)
T PF12689_consen 46 LYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPYE 125 (169)
T ss_dssp --TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH---GG
T ss_pred eCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCChh
Confidence 57999999999999999999999 57889999999999998 544 456788898888877764 24
Q ss_pred EEEEEcCCCCCHHHHh
Q 001896 868 IVAMVGDGINDSPALA 883 (998)
Q Consensus 868 ~v~~vGDg~nD~~al~ 883 (998)
.++++=|-.......+
T Consensus 126 eMlFFDDe~~N~~~v~ 141 (169)
T PF12689_consen 126 EMLFFDDESRNIEVVS 141 (169)
T ss_dssp GEEEEES-HHHHHHHH
T ss_pred HEEEecCchhcceeeE
Confidence 5788877655444433
No 201
>PTZ00445 p36-lilke protein; Provisional
Probab=84.80 E-value=2.6 Score=42.97 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHcCCeEEEEEECCeEEEEE--EecCC----------CcHhHHHHHHHHHhCCCEEEEEcC-CCHH-----
Q 001896 771 HVESFVVELEESARTGILVAYDDNLIGVM--GIADP----------VKREAAVVVEGLLKMGVRPVMVTG-DNWR----- 832 (998)
Q Consensus 771 ~~~~~~~~~~~~g~~~i~va~~~~~lG~i--~l~d~----------~r~~~~~~i~~l~~~gi~~~i~tg-d~~~----- 832 (998)
......+.+.+.|-+++++-.|.++++.- +..++ ++|+.+..+++|++.||++.++|= |...
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~ 109 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSEN 109 (219)
T ss_pred HHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccC
Confidence 34556677899999999999999988711 12333 799999999999999999999994 4333
Q ss_pred ---------HHHHHHHHhCc----ceEEEec----------------Ccc--cHHH----HHHHHhhcCCEEEEEcCCCC
Q 001896 833 ---------TAHAVAREIGI----QDVMADV----------------MPA--GKAD----AVRSFQKDGSIVAMVGDGIN 877 (998)
Q Consensus 833 ---------~a~~ia~~~gi----~~~~~~~----------------~p~--~K~~----~v~~l~~~g~~v~~vGDg~n 877 (998)
.+....+.-+. ..+++-- .|+ -|.- +++...-..+.++++=|...
T Consensus 110 ~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~ 189 (219)
T PTZ00445 110 RPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMN 189 (219)
T ss_pred CcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHH
Confidence 34444443332 2333321 222 2222 22333333567999999999
Q ss_pred CHHHHhcCCe
Q 001896 878 DSPALAAADV 887 (998)
Q Consensus 878 D~~al~~A~v 887 (998)
.+.+.++.|+
T Consensus 190 NVeaA~~lGi 199 (219)
T PTZ00445 190 NCKNALKEGY 199 (219)
T ss_pred HHHHHHHCCC
Confidence 9998888764
No 202
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=84.65 E-value=1.4e+02 Score=38.82 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=83.2
Q ss_pred EEEeCCCCC----hhHHHHHHHhhcCCCCeeEEEEeeccc--EEEEEECCCCCChH----HHHHHHHhcCccc-hhcccc
Q 001896 49 QVGVTGMTC----AACSNSVEGALMGLKGVAKASVALLQN--KADVVFDPDLVKDE----DIKNAIEDAGFEA-EILAES 117 (998)
Q Consensus 49 ~~~v~gm~C----~~C~~~ie~~l~~~~gv~~~~v~l~~~--~~~v~~~~~~~~~~----~i~~~i~~~Gy~~-~~~~~~ 117 (998)
+-.-+|-+- ..-...||++++.++|+.+++-.-..+ .+++.++.+ .+++ ++.+++.++.-.. +.....
T Consensus 47 ~t~ypGAsae~ve~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~-~d~d~A~~~V~~kv~~~~~~LP~~~~~p 125 (1009)
T COG0841 47 SATYPGASAETVEDSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG-TDPDTAAVQVQNKIQQAESRLPSGVQQP 125 (1009)
T ss_pred EEecCCCCHHHHHHHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC-CChHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 334455442 456688999999999998777654444 455566544 3444 6666666554221 001100
Q ss_pred CCCCCCCCcceeeeeeecc--ccCh----hhhhhHHhhhcCCCCceeeeeecC-CCeEEEEeCCCC-----CCHHHHHHH
Q 001896 118 STSGPKPQGTIVGQYTIGG--MTCA----ACVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKDDIANA 185 (998)
Q Consensus 118 ~~~~~~~~~~~~~~l~i~g--m~C~----~C~~~ie~~l~~~~GV~~~~v~~~-~~~~~v~~d~~~-----~~~~~i~~~ 185 (998)
.-...+....-...+.+.. +.-. --...++..|.+++||.++++.=. ...+.|..||.+ .++.++.++
T Consensus 126 ~v~~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~a 205 (1009)
T COG0841 126 GVTVEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSA 205 (1009)
T ss_pred ceEeccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHH
Confidence 0000001111112222222 3211 124668889999999999998755 668899999964 678899999
Q ss_pred HHhcCCc
Q 001896 186 IEDAGFE 192 (998)
Q Consensus 186 i~~~G~~ 192 (998)
|++....
T Consensus 206 i~~qN~~ 212 (1009)
T COG0841 206 IRAQNVQ 212 (1009)
T ss_pred HHHhCcc
Confidence 9865443
No 203
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=84.14 E-value=11 Score=40.43 Aligned_cols=66 Identities=12% Similarity=0.150 Sum_probs=53.0
Q ss_pred HHHHcCCeEEEEEECCeEEEEEEe--cCCCcHhHHHHHHHHHhC-CCEEEEEcCCCHHHHHHHHHHhCc
Q 001896 778 ELEESARTGILVAYDDNLIGVMGI--ADPVKREAAVVVEGLLKM-GVRPVMVTGDNWRTAHAVAREIGI 843 (998)
Q Consensus 778 ~~~~~g~~~i~va~~~~~lG~i~l--~d~~r~~~~~~i~~l~~~-gi~~~i~tgd~~~~a~~ia~~~gi 843 (998)
.+.....+.+.+-|||++...+.. ...+.++..++++.|... ...++|+||++.........-.|+
T Consensus 12 ~~~~a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i 80 (266)
T COG1877 12 PYLNARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGI 80 (266)
T ss_pred ccccccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCc
Confidence 344556778999999988877766 556778999999999888 457999999999998888875555
No 204
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=83.86 E-value=2.3 Score=45.03 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=29.5
Q ss_pred EEECCeEEEEEEe--cCCCcHhHHHHHHHHHhCC-CEEEEEcCCCHHHHHHHHHHhCc
Q 001896 789 VAYDDNLIGVMGI--ADPVKREAAVVVEGLLKMG-VRPVMVTGDNWRTAHAVAREIGI 843 (998)
Q Consensus 789 va~~~~~lG~i~l--~d~~r~~~~~~i~~l~~~g-i~~~i~tgd~~~~a~~ia~~~gi 843 (998)
+-|||++..+..- .-.+.+++.+++++|.+.. ..++|+||++.........--++
T Consensus 2 lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~~~~~i 59 (235)
T PF02358_consen 2 LDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFGGIPNI 59 (235)
T ss_dssp EE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-S-SS-
T ss_pred cccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhcCCCCc
Confidence 4567776666553 3355689999999998764 57999999999986555443333
No 205
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=82.39 E-value=5 Score=43.77 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=50.5
Q ss_pred CcHhHHHHHHHHHhCCCEEEEEcCCCHHHHH----------H----HHHHhCcceEE-EecCcccHHHHHHHHhhcCCEE
Q 001896 805 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAH----------A----VAREIGIQDVM-ADVMPAGKADAVRSFQKDGSIV 869 (998)
Q Consensus 805 ~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~----------~----ia~~~gi~~~~-~~~~p~~K~~~v~~l~~~g~~v 869 (998)
-.+++.++++.|++.|+ ..++|+.+..... . +....|-.... ..-+|+-=..+++.+....+++
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 36899999999999897 6777764432110 1 11111211111 1111111122344444446789
Q ss_pred EEEcCCC-CCHHHHhcCC---eEEEec
Q 001896 870 AMVGDGI-NDSPALAAAD---VGMAIG 892 (998)
Q Consensus 870 ~~vGDg~-nD~~al~~A~---vgia~~ 892 (998)
+||||.. .|+.+-++|+ +++..|
T Consensus 223 lmIGD~~~tDI~~A~~aGi~si~V~~G 249 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMTTVLVLSG 249 (279)
T ss_pred EEECCChHHHHHHHHHcCCcEEEECCC
Confidence 9999995 9999999999 444455
No 206
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=82.39 E-value=2.1 Score=44.74 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=42.6
Q ss_pred EEEECCeEEEEEEecCC-CcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc
Q 001896 788 LVAYDDNLIGVMGIADP-VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 844 (998)
Q Consensus 788 ~va~~~~~lG~i~l~d~-~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~ 844 (998)
+.-.||+++. .+. ..+.++++|++|++.|++++++||++...+..+.+.+|++
T Consensus 3 ~~DlDGTLL~----~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 3 FSDLDGTLLD----SHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEeCCCCCcC----CCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3344666553 233 4445899999999999999999999999999999999976
No 207
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=80.89 E-value=9.5 Score=40.98 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=69.6
Q ss_pred EEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHh----Ccc----eEEEecCcccHHHHHHHHhhc--
Q 001896 796 IGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREI----GIQ----DVMADVMPAGKADAVRSFQKD-- 865 (998)
Q Consensus 796 lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~----gi~----~~~~~~~p~~K~~~v~~l~~~-- 865 (998)
=|++...+.+-|++.++|+.|+++|++++++|..+..+...+++++ |++ .++..- ....+.+++.
T Consensus 16 DGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~-----~at~~~l~~~~~ 90 (269)
T COG0647 16 DGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSG-----DATADYLAKQKP 90 (269)
T ss_pred cCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHH-----HHHHHHHHhhCC
Confidence 3666788999999999999999999999999988776666555443 332 122211 1123333333
Q ss_pred CCEEEEEcCCCCCHHHHhcCCeEEEecCchHHHHHhcCEEEecCC
Q 001896 866 GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNS 910 (998)
Q Consensus 866 g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~ 910 (998)
+.+|.++|.+ .+...++.+++-+.-..... ..|+++...+
T Consensus 91 ~~kv~viG~~-~l~~~l~~~G~~~~~~~~~~----~~d~Vv~g~d 130 (269)
T COG0647 91 GKKVYVIGEE-GLKEELEGAGFELVDEEEPA----RVDAVVVGLD 130 (269)
T ss_pred CCEEEEECCc-chHHHHHhCCcEEeccCCCC----cccEEEEecC
Confidence 3689999954 56678888888777642221 1577776543
No 208
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=80.06 E-value=7.7 Score=37.91 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=62.0
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHH---HHHHHHh-----Ccce---EEE--------------ecCcccHH
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTA---HAVAREI-----GIQD---VMA--------------DVMPAGKA 856 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a---~~ia~~~-----gi~~---~~~--------------~~~p~~K~ 856 (998)
.|..++++.+..+.+++.|++++-+|+++...+ +...+.. +++. .++ +-.-+.|.
T Consensus 25 ~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~al~rEvi~~~p~~fK~ 104 (157)
T PF08235_consen 25 KDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFSALHREVISKDPEEFKI 104 (157)
T ss_pred chhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchhhhhhccccccChHHHHH
Confidence 468899999999999999999999999986554 3334444 4431 111 11223588
Q ss_pred HHHHHHhhc-----CCEEEEEcCCCCCHHHHhcCCeE
Q 001896 857 DAVRSFQKD-----GSIVAMVGDGINDSPALAAADVG 888 (998)
Q Consensus 857 ~~v~~l~~~-----g~~v~~vGDg~nD~~al~~A~vg 888 (998)
..++.++.. ..-.+..|...+|+.+-+++++.
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 888888764 23567788888999999888764
No 209
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=79.81 E-value=2.8 Score=41.66 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=41.3
Q ss_pred hhhhhhHHhhhcCCCCceeeeeecCCCe-------------------EEEEeCCCCCCHHHHHHHH
Q 001896 140 AACVNSVEGILRGLPGVKRAVVALATSL-------------------GEVEYDPTVISKDDIANAI 186 (998)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~~-------------------~~v~~d~~~~~~~~i~~~i 186 (998)
++|-|-+|..+.+++||.++.+-+..+. +.|.|||..++.++|++..
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f 75 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELF 75 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHH
Confidence 5788999999999999999988877664 8899999999999998855
No 210
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=77.78 E-value=14 Score=26.63 Aligned_cols=58 Identities=48% Similarity=0.788 Sum_probs=39.1
Q ss_pred EeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCc
Q 001896 51 GVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGF 109 (998)
Q Consensus 51 ~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy 109 (998)
.+.++.|..|...++..+...+++.....++......+.++.. .....+...+...|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 60 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPE-VSPEELLEAIEDAGY 60 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCC-CCHHHHHHHHHHcCC
Confidence 4678999999999999988888887777777776666655432 233333333344443
No 211
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=77.06 E-value=12 Score=26.95 Aligned_cols=58 Identities=48% Similarity=0.879 Sum_probs=41.5
Q ss_pred eeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCC
Q 001896 133 TIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGF 191 (998)
Q Consensus 133 ~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~ 191 (998)
.+.++.|..|...++..+...+++.....++......+.++.. .....+...+...|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 60 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPE-VSPEELLEAIEDAGY 60 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCC-CCHHHHHHHHHHcCC
Confidence 3568899999999998888888988778888777777777553 344444444444444
No 212
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=76.99 E-value=9.4 Score=38.30 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=55.1
Q ss_pred CcHhHHHHHHHHHhCCCEEEEEcCCC---------------HHHHHHHHHHhC--cceE-EEecCccc-------HHH-H
Q 001896 805 VKREAAVVVEGLLKMGVRPVMVTGDN---------------WRTAHAVAREIG--IQDV-MADVMPAG-------KAD-A 858 (998)
Q Consensus 805 ~r~~~~~~i~~l~~~gi~~~i~tgd~---------------~~~a~~ia~~~g--i~~~-~~~~~p~~-------K~~-~ 858 (998)
+.+++.+++..|+++|++++|+|.-+ ......+.+..| ++.+ ++.-.|++ |.- +
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~ 111 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGML 111 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHH
Confidence 45899999999999999999998622 111223334455 3332 33333332 222 3
Q ss_pred HHHHhhcC---CEEEEEcCCCCCHHHHhcCCeE
Q 001896 859 VRSFQKDG---SIVAMVGDGINDSPALAAADVG 888 (998)
Q Consensus 859 v~~l~~~g---~~v~~vGDg~nD~~al~~A~vg 888 (998)
.+.+++.+ ....||||-..|..+..++++.
T Consensus 112 ~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 112 LSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred HHHHHHhCCCccceEEecCcHHHHHHHHHCCCC
Confidence 34444433 6789999999999999999877
No 213
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=76.33 E-value=2.2 Score=35.96 Aligned_cols=54 Identities=30% Similarity=0.423 Sum_probs=35.2
Q ss_pred HHHHHhhcCCEEEEEcCC-CCCHHHHhcCCeE-EEe--cCc-hHHH---HHhcCEEEecCChhH
Q 001896 858 AVRSFQKDGSIVAMVGDG-INDSPALAAADVG-MAI--GAG-TDIA---IEAADYVLMRNSLED 913 (998)
Q Consensus 858 ~v~~l~~~g~~v~~vGDg-~nD~~al~~A~vg-ia~--~~~-~~~~---~~~ad~vl~~~~~~~ 913 (998)
+.+.+.....+++||||. ..|+.+-+++++- |.+ |.. .+.. ...+|+|+ +++..
T Consensus 13 a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv--~~l~e 74 (75)
T PF13242_consen 13 ALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVV--DDLKE 74 (75)
T ss_dssp HHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEE--SSGGG
T ss_pred HHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEE--CCHHh
Confidence 444444445679999999 9999999999943 444 422 2222 25788887 55543
No 214
>PRK09577 multidrug efflux protein; Reviewed
Probab=74.87 E-value=1e+02 Score=40.38 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=80.9
Q ss_pred EEEEEeCCCCChh----HHHHHHHhhcCCCCeeEEEEeecccE--EEEEECCCCCCh----HHHHHHHHhcC--ccchhc
Q 001896 47 RIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQNK--ADVVFDPDLVKD----EDIKNAIEDAG--FEAEIL 114 (998)
Q Consensus 47 ~~~~~v~gm~C~~----C~~~ie~~l~~~~gv~~~~v~l~~~~--~~v~~~~~~~~~----~~i~~~i~~~G--y~~~~~ 114 (998)
.+...-+|.+-.. -...+|++|+.++|+++++..-..+. +.+.++.+ .+. .++.+.+++.. +.....
T Consensus 44 ~V~t~~pGasp~~VE~~Vt~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g-~d~~~a~~~V~~~v~~~~~~LP~~~~ 122 (1032)
T PRK09577 44 SIYATYPGASAQVVEESVTALIEREMNGAPGLLYTSATSSAGQASLSLTFKQG-VNADLAAVEVQNRLKTVEARLPEPVR 122 (1032)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHHhCCcccc
Confidence 3444555665433 44678889999999998776554444 44456544 233 34555555431 111100
Q ss_pred cccCCC-CCCCCcceeeeeeecc--ccCh---h-hhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCC-----CCHHHH
Q 001896 115 AESSTS-GPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISKDDI 182 (998)
Q Consensus 115 ~~~~~~-~~~~~~~~~~~l~i~g--m~C~---~-C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~-----~~~~~i 182 (998)
.+.... .........+.+..++ .+-. . -.+.++..|++++||.+++++-....+.|..||.+ ++..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V 202 (1032)
T PRK09577 123 RDGIQVEKAADNIQLIVSLTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDI 202 (1032)
T ss_pred cCCceEeccCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHH
Confidence 000000 0000001112222221 1111 1 24678999999999999999876667778788854 688899
Q ss_pred HHHHHhcCCc
Q 001896 183 ANAIEDAGFE 192 (998)
Q Consensus 183 ~~~i~~~G~~ 192 (998)
.++|+..+.+
T Consensus 203 ~~~l~~~n~~ 212 (1032)
T PRK09577 203 ASAVRAHNAR 212 (1032)
T ss_pred HHHHHHhCCc
Confidence 9999876544
No 215
>PRK13748 putative mercuric reductase; Provisional
Probab=74.00 E-value=10 Score=45.98 Aligned_cols=64 Identities=27% Similarity=0.510 Sum_probs=51.6
Q ss_pred EEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchhc
Q 001896 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (998)
Q Consensus 50 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (998)
+.+.||+|++|..+++..+...+++....+++..+...+.+++ ......+...+++.||..++.
T Consensus 4 i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~-~~~~~~i~~~i~~~g~~~~~~ 67 (561)
T PRK13748 4 LKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEV-GTSPDALTAAVAGLGYRATLA 67 (561)
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECC-CCCHHHHHHHHHHcCCeeecc
Confidence 6689999999999999999999999999999988887777653 245566666678888876543
No 216
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=73.96 E-value=1.5e+02 Score=38.81 Aligned_cols=140 Identities=16% Similarity=0.240 Sum_probs=80.9
Q ss_pred EEEEeCCCCCh----hHHHHHHHhhcCCCCeeEEEEeec-c--cEEEEEECCCCCCh----HHHHHHHHhc--Cccchhc
Q 001896 48 IQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALL-Q--NKADVVFDPDLVKD----EDIKNAIEDA--GFEAEIL 114 (998)
Q Consensus 48 ~~~~v~gm~C~----~C~~~ie~~l~~~~gv~~~~v~l~-~--~~~~v~~~~~~~~~----~~i~~~i~~~--Gy~~~~~ 114 (998)
+...-+|.+-. .-...+|++++.++|+++++-.-. . ..+.+.++.+ .+. .++.+.+.++ .++...-
T Consensus 45 V~t~ypGasp~~vE~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g-~d~~~a~~~V~~~v~~~~~~LP~~v~ 123 (1037)
T PRK10555 45 ITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAG-TDPDEAVQQVQNQLQSAMRKLPQAVQ 123 (1037)
T ss_pred EEEecCCCCHHHHHHHHhHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECC-CCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 34444665533 345678899999999999887432 3 4456667555 243 3455555543 1211100
Q ss_pred cccCCCCCCCCcceeeeeee---cc-ccCh----hhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCC-----CCHHH
Q 001896 115 AESSTSGPKPQGTIVGQYTI---GG-MTCA----ACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISKDD 181 (998)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~i---~g-m~C~----~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~-----~~~~~ 181 (998)
.+.... ..........+.+ +| ++-. --++.++..|++++||.+++++-....+.|..||++ ++..+
T Consensus 124 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~ 202 (1037)
T PRK10555 124 NQGVTV-RKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKD 202 (1037)
T ss_pred cCCceE-eCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHH
Confidence 000000 0000011223333 22 2211 124678889999999999999866677899999864 68889
Q ss_pred HHHHHHhc
Q 001896 182 IANAIEDA 189 (998)
Q Consensus 182 i~~~i~~~ 189 (998)
+.++|++.
T Consensus 203 v~~al~~~ 210 (1037)
T PRK10555 203 VTDAIESQ 210 (1037)
T ss_pred HHHHHHHh
Confidence 99999864
No 217
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=73.90 E-value=2e+02 Score=37.84 Aligned_cols=141 Identities=14% Similarity=0.194 Sum_probs=79.7
Q ss_pred EEEEEeCCCCChh----HHHHHHHhhcCCCCeeEEEEee-cc--cEEEEEECCCCCCh----HHHHHHHHhc--Cccchh
Q 001896 47 RIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVAL-LQ--NKADVVFDPDLVKD----EDIKNAIEDA--GFEAEI 113 (998)
Q Consensus 47 ~~~~~v~gm~C~~----C~~~ie~~l~~~~gv~~~~v~l-~~--~~~~v~~~~~~~~~----~~i~~~i~~~--Gy~~~~ 113 (998)
.+...-+|.+-.. -...+|++++.++|++++...- .. ....+.++.+ .+. +++.+.+... .+....
T Consensus 44 ~V~~~~pGas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~-~d~~~a~~~v~~~l~~~~~~LP~~~ 122 (1044)
T TIGR00915 44 TVSASYPGASAQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQG-TDPDIAQVQVQNKLQLATPLLPQEV 122 (1044)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHhhCCCcc
Confidence 3445556665332 3456788899999999887643 23 3455556444 232 3455555543 122110
Q ss_pred ccccCCCCCCCCcceeeeeeecc----ccCh----hhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCC-----CCHH
Q 001896 114 LAESSTSGPKPQGTIVGQYTIGG----MTCA----ACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISKD 180 (998)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~l~i~g----m~C~----~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~-----~~~~ 180 (998)
-.+..... .........+.+.+ .+-. .-.+.++..|++++||.++++.-..+.+.|..||++ +++.
T Consensus 123 ~~~~~~~~-~~~~~~~~~i~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~ 201 (1044)
T TIGR00915 123 QRQGVRVE-KASSNFLMVIGLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPA 201 (1044)
T ss_pred cCCCcEEe-CCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHH
Confidence 00000000 00000112233322 1111 123568899999999999999877777999999864 6888
Q ss_pred HHHHHHHhc
Q 001896 181 DIANAIEDA 189 (998)
Q Consensus 181 ~i~~~i~~~ 189 (998)
++.++|++.
T Consensus 202 dV~~~i~~~ 210 (1044)
T TIGR00915 202 DVISAIQAQ 210 (1044)
T ss_pred HHHHHHHHh
Confidence 999999864
No 218
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=73.88 E-value=5.9 Score=38.67 Aligned_cols=47 Identities=23% Similarity=0.486 Sum_probs=39.9
Q ss_pred hhhhhhHHhhhcCCCCceeeeeecCCC--------------eEEEEeCCCCCCHHHHHHHH
Q 001896 140 AACVNSVEGILRGLPGVKRAVVALATS--------------LGEVEYDPTVISKDDIANAI 186 (998)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~--------------~~~v~~d~~~~~~~~i~~~i 186 (998)
++|-|-+|..+.+++||.++++-+..+ .+.|.|||..++.++|++..
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f 68 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYL 68 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHH
Confidence 578888999999999999988766542 37899999999999998855
No 219
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=73.69 E-value=1.8e+02 Score=38.15 Aligned_cols=140 Identities=14% Similarity=0.187 Sum_probs=80.8
Q ss_pred EEEEeCCCCCh----hHHHHHHHhhcCCCCeeEEEEeec-c--cEEEEEECCCCCChH----HHHHHHHhcC--ccchhc
Q 001896 48 IQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALL-Q--NKADVVFDPDLVKDE----DIKNAIEDAG--FEAEIL 114 (998)
Q Consensus 48 ~~~~v~gm~C~----~C~~~ie~~l~~~~gv~~~~v~l~-~--~~~~v~~~~~~~~~~----~i~~~i~~~G--y~~~~~ 114 (998)
+...-+|.+-. .-...+|++++.++|+++++..-. . ..+.+.++.+ .+.+ ++.+.+..+. ++...-
T Consensus 45 V~t~ypGasp~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g-~d~~~a~~~V~~~i~~~~~~LP~~~~ 123 (1049)
T PRK15127 45 ISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESG-TDADIAQVQVQNKLQLAMPLLPQEVQ 123 (1049)
T ss_pred EEEEeCCCCHHHHHHHhhHHHHHHhcCCCCceEEEEEecCCceEEEEEEEECC-CChHHHHHHHHHHHHHHHhhCCCccc
Confidence 44445555532 345678889999999999886542 3 3466667654 3443 5556666442 221110
Q ss_pred cccCCCCCCCCcceeeeeeecc----ccC-hh---hhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCC-----CCHHH
Q 001896 115 AESSTSGPKPQGTIVGQYTIGG----MTC-AA---CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISKDD 181 (998)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~i~g----m~C-~~---C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~-----~~~~~ 181 (998)
.+..... .........+.+.+ ++- .- -.+.++..|++++||.++++.-..+.+.|..||.+ +++.+
T Consensus 124 ~~~~~~~-~~~~~~v~~~~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~ 202 (1049)
T PRK15127 124 QQGVSVE-KSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVD 202 (1049)
T ss_pred CCCcEEe-cCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHH
Confidence 0000000 00000112223321 111 11 23568899999999999998866677999999864 68889
Q ss_pred HHHHHHhc
Q 001896 182 IANAIEDA 189 (998)
Q Consensus 182 i~~~i~~~ 189 (998)
+.++++..
T Consensus 203 V~~~l~~~ 210 (1049)
T PRK15127 203 VINAIKAQ 210 (1049)
T ss_pred HHHHHHHh
Confidence 99999855
No 220
>PRK13748 putative mercuric reductase; Provisional
Probab=72.70 E-value=9.8 Score=46.15 Aligned_cols=66 Identities=27% Similarity=0.533 Sum_probs=54.7
Q ss_pred eeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec
Q 001896 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ 197 (998)
Q Consensus 131 ~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~~ 197 (998)
.+.++++.|++|..+++..+...+++.....++..+...+.+++. .+...+...+++.||...+..
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g~~~~~~~ 68 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLGYRATLAD 68 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcCCeeeccC
Confidence 356889999999999999999999999999999999988888653 566777777788999876543
No 221
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=72.09 E-value=1e+02 Score=33.14 Aligned_cols=111 Identities=14% Similarity=0.248 Sum_probs=71.8
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEE-EEEcCCC-HHHHHHHHHHhC-cceEEE
Q 001896 772 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRP-VMVTGDN-WRTAHAVAREIG-IQDVMA 848 (998)
Q Consensus 772 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~-~i~tgd~-~~~a~~ia~~~g-i~~~~~ 848 (998)
++++.+.+.+.|-..+ .+-|.+-++..+.++.+++.|+.. .+++-.. ......+++... +.-+.+
T Consensus 108 ~e~F~~~~~~aGvdgv------------iipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS 175 (263)
T CHL00200 108 INKFIKKISQAGVKGL------------IIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVS 175 (263)
T ss_pred HHHHHHHHHHcCCeEE------------EecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEc
Confidence 4566777777775533 457777799999999999999985 4566554 567777887764 433323
Q ss_pred ec--------CcccHHHHHHHHhhcCCEEEEEcCCCCCHHHH---hcCCe-EEEecCc
Q 001896 849 DV--------MPAGKADAVRSFQKDGSIVAMVGDGINDSPAL---AAADV-GMAIGAG 894 (998)
Q Consensus 849 ~~--------~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al---~~A~v-gia~~~~ 894 (998)
+. .+++-.+.++.+++.-..-.++|-|+|+.... ..++. |+-+|++
T Consensus 176 ~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 176 TTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 21 23344567777777656667789999955443 33322 5555543
No 222
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=71.79 E-value=19 Score=38.01 Aligned_cols=115 Identities=19% Similarity=0.259 Sum_probs=68.5
Q ss_pred CCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc----eEEEec-----------------CcccHHH-HH-
Q 001896 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----DVMADV-----------------MPAGKAD-AV- 859 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~----~~~~~~-----------------~p~~K~~-~v- 859 (998)
-.+|+++.+.++.|++.++.+.|.|+--......+.++.|.. ++.++. -+-.|-. .+
T Consensus 89 i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l~ 168 (246)
T PF05822_consen 89 IMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESALE 168 (246)
T ss_dssp --B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHHT
T ss_pred hhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccccc
Confidence 458999999999999999999999987777777777777753 222221 1112332 22
Q ss_pred -----HHHhhcCCEEEEEcCCCCCHHHHhcC---CeEEEec--Cc-----hHHHHHhcCEEEecCChhHHHHHH
Q 001896 860 -----RSFQKDGSIVAMVGDGINDSPALAAA---DVGMAIG--AG-----TDIAIEAADYVLMRNSLEDVIIAI 918 (998)
Q Consensus 860 -----~~l~~~g~~v~~vGDg~nD~~al~~A---~vgia~~--~~-----~~~~~~~ad~vl~~~~~~~l~~~i 918 (998)
+.++ ....|...||..-|+.|.... +.-+.+| +. -+.-+++-|+|+.+|.--.++..|
T Consensus 169 ~~~~~~~~~-~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv~D~tm~v~~~i 241 (246)
T PF05822_consen 169 DSPYFKQLK-KRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLVDDQTMDVPNAI 241 (246)
T ss_dssp THHHHHCTT-T--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEET--B-HHHHHH
T ss_pred CchHHHHhc-cCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEECCCCchHHHHH
Confidence 2222 234699999999999997655 4445555 32 235668899999988644454443
No 223
>PLN02423 phosphomannomutase
Probab=70.85 E-value=6.8 Score=41.76 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=34.4
Q ss_pred cHHHHHHHHhhcCCEEEEEcC----CCCCHHHHhc-CCeEEEecC
Q 001896 854 GKADAVRSFQKDGSIVAMVGD----GINDSPALAA-ADVGMAIGA 893 (998)
Q Consensus 854 ~K~~~v~~l~~~g~~v~~vGD----g~nD~~al~~-A~vgia~~~ 893 (998)
+|...++.|+ ..+.|+++|| |.||.+||+. -=.++++.+
T Consensus 189 nKg~al~~L~-~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 189 DKTYCLQFLE-DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS 232 (245)
T ss_pred CHHHHHHHhc-CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence 7999999999 7889999999 8999999997 557888853
No 224
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=70.33 E-value=77 Score=40.11 Aligned_cols=71 Identities=8% Similarity=0.037 Sum_probs=53.2
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEec-----CCCcHhHHHHHHHHHhC-CCEEEEEcCCCHHHHHHHHHHhC
Q 001896 772 VESFVVELEESARTGILVAYDDNLIGVMGIA-----DPVKREAAVVVEGLLKM-GVRPVMVTGDNWRTAHAVAREIG 842 (998)
Q Consensus 772 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~-----d~~r~~~~~~i~~l~~~-gi~~~i~tgd~~~~a~~ia~~~g 842 (998)
.......+.....+.+.+.|||++.....-. -.+.+++.++++.|.+. +-.|+|+||++.....+.....+
T Consensus 495 ~~~~~~~y~~a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~ 571 (797)
T PLN03063 495 EQDVIQQYSKSNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYN 571 (797)
T ss_pred HHHHHHHHHhccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCC
Confidence 3455667777778999999999998532211 12668899999999876 67899999999988877775433
No 225
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=70.31 E-value=6 Score=39.77 Aligned_cols=47 Identities=26% Similarity=0.553 Sum_probs=40.6
Q ss_pred hhhhhhHHhhhcCCCCceeeeeecCCCe-------------------EEEEeCCCCCCHHHHHHHH
Q 001896 140 AACVNSVEGILRGLPGVKRAVVALATSL-------------------GEVEYDPTVISKDDIANAI 186 (998)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~~-------------------~~v~~d~~~~~~~~i~~~i 186 (998)
++|-|-+|..+.+++||.++++-+..+. +.|.|||..++.++|++..
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~F 80 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIF 80 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHH
Confidence 5788889999999999999988776653 8899999999999998855
No 226
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=69.95 E-value=6.5 Score=40.35 Aligned_cols=47 Identities=32% Similarity=0.528 Sum_probs=40.8
Q ss_pred hhhhhhHHhhhcCCCCceeeeeecCCC-------------------eEEEEeCCCCCCHHHHHHHH
Q 001896 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAI 186 (998)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~i 186 (998)
++|-|-+|..+.+++||.++++-+..+ .+.|.|||..++.++|++..
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~F 117 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVF 117 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHH
Confidence 578888999999999999999887733 48899999999999998855
No 227
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=69.22 E-value=1.9e+02 Score=37.99 Aligned_cols=142 Identities=13% Similarity=0.186 Sum_probs=80.9
Q ss_pred EEEEEeCCCCChh----HHHHHHHhhcCCCCeeEEEEeecccEE--EEEECCCCCCh----HHHHHHHHhcC--ccchhc
Q 001896 47 RIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQNKA--DVVFDPDLVKD----EDIKNAIEDAG--FEAEIL 114 (998)
Q Consensus 47 ~~~~~v~gm~C~~----C~~~ie~~l~~~~gv~~~~v~l~~~~~--~v~~~~~~~~~----~~i~~~i~~~G--y~~~~~ 114 (998)
.+...-+|.+-.. -...+|++|+.++||++++..-..+.. .+.++.+ .+. .++.+.+.+.- ......
T Consensus 55 ~V~t~~pGas~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g-~d~~~a~~ev~~~i~~~~~~LP~~~~ 133 (1040)
T PRK10503 55 QVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLT-LPLDVAEQEVQAAINAATNLLPSDLP 133 (1040)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHHhCCCccC
Confidence 3445667776544 456788899999999998876555544 4455544 233 45555555431 110000
Q ss_pred cccCCCCCCCCcceeeeeeecc--ccCh---h-hhhhHHhhhcCCCCceeeeeecC-CCeEEEEeCCCC-----CCHHHH
Q 001896 115 AESSTSGPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKDDI 182 (998)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~i~g--m~C~---~-C~~~ie~~l~~~~GV~~~~v~~~-~~~~~v~~d~~~-----~~~~~i 182 (998)
.+...............+.+.+ ..=. . -.+.++..|++++||.++.+.-. ...+.|.+|+++ +++.++
T Consensus 134 ~~p~~~~~~~~~~pv~~~~l~~~~~~~~~L~~~~~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v 213 (1040)
T PRK10503 134 NPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETV 213 (1040)
T ss_pred CCCEEEEeCCCCCceEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHH
Confidence 0000000000001112333322 1100 1 12578899999999999988743 468999999864 678899
Q ss_pred HHHHHhc
Q 001896 183 ANAIEDA 189 (998)
Q Consensus 183 ~~~i~~~ 189 (998)
.++|+..
T Consensus 214 ~~ai~~~ 220 (1040)
T PRK10503 214 RTAITGA 220 (1040)
T ss_pred HHHHHHh
Confidence 9988764
No 228
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=68.93 E-value=28 Score=33.39 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=59.8
Q ss_pred HHHHcCCeEEEEEE--------------CCeEEEEEEecCCCcHhHHHHHHHHHhCCC-EE-EEEcCCC------HHHHH
Q 001896 778 ELEESARTGILVAY--------------DDNLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDN------WRTAH 835 (998)
Q Consensus 778 ~~~~~g~~~i~va~--------------~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi-~~-~i~tgd~------~~~a~ 835 (998)
-+...|++++++.. +-.++|+-.+.....+.+++.++.|++.|. .+ +++-|.. +....
T Consensus 26 ~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~ 105 (137)
T PRK02261 26 ALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVE 105 (137)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHH
Confidence 45667777777754 346888888888999999999999999965 23 4555543 45566
Q ss_pred HHHHHhCcceEEEecCcccHHHHHHHHhh
Q 001896 836 AVAREIGIQDVMADVMPAGKADAVRSFQK 864 (998)
Q Consensus 836 ~ia~~~gi~~~~~~~~p~~K~~~v~~l~~ 864 (998)
..++++|++.+|..-+|-+ +++..+++
T Consensus 106 ~~l~~~G~~~vf~~~~~~~--~i~~~l~~ 132 (137)
T PRK02261 106 KKFKEMGFDRVFPPGTDPE--EAIDDLKK 132 (137)
T ss_pred HHHHHcCCCEEECcCCCHH--HHHHHHHH
Confidence 7889999999998544433 34444443
No 229
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=68.77 E-value=19 Score=38.11 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=53.4
Q ss_pred EEEEecCCCcHhHHHHHHHHHhCCCEEEEEc---CCCHHHHHHHHHH-hCcceEEEecCcccH----HHHHHHHhh--cC
Q 001896 797 GVMGIADPVKREAAVVVEGLLKMGVRPVMVT---GDNWRTAHAVARE-IGIQDVMADVMPAGK----ADAVRSFQK--DG 866 (998)
Q Consensus 797 G~i~l~d~~r~~~~~~i~~l~~~gi~~~i~t---gd~~~~a~~ia~~-~gi~~~~~~~~p~~K----~~~v~~l~~--~g 866 (998)
|++.-.+.+-|++.++|+.++++|+++.++| |.+.........+ +|++ ++|++= ....+.+++ .+
T Consensus 7 GvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~-----~~~~~iits~~~~~~~l~~~~~~ 81 (236)
T TIGR01460 7 GVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD-----VSPDQIITSGSVTKDLLRQRFEG 81 (236)
T ss_pred CccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC-----CCHHHeeeHHHHHHHHHHHhCCC
Confidence 3344456778899999999999999999998 5555554443444 6764 222221 122333433 35
Q ss_pred CEEEEEcCCCCCHHHHhcCCe
Q 001896 867 SIVAMVGDGINDSPALAAADV 887 (998)
Q Consensus 867 ~~v~~vGDg~nD~~al~~A~v 887 (998)
.+|..+|.. .....++.+++
T Consensus 82 ~~v~v~G~~-~~~~~l~~~g~ 101 (236)
T TIGR01460 82 EKVYVIGVG-ELRESLEGLGF 101 (236)
T ss_pred CEEEEECCH-HHHHHHHHcCC
Confidence 679999974 45556666554
No 230
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=67.73 E-value=4.5 Score=43.05 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=49.2
Q ss_pred cHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcc------------eEEEecCcccH--HHHHHHHhhc-CCEEE
Q 001896 806 KREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ------------DVMADVMPAGK--ADAVRSFQKD-GSIVA 870 (998)
Q Consensus 806 r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~------------~~~~~~~p~~K--~~~v~~l~~~-g~~v~ 870 (998)
.++..++++.|++.|++. ++|+.+...+.......|.. ... .-.|+.. ..+.+.+... .++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~-~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIY-SGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEec-CCCCCHHHHHHHHHHcCCCCcccEE
Confidence 589999999999899997 77876554443222222221 111 1112211 1233333222 34799
Q ss_pred EEcCC-CCCHHHHhcCCeE
Q 001896 871 MVGDG-INDSPALAAADVG 888 (998)
Q Consensus 871 ~vGDg-~nD~~al~~A~vg 888 (998)
||||. .+|+.+-++|++-
T Consensus 218 ~vGD~~~~Di~~a~~~G~~ 236 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGID 236 (242)
T ss_pred EECCCcHHHHHHHHHCCCe
Confidence 99999 5999999998865
No 231
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=67.27 E-value=2e+02 Score=31.57 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=48.8
Q ss_pred hhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHH-HHHHHhcCCceee-ec-cCCccceeeeecCccchhh
Q 001896 140 AACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDI-ANAIEDAGFEASF-VQ-SSGQDKILLQVTGVLCELD 216 (998)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i-~~~i~~~G~~~~~-~~-~~~~~~~~~~v~gm~c~~c 216 (998)
..|.+.+++.+++.+||++++.- +.++- .+..+..|+.... .+ ++-+....+++.- +..
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~~---------------sre~~l~~L~~~lg~~~~~~l~~nPLP~~~vV~~~~---p~~ 132 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRFI---------------SREEALKELQPWLGFGALLMLDENPLPDVFVVTPDD---PPQ 132 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEEe---------------CHHHHHHHHHHHcCchhhhcCCCCCCCceEEEEeCC---Ccc
Confidence 88999999999999999987652 33443 3444567875111 11 2223444444433 566
Q ss_pred hhHHHhhhhcCCCceeE
Q 001896 217 AHFLEGILSNFKGVRQF 233 (998)
Q Consensus 217 a~~ie~~l~~~~GV~~~ 233 (998)
...+.+.+++++||.+|
T Consensus 133 ~~~i~~~l~~l~gV~~V 149 (297)
T COG2177 133 VKAIAAALRDLPGVAEV 149 (297)
T ss_pred HHHHHHHHHcCccceeh
Confidence 77778888888888665
No 232
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=66.70 E-value=20 Score=38.54 Aligned_cols=102 Identities=17% Similarity=0.269 Sum_probs=65.6
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHH---HhCcceEEEecCcccHHHHHH
Q 001896 784 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR---EIGIQDVMADVMPAGKADAVR 860 (998)
Q Consensus 784 ~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~---~~gi~~~~~~~~p~~K~~~v~ 860 (998)
..++.+..| |++...+.+-|++.++++.|+++|.++.++|..+..+-+..++ ++|+.++-.+--...=..+..
T Consensus 22 ~DtfifDcD----GVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a~ 97 (306)
T KOG2882|consen 22 FDTFIFDCD----GVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSSAYAIAD 97 (306)
T ss_pred cCEEEEcCC----cceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccChHHHHHH
Confidence 444555444 4566688889999999999999999999999988777777665 467653222211112234555
Q ss_pred HHhhc---CCEEEEEc-CCCCCHHHHhcCCeEEEe
Q 001896 861 SFQKD---GSIVAMVG-DGINDSPALAAADVGMAI 891 (998)
Q Consensus 861 ~l~~~---g~~v~~vG-Dg~nD~~al~~A~vgia~ 891 (998)
.|++. +++|..+| +|+++ -|+.|++-...
T Consensus 98 ylk~~~~~~k~Vyvig~~gi~~--eL~~aG~~~~g 130 (306)
T KOG2882|consen 98 YLKKRKPFGKKVYVIGEEGIRE--ELDEAGFEYFG 130 (306)
T ss_pred HHHHhCcCCCeEEEecchhhhH--HHHHcCceeec
Confidence 55443 46777776 44555 45666644433
No 233
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=65.36 E-value=14 Score=34.69 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=36.3
Q ss_pred EEEEEECCeEEEEE--E-ecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHH
Q 001896 786 GILVAYDDNLIGVM--G-IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH 835 (998)
Q Consensus 786 ~i~va~~~~~lG~i--~-l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~ 835 (998)
.+++-.||+++--= . ..+++.+++.++++.+++.|+.++++||++.....
T Consensus 3 ~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 3 RLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred EEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 35555666664110 0 12568899999999999999999999999876644
No 234
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=65.17 E-value=42 Score=31.96 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=48.3
Q ss_pred CCeEEEEEEecCCCcHhHHHHHHHHHhCCCE--EEEEcCCC---HHH---HHHHHHHhCcceEEEecCcccHHHHHHHHh
Q 001896 792 DDNLIGVMGIADPVKREAAVVVEGLLKMGVR--PVMVTGDN---WRT---AHAVAREIGIQDVMADVMPAGKADAVRSFQ 863 (998)
Q Consensus 792 ~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~--~~i~tgd~---~~~---a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~ 863 (998)
+-.++|+=++--.--+..+++++.|+++|++ .+++=|-. ... ...-++++|++.+|..-+|- .+++..++
T Consensus 52 ~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~--~~iv~~l~ 129 (134)
T TIGR01501 52 KADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPP--EVVIADLK 129 (134)
T ss_pred CCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCH--HHHHHHHH
Confidence 3456777777777788899999999999873 45565631 111 24467999999999865543 34555555
Q ss_pred h
Q 001896 864 K 864 (998)
Q Consensus 864 ~ 864 (998)
+
T Consensus 130 ~ 130 (134)
T TIGR01501 130 K 130 (134)
T ss_pred H
Confidence 4
No 235
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=63.90 E-value=31 Score=35.93 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=52.7
Q ss_pred CcHhHHHHHHHHHhCCCEEEEEcCCCHHH----HHHHHHHhCcceEEEe-----cCcccHHHHHHHHhhcCCEEEEEcCC
Q 001896 805 VKREAAVVVEGLLKMGVRPVMVTGDNWRT----AHAVAREIGIQDVMAD-----VMPAGKADAVRSFQKDGSIVAMVGDG 875 (998)
Q Consensus 805 ~r~~~~~~i~~l~~~gi~~~i~tgd~~~~----a~~ia~~~gi~~~~~~-----~~p~~K~~~v~~l~~~g~~v~~vGDg 875 (998)
+-||+.+.++..-+.|..+.-+|.+.... +..=.++.|++.+--. -....|..--+..++.-..|+.|||.
T Consensus 123 ~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~k~Ke~R~~~v~k~~~iVm~vGDN 202 (274)
T COG2503 123 AVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDKKSKEVRRQAVEKDYKIVMLVGDN 202 (274)
T ss_pred cCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCCCcHHHHHHHHhhccceeeEecCc
Confidence 44889999999999999999999876665 4555566788642211 11223433444444556789999999
Q ss_pred CCCHHHH
Q 001896 876 INDSPAL 882 (998)
Q Consensus 876 ~nD~~al 882 (998)
.+|-...
T Consensus 203 l~DF~d~ 209 (274)
T COG2503 203 LDDFGDN 209 (274)
T ss_pred hhhhcch
Confidence 9986543
No 236
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=62.27 E-value=74 Score=31.86 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=78.7
Q ss_pred ecCCCcHhHHHHHHHH-HhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhcCCEEEEEcCC--CC
Q 001896 801 IADPVKREAAVVVEGL-LKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDG--IN 877 (998)
Q Consensus 801 l~d~~r~~~~~~i~~l-~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg--~n 877 (998)
+.+..-+++.+..+++ .+.|.++++..| .+|..+.+.++++-+--..+..|=.+.++..++.+.+++++|.. ..
T Consensus 14 v~~~~~e~~v~~a~~~~~~~g~dViIsRG---~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~ 90 (176)
T PF06506_consen 14 VIEASLEEAVEEARQLLESEGADVIISRG---GTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIP 90 (176)
T ss_dssp EEE--HHHHHHHHHHHHTTTT-SEEEEEH---HHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SC
T ss_pred EEEecHHHHHHHHHHhhHhcCCeEEEECC---HHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccH
Confidence 3444557778888888 888999999987 47777888888887777777777777777777777788877765 33
Q ss_pred CHHHHh--------------------------cCCeEEEecCc--hHHHH-HhcCEEEecCChhHHHHHHHHHHHHHHHH
Q 001896 878 DSPALA--------------------------AADVGMAIGAG--TDIAI-EAADYVLMRNSLEDVIIAIDLSRKTFARI 928 (998)
Q Consensus 878 D~~al~--------------------------~A~vgia~~~~--~~~~~-~~ad~vl~~~~~~~l~~~i~~~r~~~~~i 928 (998)
|...+. ..++.+-+|++ .+.++ .--..++...+-+++..++..|+++.+..
T Consensus 91 ~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~sg~esi~~Al~eA~~i~~~~ 170 (176)
T PF06506_consen 91 GLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIESGEESIRRALEEALRIARAR 170 (176)
T ss_dssp CHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHHHHHH
Confidence 333322 22344444421 22222 23345667778999999999999998877
Q ss_pred HH
Q 001896 929 RL 930 (998)
Q Consensus 929 ~~ 930 (998)
++
T Consensus 171 ~~ 172 (176)
T PF06506_consen 171 RR 172 (176)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 237
>PLN02591 tryptophan synthase
Probab=62.15 E-value=87 Score=33.41 Aligned_cols=110 Identities=18% Similarity=0.299 Sum_probs=70.4
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEE-EEcCCC-HHHHHHHHHHh-CcceEEE
Q 001896 772 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPV-MVTGDN-WRTAHAVAREI-GIQDVMA 848 (998)
Q Consensus 772 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~-i~tgd~-~~~a~~ia~~~-gi~~~~~ 848 (998)
.+++.+...+.|-..+.+ -|-+-++..+..+.+++.|+..+ ++|-.. ....+.+++.. |+..+.+
T Consensus 95 ~~~F~~~~~~aGv~Gvii------------pDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs 162 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVV------------PDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVS 162 (250)
T ss_pred HHHHHHHHHHcCCCEEEe------------CCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEee
Confidence 455666777777543322 36666999999999999999865 555555 35567777765 4433323
Q ss_pred ec--------CcccHHHHHHHHhhcCCEEEEEcCCCC---CHHHHhcC-CeEEEecC
Q 001896 849 DV--------MPAGKADAVRSFQKDGSIVAMVGDGIN---DSPALAAA-DVGMAIGA 893 (998)
Q Consensus 849 ~~--------~p~~K~~~v~~l~~~g~~v~~vGDg~n---D~~al~~A-~vgia~~~ 893 (998)
+. .|.+-.+.++.+++....-.++|-|++ |+..+... -=|+-+|+
T Consensus 163 ~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 163 STGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 21 244555678888887677788999999 44444443 23455554
No 238
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=61.74 E-value=23 Score=35.28 Aligned_cols=50 Identities=16% Similarity=0.359 Sum_probs=42.0
Q ss_pred hhHHHHHHHhhcCCCCeeEEEEeecccE-------------------EEEEECCCCCChHHHHHHHHhc
Q 001896 58 AACSNSVEGALMGLKGVAKASVALLQNK-------------------ADVVFDPDLVKDEDIKNAIEDA 107 (998)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~l~~~~-------------------~~v~~~~~~~~~~~i~~~i~~~ 107 (998)
++|=|.+|....+++||.++.+-...+. +.|.||+..++.+++.+..=+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~ 78 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQI 78 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 7899999999999999999998665553 7788999999999988866543
No 239
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=60.21 E-value=14 Score=36.18 Aligned_cols=48 Identities=35% Similarity=0.556 Sum_probs=39.7
Q ss_pred hhhhhhHHhhhcCCCCceeeeeecCCC-------------------eEEEEeCCCCCCHHHHHHHHH
Q 001896 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIE 187 (998)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~i~ 187 (998)
++|-|-.|..+.+++||.++.+-+..+ -+.|.|||..++.++|++..=
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~ 73 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFF 73 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHH
Confidence 578888999999999999998876544 578999999999999988653
No 240
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=59.79 E-value=35 Score=28.12 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=40.7
Q ss_pred eeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 001896 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (998)
Q Consensus 131 ~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~ 195 (998)
.+.+.|..|+...-++.+++++++.= +.+.|..|.. ...++|...+++.||....
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~-~~~~di~~~~~~~g~~~~~ 56 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDP-AAVEDIPRWCEENGYEVVE 56 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESST-THHHHHHHHHHHHTEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCc-cHHHHHHHHHHHCCCEEEE
Confidence 46778999999999999999987432 3455555544 3578999999999998543
No 241
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=59.32 E-value=14 Score=36.29 Aligned_cols=47 Identities=34% Similarity=0.568 Sum_probs=39.3
Q ss_pred hhhhhhHHhhhcCCCCceeeeeecCCC-------------------eEEEEeCCCCCCHHHHHHHH
Q 001896 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAI 186 (998)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~i 186 (998)
++|-|=+|+...+++||.++.+-++.+ .+.|.|||..++.++|++..
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~f 78 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVF 78 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHH
Confidence 578888999999999999987765433 57899999999999998865
No 242
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=59.10 E-value=52 Score=31.06 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=55.6
Q ss_pred HHHcCCeEEEEEE--------------CCeEEEEEEecCCCcHhHHHHHHHHHhCCC-EE-EEEcCCCH------HHHHH
Q 001896 779 LEESARTGILVAY--------------DDNLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNW------RTAHA 836 (998)
Q Consensus 779 ~~~~g~~~i~va~--------------~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi-~~-~i~tgd~~------~~a~~ 836 (998)
++..|+.++.+.. +-.++|+=++.-.--+..+++++.|+++|+ .+ +++-|-.. .....
T Consensus 23 L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~ 102 (128)
T cd02072 23 FTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEK 102 (128)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHH
Confidence 4556666665543 446888888888888999999999999998 55 44444421 33446
Q ss_pred HHHHhCcceEEEecCcccHHHHHHHHh
Q 001896 837 VAREIGIQDVMADVMPAGKADAVRSFQ 863 (998)
Q Consensus 837 ia~~~gi~~~~~~~~p~~K~~~v~~l~ 863 (998)
..+++|++.+|..=+| -.+++..|+
T Consensus 103 ~L~~~Gv~~vf~pgt~--~~~i~~~l~ 127 (128)
T cd02072 103 RFKEMGFDRVFAPGTP--PEEAIADLK 127 (128)
T ss_pred HHHHcCCCEEECcCCC--HHHHHHHHh
Confidence 6888999998874332 223454443
No 243
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=58.64 E-value=1.4e+02 Score=38.65 Aligned_cols=170 Identities=12% Similarity=0.076 Sum_probs=77.3
Q ss_pred eEEEEeCCCCCCCCEEEEcCCCcccccEEEEeccee-eecccccCcCcccccCCCCceecceeeeeceEEEEEEEecChh
Q 001896 450 EEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDA 528 (998)
Q Consensus 450 ~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~~~-Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t 528 (998)
....+..-+.+|.|.++++. +..-+|=-.+.|++. ++-. .|+.. .-..|..+..|.... .+...-..|--..
T Consensus 188 DiV~l~~Gd~IPaD~~li~g-~~l~VdES~LTGES~pv~K~--~~~~n--~v~~GT~v~~G~~~~--iV~~tG~~T~~gk 260 (941)
T TIGR01517 188 DIVSLSTGDVVPADGVFISG-LSLEIDESSITGESDPIKKG--APKDS--FLLSGTVVNEGSGRM--LVTAVGVNSFGGK 260 (941)
T ss_pred CEEEECCCCEecccEEEEEc-CcEEEEecccCCCCCccccc--CCCCc--eEEeCCeEEeeEEEE--EEEEeCCCcHHHH
Confidence 35678888999999999864 344455555555553 2221 12110 124566666665322 1111111110000
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCC--CCCcccCCCCccHHHHHHHHhhhhh
Q 001896 529 VLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGA--YPEQWLPENGTHFVFALMFSISVVV 606 (998)
Q Consensus 529 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~isvlv 606 (998)
.. +..+..++...-...+.+..+.+..+.+.+++++.++.++.|++...... .+..+.......+..++...++...
T Consensus 261 i~-~~~~~~~~~t~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP 339 (941)
T TIGR01517 261 LM-MELRAEGEDTPLQEKLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVP 339 (941)
T ss_pred HH-HhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCC
Confidence 00 00000001111122334445555554444444333333332222100000 0000000012346777888888888
Q ss_pred hhccccchhhHHHHHHHHHHH
Q 001896 607 IACPCALGLATPTAVMVATGV 627 (998)
Q Consensus 607 ~~~P~aL~la~p~~~~~~~~~ 627 (998)
.+.|.+.++++..+.....+.
T Consensus 340 ~~Lp~~vti~l~~~~~~mak~ 360 (941)
T TIGR01517 340 EGLPLAVTIALAYSMKKMMKD 360 (941)
T ss_pred CchHHHHHHHHHHHHHHHHhC
Confidence 888888888888887665543
No 244
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=58.44 E-value=5.5e+02 Score=33.73 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=80.2
Q ss_pred eEEEEEeCCCCChhHH----HHHHHhhcCCCCeeEEEEeecccEEE--EEECCCCCCh----HHHHHHHHhc--Cccchh
Q 001896 46 RRIQVGVTGMTCAACS----NSVEGALMGLKGVAKASVALLQNKAD--VVFDPDLVKD----EDIKNAIEDA--GFEAEI 113 (998)
Q Consensus 46 ~~~~~~v~gm~C~~C~----~~ie~~l~~~~gv~~~~v~l~~~~~~--v~~~~~~~~~----~~i~~~i~~~--Gy~~~~ 113 (998)
-.+...-+|.+-...+ ..+|++++.++||++++..-..+... +.++.+ .+. .++.+.+.+. .+....
T Consensus 45 v~V~~~~pGas~~~ve~~vt~piE~~l~~i~gv~~i~S~s~~G~s~i~l~f~~~-~d~~~a~~~v~~~v~~~~~~LP~~~ 123 (1025)
T PRK10614 45 IMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILQFDFD-RDINGAARDVQAAINAAQSLLPSGM 123 (1025)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHhhCCCcc
Confidence 3445556676655444 66799999999999998755555444 455444 233 3455555543 121110
Q ss_pred ccccCCCCCCCCcceeeeeeeccc--cCh-h---hhhhHHhhhcCCCCceeeeeecC-CCeEEEEeCCCC-----CCHHH
Q 001896 114 LAESSTSGPKPQGTIVGQYTIGGM--TCA-A---CVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKDD 181 (998)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~l~i~gm--~C~-~---C~~~ie~~l~~~~GV~~~~v~~~-~~~~~v~~d~~~-----~~~~~ 181 (998)
..................+.+.+- +-. - -.+.++..|++++||.++.+.-. ...++|..||++ ++..+
T Consensus 124 ~~~p~~~~~~~~~~pv~~~~~~~~~~~~~~L~~~~~~~l~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~d 203 (1025)
T PRK10614 124 PSRPTYRKANPSDAPIMILTLTSDTYSQGQLYDFASTQLAQTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDD 203 (1025)
T ss_pred CCCCEEEecCCCccceeEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHH
Confidence 000000000000001122333221 111 1 13578999999999999998643 347899999864 67889
Q ss_pred HHHHHHhc
Q 001896 182 IANAIEDA 189 (998)
Q Consensus 182 i~~~i~~~ 189 (998)
+.++|+..
T Consensus 204 V~~al~~~ 211 (1025)
T PRK10614 204 VRQAISNA 211 (1025)
T ss_pred HHHHHHHh
Confidence 99999865
No 245
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=58.15 E-value=2.6e+02 Score=29.94 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=62.6
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEE-EcCCC-HHHHHHHHHHh-CcceEEE
Q 001896 772 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVM-VTGDN-WRTAHAVAREI-GIQDVMA 848 (998)
Q Consensus 772 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i-~tgd~-~~~a~~ia~~~-gi~~~~~ 848 (998)
.+++.+...+.|-..+.+ -|-+-++..+.++.+++.|+..+. +|-.. .+....+++.. |+..+.+
T Consensus 106 ~e~f~~~~~~aGvdGvii------------pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs 173 (258)
T PRK13111 106 VERFAADAAEAGVDGLII------------PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVS 173 (258)
T ss_pred HHHHHHHHHHcCCcEEEE------------CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 345666667766543332 366668999999999999998654 77665 45666677664 3322212
Q ss_pred e--------cCcccHHHHHHHHhhcCCEEEEEcCCCCCHH
Q 001896 849 D--------VMPAGKADAVRSFQKDGSIVAMVGDGINDSP 880 (998)
Q Consensus 849 ~--------~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~ 880 (998)
. -.|.+-.+.++.+++....-.++|-|+++..
T Consensus 174 ~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e 213 (258)
T PRK13111 174 RAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPE 213 (258)
T ss_pred CCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHH
Confidence 1 1233445688888876666677899996543
No 246
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=55.07 E-value=23 Score=34.38 Aligned_cols=47 Identities=30% Similarity=0.520 Sum_probs=38.9
Q ss_pred hhhhhhHHhhhcCCCCceeeeeecC-------------------CCeEEEEeCCCCCCHHHHHHHH
Q 001896 140 AACVNSVEGILRGLPGVKRAVVALA-------------------TSLGEVEYDPTVISKDDIANAI 186 (998)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~-------------------~~~~~v~~d~~~~~~~~i~~~i 186 (998)
++|-|-+|....+++||.++.+-+. .+.+.|.|||..++.++|++..
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f 72 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVF 72 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHH
Confidence 5788889999999999998877543 3356799999999999998855
No 247
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.73 E-value=41 Score=31.39 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=43.5
Q ss_pred CeEEEEEEecCCCcHhHHHHHHHHHhCCC-EE-EEEcCCCHHHHHHHHHHhCcceEEEecCc
Q 001896 793 DNLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNWRTAHAVAREIGIQDVMADVMP 852 (998)
Q Consensus 793 ~~~lG~i~l~d~~r~~~~~~i~~l~~~gi-~~-~i~tgd~~~~a~~ia~~~gi~~~~~~~~p 852 (998)
-.++++-.......+.+++.++.|+++|. ++ +++-|.....-....++.|++.+|..=++
T Consensus 51 ~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 51 VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCC
Confidence 35666666778888999999999999977 44 45556555544666778999887764443
No 248
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=54.46 E-value=19 Score=40.18 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=55.6
Q ss_pred EEEEecCCCcHhHHHHHHHHHhC----CCEEEEEcCCC---HHH-HHHHHHHhCcceEEEecCccc----HHHHHHHHhh
Q 001896 797 GVMGIADPVKREAAVVVEGLLKM----GVRPVMVTGDN---WRT-AHAVAREIGIQDVMADVMPAG----KADAVRSFQK 864 (998)
Q Consensus 797 G~i~l~d~~r~~~~~~i~~l~~~----gi~~~i~tgd~---~~~-a~~ia~~~gi~~~~~~~~p~~----K~~~v~~l~~ 864 (998)
|++...+++-+++.++++.|++. |+++..+|... ... +..+.+++|++ +.+++ ...+...+++
T Consensus 9 GvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~-----~~~~~i~~s~~~~~~ll~~ 83 (321)
T TIGR01456 9 GVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD-----VSPLQVIQSHSPYKSLVNK 83 (321)
T ss_pred CceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC-----CCHHHHHhhhHHHHHHHHH
Confidence 55566788899999999999998 99999999654 333 55666788874 22222 1122233333
Q ss_pred cCCEEEEEcCCCCCHHHHhcCCeE
Q 001896 865 DGSIVAMVGDGINDSPALAAADVG 888 (998)
Q Consensus 865 ~g~~v~~vGDg~nD~~al~~A~vg 888 (998)
.+.+++++|.+. -...++.+++-
T Consensus 84 ~~~~v~viG~~~-~~~~l~~~G~~ 106 (321)
T TIGR01456 84 YEKRILAVGTGS-VRGVAEGYGFQ 106 (321)
T ss_pred cCCceEEEeChH-HHHHHHHcCCc
Confidence 344689999763 34455555533
No 249
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=53.00 E-value=23 Score=34.81 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=39.6
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce-EE
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-VM 847 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~-~~ 847 (998)
.=.+||++.+.++.|++. +++++.|......|..+.+.++... +|
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F 101 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYF 101 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCee
Confidence 345799999999999965 9999999999999999999999873 55
No 250
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=52.70 E-value=2.2e+02 Score=30.99 Aligned_cols=92 Identities=22% Similarity=0.346 Sum_probs=61.0
Q ss_pred HHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcc---
Q 001896 777 VELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPA--- 853 (998)
Q Consensus 777 ~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~--- 853 (998)
..+...|..++++.-++.-+| +.+.-.|+...+.++ +..+++-+....+...+|+..+++ ++-.++.+
T Consensus 64 va~~qlGg~~~~l~~~~~Qlg----r~Esi~DTArVLsr~----~D~I~~R~~~~~~ve~lA~~s~VP-ViNgLtD~~HP 134 (310)
T COG0078 64 VAATQLGGHAIYLGPGDSQLG----RGESIKDTARVLSRM----VDAIMIRGFSHETLEELAKYSGVP-VINGLTDEFHP 134 (310)
T ss_pred HHHHHcCCCeEEeCCCccccC----CCCcHHHHHHHHHhh----hheEEEecccHHHHHHHHHhCCCc-eEcccccccCc
Confidence 345677888888887776665 444445555555554 456788899999999999999985 45555433
Q ss_pred -cHHHHHHHHhh-----cCCEEEEEcCCCC
Q 001896 854 -GKADAVRSFQK-----DGSIVAMVGDGIN 877 (998)
Q Consensus 854 -~K~~~v~~l~~-----~g~~v~~vGDg~n 877 (998)
|=+.=+-.+++ +|.+++|+|||-|
T Consensus 135 ~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNN 164 (310)
T COG0078 135 CQALADLMTIKEHFGSLKGLKLAYVGDGNN 164 (310)
T ss_pred HHHHHHHHHHHHhcCcccCcEEEEEcCcch
Confidence 32221111222 4789999999955
No 251
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=52.59 E-value=20 Score=38.70 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=40.5
Q ss_pred ChhhhhhHHhhhcCCCCceeeeeecCCC-------------------eEEEEeCCCCCCHHHHHHHH
Q 001896 139 CAACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAI 186 (998)
Q Consensus 139 C~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~i 186 (998)
.++|-|-+|..+.+++||.++++-+..+ .+.|+|||..++.++|++..
T Consensus 133 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F 199 (283)
T PRK05550 133 AGGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVF 199 (283)
T ss_pred ecCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHH
Confidence 3578899999999999999988876544 37899999999999998855
No 252
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=52.42 E-value=5e+02 Score=34.17 Aligned_cols=132 Identities=19% Similarity=0.219 Sum_probs=78.8
Q ss_pred hhHHHHHHHhhcCCCCeeEEEEeec-----------ccEEEEEECCCC------CChHHHHHHHHhc-----Cccchhcc
Q 001896 58 AACSNSVEGALMGLKGVAKASVALL-----------QNKADVVFDPDL------VKDEDIKNAIEDA-----GFEAEILA 115 (998)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~l~-----------~~~~~v~~~~~~------~~~~~i~~~i~~~-----Gy~~~~~~ 115 (998)
...++.+|+.+++.|+|+++..... .+...+.+.+.. .+..++.+.+++. |-......
T Consensus 577 ~~~~~~ve~~L~~~p~V~~v~s~vG~~~~~~~~~~~~~~~~i~L~~~~~r~~~~~~~~~l~~~lr~~l~~~~~~~~~~~~ 656 (1021)
T PF00873_consen 577 DAIVKQVEDILKEDPEVKSVSSRVGRGFSGFNAGPNSASIFINLKPKSERPGSKESIDELIDELRQKLKQLPGARVFVFS 656 (1021)
T ss_dssp HHHHHHHHHHHHTTTTEEEEEEEESECSST--ECTTEEEEEEEE--CTCS-SCCCSHHHHHHHHHHHCCTSTSSEEEEEE
T ss_pred HHHHHHHHHHHHhhhhhhccceEeccccccccCCCcceEEEEEEeecccccccchhHHHHHHHHHHhhhhCCCcceeccc
Confidence 4588999999999999998887543 224445543322 2445666655543 11111111
Q ss_pred ccCCCC--CCCCcceeeeeeeccccChh---hhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCC-------CCCHHHHH
Q 001896 116 ESSTSG--PKPQGTIVGQYTIGGMTCAA---CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPT-------VISKDDIA 183 (998)
Q Consensus 116 ~~~~~~--~~~~~~~~~~l~i~gm~C~~---C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~-------~~~~~~i~ 183 (998)
...... ........+.+.+.|-+=.. =+.++++.+++.+|+.++..+...+.-++..+++ .++.+++.
T Consensus 657 ~~~~~~~~~~~g~~~~i~v~i~G~d~~~L~~~a~~v~~~l~~~pgv~dv~~~~~~~~~el~i~~dreka~~~Gls~~~va 736 (1021)
T PF00873_consen 657 PPDLRGLGSGPGSSAPIQVEIYGDDLEELRKAAEKVKAKLAEIPGVTDVRDDWEDGQPELRIDPDREKAARLGLSPADVA 736 (1021)
T ss_dssp HCSSCCCCSSSSEEEEEEEECSSSCHHHHHHHHHHHHHHHHHSTTEEEEEESSSSBEEEEEEEE-HHHHHHTTB-HHHHH
T ss_pred cccccccccccccceeeeeccCCCCHHHHHHHHHHHHHHHHhCCCcccccccccccCcceEEEecHHHHHHcCCCHHHHH
Confidence 111111 11122234555667765543 4788899999999999999998888766665543 25778888
Q ss_pred HHHHhc
Q 001896 184 NAIEDA 189 (998)
Q Consensus 184 ~~i~~~ 189 (998)
+.++..
T Consensus 737 ~~l~~a 742 (1021)
T PF00873_consen 737 RTLRTA 742 (1021)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 253
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=52.31 E-value=53 Score=42.49 Aligned_cols=119 Identities=20% Similarity=0.291 Sum_probs=76.0
Q ss_pred hhhHHhhhcCCCCceeeeeecC--CCeEEEEeCCCCCCHH----HHHHHHHhcC--Cceeee-------ccCCccceeee
Q 001896 143 VNSVEGILRGLPGVKRAVVALA--TSLGEVEYDPTVISKD----DIANAIEDAG--FEASFV-------QSSGQDKILLQ 207 (998)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~~--~~~~~v~~d~~~~~~~----~i~~~i~~~G--~~~~~~-------~~~~~~~~~~~ 207 (998)
...+|+.+++++|+++++-... ...++++|+.+. +++ ++.+++.+.. .+.... ..++.--..+.
T Consensus 63 t~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~-d~d~A~~~V~~kv~~~~~~LP~~~~~p~v~~~~~~~~~i~~~a 141 (1009)
T COG0841 63 TQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGT-DPDTAAVQVQNKIQQAESRLPSGVQQPGVTVEKSSSNPLLILA 141 (1009)
T ss_pred hHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCC-ChHHHHHHHHHHHHHHHhcCCCccCCCceEeccCCCceEEEEE
Confidence 4778999999999987765444 446677787653 444 6666666543 111111 11111222344
Q ss_pred ecC--ccc----hhhhhHHHhhhhcCCCceeEEeecC-CCeEEEEecCCC-----CCcccccccccc
Q 001896 208 VTG--VLC----ELDAHFLEGILSNFKGVRQFRFDKI-SGELEVLFDPEA-----LSSRSLVDGIAG 262 (998)
Q Consensus 208 v~g--m~c----~~ca~~ie~~l~~~~GV~~~~vn~~-~~~~~V~y~~~~-----~~~~~i~~~i~~ 262 (998)
+.+ +.. ..-+..++..|++.+||.++++... ...+.|..||++ +++.++...|+.
T Consensus 142 l~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~~ 208 (1009)
T COG0841 142 LTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRA 208 (1009)
T ss_pred EEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 443 321 1235568999999999999999877 788889999875 566777776653
No 254
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=52.22 E-value=6.1e+02 Score=33.46 Aligned_cols=126 Identities=21% Similarity=0.273 Sum_probs=70.6
Q ss_pred HHHHHHhhcCCCCeeEEEEeecccE--EEEEECCCCCCh----HHHHHHHHhcC--ccchhccccCCCCCCCCc-ceeee
Q 001896 61 SNSVEGALMGLKGVAKASVALLQNK--ADVVFDPDLVKD----EDIKNAIEDAG--FEAEILAESSTSGPKPQG-TIVGQ 131 (998)
Q Consensus 61 ~~~ie~~l~~~~gv~~~~v~l~~~~--~~v~~~~~~~~~----~~i~~~i~~~G--y~~~~~~~~~~~~~~~~~-~~~~~ 131 (998)
...+|++++.++|++++...-..+. ..+.++.+ .+. +++.+.+.+.. +.... .+ ...+.... .....
T Consensus 66 t~piE~~l~~v~gv~~v~S~s~~g~s~i~v~f~~~-~d~~~a~~~v~~~v~~~~~~LP~~~-~~--~~~~~~~~~~~v~~ 141 (1051)
T TIGR00914 66 TYPIETAMAGLPGLETTRSLSRYGLSQVTVIFKDG-TDLYFARQLVNERLQQARDNLPEGV-SP--EMGPISTGLGEIFL 141 (1051)
T ss_pred CHHHHHHhcCCCCeeEEEEEccCceEEEEEEEeCC-CCHHHHHHHHHHHHHHHHhhCCCCC-CC--CcCCCCCCcceeEE
Confidence 3689999999999998865444443 44556544 333 35555565431 11110 00 00000000 01122
Q ss_pred eeecc-----------ccC-h--hhh-hhHHhhhcCCCCceeeeeecC-CCeEEEEeCCCC-----CCHHHHHHHHHhcC
Q 001896 132 YTIGG-----------MTC-A--ACV-NSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKDDIANAIEDAG 190 (998)
Q Consensus 132 l~i~g-----------m~C-~--~C~-~~ie~~l~~~~GV~~~~v~~~-~~~~~v~~d~~~-----~~~~~i~~~i~~~G 190 (998)
+.+.+ .+- . .=+ ..++..|++++||.++.+.-. ...+.|..|+.+ ++..++.++|+...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~L~~i~GV~~V~~~G~~~~ei~V~iD~~kl~~~glt~~dV~~~l~~~~ 221 (1051)
T TIGR00914 142 YTVEAEEGARKKDGGAYTLTDLRTIQDWIIRPQLRTVPGVAEVNSIGGYVKQFLVAPDPEKLAAYGLSLADVVNALERNN 221 (1051)
T ss_pred EEecccccccccccCCCCHHHHHHHHHHHHHHHHhcCCCceEeeecCCceEEEEEEECHHHHHHcCCCHHHHHHHHHHhC
Confidence 33321 111 0 112 247788999999999998643 357789998864 67889999998764
No 255
>PLN02645 phosphoglycolate phosphatase
Probab=51.98 E-value=25 Score=38.95 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=37.1
Q ss_pred HHhhcCCEEEEEcCCC-CCHHHHhcCC---eEEEecCchH-HHH-----HhcCEEEecCChhHHHHHH
Q 001896 861 SFQKDGSIVAMVGDGI-NDSPALAAAD---VGMAIGAGTD-IAI-----EAADYVLMRNSLEDVIIAI 918 (998)
Q Consensus 861 ~l~~~g~~v~~vGDg~-nD~~al~~A~---vgia~~~~~~-~~~-----~~ad~vl~~~~~~~l~~~i 918 (998)
.+.-..+.++||||.. +|+.+-++|+ +++..|..+. ... ...|+++ +++..+.+++
T Consensus 242 ~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~--~~~~~l~~~~ 307 (311)
T PLN02645 242 KFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYT--SKISDFLTLK 307 (311)
T ss_pred HcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEE--CCHHHHHHHh
Confidence 3333467899999997 9999999999 4454553332 221 2367777 6677776644
No 256
>PRK09579 multidrug efflux protein; Reviewed
Probab=51.73 E-value=6.9e+02 Score=32.82 Aligned_cols=140 Identities=12% Similarity=0.143 Sum_probs=77.6
Q ss_pred EEEEeCCCCCh----hHHHHHHHhhcCCCCeeEEEEeecccEEEE--EECCCCCChH----HHHHHHHhcC--ccchhcc
Q 001896 48 IQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALLQNKADV--VFDPDLVKDE----DIKNAIEDAG--FEAEILA 115 (998)
Q Consensus 48 ~~~~v~gm~C~----~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v--~~~~~~~~~~----~i~~~i~~~G--y~~~~~~ 115 (998)
+...-+|.+-. .-...+|++|+.++|+++++..-..+...+ .++.+ .+.+ ++.+++.+.- ... ..+
T Consensus 47 V~t~~pGaspe~vE~~Vt~plE~~L~~v~gi~~i~S~S~~G~s~I~v~f~~g-~d~~~a~~~v~~~v~~v~~~LP~-~~~ 124 (1017)
T PRK09579 47 VTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIG-ADSDRLFTELLAKANEVKNQLPQ-DAE 124 (1017)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CCHHHHHHHHHHHHHHHHHhCCC-CCC
Confidence 33444555432 345678899999999999887666665554 55544 3443 4555555431 111 100
Q ss_pred ccCCCCCCCCcceeeeeeecc--ccCh---h-hhhhHHhhhcCCCCceeeeeecC-CCeEEEEeCCCC-----CCHHHHH
Q 001896 116 ESSTSGPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKDDIA 183 (998)
Q Consensus 116 ~~~~~~~~~~~~~~~~l~i~g--m~C~---~-C~~~ie~~l~~~~GV~~~~v~~~-~~~~~v~~d~~~-----~~~~~i~ 183 (998)
................+.+.+ .+-. . -...++..|++++||.++++.=. ...++|..||.+ ++..++.
T Consensus 125 ~P~i~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~i~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~dV~ 204 (1017)
T PRK09579 125 DPVLSKEAADASALMYISFYSEEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVT 204 (1017)
T ss_pred CCeEEeCCCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHhhcCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHHHH
Confidence 000000000000112233322 1111 1 23568899999999999986533 336788888753 6889999
Q ss_pred HHHHhc
Q 001896 184 NAIEDA 189 (998)
Q Consensus 184 ~~i~~~ 189 (998)
++|++.
T Consensus 205 ~al~~~ 210 (1017)
T PRK09579 205 QAVRRY 210 (1017)
T ss_pred HHHHHh
Confidence 999865
No 257
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=50.72 E-value=35 Score=34.44 Aligned_cols=59 Identities=22% Similarity=0.385 Sum_probs=46.6
Q ss_pred CCCceEEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeeccc-------------------EEEEEECCCCCChHHHHH
Q 001896 42 GDGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKN 102 (998)
Q Consensus 42 ~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~-------------------~~~v~~~~~~~~~~~i~~ 102 (998)
..+|.++.|. ++|=|.+|....+++||.++.+-...+ .+.|.||+..++.+++.+
T Consensus 5 ~~~~~~a~~a------gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~ 78 (186)
T PRK13014 5 ADGMETATFA------GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQ 78 (186)
T ss_pred CCCccEEEEe------cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHH
Confidence 4456666664 789999999999999999999865544 377889999999988888
Q ss_pred HHHh
Q 001896 103 AIED 106 (998)
Q Consensus 103 ~i~~ 106 (998)
..=+
T Consensus 79 ~Ff~ 82 (186)
T PRK13014 79 IFFS 82 (186)
T ss_pred HHHH
Confidence 6654
No 258
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=50.51 E-value=20 Score=37.13 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=58.3
Q ss_pred CCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec-------------cCCccceeeeecCccchhhhhHH
Q 001896 154 PGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ-------------SSGQDKILLQVTGVLCELDAHFL 220 (998)
Q Consensus 154 ~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~~-------------~~~~~~~~~~v~gm~c~~ca~~i 220 (998)
.||..-+....++...+.-++. +...-++.|+..||+-+... ++.+.+.++- -.-++++
T Consensus 43 ~gI~A~K~~~~~g~~~l~Ve~~--~fa~Av~iL~~~GlPr~~f~~l~d~Fp~dgLVsSP~eEkaR~~------~~~eQ~l 114 (246)
T COG4669 43 HGINAEKKADKDGGTSLLVEES--DFAEAVEILNQNGLPRKKFTTLGDIFPKDGLVSSPTEEKARLN------YAKEQQL 114 (246)
T ss_pred cCCcceeeccCCCceEEEEcHH--HHHHHHHHHHhcCCCCCCCCcHHHhCCcccccCCcHHHHHHHH------HHHHHHH
Confidence 6776666666677776664332 23333445567898754321 1112222221 1246789
Q ss_pred HhhhhcCCCceeEEeecC--------------CCeEEEEecCCC---CCccccccccccc
Q 001896 221 EGILSNFKGVRQFRFDKI--------------SGELEVLFDPEA---LSSRSLVDGIAGR 263 (998)
Q Consensus 221 e~~l~~~~GV~~~~vn~~--------------~~~~~V~y~~~~---~~~~~i~~~i~~~ 263 (998)
|+.|++++||.+++|.-. +..+.|+|.|+. .-..+|+..++..
T Consensus 115 e~tLs~mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky~~~~nl~~~v~~IK~LV~nS 174 (246)
T COG4669 115 EQTLSKMDGVISARVHISLPEDDDEGKNALPSSASVFIKYSPDVNLSIYVSQIKRLVANS 174 (246)
T ss_pred HHHHHhcCceEEEEEEEEcCCCCccCCCCCCceeEEEEEecCCCChhHhHHHHHHHHHhc
Confidence 999999999988776322 356678888763 2224455555443
No 259
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=50.36 E-value=5.8e+02 Score=31.59 Aligned_cols=68 Identities=26% Similarity=0.227 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHcCCeEEEEEECC--------eEEEEEEecCCCcHhH-HHHHHHHHhCCCEEEEEcCCCHHHHHHHH
Q 001896 770 DHVESFVVELEESARTGILVAYDD--------NLIGVMGIADPVKREA-AVVVEGLLKMGVRPVMVTGDNWRTAHAVA 838 (998)
Q Consensus 770 ~~~~~~~~~~~~~g~~~i~va~~~--------~~lG~i~l~d~~r~~~-~~~i~~l~~~gi~~~i~tgd~~~~a~~ia 838 (998)
++..+..+++.+.|-+++.+.-|. +-+|+-.+.-...|+- .+.+++||+.|. ++..|||----|-+++
T Consensus 444 ~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~G~-~VaMtGDGvNDAPALa 520 (673)
T PRK14010 444 DGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAKGH-IVAMTGDGTNDAPALA 520 (673)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhCCC-EEEEECCChhhHHHHH
Confidence 344444555555555555444332 1233322222223222 344555555553 2334455444444433
No 260
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=50.00 E-value=94 Score=30.63 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecC--cccH---HHHHHHHhhcCCEEEEE-cCCCCCHHH
Q 001896 808 EAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM--PAGK---ADAVRSFQKDGSIVAMV-GDGINDSPA 881 (998)
Q Consensus 808 ~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~--p~~K---~~~v~~l~~~g~~v~~v-GDg~nD~~a 881 (998)
...+.=+.|++.|+.+.++.|+.......+++++|+..++..-. |.++ .++.+.+.+.|-.+-.+ ++..-+...
T Consensus 54 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~L~~~~~ 133 (165)
T PF00875_consen 54 SLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDHTLVPPDD 133 (165)
T ss_dssp HHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--SSSS-HHH
T ss_pred HHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCcEEEeccc
Confidence 34455567788899999999999999999999999999888653 3333 23556666666655433 333444443
No 261
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=49.48 E-value=46 Score=27.41 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=41.5
Q ss_pred EEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchhc
Q 001896 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (998)
Q Consensus 49 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (998)
++.+.|+.|+...-.+.+++++++.-+ .+.+..+.. ....++....+..||+....
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G~---------~l~v~~d~~-~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPGE---------VLEVLVDDP-AAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESST-THHHHHHHHHHHHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCCC---------EEEEEECCc-cHHHHHHHHHHHCCCEEEEE
Confidence 578899999999999999999974332 334444443 56789999999999986443
No 262
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.99 E-value=96 Score=26.93 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=49.2
Q ss_pred ceEEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEE-----eecccEEEEEECCCCCChHHHHHHHHhcCccchhc
Q 001896 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASV-----ALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (998)
Q Consensus 45 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v-----~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (998)
.+++.+.+---+-..-.--+-+.|++++||+.+.+ +..+....+....+.++-+++.+.+++.|-.++.+
T Consensus 5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSi 79 (97)
T COG1888 5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSI 79 (97)
T ss_pred ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence 45555555554444444556678899999887765 44566666766677789999999999999877543
No 263
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=48.47 E-value=1.6e+02 Score=31.27 Aligned_cols=95 Identities=20% Similarity=0.283 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEE-EcCC-CHHHHHHHHH-HhCcceEEEe
Q 001896 773 ESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVM-VTGD-NWRTAHAVAR-EIGIQDVMAD 849 (998)
Q Consensus 773 ~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i-~tgd-~~~~a~~ia~-~~gi~~~~~~ 849 (998)
+++.+.+.+.|...+. +-|-+-++..+.++.+++.|++.++ ++-. +....+.+++ ..|+.-+.+.
T Consensus 94 ~~fi~~~~~aG~~gii------------ipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~ 161 (242)
T cd04724 94 ERFLRDAKEAGVDGLI------------IPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSR 161 (242)
T ss_pred HHHHHHHHHCCCcEEE------------ECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeC
Confidence 4566667776655333 2354557889999999999998765 5544 3455677777 6666433331
Q ss_pred ------cC--cccHHHHHHHHhhcCCEEEEEcCCCCCH
Q 001896 850 ------VM--PAGKADAVRSFQKDGSIVAMVGDGINDS 879 (998)
Q Consensus 850 ------~~--p~~K~~~v~~l~~~g~~v~~vGDg~nD~ 879 (998)
-+ +.+-.+.++.+++....-.++|-|+|+.
T Consensus 162 ~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~ 199 (242)
T cd04724 162 TGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTP 199 (242)
T ss_pred CCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCH
Confidence 11 2233466777776656667889999954
No 264
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=47.70 E-value=3.6e+02 Score=35.35 Aligned_cols=198 Identities=14% Similarity=0.072 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhcCCCe----EEEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcccccEEEEec
Q 001896 407 FVLFGKYLEILAKGKTSDAIKKLVELAPAT----ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482 (998)
Q Consensus 407 ~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~----~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G 482 (998)
...++.+.+.++ +++.+.++++....... .+..+...+=.+.....+..-+.+|.|.++++.. .+-+|=-.+.|
T Consensus 117 ~~~i~~~qe~ka-~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~il~~~-~l~VdeS~LTG 194 (997)
T TIGR01106 117 TGCFSYYQEAKS-SKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISAQ-GCKVDNSSLTG 194 (997)
T ss_pred HHHHHHHHHHHH-HHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCCCEEEECCCCEEeeeEEEEEcc-CcEEEccccCC
Confidence 334455555554 45666677653322111 1121111111111357778888999999998864 24455555556
Q ss_pred cee-eecccccCcCcccc----cCCCCceecceeeeeceEEEEEEEecChhHHHHHHHHHHHh-hccCChHHHHHHHHHH
Q 001896 483 TSY-VNESMVTGEAVPVL----KEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETA-QMSKAPIQKFADFVAS 556 (998)
Q Consensus 483 ~~~-Vdes~LTGEs~pv~----k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~ 556 (998)
++. |.-..-.-+..|.. -..|..+..|+...-=..++.-+..|.-. +..+..... ..-...+++..+.+..
T Consensus 195 ES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~---~~~~~~~~~~~pl~~~~~~~~~~~~~ 271 (997)
T TIGR01106 195 ESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIA---SLASGLENGKTPIAIEIEHFIHIITG 271 (997)
T ss_pred CCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHH---hhhhhcccCCCcHHHHHHHHHHHHHH
Confidence 654 32221110111221 23577777776432211122222223222 211111111 1112345666777777
Q ss_pred hHHHHHHHHHHHHHHH-HHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHH
Q 001896 557 IFVPIVVTLALFTWLC-WYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVA 624 (998)
Q Consensus 557 ~~~~~~l~~a~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~~~~~ 624 (998)
+.+.+.+++.++.++. +.+.. .+..++...++.+..+.|..+.++...+....
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~m 325 (997)
T TIGR01106 272 VAVFLGVSFFILSLILGYTWLE---------------AVIFLIGIIVANVPEGLLATVTVCLTLTAKRM 325 (997)
T ss_pred HHHHHHHHHHHHHHHhcCCHHH---------------HHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 6655555544443332 11111 13445556666688888888888888776543
No 265
>PRK11018 hypothetical protein; Provisional
Probab=47.28 E-value=90 Score=26.54 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=43.2
Q ss_pred eeeeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001896 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (998)
Q Consensus 130 ~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~ 196 (998)
..+...|..|+.-.-+..++|++++. .+.+.|..|.. ...++|-..+++.||.+...
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~-~a~~di~~~~~~~G~~v~~~ 65 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCP-QSINNIPLDARNHGYTVLDI 65 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCCEEEEE
Confidence 46889999999999999999988753 23344554443 46788999999999998543
No 266
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=45.86 E-value=58 Score=33.57 Aligned_cols=58 Identities=24% Similarity=0.409 Sum_probs=46.5
Q ss_pred CCceEEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeeccc-------------------EEEEEECCCCCChHHHHHH
Q 001896 43 DGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNA 103 (998)
Q Consensus 43 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~-------------------~~~v~~~~~~~~~~~i~~~ 103 (998)
.+|.++.|. ++|=|.+|....+++||.++.+-+..+ .+.|.||+..++.+++.+.
T Consensus 43 ~~~~~a~fa------gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~ 116 (213)
T PRK00058 43 EGMEQAIFG------MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQV 116 (213)
T ss_pred CCccEEEEE------ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHH
Confidence 346666664 789999999999999999999876533 4778899999999988887
Q ss_pred HHh
Q 001896 104 IED 106 (998)
Q Consensus 104 i~~ 106 (998)
.=.
T Consensus 117 Ff~ 119 (213)
T PRK00058 117 FWE 119 (213)
T ss_pred HHH
Confidence 643
No 267
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=45.41 E-value=34 Score=28.99 Aligned_cols=53 Identities=19% Similarity=0.118 Sum_probs=31.5
Q ss_pred hhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCcee
Q 001896 142 CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEAS 194 (998)
Q Consensus 142 C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~ 194 (998)
-+..++=.|.+.++|-.+-+|.-.+...|-||+...+.+++.+.+++.++.+.
T Consensus 12 eA~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi 64 (88)
T PF11491_consen 12 EAMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVI 64 (88)
T ss_dssp TTHHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS
T ss_pred HHHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhhe
Confidence 35566777889999999999999999999999999999999999999887763
No 268
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.55 E-value=1.7e+02 Score=31.31 Aligned_cols=109 Identities=24% Similarity=0.351 Sum_probs=66.6
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEE-EEcCCC-HHHHHHHHHHhC-cceEEE
Q 001896 772 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPV-MVTGDN-WRTAHAVAREIG-IQDVMA 848 (998)
Q Consensus 772 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~-i~tgd~-~~~a~~ia~~~g-i~~~~~ 848 (998)
.+++.+.+.+.|-..+ .+-|.+-++..+.++.+++.|++.+ +++-.. ......+++... +.-+.+
T Consensus 104 ~e~f~~~~~~aGvdgv------------iipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs 171 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGV------------LVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS 171 (256)
T ss_pred HHHHHHHHHHcCCCEE------------EECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE
Confidence 3456666777665433 3346677899999999999999965 666555 445667777654 543322
Q ss_pred e--cC------cccHHHHHHHHhhcCCEEEEEcCCCCC---HHHHhc--CCeEEEecC
Q 001896 849 D--VM------PAGKADAVRSFQKDGSIVAMVGDGIND---SPALAA--ADVGMAIGA 893 (998)
Q Consensus 849 ~--~~------p~~K~~~v~~l~~~g~~v~~vGDg~nD---~~al~~--A~vgia~~~ 893 (998)
. .+ +.+-.+.++.+++....-.++|-|++. +..+.. || |+-+|+
T Consensus 172 ~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GAD-gvVvGS 228 (256)
T TIGR00262 172 RAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGAD-GVIVGS 228 (256)
T ss_pred CCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCC-EEEECH
Confidence 1 11 223456677777654445778999984 443333 34 455554
No 269
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=44.08 E-value=75 Score=31.46 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=46.0
Q ss_pred CCceEEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeeccc-------------------EEEEEECCCCCChHHHHHH
Q 001896 43 DGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNA 103 (998)
Q Consensus 43 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~-------------------~~~v~~~~~~~~~~~i~~~ 103 (998)
.+|.++.|. ++|=|-+|+...++|||.++.+-...+ .+.|.||+..++.+++.+.
T Consensus 4 ~~~~~a~fa------gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ 77 (174)
T COG0225 4 AGMEKAYFA------GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEV 77 (174)
T ss_pred CCcEEEEEe------ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHH
Confidence 345666664 789999999999999999998854433 4668899999999888887
Q ss_pred HHhc
Q 001896 104 IEDA 107 (998)
Q Consensus 104 i~~~ 107 (998)
.=+.
T Consensus 78 ff~i 81 (174)
T COG0225 78 FFEI 81 (174)
T ss_pred Hhee
Confidence 6544
No 270
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=42.93 E-value=1.1e+02 Score=39.35 Aligned_cols=194 Identities=14% Similarity=0.123 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEE----------EEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCcc
Q 001896 404 LITFVLFGKYLEILAKGKTSDAIKKLVELAPATAL----------LVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKL 473 (998)
Q Consensus 404 l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~----------v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~i 473 (998)
+++..+++.+.|.+++ ++.+.++++........+ ..+..++=.+.....+..-|.+|-|.++++. +-+
T Consensus 121 v~l~~~i~~~qe~~a~-~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g-~~l 198 (903)
T PRK15122 121 VLLSGLLRFWQEFRSN-KAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIES-RDL 198 (903)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEc-Cce
Confidence 3334445556665554 677778777654432221 1111122111135677888888889888863 334
Q ss_pred cccEEEEeccee-eecccc------------cCcCcc-----cccCCCCceecceeeeeceEEEEEEEec----------
Q 001896 474 PADGIVVWGTSY-VNESMV------------TGEAVP-----VLKEINSPVIGGTINLHGVLHIQATKVG---------- 525 (998)
Q Consensus 474 PaDg~vl~G~~~-Vdes~L------------TGEs~p-----v~k~~g~~v~aGt~~~~g~~~~~v~~~g---------- 525 (998)
-+|=-.+.|++. |+-... .++..+ -....|..+..|+...-=..++.-+..|
T Consensus 199 ~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~~v~~~~ 278 (903)
T PRK15122 199 FISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAKSIVGTR 278 (903)
T ss_pred EEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHHHhcCCC
Confidence 556555556654 433321 122211 1246688888887533211111111111
Q ss_pred ChhHHHHHHHHHHHhhccCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhh
Q 001896 526 SDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVV 605 (998)
Q Consensus 526 ~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvl 605 (998)
..|.+.+- -.++.+.+..++.++++++++++.+...-|.- .+..++..+++..
T Consensus 279 ~~t~l~~~----------l~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~-----------------~l~~aisl~V~~~ 331 (903)
T PRK15122 279 AQTAFDRG----------VNSVSWLLIRFMLVMVPVVLLINGFTKGDWLE-----------------ALLFALAVAVGLT 331 (903)
T ss_pred CCCcHHHH----------HHHHHHHHHHHHHHHHHHhhhhhhhccCCHHH-----------------HHHHHHHHHHHHc
Confidence 12222111 12355667778888888777766543221211 2344566677777
Q ss_pred hhhccccchhhHHHHHHHHHH
Q 001896 606 VIACPCALGLATPTAVMVATG 626 (998)
Q Consensus 606 v~~~P~aL~la~p~~~~~~~~ 626 (998)
.-+.|.++++++..+.....+
T Consensus 332 Pe~Lp~~vt~~La~g~~~mak 352 (903)
T PRK15122 332 PEMLPMIVSSNLAKGAIAMAR 352 (903)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 777777777777776654443
No 271
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=42.73 E-value=78 Score=30.08 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=46.3
Q ss_pred CCeEEEEEEecCCCcHhHHHHHHHHHhCCC-EE-EEEcCCCHHHHHHHHHHhCcceEEEe-cCcccHHH
Q 001896 792 DDNLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNWRTAHAVAREIGIQDVMAD-VMPAGKAD 857 (998)
Q Consensus 792 ~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi-~~-~i~tgd~~~~a~~ia~~~gi~~~~~~-~~p~~K~~ 857 (998)
+-.++|+-++...-.+.+++.++.|+++|. ++ +++=|-.+..-..-.+++|++.+|.. .++.+...
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~ 121 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAI 121 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHH
Confidence 446788888888889999999999999987 44 44444444444566888999987764 33334333
No 272
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=42.50 E-value=2.4e+02 Score=36.25 Aligned_cols=109 Identities=18% Similarity=0.103 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeEE----------EEEecCCCcceeEEEEeCCCCCCCCEEEEcCCC
Q 001896 402 AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATAL----------LVVKDKVGKCIEEREIDALLIQSGDTLKVLPGT 471 (998)
Q Consensus 402 ~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~~----------v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~ 471 (998)
.++++..+++.+.|.+++ |+.+.++++....+...+ ..+..++=.+.....+..-|.+|-|.++++ |+
T Consensus 96 ~iv~~~~~i~~~~e~~a~-ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~-g~ 173 (867)
T TIGR01524 96 LMVLASGLLGFIQESRAE-RAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVIS-AR 173 (867)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEe-cC
Confidence 345555668889998886 788888888766655444 222222211123567788888899988886 44
Q ss_pred cccccEEEEeccee-eeccccc--CcCccc-----ccCCCCceecceee
Q 001896 472 KLPADGIVVWGTSY-VNESMVT--GEAVPV-----LKEINSPVIGGTIN 512 (998)
Q Consensus 472 ~iPaDg~vl~G~~~-Vdes~LT--GEs~pv-----~k~~g~~v~aGt~~ 512 (998)
-+-+|=-.+.|++. |+-..-+ .+..|. .-..|..+..|...
T Consensus 174 ~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~ 222 (867)
T TIGR01524 174 DLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQ 222 (867)
T ss_pred ceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEE
Confidence 45567666667764 3322111 011111 13578888888744
No 273
>PF15584 Imm44: Immunity protein 44
Probab=42.26 E-value=12 Score=32.33 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCcccccEEE
Q 001896 461 SGDTLKVLPGTKLPADGIV 479 (998)
Q Consensus 461 ~GDii~v~~G~~iPaDg~v 479 (998)
+.+..+|+.|++|||||+=
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 4566789999999999985
No 274
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=42.19 E-value=1.4e+02 Score=31.63 Aligned_cols=118 Identities=13% Similarity=0.143 Sum_probs=69.5
Q ss_pred HHHHHHHHhCCCEEEEEcCCCHHHHHHHHH----HhCcceEEE---ecCcccHHHHHHHHhhcCCEEEEEcCCCCCHH--
Q 001896 810 AVVVEGLLKMGVRPVMVTGDNWRTAHAVAR----EIGIQDVMA---DVMPAGKADAVRSFQKDGSIVAMVGDGINDSP-- 880 (998)
Q Consensus 810 ~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~----~~gi~~~~~---~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~-- 880 (998)
.+.++...+.|.++.++ |..+.++...++ +.|+.-+.. -..|++..++++.+.+.+..+++||=|.-==+
T Consensus 95 ~~ll~~~~~~~~~v~ll-G~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~PkQE~~ 173 (243)
T PRK03692 95 EALMARAGKEGTPVFLV-GGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGSPKQEIF 173 (243)
T ss_pred HHHHHHHHhcCCeEEEE-CCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCcHHHHH
Confidence 45566666778888888 555554444443 335532111 12466777899999999999999999954211
Q ss_pred -----HHhcCCeEEEecCchHHH---HHhcCEEEecCChhHHHHHHHHHHHHHHHH
Q 001896 881 -----ALAAADVGMAIGAGTDIA---IEAADYVLMRNSLEDVIIAIDLSRKTFARI 928 (998)
Q Consensus 881 -----al~~A~vgia~~~~~~~~---~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i 928 (998)
..-.+.+.+++|.+-|.. ...|--.+..-++..+..++.+=|+..+.+
T Consensus 174 ~~~~~~~~~~~v~~gvGg~fD~~aG~~~RAP~w~~~~gLEWlyRl~~EP~R~~R~~ 229 (243)
T PRK03692 174 MRDCRLVYPDALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWLYRLLSQPSRIRRQL 229 (243)
T ss_pred HHHHHHhCCCCEEEEeCeEEEEecCCcCcCcHHHHHhChHHHHHhHhCcHHHHHHH
Confidence 111345666666421110 112222333457888899998888754433
No 275
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=41.58 E-value=3.4e+02 Score=29.47 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=69.4
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHhCCCEEE--------EEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhc
Q 001896 794 NLIGVMGIADPVKREAAVVVEGLLKMGVRPV--------MVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKD 865 (998)
Q Consensus 794 ~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~--------i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~ 865 (998)
.-++++.-.--..++..+.++.|++..-... -.|-+....+..+|+++.+--+.+.-....-.++.+..++.
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~ 234 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEH 234 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHC
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHh
Confidence 3477777788888899999999998866554 23667788888888887765566655555566778888888
Q ss_pred CCEEEEEcCCC-CCHHHHhcC-CeEEEecCch
Q 001896 866 GSIVAMVGDGI-NDSPALAAA-DVGMAIGAGT 895 (998)
Q Consensus 866 g~~v~~vGDg~-nD~~al~~A-~vgia~~~~~ 895 (998)
|..+.+|.+-. =|...|+.+ .|||.-|.++
T Consensus 235 ~~~t~~Ie~~~el~~~~l~~~~~VGItaGAST 266 (281)
T PF02401_consen 235 GKPTYHIETADELDPEWLKGVKKVGITAGAST 266 (281)
T ss_dssp TTCEEEESSGGG--HHHHTT-SEEEEEE-TTS
T ss_pred CCCEEEeCCccccCHhHhCCCCEEEEEccCCC
Confidence 88888887752 134567777 5999998554
No 276
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=41.57 E-value=1.7e+02 Score=30.20 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=62.2
Q ss_pred EEEEEecCCCcHh--HHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec------Cc---------ccHH--
Q 001896 796 IGVMGIADPVKRE--AAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV------MP---------AGKA-- 856 (998)
Q Consensus 796 lG~i~l~d~~r~~--~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~------~p---------~~K~-- 856 (998)
-|.+-+++ ++|+ .++.+-.|++.+ .|+.|.-...-|.++.+.+||.+.|.++ .| ..+.
T Consensus 91 ~~~LPlq~-LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE 167 (244)
T KOG3109|consen 91 HGRLPLQD-LKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFE 167 (244)
T ss_pred hccCcHhh-cCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHH
Confidence 45555666 6665 478888888765 8899999999999999999998644433 23 2221
Q ss_pred HHHHHHhhc-CCEEEEEcCCCCCHHHHhcCCe
Q 001896 857 DAVRSFQKD-GSIVAMVGDGINDSPALAAADV 887 (998)
Q Consensus 857 ~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~v 887 (998)
.+.+...-. .+++.|+-|+.+.+.+-+.-+.
T Consensus 168 ~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl 199 (244)
T KOG3109|consen 168 KAMKVAGIDSPRNTYFFDDSERNIQTAKEVGL 199 (244)
T ss_pred HHHHHhCCCCcCceEEEcCchhhHHHHHhccc
Confidence 222322222 5679999999999998888773
No 277
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=41.25 E-value=9.7e+02 Score=31.52 Aligned_cols=130 Identities=12% Similarity=0.037 Sum_probs=72.9
Q ss_pred HHHHHHHhhcCCCCeeEEEEeec-----ccEEEEEECCCC---CChHHHHHHHHhc-C-c-cchhcc-ccCCCC-CCCCc
Q 001896 60 CSNSVEGALMGLKGVAKASVALL-----QNKADVVFDPDL---VKDEDIKNAIEDA-G-F-EAEILA-ESSTSG-PKPQG 126 (998)
Q Consensus 60 C~~~ie~~l~~~~gv~~~~v~l~-----~~~~~v~~~~~~---~~~~~i~~~i~~~-G-y-~~~~~~-~~~~~~-~~~~~ 126 (998)
-.+.+++.+++.++|+++..... .+...+...+.. .+.+++.+.+.+. . + .+.... ...... .....
T Consensus 578 ~~~~~~~~l~~~~~V~~v~~~~g~~~~~~~~~~v~l~~~~~r~~~~~~i~~~lr~~l~~~pg~~~~~~~~~~~~~~g~~~ 657 (1025)
T PRK10614 578 KLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPLSERSETAQQVIDRLRVKLAKEPGANLFLMAVQDIRVGGRQS 657 (1025)
T ss_pred HHHHHHHHHhcCCCeEEEEEEecCCCCceeEEEEEecchhhccCcHHHHHHHHHHHHhcCCCcEEEecCCcccCcCCCCC
Confidence 44556677777888887665422 234445543321 1344555544432 1 1 111110 000000 00011
Q ss_pred ceeeeeeeccccCh---hhhhhHHhhhcCCCCceeeeeecCCC--eEEEEeCCC-----CCCHHHHHHHHHhc
Q 001896 127 TIVGQYTIGGMTCA---ACVNSVEGILRGLPGVKRAVVALATS--LGEVEYDPT-----VISKDDIANAIEDA 189 (998)
Q Consensus 127 ~~~~~l~i~gm~C~---~C~~~ie~~l~~~~GV~~~~v~~~~~--~~~v~~d~~-----~~~~~~i~~~i~~~ 189 (998)
...+.+++.|-+-. .-+.++++.+++.+|+.++..+...+ .+.+..|+. .++..++.+.++..
T Consensus 658 ~~~i~i~l~G~d~~~L~~~a~~i~~~L~~~pgv~~v~~~~~~~~~el~i~id~~ka~~~Gls~~~v~~~l~~~ 730 (1025)
T PRK10614 658 NASYQYTLLSDDLAALREWEPKIRKALAALPELADVNSDQQDKGAEMALTYDRDTMARLGIDVQAANSLLNNA 730 (1025)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 12356677665433 23678999999999999999876554 777777774 36788998888765
No 278
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=41.22 E-value=52 Score=32.19 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=40.5
Q ss_pred hhHHHHHHHhhcCCCCeeEEEEeeccc--------------EEEEEECCCCCChHHHHHHHHh
Q 001896 58 AACSNSVEGALMGLKGVAKASVALLQN--------------KADVVFDPDLVKDEDIKNAIED 106 (998)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~l~~~--------------~~~v~~~~~~~~~~~i~~~i~~ 106 (998)
++|=|.+|....+++||.++.+-...+ .+.|.||+..++.+++.+..=.
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~ 70 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFE 70 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999999855432 3678899999999988886554
No 279
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.20 E-value=97 Score=33.96 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=31.4
Q ss_pred HHHHHHHhh-----cCCEEEEEcCC-CCCHH---HHhcCCeEEEec-C---chHHHHHhcCEEEec
Q 001896 856 ADAVRSFQK-----DGSIVAMVGDG-INDSP---ALAAADVGMAIG-A---GTDIAIEAADYVLMR 908 (998)
Q Consensus 856 ~~~v~~l~~-----~g~~v~~vGDg-~nD~~---al~~A~vgia~~-~---~~~~~~~~ad~vl~~ 908 (998)
..+++.|+. .|+.|+++|-| .==.| .|..++..+.+- + ........||+++.-
T Consensus 144 ~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsa 209 (301)
T PRK14194 144 SGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAA 209 (301)
T ss_pred HHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEe
Confidence 345555554 38899999997 33333 445566555543 1 223445678998864
No 280
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.73 E-value=1.1e+02 Score=24.93 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=38.1
Q ss_pred eeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001896 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (998)
Q Consensus 132 l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~ 196 (998)
+.+.|+.|+.-.-+..+++ ++.. .+.+.|..|.. ...++|...+++.||.....
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~-~s~~~i~~~~~~~G~~~~~~ 55 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNE-VAKENVSRFAESRGYEVSVE 55 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcCh-hHHHHHHHHHHHcCCEEEEE
Confidence 4567999999999998988 5432 22344444432 45688999999999999543
No 281
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=40.50 E-value=1e+03 Score=31.45 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=74.3
Q ss_pred hhHHHHHHHhhcCCCCeeEEEEeec---------ccEEEEEECCC---CCChHHHHHHHHhc-C-c-cchhccccCCC-C
Q 001896 58 AACSNSVEGALMGLKGVAKASVALL---------QNKADVVFDPD---LVKDEDIKNAIEDA-G-F-EAEILAESSTS-G 121 (998)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~l~---------~~~~~v~~~~~---~~~~~~i~~~i~~~-G-y-~~~~~~~~~~~-~ 121 (998)
....+.+|+.+.+.|+|+++..... .+...+...+. ..+.+++.+.+++. . + .+......... .
T Consensus 586 ~~~~~~ve~~l~~~~~v~~~~~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~v~~~lr~~l~~~p~~~~~~~~~~~~~ 665 (1040)
T PRK10503 586 AQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVAKVPGVDLYLQPTQDLT 665 (1040)
T ss_pred HHHHHHHHHHHhhCCCeEEEEEEeccCCCCCCCceEEEEEEecchhhccCCHHHHHHHHHHHHhcCCCcEEeccCCcccc
Confidence 3578889999988899987765432 12344544322 12334554444332 1 1 11111000000 0
Q ss_pred C-CCCcceeeeeeeccccCh---hhhhhHHhhhcCCCCceeeeeecC--CCeEEEEeCCCC-----CCHHHHHHHHHhc
Q 001896 122 P-KPQGTIVGQYTIGGMTCA---ACVNSVEGILRGLPGVKRAVVALA--TSLGEVEYDPTV-----ISKDDIANAIEDA 189 (998)
Q Consensus 122 ~-~~~~~~~~~l~i~gm~C~---~C~~~ie~~l~~~~GV~~~~v~~~--~~~~~v~~d~~~-----~~~~~i~~~i~~~ 189 (998)
. .......+.+++.|-+=. .-+.++++.+++.+|+.++..+.. ...+.+..|+++ ++..++.+.++..
T Consensus 666 ~~~~~~~~~v~i~l~G~d~~~L~~~a~~l~~~l~~~pgv~~v~~~~~~~~~e~~v~id~~k~~~~Gls~~~v~~~l~~~ 744 (1040)
T PRK10503 666 IDTQVSRTQYQFTLQATSLDALSTWVPKLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNALYNA 744 (1040)
T ss_pred ccCCCCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCCeEEEEccccCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 0 001112356677775432 235678899999999999986544 457788887753 6788998888764
No 282
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=40.48 E-value=3.7e+02 Score=29.24 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=72.8
Q ss_pred EEEEEecCCCcHhHHHHHHHHHhCC--CE------EEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhcCC
Q 001896 796 IGVMGIADPVKREAAVVVEGLLKMG--VR------PVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGS 867 (998)
Q Consensus 796 lG~i~l~d~~r~~~~~~i~~l~~~g--i~------~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~ 867 (998)
++++.-.--.+++..+.++.|++.. .. +.-.|-+.+..++.+|+++.+--+.+.-....=.++.+-.++.|.
T Consensus 156 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~ 235 (280)
T TIGR00216 156 LGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGP 235 (280)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCC
Confidence 7777777777788899999998866 22 345688899999999999887666666544445567777777787
Q ss_pred EEEEEcCC-CCCHHHHhcCC-eEEEecCch
Q 001896 868 IVAMVGDG-INDSPALAAAD-VGMAIGAGT 895 (998)
Q Consensus 868 ~v~~vGDg-~nD~~al~~A~-vgia~~~~~ 895 (998)
.+..|.+- --|...|+..+ |||.-|.++
T Consensus 236 ~t~~Ie~~~el~~~~l~~~~~VGiTAGAST 265 (280)
T TIGR00216 236 PSYLIETAEELPEEWLKGVKVVGITAGAST 265 (280)
T ss_pred CEEEECChHHCCHHHhCCCCEEEEEecCCC
Confidence 78888765 23666777665 788888443
No 283
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=39.56 E-value=31 Score=35.71 Aligned_cols=98 Identities=12% Similarity=0.168 Sum_probs=50.6
Q ss_pred CCChhHHHHHHHhhcC-----------CCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchhcc-------c
Q 001896 55 MTCAACSNSVEGALMG-----------LKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILA-------E 116 (998)
Q Consensus 55 m~C~~C~~~ie~~l~~-----------~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~-------~ 116 (998)
+.|.+|..-+-+.|.+ ..||.-.+..-.++...+..+. .+..+-.+.+...||.-+... .
T Consensus 15 l~L~gCk~~Ly~gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~--~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~ 92 (246)
T COG4669 15 LLLTGCKVDLYTGLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEE--SDFAEAVEILNQNGLPRKKFTTLGDIFPK 92 (246)
T ss_pred HHHhcchHHHHcCCCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcH--HHHHHHHHHHHhcCCCCCCCCcHHHhCCc
Confidence 3577787544443332 2345444444445555443322 223344556677888764332 1
Q ss_pred cCCCCCCCCcceeeeeeeccccChhhhhhHHhhhcCCCCceeeeee
Q 001896 117 SSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVA 162 (998)
Q Consensus 117 ~~~~~~~~~~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~ 162 (998)
+.--..+.++..++.+-+ ...+|+.|++++||.+++|.
T Consensus 93 dgLVsSP~eEkaR~~~~~--------eQ~le~tLs~mDGVi~ArV~ 130 (246)
T COG4669 93 DGLVSSPTEEKARLNYAK--------EQQLEQTLSKMDGVISARVH 130 (246)
T ss_pred ccccCCcHHHHHHHHHHH--------HHHHHHHHHhcCceEEEEEE
Confidence 111111112222223322 58899999999999887664
No 284
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.47 E-value=1.8e+02 Score=23.90 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=41.4
Q ss_pred EEEeCCCCCCHHHHHHHHHhcCCceeeeccC----CccceeeeecCccchhhhhHHHhhhhcCCCceeEEe
Q 001896 169 EVEYDPTVISKDDIANAIEDAGFEASFVQSS----GQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRF 235 (998)
Q Consensus 169 ~v~~d~~~~~~~~i~~~i~~~G~~~~~~~~~----~~~~~~~~v~gm~c~~ca~~ie~~l~~~~GV~~~~v 235 (998)
.+......--..+|.+.|.+.|-.+...... ......+.++--.-...-..+-+.|++++||.++.+
T Consensus 4 ~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 4 SLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 3443333335788999999998887654321 122344444432222356788889999999998864
No 285
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=39.43 E-value=69 Score=40.87 Aligned_cols=72 Identities=11% Similarity=0.142 Sum_probs=56.4
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecC-----------CCcHhHHHHHHHHHhC-CCEEEEEcCCCHHHHHHHHH
Q 001896 772 VESFVVELEESARTGILVAYDDNLIGVMGIAD-----------PVKREAAVVVEGLLKM-GVRPVMVTGDNWRTAHAVAR 839 (998)
Q Consensus 772 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d-----------~~r~~~~~~i~~l~~~-gi~~~i~tgd~~~~a~~ia~ 839 (998)
.+.....+.....+.+.+.|||++..+..--+ .+.+++.++++.|.+. +-.|+|+||++.........
T Consensus 579 ~~~~~~~y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg 658 (934)
T PLN03064 579 PEDAIQRYLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFG 658 (934)
T ss_pred HHHHHHHHHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhC
Confidence 45566677777889999999999987643322 2458889999999876 67899999999999888887
Q ss_pred HhCc
Q 001896 840 EIGI 843 (998)
Q Consensus 840 ~~gi 843 (998)
.+++
T Consensus 659 ~~~L 662 (934)
T PLN03064 659 EFDM 662 (934)
T ss_pred CCCc
Confidence 6554
No 286
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=38.33 E-value=1.2e+02 Score=39.97 Aligned_cols=118 Identities=13% Similarity=0.214 Sum_probs=72.9
Q ss_pred hhhHHhhhcCCCCceeeeeec---CCCeEEEEeCCCCCCHH----HHHHHHHhc--CCc--ee---e--eccCCccceee
Q 001896 143 VNSVEGILRGLPGVKRAVVAL---ATSLGEVEYDPTVISKD----DIANAIEDA--GFE--AS---F--VQSSGQDKILL 206 (998)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~---~~~~~~v~~d~~~~~~~----~i~~~i~~~--G~~--~~---~--~~~~~~~~~~~ 206 (998)
...+|++++.++||++++-.. ....+.++|+++. +.+ ++.+.+++. .++ +. + .......-..+
T Consensus 62 t~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~v~~~~~~~~~~~~~~v~~~ 140 (1037)
T PRK10555 62 TQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGT-DPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTI 140 (1037)
T ss_pred hHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECCC-CHHHHHHHHHHHHHHHHHhCCCccccCCceEeCCCCCceEEE
Confidence 367899999999999988743 2345788887764 444 444455432 122 11 1 11111112334
Q ss_pred eecC----ccch---h-hhhHHHhhhhcCCCceeEEeecCCCeEEEEecCCC-----CCccccccccc
Q 001896 207 QVTG----VLCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIA 261 (998)
Q Consensus 207 ~v~g----m~c~---~-ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~y~~~~-----~~~~~i~~~i~ 261 (998)
.+.+ ++-. . -+..++..|.+.+||.++.++.....+.|..||.+ ++..++.+.|.
T Consensus 141 ~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~ 208 (1037)
T PRK10555 141 AFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIE 208 (1037)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHH
Confidence 4422 2211 1 24668899999999999999877677899999864 55566666554
No 287
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=38.08 E-value=3.6e+02 Score=32.41 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=52.3
Q ss_pred HhHHHHHHHHHhCCCEEEEEcCC-CHHHHHHHHHHhCcc-eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCC
Q 001896 807 REAAVVVEGLLKMGVRPVMVTGD-NWRTAHAVAREIGIQ-DVMADVMPAGKADAVRSFQKDGSIVAMVGDGIN 877 (998)
Q Consensus 807 ~~~~~~i~~l~~~gi~~~i~tgd-~~~~a~~ia~~~gi~-~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~n 877 (998)
-|+-.++...++.+-++.+++=. ....+..+++-++++ ..+.-.++++=...++.++++|.. +.|||+.-
T Consensus 94 ~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~G~~-~vvG~~~~ 165 (538)
T PRK15424 94 FDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKANGIE-AVVGAGLI 165 (538)
T ss_pred hHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCC-EEEcCchH
Confidence 45677788888877788888744 456677888888886 345555777778899999999974 56799855
No 288
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=38.03 E-value=1.3e+02 Score=28.72 Aligned_cols=85 Identities=24% Similarity=0.280 Sum_probs=59.7
Q ss_pred EEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCH----------HHHHHHHHHhCcceEEEecCcccHHHHHHHHhh
Q 001896 795 LIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNW----------RTAHAVAREIGIQDVMADVMPAGKADAVRSFQK 864 (998)
Q Consensus 795 ~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~----------~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~ 864 (998)
-++++++.|.+...+....+.|+++|++++-+--... .+...|-+...+.++|-+ |+.-.++++..-+
T Consensus 18 ~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~--~e~~~~i~~eal~ 95 (140)
T COG1832 18 TIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRR--SEAAPEVAREALE 95 (140)
T ss_pred eEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecC--hhhhHHHHHHHHh
Confidence 4788999999999999999999999999988743111 111222233333456654 6677788888877
Q ss_pred cCCEEEEEcCCCCCHHH
Q 001896 865 DGSIVAMVGDGINDSPA 881 (998)
Q Consensus 865 ~g~~v~~vGDg~nD~~a 881 (998)
.+.++.+.=-|+-+-.|
T Consensus 96 ~~~kv~W~QlGi~n~ea 112 (140)
T COG1832 96 KGAKVVWLQLGIRNEEA 112 (140)
T ss_pred hCCCeEEEecCcCCHHH
Confidence 78888887777554444
No 289
>PLN02423 phosphomannomutase
Probab=37.80 E-value=68 Score=34.12 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=37.3
Q ss_pred EEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHH
Q 001896 786 GILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAV 837 (998)
Q Consensus 786 ~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~i 837 (998)
.+++-.||+++- =..++.+...++|++|++. ++++++||+........
T Consensus 9 i~~~D~DGTLl~---~~~~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~ 56 (245)
T PLN02423 9 IALFDVDGTLTA---PRKEATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQ 56 (245)
T ss_pred EEEEeccCCCcC---CCCcCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHH
Confidence 444777888873 2456889999999999986 99999999977765433
No 290
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=36.68 E-value=1.5e+02 Score=24.34 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=40.3
Q ss_pred eeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001896 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (998)
Q Consensus 132 l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~ 196 (998)
+...|..|+.=.-+..+++++++- .+.+.|..|.. ...++|....++.||++...
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~-~s~~di~~~~~~~g~~~~~~ 56 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKP---------GDTLLVLATDP-STTRDIPKFCTFLGHELLAQ 56 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCC-chHHHHHHHHHHcCCEEEEE
Confidence 456689999988888999987742 23445555433 46889999999999998643
No 291
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=36.57 E-value=4.1e+02 Score=34.35 Aligned_cols=210 Identities=15% Similarity=0.097 Sum_probs=117.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCeE----EEEEecCCCcceeEEEEeCCCCCCCCEEEEcCCCc
Q 001896 397 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATA----LLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTK 472 (998)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~e~~~~~k~~~~l~~l~~~~~~~~----~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~ 472 (998)
++...++++...++|.+.|.+ ..++.+.++++.+.....- ++.+..++=.+..-..+...|.+|-|..+++..+
T Consensus 106 ~~~I~~~i~~n~~~g~~qe~~-a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~- 183 (917)
T COG0474 106 AIVILLVVVINALLGFVQEYR-AEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSD- 183 (917)
T ss_pred eeeehHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecC-
Confidence 333455666666777555555 4567777877766554332 2222112211113577889999999999999887
Q ss_pred ccccEEEEeccee-eecc--cccCcCcccc---c---CCCCceecceeeeeceEEEEEEEecChhHHHHHHHHHHHhhcc
Q 001896 473 LPADGIVVWGTSY-VNES--MVTGEAVPVL---K---EINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMS 543 (998)
Q Consensus 473 iPaDg~vl~G~~~-Vdes--~LTGEs~pv~---k---~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~ 543 (998)
.-+|=-.+.|++. |+-. ..+.|..|+. + ..|..|..|+-..-=..++.-+..|+.+..-.-.+ .....-
T Consensus 184 l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~--~~~t~l 261 (917)
T COG0474 184 LEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKK--EVKTPL 261 (917)
T ss_pred ceEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhcccc--ccCCcH
Confidence 5666666667764 2221 1222444443 3 45888888884333233333333343333222211 111111
Q ss_pred CChHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccchhhHHH
Q 001896 544 KAPIQKFADFVASIFVPIVVTLALFTWLC----WYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPT 619 (998)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~l~~a~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~ 619 (998)
...+.+....+..+.+.+.++..+..+.. |.- .+..++..+++++..+.|..+.++..+
T Consensus 262 ~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~l~va~IPegLp~~vti~la~ 324 (917)
T COG0474 262 QRKLNKLGKFLLVLALVLGALVFVVGLFRGGNGLLE-----------------SFLTALALAVAAVPEGLPAVVTIALAL 324 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH-----------------HHHHHHHHHHhccccchHHHHHHHHHH
Confidence 22345555555555555555444444433 221 356778889999999999999998888
Q ss_pred HHHHHHHH
Q 001896 620 AVMVATGV 627 (998)
Q Consensus 620 ~~~~~~~~ 627 (998)
+...-.++
T Consensus 325 g~~~mak~ 332 (917)
T COG0474 325 GAQRMAKD 332 (917)
T ss_pred HHHHHHhc
Confidence 87664444
No 292
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=36.46 E-value=1.4e+02 Score=27.40 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=41.7
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHhCCC-EE-EEEcCCCHHHHHHHHHHhCcceEEE
Q 001896 794 NLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNWRTAHAVAREIGIQDVMA 848 (998)
Q Consensus 794 ~~lG~i~l~d~~r~~~~~~i~~l~~~gi-~~-~i~tgd~~~~a~~ia~~~gi~~~~~ 848 (998)
.++|+-...+.--+.+++.++.+|+.+- ++ +++-|.....-...+++.|.+.++.
T Consensus 52 dvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 52 DAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred CEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEEC
Confidence 5677777767777999999999999976 44 5677766555456889999977664
No 293
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=36.30 E-value=1.4e+02 Score=24.57 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=40.7
Q ss_pred eeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001896 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (998)
Q Consensus 132 l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~ 196 (998)
+...|..|+.=.-+..+++++++. .+.+.|..|.. ...++|....++.||.+...
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~---------G~~l~V~~d~~-~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKP---------GEILEVISDCP-QSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEecCc-hHHHHHHHHHHHcCCEEEEE
Confidence 456799999999999999988753 23344544433 46888999999999998643
No 294
>COG4996 Predicted phosphatase [General function prediction only]
Probab=35.53 E-value=71 Score=29.88 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=53.8
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec--Cccc-HH----HHHHHHhhc------CCEEE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV--MPAG-KA----DAVRSFQKD------GSIVA 870 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~--~p~~-K~----~~v~~l~~~------g~~v~ 870 (998)
.++++++++++.+|+.|.-+..+|=..+..|....+.++++++|.-. .|.. |- ++++.++.+ ...+.
T Consensus 41 ~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Iv 120 (164)
T COG4996 41 HLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIV 120 (164)
T ss_pred EEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEE
Confidence 47899999999999999999999999999999999999999877643 3332 32 234444322 34577
Q ss_pred EEcCC
Q 001896 871 MVGDG 875 (998)
Q Consensus 871 ~vGDg 875 (998)
++-|-
T Consensus 121 y~DDR 125 (164)
T COG4996 121 YLDDR 125 (164)
T ss_pred EEecc
Confidence 77665
No 295
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=34.83 E-value=1.6e+02 Score=23.84 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=40.7
Q ss_pred eeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001896 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (998)
Q Consensus 132 l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~ 196 (998)
+...|+.|+.=.-+..+++++++. .+.+.|..|.. ....+|...+++.||.....
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~---------g~~l~v~~d~~-~~~~~i~~~~~~~g~~~~~~ 56 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKS---------GEVLEVLLDDP-GAVEDIPAWAKETGHEVLEV 56 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCC---------CCEEEEEecCC-cHHHHHHHHHHHcCCEEEEE
Confidence 456799999988888888887542 34455565544 36889999999999997543
No 296
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=34.55 E-value=4.6e+02 Score=25.84 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=57.0
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCH-HHHHHHHHHh--CcceEEE
Q 001896 772 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNW-RTAHAVAREI--GIQDVMA 848 (998)
Q Consensus 772 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~-~~a~~ia~~~--gi~~~~~ 848 (998)
++...+.+...|.-++..+|...+. ....++.|+..|++++...|+.. ..+....+.+ +-.+.+.
T Consensus 43 ~~~i~~~ls~~G~i~~~R~Y~~a~a------------~~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~v 110 (160)
T TIGR00288 43 LDEIREILSEYGDIKIGKVLLNQYA------------SDKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVA 110 (160)
T ss_pred HHHHHHHHHhcCCeEEEEEEechhc------------cHHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEE
Confidence 4555677788887666666632211 12457889999999988888532 2223333322 2223343
Q ss_pred ecC-cccHHHHHHHHhhcCCEEEEEcCC
Q 001896 849 DVM-PAGKADAVRSFQKDGSIVAMVGDG 875 (998)
Q Consensus 849 ~~~-p~~K~~~v~~l~~~g~~v~~vGDg 875 (998)
=++ ..+=..+++.++++|.+|..+|-.
T Consensus 111 LvSgD~DF~~Lv~~lre~G~~V~v~g~~ 138 (160)
T TIGR00288 111 LVTRDADFLPVINKAKENGKETIVIGAE 138 (160)
T ss_pred EEeccHhHHHHHHHHHHCCCEEEEEeCC
Confidence 333 345667899999999999988853
No 297
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=34.11 E-value=20 Score=36.14 Aligned_cols=13 Identities=62% Similarity=0.830 Sum_probs=12.2
Q ss_pred EEecCCCccccCc
Q 001896 650 VIFDKTGTLTQGR 662 (998)
Q Consensus 650 i~fDKTGTLT~~~ 662 (998)
+|||.+||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6999999999998
No 298
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.02 E-value=5.9e+02 Score=26.92 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=60.7
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCC---cHhHHHHHHHHHhCCCEEEEEcC-C-CHHHHHHHHHHhCcceE
Q 001896 772 VESFVVELEESARTGILVAYDDNLIGVMGIADPV---KREAAVVVEGLLKMGVRPVMVTG-D-NWRTAHAVAREIGIQDV 846 (998)
Q Consensus 772 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~---r~~~~~~i~~l~~~gi~~~i~tg-d-~~~~a~~ia~~~gi~~~ 846 (998)
.+++.+.+.+.|-..+. +.|-+ .++..+.++.+++.|+++.++-. . +.+....+++...---+
T Consensus 90 ~~~~i~~~~~~Gadgvi------------i~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~ 157 (244)
T PRK13125 90 LDNFLNMARDVGADGVL------------FPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIY 157 (244)
T ss_pred HHHHHHHHHHcCCCEEE------------ECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 34455666666655333 24432 36788999999999999765533 2 35566777776543222
Q ss_pred EEecCc-------ccHHHHHHHHhhcC-CEEEEEcCCC---CCHHHHhcCCe-EEEecC
Q 001896 847 MADVMP-------AGKADAVRSFQKDG-SIVAMVGDGI---NDSPALAAADV-GMAIGA 893 (998)
Q Consensus 847 ~~~~~p-------~~K~~~v~~l~~~g-~~v~~vGDg~---nD~~al~~A~v-gia~~~ 893 (998)
+ .+.| .+-.+.++.+++.. +....+|-|+ +|+..+..++. |+-+|+
T Consensus 158 m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 158 Y-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred E-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 3 2222 22233455555432 2346789998 35555444433 455553
No 299
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.87 E-value=1.4e+02 Score=32.50 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHHHHHhh-----cCCEEEEEcCCCC----CHHHHhc--CCeEEEecCch--HHHHHhcCEEEec
Q 001896 856 ADAVRSFQK-----DGSIVAMVGDGIN----DSPALAA--ADVGMAIGAGT--DIAIEAADYVLMR 908 (998)
Q Consensus 856 ~~~v~~l~~-----~g~~v~~vGDg~n----D~~al~~--A~vgia~~~~~--~~~~~~ad~vl~~ 908 (998)
..+++.|+. .|+.|+.+|.+.. =+.+|.+ |.|-++-.... ......||+++..
T Consensus 142 ~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~A 207 (284)
T PRK14170 142 AGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVA 207 (284)
T ss_pred HHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEe
Confidence 345555554 4889999999843 1234433 45555554322 2345678998864
No 300
>PRK15108 biotin synthase; Provisional
Probab=33.67 E-value=4.9e+02 Score=29.29 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=51.2
Q ss_pred HhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcce----------EEEec----CcccHHHHHHHHhhcCCEEE--
Q 001896 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----------VMADV----MPAGKADAVRSFQKDGSIVA-- 870 (998)
Q Consensus 807 ~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~----------~~~~~----~p~~K~~~v~~l~~~g~~v~-- 870 (998)
+...++++.+|+.|+.+.+--|.-......-.++.|++. .|.++ +.+++.+.++..++.|-.+.
T Consensus 111 e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg 190 (345)
T PRK15108 111 PYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSG 190 (345)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeE
Confidence 778899999999999876555665566666677889983 33333 34467788888888886554
Q ss_pred -EEcCCCCC
Q 001896 871 -MVGDGIND 878 (998)
Q Consensus 871 -~vGDg~nD 878 (998)
++|=|..+
T Consensus 191 ~i~GlgEt~ 199 (345)
T PRK15108 191 GIVGLGETV 199 (345)
T ss_pred EEEeCCCCH
Confidence 77777554
No 301
>PRK09577 multidrug efflux protein; Reviewed
Probab=33.63 E-value=1.4e+02 Score=39.26 Aligned_cols=118 Identities=13% Similarity=0.223 Sum_probs=69.1
Q ss_pred hhhHHhhhcCCCCceeeeeecCCC--eEEEEeCCCCCCHH----HHHHHHHhc--CCcee-------eeccCCccceeee
Q 001896 143 VNSVEGILRGLPGVKRAVVALATS--LGEVEYDPTVISKD----DIANAIEDA--GFEAS-------FVQSSGQDKILLQ 207 (998)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~~~~--~~~v~~d~~~~~~~----~i~~~i~~~--G~~~~-------~~~~~~~~~~~~~ 207 (998)
...+|+.|+.++|+++++-....+ .+.++|+.+. +.+ ++.+.+++. .++.. ...........+.
T Consensus 62 t~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~~~~~~~~~~~~~~~~~~~~~ 140 (1032)
T PRK09577 62 TALIEREMNGAPGLLYTSATSSAGQASLSLTFKQGV-NADLAAVEVQNRLKTVEARLPEPVRRDGIQVEKAADNIQLIVS 140 (1032)
T ss_pred HHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCcccccCCceEeccCCCceEEEE
Confidence 367899999999999876554444 5567777653 333 444555432 12211 1011111122334
Q ss_pred ecCc----cch---h-hhhHHHhhhhcCCCceeEEeecCCCeEEEEecCCC-----CCccccccccc
Q 001896 208 VTGV----LCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIA 261 (998)
Q Consensus 208 v~gm----~c~---~-ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~y~~~~-----~~~~~i~~~i~ 261 (998)
+.+- +-. . -+..++..|.+.+||.+++++.....+.|..||.. ++..++.+.|.
T Consensus 141 l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~ 207 (1032)
T PRK09577 141 LTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVR 207 (1032)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHH
Confidence 4331 111 1 13578999999999999999886666778777764 45555555553
No 302
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=33.21 E-value=1.8e+02 Score=23.91 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=40.9
Q ss_pred eeeccccChhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001896 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (998)
Q Consensus 132 l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~ 196 (998)
+.+.|+.|+.=.-+..+++++++. .+.+.|..|.. ...++|....++.||.....
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~-~a~~di~~~~~~~G~~~~~~ 56 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDP-GFARDAQAWCKSTGNTLISL 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCc-cHHHHHHHHHHHcCCEEEEE
Confidence 456799999999999999988752 23344554433 46789999999999998643
No 303
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.53 E-value=3.3e+02 Score=28.84 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=67.2
Q ss_pred CcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHH-hCcce---E------EE--ecCcccHHHHHHHHhh--------
Q 001896 805 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE-IGIQD---V------MA--DVMPAGKADAVRSFQK-------- 864 (998)
Q Consensus 805 ~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~-~gi~~---~------~~--~~~p~~K~~~v~~l~~-------- 864 (998)
+|++..+....|++.+|++.+.|..--.....+-++ .+... + |. ...-.-+..++..+.+
T Consensus 139 lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~~ 218 (298)
T KOG3128|consen 139 LREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQNE 218 (298)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHHHhh
Confidence 688999999999999999999885544444444433 33321 0 00 0000011222222211
Q ss_pred --------cCCEEEEEcCCCCCHHHHhcC-C----eEEEecCc-----hHHHHHhcCEEEecCChhHHHHHH
Q 001896 865 --------DGSIVAMVGDGINDSPALAAA-D----VGMAIGAG-----TDIAIEAADYVLMRNSLEDVIIAI 918 (998)
Q Consensus 865 --------~g~~v~~vGDg~nD~~al~~A-~----vgia~~~~-----~~~~~~~ad~vl~~~~~~~l~~~i 918 (998)
.+..|...||.+.|.-|-..+ + .-|..++. -+.-.++-|+++..|....++.-+
T Consensus 219 s~yf~~~~~~~nVillGdsigdl~ma~gv~~~~~iLkig~l~d~vee~~~~ymd~ydIvL~~D~tldv~~s~ 290 (298)
T KOG3128|consen 219 SEYFHQLAGRVNVILLGDSIGDLHMADGVPRVGHILKIGYLNDSVEEALEKYMDSYDIVLVHDETLDVANSI 290 (298)
T ss_pred hHHHhhccCCceEEEeccccccchhhcCCcccccceeeecccchHHHHHHHHHhhcceEEecCcccchhHHH
Confidence 256799999999998775332 1 12333321 234567889999998877766544
No 304
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=32.53 E-value=2e+02 Score=31.58 Aligned_cols=80 Identities=23% Similarity=0.251 Sum_probs=52.4
Q ss_pred hhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchhccccCCCCCCCCcceeeeeeeccc
Q 001896 58 AACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGM 137 (998)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~l~i~gm 137 (998)
..|+..+++.++..|||.++++- ...+...+..+..|+. .....++++ =.+.+..+++.
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~~--------------sre~~l~~L~~~lg~~-~~~~l~~nP-----LP~~~vV~~~~- 129 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRFI--------------SREEALKELQPWLGFG-ALLMLDENP-----LPDVFVVTPDD- 129 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEEe--------------CHHHHHHHHHHHcCch-hhhcCCCCC-----CCceEEEEeCC-
Confidence 88999999999999999877652 1245566667777887 332222111 11223344433
Q ss_pred cChhhhhhHHhhhcCCCCceeee
Q 001896 138 TCAACVNSVEGILRGLPGVKRAV 160 (998)
Q Consensus 138 ~C~~C~~~ie~~l~~~~GV~~~~ 160 (998)
+.-...+.+++++++||.+++
T Consensus 130 --p~~~~~i~~~l~~l~gV~~V~ 150 (297)
T COG2177 130 --PPQVKAIAAALRDLPGVAEVD 150 (297)
T ss_pred --CccHHHHHHHHHcCccceehh
Confidence 556677888899999998743
No 305
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=32.49 E-value=95 Score=30.18 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=39.2
Q ss_pred hhHHHHHHHhhcCCCCeeEEEEeeccc-------------------EEEEEECCCCCChHHHHHHHHh
Q 001896 58 AACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNAIED 106 (998)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~l~~~-------------------~~~v~~~~~~~~~~~i~~~i~~ 106 (998)
++|=|.+|....+++||.++.+-+..+ .+.|.||+..++.+++.+..=+
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~ 74 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWE 74 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHH
Confidence 689999999999999999998854333 4667889998888888886543
No 306
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=32.22 E-value=2.4e+02 Score=33.56 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=56.7
Q ss_pred CCCChHHHHHHHHhcCccchhcc-----cc-CCCCCCCCcceeeeeeeccccChhhhhhHHhhhcCCCCceeeeeecCCC
Q 001896 93 DLVKDEDIKNAIEDAGFEAEILA-----ES-STSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATS 166 (998)
Q Consensus 93 ~~~~~~~i~~~i~~~Gy~~~~~~-----~~-~~~~~~~~~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~ 166 (998)
+..+.+++.+.++..-++..... ++ ......+.+..++. --++|-|-+|..+.+++||.++++-+..+
T Consensus 158 G~~~~eeL~a~Ie~~~~~~~~~~~~~~~~~~q~~d~~~~~~~~~~------~agGCFWg~e~~f~~~~GV~~t~~GYagG 231 (521)
T PRK14018 158 GSISEAQALALIRNPNADLGSLKHSYYKPDGQKKDSKIMNTRTIY------LAGGCFWGLEAYFQRIDGVVDAVSGYANG 231 (521)
T ss_pred CCCCHHHHHHHHHHhhhhhHHhhhhhccccCCccccCCCCccEEE------EecCCchhhHHHHccCCCEEEEEEeeCCC
Confidence 34677888888886555432211 11 11111111122222 23578888999999999999988866544
Q ss_pred ------------------eEEEEeCCCCCCHHHHHHHH
Q 001896 167 ------------------LGEVEYDPTVISKDDIANAI 186 (998)
Q Consensus 167 ------------------~~~v~~d~~~~~~~~i~~~i 186 (998)
.+.|.|||..++.++|++..
T Consensus 232 ~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f 269 (521)
T PRK14018 232 NTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYY 269 (521)
T ss_pred CCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHH
Confidence 37899999999999998855
No 307
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.01 E-value=89 Score=27.13 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=36.6
Q ss_pred CHHHHHHHHHhcCCceeeeccCCccceeeeecCccchhhhhHHHhhhhcCCCceeEEeecCCCeEEEEe
Q 001896 178 SKDDIANAIEDAGFEASFVQSSGQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLF 246 (998)
Q Consensus 178 ~~~~i~~~i~~~G~~~~~~~~~~~~~~~~~v~gm~c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~y 246 (998)
+++.|.+.++++||.++...+ ..+...||++.+++++.++++.|..
T Consensus 13 ~~dri~~~l~e~g~~v~~eGD-----------------------~ivas~pgis~ieik~E~kkL~v~t 58 (96)
T COG4004 13 DPDRIMRGLSELGWTVSEEGD-----------------------RIVASSPGISRIEIKPENKKLLVNT 58 (96)
T ss_pred CHHHHHHHHHHhCeeEeeccc-----------------------EEEEecCCceEEEEecccceEEEec
Confidence 688999999999998764211 1344678999999999999999875
No 308
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.62 E-value=1.8e+02 Score=24.90 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=34.3
Q ss_pred EEEecCCCcHhHHHHHHHHHhCCCEEEE-EcCCCHHHHHHHHHHhCcc
Q 001896 798 VMGIADPVKREAAVVVEGLLKMGVRPVM-VTGDNWRTAHAVAREIGIQ 844 (998)
Q Consensus 798 ~i~l~d~~r~~~~~~i~~l~~~gi~~~i-~tgd~~~~a~~ia~~~gi~ 844 (998)
++.+.+..++.+.+..+.||+.|+++.+ ..+.+...-..-|++.|+.
T Consensus 6 ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 6 VIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 3445667788889999999999999877 4566666666666666664
No 309
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=30.47 E-value=1.2e+02 Score=29.72 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=40.1
Q ss_pred hhHHHHHHHhhcCCCCeeEEEEeeccc-------------------EEEEEECCCCCChHHHHHHHHhc
Q 001896 58 AACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNAIEDA 107 (998)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~l~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 107 (998)
++|=|.+|....+++||.+..+-+..+ .+.|.||+..++.+++.+..-+.
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~ 75 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRI 75 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHh
Confidence 689999999999999999999866544 46678898888888888766543
No 310
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=30.39 E-value=54 Score=27.86 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=31.7
Q ss_pred chhhhhHHHhhhhcCCCceeEEeecCCCeEEEEecCCCCCcccccccccccC
Q 001896 213 CELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRS 264 (998)
Q Consensus 213 c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~y~~~~~~~~~i~~~i~~~g 264 (998)
.+.-|...+-.|+..++|-.+-+|.-+....|-||+..++.+++++.++...
T Consensus 9 t~eeA~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~k 60 (88)
T PF11491_consen 9 TPEEAMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFK 60 (88)
T ss_dssp TTTTTHHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTT
T ss_pred CHHHHHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcC
Confidence 3456778888999999999999999999999999999999999999888765
No 311
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.31 E-value=2.5e+02 Score=23.03 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=41.3
Q ss_pred CChHHHHHHHHhcCccchhccccCCCCCCCCcceeeeeeeccccChhhhhhHHhhhcCCCCceeeee
Q 001896 95 VKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV 161 (998)
Q Consensus 95 ~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v 161 (998)
-...++...+.+.|-.+........ ........+.++.-+=......+-+.|++++||.++.+
T Consensus 12 g~l~~I~~~la~~~inI~~i~~~~~----~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 12 GVLSKVLNTIAQVRGNVLTINQNIP----IHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred chHHHHHHHHHHcCCCEEEEEeCCC----CCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 3567899999999888765543211 11233445555442223366888899999999998875
No 312
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=30.31 E-value=9.8e+02 Score=28.34 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=81.3
Q ss_pred eEEEEeCCCCCCCCEEEEcCCCcccccEEEEeccee-eecccccCcCcccccCCCCceecceeeeeceEEEEEEEecChh
Q 001896 450 EEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDA 528 (998)
Q Consensus 450 ~~~~i~~~~l~~GDii~v~~G~~iPaDg~vl~G~~~-Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t 528 (998)
....+...|..|-|.++++. ..-+|--.+.|++. +.-. .|+. ...|..++.|+....=.....- ....
T Consensus 56 Div~v~~G~~iP~Dg~vl~g--~~~vdes~LTGEs~pv~k~--~g~~----v~~gs~~~~G~~~~~v~~~~~~---s~~~ 124 (499)
T TIGR01494 56 DIVLVKSGEIVPADGVLLSG--SCFVDESNLTGESVPVLKT--AGDA----VFAGTYVFNGTLIVVVSATGPN---TFGG 124 (499)
T ss_pred CEEEECCCCEeeeeEEEEEc--cEEEEcccccCCCCCeeec--cCCc----cccCcEEeccEEEEEEEEeccc---cHHH
Confidence 45778888899999998866 45556566667764 3322 1443 3578888889876532211111 1111
Q ss_pred HHHHHHHHHHHhhcc-CChHHHHH-HHHHHhHHHHHHHHHHHHHHHHH----HHhhcCCCCCcccCCCCccHHHHHHHHh
Q 001896 529 VLSQIISLVETAQMS-KAPIQKFA-DFVASIFVPIVVTLALFTWLCWY----VAGVLGAYPEQWLPENGTHFVFALMFSI 602 (998)
Q Consensus 529 ~~~~i~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~l~~a~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i 602 (998)
.++.+.+.-.+.+.. .....+.. ..+..+.+.+++++.++.+..+. +. ..+..++...+
T Consensus 125 ~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~---------------~~~~~~~~vl~ 189 (499)
T TIGR01494 125 KIAVVVYTGFETKTPLQPKLDRLSDIIFILFVLLIALAVFLFWAIGLWDPNSIF---------------KIFLRALILLV 189 (499)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHH---------------HHHHHHHHHHH
Confidence 122222222221122 22233333 34444433333333333222211 11 13566777888
Q ss_pred hhhhhhccccchhhHHHHHHHHHH
Q 001896 603 SVVVIACPCALGLATPTAVMVATG 626 (998)
Q Consensus 603 svlv~~~P~aL~la~p~~~~~~~~ 626 (998)
.....+.|.+++++.-.+.....+
T Consensus 190 ~~~P~aL~~~~~~~~~~~~~~~~~ 213 (499)
T TIGR01494 190 IAIPIALPLAVTIALAVGDARLAK 213 (499)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHH
Confidence 888889999999888888776654
No 313
>PRK08508 biotin synthase; Provisional
Probab=30.01 E-value=4.8e+02 Score=28.25 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCC--CEEEEEcCCCHHHHHHHHHHhCcceEEE
Q 001896 771 HVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMG--VRPVMVTGDNWRTAHAVAREIGIQDVMA 848 (998)
Q Consensus 771 ~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~g--i~~~i~tgd~~~~a~~ia~~~gi~~~~~ 848 (998)
++.+...+..+.|.+-+.+..++. .+.++.-+.+.++++.+|+.+ +.++...|..........++.|++.+..
T Consensus 44 eI~~~a~~a~~~g~~~~~lv~sg~-----~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 44 QIVQEAKMAKANGALGFCLVTSGR-----GLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----CCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcc
Confidence 334444444455665554432222 134445567788889998875 4555567887777777778888875432
Q ss_pred ----------e----cCcccHHHHHHHHhhcCCEE---EEEcCCCCC
Q 001896 849 ----------D----VMPAGKADAVRSFQKDGSIV---AMVGDGIND 878 (998)
Q Consensus 849 ----------~----~~p~~K~~~v~~l~~~g~~v---~~vGDg~nD 878 (998)
+ -+++++.+.++..++.|-.+ +++|-|-++
T Consensus 119 ~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ 165 (279)
T PRK08508 119 NLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESW 165 (279)
T ss_pred cccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCH
Confidence 2 23466777888888777543 567766543
No 314
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=29.95 E-value=1.8e+02 Score=31.72 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=57.8
Q ss_pred EEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhC----CCEEEEEcCC----CHHHHHHHHHHhCcc----eEEEecCcc
Q 001896 786 GILVAYDDNLIGVMGIADPVKREAAVVVEGLLKM----GVRPVMVTGD----NWRTAHAVAREIGIQ----DVMADVMPA 853 (998)
Q Consensus 786 ~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~----gi~~~i~tgd----~~~~a~~ia~~~gi~----~~~~~~~p~ 853 (998)
.++++.| +=|++..--.+-+++.++++.|.+. .|.++.+|.- ....|..+.+.+|.+ ++...-+|-
T Consensus 35 ~fgfafD--IDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSHsP~ 112 (389)
T KOG1618|consen 35 TFGFAFD--IDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSHSPF 112 (389)
T ss_pred ceeEEEe--cccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhcChH
Confidence 4566666 5677777788889999999999887 6888999843 244578888999974 333333442
Q ss_pred cHHHHHHHHhhcCCEEEEEcCC
Q 001896 854 GKADAVRSFQKDGSIVAMVGDG 875 (998)
Q Consensus 854 ~K~~~v~~l~~~g~~v~~vGDg 875 (998)
.+ ++ ..+.+.|+++|+|
T Consensus 113 r~--l~---~~~~k~vLv~G~~ 129 (389)
T KOG1618|consen 113 RL--LV---EYHYKRVLVVGQG 129 (389)
T ss_pred HH--Hh---hhhhceEEEecCC
Confidence 22 11 1345689999987
No 315
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=29.87 E-value=1e+02 Score=27.26 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=45.1
Q ss_pred eEEEEEeCCCCChhHHHHHHHhhcCCCCeeEEEE-----eecccEEEEEECCCCCChHHHHHHHHhcCccchhc
Q 001896 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASV-----ALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (998)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v-----~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (998)
+++.|.|--.+-+ -.--+-++|.+++||..+.+ +..+....+......++.+++.+++++.|-.++.+
T Consensus 5 rRlVLDVlKP~~p-~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSI 77 (95)
T PF02680_consen 5 RRLVLDVLKPHEP-SIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSI 77 (95)
T ss_dssp EEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEE
T ss_pred eEEEEEeecCCCC-CHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEee
Confidence 4444444443322 23456678999999988775 45666777777777789999999999999877543
No 316
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=29.75 E-value=1.7e+02 Score=38.47 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=71.9
Q ss_pred hhhHHhhhcCCCCceeeeeecC---CCeEEEEeCCCCCCHH----HHHHHHHhcC--Cceee-------eccCCccceee
Q 001896 143 VNSVEGILRGLPGVKRAVVALA---TSLGEVEYDPTVISKD----DIANAIEDAG--FEASF-------VQSSGQDKILL 206 (998)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~~---~~~~~v~~d~~~~~~~----~i~~~i~~~G--~~~~~-------~~~~~~~~~~~ 206 (998)
...+|+.+..++|+++++-... ...+.++|+.+. +.+ ++.+.+++.. ++... .......-..+
T Consensus 62 t~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g~-d~~~a~~~V~~~i~~~~~~LP~~~~~~~~~~~~~~~~~v~~~ 140 (1049)
T PRK15127 62 TQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGT-DADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVV 140 (1049)
T ss_pred hHHHHHHhcCCCCceEEEEEecCCceEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcccCCCcEEecCCCCceEEE
Confidence 3678999999999999886542 335778887763 444 4555555431 22111 00011111233
Q ss_pred eecC----ccch---h-hhhHHHhhhhcCCCceeEEeecCCCeEEEEecCCC-----CCccccccccc
Q 001896 207 QVTG----VLCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIA 261 (998)
Q Consensus 207 ~v~g----m~c~---~-ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~y~~~~-----~~~~~i~~~i~ 261 (998)
.+.+ +.-. . -...++..|.+++||.++++......+.|..||.. ++..++...+.
T Consensus 141 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~V~~~l~ 208 (1049)
T PRK15127 141 GVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIK 208 (1049)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHHHHHHHH
Confidence 3322 1111 1 13468899999999999999877777899999864 55556555554
No 317
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=29.12 E-value=2.4e+02 Score=35.55 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhhhccccchhhHHHHHHHHHHH
Q 001896 594 FVFALMFSISVVVIACPCALGLATPTAVMVATGV 627 (998)
Q Consensus 594 ~~~~~~~~isvlv~~~P~aL~la~p~~~~~~~~~ 627 (998)
+..++...++....+.|.++++++..+.....++
T Consensus 237 ~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~ 270 (755)
T TIGR01647 237 LQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKK 270 (755)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhC
Confidence 4556777888888899999999888887665544
No 318
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.06 E-value=2.2e+02 Score=31.04 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=31.5
Q ss_pred HHHHHHHhh-----cCCEEEEEcCCCC----CHHHHhcCC--eEEEecCch--HHHHHhcCEEEec
Q 001896 856 ADAVRSFQK-----DGSIVAMVGDGIN----DSPALAAAD--VGMAIGAGT--DIAIEAADYVLMR 908 (998)
Q Consensus 856 ~~~v~~l~~-----~g~~v~~vGDg~n----D~~al~~A~--vgia~~~~~--~~~~~~ad~vl~~ 908 (998)
..+++.|+. .|+.|+.+|.|.. =+.+|...+ |-++-.... ......||+++..
T Consensus 143 ~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 143 YGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAA 208 (285)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEc
Confidence 345555554 4789999999855 123444444 444443222 2345789999865
No 319
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=28.81 E-value=1.5e+02 Score=38.84 Aligned_cols=119 Identities=13% Similarity=0.193 Sum_probs=71.2
Q ss_pred hhhHHhhhcCCCCceeeeeec---CCCeEEEEeCCCCCCH----HHHHHHHHhc--CCcee-------eeccCCccceee
Q 001896 143 VNSVEGILRGLPGVKRAVVAL---ATSLGEVEYDPTVISK----DDIANAIEDA--GFEAS-------FVQSSGQDKILL 206 (998)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~---~~~~~~v~~d~~~~~~----~~i~~~i~~~--G~~~~-------~~~~~~~~~~~~ 206 (998)
...+|+.++.++||++++-.. ....+.++|+++. +. .++.+.++.. .++.. ........-..+
T Consensus 62 t~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~~-d~~~a~~~v~~~l~~~~~~LP~~~~~~~~~~~~~~~~~~~~i 140 (1044)
T TIGR00915 62 TQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQGT-DPDIAQVQVQNKLQLATPLLPQEVQRQGVRVEKASSNFLMVI 140 (1044)
T ss_pred HHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcccCCCcEEeCCCCCceEEE
Confidence 356788899999999887644 2346677776653 32 3455555532 22211 001111112233
Q ss_pred eecCc----cch---h-hhhHHHhhhhcCCCceeEEeecCCCeEEEEecCCC-----CCcccccccccc
Q 001896 207 QVTGV----LCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (998)
Q Consensus 207 ~v~gm----~c~---~-ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~y~~~~-----~~~~~i~~~i~~ 262 (998)
.+.+- +-. . -...++..|.+.+||.++++......+.|..||.. ++..++.+.|+.
T Consensus 141 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~dV~~~i~~ 209 (1044)
T TIGR00915 141 GLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPADVISAIQA 209 (1044)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 33331 111 1 23568899999999999999888777899999864 555666665553
No 320
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=28.74 E-value=82 Score=30.91 Aligned_cols=48 Identities=38% Similarity=0.540 Sum_probs=39.7
Q ss_pred hhhhhhHHhhhcCCCCceeeeeecCC-------------------CeEEEEeCCCCCCHHHHHHHHH
Q 001896 140 AACVNSVEGILRGLPGVKRAVVALAT-------------------SLGEVEYDPTVISKDDIANAIE 187 (998)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~-------------------~~~~v~~d~~~~~~~~i~~~i~ 187 (998)
.+|-|.+|.+..+++||...+|-+.. +.+.|+|||..++.++|.+..=
T Consensus 31 ~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw 97 (191)
T KOG1635|consen 31 AGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFW 97 (191)
T ss_pred ccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHH
Confidence 57899999999999999888886643 3578999999999999888653
No 321
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=28.73 E-value=4.6e+02 Score=26.55 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=49.5
Q ss_pred HhHHHHHHHHHhCCCEEEE--EcCCCHHHHHHHHHHhCcceEEEec--Cccc-----HHHHHHHHhhcCCEEEEEcCCCC
Q 001896 807 REAAVVVEGLLKMGVRPVM--VTGDNWRTAHAVAREIGIQDVMADV--MPAG-----KADAVRSFQKDGSIVAMVGDGIN 877 (998)
Q Consensus 807 ~~~~~~i~~l~~~gi~~~i--~tgd~~~~a~~ia~~~gi~~~~~~~--~p~~-----K~~~v~~l~~~g~~v~~vGDg~n 877 (998)
....+.++.+++.|+++.+ ++-.+...+.. +...|.+-+.... .+.. -.+.++.+++....-.+++-|+|
T Consensus 90 ~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~ 168 (202)
T cd04726 90 STIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT 168 (202)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC
Confidence 3567899999999999885 67777777776 6667776543321 1111 13455555542333344455665
Q ss_pred --CHHHHhcCC-eEEEecC
Q 001896 878 --DSPALAAAD-VGMAIGA 893 (998)
Q Consensus 878 --D~~al~~A~-vgia~~~ 893 (998)
++..+..++ -++.+|+
T Consensus 169 ~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 169 PDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred HHHHHHHHhcCCCEEEEee
Confidence 444444443 2455553
No 322
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=28.54 E-value=2.9e+02 Score=28.17 Aligned_cols=50 Identities=14% Similarity=0.247 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHhCcceEEEecCcc------cHHHHHHHHhhcCCEEEEEcCCCCCH
Q 001896 830 NWRTAHAVAREIGIQDVMADVMPA------GKADAVRSFQKDGSIVAMVGDGINDS 879 (998)
Q Consensus 830 ~~~~a~~ia~~~gi~~~~~~~~p~------~K~~~v~~l~~~g~~v~~vGDg~nD~ 879 (998)
+...++.+|+.+|++.+...+.+. +-.+.++.++++|-..+..||-.-|.
T Consensus 46 ~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~vv~G~i~sd~ 101 (194)
T cd01994 46 NHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDAVVFGAILSEY 101 (194)
T ss_pred CHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEECccccHH
Confidence 566788889999988666554331 11123444444456667777765443
No 323
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=28.54 E-value=1.4e+02 Score=31.20 Aligned_cols=86 Identities=16% Similarity=0.066 Sum_probs=59.3
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhC-cce-----EE--Ee------cCcccHHHHHHHHhhcC-CE
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIG-IQD-----VM--AD------VMPAGKADAVRSFQKDG-SI 868 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~g-i~~-----~~--~~------~~p~~K~~~v~~l~~~g-~~ 868 (998)
.+-||+.+.++.|+..|+.+.++|+.+..+...-.+..+ +-. ++ .. ..|+-=+...+.+.... +.
T Consensus 92 ~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~k 171 (222)
T KOG2914|consen 92 ILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPSK 171 (222)
T ss_pred ccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCccc
Confidence 345699999999999999999999986666555444444 321 22 00 11222234555566566 88
Q ss_pred EEEEcCCCCCHHHHhcCCeEE
Q 001896 869 VAMVGDGINDSPALAAADVGM 889 (998)
Q Consensus 869 v~~vGDg~nD~~al~~A~vgi 889 (998)
++++.|..+=..|.++|+--+
T Consensus 172 ~lVfeds~~Gv~aa~aagm~v 192 (222)
T KOG2914|consen 172 CLVFEDSPVGVQAAKAAGMQV 192 (222)
T ss_pred eEEECCCHHHHHHHHhcCCeE
Confidence 999999999999999988443
No 324
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=28.53 E-value=3.4e+02 Score=24.76 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=47.3
Q ss_pred EEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcc-cHHHHHHHHhhcCCE--EEEEcC
Q 001896 798 VMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPA-GKADAVRSFQKDGSI--VAMVGD 874 (998)
Q Consensus 798 ~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~-~K~~~v~~l~~~g~~--v~~vGD 874 (998)
++...|.-+++..+..+.|.+.|+++. .|+ .|+..+. +.|++--.-.--++ ...++.+.++++|+. |..+-|
T Consensus 3 ~isv~d~~K~~~~~~a~~l~~~G~~i~-AT~---gTa~~L~-~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 3 FLSVSDHVKAMLVDLAPKLSSDGFPLF-ATG---GTSRVLA-DAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred EEEEEcccHHHHHHHHHHHHHCCCEEE-ECc---HHHHHHH-HcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 567888999999999999999999985 665 3555554 47875322111123 346677777653543 344444
Q ss_pred CCC
Q 001896 875 GIN 877 (998)
Q Consensus 875 g~n 877 (998)
+.+
T Consensus 78 ~~~ 80 (112)
T cd00532 78 PRR 80 (112)
T ss_pred CCc
Confidence 433
No 325
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=27.62 E-value=3.9e+02 Score=25.53 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=53.9
Q ss_pred ECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcC--CCHHHHHHHHHHhCcceE--EEecCcccHHHHHHHHh
Q 001896 791 YDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTG--DNWRTAHAVAREIGIQDV--MADVMPAGKADAVRSFQ 863 (998)
Q Consensus 791 ~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tg--d~~~~a~~ia~~~gi~~~--~~~~~p~~K~~~v~~l~ 863 (998)
.+|+++-+...++--+.+ .|+.+.+.|..+++.|- ..+.+++.++..+|-.-+ -.+++-++|.++.+.+.
T Consensus 50 L~G~~l~l~S~R~~~~~e---vi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ly~P~~dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 50 LDGELLDLKSSRNMSRSE---VIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVLYTPERDLSVEEKQELAREYS 123 (138)
T ss_pred cCCcEEEEEeecCCCHHH---HHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcccCCCCcCCHHHHHHHHHhhC
Confidence 488888888888776655 56666778999999984 678999999999986422 33567788988888765
No 326
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=27.56 E-value=9.9e+02 Score=31.52 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=11.1
Q ss_pred cCCCccccCceEEEEEEecC
Q 001896 653 DKTGTLTQGRATVTTAKVFT 672 (998)
Q Consensus 653 DKTGTLT~~~~~v~~i~~~~ 672 (998)
|.+||.++=.+.-+.+...+
T Consensus 946 ~~~GtV~~I~lRsT~Irt~D 965 (1109)
T PRK10929 946 DLTGSVTKINTRATTISDWD 965 (1109)
T ss_pred CEEEEEEEEeeeEEEEEeCC
Confidence 35666666555555555444
No 327
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.28 E-value=1.8e+02 Score=31.94 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=30.6
Q ss_pred HHHHHHHhh-----cCCEEEEEcCCCC-C---HHHHhcCCeEEEecC----chHHHHHhcCEEEec
Q 001896 856 ADAVRSFQK-----DGSIVAMVGDGIN-D---SPALAAADVGMAIGA----GTDIAIEAADYVLMR 908 (998)
Q Consensus 856 ~~~v~~l~~-----~g~~v~~vGDg~n-D---~~al~~A~vgia~~~----~~~~~~~~ad~vl~~ 908 (998)
..+++.|+. .|+.|+++|-+.. = +..|..++..+.+-+ ..+.+...||+++..
T Consensus 143 ~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 143 LGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAA 208 (296)
T ss_pred HHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEe
Confidence 345555554 4889999995422 2 224455666655542 233445678888864
No 328
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=27.16 E-value=6.6e+02 Score=30.13 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=52.0
Q ss_pred HhHHHHHHHHHhCCCEEEEEcC-CCHHHHHHHHHHhCcc-eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCC
Q 001896 807 REAAVVVEGLLKMGVRPVMVTG-DNWRTAHAVAREIGIQ-DVMADVMPAGKADAVRSFQKDGSIVAMVGDGIN 877 (998)
Q Consensus 807 ~~~~~~i~~l~~~gi~~~i~tg-d~~~~a~~ia~~~gi~-~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~n 877 (998)
-|+..++..+++.+-++.+++= .....+..++.-++++ ..+.-.++++=...++.++++|.. +.|||+.-
T Consensus 84 ~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~-~viG~~~~ 155 (526)
T TIGR02329 84 FDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIG-AVVGAGLI 155 (526)
T ss_pred hhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCC-EEECChHH
Confidence 4567778788887778887764 4456688888888886 345555677778899999999974 56799844
No 329
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=27.13 E-value=2.2e+02 Score=33.12 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=46.5
Q ss_pred HhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcc--cH---HHHHHHHhhcCCE
Q 001896 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPA--GK---ADAVRSFQKDGSI 868 (998)
Q Consensus 807 ~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~--~K---~~~v~~l~~~g~~ 868 (998)
+...+.=++|++.|+++.+..|+.......+++++++..++.+-.++ ++ ..+.+.+++.|-.
T Consensus 61 esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~ 127 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGIH 127 (429)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCce
Confidence 44455567888999999999999999999999999999999886543 22 2344455555544
No 330
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.95 E-value=2.1e+02 Score=31.15 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=30.8
Q ss_pred HHHHHHhh-----cCCEEEEEcCCCC----CHHHHh--cCCeEEEecCchH--HHHHhcCEEEec
Q 001896 857 DAVRSFQK-----DGSIVAMVGDGIN----DSPALA--AADVGMAIGAGTD--IAIEAADYVLMR 908 (998)
Q Consensus 857 ~~v~~l~~-----~g~~v~~vGDg~n----D~~al~--~A~vgia~~~~~~--~~~~~ad~vl~~ 908 (998)
.+++.|+. .|+.|+.+|.|.. =+.+|. .|.|-++-....+ .....||+++..
T Consensus 143 avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~A 207 (285)
T PRK14191 143 GVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVG 207 (285)
T ss_pred HHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEe
Confidence 34554443 3899999999922 222343 3556665543333 345789998864
No 331
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=26.25 E-value=1.4e+02 Score=33.66 Aligned_cols=91 Identities=24% Similarity=0.315 Sum_probs=60.3
Q ss_pred CCeEEEEEE-CCeEEEEEEecCCCcHhHHHHHHHHHhCCCE--EEEEcCCC-HHHHHHHHHHhCcce--EEEecCcccHH
Q 001896 783 ARTGILVAY-DDNLIGVMGIADPVKREAAVVVEGLLKMGVR--PVMVTGDN-WRTAHAVAREIGIQD--VMADVMPAGKA 856 (998)
Q Consensus 783 g~~~i~va~-~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~--~~i~tgd~-~~~a~~ia~~~gi~~--~~~~~~p~~K~ 856 (998)
....+|+-+ +++..|-|=. .|+..++.+|-+.+.+ ++-.|+-| ...+..-|+++|++- ++-..+|..|
T Consensus 79 ~g~~vyLK~E~lQpsgSFK~-----RGa~~~~~kla~~~~~~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~k- 152 (457)
T KOG1250|consen 79 AGMPVYLKREDLQPSGSFKI-----RGAGNALQKLAKQQKKAGVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMK- 152 (457)
T ss_pred cCCceEEEehhcccccceeh-----hhHHHHHHHHHHhhhcCceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHH-
Confidence 334455544 4566665544 3788889888777644 44456554 455566678899973 5666777777
Q ss_pred HHHHHHhhcCCEEEEEcCCCCCHHH
Q 001896 857 DAVRSFQKDGSIVAMVGDGINDSPA 881 (998)
Q Consensus 857 ~~v~~l~~~g~~v~~vGDg~nD~~a 881 (998)
++.+++.|..|...|+..--+.+
T Consensus 153 --iq~~~nlGA~Vil~G~~~deAk~ 175 (457)
T KOG1250|consen 153 --IQRCRNLGATVILSGEDWDEAKA 175 (457)
T ss_pred --HHHHhccCCEEEEecccHHHHHH
Confidence 66677789999999987654443
No 332
>PRK11018 hypothetical protein; Provisional
Probab=26.16 E-value=1.7e+02 Score=24.81 Aligned_cols=56 Identities=20% Similarity=0.148 Sum_probs=42.5
Q ss_pred EEEEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchh
Q 001896 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (998)
Q Consensus 48 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (998)
.++.+.|..|+.-.-+..++|++++.-+. +.|..+. ..+...+....++.||++..
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~G~~---------L~V~~d~-~~a~~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKKGEI---------LEVVSDC-PQSINNIPLDARNHGYTVLD 64 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCCCCE---------EEEEeCC-ccHHHHHHHHHHHcCCEEEE
Confidence 46899999999999999999998853322 3333343 35677899999999999853
No 333
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=26.01 E-value=87 Score=28.96 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=29.2
Q ss_pred CcHhHHHHHHHHHhCCCE-EEEEcCCCHHHHHHHHHHhCcc
Q 001896 805 VKREAAVVVEGLLKMGVR-PVMVTGDNWRTAHAVAREIGIQ 844 (998)
Q Consensus 805 ~r~~~~~~i~~l~~~gi~-~~i~tgd~~~~a~~ia~~~gi~ 844 (998)
+.+.+.+.++++.+.|++ +|+.+|.....+...+++.|+.
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 456788999999999986 7888998888899999998874
No 334
>PLN02389 biotin synthase
Probab=25.90 E-value=4.2e+02 Score=30.23 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecC--CCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEE
Q 001896 770 DHVESFVVELEESARTGILVAYDDNLIGVMGIAD--PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM 847 (998)
Q Consensus 770 ~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d--~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~ 847 (998)
+++.+......+.|.+-+.+...++ ...+ ...+.+.++++.+++.|+.+..-.|-.........++.|++.+.
T Consensus 119 EeIl~~a~~~~~~G~~~~~ivts~r-----g~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~ 193 (379)
T PLN02389 119 DDVLEAAKRAKEAGSTRFCMGAAWR-----DTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYN 193 (379)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccc-----CCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 3344445555566666544321110 0122 23578899999999889998877787777777778888998544
Q ss_pred Eec--------------CcccHHHHHHHHhhcCCEE---EEEcCCCC
Q 001896 848 ADV--------------MPAGKADAVRSFQKDGSIV---AMVGDGIN 877 (998)
Q Consensus 848 ~~~--------------~p~~K~~~v~~l~~~g~~v---~~vGDg~n 877 (998)
..+ +.+++.+.++.+++.|-.| +++|=|..
T Consensus 194 ~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt 240 (379)
T PLN02389 194 HNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEA 240 (379)
T ss_pred eeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCC
Confidence 333 4456778889888887654 45666544
No 335
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=25.74 E-value=1.6e+03 Score=29.48 Aligned_cols=130 Identities=16% Similarity=0.208 Sum_probs=74.3
Q ss_pred HHHHHHHhhcCCCCeeEEEEeec------------ccEEEEEECCCC------CChHHHHHHHHhc--Ccc---chhccc
Q 001896 60 CSNSVEGALMGLKGVAKASVALL------------QNKADVVFDPDL------VKDEDIKNAIEDA--GFE---AEILAE 116 (998)
Q Consensus 60 C~~~ie~~l~~~~gv~~~~v~l~------------~~~~~v~~~~~~------~~~~~i~~~i~~~--Gy~---~~~~~~ 116 (998)
....+|+.+.+.++|.++..... .+...+...+.. .+.+++.+.+.+. .+. .....+
T Consensus 589 ~~~~vE~~l~~~~~v~~~~s~~g~~~~~~~~~~~~~a~i~v~l~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~ 668 (1051)
T TIGR00914 589 MQQTLEKLIKSFPEVARVFAKTGTAEIATDPMPPNASDTYIILKPESQWPEGKKTKEDLIEEIQEATVRIPGNNYEFTQP 668 (1051)
T ss_pred HHHHHHHHHhcCCCeEEEEEeecCCccCCCCCCCcceEEEEEEeccccccccCCCHHHHHHHHHHHHhhCCCcceecccC
Confidence 67889999999999988764332 122334443221 2344555444431 121 111000
Q ss_pred cCCC--CCCCCcceeeeeeeccccCh---hhhhhHHhhhcCCCCceeeeeecC--CCeEEEEeCCC-----CCCHHHHHH
Q 001896 117 SSTS--GPKPQGTIVGQYTIGGMTCA---ACVNSVEGILRGLPGVKRAVVALA--TSLGEVEYDPT-----VISKDDIAN 184 (998)
Q Consensus 117 ~~~~--~~~~~~~~~~~l~i~gm~C~---~C~~~ie~~l~~~~GV~~~~v~~~--~~~~~v~~d~~-----~~~~~~i~~ 184 (998)
.... .........+.+.+.|-+-. .-+..+++.+++++|+.+++.+.. ...+.+..|+. .++++++.+
T Consensus 669 ~~~~~~~~~~g~~~~i~i~l~G~d~~~L~~~a~~v~~~l~~~pgv~~v~~~~~~~~~e~~i~id~~~~~~~Glt~~~v~~ 748 (1051)
T TIGR00914 669 IQMRFNELISGVRSDVAVKVFGDDLDDLDATAEKISAVLKGVPGAADVKVEQTTGLPYLTVEIDREKAARYGLTVGDVQD 748 (1051)
T ss_pred hhhhHHhhccCCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCCceeeeccccCCCceEEEEECHHHHHHcCCCHHHHHH
Confidence 0000 00000112356777775433 236788999999999999998764 45677888775 368889988
Q ss_pred HHHhc
Q 001896 185 AIEDA 189 (998)
Q Consensus 185 ~i~~~ 189 (998)
.++..
T Consensus 749 ~l~~~ 753 (1051)
T TIGR00914 749 TVATA 753 (1051)
T ss_pred HHHHH
Confidence 88754
No 336
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=25.41 E-value=3.4e+02 Score=23.51 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=7.3
Q ss_pred HhHHHHHHHHHH-hcCCCe
Q 001896 419 KGKTSDAIKKLV-ELAPAT 436 (998)
Q Consensus 419 ~~k~~~~l~~l~-~~~~~~ 436 (998)
++|.++..+++. ++.|-.
T Consensus 24 qkK~~k~~~~m~~~L~~Gd 42 (84)
T TIGR00739 24 QRKRRKAHKKLIESLKKGD 42 (84)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 334444444443 333433
No 337
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=25.23 E-value=3.6e+02 Score=29.51 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=51.0
Q ss_pred cCCCcHhHHHHHHHHHhCC-CEEEEEcCCCHHHHHHHHHHhC-cceEEEecCccc--------------HH-HHHHH---
Q 001896 802 ADPVKREAAVVVEGLLKMG-VRPVMVTGDNWRTAHAVAREIG-IQDVMADVMPAG--------------KA-DAVRS--- 861 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~g-i~~~i~tgd~~~~a~~ia~~~g-i~~~~~~~~p~~--------------K~-~~v~~--- 861 (998)
+..+.+...+.|+.+|+.| +.+.++|.-.. ..+.+.+. .+.++..+..-+ .. .+++.
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L~~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~ 166 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEELKLPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEI 166 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHhccCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 7788999999999999999 79999998777 33444443 445555442111 11 23333
Q ss_pred Hhh--cCCEE--EEEcCCCCCHH
Q 001896 862 FQK--DGSIV--AMVGDGINDSP 880 (998)
Q Consensus 862 l~~--~g~~v--~~vGDg~nD~~ 880 (998)
+++ .|+.| .|+..|.||..
T Consensus 167 ~~~~~~~~~vir~tlvkg~N~~~ 189 (296)
T COG0731 167 FRSEYKGRTVIRTTLVKGINDDE 189 (296)
T ss_pred hhhcCCCcEEEEEEEeccccCCh
Confidence 344 45554 68999999876
No 338
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=25.19 E-value=2.7e+02 Score=30.41 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=49.4
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHhC--CCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhcCCEEEE
Q 001896 794 NLIGVMGIADPVKREAAVVVEGLLKM--GVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAM 871 (998)
Q Consensus 794 ~~lG~i~l~d~~r~~~~~~i~~l~~~--gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~ 871 (998)
...|.+.+..++.++.+..-+.+.+. .+.++++ ......++|+.+++.|.+|-.
T Consensus 130 ~~~g~vdl~~p~~eNl~~~A~algk~v~dltV~vL------------------------dRpRH~~lI~eiR~~Gari~L 185 (319)
T PRK09479 130 EAKGVVDLDAPVAENLRAVAKALGKDVSDLTVVVL------------------------DRPRHEELIAEIREAGARVKL 185 (319)
T ss_pred ccCCeecCCCCHHHHHHHHHHHcCCChhHeEEEEE------------------------cCchHHHHHHHHHHcCCeEEE
Confidence 45678888888777766555544322 1222222 122345799999999999999
Q ss_pred EcCCCCCHH-HHhcC----CeEEEec--CchHHHHHhc
Q 001896 872 VGDGINDSP-ALAAA----DVGMAIG--AGTDIAIEAA 902 (998)
Q Consensus 872 vGDg~nD~~-al~~A----~vgia~~--~~~~~~~~~a 902 (998)
+.|| |+. ++..+ +|=+-|| .+.+=...+|
T Consensus 186 i~DG--DVa~ai~~~~~~s~vD~~~GiGGaPEGVlaAa 221 (319)
T PRK09479 186 ISDG--DVAGAIATAFPDTGVDILMGIGGAPEGVLAAA 221 (319)
T ss_pred eccc--cHHHHHHHhcCCCCeeEEEEcCcChHHHHHHH
Confidence 9999 774 44443 3444444 4444333333
No 339
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=25.19 E-value=2.7e+02 Score=23.68 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=48.3
Q ss_pred EEEECCCCCChHHHHHHHHhcCccchhccccCCCCCCCCcceeeeeeeccccChhhhhhHHhhhcCCCCceeeee
Q 001896 87 DVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV 161 (998)
Q Consensus 87 ~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~~~v 161 (998)
.+..+..+--.+.+...+..-||.++..+-.... .+...+..+.++ -..+...+.+.|+++..|.++++
T Consensus 7 si~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~---~~~~sriti~v~---~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 7 TIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNT---DAQNINIELTVA---SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred EEEEECCccHHHHHHHHHhcCCeeeeeEEeeecC---CCCEEEEEEEEC---CCchHHHHHHHHhcCcCeEEEEE
Confidence 3333333345788999999999999766544322 333455666764 47888899999999999988875
No 340
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=25.16 E-value=2.5e+02 Score=33.09 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcc--c---HHHHHHHHhhcCCEE
Q 001896 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPA--G---KADAVRSFQKDGSIV 869 (998)
Q Consensus 807 ~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~--~---K~~~v~~l~~~g~~v 869 (998)
+...+.=+.|++.|+++.+..|++......++++.++..++....+. . ...+.+.+++.|-.+
T Consensus 55 esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~ 122 (471)
T TIGR03556 55 GCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKAVYWNLDVEPYGRKRDRAVAAALKEAGIAV 122 (471)
T ss_pred HHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHCCCEE
Confidence 44455567888999999999999999999999999999999765432 2 233566666666544
No 341
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.04 E-value=2.9e+02 Score=27.79 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=66.6
Q ss_pred HHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHh-----Ccc--eEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHH
Q 001896 810 AVVVEGLLKMGVRPVMVTGDNWRTAHAVAREI-----GIQ--DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPAL 882 (998)
Q Consensus 810 ~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~-----gi~--~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al 882 (998)
.+.++.+.+.|.++.++ |..+.++...++.+ |+. ..+.-..|++..++++.+.+.+..+++||=|.-==+.+
T Consensus 38 ~~l~~~~~~~~~~vfll-G~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~ 116 (177)
T TIGR00696 38 EELCQRAGKEKLPIFLY-GGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIW 116 (177)
T ss_pred HHHHHHHHHcCCeEEEE-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHH
Confidence 45666677778888888 55555655555444 232 11222346666778999999999999999996532222
Q ss_pred -------hcCCeEEEecCchHHH---HHhcCEEEecCChhHHHHHHHHHHHHHH
Q 001896 883 -------AAADVGMAIGAGTDIA---IEAADYVLMRNSLEDVIIAIDLSRKTFA 926 (998)
Q Consensus 883 -------~~A~vgia~~~~~~~~---~~~ad~vl~~~~~~~l~~~i~~~r~~~~ 926 (998)
....+.+++|.+-|.. +.-|--.+.+-++..+..++.+=|+..+
T Consensus 117 ~~~~~~~~~~~v~~gvGg~fd~~aG~~~rAP~w~~~~gLEWlyRl~~eP~R~~R 170 (177)
T TIGR00696 117 MRNHRHLKPDAVMIGVGGSFDVFSGLVKRAPRWLMRLGLEWLYRLRMEPWRWKR 170 (177)
T ss_pred HHHhHHhCCCcEEEEeceeeeecccCcCcCCHHHHHhCchHHHHhhhCcHHHHH
Confidence 1133556665422211 1112222233467777777777666444
No 342
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=24.97 E-value=1.4e+03 Score=28.38 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=36.9
Q ss_pred ChhhHHHHHHHHHcCCeEEEEEECC--------eEEEEEEecCCCcH-hHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHH
Q 001896 769 PDHVESFVVELEESARTGILVAYDD--------NLIGVMGIADPVKR-EAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 839 (998)
Q Consensus 769 ~~~~~~~~~~~~~~g~~~i~va~~~--------~~lG~i~l~d~~r~-~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~ 839 (998)
.++..+..+.+.+.|-+++.+.-|. +-+|+-.+.-...| +=.+.|++||+.|. ++..|||----|-++++
T Consensus 447 R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~PedK~~iV~~lQ~~G~-~VaMtGDGvNDAPALa~ 525 (679)
T PRK01122 447 KPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPEDKLALIRQEQAEGR-LVAMTGDGTNDAPALAQ 525 (679)
T ss_pred chhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHHHHHHHHHHHHcCC-eEEEECCCcchHHHHHh
Confidence 4455566666777777766665443 12333222223333 33555677777764 34556765555444443
No 343
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=24.84 E-value=3e+02 Score=25.42 Aligned_cols=64 Identities=19% Similarity=0.366 Sum_probs=39.3
Q ss_pred CCCcHhHHHHHHHHHhCCCEE---EEEcCCCHHHHH------HHHHHhCcceEEEec----CcccHHHHHHHHhhcC
Q 001896 803 DPVKREAAVVVEGLLKMGVRP---VMVTGDNWRTAH------AVAREIGIQDVMADV----MPAGKADAVRSFQKDG 866 (998)
Q Consensus 803 d~~r~~~~~~i~~l~~~gi~~---~i~tgd~~~~a~------~ia~~~gi~~~~~~~----~p~~K~~~v~~l~~~g 866 (998)
..++++.++-++.|++.|+.+ ++..||++.+.. ..|+++||.-....+ +.++=.+.++.+.+..
T Consensus 10 ~~i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~ 86 (117)
T PF00763_consen 10 KEIKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDP 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 456788899999999998764 456788877654 457889997555554 4444556666665543
No 344
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.58 E-value=3.5e+02 Score=23.64 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=37.9
Q ss_pred hHHhhhcCCCCceeeee-----ecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001896 145 SVEGILRGLPGVKRAVV-----ALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (998)
Q Consensus 145 ~ie~~l~~~~GV~~~~v-----~~~~~~~~v~~d~~~~~~~~i~~~i~~~G~~~~~~ 196 (998)
.+-..|.+++||..+.+ +..+..+.++.....++.++|.+.|++.|-.++-.
T Consensus 23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSi 79 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSI 79 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence 34466777888877654 44566666666667789999999999999877643
No 345
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=24.51 E-value=4.9e+02 Score=28.72 Aligned_cols=127 Identities=20% Similarity=0.193 Sum_probs=78.5
Q ss_pred HHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecC----
Q 001896 776 VVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM---- 851 (998)
Q Consensus 776 ~~~~~~~g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~---- 851 (998)
.......|.+++.+..+.. .+ .-.+.++++.+-|...|..++++-......+..+++...++-+=+...
T Consensus 64 e~A~~~LGg~~i~l~~~~~-----~~--~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~g~~~H 136 (305)
T PRK00856 64 ELAAKRLGADVINFSASTS-----SV--SKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVPVINAGDGSHQH 136 (305)
T ss_pred HHHHHHcCCcEEEeCCCcc-----cC--CCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHCCCCEEECCCCCCCC
Confidence 3445667888887765432 11 235788899999999988888888888889999999988865544321
Q ss_pred cccHH-HHHHHHhh----cCCEEEEEcCCCCC------HHHHhcCCeEEEecC--c--------------hHHHHHhcCE
Q 001896 852 PAGKA-DAVRSFQK----DGSIVAMVGDGIND------SPALAAADVGMAIGA--G--------------TDIAIEAADY 904 (998)
Q Consensus 852 p~~K~-~~v~~l~~----~g~~v~~vGDg~nD------~~al~~A~vgia~~~--~--------------~~~~~~~ad~ 904 (998)
|-|=+ ++....+. +|.+|++|||+.|. +.+++.-++-+.+.. + .+.+.+.||+
T Consensus 137 PtQ~LaDl~Ti~e~~G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDv 216 (305)
T PRK00856 137 PTQALLDLLTIREEFGRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADV 216 (305)
T ss_pred cHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCE
Confidence 22221 22222222 46799999999532 333344343333321 1 1356778898
Q ss_pred EEecC
Q 001896 905 VLMRN 909 (998)
Q Consensus 905 vl~~~ 909 (998)
+.+..
T Consensus 217 vyt~~ 221 (305)
T PRK00856 217 VMMLR 221 (305)
T ss_pred EEECC
Confidence 88743
No 346
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=24.50 E-value=3.6e+02 Score=26.80 Aligned_cols=57 Identities=21% Similarity=0.373 Sum_probs=37.5
Q ss_pred EEEEECCeEEEEEEecCCCcHhH-------------------------HHHHHHHHhCCCEEEEEcC--CCHHHHHHHHH
Q 001896 787 ILVAYDDNLIGVMGIADPVKREA-------------------------AVVVEGLLKMGVRPVMVTG--DNWRTAHAVAR 839 (998)
Q Consensus 787 i~va~~~~~lG~i~l~d~~r~~~-------------------------~~~i~~l~~~gi~~~i~tg--d~~~~a~~ia~ 839 (998)
.++..|++++|.+.++-.+-+.. +.++++.|+.|++-+++|- ||..+.+.|-.
T Consensus 72 ~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~ 151 (174)
T COG3981 72 WAVDEDGQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVIEA 151 (174)
T ss_pred EEEecCCcEEEEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHh
Confidence 34445789999999987664433 3456777888887777663 45666555555
Q ss_pred HhCc
Q 001896 840 EIGI 843 (998)
Q Consensus 840 ~~gi 843 (998)
.-|+
T Consensus 152 NGGi 155 (174)
T COG3981 152 NGGI 155 (174)
T ss_pred cCCE
Confidence 5554
No 347
>PRK10481 hypothetical protein; Provisional
Probab=24.34 E-value=8.4e+02 Score=25.55 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=65.8
Q ss_pred EcCeEEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecC---CCcHhHHHHHHHHHhCCCEEE
Q 001896 748 ISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIAD---PVKREAAVVVEGLLKMGVRPV 824 (998)
Q Consensus 748 ~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~d---~~r~~~~~~i~~l~~~gi~~~ 824 (998)
-+|..+.++..+.. ..+++.++.++++|...+.++.=+.|=|+-..+. .+.......+..+.. |-++.
T Consensus 63 ~dG~~v~~s~~~v~--------~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~-g~riG 133 (224)
T PRK10481 63 NDGQQVHVSKQKVE--------RDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVG-GHQVG 133 (224)
T ss_pred cCCCEEEEEHHHHH--------HHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHhcC-CCeEE
Confidence 36777888766543 3356678888999999998888776666544332 344555666666654 46788
Q ss_pred EEcCCCHHHHHHHH--HHhCcceEEEecCc-----ccHHHHHHHHhhcCC
Q 001896 825 MVTGDNWRTAHAVA--REIGIQDVMADVMP-----AGKADAVRSFQKDGS 867 (998)
Q Consensus 825 i~tgd~~~~a~~ia--~~~gi~~~~~~~~p-----~~K~~~v~~l~~~g~ 867 (998)
++|-.......... ...|++..+...+| +.-.+..+.|+..|.
T Consensus 134 VitP~~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~ga 183 (224)
T PRK10481 134 VIVPVEEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGA 183 (224)
T ss_pred EEEeCHHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCC
Confidence 88865544433222 22366555555333 233345555554443
No 348
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=24.30 E-value=1.8e+02 Score=32.46 Aligned_cols=55 Identities=33% Similarity=0.485 Sum_probs=42.1
Q ss_pred cCCCHHHHHHHHHHhCcce--EEEecCcccHHHHHHHHhhcCCEEEEEcCCCCCHHHHhc
Q 001896 827 TGDNWRTAHAVAREIGIQD--VMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAA 884 (998)
Q Consensus 827 tgd~~~~a~~ia~~~gi~~--~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~ 884 (998)
+|.+.+-...-|+.+|+.. ++-.-+|.+|.+.++. .|.+|...||..+|+.+...
T Consensus 82 aGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~---~GaeVil~g~~~dda~~~a~ 138 (347)
T COG1171 82 AGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRG---YGAEVILHGDNFDDAYAAAE 138 (347)
T ss_pred CCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHh---cCCEEEEECCCHHHHHHHHH
Confidence 4777778888889999974 5567789999666665 57789999998888776543
No 349
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=24.24 E-value=1.7e+02 Score=26.87 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=30.5
Q ss_pred cHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEE
Q 001896 806 KREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM 847 (998)
Q Consensus 806 r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~ 847 (998)
.+++.++++.+|++|.+++.+|++.. -...+.+.|...+.
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~~~~~~ 95 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHGVPVII 95 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcCCcEEE
Confidence 47889999999999999999998764 44466666654433
No 350
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=23.73 E-value=1.6e+02 Score=32.22 Aligned_cols=78 Identities=17% Similarity=0.339 Sum_probs=50.9
Q ss_pred HhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH-HHhCcc-----------------------eEEEecCcccHHHHHHHH
Q 001896 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA-REIGIQ-----------------------DVMADVMPAGKADAVRSF 862 (998)
Q Consensus 807 ~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia-~~~gi~-----------------------~~~~~~~p~~K~~~v~~l 862 (998)
|.=.+.|+++|+.|.++.+++--.-..+...+ ..-|++ ++.+++-|....+.-+..
T Consensus 167 pRH~~lI~eiR~~Gari~Li~DGDVa~ai~~~~~~s~vD~~~GiGGaPEGVlaAaAlkclGG~mqgRL~~~~~~e~~r~~ 246 (319)
T PRK09479 167 PRHEELIAEIREAGARVKLISDGDVAGAIATAFPDTGVDILMGIGGAPEGVLAAAALKCLGGEMQGRLLPRNEEERARAK 246 (319)
T ss_pred chHHHHHHHHHHcCCeEEEeccccHHHHHHHhcCCCCeeEEEEcCcChHHHHHHHHHHhcCceeEEeECCCCHHHHHHHH
Confidence 44458899999999999998844444444444 334554 577788776544333222
Q ss_pred hh---------------cCCEEEEEcCCCCCHHHHhc
Q 001896 863 QK---------------DGSIVAMVGDGINDSPALAA 884 (998)
Q Consensus 863 ~~---------------~g~~v~~vGDg~nD~~al~~ 884 (998)
+. .|+.|.|+.-|+.|...|+-
T Consensus 247 ~~Gi~D~~kv~~~~dLv~gddv~F~ATGVTdG~lL~G 283 (319)
T PRK09479 247 KMGITDLDKVLTLDDLVRGDDVIFAATGVTDGDLLKG 283 (319)
T ss_pred HcCCcChhheeEHHHcccCCCEEEEEeCCCCCCCcCC
Confidence 11 24579999999999888864
No 351
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=23.71 E-value=2.7e+02 Score=32.47 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec--CcccH-HH--HHHHHhhcCCEEEE
Q 001896 808 EAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV--MPAGK-AD--AVRSFQKDGSIVAM 871 (998)
Q Consensus 808 ~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~--~p~~K-~~--~v~~l~~~g~~v~~ 871 (998)
...+.=+.|++.|+++.+.+||+.....++++++++..++... .+..+ .+ +-+.|.+.|-.+..
T Consensus 56 sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~~~~ 124 (461)
T COG0415 56 SLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIAVHS 124 (461)
T ss_pred HHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcceEEeeeeechhHHHHHHHHHHHHHhcCceEEE
Confidence 4555567789999999999999999999999999998887754 33222 22 56667777754443
No 352
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.67 E-value=2.9e+02 Score=30.03 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=30.7
Q ss_pred HHHHHHhh-----cCCEEEEEcC-CCCCHH---HHhcCCeEEEe--cCc--hHHHHHhcCEEEec
Q 001896 857 DAVRSFQK-----DGSIVAMVGD-GINDSP---ALAAADVGMAI--GAG--TDIAIEAADYVLMR 908 (998)
Q Consensus 857 ~~v~~l~~-----~g~~v~~vGD-g~nD~~---al~~A~vgia~--~~~--~~~~~~~ad~vl~~ 908 (998)
.+++.|+. .|+.++++|- |+-=.| +|.+++.-+.+ ... .......||+++.-
T Consensus 144 avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 144 GIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVA 208 (284)
T ss_pred HHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEe
Confidence 45555554 4899999999 444444 45555544444 222 23345679998864
No 353
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.65 E-value=3.2e+02 Score=30.32 Aligned_cols=77 Identities=16% Similarity=0.308 Sum_probs=60.3
Q ss_pred EEEecCCCcHhHHHHHHHHHhC-CCEEEEEcCC--CHHHHHHHHHHhCcc--------eEEEecCcccHHHHHHHHhhcC
Q 001896 798 VMGIADPVKREAAVVVEGLLKM-GVRPVMVTGD--NWRTAHAVAREIGIQ--------DVMADVMPAGKADAVRSFQKDG 866 (998)
Q Consensus 798 ~i~l~d~~r~~~~~~i~~l~~~-gi~~~i~tgd--~~~~a~~ia~~~gi~--------~~~~~~~p~~K~~~v~~l~~~g 866 (998)
+.+++|+-|-+...++..+.++ |+.+.+--.. -...++.+++.+||+ .+...+.|+.-.++++.|++.+
T Consensus 219 vtAMhDaTrGGla~aLnEmA~aSgvgi~I~ee~Ipv~~eVr~vce~lGiDPl~~anEG~lv~~V~~~~a~~~l~~L~~~~ 298 (339)
T COG0309 219 VTAMHDATRGGLAGALNEMAEASGVGISIEEEKIPVREEVRGVCELLGLDPLELANEGKLVIAVPPEHAEEVLEALRSHG 298 (339)
T ss_pred hhhccCCchhHHHHHHHHHHHHcCCeEEEeeccccccHHHHHHHHHhCCCHHHhhcCceEEEEECHHHHHHHHHHHHhcC
Confidence 6679999999999999888555 7766665443 357789999999998 3566677877778999999998
Q ss_pred -CEEEEEcC
Q 001896 867 -SIVAMVGD 874 (998)
Q Consensus 867 -~~v~~vGD 874 (998)
.....+|-
T Consensus 299 ~~~A~iIGe 307 (339)
T COG0309 299 LKDAAIIGE 307 (339)
T ss_pred CccceeEEE
Confidence 56666664
No 354
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=23.59 E-value=5e+02 Score=26.97 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCEEE-EEc------------CCCHHHHHHHHHHhCcceEEEecC---cccHH---HHHHHHhhcCCEE
Q 001896 809 AAVVVEGLLKMGVRPV-MVT------------GDNWRTAHAVAREIGIQDVMADVM---PAGKA---DAVRSFQKDGSIV 869 (998)
Q Consensus 809 ~~~~i~~l~~~gi~~~-i~t------------gd~~~~a~~ia~~~gi~~~~~~~~---p~~K~---~~v~~l~~~g~~v 869 (998)
..-++..++++|+++. ++| +.....++.+|+.+|++.....++ +.... ..++.++++|-..
T Consensus 10 S~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~g~~~ 89 (218)
T TIGR03679 10 SNYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKREGVEG 89 (218)
T ss_pred HHHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHcCCCE
Confidence 3445556666777663 333 345678899999999987666654 22222 3444455557777
Q ss_pred EEEcCCCCCH
Q 001896 870 AMVGDGINDS 879 (998)
Q Consensus 870 ~~vGDg~nD~ 879 (998)
...||-.-|.
T Consensus 90 vv~G~i~sd~ 99 (218)
T TIGR03679 90 IVTGAIASRY 99 (218)
T ss_pred EEECCcccHh
Confidence 7888765443
No 355
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=23.22 E-value=1.5e+02 Score=30.34 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=47.6
Q ss_pred HHHcCCeEEEEEE--------------CCeEEEEEEecCCCcHhHHHHHHHHHhCCCE--E-EEEcCCCHHHHHHHHHHh
Q 001896 779 LEESARTGILVAY--------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVR--P-VMVTGDNWRTAHAVAREI 841 (998)
Q Consensus 779 ~~~~g~~~i~va~--------------~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~--~-~i~tgd~~~~a~~ia~~~ 841 (998)
+...|++++++.. +-.++|+-.....-.+.+++.++.|++.|.+ + +++-|.. . ...+++++
T Consensus 108 l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~-~-~~~~~~~~ 185 (197)
T TIGR02370 108 LRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAP-V-TQDWADKI 185 (197)
T ss_pred HHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChh-c-CHHHHHHh
Confidence 4555666666544 3367888888888899999999999999875 4 4555543 3 34688899
Q ss_pred CcceEE
Q 001896 842 GIQDVM 847 (998)
Q Consensus 842 gi~~~~ 847 (998)
|-+.+.
T Consensus 186 gad~~~ 191 (197)
T TIGR02370 186 GADVYG 191 (197)
T ss_pred CCcEEe
Confidence 986544
No 356
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=22.82 E-value=3.7e+02 Score=27.97 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=47.1
Q ss_pred HhHHHHHHHHHhCCCEEEEEcCCCH-----HHHHHHHHHhCcceEEEecCcccHHHHHHHHhhcCCEEEEE
Q 001896 807 REAAVVVEGLLKMGVRPVMVTGDNW-----RTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMV 872 (998)
Q Consensus 807 ~~~~~~i~~l~~~gi~~~i~tgd~~-----~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~v 872 (998)
++..++++++++.|++ .+++||.. .....+++++|+ .+++-+--.+|.++++.+...|-+...+
T Consensus 73 ~~l~~~l~~~~~~g~~-~vv~G~i~sd~~~~~~e~v~~~~gl-~~~~PLw~~~~~el~~~~~~~G~~~~i~ 141 (218)
T TIGR03679 73 EDLKGALKELKREGVE-GIVTGAIASRYQKSRIERICEELGL-KVFAPLWGRDQEEYLRELVERGFRFIIV 141 (218)
T ss_pred HHHHHHHHHHHHcCCC-EEEECCcccHhHHHHHHHHHHhCCC-eEEeehhcCCHHHHHHHHHHCCCEEEEE
Confidence 4467788888877876 56778764 456678888998 5566565678999999999988765443
No 357
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=22.65 E-value=8.4e+02 Score=28.98 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=68.2
Q ss_pred hHHHHHHHHHcCCeEEE-EEECCeEEEEEEecCCCcHhHHHHHHHHH--hCCCEEEEEcCCCH---HHHHHHHHHhCcce
Q 001896 772 VESFVVELEESARTGIL-VAYDDNLIGVMGIADPVKREAAVVVEGLL--KMGVRPVMVTGDNW---RTAHAVAREIGIQD 845 (998)
Q Consensus 772 ~~~~~~~~~~~g~~~i~-va~~~~~lG~i~l~d~~r~~~~~~i~~l~--~~gi~~~i~tgd~~---~~a~~ia~~~gi~~ 845 (998)
+.+..+.+.+.+...+. +..+++++|++..+|-++..... ..++ +..+.+...-|... ..+..+. +.|++-
T Consensus 180 l~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p--~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~-~ag~d~ 256 (495)
T PTZ00314 180 LEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYP--NASLDSNGQLLVGAAISTRPEDIERAAALI-EAGVDV 256 (495)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCc--hhhhccCCCEEEEEEECCCHHHHHHHHHHH-HCCCCE
Confidence 44555566666665444 44568999999999988765422 2222 22456666666544 3333333 357776
Q ss_pred EEEecC---cccHHHHHHHHhhc-CCEEEEEcCCC--CCHHHHhcCCe
Q 001896 846 VMADVM---PAGKADAVRSFQKD-GSIVAMVGDGI--NDSPALAAADV 887 (998)
Q Consensus 846 ~~~~~~---p~~K~~~v~~l~~~-g~~v~~vGDg~--nD~~al~~A~v 887 (998)
+.-... ...-.+.++.+++. +....+.|+.. .|+..+..|++
T Consensus 257 i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGa 304 (495)
T PTZ00314 257 LVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGA 304 (495)
T ss_pred EEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCC
Confidence 665542 22335678888876 34566778776 47777777763
No 358
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=22.05 E-value=1.8e+02 Score=31.59 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=49.7
Q ss_pred HhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH-HHhCcc-----------------------eEEEecCcccHHHHHHHH
Q 001896 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA-REIGIQ-----------------------DVMADVMPAGKADAVRSF 862 (998)
Q Consensus 807 ~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia-~~~gi~-----------------------~~~~~~~p~~K~~~v~~l 862 (998)
|.=.+.|+++|+.|.++.+++--.-..+...+ ..-|++ ++.+++-|.+..+.-+..
T Consensus 164 pRH~~lI~eiR~~Gari~Li~DGDV~~ai~~~~~~s~vD~~~GiGGaPEGVlaAaAlkclGG~~qgrL~~~~~~e~~r~~ 243 (309)
T cd01516 164 PRHAALIEEIREAGARIKLIPDGDVAAAIATALPGSGVDVLMGIGGAPEGVLAAAALKCLGGEMQGRLLPRNEEERARAR 243 (309)
T ss_pred chHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEECCCChHHHHHHHHHHhCCceeEEEECCCCHHHHHHHH
Confidence 44458889999999999888843443343333 334554 477788776544332222
Q ss_pred hh---------------cCCEEEEEcCCCCCHHHHhc
Q 001896 863 QK---------------DGSIVAMVGDGINDSPALAA 884 (998)
Q Consensus 863 ~~---------------~g~~v~~vGDg~nD~~al~~ 884 (998)
+. +|+.|.|+.-|+.|...|+.
T Consensus 244 ~~Gi~D~~ki~~~ddLv~gd~v~FaATGvTdG~lL~G 280 (309)
T cd01516 244 EMGITDPNKILTLDDLVRGDDVVFAATGITDGELLKG 280 (309)
T ss_pred HcCCCChhheeEHHHcccCCCEEEEEeCCCCCCccCC
Confidence 11 25679999999999888764
No 359
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=21.70 E-value=1.4e+02 Score=32.26 Aligned_cols=70 Identities=23% Similarity=0.203 Sum_probs=40.9
Q ss_pred cCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhcCCEEEEEcCCC-CCHH
Q 001896 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGI-NDSP 880 (998)
Q Consensus 802 ~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~-nD~~ 880 (998)
++-++|++-..+..+++++=+....-|.+....... +++.+....++++||||+. .|+.
T Consensus 163 ~~g~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~--------------------al~~~~~~~~~~~mVGD~~~TDI~ 222 (269)
T COG0647 163 ERGLRPGAGAIAALLEQATGREPTVIGKPSPAIYEA--------------------ALEKLGLDRSEVLMVGDRLDTDIL 222 (269)
T ss_pred CCCCccCcHHHHHHHHHhhCCcccccCCCCHHHHHH--------------------HHHHhCCCcccEEEEcCCchhhHH
Confidence 444556665555555555322224445444433332 3333434444799999995 4999
Q ss_pred HHhcCCeEEEe
Q 001896 881 ALAAADVGMAI 891 (998)
Q Consensus 881 al~~A~vgia~ 891 (998)
+-++++..-.+
T Consensus 223 ~a~~~G~~t~L 233 (269)
T COG0647 223 GAKAAGLDTLL 233 (269)
T ss_pred HHHHcCCCEEE
Confidence 99999977443
No 360
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=21.60 E-value=2.5e+02 Score=30.31 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=48.4
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHHhCcceEEEec
Q 001896 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV 850 (998)
Q Consensus 785 ~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~~gi~~~~~~~ 850 (998)
.++.+--|.+++.--.-..-..|.+.+.+..||+.|..+++=|-.+.+-+.+-++++++.++|.-+
T Consensus 123 hVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~i 188 (297)
T PF05152_consen 123 HVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDII 188 (297)
T ss_pred cEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEE
Confidence 467777788776432222234488899999999999988887766777778888999998655543
No 361
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=21.54 E-value=3e+02 Score=26.65 Aligned_cols=83 Identities=20% Similarity=0.165 Sum_probs=60.5
Q ss_pred EecCCCcHhHHHHHHHHHhC-C-CEEEEEcCC--------CHHHHHHHHHHhCcceEE-EecCcccHHHHHHHHhhc---
Q 001896 800 GIADPVKREAAVVVEGLLKM-G-VRPVMVTGD--------NWRTAHAVAREIGIQDVM-ADVMPAGKADAVRSFQKD--- 865 (998)
Q Consensus 800 ~l~d~~r~~~~~~i~~l~~~-g-i~~~i~tgd--------~~~~a~~ia~~~gi~~~~-~~~~p~~K~~~v~~l~~~--- 865 (998)
--++.+.|...+.|+.||.. | ..+.++|.. ....|+.+-++.||..+. +-..|.--.++++.+-.+
T Consensus 57 P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~Nshv 136 (190)
T KOG2961|consen 57 PYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFGNSHV 136 (190)
T ss_pred CcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhCCccc
Confidence 34778888899999999876 5 567777642 345688888999997654 344677777888887654
Q ss_pred --CCEEEEEcCC-CCCHHHH
Q 001896 866 --GSIVAMVGDG-INDSPAL 882 (998)
Q Consensus 866 --g~~v~~vGDg-~nD~~al 882 (998)
...++||||- ..|+-+.
T Consensus 137 ~~~se~~~vGDRlfTDI~~a 156 (190)
T KOG2961|consen 137 CTSSELIMVGDRLFTDIVYA 156 (190)
T ss_pred CChhHeEEEccchhhhHhhh
Confidence 3468999998 4577654
No 362
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.49 E-value=5.5e+02 Score=27.40 Aligned_cols=38 Identities=16% Similarity=0.011 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCEEEEEcC-CCHHHHHHHHHHhCcceEEE
Q 001896 811 VVVEGLLKMGVRPVMVTG-DNWRTAHAVAREIGIQDVMA 848 (998)
Q Consensus 811 ~~i~~l~~~gi~~~i~tg-d~~~~a~~ia~~~gi~~~~~ 848 (998)
+.++.+.+.+..-+++++ +........++..|++-++.
T Consensus 47 ~~~~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~ 85 (283)
T cd06279 47 SDSALVVSALVDGFIVYGVPRDDPLVAALLRRGLPVVVV 85 (283)
T ss_pred HHHHHHHhcCCCEEEEeCCCCChHHHHHHHHcCCCEEEE
Confidence 456666777776555544 22223344456667654433
No 363
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=21.30 E-value=1.8e+02 Score=29.10 Aligned_cols=85 Identities=8% Similarity=0.092 Sum_probs=52.9
Q ss_pred ecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHH---hCcc----eEEEecCcccHH------HHHHHHhhcCC
Q 001896 801 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE---IGIQ----DVMADVMPAGKA------DAVRSFQKDGS 867 (998)
Q Consensus 801 l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia~~---~gi~----~~~~~~~p~~K~------~~v~~l~~~g~ 867 (998)
+.-++.||+.+.|++-++.|+++.+-|..+-..-+-+-.. -.+. .+|. .+-..|. +|.+...-..+
T Consensus 100 lkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfD-ttiG~KrE~~SY~kIa~~iGl~p~ 178 (229)
T COG4229 100 LKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFD-TTIGKKRESQSYAKIAGDIGLPPA 178 (229)
T ss_pred cccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceee-ccccccccchhHHHHHHhcCCCch
Confidence 4668899999999999999999999876544322111110 0011 2222 1222222 35555544567
Q ss_pred EEEEEcCCCCCHHHHhcCC
Q 001896 868 IVAMVGDGINDSPALAAAD 886 (998)
Q Consensus 868 ~v~~vGDg~nD~~al~~A~ 886 (998)
.++|..|.++...|.+.++
T Consensus 179 eilFLSDn~~EL~AA~~vG 197 (229)
T COG4229 179 EILFLSDNPEELKAAAGVG 197 (229)
T ss_pred heEEecCCHHHHHHHHhcc
Confidence 8999999998887765554
No 364
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=21.18 E-value=2.6e+02 Score=24.25 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=37.9
Q ss_pred EEEEecC---CCcHhHHHHHHHHHhCCCEEEEE-cCCCHHHHHHHHHHhCcc
Q 001896 797 GVMGIAD---PVKREAAVVVEGLLKMGVRPVMV-TGDNWRTAHAVAREIGIQ 844 (998)
Q Consensus 797 G~i~l~d---~~r~~~~~~i~~l~~~gi~~~i~-tgd~~~~a~~ia~~~gi~ 844 (998)
.++.+.+ ...+-+.+..+.|+++|+++.+- ++++......-|...|++
T Consensus 3 ~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p 54 (94)
T PF03129_consen 3 VIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIP 54 (94)
T ss_dssp EEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTES
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCe
Confidence 4566666 67778889999999999998776 566777778888888875
No 365
>PRK12415 fructose 1,6-bisphosphatase II; Reviewed
Probab=21.10 E-value=1.9e+02 Score=31.67 Aligned_cols=79 Identities=15% Similarity=0.272 Sum_probs=50.3
Q ss_pred HhHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH-HHhCcc-----------------------eEEEecCcccHHHHHHHH
Q 001896 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA-REIGIQ-----------------------DVMADVMPAGKADAVRSF 862 (998)
Q Consensus 807 ~~~~~~i~~l~~~gi~~~i~tgd~~~~a~~ia-~~~gi~-----------------------~~~~~~~p~~K~~~v~~l 862 (998)
|.=.+.|+++|+.|-++.+++--.-..+...+ ..-|++ ++.+++-|.+..+.-+..
T Consensus 165 pRH~~lI~eir~~Gari~Li~DGDV~~ai~~~~~~~~vD~~~GiGGaPEGVlaAaAlkclGG~~q~rL~~~~~~e~~r~~ 244 (322)
T PRK12415 165 ERHQDIIDRVRAKGARVKLFGDGDVGASIATALPGTGIDLFVGIGGAPEGVISAAALKCLGGEMQARLVPMNEEEEARCR 244 (322)
T ss_pred chHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEEcCCChHHHHHHHHHHhCCceeEEEECCCCHHHHHHHH
Confidence 44468899999999999988743333333333 334554 577788776544332222
Q ss_pred hh---------------cCCEEEEEcCCCCCHHHHhcC
Q 001896 863 QK---------------DGSIVAMVGDGINDSPALAAA 885 (998)
Q Consensus 863 ~~---------------~g~~v~~vGDg~nD~~al~~A 885 (998)
+. .|..|.|+.-|+.|-..|+-.
T Consensus 245 ~~Gi~D~~~v~~~ddlv~gd~v~FaATGvTdG~ll~GV 282 (322)
T PRK12415 245 EMGLEDPRQLLMLDDLVSGDDAIFSATGVSAGELLDGV 282 (322)
T ss_pred HcCCcChhheeEHHHccCCCCEEEEEeCCCCCCCcCCE
Confidence 11 256799999999998888743
No 366
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=21.08 E-value=1.7e+02 Score=24.03 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=41.1
Q ss_pred EEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchhc
Q 001896 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (998)
Q Consensus 50 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (998)
+.+.|+.|+.-.-...+++++++.-+ .+.|..+. ......+....+..||+....
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~G~---------~l~V~~d~-~~a~~di~~~~~~~G~~~~~~ 56 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQDGE---------QLEVKASD-PGFARDAQAWCKSTGNTLISL 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCCCC---------EEEEEECC-ccHHHHHHHHHHHcCCEEEEE
Confidence 56789999999999999999875322 33444443 356788999999999998643
No 367
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=21.05 E-value=3.7e+02 Score=29.11 Aligned_cols=101 Identities=11% Similarity=0.190 Sum_probs=61.4
Q ss_pred hhhhcCCCCChhhHHHHHHHHHc----CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcCCCHHHHH
Q 001896 760 LLNESGITIPDHVESFVVELEES----ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH 835 (998)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~----g~~~i~va~~~~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tgd~~~~a~ 835 (998)
++++.+.+ +.+...++..+... ..+-+.+-+++..+ -.++..+.....|..|++.|++++++.|-.+....
T Consensus 8 ~~~~~~~~-~~e~~~~l~~f~~~~~~~~~~f~VIK~GG~~~----~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~ 82 (271)
T cd04236 8 FLHQKGGD-PREARYWLTQFQIAMPNDWPAFAVLEVDHSVF----RSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGT 82 (271)
T ss_pred HHHHhCCC-HHHHHHHHHHhhccCCCCCCCEEEEEEChhhh----cCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhh
Confidence 44444432 44556666666653 35556666666544 23456688899999999999999999998775444
Q ss_pred HHHHHhCcceEEEecCcccHHHHHHHHhhcCC
Q 001896 836 AVAREIGIQDVMADVMPAGKADAVRSFQKDGS 867 (998)
Q Consensus 836 ~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~ 867 (998)
... ......+...+. +.-..++..+++.|-
T Consensus 83 ~l~-~~~~~~~~~v~~-~~n~~Lv~~L~~~G~ 112 (271)
T cd04236 83 NMS-DLELQAARSRLV-KDCKTLVEALQANSA 112 (271)
T ss_pred hhc-CCcchheehhHH-HHHHHHHHHHHhCCC
Confidence 333 222212111122 445678888888753
No 368
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=20.98 E-value=82 Score=32.56 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=43.7
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHhCCCEEEEEcC-CCHHHHHHHHHHhCcceEEEe
Q 001896 794 NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTG-DNWRTAHAVAREIGIQDVMAD 849 (998)
Q Consensus 794 ~~lG~i~l~d~~r~~~~~~i~~l~~~gi~~~i~tg-d~~~~a~~ia~~~gi~~~~~~ 849 (998)
.+++.-++--.--++.++.+++|++.|+|--+++| -.....+..++++|-+-+..+
T Consensus 157 d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~~~~d 213 (227)
T COG5012 157 DLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGADAYAED 213 (227)
T ss_pred cEEechHHHHHHHHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHHhCCCccCcC
Confidence 56777777777778899999999999999666555 455577888999998665543
No 369
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=20.81 E-value=4e+02 Score=29.42 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=47.1
Q ss_pred hhhhhhHHhhhcCCCCceeeeeecCCCeEEEEeCCCCCCHHHHHHHHHh-cCCce--eee-ccCCccceeeeec-Cccch
Q 001896 140 AACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIED-AGFEA--SFV-QSSGQDKILLQVT-GVLCE 214 (998)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~d~~~~~~~~i~~~i~~-~G~~~--~~~-~~~~~~~~~~~v~-gm~c~ 214 (998)
..-...+++.+++.+||.+++. ++.++-.+.+++ .|++. ... +++-+..+.+++. +...+
T Consensus 78 ~~~~~~l~~~L~~~~~V~~v~~---------------vskeeal~~l~~~~g~~~~l~~l~~nPLP~si~V~~~~~~~~~ 142 (309)
T PRK11026 78 DDAANAVVEQLKAEDGVEKVNY---------------LSREEALGEFRNWSGFGGALDMLEENPLPAVAIIIPKLDFQSS 142 (309)
T ss_pred HHHHHHHHHHHhCCCCcceEEE---------------ECHHHHHHHHHHhhCchHHHhhCcCCCCCCeEEEEecCCCCCH
Confidence 3345788999999999988665 244555554543 34321 111 1222344455543 33445
Q ss_pred hhhhHHHhhhhcCCCceeEE
Q 001896 215 LDAHFLEGILSNFKGVRQFR 234 (998)
Q Consensus 215 ~ca~~ie~~l~~~~GV~~~~ 234 (998)
.-...+.+.+.+.+||.+++
T Consensus 143 ~~~~~i~~~l~~~~~V~~v~ 162 (309)
T PRK11026 143 EKLNTLRDRLAQIKGVDEVR 162 (309)
T ss_pred HHHHHHHHHHhcCCCCceee
Confidence 56678888888888886653
No 370
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.75 E-value=4.2e+02 Score=28.89 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=31.8
Q ss_pred HHHHHHhh-----cCCEEEEEcCCCC----CHHHHh------cCCeEEEecCch--HHHHHhcCEEEec
Q 001896 857 DAVRSFQK-----DGSIVAMVGDGIN----DSPALA------AADVGMAIGAGT--DIAIEAADYVLMR 908 (998)
Q Consensus 857 ~~v~~l~~-----~g~~v~~vGDg~n----D~~al~------~A~vgia~~~~~--~~~~~~ad~vl~~ 908 (998)
.+++.|+. .|+.|+.+|.+.. =+.+|. .|.|-++..... ......||+++..
T Consensus 143 av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~A 211 (286)
T PRK14184 143 GVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVA 211 (286)
T ss_pred HHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEe
Confidence 45555544 3889999999843 122343 366666665333 2355789998864
No 371
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.65 E-value=1.8e+02 Score=23.69 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=37.3
Q ss_pred EEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccch
Q 001896 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (998)
Q Consensus 50 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (998)
+.+.|+.|+.-.-...+++ ++..-+ .+.+..+. ..+...+....++.||..+
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~g~---------~l~v~~d~-~~s~~~i~~~~~~~G~~~~ 53 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEAGG---------EIEVLVDN-EVAKENVSRFAESRGYEVS 53 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCCCC---------EEEEEEcC-hhHHHHHHHHHHHcCCEEE
Confidence 4678999999999999999 553222 23333333 3456789999999999984
No 372
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=20.59 E-value=3.5e+02 Score=30.58 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=65.3
Q ss_pred CCcHhHHHHHHHHHhCCCEEEEEcCC-C----HHHHHHHHHHhCcceEEEecCcccHHHHHHHHhhcCCEEEEEcCCCCC
Q 001896 804 PVKREAAVVVEGLLKMGVRPVMVTGD-N----WRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGIND 878 (998)
Q Consensus 804 ~~r~~~~~~i~~l~~~gi~~~i~tgd-~----~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD 878 (998)
...++.+.++..++++|+++++=+|- + ...++.++++.|+.--.+-+.-++-...++.+...|...--...+. +
T Consensus 55 ~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~gDd~~~~v~~~~~~g~~~~~l~~~~-~ 133 (362)
T PF07287_consen 55 DFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVYGDDLKDEVKELLAEGETIRPLDTGP-P 133 (362)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEECccchHhHHHHHhCCCCCccCCCCC-C
Confidence 34567889999999999999887763 2 3346778888999854555666676677777766665443333332 2
Q ss_pred HHHHhcCCeE--EEecC--chHHHHHhcCEEEecC
Q 001896 879 SPALAAADVG--MAIGA--GTDIAIEAADYVLMRN 909 (998)
Q Consensus 879 ~~al~~A~vg--ia~~~--~~~~~~~~ad~vl~~~ 909 (998)
......--++ .-||. -.+..++-||+|+.-.
T Consensus 134 l~~~~~~~~~a~aylGa~pI~~AL~~GADIVI~GR 168 (362)
T PF07287_consen 134 LSEWDDRIVSANAYLGAEPIVEALEAGADIVITGR 168 (362)
T ss_pred cchhccccceEEEecChHHHHHHHHcCCCEEEeCc
Confidence 2221111122 22331 2456778899999753
No 373
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.58 E-value=4.5e+02 Score=23.05 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=39.7
Q ss_pred HhHHHHHHHHHhCC--CEEEEEcCCCHHHHHHHHHHhCcceEEEecCcccHHHHHHHH
Q 001896 807 REAAVVVEGLLKMG--VRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSF 862 (998)
Q Consensus 807 ~~~~~~i~~l~~~g--i~~~i~tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l 862 (998)
.+..+.++++++.+ .+++++|+........-+.+.|...+... |-...++.+.+
T Consensus 56 ~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~k--p~~~~~l~~~i 111 (112)
T PF00072_consen 56 GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSK--PFSPEELRAAI 111 (112)
T ss_dssp SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEES--SSSHHHHHHHH
T ss_pred ccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEEC--CCCHHHHHHhh
Confidence 46668888888865 78999998877777777779999888875 44444444443
No 374
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=20.48 E-value=4.3e+02 Score=21.80 Aligned_cols=65 Identities=9% Similarity=0.167 Sum_probs=39.1
Q ss_pred EEEeCCCCCCHHHHHHHHHhcCCceeeeccCCccceeeeecCccchhhhhHHHhhhhcCCCceeEE
Q 001896 169 EVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFR 234 (998)
Q Consensus 169 ~v~~d~~~~~~~~i~~~i~~~G~~~~~~~~~~~~~~~~~v~gm~c~~ca~~ie~~l~~~~GV~~~~ 234 (998)
.+......--..+|...+.+.|....-......+.+.+.++.. ....-..+-+.|++.+||.+++
T Consensus 4 ~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~ 68 (74)
T cd04877 4 EITCEDRLGITQEVLDLLVEHNIDLRGIEIDPKGRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVK 68 (74)
T ss_pred EEEEEccchHHHHHHHHHHHCCCceEEEEEecCCeEEEEeEec-CHHHHHHHHHHHhCCCCceEEE
Confidence 3443333334678888888888776543322113355555533 3334567778899999998875
No 375
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.26 E-value=1.6e+02 Score=24.19 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=40.8
Q ss_pred EEeCCCCChhHHHHHHHhhcCCCCeeEEEEeecccEEEEEECCCCCChHHHHHHHHhcCccchhc
Q 001896 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (998)
Q Consensus 50 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~l~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (998)
+...|..|+.-.-...+++++++.-+. +.|..+. ..+...+....++.||++...
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~G~~---------l~V~~d~-~~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKPGEI---------LEVISDC-PQSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCCCCE---------EEEEecC-chHHHHHHHHHHHcCCEEEEE
Confidence 457899999999999999998853322 3333343 357788999999999998543
No 376
>PHA02669 hypothetical protein; Provisional
Probab=20.14 E-value=2.4e+02 Score=27.24 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHh
Q 001896 400 TSAMLITFVLFGKYLEILAK-GKTSDAIKKLVE 431 (998)
Q Consensus 400 ~~~~l~~~~~~~~~~e~~~~-~k~~~~l~~l~~ 431 (998)
+++.+.+++-+|-..|...+ .|..+.+++|..
T Consensus 17 TgAaiYlLiEiGLAaERanKrsRvK~nMRkLat 49 (210)
T PHA02669 17 TGAAIYLLIEIGLAAERANKRSRVKANMRKLAT 49 (210)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45556666667777775544 355666777643
Done!