Query 001897
Match_columns 998
No_of_seqs 644 out of 5488
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 11:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.7E-88 1E-92 801.3 46.1 830 20-972 13-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.5E-62 3.3E-67 619.1 55.6 659 155-914 184-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-42 2.7E-47 376.9 15.7 277 160-440 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.4E-28 3E-33 312.5 21.8 407 514-957 141-581 (968)
5 PLN00113 leucine-rich repeat r 100.0 3.7E-28 8.1E-33 308.5 22.1 393 513-942 188-590 (968)
6 KOG4194 Membrane glycoprotein 99.9 8E-25 1.7E-29 232.9 5.4 397 514-965 53-466 (873)
7 KOG4194 Membrane glycoprotein 99.9 1.7E-22 3.7E-27 215.3 7.4 332 497-850 84-426 (873)
8 KOG0444 Cytoskeletal regulator 99.9 2.7E-24 5.9E-29 229.9 -7.2 346 511-940 30-379 (1255)
9 PLN03210 Resistant to P. syrin 99.9 1.2E-20 2.5E-25 239.5 21.1 317 562-941 590-911 (1153)
10 KOG0444 Cytoskeletal regulator 99.8 1.6E-23 3.4E-28 224.1 -5.4 339 493-881 34-376 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 4.4E-23 9.4E-28 210.6 -12.4 175 512-702 67-241 (565)
12 KOG0618 Serine/threonine phosp 99.8 5.3E-22 1.2E-26 223.3 -6.7 403 523-955 8-438 (1081)
13 KOG0472 Leucine-rich repeat pr 99.8 9.2E-22 2E-26 201.0 -9.4 259 514-796 46-309 (565)
14 KOG0618 Serine/threonine phosp 99.7 3.8E-19 8.3E-24 200.5 3.2 385 514-935 46-488 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 6.6E-13 1.4E-17 156.2 19.0 151 495-668 205-355 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 3.3E-13 7.1E-18 158.8 13.9 154 514-703 202-356 (788)
17 KOG0617 Ras suppressor protein 99.4 2E-15 4.3E-20 137.0 -5.1 150 514-667 34-185 (264)
18 KOG0617 Ras suppressor protein 99.4 3.4E-15 7.3E-20 135.5 -3.8 157 531-703 28-187 (264)
19 KOG4237 Extracellular matrix p 99.4 3.7E-14 8.1E-19 145.8 0.3 275 537-824 68-358 (498)
20 PRK15370 E3 ubiquitin-protein 99.4 1.4E-12 3E-17 154.7 13.0 134 517-667 182-316 (754)
21 PRK15370 E3 ubiquitin-protein 99.4 2.1E-12 4.7E-17 153.1 11.5 247 537-851 179-426 (754)
22 KOG4237 Extracellular matrix p 99.3 2.8E-13 6E-18 139.5 2.5 267 495-764 50-355 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.3 4.7E-12 1E-16 152.6 8.3 107 511-618 543-653 (889)
24 TIGR03015 pepcterm_ATPase puta 99.2 4.6E-09 9.9E-14 112.6 25.2 181 173-361 40-242 (269)
25 PRK04841 transcriptional regul 99.2 6.4E-10 1.4E-14 141.2 21.2 275 174-486 30-332 (903)
26 cd00116 LRR_RI Leucine-rich re 99.2 4.1E-12 8.8E-17 140.4 0.2 110 557-667 19-149 (319)
27 cd00116 LRR_RI Leucine-rich re 99.1 7.5E-12 1.6E-16 138.3 0.8 87 580-667 77-177 (319)
28 PF05729 NACHT: NACHT domain 99.1 6.4E-10 1.4E-14 109.7 12.4 145 177-327 1-163 (166)
29 PRK00411 cdc6 cell division co 98.9 1.2E-07 2.5E-12 107.9 23.4 287 157-464 32-356 (394)
30 PF01637 Arch_ATPase: Archaeal 98.9 6.3E-09 1.4E-13 109.1 11.4 194 157-356 1-233 (234)
31 TIGR02928 orc1/cdc6 family rep 98.9 1.4E-06 3E-11 98.0 28.7 290 157-464 17-348 (365)
32 KOG0532 Leucine-rich repeat (L 98.9 1.4E-10 3E-15 125.4 -3.5 169 517-703 79-248 (722)
33 KOG4341 F-box protein containi 98.8 9.8E-11 2.1E-15 122.2 -5.3 149 782-938 292-441 (483)
34 KOG0532 Leucine-rich repeat (L 98.8 2E-10 4.2E-15 124.2 -3.6 191 517-726 54-247 (722)
35 TIGR00635 ruvB Holliday juncti 98.8 1.5E-06 3.2E-11 95.0 24.3 237 155-418 4-253 (305)
36 PRK00080 ruvB Holliday junctio 98.8 1.2E-06 2.7E-11 96.1 23.6 240 153-419 23-275 (328)
37 PF14580 LRR_9: Leucine-rich r 98.8 6.5E-09 1.4E-13 100.4 4.9 106 559-667 17-125 (175)
38 PF14580 LRR_9: Leucine-rich r 98.7 1.7E-08 3.6E-13 97.6 6.6 101 560-662 41-147 (175)
39 PRK06893 DNA replication initi 98.7 2.3E-07 5.1E-12 95.8 13.0 150 175-356 38-202 (229)
40 KOG1259 Nischarin, modulator o 98.6 5.7E-09 1.2E-13 104.0 0.5 133 558-703 281-413 (490)
41 KOG1259 Nischarin, modulator o 98.6 5.5E-09 1.2E-13 104.1 -1.3 126 512-641 283-410 (490)
42 COG2909 MalT ATP-dependent tra 98.6 1.7E-06 3.6E-11 99.6 17.8 284 166-486 26-338 (894)
43 KOG1909 Ran GTPase-activating 98.5 1.4E-08 3E-13 104.2 -0.2 196 604-822 89-308 (382)
44 PF13401 AAA_22: AAA domain; P 98.5 3.6E-07 7.7E-12 85.9 8.2 120 175-296 3-125 (131)
45 KOG3207 Beta-tubulin folding c 98.5 2.1E-08 4.5E-13 105.7 -0.8 132 534-667 119-258 (505)
46 COG4886 Leucine-rich repeat (L 98.5 2E-07 4.3E-12 106.1 7.0 170 514-700 117-288 (394)
47 COG4886 Leucine-rich repeat (L 98.5 1.6E-07 3.4E-12 106.9 5.6 168 496-668 121-290 (394)
48 KOG4341 F-box protein containi 98.4 1.1E-08 2.4E-13 107.2 -4.0 165 753-932 292-461 (483)
49 KOG3207 Beta-tubulin folding c 98.4 3.8E-08 8.2E-13 103.8 -0.5 206 511-722 119-335 (505)
50 PRK13342 recombination factor 98.4 2.9E-06 6.3E-11 96.1 14.6 162 167-359 27-198 (413)
51 TIGR03420 DnaA_homol_Hda DnaA 98.4 4.4E-06 9.5E-11 86.9 14.5 166 161-358 23-202 (226)
52 cd01128 rho_factor Transcripti 98.4 1.3E-06 2.7E-11 90.3 9.1 94 174-271 14-115 (249)
53 PTZ00112 origin recognition co 98.3 2.4E-05 5.2E-10 91.0 18.4 202 159-361 759-986 (1164)
54 PF13173 AAA_14: AAA domain 98.3 1.8E-06 3.9E-11 80.4 7.8 119 176-318 2-126 (128)
55 COG2256 MGS1 ATPase related to 98.3 2.7E-05 5.9E-10 82.4 17.1 207 167-406 39-267 (436)
56 PLN03150 hypothetical protein; 98.3 1.6E-06 3.4E-11 103.3 8.7 104 562-666 419-526 (623)
57 PRK08727 hypothetical protein; 98.3 1.7E-05 3.8E-10 82.1 14.8 150 173-354 38-201 (233)
58 PRK04195 replication factor C 98.2 7E-05 1.5E-09 86.7 20.5 178 157-361 16-206 (482)
59 PRK09376 rho transcription ter 98.2 3.3E-06 7.2E-11 90.6 8.7 93 175-271 168-268 (416)
60 PLN03150 hypothetical protein; 98.2 4E-06 8.6E-11 99.9 9.8 107 537-644 419-529 (623)
61 cd00009 AAA The AAA+ (ATPases 98.2 9.8E-06 2.1E-10 77.8 10.7 120 160-297 3-130 (151)
62 PF13855 LRR_8: Leucine rich r 98.2 1.4E-06 3.1E-11 68.8 3.7 59 607-666 1-60 (61)
63 KOG2120 SCF ubiquitin ligase, 98.2 7.2E-08 1.6E-12 96.4 -4.6 88 730-822 207-296 (419)
64 TIGR02903 spore_lon_C ATP-depe 98.2 0.0002 4.3E-09 84.8 23.1 200 158-360 157-398 (615)
65 COG3899 Predicted ATPase [Gene 98.2 5.9E-05 1.3E-09 92.3 18.6 260 158-431 3-333 (849)
66 PRK07003 DNA polymerase III su 98.2 0.0001 2.2E-09 85.7 19.2 185 155-358 16-222 (830)
67 PRK08084 DNA replication initi 98.1 5.7E-05 1.2E-09 78.4 15.6 162 163-356 32-208 (235)
68 PRK05564 DNA polymerase III su 98.1 7.2E-05 1.6E-09 81.6 16.9 175 159-356 8-189 (313)
69 PRK09087 hypothetical protein; 98.1 2.8E-05 6.1E-10 79.8 12.8 141 175-356 43-194 (226)
70 PF13855 LRR_8: Leucine rich r 98.1 2.1E-06 4.6E-11 67.8 3.3 55 563-617 3-59 (61)
71 KOG2028 ATPase related to the 98.1 0.0003 6.5E-09 73.0 19.2 135 167-327 153-294 (554)
72 COG1474 CDC6 Cdc6-related prot 98.1 0.00023 5.1E-09 78.1 20.0 198 159-359 21-240 (366)
73 PRK12402 replication factor C 98.1 4.5E-05 9.8E-10 84.8 14.8 196 156-356 16-225 (337)
74 PF05621 TniB: Bacterial TniB 98.1 7.3E-05 1.6E-09 77.7 14.8 199 152-354 34-258 (302)
75 PRK14949 DNA polymerase III su 98.1 6.7E-05 1.4E-09 88.9 16.2 184 155-357 16-220 (944)
76 KOG2120 SCF ubiquitin ligase, 98.1 3.8E-07 8.2E-12 91.4 -2.1 184 734-934 186-374 (419)
77 TIGR00767 rho transcription te 98.1 1.7E-05 3.7E-10 85.8 10.0 93 175-271 167-267 (415)
78 PLN03025 replication factor C 98.0 6.2E-05 1.3E-09 82.3 14.3 177 158-354 16-197 (319)
79 PRK14963 DNA polymerase III su 98.0 1.7E-05 3.7E-10 90.9 10.3 179 157-354 16-214 (504)
80 KOG1909 Ran GTPase-activating 98.0 7.5E-07 1.6E-11 91.8 -0.7 144 630-797 157-311 (382)
81 COG3903 Predicted ATPase [Gene 98.0 6.7E-06 1.4E-10 87.6 6.3 236 175-422 13-257 (414)
82 PRK14961 DNA polymerase III su 98.0 0.00016 3.5E-09 80.4 17.5 180 157-355 18-218 (363)
83 KOG0531 Protein phosphatase 1, 98.0 8.3E-07 1.8E-11 101.1 -1.5 106 558-667 92-198 (414)
84 PRK00440 rfc replication facto 98.0 0.00013 2.9E-09 80.3 15.8 176 156-355 18-201 (319)
85 PRK06645 DNA polymerase III su 98.0 0.00022 4.7E-09 81.5 17.2 180 156-354 22-226 (507)
86 PF00308 Bac_DnaA: Bacterial d 97.9 7.4E-05 1.6E-09 76.4 11.7 159 175-354 33-205 (219)
87 PF05496 RuvB_N: Holliday junc 97.9 0.00035 7.7E-09 69.2 15.7 174 154-360 23-224 (233)
88 TIGR00678 holB DNA polymerase 97.9 0.00021 4.6E-09 71.7 14.8 162 166-352 3-186 (188)
89 PRK05642 DNA replication initi 97.9 0.00031 6.6E-09 72.8 16.2 149 176-356 45-207 (234)
90 PRK12323 DNA polymerase III su 97.9 0.00012 2.5E-09 84.0 14.0 183 156-357 17-225 (700)
91 PRK14957 DNA polymerase III su 97.9 0.00025 5.5E-09 81.5 16.9 184 156-358 17-222 (546)
92 PRK14960 DNA polymerase III su 97.9 0.00023 4.9E-09 81.9 16.1 182 156-356 16-218 (702)
93 PRK15386 type III secretion pr 97.9 3E-05 6.6E-10 84.3 8.7 32 899-933 156-187 (426)
94 PRK14956 DNA polymerase III su 97.9 0.00013 2.9E-09 81.4 14.0 192 156-354 19-219 (484)
95 PRK14087 dnaA chromosomal repl 97.9 0.00014 3E-09 82.7 14.2 166 176-359 141-321 (450)
96 PRK13341 recombination factor 97.9 0.00013 2.8E-09 87.1 14.3 167 156-352 29-212 (725)
97 TIGR01242 26Sp45 26S proteasom 97.9 0.00019 4.2E-09 80.1 14.9 170 156-351 123-328 (364)
98 PRK09112 DNA polymerase III su 97.9 0.00028 6.1E-09 77.2 15.6 194 157-358 25-241 (351)
99 TIGR02397 dnaX_nterm DNA polym 97.9 0.00056 1.2E-08 76.6 18.0 183 156-358 15-219 (355)
100 PRK08903 DnaA regulatory inact 97.8 0.00024 5.2E-09 73.7 12.8 152 174-361 40-203 (227)
101 PRK14964 DNA polymerase III su 97.8 0.00054 1.2E-08 77.7 16.3 180 156-354 14-214 (491)
102 PF13191 AAA_16: AAA ATPase do 97.8 5.1E-05 1.1E-09 76.1 7.2 46 157-202 2-50 (185)
103 PRK14962 DNA polymerase III su 97.8 0.00049 1.1E-08 78.4 15.8 184 158-360 17-222 (472)
104 KOG0531 Protein phosphatase 1, 97.8 3.7E-06 8E-11 95.8 -1.4 128 559-703 70-200 (414)
105 PRK07471 DNA polymerase III su 97.8 7.6E-05 1.7E-09 82.1 8.9 196 156-358 20-239 (365)
106 PRK07940 DNA polymerase III su 97.8 0.00079 1.7E-08 74.8 16.9 174 159-357 9-213 (394)
107 KOG1859 Leucine-rich repeat pr 97.8 6.6E-07 1.4E-11 100.0 -7.2 125 512-641 163-290 (1096)
108 PRK08691 DNA polymerase III su 97.7 0.00031 6.8E-09 81.6 13.8 183 155-356 16-219 (709)
109 PRK07994 DNA polymerase III su 97.7 0.00058 1.3E-08 79.9 16.0 191 156-357 17-220 (647)
110 PTZ00202 tuzin; Provisional 97.7 0.00089 1.9E-08 72.6 16.0 162 154-327 261-434 (550)
111 KOG3665 ZYG-1-like serine/thre 97.7 1.1E-05 2.4E-10 95.7 1.5 130 512-642 121-262 (699)
112 PRK14958 DNA polymerase III su 97.7 0.00053 1.1E-08 79.0 14.8 183 155-356 16-219 (509)
113 PRK14955 DNA polymerase III su 97.7 0.00046 1E-08 77.7 13.6 195 158-356 19-227 (397)
114 PRK06620 hypothetical protein; 97.7 0.00017 3.7E-09 73.3 9.1 133 177-353 45-185 (214)
115 TIGR02639 ClpA ATP-dependent C 97.7 0.00053 1.2E-08 83.6 14.9 158 154-327 181-358 (731)
116 PRK14951 DNA polymerase III su 97.7 0.001 2.2E-08 77.6 16.5 182 156-356 17-224 (618)
117 PF12799 LRR_4: Leucine Rich r 97.6 5.6E-05 1.2E-09 54.5 3.7 35 561-595 1-35 (44)
118 PRK05896 DNA polymerase III su 97.6 0.00053 1.1E-08 79.0 13.3 183 155-358 16-222 (605)
119 TIGR02881 spore_V_K stage V sp 97.6 0.00041 8.8E-09 73.5 11.6 132 175-328 41-192 (261)
120 PF12799 LRR_4: Leucine Rich r 97.6 6.5E-05 1.4E-09 54.2 3.7 38 608-646 2-39 (44)
121 PF14516 AAA_35: AAA-like doma 97.6 0.019 4E-07 63.0 24.3 190 164-364 20-246 (331)
122 PRK00149 dnaA chromosomal repl 97.6 0.0012 2.6E-08 75.9 15.5 181 176-377 148-349 (450)
123 PRK15386 type III secretion pr 97.6 0.00016 3.4E-09 78.9 7.2 70 512-593 51-121 (426)
124 PRK08451 DNA polymerase III su 97.5 0.0023 4.9E-08 73.4 16.9 181 157-357 16-218 (535)
125 PRK14959 DNA polymerase III su 97.5 0.0051 1.1E-07 71.4 19.8 183 159-361 20-225 (624)
126 PRK14954 DNA polymerase III su 97.5 0.0021 4.6E-08 75.3 16.8 193 156-352 17-223 (620)
127 PRK14970 DNA polymerase III su 97.5 0.0024 5.3E-08 71.6 16.8 180 156-354 18-206 (367)
128 PRK14969 DNA polymerase III su 97.5 0.0018 3.8E-08 75.3 16.0 180 156-354 17-217 (527)
129 PRK09111 DNA polymerase III su 97.5 0.0021 4.5E-08 75.3 16.4 197 154-356 23-232 (598)
130 PRK14088 dnaA chromosomal repl 97.5 0.00091 2E-08 76.1 13.1 157 176-353 130-301 (440)
131 PRK14950 DNA polymerase III su 97.5 0.001 2.3E-08 78.7 13.9 190 157-357 18-221 (585)
132 TIGR03689 pup_AAA proteasome A 97.5 0.00094 2E-08 76.0 12.8 143 176-328 216-379 (512)
133 KOG2982 Uncharacterized conser 97.5 3.8E-05 8.3E-10 77.4 1.4 106 841-955 174-287 (418)
134 TIGR02880 cbbX_cfxQ probable R 97.5 0.00053 1.2E-08 73.2 10.2 131 178-328 60-209 (284)
135 TIGR00362 DnaA chromosomal rep 97.5 0.0013 2.7E-08 74.8 13.9 157 176-353 136-306 (405)
136 KOG4579 Leucine-rich repeat (L 97.5 1.1E-05 2.3E-10 71.8 -2.4 107 518-625 32-141 (177)
137 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0023 5E-08 78.7 16.7 180 154-349 186-388 (852)
138 PRK14952 DNA polymerase III su 97.5 0.0039 8.5E-08 72.7 17.5 185 156-360 14-223 (584)
139 PRK06305 DNA polymerase III su 97.4 0.0031 6.8E-08 71.8 16.4 177 156-352 18-217 (451)
140 KOG2227 Pre-initiation complex 97.4 0.0062 1.3E-07 66.2 17.1 189 158-349 153-360 (529)
141 CHL00181 cbbX CbbX; Provisiona 97.4 0.0013 2.7E-08 70.3 12.0 132 177-328 60-210 (287)
142 PRK07764 DNA polymerase III su 97.4 0.0034 7.3E-08 76.3 16.9 178 157-354 17-218 (824)
143 CHL00095 clpC Clp protease ATP 97.4 0.00089 1.9E-08 82.7 12.3 158 156-327 180-354 (821)
144 PRK03992 proteasome-activating 97.4 0.002 4.3E-08 72.3 14.1 150 175-350 164-336 (389)
145 KOG3665 ZYG-1-like serine/thre 97.4 5.3E-05 1.2E-09 89.9 1.6 105 561-666 122-231 (699)
146 PRK14971 DNA polymerase III su 97.4 0.0037 7.9E-08 73.9 16.7 179 156-354 18-219 (614)
147 KOG1859 Leucine-rich repeat pr 97.4 4.1E-06 8.9E-11 93.9 -7.3 126 537-668 165-292 (1096)
148 COG2255 RuvB Holliday junction 97.4 0.014 3E-07 59.4 18.0 68 291-359 156-225 (332)
149 PHA02544 44 clamp loader, smal 97.4 0.0022 4.8E-08 70.4 14.0 144 156-325 22-171 (316)
150 PRK14086 dnaA chromosomal repl 97.4 0.0027 5.8E-08 73.3 14.8 154 177-351 315-482 (617)
151 PRK07133 DNA polymerase III su 97.4 0.0051 1.1E-07 72.6 17.2 178 157-354 20-216 (725)
152 PRK12422 chromosomal replicati 97.4 0.0023 4.9E-08 72.7 13.9 152 176-350 141-306 (445)
153 COG5238 RNA1 Ran GTPase-activa 97.4 0.00011 2.4E-09 73.2 2.9 82 560-641 29-131 (388)
154 COG3267 ExeA Type II secretory 97.3 0.01 2.2E-07 59.6 16.3 180 173-359 48-247 (269)
155 KOG2543 Origin recognition com 97.3 0.0012 2.7E-08 69.5 10.2 160 159-327 10-193 (438)
156 COG0593 DnaA ATPase involved i 97.3 0.0051 1.1E-07 67.5 15.4 133 175-328 112-258 (408)
157 KOG0989 Replication factor C, 97.3 0.0015 3.3E-08 66.9 10.3 188 154-356 35-230 (346)
158 PRK11331 5-methylcytosine-spec 97.3 0.001 2.2E-08 73.6 9.6 104 160-271 180-284 (459)
159 PRK14953 DNA polymerase III su 97.3 0.0096 2.1E-07 68.4 17.7 183 156-357 17-220 (486)
160 PTZ00454 26S protease regulato 97.2 0.0069 1.5E-07 67.6 15.7 151 175-351 178-351 (398)
161 COG1373 Predicted ATPase (AAA+ 97.2 0.0025 5.5E-08 71.4 12.3 133 162-322 24-162 (398)
162 PRK14948 DNA polymerase III su 97.2 0.0079 1.7E-07 71.1 16.8 192 157-357 18-222 (620)
163 PRK06647 DNA polymerase III su 97.2 0.0098 2.1E-07 69.5 17.3 181 156-356 17-219 (563)
164 PRK08118 topology modulation p 97.2 0.00022 4.9E-09 69.4 3.2 36 177-214 2-37 (167)
165 PRK11034 clpA ATP-dependent Cl 97.2 0.0018 3.8E-08 78.0 11.2 158 156-327 187-362 (758)
166 KOG2982 Uncharacterized conser 97.2 0.00017 3.7E-09 72.8 2.2 69 753-828 197-265 (418)
167 PTZ00361 26 proteosome regulat 97.2 0.0051 1.1E-07 69.1 14.0 151 175-351 216-389 (438)
168 PF00004 AAA: ATPase family as 97.2 0.0007 1.5E-08 63.4 6.2 22 179-200 1-22 (132)
169 smart00382 AAA ATPases associa 97.2 0.0009 1.9E-08 63.5 7.0 90 177-273 3-92 (148)
170 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0065 1.4E-07 75.4 15.1 160 154-327 172-349 (852)
171 PHA00729 NTP-binding motif con 97.1 0.0024 5.3E-08 64.2 9.3 35 166-200 7-41 (226)
172 TIGR00602 rad24 checkpoint pro 97.1 0.0026 5.7E-08 74.5 10.7 44 157-200 86-134 (637)
173 COG1222 RPT1 ATP-dependent 26S 97.1 0.021 4.5E-07 60.2 15.6 187 149-361 145-371 (406)
174 PRK05707 DNA polymerase III su 97.0 0.02 4.4E-07 62.2 16.5 157 176-357 22-203 (328)
175 CHL00176 ftsH cell division pr 97.0 0.0075 1.6E-07 71.4 14.1 170 154-349 185-386 (638)
176 PRK10865 protein disaggregatio 97.0 0.0081 1.8E-07 74.2 14.4 159 154-327 177-354 (857)
177 KOG0741 AAA+-type ATPase [Post 97.0 0.018 3.9E-07 63.3 14.7 148 175-347 537-704 (744)
178 PRK05563 DNA polymerase III su 96.9 0.018 3.8E-07 67.7 15.9 189 155-354 16-217 (559)
179 KOG1644 U2-associated snRNP A' 96.9 0.0013 2.8E-08 63.2 5.1 83 557-639 60-149 (233)
180 TIGR01241 FtsH_fam ATP-depende 96.9 0.032 7E-07 65.1 18.0 150 176-351 88-260 (495)
181 KOG4579 Leucine-rich repeat (L 96.9 9.5E-05 2.1E-09 66.0 -2.3 79 561-640 53-133 (177)
182 PRK08181 transposase; Validate 96.9 0.042 9.2E-07 57.7 16.7 74 176-271 106-179 (269)
183 KOG1644 U2-associated snRNP A' 96.9 0.0016 3.6E-08 62.5 5.4 103 561-665 42-150 (233)
184 PF04665 Pox_A32: Poxvirus A32 96.9 0.0037 8.1E-08 63.6 8.3 36 177-217 14-49 (241)
185 PRK07399 DNA polymerase III su 96.8 0.023 5E-07 61.4 14.6 192 159-356 8-220 (314)
186 TIGR00763 lon ATP-dependent pr 96.8 0.03 6.4E-07 69.0 17.3 27 175-201 346-372 (775)
187 PRK12608 transcription termina 96.8 0.0088 1.9E-07 64.8 10.8 104 164-271 120-232 (380)
188 PRK14965 DNA polymerase III su 96.7 0.019 4.1E-07 67.7 14.3 182 156-357 17-221 (576)
189 PRK08769 DNA polymerase III su 96.7 0.029 6.2E-07 60.5 14.2 173 163-357 12-208 (319)
190 PF13177 DNA_pol3_delta2: DNA 96.7 0.015 3.2E-07 56.4 10.9 136 161-315 3-162 (162)
191 CHL00195 ycf46 Ycf46; Provisio 96.7 0.057 1.2E-06 61.8 17.2 153 175-351 258-429 (489)
192 PRK00771 signal recognition pa 96.6 0.098 2.1E-06 59.0 18.1 86 175-268 94-184 (437)
193 PF13207 AAA_17: AAA domain; P 96.6 0.0021 4.6E-08 59.1 3.8 23 178-200 1-23 (121)
194 TIGR02237 recomb_radB DNA repa 96.5 0.014 3.1E-07 59.6 10.1 48 175-228 11-58 (209)
195 TIGR01425 SRP54_euk signal rec 96.5 0.11 2.4E-06 58.0 17.6 27 175-201 99-125 (429)
196 KOG2739 Leucine-rich acidic nu 96.5 0.00096 2.1E-08 67.0 1.3 82 559-641 41-127 (260)
197 PF10443 RNA12: RNA12 protein; 96.5 0.19 4.2E-06 55.2 18.7 194 161-367 2-288 (431)
198 PRK06871 DNA polymerase III su 96.5 0.017 3.6E-07 62.3 10.7 175 164-354 11-200 (325)
199 PRK06090 DNA polymerase III su 96.5 0.11 2.4E-06 55.9 16.8 167 163-357 11-201 (319)
200 PF00448 SRP54: SRP54-type pro 96.4 0.018 3.8E-07 57.7 9.8 88 176-268 1-92 (196)
201 PRK07261 topology modulation p 96.4 0.0058 1.3E-07 59.9 6.3 35 178-214 2-36 (171)
202 TIGR02640 gas_vesic_GvpN gas v 96.4 0.072 1.6E-06 56.4 14.9 57 161-227 8-64 (262)
203 PRK12727 flagellar biosynthesi 96.4 0.11 2.3E-06 59.1 16.3 88 176-269 350-438 (559)
204 COG1223 Predicted ATPase (AAA+ 96.4 0.053 1.2E-06 54.3 12.2 158 167-350 136-318 (368)
205 PRK10867 signal recognition pa 96.4 0.19 4.1E-06 56.6 18.3 27 175-201 99-125 (433)
206 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.025 5.3E-07 59.1 10.8 95 175-270 18-126 (235)
207 KOG2004 Mitochondrial ATP-depe 96.3 0.087 1.9E-06 60.5 15.2 97 157-271 413-517 (906)
208 KOG2123 Uncharacterized conser 96.3 0.00027 5.9E-09 70.8 -3.8 98 537-661 20-123 (388)
209 PRK08116 hypothetical protein; 96.3 0.015 3.4E-07 61.4 8.9 101 177-296 115-220 (268)
210 PRK08058 DNA polymerase III su 96.3 0.13 2.7E-06 56.5 16.1 147 161-326 12-181 (329)
211 KOG1947 Leucine rich repeat pr 96.3 0.00084 1.8E-08 78.9 -1.0 193 732-936 187-389 (482)
212 COG0541 Ffh Signal recognition 96.2 0.43 9.3E-06 52.3 19.3 58 175-238 99-158 (451)
213 COG5238 RNA1 Ran GTPase-activa 96.2 0.0028 6E-08 63.5 2.7 89 579-667 25-132 (388)
214 KOG2035 Replication factor C, 96.2 0.13 2.8E-06 52.3 14.2 207 160-380 18-261 (351)
215 PRK10536 hypothetical protein; 96.2 0.045 9.7E-07 56.2 11.3 39 159-199 59-97 (262)
216 TIGR02238 recomb_DMC1 meiotic 96.2 0.026 5.7E-07 60.8 10.2 62 175-237 95-157 (313)
217 KOG0731 AAA+-type ATPase conta 96.2 0.065 1.4E-06 63.1 13.8 177 153-354 312-521 (774)
218 PRK10865 protein disaggregatio 96.2 0.62 1.3E-05 58.0 23.2 24 177-200 599-622 (857)
219 cd01133 F1-ATPase_beta F1 ATP 96.2 0.04 8.6E-07 57.5 10.9 93 175-271 68-175 (274)
220 KOG1947 Leucine rich repeat pr 96.2 0.00081 1.8E-08 79.0 -1.8 211 712-939 187-417 (482)
221 PRK10787 DNA-binding ATP-depen 96.2 0.11 2.4E-06 63.4 16.3 42 159-200 326-373 (784)
222 PRK06526 transposase; Provisio 96.2 0.005 1.1E-07 64.3 4.3 27 175-201 97-123 (254)
223 cd01393 recA_like RecA is a b 96.2 0.03 6.5E-07 58.0 10.1 53 175-227 18-71 (226)
224 TIGR02012 tigrfam_recA protein 96.1 0.021 4.6E-07 61.2 8.8 87 175-271 54-145 (321)
225 PF07693 KAP_NTPase: KAP famil 96.1 0.15 3.3E-06 56.1 16.0 30 174-203 18-47 (325)
226 PF05673 DUF815: Protein of un 96.1 0.03 6.6E-07 56.7 9.0 46 157-202 29-78 (249)
227 PRK05541 adenylylsulfate kinas 96.0 0.027 5.9E-07 55.7 8.7 27 175-201 6-32 (176)
228 PRK07993 DNA polymerase III su 96.0 0.2 4.3E-06 54.7 16.0 168 163-355 10-202 (334)
229 PRK12377 putative replication 96.0 0.011 2.4E-07 61.2 5.9 75 175-270 100-174 (248)
230 PF08423 Rad51: Rad51; InterP 96.0 0.078 1.7E-06 55.7 12.2 94 176-270 38-144 (256)
231 PRK06964 DNA polymerase III su 96.0 0.31 6.7E-06 53.1 17.1 90 259-357 132-225 (342)
232 cd00983 recA RecA is a bacter 96.0 0.025 5.4E-07 60.7 8.6 87 175-271 54-145 (325)
233 COG0466 Lon ATP-dependent Lon 96.0 0.059 1.3E-06 62.1 11.7 151 159-327 327-508 (782)
234 KOG2739 Leucine-rich acidic nu 95.9 0.0039 8.5E-08 62.8 2.0 84 557-640 61-153 (260)
235 PRK09361 radB DNA repair and r 95.9 0.045 9.7E-07 56.6 10.0 47 175-227 22-68 (225)
236 PRK09354 recA recombinase A; P 95.9 0.031 6.7E-07 60.5 8.9 87 175-271 59-150 (349)
237 PRK06696 uridine kinase; Valid 95.9 0.013 2.8E-07 60.4 5.8 40 162-201 5-47 (223)
238 TIGR02858 spore_III_AA stage I 95.9 0.013 2.9E-07 61.5 5.8 119 173-301 108-233 (270)
239 COG0542 clpA ATP-binding subun 95.9 0.15 3.2E-06 60.7 14.9 86 175-271 520-605 (786)
240 PRK11889 flhF flagellar biosyn 95.8 0.044 9.5E-07 59.7 9.6 88 175-269 240-330 (436)
241 COG0563 Adk Adenylate kinase a 95.8 0.021 4.5E-07 56.0 6.6 23 178-200 2-24 (178)
242 cd01120 RecA-like_NTPases RecA 95.8 0.044 9.6E-07 53.2 9.1 40 178-222 1-40 (165)
243 TIGR01243 CDC48 AAA family ATP 95.8 0.1 2.3E-06 64.1 14.2 151 176-352 212-382 (733)
244 KOG2228 Origin recognition com 95.8 0.072 1.6E-06 55.7 10.5 149 174-327 47-219 (408)
245 KOG0734 AAA+-type ATPase conta 95.8 0.026 5.6E-07 62.2 7.6 46 154-199 306-360 (752)
246 TIGR02639 ClpA ATP-dependent C 95.8 0.079 1.7E-06 64.9 12.9 81 177-271 485-565 (731)
247 PLN03186 DNA repair protein RA 95.7 0.057 1.2E-06 58.8 10.3 62 175-237 122-184 (342)
248 COG1618 Predicted nucleotide k 95.7 0.0091 2E-07 55.4 3.4 27 176-202 5-31 (179)
249 PLN03187 meiotic recombination 95.7 0.075 1.6E-06 57.8 10.9 62 175-237 125-187 (344)
250 PRK09183 transposase/IS protei 95.7 0.023 5.1E-07 59.7 6.8 25 176-200 102-126 (259)
251 KOG0743 AAA+-type ATPase [Post 95.7 1.1 2.5E-05 49.3 19.5 168 161-364 211-417 (457)
252 KOG1969 DNA replication checkp 95.7 0.025 5.3E-07 65.0 7.1 74 175-271 325-399 (877)
253 PRK06921 hypothetical protein; 95.6 0.057 1.2E-06 57.0 9.3 39 175-217 116-154 (266)
254 KOG0736 Peroxisome assembly fa 95.6 0.5 1.1E-05 55.1 17.0 98 150-271 667-776 (953)
255 PRK14722 flhF flagellar biosyn 95.6 0.054 1.2E-06 59.5 9.2 88 176-269 137-225 (374)
256 PRK04296 thymidine kinase; Pro 95.5 0.012 2.6E-07 58.8 3.9 111 177-298 3-117 (190)
257 KOG0991 Replication factor C, 95.5 0.025 5.5E-07 55.5 5.8 46 156-201 28-73 (333)
258 PRK07952 DNA replication prote 95.5 0.083 1.8E-06 54.6 10.1 76 176-271 99-174 (244)
259 TIGR03499 FlhF flagellar biosy 95.5 0.062 1.4E-06 57.4 9.5 88 175-268 193-281 (282)
260 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.089 1.9E-06 54.8 10.4 48 175-229 20-67 (237)
261 PRK06547 hypothetical protein; 95.5 0.02 4.3E-07 56.0 5.1 33 168-200 7-39 (172)
262 TIGR02239 recomb_RAD51 DNA rep 95.5 0.08 1.7E-06 57.3 10.2 61 175-236 95-156 (316)
263 TIGR02236 recomb_radA DNA repa 95.5 0.11 2.4E-06 56.7 11.5 61 175-236 94-155 (310)
264 PTZ00035 Rad51 protein; Provis 95.5 0.1 2.3E-06 57.0 11.2 61 175-236 117-178 (337)
265 COG1484 DnaC DNA replication p 95.5 0.077 1.7E-06 55.5 9.7 83 166-271 97-179 (254)
266 PF01695 IstB_IS21: IstB-like 95.5 0.051 1.1E-06 53.5 7.9 75 175-271 46-120 (178)
267 PRK12723 flagellar biosynthesi 95.4 0.06 1.3E-06 59.6 9.0 90 175-269 173-264 (388)
268 TIGR01243 CDC48 AAA family ATP 95.4 0.2 4.4E-06 61.5 14.7 150 176-351 487-657 (733)
269 cd03247 ABCC_cytochrome_bd The 95.4 0.048 1E-06 54.0 7.6 26 175-200 27-52 (178)
270 KOG0733 Nuclear AAA ATPase (VC 95.4 0.4 8.7E-06 54.3 15.0 92 156-271 191-294 (802)
271 TIGR00959 ffh signal recogniti 95.4 0.73 1.6E-05 52.0 17.5 26 175-200 98-123 (428)
272 COG1875 NYN ribonuclease and A 95.4 0.019 4.1E-07 60.6 4.6 38 160-197 229-266 (436)
273 cd03222 ABC_RNaseL_inhibitor T 95.4 0.056 1.2E-06 53.1 7.7 26 175-200 24-49 (177)
274 PF00485 PRK: Phosphoribulokin 95.4 0.015 3.2E-07 58.5 3.9 25 178-202 1-25 (194)
275 PF13238 AAA_18: AAA domain; P 95.3 0.015 3.3E-07 54.0 3.6 22 179-200 1-22 (129)
276 PRK04132 replication factor C 95.3 0.31 6.7E-06 59.3 15.3 153 184-356 574-730 (846)
277 cd01394 radB RadB. The archaea 95.3 0.094 2E-06 53.9 9.8 43 175-222 18-60 (218)
278 PRK04301 radA DNA repair and r 95.3 0.13 2.9E-06 56.1 11.4 61 175-236 101-162 (317)
279 cd03115 SRP The signal recogni 95.3 0.071 1.5E-06 52.5 8.5 24 178-201 2-25 (173)
280 PF13306 LRR_5: Leucine rich r 95.3 0.052 1.1E-06 50.4 7.2 97 535-638 11-111 (129)
281 PRK12726 flagellar biosynthesi 95.3 0.095 2.1E-06 56.9 9.8 89 175-269 205-295 (407)
282 cd03228 ABCC_MRP_Like The MRP 95.3 0.062 1.4E-06 52.8 7.9 26 175-200 27-52 (171)
283 PRK10733 hflB ATP-dependent me 95.3 0.17 3.7E-06 60.8 13.0 147 177-349 186-355 (644)
284 COG1102 Cmk Cytidylate kinase 95.2 0.062 1.3E-06 50.1 7.0 45 178-238 2-46 (179)
285 KOG0727 26S proteasome regulat 95.2 0.48 1E-05 47.3 13.4 26 174-199 187-212 (408)
286 smart00763 AAA_PrkA PrkA AAA d 95.2 0.029 6.3E-07 60.6 5.6 58 157-214 53-118 (361)
287 KOG0730 AAA+-type ATPase [Post 95.2 0.57 1.2E-05 53.8 15.7 132 174-329 466-617 (693)
288 KOG2123 Uncharacterized conser 95.2 0.0019 4E-08 65.0 -3.2 84 512-599 18-103 (388)
289 COG0470 HolB ATPase involved i 95.1 0.1 2.2E-06 57.5 10.1 135 162-313 8-167 (325)
290 PF07728 AAA_5: AAA domain (dy 95.1 0.045 9.7E-07 51.7 6.2 43 179-229 2-44 (139)
291 cd02019 NK Nucleoside/nucleoti 95.1 0.019 4.1E-07 46.4 3.0 23 178-200 1-23 (69)
292 KOG1514 Origin recognition com 95.1 0.62 1.4E-05 53.9 15.7 180 175-359 421-623 (767)
293 cd03223 ABCD_peroxisomal_ALDP 95.1 0.068 1.5E-06 52.1 7.5 127 175-311 26-160 (166)
294 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.054 1.2E-06 51.4 6.6 26 175-200 25-50 (144)
295 cd03238 ABC_UvrA The excision 95.1 0.072 1.6E-06 52.2 7.5 123 175-311 20-161 (176)
296 PTZ00088 adenylate kinase 1; P 95.1 0.031 6.8E-07 57.3 5.2 23 178-200 8-30 (229)
297 PRK08233 hypothetical protein; 95.0 0.019 4.1E-07 57.2 3.5 25 176-200 3-27 (182)
298 COG1121 ZnuC ABC-type Mn/Zn tr 95.0 0.064 1.4E-06 55.0 7.2 25 177-201 31-55 (254)
299 TIGR03878 thermo_KaiC_2 KaiC d 95.0 0.16 3.5E-06 53.5 10.6 40 175-219 35-74 (259)
300 PF13481 AAA_25: AAA domain; P 95.0 0.058 1.2E-06 54.3 7.0 53 177-231 33-90 (193)
301 COG0194 Gmk Guanylate kinase [ 95.0 0.061 1.3E-06 51.7 6.5 24 176-199 4-27 (191)
302 PRK05480 uridine/cytidine kina 95.0 0.023 5E-07 58.0 4.0 27 174-200 4-30 (209)
303 TIGR00064 ftsY signal recognit 95.0 0.15 3.2E-06 54.0 10.1 58 174-237 70-129 (272)
304 PRK06835 DNA replication prote 94.9 0.15 3.3E-06 55.3 10.4 36 177-217 184-219 (329)
305 KOG0744 AAA+-type ATPase [Post 94.9 0.15 3.2E-06 53.0 9.4 28 176-203 177-204 (423)
306 PF01583 APS_kinase: Adenylyls 94.9 0.067 1.4E-06 50.7 6.5 27 176-202 2-28 (156)
307 PRK08939 primosomal protein Dn 94.9 0.061 1.3E-06 57.9 7.1 99 175-295 155-259 (306)
308 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.18 3.9E-06 48.1 9.4 116 177-297 3-138 (159)
309 PTZ00301 uridine kinase; Provi 94.9 0.025 5.5E-07 57.1 3.9 26 176-201 3-28 (210)
310 PRK14974 cell division protein 94.8 0.13 2.8E-06 55.8 9.4 90 175-270 139-233 (336)
311 cd02027 APSK Adenosine 5'-phos 94.8 0.21 4.5E-06 47.7 9.9 24 178-201 1-24 (149)
312 cd02025 PanK Pantothenate kina 94.8 0.12 2.6E-06 52.9 8.8 24 178-201 1-24 (220)
313 PRK05703 flhF flagellar biosyn 94.8 0.1 2.2E-06 59.0 8.9 86 176-268 221-308 (424)
314 PF13671 AAA_33: AAA domain; P 94.8 0.027 5.8E-07 53.5 3.7 22 178-199 1-22 (143)
315 KOG0735 AAA+-type ATPase [Post 94.8 0.078 1.7E-06 60.7 7.7 74 176-271 431-506 (952)
316 PRK06067 flagellar accessory p 94.8 0.17 3.6E-06 52.7 9.9 53 175-235 24-76 (234)
317 COG0572 Udk Uridine kinase [Nu 94.8 0.028 6E-07 56.0 3.8 28 174-201 6-33 (218)
318 PF00154 RecA: recA bacterial 94.8 0.12 2.7E-06 55.3 8.8 87 175-271 52-143 (322)
319 PRK08699 DNA polymerase III su 94.7 0.23 5E-06 54.0 11.1 26 176-201 21-46 (325)
320 PRK07667 uridine kinase; Provi 94.7 0.049 1.1E-06 54.7 5.5 28 174-201 15-42 (193)
321 PLN00020 ribulose bisphosphate 94.7 0.11 2.5E-06 55.8 8.3 27 174-200 146-172 (413)
322 TIGR00235 udk uridine kinase. 94.7 0.03 6.6E-07 57.0 4.0 28 174-201 4-31 (207)
323 PRK08533 flagellar accessory p 94.7 0.25 5.4E-06 51.0 10.7 53 176-236 24-76 (230)
324 KOG0729 26S proteasome regulat 94.7 0.18 3.8E-06 50.7 9.0 26 174-199 209-234 (435)
325 PRK06851 hypothetical protein; 94.7 0.51 1.1E-05 51.7 13.4 44 173-220 211-254 (367)
326 TIGR03345 VI_ClpV1 type VI sec 94.7 0.056 1.2E-06 66.8 6.9 25 176-200 596-620 (852)
327 cd03214 ABC_Iron-Siderophores_ 94.6 0.087 1.9E-06 52.2 7.0 119 175-301 24-162 (180)
328 PRK12678 transcription termina 94.6 0.11 2.4E-06 59.0 8.3 93 175-271 415-515 (672)
329 PF00560 LRR_1: Leucine Rich R 94.6 0.012 2.5E-07 35.2 0.4 21 608-628 1-21 (22)
330 TIGR01360 aden_kin_iso1 adenyl 94.6 0.03 6.4E-07 56.1 3.7 26 175-200 2-27 (188)
331 TIGR03346 chaperone_ClpB ATP-d 94.6 0.066 1.4E-06 66.6 7.4 85 176-271 595-679 (852)
332 PRK06762 hypothetical protein; 94.6 0.031 6.8E-07 54.6 3.7 25 176-200 2-26 (166)
333 PRK15455 PrkA family serine pr 94.6 0.042 9.1E-07 62.5 5.0 48 154-201 75-128 (644)
334 PRK12724 flagellar biosynthesi 94.6 0.14 3.1E-06 56.6 8.9 83 176-267 223-307 (432)
335 PF00910 RNA_helicase: RNA hel 94.6 0.033 7.1E-07 49.7 3.4 24 179-202 1-24 (107)
336 PF00560 LRR_1: Leucine Rich R 94.6 0.012 2.7E-07 35.1 0.4 21 562-582 1-21 (22)
337 COG0468 RecA RecA/RadA recombi 94.6 0.22 4.8E-06 52.2 10.0 50 175-229 59-108 (279)
338 COG0542 clpA ATP-binding subun 94.6 0.28 6.2E-06 58.4 11.9 159 154-327 169-346 (786)
339 COG1136 SalX ABC-type antimicr 94.5 0.081 1.8E-06 53.3 6.4 24 175-198 30-53 (226)
340 PRK03839 putative kinase; Prov 94.5 0.031 6.8E-07 55.5 3.5 23 178-200 2-24 (180)
341 cd03281 ABC_MSH5_euk MutS5 hom 94.5 0.045 9.8E-07 55.7 4.7 23 176-198 29-51 (213)
342 PRK04328 hypothetical protein; 94.5 0.18 3.9E-06 52.9 9.2 54 175-236 22-75 (249)
343 PRK11034 clpA ATP-dependent Cl 94.5 0.075 1.6E-06 64.3 7.1 82 176-271 488-569 (758)
344 cd03246 ABCC_Protease_Secretio 94.4 0.11 2.5E-06 51.0 7.3 26 175-200 27-52 (173)
345 PF03205 MobB: Molybdopterin g 94.4 0.079 1.7E-06 49.7 5.8 39 177-219 1-39 (140)
346 KOG0733 Nuclear AAA ATPase (VC 94.4 0.57 1.2E-05 53.1 13.0 130 175-328 544-693 (802)
347 cd03283 ABC_MutS-like MutS-lik 94.4 0.16 3.5E-06 51.1 8.3 24 177-200 26-49 (199)
348 cd01124 KaiC KaiC is a circadi 94.4 0.2 4.3E-06 50.0 9.0 45 178-229 1-45 (187)
349 cd01125 repA Hexameric Replica 94.4 0.22 4.9E-06 51.9 9.7 24 178-201 3-26 (239)
350 PF08433 KTI12: Chromatin asso 94.4 0.063 1.4E-06 56.5 5.5 26 177-202 2-27 (270)
351 COG1428 Deoxynucleoside kinase 94.4 0.075 1.6E-06 52.2 5.5 26 176-201 4-29 (216)
352 PRK04040 adenylate kinase; Pro 94.3 0.041 8.8E-07 54.7 3.8 24 177-200 3-26 (188)
353 cd01135 V_A-ATPase_B V/A-type 94.3 0.3 6.4E-06 51.0 10.1 96 175-271 68-178 (276)
354 PF00006 ATP-synt_ab: ATP synt 94.3 0.3 6.5E-06 49.4 9.9 88 176-270 15-116 (215)
355 COG0467 RAD55 RecA-superfamily 94.2 0.31 6.6E-06 51.6 10.5 54 174-235 21-74 (260)
356 CHL00095 clpC Clp protease ATP 94.2 0.089 1.9E-06 65.3 7.3 84 177-271 540-623 (821)
357 COG4088 Predicted nucleotide k 94.2 0.13 2.8E-06 49.9 6.6 26 177-202 2-27 (261)
358 PF06745 KaiC: KaiC; InterPro 94.2 0.097 2.1E-06 54.1 6.6 49 175-230 18-67 (226)
359 PRK00625 shikimate kinase; Pro 94.2 0.038 8.3E-07 54.0 3.3 23 178-200 2-24 (173)
360 PRK12597 F0F1 ATP synthase sub 94.2 0.22 4.7E-06 56.3 9.6 93 175-271 142-249 (461)
361 PF03029 ATP_bind_1: Conserved 94.2 0.025 5.5E-07 58.5 2.1 21 181-201 1-21 (238)
362 PRK09270 nucleoside triphospha 94.2 0.077 1.7E-06 54.9 5.7 29 174-202 31-59 (229)
363 cd01121 Sms Sms (bacterial rad 94.1 0.18 3.8E-06 55.9 8.6 97 162-271 69-170 (372)
364 PRK14723 flhF flagellar biosyn 94.1 0.34 7.4E-06 58.0 11.3 87 176-269 185-273 (767)
365 COG1419 FlhF Flagellar GTP-bin 94.0 0.49 1.1E-05 51.7 11.4 87 163-253 186-278 (407)
366 TIGR01313 therm_gnt_kin carboh 94.0 0.16 3.4E-06 49.5 7.2 21 179-199 1-21 (163)
367 PRK06002 fliI flagellum-specif 94.0 0.26 5.6E-06 55.3 9.6 91 175-271 164-266 (450)
368 COG4608 AppF ABC-type oligopep 94.0 0.11 2.4E-06 53.3 6.2 123 175-305 38-178 (268)
369 TIGR00665 DnaB replicative DNA 94.0 4.4 9.6E-05 46.6 20.1 53 176-234 195-247 (434)
370 TIGR00554 panK_bact pantothena 93.9 0.077 1.7E-06 56.3 5.1 27 174-200 60-86 (290)
371 PRK06217 hypothetical protein; 93.9 0.11 2.4E-06 51.7 6.0 24 177-200 2-25 (183)
372 PF13306 LRR_5: Leucine rich r 93.9 0.12 2.7E-06 47.8 6.0 106 552-664 3-112 (129)
373 PRK08972 fliI flagellum-specif 93.9 0.27 5.7E-06 54.9 9.3 90 175-271 161-264 (444)
374 TIGR03305 alt_F1F0_F1_bet alte 93.9 0.35 7.5E-06 54.3 10.3 93 175-271 137-244 (449)
375 PF06309 Torsin: Torsin; Inte 93.9 0.41 8.9E-06 43.2 8.7 29 174-202 51-79 (127)
376 PRK08149 ATP synthase SpaL; Va 93.9 0.3 6.4E-06 54.7 9.7 90 175-271 150-253 (428)
377 PF07726 AAA_3: ATPase family 93.9 0.031 6.8E-07 50.4 1.7 22 179-200 2-23 (131)
378 cd02024 NRK1 Nicotinamide ribo 93.9 0.043 9.3E-07 54.2 2.8 23 178-200 1-23 (187)
379 TIGR01359 UMP_CMP_kin_fam UMP- 93.8 0.042 9.1E-07 54.7 2.9 23 178-200 1-23 (183)
380 cd02023 UMPK Uridine monophosp 93.8 0.042 9.1E-07 55.5 2.8 23 178-200 1-23 (198)
381 cd01131 PilT Pilus retraction 93.8 0.059 1.3E-06 54.3 3.8 110 177-300 2-112 (198)
382 COG2607 Predicted ATPase (AAA+ 93.7 0.51 1.1E-05 47.2 9.8 34 170-203 79-112 (287)
383 PRK10751 molybdopterin-guanine 93.7 0.068 1.5E-06 51.8 3.9 27 175-201 5-31 (173)
384 COG1936 Predicted nucleotide k 93.7 0.049 1.1E-06 51.5 2.7 20 178-197 2-21 (180)
385 TIGR01040 V-ATPase_V1_B V-type 93.7 0.33 7.1E-06 54.3 9.5 97 175-271 140-259 (466)
386 TIGR03574 selen_PSTK L-seryl-t 93.6 0.28 6.2E-06 51.5 8.8 24 178-201 1-24 (249)
387 PRK00889 adenylylsulfate kinas 93.6 0.074 1.6E-06 52.5 4.1 27 175-201 3-29 (175)
388 COG2019 AdkA Archaeal adenylat 93.6 0.058 1.3E-06 50.4 2.9 24 176-199 4-27 (189)
389 TIGR02322 phosphon_PhnN phosph 93.5 0.059 1.3E-06 53.5 3.3 24 177-200 2-25 (179)
390 TIGR02655 circ_KaiC circadian 93.5 0.35 7.5E-06 56.2 10.0 87 175-269 262-363 (484)
391 PRK00131 aroK shikimate kinase 93.5 0.068 1.5E-06 52.7 3.7 25 176-200 4-28 (175)
392 COG2884 FtsE Predicted ATPase 93.5 0.28 6E-06 47.3 7.4 28 175-202 27-54 (223)
393 COG3640 CooC CO dehydrogenase 93.5 0.16 3.5E-06 50.6 6.0 51 178-239 2-52 (255)
394 PRK10463 hydrogenase nickel in 93.5 0.12 2.5E-06 54.5 5.3 35 167-201 95-129 (290)
395 KOG0739 AAA+-type ATPase [Post 93.4 0.43 9.3E-06 49.0 9.0 71 176-270 166-236 (439)
396 cd02028 UMPK_like Uridine mono 93.4 0.062 1.3E-06 53.1 3.2 24 178-201 1-24 (179)
397 TIGR01039 atpD ATP synthase, F 93.4 0.46 9.9E-06 53.4 10.2 93 175-271 142-249 (461)
398 cd02020 CMPK Cytidine monophos 93.4 0.059 1.3E-06 51.3 3.0 23 178-200 1-23 (147)
399 cd01122 GP4d_helicase GP4d_hel 93.4 0.43 9.3E-06 51.0 9.9 52 176-233 30-81 (271)
400 TIGR00073 hypB hydrogenase acc 93.4 0.08 1.7E-06 53.8 4.1 31 170-200 16-46 (207)
401 PRK09519 recA DNA recombinatio 93.4 0.32 7E-06 58.3 9.5 87 175-271 59-150 (790)
402 PRK08927 fliI flagellum-specif 93.4 0.43 9.3E-06 53.5 9.9 90 175-271 157-260 (442)
403 cd01136 ATPase_flagellum-secre 93.3 0.49 1.1E-05 51.1 10.0 90 175-271 68-171 (326)
404 PF07724 AAA_2: AAA domain (Cd 93.3 0.12 2.7E-06 50.3 5.1 43 176-222 3-45 (171)
405 TIGR03881 KaiC_arch_4 KaiC dom 93.3 0.69 1.5E-05 47.9 11.0 53 175-235 19-71 (229)
406 COG2812 DnaX DNA polymerase II 93.3 0.27 5.8E-06 56.1 8.3 181 159-350 20-213 (515)
407 COG0488 Uup ATPase components 93.3 0.38 8.2E-06 55.7 9.7 134 176-312 348-510 (530)
408 KOG3354 Gluconate kinase [Carb 93.3 0.39 8.5E-06 44.3 7.6 26 177-202 13-38 (191)
409 PRK13949 shikimate kinase; Pro 93.3 0.067 1.4E-06 52.3 3.1 24 177-200 2-25 (169)
410 PRK09280 F0F1 ATP synthase sub 93.2 0.54 1.2E-05 53.0 10.4 93 175-271 143-250 (463)
411 TIGR01069 mutS2 MutS2 family p 93.2 0.21 4.5E-06 61.0 7.8 179 175-378 321-521 (771)
412 cd00227 CPT Chloramphenicol (C 93.2 0.074 1.6E-06 52.4 3.4 24 177-200 3-26 (175)
413 PRK13947 shikimate kinase; Pro 93.2 0.072 1.6E-06 52.3 3.2 24 178-201 3-26 (171)
414 PRK14530 adenylate kinase; Pro 93.2 0.075 1.6E-06 54.4 3.5 24 177-200 4-27 (215)
415 TIGR03263 guanyl_kin guanylate 93.1 0.067 1.5E-06 53.1 3.0 23 177-199 2-24 (180)
416 KOG0728 26S proteasome regulat 93.1 3 6.5E-05 41.8 14.0 134 170-327 175-331 (404)
417 PRK05922 type III secretion sy 93.1 0.53 1.1E-05 52.8 10.1 90 175-271 156-259 (434)
418 cd03282 ABC_MSH4_euk MutS4 hom 93.1 0.077 1.7E-06 53.5 3.3 120 175-304 28-158 (204)
419 COG0464 SpoVK ATPases of the A 93.1 0.79 1.7E-05 53.7 12.3 131 175-329 275-425 (494)
420 cd02021 GntK Gluconate kinase 93.1 0.068 1.5E-06 51.2 2.8 22 178-199 1-22 (150)
421 cd03369 ABCC_NFT1 Domain 2 of 93.0 0.58 1.2E-05 47.6 9.6 26 175-200 33-58 (207)
422 TIGR00150 HI0065_YjeE ATPase, 93.0 0.16 3.5E-06 46.8 4.9 26 176-201 22-47 (133)
423 PRK14529 adenylate kinase; Pro 92.9 0.36 7.8E-06 49.2 7.8 22 179-200 3-24 (223)
424 PRK06936 type III secretion sy 92.9 0.49 1.1E-05 53.0 9.5 90 175-271 161-264 (439)
425 PRK06793 fliI flagellum-specif 92.9 0.72 1.6E-05 51.7 10.8 121 175-303 155-292 (432)
426 TIGR01041 ATP_syn_B_arch ATP s 92.9 0.5 1.1E-05 53.5 9.6 96 175-271 140-250 (458)
427 TIGR03600 phage_DnaB phage rep 92.9 4.1 8.8E-05 46.6 17.4 64 163-234 183-246 (421)
428 PRK13975 thymidylate kinase; P 92.8 0.095 2.1E-06 52.8 3.6 25 177-201 3-27 (196)
429 cd03250 ABCC_MRP_domain1 Domai 92.8 0.89 1.9E-05 46.1 10.8 27 175-201 30-56 (204)
430 COG1703 ArgK Putative periplas 92.8 0.21 4.5E-06 51.8 5.9 61 166-229 39-101 (323)
431 TIGR00176 mobB molybdopterin-g 92.8 0.09 2E-06 50.4 3.2 24 178-201 1-24 (155)
432 PF13504 LRR_7: Leucine rich r 92.8 0.072 1.6E-06 29.5 1.5 16 608-623 2-17 (17)
433 PLN02924 thymidylate kinase 92.8 0.85 1.8E-05 46.6 10.4 27 176-202 16-42 (220)
434 cd00464 SK Shikimate kinase (S 92.7 0.095 2E-06 50.4 3.3 22 179-200 2-23 (154)
435 PRK06995 flhF flagellar biosyn 92.7 0.38 8.2E-06 54.8 8.4 59 176-238 256-316 (484)
436 PF03266 NTPase_1: NTPase; In 92.7 0.1 2.2E-06 50.7 3.5 24 179-202 2-25 (168)
437 PF03308 ArgK: ArgK protein; 92.7 0.25 5.4E-06 50.5 6.2 62 165-229 16-79 (266)
438 PRK14527 adenylate kinase; Pro 92.6 0.11 2.4E-06 52.0 3.8 26 175-200 5-30 (191)
439 PRK12339 2-phosphoglycerate ki 92.6 0.11 2.4E-06 51.9 3.7 24 176-199 3-26 (197)
440 TIGR03498 FliI_clade3 flagella 92.6 0.44 9.6E-06 53.3 8.7 90 175-271 139-242 (418)
441 PF12775 AAA_7: P-loop contain 92.6 0.094 2E-06 55.5 3.3 59 164-228 22-80 (272)
442 PRK07594 type III secretion sy 92.6 0.47 1E-05 53.2 8.9 91 174-271 153-257 (433)
443 PRK05057 aroK shikimate kinase 92.6 0.11 2.3E-06 51.0 3.5 25 176-200 4-28 (172)
444 cd01134 V_A-ATPase_A V/A-type 92.6 0.42 9E-06 51.4 7.9 49 175-230 156-205 (369)
445 cd00984 DnaB_C DnaB helicase C 92.5 0.87 1.9E-05 47.6 10.6 52 176-233 13-64 (242)
446 PRK00300 gmk guanylate kinase; 92.5 0.095 2.1E-06 53.3 3.2 25 175-199 4-28 (205)
447 PRK14721 flhF flagellar biosyn 92.5 0.68 1.5E-05 51.9 10.0 87 176-268 191-278 (420)
448 PF03193 DUF258: Protein of un 92.5 0.17 3.7E-06 48.3 4.5 34 163-199 25-58 (161)
449 TIGR03575 selen_PSTK_euk L-ser 92.5 0.44 9.6E-06 51.7 8.2 23 179-201 2-24 (340)
450 COG1066 Sms Predicted ATP-depe 92.5 0.43 9.3E-06 51.7 7.9 87 176-271 93-180 (456)
451 PRK05800 cobU adenosylcobinami 92.5 0.28 6.1E-06 47.8 6.2 23 177-199 2-24 (170)
452 PRK10416 signal recognition pa 92.5 0.82 1.8E-05 49.6 10.3 27 175-201 113-139 (318)
453 cd00820 PEPCK_HprK Phosphoenol 92.4 0.11 2.4E-06 45.6 3.0 22 176-197 15-36 (107)
454 PF08477 Miro: Miro-like prote 92.4 0.11 2.4E-06 47.3 3.2 21 179-199 2-22 (119)
455 cd00071 GMPK Guanosine monopho 92.4 0.093 2E-06 49.2 2.7 23 178-200 1-23 (137)
456 PRK03846 adenylylsulfate kinas 92.4 0.14 3E-06 51.7 4.1 27 174-200 22-48 (198)
457 KOG2170 ATPase of the AAA+ sup 92.4 0.79 1.7E-05 47.6 9.3 81 174-271 108-190 (344)
458 PRK10078 ribose 1,5-bisphospho 92.4 0.099 2.1E-06 52.1 3.0 23 177-199 3-25 (186)
459 KOG3864 Uncharacterized conser 92.4 0.031 6.7E-07 54.1 -0.6 64 811-878 124-187 (221)
460 cd01132 F1_ATPase_alpha F1 ATP 92.4 0.9 1.9E-05 47.5 10.0 90 175-271 68-173 (274)
461 TIGR00708 cobA cob(I)alamin ad 92.3 0.88 1.9E-05 44.0 9.2 118 176-297 5-140 (173)
462 PTZ00185 ATPase alpha subunit; 92.3 1 2.2E-05 50.9 10.9 97 175-271 188-301 (574)
463 PF13245 AAA_19: Part of AAA d 92.3 0.31 6.7E-06 40.1 5.3 25 175-199 9-33 (76)
464 PRK11823 DNA repair protein Ra 92.3 0.37 8E-06 55.1 7.8 83 176-270 80-167 (446)
465 COG1763 MobB Molybdopterin-gua 92.3 0.13 2.9E-06 49.0 3.5 27 176-202 2-28 (161)
466 COG0003 ArsA Predicted ATPase 92.2 0.29 6.3E-06 52.7 6.4 49 176-229 2-50 (322)
467 PRK09099 type III secretion sy 92.2 0.61 1.3E-05 52.5 9.2 91 175-271 162-265 (441)
468 PF10236 DAP3: Mitochondrial r 92.2 10 0.00022 41.1 18.4 47 308-354 258-306 (309)
469 TIGR03496 FliI_clade1 flagella 92.2 0.62 1.3E-05 52.2 9.2 90 175-271 136-239 (411)
470 PRK05439 pantothenate kinase; 92.2 0.18 3.9E-06 53.9 4.8 27 174-200 84-110 (311)
471 TIGR00455 apsK adenylylsulfate 92.2 0.98 2.1E-05 44.9 9.9 28 174-201 16-43 (184)
472 CHL00060 atpB ATP synthase CF1 92.2 0.79 1.7E-05 52.0 9.9 93 175-271 160-274 (494)
473 PRK05688 fliI flagellum-specif 92.1 0.68 1.5E-05 52.1 9.4 90 175-271 167-270 (451)
474 PF00625 Guanylate_kin: Guanyl 92.1 0.19 4.1E-06 50.0 4.7 38 176-218 2-39 (183)
475 KOG1532 GTPase XAB1, interacts 92.1 0.13 2.9E-06 51.9 3.4 63 174-239 17-88 (366)
476 PRK13948 shikimate kinase; Pro 92.1 0.14 3.1E-06 50.4 3.6 26 175-200 9-34 (182)
477 COG3854 SpoIIIAA ncharacterize 92.1 0.3 6.5E-06 48.4 5.7 117 167-297 128-253 (308)
478 COG0465 HflB ATP-dependent Zn 92.1 0.81 1.8E-05 53.0 10.1 47 154-200 152-207 (596)
479 cd01672 TMPK Thymidine monopho 92.0 0.39 8.4E-06 48.4 7.0 25 177-201 1-25 (200)
480 PRK06731 flhF flagellar biosyn 92.0 0.97 2.1E-05 47.6 9.9 88 175-269 74-164 (270)
481 COG1124 DppF ABC-type dipeptid 92.0 0.12 2.7E-06 51.8 3.1 25 175-199 32-56 (252)
482 PF02374 ArsA_ATPase: Anion-tr 92.0 0.28 6.1E-06 52.9 6.1 47 177-228 2-48 (305)
483 PRK13946 shikimate kinase; Pro 92.0 0.13 2.7E-06 51.2 3.2 25 176-200 10-34 (184)
484 PLN02200 adenylate kinase fami 92.0 0.15 3.2E-06 52.7 3.8 25 175-199 42-66 (234)
485 PRK14737 gmk guanylate kinase; 91.9 0.14 3.1E-06 50.8 3.4 25 175-199 3-27 (186)
486 COG0703 AroK Shikimate kinase 91.8 0.14 3.1E-06 49.0 3.2 25 177-201 3-27 (172)
487 PRK04196 V-type ATP synthase s 91.8 0.75 1.6E-05 52.3 9.4 96 175-271 142-252 (460)
488 PRK15453 phosphoribulokinase; 91.8 0.17 3.7E-06 52.7 4.0 28 174-201 3-30 (290)
489 PF13521 AAA_28: AAA domain; P 91.8 0.14 3E-06 49.9 3.2 21 179-199 2-22 (163)
490 PF05970 PIF1: PIF1-like helic 91.8 0.33 7.1E-06 54.1 6.5 40 162-201 8-47 (364)
491 TIGR03880 KaiC_arch_3 KaiC dom 91.7 1.1 2.5E-05 46.1 10.1 48 175-229 15-62 (224)
492 KOG3347 Predicted nucleotide k 91.7 0.13 2.9E-06 47.1 2.6 36 176-221 7-42 (176)
493 PRK04182 cytidylate kinase; Pr 91.7 0.15 3.2E-06 50.6 3.3 23 178-200 2-24 (180)
494 PF13504 LRR_7: Leucine rich r 91.7 0.11 2.3E-06 28.8 1.3 16 562-577 2-17 (17)
495 TIGR00416 sms DNA repair prote 91.6 0.55 1.2E-05 53.7 8.2 40 175-219 93-132 (454)
496 PRK14493 putative bifunctional 91.6 0.17 3.6E-06 53.5 3.8 26 177-202 2-27 (274)
497 PRK07721 fliI flagellum-specif 91.6 0.85 1.8E-05 51.6 9.5 92 174-271 156-260 (438)
498 PRK14738 gmk guanylate kinase; 91.6 0.17 3.7E-06 51.3 3.7 26 174-199 11-36 (206)
499 cd03116 MobB Molybdenum is an 91.5 0.19 4.1E-06 48.3 3.7 25 177-201 2-26 (159)
500 CHL00059 atpA ATP synthase CF1 91.5 1.1 2.4E-05 50.7 10.2 90 175-271 140-245 (485)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-88 Score=801.26 Aligned_cols=830 Identities=32% Similarity=0.499 Sum_probs=589.5
Q ss_pred hhhhhhhhcchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001897 20 CGPFCSKINNTVKIQSNLQALEKELEVLIGLRDDMICQLALAEKDGKVPRTQVKAWVRSVDEFIFEVDLMQESVRAKEKK 99 (998)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~Wl~~~~~~~~d~~d~~d~~~~~~~~ 99 (998)
.+.+.+....+.+.++.+..|++++..|+.++.++++ .+.....+..|.+.+++++|+++|+++.+......
T Consensus 13 ~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a--------~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~ 84 (889)
T KOG4658|consen 13 DQLLNRESECLDGKDNYILELKENLKALQSALEDLDA--------KRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIE 84 (889)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh--------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444566777788999999999999999999987 45567788999999999999999999987542110
Q ss_pred ---------------ccc--cCC---CCcchhhhHHHHHHHHHHHHHHhcCCCCCccccc-CCCCCcccccCCCCccccc
Q 001897 100 ---------------HYC--FYS---CCPQYRHGSKVARMLKEVQGLKSAGIFPAGLVIA-NPEAKSVEHIPGPSIEHQT 158 (998)
Q Consensus 100 ---------------~~~--~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 158 (998)
..| ++. ....+..++++.+++++++.+..++.. +.+.. .......+..|...... .
T Consensus 85 ~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~--~~~~~~~~~~~~~e~~~~~~~~~-V 161 (889)
T KOG4658|consen 85 RKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVF--EVVGESLDPREKVETRPIQSESD-V 161 (889)
T ss_pred HHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccce--ecccccccchhhcccCCCCcccc-c
Confidence 011 111 111345668888888888887765522 11111 11111223333333323 7
Q ss_pred chHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCc
Q 001897 159 TASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDV 238 (998)
Q Consensus 159 ~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 238 (998)
|.+..++++.+.|.+++..+|+|+||||+||||||++++|+... +.++|+.++||+||+.++...++++|++.++...
T Consensus 162 G~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~--v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 162 GLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDE--VGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred cHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccch--hcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 78899999999999888899999999999999999999998542 6789999999999999999999999999988633
Q ss_pred ch--hhhHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHHhh-cCCCeEEEccCCC
Q 001897 239 KM--EESMQRLGIRLHERLLRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVCMA-MKTDVEVRVDLLN 315 (998)
Q Consensus 239 ~~--~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-~~~~~~~~l~~L~ 315 (998)
.. .....+.+..+.+.+.+ +||+|||||||+..+|+.++.++|....||||++|||+++||.. |++...++++.|+
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~-krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~ 318 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEG-KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLT 318 (889)
T ss_pred cccchhhHHHHHHHHHHHhcc-CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccC
Confidence 22 22346777888887765 59999999999999999999999999999999999999999998 8888999999999
Q ss_pred hHHHHHHHHHhhCCCC--CCCCchHHHHHHHHHccCChHHHHHHHHHhcCCCCHHHHHHHHHHHhhc-CCCcccchhhhH
Q 001897 316 DDEAWQLFSQNAGVAA--SKDPIKPFAQAIARECKGLPLAIITMGTAMRGKTNVKLWKHALKEWQKS-VPCIKGIENNVY 392 (998)
Q Consensus 316 ~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~~i~ 392 (998)
++|||.||++.++... ..+.++++|++++++|+|+|||+.++|+.|+.+.+..+|+++.+.+... ....+++.+.++
T Consensus 319 ~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~ 398 (889)
T KOG4658|consen 319 PEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL 398 (889)
T ss_pred ccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence 9999999999997653 3345899999999999999999999999999999999999999998877 344667788999
Q ss_pred HHHHhcccccchhhHHHHhhhccCCCCCccCHHHHHHHHHHhCCcccccchhHHHHhHhHHhhhhhhccccccCC---Cc
Q 001897 393 NSLKWSYDALEGNSKYCFLYCSLFPEDFSIEESELVRYWLAEGLIDEQENHEDSFNRGISLIENLKDHCLLEDGA---SE 469 (998)
Q Consensus 393 ~~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~ 469 (998)
++|.+||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+....+.+++.|..|+++|+++++++..+ ..
T Consensus 399 ~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 399 PILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred HhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 999999999999999999999999999999999999999999999997777888999999999999999998765 34
Q ss_pred CeEEEccchhhHHHHHHhhccccc-cEEeecCCCccccchhhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCC
Q 001897 470 GTVKIHDVVRDVAIWIASSLENRC-KSLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFP 548 (998)
Q Consensus 470 ~~~~mHdlv~d~a~~i~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~ 548 (998)
.+|+|||+|||+|.|++++..... ..++.++.+..+.|+...+...|++++.++.+..++... .++++++|.+.+|..
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSD 557 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecch
Confidence 699999999999999998543211 245555556677777777889999999999988776543 477899999998853
Q ss_pred -CCCCChhhhcCCCCccEEEcCCC-CCCCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhh
Q 001897 549 -LGRVPEKFLDGFPALRVLNLSGT-RIHSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGM 626 (998)
Q Consensus 549 -~~~l~~~~~~~l~~Lr~L~l~~~-~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i 626 (998)
+..++..+|..++.||+|||++| .+..+|.+|+.|.|||||+++ ++.++.+|.++
T Consensus 558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~-----------------------~t~I~~LP~~l 614 (889)
T KOG4658|consen 558 WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS-----------------------DTGISHLPSGL 614 (889)
T ss_pred hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc-----------------------CCCccccchHH
Confidence 77788888899999999999975 355666666666655555555 55677788888
Q ss_pred hcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCC
Q 001897 627 ENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGT 706 (998)
Q Consensus 627 ~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 706 (998)
++|++|.+|++..+..+..+ ++++..|++|++|.+..... ..+...+.++.++.+|+.+.+..... ...
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~--------~~~~~~l~el~~Le~L~~ls~~~~s~--~~~ 683 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSAL--------SNDKLLLKELENLEHLENLSITISSV--LLL 683 (889)
T ss_pred HHHHhhheeccccccccccc-cchhhhcccccEEEeecccc--------ccchhhHHhhhcccchhhheeecchh--HhH
Confidence 88888888888777655555 34466688888887765431 11223445566666666666533222 000
Q ss_pred CchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCC
Q 001897 707 EDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASL 786 (998)
Q Consensus 707 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L 786 (998)
..+..+.+|.+ ....+.+..|... .....+..+.+|
T Consensus 684 e~l~~~~~L~~--------------------------------------~~~~l~~~~~~~~------~~~~~~~~l~~L 719 (889)
T KOG4658|consen 684 EDLLGMTRLRS--------------------------------------LLQSLSIEGCSKR------TLISSLGSLGNL 719 (889)
T ss_pred hhhhhhHHHHH--------------------------------------HhHhhhhcccccc------eeecccccccCc
Confidence 11111111111 1111111111111 122345677888
Q ss_pred CEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhC
Q 001897 787 KSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILAL 866 (998)
Q Consensus 787 ~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l 866 (998)
+.|.+.+|...+........ ...+. .|+++..+.+.+|..++.+. +....
T Consensus 720 ~~L~i~~~~~~e~~~~~~~~-------~~~~~-------------------~f~~l~~~~~~~~~~~r~l~----~~~f~ 769 (889)
T KOG4658|consen 720 EELSILDCGISEIVIEWEES-------LIVLL-------------------CFPNLSKVSILNCHMLRDLT----WLLFA 769 (889)
T ss_pred ceEEEEcCCCchhhcccccc-------cchhh-------------------hHHHHHHHHhhccccccccc----hhhcc
Confidence 88888888776443321111 00000 14444444555555554442 22344
Q ss_pred CCCCEEEEeccccchhhhccccccCCCC--CCCCCcccee-ecCCCccccccccCCCCCCCccEEEEecCCCCCCCCCCC
Q 001897 867 PNLQEIKVSFCDNLVELFCYYSELNFTP--ETVVPNLRNL-ELKNLPKLRTICRQKESWQCLEQVKVIKCNLLRELPLTA 943 (998)
Q Consensus 867 ~~L~~L~l~~c~~L~~l~~~~~~~~~~~--~~~~p~L~~L-~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~~lP~~~ 943 (998)
|+|+.|.+.+|..++++........... ...|+++..+ .+.+.+.+.++......++.|+.+.+..||+++++|...
T Consensus 770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcccc
Confidence 5566666665555555432221111110 1234455555 355555555554444445668888888888888888542
Q ss_pred c----ccCCcceEecchhhhcccccc-ccccccc
Q 001897 944 Q----NADTVKEIIGELQWWNLLNCD-QDTKSSL 972 (998)
Q Consensus 944 ~----~l~~L~~l~~~~~w~~~l~w~-~~~~~~~ 972 (998)
. .+.....-..+.+|-+.++|. +.++...
T Consensus 850 ~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 850 TLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 2 221222223455677788888 4444433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-62 Score=619.09 Aligned_cols=659 Identities=22% Similarity=0.293 Sum_probs=439.3
Q ss_pred ccccchHHHHHHHHHhhc--CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEe---CCC---------
Q 001897 155 EHQTTASKTLGKLMKLLD--CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATV---SKE--------- 220 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~---s~~--------- 220 (998)
.+..|+++.++++..++. .+++++|+||||||+||||||+++|+++. ..|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~-----~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS-----RQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh-----hcCCeEEEeeccccccchhhcccccc
Confidence 345566777777776653 56799999999999999999999999865 35777777642 111
Q ss_pred --CC-HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCCh
Q 001897 221 --LN-LRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSL 297 (998)
Q Consensus 221 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 297 (998)
++ ...++++++.++......... . ...+++++. ++|+||||||||+..+|+.+.....+.++||+||||||++
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~--~-~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIY--H-LGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccC--C-HHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 11 223455555544222111110 0 123455555 4699999999999999998877666778999999999999
Q ss_pred HHHhhcCCCeEEEccCCChHHHHHHHHHhhCCCCC-CCCchHHHHHHHHHccCChHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001897 298 EVCMAMKTDVEVRVDLLNDDEAWQLFSQNAGVAAS-KDPIKPFAQAIARECKGLPLAIITMGTAMRGKTNVKLWKHALKE 376 (998)
Q Consensus 298 ~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~ 376 (998)
+++..++..+.|+++.+++++||+||+++|+.... ++.+.+++++|+++|+|+|||++++|++|+++ +..+|+.++++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~ 413 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPR 413 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 99988888899999999999999999999986543 34578899999999999999999999999987 47899999999
Q ss_pred HhhcCCCcccchhhhHHHHHhcccccch-hhHHHHhhhccCCCCCccCHHHHHHHHHHhCCcccccchhHHHHhHhHHhh
Q 001897 377 WQKSVPCIKGIENNVYNSLKWSYDALEG-NSKYCFLYCSLFPEDFSIEESELVRYWLAEGLIDEQENHEDSFNRGISLIE 455 (998)
Q Consensus 377 l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~lk~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~ 455 (998)
++... ..+|.++|++||+.|++ ..|.||+++|+|+.+..+ +.+..|+|.+.+... ..++
T Consensus 414 L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~-----------~~l~ 473 (1153)
T PLN03210 414 LRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN-----------IGLK 473 (1153)
T ss_pred HHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch-----------hChH
Confidence 87532 45799999999999987 599999999999988755 447778887755321 1378
Q ss_pred hhhhccccccCCCcCeEEEccchhhHHHHHHhhccc---cccEEeec---------CC-------------Cccc--cc-
Q 001897 456 NLKDHCLLEDGASEGTVKIHDVVRDVAIWIASSLEN---RCKSLVRS---------GA-------------GLTE--VS- 507 (998)
Q Consensus 456 ~L~~~~l~~~~~~~~~~~mHdlv~d~a~~i~~~~~~---~~~~l~~~---------~~-------------~~~~--~~- 507 (998)
.|++++|++.. .+.++|||++|++|+.++..... +..++... .. .... +.
T Consensus 474 ~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~ 551 (1153)
T PLN03210 474 NLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHE 551 (1153)
T ss_pred HHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecH
Confidence 89999999864 35799999999999999863211 11111110 00 0000 00
Q ss_pred -hhhhcccceEEEeecCCc-------cccCCCCCCCC-cceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh
Q 001897 508 -ETELVNSLKRVSFMNNSI-------TKLPDCKVHCP-ETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL 578 (998)
Q Consensus 508 -~~~~~~~l~~l~l~~~~~-------~~l~~~~~~~~-~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~ 578 (998)
.....++++.+.+.++.. ..+|..+..++ +|+.|.+.++ .+..+|..+ .+.+|+.|+++++.+..+|.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF--RPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC--CccCCcEEECcCcccccccc
Confidence 012245666666654421 14566555543 5888888776 678888765 46889999999999999998
Q ss_pred hhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCC-CCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCc
Q 001897 579 SLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSAT-SIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSL 657 (998)
Q Consensus 579 ~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L 657 (998)
.+..+++|++|+|++|..++.+|.++.+++|++|++++| .+..+|..++++++|+.|++++|..+..+|.+ + ++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCC
Confidence 888999999999998888888888889999999999987 67789999999999999999998888888876 3 78999
Q ss_pred cEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccE
Q 001897 658 EILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERR 737 (998)
Q Consensus 658 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~ 737 (998)
+.|++++|......+ . ...+|+.|+++.+.+.... ..+ .+++|..
T Consensus 707 ~~L~Lsgc~~L~~~p-----------~--~~~nL~~L~L~~n~i~~lP-~~~-~l~~L~~-------------------- 751 (1153)
T PLN03210 707 YRLNLSGCSRLKSFP-----------D--ISTNISWLDLDETAIEEFP-SNL-RLENLDE-------------------- 751 (1153)
T ss_pred CEEeCCCCCCccccc-----------c--ccCCcCeeecCCCcccccc-ccc-ccccccc--------------------
Confidence 999998875421111 1 1345666766554433211 110 1222332
Q ss_pred EEEecccCc-------h--hhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCC
Q 001897 738 VTISGIDLS-------G--EWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHD 808 (998)
Q Consensus 738 L~l~~~~l~-------~--~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 808 (998)
|.+.++... . ......+++|+.|+|++|...... +..++++++|+.|+|++|......+. .
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l-----P~si~~L~~L~~L~Ls~C~~L~~LP~----~- 821 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL-----PSSIQNLHKLEHLEIENCINLETLPT----G- 821 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCcccc-----ChhhhCCCCCCEEECCCCCCcCeeCC----C-
Confidence 222221100 0 001112345666666655443322 22345556666666665543322111 1
Q ss_pred CCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhcccc
Q 001897 809 DLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYS 888 (998)
Q Consensus 809 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~ 888 (998)
..+++|+.|+|++|..+..+|.. ..+|+.|++++. .++.+|. .+..+++|+.|++++|.+++.++...
T Consensus 822 ~~L~sL~~L~Ls~c~~L~~~p~~-------~~nL~~L~Ls~n-~i~~iP~---si~~l~~L~~L~L~~C~~L~~l~~~~- 889 (1153)
T PLN03210 822 INLESLESLDLSGCSRLRTFPDI-------STNISDLNLSRT-GIEEVPW---WIEKFSNLSFLDMNGCNNLQRVSLNI- 889 (1153)
T ss_pred CCccccCEEECCCCCcccccccc-------ccccCEeECCCC-CCccChH---HHhcCCCCCEEECCCCCCcCccCccc-
Confidence 13555666666666555554432 245555555542 3444332 34455666666666666555544221
Q ss_pred ccCCCCCCCCCccceeecCCCccccc
Q 001897 889 ELNFTPETVVPNLRNLELKNLPKLRT 914 (998)
Q Consensus 889 ~~~~~~~~~~p~L~~L~l~~~~~L~~ 914 (998)
..+++|+.|++++|++|..
T Consensus 890 -------~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 890 -------SKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred -------ccccCCCeeecCCCccccc
Confidence 2455566666666655553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-42 Score=376.88 Aligned_cols=277 Identities=35% Similarity=0.607 Sum_probs=224.3
Q ss_pred hHHHHHHHHHhhcC--CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 001897 160 ASKTLGKLMKLLDC--DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLD 237 (998)
Q Consensus 160 ~~~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 237 (998)
|+.++++|.+.|.+ ++.++|+|+||||+||||||++++++.. ...+|+.++|+.++...+..+++++|+.+++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~---~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR---IKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH---HCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc---ccccccccccccccccccccccccccccccccc
Confidence 46788999999987 7899999999999999999999998743 357899999999999999999999999999876
Q ss_pred cc---hhhhHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHHhhcCC-CeEEEccC
Q 001897 238 VK---MEESMQRLGIRLHERLLRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVCMAMKT-DVEVRVDL 313 (998)
Q Consensus 238 ~~---~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l~~ 313 (998)
.. ...+.......+.+.+.++ ++||||||||+...|+.+...++....|++||||||+..++..+.. ...+++++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDK-RCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCT-SEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred ccccccccccccccccchhhhccc-cceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 32 2345566777888877665 9999999999999999988888877889999999999999876654 67899999
Q ss_pred CChHHHHHHHHHhhCCCC--CCCCchHHHHHHHHHccCChHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCcccchhhh
Q 001897 314 LNDDEAWQLFSQNAGVAA--SKDPIKPFAQAIARECKGLPLAIITMGTAMRGKTNVKLWKHALKEWQKSVPCIKGIENNV 391 (998)
Q Consensus 314 L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i 391 (998)
|++++|++||.+.++... ..+..++.+++|+++|+|+|||+.++|++|+.+.+..+|+.+++.+........+....+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997644 345667889999999999999999999999766567889999998876654433346789
Q ss_pred HHHHHhcccccchhhHHHHhhhccCCCCCccCHHHHHHHHHHhCCcccc
Q 001897 392 YNSLKWSYDALEGNSKYCFLYCSLFPEDFSIEESELVRYWLAEGLIDEQ 440 (998)
Q Consensus 392 ~~~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~ 440 (998)
..++.+||+.||+++|+||+|||+||+++.|+++.++++|+++|+|.+.
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.4e-28 Score=312.52 Aligned_cols=407 Identities=20% Similarity=0.228 Sum_probs=197.7
Q ss_pred cceEEEeecCCcc-ccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC-CCChhhhcccCCceEee
Q 001897 514 SLKRVSFMNNSIT-KLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH-SLPLSLLQLHNCRALLL 591 (998)
Q Consensus 514 ~l~~l~l~~~~~~-~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L 591 (998)
++++|++++|.+. .+|..+..+++|++|++++|.....+|.. +.++++|++|++++|.+. .+|..++++++|++|++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 3444444444433 23333333444444444444222233332 234444444444444433 33444444444444444
Q ss_pred cCCCCCCCCc-cccCCCCCCeeeecCCCCc-ccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccc
Q 001897 592 RDCFYLEDLP-ALGGLTKLQDLDLSATSIR-ELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHW 669 (998)
Q Consensus 592 ~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 669 (998)
++|.....+| .++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. +.++++|++|++++|.+..
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeecc
Confidence 4444333333 3444444444444444333 33444444444444444444322233332 3444444444444443321
Q ss_pred cccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCC----CCCCCCccccEEEEecccC
Q 001897 670 RVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTA----NSLPTKHDERRVTISGIDL 745 (998)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~l 745 (998)
.. ...+.++++|+.|+++.+.+....+..+..+++|+.|++..+.+. ..+..+.+|+.|++++|.+
T Consensus 299 ~~----------p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 299 EI----------PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CC----------ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 11 122333444444444444433333333344444444444333221 1122233444444444443
Q ss_pred chhhHHHh--------------------------hhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccc
Q 001897 746 SGEWIGWL--------------------------LTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLR 799 (998)
Q Consensus 746 ~~~~~~~~--------------------------~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 799 (998)
++..+.++ +++|+.|++++|.... ..+..+..+++|+.|++++|.+...
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG-----ELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-----ECChhHhcCCCCCEEECcCCcccCc
Confidence 33222221 3344444444432111 1222334455555555555544322
Q ss_pred cCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEecccc
Q 001897 800 PIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDN 879 (998)
Q Consensus 800 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~ 879 (998)
.. .....+++|+.|++++|...+.+|... ..++|+.|++++|.-...++ ..+..+++|+.|++++|.-
T Consensus 444 ~~----~~~~~l~~L~~L~L~~n~~~~~~p~~~-----~~~~L~~L~ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l 511 (968)
T PLN00113 444 IN----SRKWDMPSLQMLSLARNKFFGGLPDSF-----GSKRLENLDLSRNQFSGAVP---RKLGSLSELMQLKLSENKL 511 (968)
T ss_pred cC----hhhccCCCCcEEECcCceeeeecCccc-----ccccceEEECcCCccCCccC---hhhhhhhccCEEECcCCcc
Confidence 11 222345666666666665554444332 23566677776654222222 2355677777777777643
Q ss_pred chhhhccccccCCCCCCCCCccceeecCCCccccccccCCCCCCCccEEEEecCCCCCCCCCCCcccCCcceEecchh
Q 001897 880 LVELFCYYSELNFTPETVVPNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCNLLRELPLTAQNADTVKEIIGELQ 957 (998)
Q Consensus 880 L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~ 957 (998)
...++.. ...+++|++|+|++|.....+|..+..+++|+.|++++|+....+|..+.++++|+.+....+
T Consensus 512 ~~~~p~~--------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 512 SGEIPDE--------LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred eeeCChH--------HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 3332211 146789999999998877778888888999999999999988899999999999999976543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3.7e-28 Score=308.51 Aligned_cols=393 Identities=22% Similarity=0.230 Sum_probs=249.0
Q ss_pred ccceEEEeecCCcc-ccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC-CCChhhhcccCCceEe
Q 001897 513 NSLKRVSFMNNSIT-KLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH-SLPLSLLQLHNCRALL 590 (998)
Q Consensus 513 ~~l~~l~l~~~~~~-~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~ 590 (998)
.++++|++.+|.+. .+|..+..+++|+.|++++|.....+|.. +.++++|++|++++|.+. .+|..++++++|++|+
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 34555555555443 34444444555555555555333334433 245555555555555544 4445555555555555
Q ss_pred ecCCCCCCCCc-cccCCCCCCeeeecCCCCc-ccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 591 LRDCFYLEDLP-ALGGLTKLQDLDLSATSIR-ELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 591 L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
+++|.....+| .+.++++|++|++++|.+. .+|..+.++++|++|++++|.....+|.. ++.+++|+.|++++|.+.
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCc
Confidence 55554444444 3555555555555555444 44455555555555555555433334433 455555555555555442
Q ss_pred ccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCC----CCCCCCccccEEEEeccc
Q 001897 669 WRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTA----NSLPTKHDERRVTISGID 744 (998)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~ 744 (998)
.. ....++.+++|+.|+++.+.+....+..+..+++|+.+.+..+.+. ..+..+++|+.|++++|.
T Consensus 346 ~~----------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 346 GE----------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred Cc----------CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 21 2244566677777777766665555555666677777777655433 333456789999999998
Q ss_pred CchhhHHH--hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccc
Q 001897 745 LSGEWIGW--LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDL 822 (998)
Q Consensus 745 l~~~~~~~--~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 822 (998)
+++..+.. .+++|+.|+++++.-. ...+..+..+++|+.|++++|.+...... ....++|+.|++++|
T Consensus 416 l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-----~~~~~~L~~L~ls~n 485 (968)
T PLN00113 416 FSGELPSEFTKLPLVYFLDISNNNLQ-----GRINSRKWDMPSLQMLSLARNKFFGGLPD-----SFGSKRLENLDLSRN 485 (968)
T ss_pred eeeECChhHhcCCCCCEEECcCCccc-----CccChhhccCCCCcEEECcCceeeeecCc-----ccccccceEEECcCC
Confidence 87655554 3789999999986432 22334456789999999999987643322 123589999999999
Q ss_pred ccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccc
Q 001897 823 AYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLR 902 (998)
Q Consensus 823 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~ 902 (998)
.....+|..+. .+++|+.|++++|.-...+|. .+..+++|+.|+|++|.-...++.. ...+++|+
T Consensus 486 ~l~~~~~~~~~----~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~--------~~~l~~L~ 550 (968)
T PLN00113 486 QFSGAVPRKLG----SLSELMQLKLSENKLSGEIPD---ELSSCKKLVSLDLSHNQLSGQIPAS--------FSEMPVLS 550 (968)
T ss_pred ccCCccChhhh----hhhccCEEECcCCcceeeCCh---HHcCccCCCEEECCCCcccccCChh--------HhCcccCC
Confidence 77767665443 478999999999854434432 4678999999999998643333211 14689999
Q ss_pred eeecCCCccccccccCCCCCCCccEEEEecCCCCCCCCCC
Q 001897 903 NLELKNLPKLRTICRQKESWQCLEQVKVIKCNLLRELPLT 942 (998)
Q Consensus 903 ~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~~lP~~ 942 (998)
+|++++|+....+|..+..+++|+.|++++|+-...+|..
T Consensus 551 ~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred EEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 9999999888788988889999999999999988889865
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=8e-25 Score=232.92 Aligned_cols=397 Identities=18% Similarity=0.213 Sum_probs=261.2
Q ss_pred cceEEEeecCCccccCCCC---CCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEe
Q 001897 514 SLKRVSFMNNSITKLPDCK---VHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALL 590 (998)
Q Consensus 514 ~l~~l~l~~~~~~~l~~~~---~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 590 (998)
..+-++.+.+.+..+...- +-.+..++|++++| .+..+...+|.++++|+.+++.+|.++.+|...+...||+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEe
Confidence 4555666666655432111 11345667888888 6677777778888899999998888888888888888888888
Q ss_pred ecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 591 LRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 591 L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
|.+|.+.+.-. ++.-++.|+.|||+.|.|+++|.. +..=.++++|+|++|. ++.+..+.+..+.+|-+|.++.|.++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCccc
Confidence 88876444333 478888888889888888877754 5555678888888887 66777766888888888888888774
Q ss_pred ccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCch-
Q 001897 669 WRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSG- 747 (998)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~- 747 (998)
.. ....+.+|++|+.|++..|.+....-..+..+++|+.|.+ ..|+++.
T Consensus 211 tL----------p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl--------------------qrN~I~kL 260 (873)
T KOG4194|consen 211 TL----------PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL--------------------QRNDISKL 260 (873)
T ss_pred cc----------CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh--------------------hhcCcccc
Confidence 22 2345677888888888776665443334444445544444 3333321
Q ss_pred -hhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccccc
Q 001897 748 -EWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLG 826 (998)
Q Consensus 748 -~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 826 (998)
+...+.+.++++|+|.. |.+....-.++-+++.|+.|++++|.+..+..++ ....++|+.|+|++| .+.
T Consensus 261 ~DG~Fy~l~kme~l~L~~-----N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~----WsftqkL~~LdLs~N-~i~ 330 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLET-----NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS----WSFTQKLKELDLSSN-RIT 330 (873)
T ss_pred cCcceeeecccceeeccc-----chhhhhhcccccccchhhhhccchhhhheeecch----hhhcccceeEecccc-ccc
Confidence 12223355666666654 2333334455667788888888888776655433 334678888888877 444
Q ss_pred ccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeec
Q 001897 827 NISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLEL 906 (998)
Q Consensus 827 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l 906 (998)
.+++..-. .+..|++|.++.. ++..+.. +.+..+.+|++|++++..---.+. + ...+..++|+|+.|.+
T Consensus 331 ~l~~~sf~---~L~~Le~LnLs~N-si~~l~e--~af~~lssL~~LdLr~N~ls~~IE--D---aa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 331 RLDEGSFR---VLSQLEELNLSHN-SIDHLAE--GAFVGLSSLHKLDLRSNELSWCIE--D---AAVAFNGLPSLRKLRL 399 (873)
T ss_pred cCChhHHH---HHHHhhhhccccc-chHHHHh--hHHHHhhhhhhhcCcCCeEEEEEe--c---chhhhccchhhhheee
Confidence 44432111 2566777777653 4554432 235678899999988754111111 0 1112246899999999
Q ss_pred CCCccccccccC-CCCCCCccEEEEecCCCCCCCCCCCcccCCcceE---------ecchhhhcccccc
Q 001897 907 KNLPKLRTICRQ-KESWQCLEQVKVIKCNLLRELPLTAQNADTVKEI---------IGELQWWNLLNCD 965 (998)
Q Consensus 907 ~~~~~L~~i~~~-~~~l~~L~~L~i~~C~~L~~lP~~~~~l~~L~~l---------~~~~~w~~~l~w~ 965 (998)
.+ +++++|+.. +..+++||+|++.+++-..--|..+.++ .|++| +|+..|...+..+
T Consensus 400 ~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 400 TG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred cC-ceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHh
Confidence 99 578888764 6789999999999987655558888776 77776 4677776544333
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.7e-22 Score=215.30 Aligned_cols=332 Identities=20% Similarity=0.213 Sum_probs=206.7
Q ss_pred eecCCCccccchh--hhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC
Q 001897 497 VRSGAGLTEVSET--ELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH 574 (998)
Q Consensus 497 ~~~~~~~~~~~~~--~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~ 574 (998)
..+...+.++... .-.++++.+++..|.++.+|.......++..|++.+| .+..+...-+..++.||+||||.|.|.
T Consensus 84 dlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~is 162 (873)
T KOG4194|consen 84 DLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNLIS 162 (873)
T ss_pred eccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhchhh
Confidence 3344444444332 2356778888888888888876666677888888877 666666666677888888888888888
Q ss_pred CCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCccccccccccc
Q 001897 575 SLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGII 651 (998)
Q Consensus 575 ~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l 651 (998)
.+|. ++..-.++++|+|++|.+...-. .|..+.+|.+|.|+.|.++.+|.. +.+|++|+.|+|..|. ++.+..-.+
T Consensus 163 ~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltF 241 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTF 241 (873)
T ss_pred cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhh
Confidence 7775 56666788888888876544333 577788888888888888888765 4458888888888776 444433346
Q ss_pred CCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCC---
Q 001897 652 CRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANS--- 728 (998)
Q Consensus 652 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--- 728 (998)
.+|++|+.|.+..|.+..-.. ..+-.|.+++.|++..|.+.......+.++..|+.|+++.+.+...
T Consensus 242 qgL~Sl~nlklqrN~I~kL~D----------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDD----------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred cCchhhhhhhhhhcCcccccC----------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 778888888877776532111 2344566667777776666665555566666667666665544322
Q ss_pred -CCCCccccEEEEecccCchhhHHH--hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCC
Q 001897 729 -LPTKHDERRVTISGIDLSGEWIGW--LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCA 805 (998)
Q Consensus 729 -~~~~~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 805 (998)
-.-++.|+.|+|+.|+++..-... .++.|+.|+|++ |.+..+.-..+.++++|++|+|++|.+.-...+..
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-----Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa- 385 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH-----NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA- 385 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc-----cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch-
Confidence 233456666777776665433333 256666666665 33333333344556666667666666543332222
Q ss_pred CCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecC
Q 001897 806 AHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQC 850 (998)
Q Consensus 806 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 850 (998)
.....+|+|+.|.+.+| .++.++.-... .++.|+.|++.+.
T Consensus 386 ~~f~gl~~LrkL~l~gN-qlk~I~krAfs---gl~~LE~LdL~~N 426 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTGN-QLKSIPKRAFS---GLEALEHLDLGDN 426 (873)
T ss_pred hhhccchhhhheeecCc-eeeecchhhhc---cCcccceecCCCC
Confidence 22333666666666666 55555543211 3566666666553
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=2.7e-24 Score=229.88 Aligned_cols=346 Identities=21% Similarity=0.239 Sum_probs=203.8
Q ss_pred hcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC--CCChhhhcccCCce
Q 001897 511 LVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH--SLPLSLLQLHNCRA 588 (998)
Q Consensus 511 ~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~ 588 (998)
...+++.|.+....+..+|..+..+.+|..|.+.+| .+..+... ++.++.||.+++..|++. .+|..|.+|..|..
T Consensus 30 qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred HhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhh-hccchhhHHHhhhccccccCCCCchhccccccee
Confidence 345667777777777777777777777777777777 33344333 366777788888777765 57777778888888
Q ss_pred EeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCc
Q 001897 589 LLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSD 666 (998)
Q Consensus 589 L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~ 666 (998)
|+|++|. +++.| .+...+++-+|+|++|+|..+|.. +-+|..|-.|+|++|. +..+|+. +.+|..|++|.+++|.
T Consensus 108 lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 108 LDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCCh
Confidence 8888765 45555 677777788888888888877766 4567777778887776 7777776 7778888888887776
Q ss_pred ccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCc
Q 001897 667 YHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLS 746 (998)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 746 (998)
+.. .-+..|..++.|..|.++...-+- ..++.++..+.+|..++++.|++.
T Consensus 185 L~h----------fQLrQLPsmtsL~vLhms~TqRTl-------------------~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 185 LNH----------FQLRQLPSMTSLSVLHMSNTQRTL-------------------DNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred hhH----------HHHhcCccchhhhhhhcccccchh-------------------hcCCCchhhhhhhhhccccccCCC
Confidence 521 122344445555555554332211 011222223333444444444322
Q ss_pred hhhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccccc
Q 001897 747 GEWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLG 826 (998)
Q Consensus 747 ~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 826 (998)
. .|+.+-.+++|+.|+|++|.+.+... ..+...+|++|+++.| .+.
T Consensus 236 ~----------------------------vPecly~l~~LrrLNLS~N~iteL~~-----~~~~W~~lEtLNlSrN-QLt 281 (1255)
T KOG0444|consen 236 I----------------------------VPECLYKLRNLRRLNLSGNKITELNM-----TEGEWENLETLNLSRN-QLT 281 (1255)
T ss_pred c----------------------------chHHHhhhhhhheeccCcCceeeeec-----cHHHHhhhhhhccccc-hhc
Confidence 1 22333455566666666665543321 1223345666666666 444
Q ss_pred ccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeec
Q 001897 827 NISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLEL 906 (998)
Q Consensus 827 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l 906 (998)
.+|..+. .+++|+.|.+.+ ++|+.-..++ -++.+.+|+.+...+. +|+-++.+. ..+++|+.|.|
T Consensus 282 ~LP~avc----KL~kL~kLy~n~-NkL~FeGiPS-GIGKL~~Levf~aanN-~LElVPEgl--------cRC~kL~kL~L 346 (1255)
T KOG0444|consen 282 VLPDAVC----KLTKLTKLYANN-NKLTFEGIPS-GIGKLIQLEVFHAANN-KLELVPEGL--------CRCVKLQKLKL 346 (1255)
T ss_pred cchHHHh----hhHHHHHHHhcc-CcccccCCcc-chhhhhhhHHHHhhcc-ccccCchhh--------hhhHHHHHhcc
Confidence 4444322 245555554433 2333222211 3556666666665543 233332111 35677777777
Q ss_pred CCCccccccccCCCCCCCccEEEEecCCCCCCCC
Q 001897 907 KNLPKLRTICRQKESWQCLEQVKVIKCNLLRELP 940 (998)
Q Consensus 907 ~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~~lP 940 (998)
+. +.|..+|....-++.|+.|++..+|+|..-|
T Consensus 347 ~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 347 DH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 54 5666677777777788888888877776655
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.2e-20 Score=239.47 Aligned_cols=317 Identities=21% Similarity=0.271 Sum_probs=193.4
Q ss_pred CccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCC-CCcccChhhhcCcCCcEEeCCC
Q 001897 562 ALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSAT-SIRELPRGMENLSNLRRLNLSR 639 (998)
Q Consensus 562 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~ 639 (998)
.||.|++.++.+..+|..+ ...+|+.|++.+|. +..+| .+..+++|++|+++++ .+..+|. +..+++|++|++++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 4566666555555555554 34555566665543 33333 4555555666666554 3445542 45555566666655
Q ss_pred CcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeE
Q 001897 640 THYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQ 719 (998)
Q Consensus 640 ~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 719 (998)
|..+..+|.. ++++++|+.|++++|.....++ ..+ ++++|+.|+++
T Consensus 667 c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp----------~~i-~l~sL~~L~Ls---------------------- 712 (1153)
T PLN03210 667 CSSLVELPSS-IQYLNKLEDLDMSRCENLEILP----------TGI-NLKSLYRLNLS---------------------- 712 (1153)
T ss_pred CCCccccchh-hhccCCCCEEeCCCCCCcCccC----------CcC-CCCCCCEEeCC----------------------
Confidence 5555555554 5555566666555543221111 011 34444444443
Q ss_pred EeecCCCCCCC-CCccccEEEEecccCchhhHHHhhhcCceeecccccCch--hhhhhhhhcccccCCCCCEEEEeCCCC
Q 001897 720 FFIGPTANSLP-TKHDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLD--QMLETLVIDSVGAFASLKSLTIAGSRS 796 (998)
Q Consensus 720 l~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~--~~~~~~~~~~l~~l~~L~~L~L~~~~~ 796 (998)
++.....++ ...+++.|+++++.+........+++|.+|.+.+|.... +....+.+.....+++|+.|+|++|..
T Consensus 713 --gc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 713 --GCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred --CCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 322111111 123677788887775532111236788888887764311 000000111122357899999998865
Q ss_pred ccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEec
Q 001897 797 SLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSF 876 (998)
Q Consensus 797 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~ 876 (998)
.... +...+.+++|+.|+|++|..++.+|... .+++|+.|++++|.+++.++. ..++|+.|++++
T Consensus 791 l~~l----P~si~~L~~L~~L~Ls~C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~ 855 (1153)
T PLN03210 791 LVEL----PSSIQNLHKLEHLEIENCINLETLPTGI-----NLESLESLDLSGCSRLRTFPD------ISTNISDLNLSR 855 (1153)
T ss_pred cccc----ChhhhCCCCCCEEECCCCCCcCeeCCCC-----CccccCEEECCCCCccccccc------cccccCEeECCC
Confidence 4322 2445678899999999998888887654 378899999999988887654 246788888876
Q ss_pred cccchhhhccccccCCCCCCCCCccceeecCCCccccccccCCCCCCCccEEEEecCCCCCCCCC
Q 001897 877 CDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCNLLRELPL 941 (998)
Q Consensus 877 c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~~lP~ 941 (998)
+ .++.++... ..+++|+.|++++|++++.++.....+++|+.|++++|++|+.++.
T Consensus 856 n-~i~~iP~si--------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 856 T-GIEEVPWWI--------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred C-CCccChHHH--------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 4 455544221 4689999999999999999998888899999999999999987753
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.6e-23 Score=224.09 Aligned_cols=339 Identities=23% Similarity=0.259 Sum_probs=228.2
Q ss_pred ccEEeecCCCccccchh-hhcccceEEEeecCCccccCCCCCCCCcceEEEecCCC-CCCCCChhhhcCCCCccEEEcCC
Q 001897 493 CKSLVRSGAGLTEVSET-ELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNF-PLGRVPEKFLDGFPALRVLNLSG 570 (998)
Q Consensus 493 ~~~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~-~~~~l~~~~~~~l~~Lr~L~l~~ 570 (998)
..++......+..+|.. ....++.||++.+|.+..+...+..++.||.+.+..|. ....+|.++| ++.-|.+||||+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecch
Confidence 34566666677777753 34678999999999999888888889999999998774 3457898885 589999999999
Q ss_pred CCCCCCChhhhcccCCceEeecCCCCCCCCc-c-ccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccc
Q 001897 571 TRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-A-LGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQA 648 (998)
Q Consensus 571 ~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~-i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~ 648 (998)
|+++..|..+..-+++-+|+|++|+ +..+| + +-+|.-|-+|||++|++..+|+.+..|.+|++|.|++|+ +..+..
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQL 190 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQL 190 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHH
Confidence 9999999999999999999999976 56666 4 889999999999999999999999999999999999998 444333
Q ss_pred cccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCC
Q 001897 649 GIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANS 728 (998)
Q Consensus 649 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 728 (998)
..+..+++|++|.+++.+-+. .-.+..+..+.+|+.++++.|+++.. ++.+..+.+|+.|+++.+.+...
T Consensus 191 rQLPsmtsL~vLhms~TqRTl---------~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTL---------DNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred hcCccchhhhhhhcccccchh---------hcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceeee
Confidence 335678889999998865431 11235677788888888887776643 44455566666666555433221
Q ss_pred CCCCccccEEEEecccCchhhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCC
Q 001897 729 LPTKHDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHD 808 (998)
Q Consensus 729 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 808 (998)
... ...-.+|++|+++.. .+.. .|..+..++.|++|++.+|.+. ..+.++.+
T Consensus 261 ~~~-------------------~~~W~~lEtLNlSrN-----QLt~-LP~avcKL~kL~kLy~n~NkL~---FeGiPSGI 312 (1255)
T KOG0444|consen 261 NMT-------------------EGEWENLETLNLSRN-----QLTV-LPDAVCKLTKLTKLYANNNKLT---FEGIPSGI 312 (1255)
T ss_pred ecc-------------------HHHHhhhhhhccccc-----hhcc-chHHHhhhHHHHHHHhccCccc---ccCCccch
Confidence 100 001234555555541 1111 2334455566666666655543 12334555
Q ss_pred CCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccch
Q 001897 809 DLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLV 881 (998)
Q Consensus 809 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~ 881 (998)
+.+.+|+.++..+| +++-.|+.+. ++++|+.|.+. |++|..+|. -+.-+|.|+.|++...++|.
T Consensus 313 GKL~~Levf~aanN-~LElVPEglc----RC~kL~kL~L~-~NrLiTLPe---aIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANN-KLELVPEGLC----RCVKLQKLKLD-HNRLITLPE---AIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhhhHHHHhhcc-ccccCchhhh----hhHHHHHhccc-ccceeechh---hhhhcCCcceeeccCCcCcc
Confidence 55666666666555 4554454433 35555555553 345555543 23445556666665555443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=4.4e-23 Score=210.59 Aligned_cols=175 Identities=21% Similarity=0.290 Sum_probs=121.1
Q ss_pred cccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEee
Q 001897 512 VNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLL 591 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L 591 (998)
...+..+.+++|...++|..+.....+..++.++| .+..+|+.+ ..+..|+.|++++|.+..+|++++.+..|..|+.
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 34566777777777777777777777777777777 566677665 5677777777777777777777777777777777
Q ss_pred cCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccc
Q 001897 592 RDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRV 671 (998)
Q Consensus 592 ~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 671 (998)
.+|...+.+++++.+.+|..|++.+|+++++|+..-+++.|++|+...|- ++.+|+. ++.+.+|+.|++..|.+.+
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki~~-- 220 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKIRF-- 220 (565)
T ss_pred cccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhccccc--
Confidence 77665544446777777777777777777777776667777777777665 6777777 7777777777777776532
Q ss_pred cCcccccccccccccccccCceEEEEeecCC
Q 001897 672 KGQEDEGQTNFEELGCLERLLVLSIRLENIP 702 (998)
Q Consensus 672 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 702 (998)
+.+++.+..|..|+++.+.+.
T Consensus 221 ----------lPef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 221 ----------LPEFPGCSLLKELHVGENQIE 241 (565)
T ss_pred ----------CCCCCccHHHHHHHhcccHHH
Confidence 234445555555555444433
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=5.3e-22 Score=223.28 Aligned_cols=403 Identities=21% Similarity=0.244 Sum_probs=177.4
Q ss_pred CCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-
Q 001897 523 NSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP- 601 (998)
Q Consensus 523 ~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp- 601 (998)
..++.+|..+.....+..|++..|. +-..|-.+..+.-+|+.||+++|.+..+|..+..+.+|+.|+++.|. +...|
T Consensus 8 ~~l~~ip~~i~~~~~~~~ln~~~N~-~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~~vp~ 85 (1081)
T KOG0618|consen 8 EQLELIPEQILNNEALQILNLRRNS-LLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IRSVPS 85 (1081)
T ss_pred ccCcccchhhccHHHHHhhhccccc-cccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh-HhhCch
Confidence 3333444433333334444444442 22223333333333555555555555555555555555555555432 33444
Q ss_pred cccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccC--------
Q 001897 602 ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKG-------- 673 (998)
Q Consensus 602 ~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~-------- 673 (998)
+++++.+|++|.|.+|.+..+|.++..+++|+.|+++.|. ...+|.- +..++.+..+..++|..+..++.
T Consensus 86 s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l 163 (1081)
T KOG0618|consen 86 SCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLDL 163 (1081)
T ss_pred hhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhhh
Confidence 4555555555555555555555555555555555555554 3333332 34444444444433311000000
Q ss_pred -cccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHH
Q 001897 674 -QEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGW 752 (998)
Q Consensus 674 -~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 752 (998)
...-+.....++..++. .|+++.+.+.. ..+..+.+|+.+....+.+.......++++.|+..+|.+....+-.
T Consensus 164 ~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p 238 (1081)
T KOG0618|consen 164 RLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHP 238 (1081)
T ss_pred hhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecccc
Confidence 00001112233344443 45665555441 2233344444444333333222223344555555555544333333
Q ss_pred hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccccccccccc
Q 001897 753 LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLV 832 (998)
Q Consensus 753 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~ 832 (998)
...+|+++++++ +.+..+ +.+++.+.+|+.|.+.+|.++..+. ......+|+.|.+..| .++.+|+..
T Consensus 239 ~p~nl~~~dis~-----n~l~~l-p~wi~~~~nle~l~~n~N~l~~lp~-----ri~~~~~L~~l~~~~n-el~yip~~l 306 (1081)
T KOG0618|consen 239 VPLNLQYLDISH-----NNLSNL-PEWIGACANLEALNANHNRLVALPL-----RISRITSLVSLSAAYN-ELEYIPPFL 306 (1081)
T ss_pred ccccceeeecch-----hhhhcc-hHHHHhcccceEecccchhHHhhHH-----HHhhhhhHHHHHhhhh-hhhhCCCcc
Confidence 345566666655 222222 2444555666666666665543331 1222344444444444 333333322
Q ss_pred ccccccCCCccEEEeecCcccccccchhHHHhhCCC-CCEEEEe-------------ccccchhhhccccccCC---CCC
Q 001897 833 GYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPN-LQEIKVS-------------FCDNLVELFCYYSELNF---TPE 895 (998)
Q Consensus 833 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~-L~~L~l~-------------~c~~L~~l~~~~~~~~~---~~~ 895 (998)
. .+.+|+.|++.. .+|.++|. +++..++. |..|..+ ....|..+....+..+. ...
T Consensus 307 e----~~~sL~tLdL~~-N~L~~lp~--~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 307 E----GLKSLRTLDLQS-NNLPSLPD--NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred c----ccceeeeeeehh-ccccccch--HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence 1 144444444433 13333332 11111111 1111111 01122223322222211 112
Q ss_pred CCCCccceeecCCCccccccccC-CCCCCCccEEEEecCCCCCCCCCCCcccCCcceEecc
Q 001897 896 TVVPNLRNLELKNLPKLRTICRQ-KESWQCLEQVKVIKCNLLRELPLTAQNADTVKEIIGE 955 (998)
Q Consensus 896 ~~~p~L~~L~l~~~~~L~~i~~~-~~~l~~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~ 955 (998)
..|++|+.|+|++ +.|.++|.. +..++.|++|.++| .+|+.+|..+..+..|++|++.
T Consensus 380 ~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred ccccceeeeeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhc
Confidence 4567777777777 456666654 45567777777777 4567777666666666666543
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=9.2e-22 Score=201.00 Aligned_cols=259 Identities=24% Similarity=0.260 Sum_probs=212.1
Q ss_pred cceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecC
Q 001897 514 SLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRD 593 (998)
Q Consensus 514 ~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 593 (998)
.+..+.+++|.+..+...+.++..+.++++++| ....+|+.+ +.+..+..|+.++|++..+|..++.+..|+.|+.+.
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccc-hhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 345677888888888888888999999999998 667788776 888999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccC
Q 001897 594 CFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKG 673 (998)
Q Consensus 594 ~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 673 (998)
|...+..++++.+..|..|+..+|++.++|.+++++.+|..|++.+|+ +..+|+..+ +++.|++|++..|-+.
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L~----- 196 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLLE----- 196 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhhh-----
Confidence 887766668999999999999999999999999999999999999998 778888744 4999999998877552
Q ss_pred cccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCC----CCCCCccccEEEEecccCchhh
Q 001897 674 QEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTAN----SLPTKHDERRVTISGIDLSGEW 749 (998)
Q Consensus 674 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~ 749 (998)
..+++++.+.+|..|++..+++.... .+..+..|..|++..+.+.. ....+..+..|++.+|++....
T Consensus 197 ------tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P 268 (565)
T KOG0472|consen 197 ------TLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP 268 (565)
T ss_pred ------cCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc
Confidence 34578999999999999888876543 56777888888877664421 2346678889999999987543
Q ss_pred HHH-hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCC
Q 001897 750 IGW-LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRS 796 (998)
Q Consensus 750 ~~~-~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 796 (998)
... .+.+|+.|++++. .+.. .+..++++ +|+.|-+.||++
T Consensus 269 de~clLrsL~rLDlSNN-----~is~-Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNN-----DISS-LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hHHHHhhhhhhhcccCC-----cccc-CCcccccc-eeeehhhcCCch
Confidence 333 4788999999973 2322 35567888 899999999975
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=3.8e-19 Score=200.55 Aligned_cols=385 Identities=19% Similarity=0.181 Sum_probs=214.5
Q ss_pred cceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecC
Q 001897 514 SLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRD 593 (998)
Q Consensus 514 ~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 593 (998)
++++|++++|.+..+|..+....+|+.|.++.| .+..+|.+. .++.+|++|+|.+|.+..+|.++..+++|++|+++.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 377888888888888887777888888888887 667777554 778888888888888888888888888888888888
Q ss_pred CCCCCCCccccCCCCCCeeeecCC-CCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccccccc
Q 001897 594 CFYLEDLPALGGLTKLQDLDLSAT-SIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVK 672 (998)
Q Consensus 594 ~~~~~~lp~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 672 (998)
|.....++-+..+..+..++.++| ++..++... ++++++..+.....++.+ +..++. .|++..|.+.
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---- 191 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---- 191 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh----
Confidence 765544446777777777777777 333443322 555555555544444444 455554 4666666553
Q ss_pred CcccccccccccccccccCceEEEEeecCCCCCCC------------------chhHhcccceeEEeecC---CCCCCCC
Q 001897 673 GQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTE------------------DLTWIGRLRSFQFFIGP---TANSLPT 731 (998)
Q Consensus 673 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~------------------~l~~l~~L~~L~l~~~~---~~~~~~~ 731 (998)
...+..+.+|+.+....+.+...... .-..-.+|+.++++.+. ++.....
T Consensus 192 ---------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~ 262 (1081)
T KOG0618|consen 192 ---------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGA 262 (1081)
T ss_pred ---------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHh
Confidence 12233333444333322222111000 00001223333333221 1222333
Q ss_pred CccccEEEEecccCchhhHHH-hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCC------
Q 001897 732 KHDERRVTISGIDLSGEWIGW-LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGC------ 804 (998)
Q Consensus 732 ~~~L~~L~l~~~~l~~~~~~~-~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~------ 804 (998)
+.+++.+.+.+|.++.....- -..+|++|...+|. ++ ..++.+.++.+|+.|+|..|.+...|....
T Consensus 263 ~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-----l~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 263 CANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-----LE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNAS 336 (1081)
T ss_pred cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-----hh-hCCCcccccceeeeeeehhccccccchHHHhhhhHH
Confidence 444444444444442211111 12334444333321 11 134455668899999999888766553200
Q ss_pred ---------------CCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCC
Q 001897 805 ---------------AAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNL 869 (998)
Q Consensus 805 ---------------~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L 869 (998)
......++.|+.|.+.+|.......+.+. .+.+|+.|++++ ..|..+|.. .+.+++.|
T Consensus 337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~----~~~hLKVLhLsy-NrL~~fpas--~~~kle~L 409 (1081)
T KOG0618|consen 337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV----NFKHLKVLHLSY-NRLNSFPAS--KLRKLEEL 409 (1081)
T ss_pred HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc----cccceeeeeecc-cccccCCHH--HHhchHHh
Confidence 01123456677777777754444332222 488999999988 467777654 47788999
Q ss_pred CEEEEecc------------ccchhhhccccccCCCCC-CCCCccceeecCCCccccccccCCC-CCCCccEEEEecCCC
Q 001897 870 QEIKVSFC------------DNLVELFCYYSELNFTPE-TVVPNLRNLELKNLPKLRTICRQKE-SWQCLEQVKVIKCNL 935 (998)
Q Consensus 870 ~~L~l~~c------------~~L~~l~~~~~~~~~~~~-~~~p~L~~L~l~~~~~L~~i~~~~~-~l~~L~~L~i~~C~~ 935 (998)
++|.++++ ..|+.+....+.+..++. ..+|.|+.++++. +.|+.+-.... ..|+|++|+++|+..
T Consensus 410 eeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 410 EELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 99999884 333333333333322222 3456666666643 44443322111 125666666666654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=6.6e-13 Score=156.20 Aligned_cols=151 Identities=26% Similarity=0.288 Sum_probs=109.5
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH 574 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~ 574 (998)
.+..+...+..+|. ....+++.|++.+|.++.+|.. .++|++|++++| .+..+|. ..++|+.|++++|.+.
T Consensus 205 ~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~----lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 205 VLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSNPLT 275 (788)
T ss_pred EEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccC----cccccceeeccCCchh
Confidence 34445555666665 3456788999999998888863 478889999888 6667764 2468889999999888
Q ss_pred CCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCC
Q 001897 575 SLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRL 654 (998)
Q Consensus 575 ~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l 654 (998)
.+|... .+|+.|++++|. ++.+|. .+++|+.|++++|+++.+|... .+|+.|++++|. +..+|.. .
T Consensus 276 ~Lp~lp---~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l----p 341 (788)
T PRK15387 276 HLPALP---SGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL----P 341 (788)
T ss_pred hhhhch---hhcCEEECcCCc-cccccc--cccccceeECCCCccccCCCCc---ccccccccccCc-ccccccc----c
Confidence 887633 567888898875 445664 2467999999999888887633 357778888876 6666642 2
Q ss_pred CCccEEEcccCccc
Q 001897 655 SSLEILDMTLSDYH 668 (998)
Q Consensus 655 ~~L~~L~l~~~~~~ 668 (998)
.+|+.|++++|.+.
T Consensus 342 ~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 342 SGLQELSVSDNQLA 355 (788)
T ss_pred cccceEecCCCccC
Confidence 47888999888764
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=3.3e-13 Score=158.75 Aligned_cols=154 Identities=28% Similarity=0.303 Sum_probs=114.5
Q ss_pred cceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecC
Q 001897 514 SLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRD 593 (998)
Q Consensus 514 ~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 593 (998)
.-..|+++.+.+..+|..+. ++++.|.+.+| .+..+|. .+++|++|++++|+++.+|.. .++|+.|++++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCC-cCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 34578889999999998765 47889999988 6777774 357899999999999998854 46888999998
Q ss_pred CCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccC
Q 001897 594 CFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKG 673 (998)
Q Consensus 594 ~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 673 (998)
|. +..+|.+ ..+|+.|++++|+++.+|.. +++|+.|++++|. +..+|.. ..+|+.|++.+|.+..
T Consensus 272 N~-L~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~---- 336 (788)
T PRK15387 272 NP-LTHLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTS---- 336 (788)
T ss_pred Cc-hhhhhhc--hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCcccc----
Confidence 86 4455532 35688999999999998863 4689999999987 6667652 2357778888876631
Q ss_pred ccccccccccccccc-ccCceEEEEeecCCC
Q 001897 674 QEDEGQTNFEELGCL-ERLLVLSIRLENIPS 703 (998)
Q Consensus 674 ~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 703 (998)
+..+ .+|+.|+++.|.+..
T Consensus 337 -----------LP~lp~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 337 -----------LPTLPSGLQELSVSDNQLAS 356 (788)
T ss_pred -----------ccccccccceEecCCCccCC
Confidence 1112 368888887776654
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=2e-15 Score=136.99 Aligned_cols=150 Identities=25% Similarity=0.340 Sum_probs=73.7
Q ss_pred cceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecC
Q 001897 514 SLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRD 593 (998)
Q Consensus 514 ~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 593 (998)
.+.++.+++|.+..+|..+..+.+|.+|++++| .+..+|.++ +.+++||.|+++-|.+..+|..|+.++.|+.|+|.+
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 445555555555555555554555555555544 444444443 445555555555555555555555555555555554
Q ss_pred CCCCC-CCc-cccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcc
Q 001897 594 CFYLE-DLP-ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 594 ~~~~~-~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
|...+ .+| .+..+..|+-|++++|.++-+|..+++|++|+.|.+..|. +-++|.+ ++.++.|++|.+.+|.+
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRL 185 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhccccee
Confidence 43322 233 2444444455555555555555555555555555555444 3344444 44555555555444443
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=3.4e-15 Score=135.51 Aligned_cols=157 Identities=29% Similarity=0.391 Sum_probs=136.8
Q ss_pred CCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-cccCCCCC
Q 001897 531 CKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKL 609 (998)
Q Consensus 531 ~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L 609 (998)
+++...++..|.+++| .+..+|+.+ ..+.+|++|++++|+++.+|.+++.++.|+.|++.-|. +..+| .++.++-|
T Consensus 28 gLf~~s~ITrLtLSHN-Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHN-KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccC-ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchh
Confidence 4566778888899998 778888887 88999999999999999999999999999999999876 55667 89999999
Q ss_pred CeeeecCCCCc--ccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccc
Q 001897 610 QDLDLSATSIR--ELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGC 687 (998)
Q Consensus 610 ~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 687 (998)
+.||+++|++. .+|..+..+..|+.|+++.|. .+.+|+. ++++++||.|.+..|.+. ..+.+++.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll-----------~lpkeig~ 171 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL-----------SLPKEIGD 171 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh-----------hCcHHHHH
Confidence 99999999887 799999999999999999998 6788888 899999999999988763 34578899
Q ss_pred cccCceEEEEeecCCC
Q 001897 688 LERLLVLSIRLENIPS 703 (998)
Q Consensus 688 l~~L~~L~l~~~~~~~ 703 (998)
+++|+.|.+..+.++-
T Consensus 172 lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHHhcccceeee
Confidence 9999999987766543
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=3.7e-14 Score=145.84 Aligned_cols=275 Identities=20% Similarity=0.262 Sum_probs=174.4
Q ss_pred cceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC-ChhhhcccCCceEeecCCCCCCCCc--cccCCCCCCeee
Q 001897 537 ETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL-PLSLLQLHNCRALLLRDCFYLEDLP--ALGGLTKLQDLD 613 (998)
Q Consensus 537 ~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~lp--~i~~l~~L~~L~ 613 (998)
....+.+..| .++.+|+..|+.+++||.|||++|+|+.+ |..|..+..|-.|-+-++..++++| .+++|..|+-|.
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3445566666 67778888888888999999999988866 5678888888888877766788888 488899999998
Q ss_pred ecCCCCcccChh-hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccc--cCccccccccccccccccc
Q 001897 614 LSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRV--KGQEDEGQTNFEELGCLER 690 (998)
Q Consensus 614 l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~l~~l~~ 690 (998)
+.-|++..++.. +..|++|..|.+..|. +..++.+.+..+.+++++.+..|.+.... +...........+++....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 888888866554 7788889888888886 77788777888888888887776642100 0000000000001111111
Q ss_pred CceEEEEeecCCCCCCCchhHhccccee--EEeecCCCC------CCCCCccccEEEEecccCchhhHHHh--hhcCcee
Q 001897 691 LLVLSIRLENIPSQGTEDLTWIGRLRSF--QFFIGPTAN------SLPTKHDERRVTISGIDLSGEWIGWL--LTNASSL 760 (998)
Q Consensus 691 L~~L~l~~~~~~~~~~~~l~~l~~L~~L--~l~~~~~~~------~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~L~~L 760 (998)
.....+....+....... ....++++ .+.....+. -+..+++|++|++++|.++..-..|+ ...+++|
T Consensus 226 ~~p~rl~~~Ri~q~~a~k--f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARK--FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred cchHHHHHHHhcccchhh--hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 100000000000000000 00111111 011111111 13556789999999999887766664 6788888
Q ss_pred ecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccc
Q 001897 761 ILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAY 824 (998)
Q Consensus 761 ~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 824 (998)
.|.. +.++...-..+.++.+|+.|+|++|.++.... ..+..+.+|.+|.|-.|+.
T Consensus 304 ~L~~-----N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~----~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 304 YLTR-----NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP----GAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hcCc-----chHHHHHHHhhhccccceeeeecCCeeEEEec----ccccccceeeeeehccCcc
Confidence 8876 44454455567889999999999999876543 3445567888999988764
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=1.4e-12 Score=154.68 Aligned_cols=134 Identities=24% Similarity=0.388 Sum_probs=56.8
Q ss_pred EEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCC
Q 001897 517 RVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFY 596 (998)
Q Consensus 517 ~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~ 596 (998)
.+.+.++.+..+|..+. +.+..|++++| .+..+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++|..
T Consensus 182 ~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 182 ELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred EEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 34444444444443321 23444444444 3344444332 244555555555444444332 2445555554432
Q ss_pred CCCCc-cccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcc
Q 001897 597 LEDLP-ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 597 ~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
. .+| .+. .+|++|++++|+++.+|..+. .+|++|++++|. +..+|.. +. ++|+.|++++|.+
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSL 316 (754)
T ss_pred C-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCcc
Confidence 2 333 221 244555555554444444332 245555555443 3344432 11 2344444444443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=2.1e-12 Score=153.13 Aligned_cols=247 Identities=17% Similarity=0.186 Sum_probs=163.6
Q ss_pred cceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeec
Q 001897 537 ETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLS 615 (998)
Q Consensus 537 ~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~ 615 (998)
+...|.+.++ .+..+|..+ .+.|+.|++++|+++.+|..+. .+|++|++++|. ++.+| .+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~-~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCC-CcCcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECc
Confidence 3456777776 667778654 3579999999999999998765 589999999886 44566 343 479999999
Q ss_pred CCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEE
Q 001897 616 ATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLS 695 (998)
Q Consensus 616 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 695 (998)
+|.+..+|..+. .+|+.|++++|. +..+|.. +. ++|+.|++++|.+.. ++ ..+. +.|+.|+
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~Lt~-LP----------~~lp--~sL~~L~ 310 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSIRT-LP----------AHLP--SGITHLN 310 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCcccc-Cc----------ccch--hhHHHHH
Confidence 999999998765 589999999886 6778875 33 589999999887642 11 1111 2456666
Q ss_pred EEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHHhhhcCceeecccccCchhhhhhh
Q 001897 696 IRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLDQMLETL 775 (998)
Q Consensus 696 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~ 775 (998)
++.|.+..... .. ..+|+.|++++|.++. .+..++++|+.|++++|.- ..+
T Consensus 311 Ls~N~Lt~LP~---------------------~l--~~sL~~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N~L-~~L---- 361 (754)
T PRK15370 311 VQSNSLTALPE---------------------TL--PPGLKTLEAGENALTS-LPASLPPELQVLDVSKNQI-TVL---- 361 (754)
T ss_pred hcCCccccCCc---------------------cc--cccceeccccCCcccc-CChhhcCcccEEECCCCCC-CcC----
Confidence 65554432111 01 1356667777776654 3444557888888887632 211
Q ss_pred hhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCc
Q 001897 776 VIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCP 851 (998)
Q Consensus 776 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 851 (998)
+..+ .++|+.|+|++|.+...|.. ..++|+.|++++| .+..+|..+......++++..+.+.+.+
T Consensus 362 -P~~l--p~~L~~LdLs~N~Lt~LP~~-------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 362 -PETL--PPTITTLDVSRNALTNLPEN-------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -Chhh--cCCcCEEECCCCcCCCCCHh-------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 1111 35788899998887654421 1247888888887 5556665443322235777888887754
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=2.8e-13 Score=139.51 Aligned_cols=267 Identities=17% Similarity=0.165 Sum_probs=193.3
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccCCCCCC-CCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCC-CC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCKVH-CPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSG-TR 572 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~-~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~-~~ 572 (998)
.+...+.++.++|. ..++....+.+..|.|+.+|...++ +++|+.|++++| .+..+.++.|.+++.|..|-+.+ |+
T Consensus 50 ~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCc
Confidence 45567788888886 5678889999999999999987765 999999999999 77888888889999888877766 89
Q ss_pred CCCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccCh-hhhcCcCCcEEeCCCCcccc-----
Q 001897 573 IHSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPR-GMENLSNLRRLNLSRTHYLK----- 644 (998)
Q Consensus 573 ~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~----- 644 (998)
|+.+|. .|++|..|+-|.+.-|...-... .+..+++|..|.+..|.+..++. .+..+..++++.+..|.++.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 999997 68899999999998876444444 59999999999999999999988 58889999999887765211
Q ss_pred -------cccccccCCCCCccEEEcccCccc-----------cccc----Cc-ccccccccccccccccCceEEEEeecC
Q 001897 645 -------KIQAGIICRLSSLEILDMTLSDYH-----------WRVK----GQ-EDEGQTNFEELGCLERLLVLSIRLENI 701 (998)
Q Consensus 645 -------~~p~~~l~~l~~L~~L~l~~~~~~-----------~~~~----~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~ 701 (998)
..|.. ++...-..-..+....+. ..++ .. ..........++.|++|++|+++.|.+
T Consensus 208 wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 208 WLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred hhhhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 11111 222211111111111000 0000 00 011222334588899999999999999
Q ss_pred CCCCCCchhHhcccceeEEeecCCCC----CCCCCccccEEEEecccCchhhHHHh--hhcCceeeccc
Q 001897 702 PSQGTEDLTWIGRLRSFQFFIGPTAN----SLPTKHDERRVTISGIDLSGEWIGWL--LTNASSLILNN 764 (998)
Q Consensus 702 ~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~L~~L~L~~ 764 (998)
+......+....+++.|.+..+.+.. .+..+..|+.|+|.+|+++...+..+ +..|.+|+|-.
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 88888888888888888887776532 35667789999999999886655543 56677777653
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=4.7e-12 Score=152.64 Aligned_cols=107 Identities=29% Similarity=0.307 Sum_probs=91.2
Q ss_pred hcccceEEEeecCC--ccccCCCC-CCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCc
Q 001897 511 LVNSLKRVSFMNNS--ITKLPDCK-VHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCR 587 (998)
Q Consensus 511 ~~~~l~~l~l~~~~--~~~l~~~~-~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~ 587 (998)
..+.++.|-+..|. +..++..+ ..++.|++|++++|.....+|+.+ +.+-+||+|+++++.+..+|.++++|+.|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 34468888888886 56666554 449999999999998999999886 899999999999999999999999999999
Q ss_pred eEeecCCCCCCCCcc-ccCCCCCCeeeecCCC
Q 001897 588 ALLLRDCFYLEDLPA-LGGLTKLQDLDLSATS 618 (998)
Q Consensus 588 ~L~L~~~~~~~~lp~-i~~l~~L~~L~l~~~~ 618 (998)
||++..+.....+|. +..+++|++|.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 999999887777775 5559999999987755
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.19 E-value=4.6e-09 Score=112.60 Aligned_cols=181 Identities=20% Similarity=0.201 Sum_probs=115.1
Q ss_pred CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHH--
Q 001897 173 CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIR-- 250 (998)
Q Consensus 173 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-- 250 (998)
.....++.|+|++|+||||+++.+++..... .. ..+|+ +....+..++++.|+..++.+... .+.......
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~----~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~ 112 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE----RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELE 112 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC----Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHH
Confidence 3445689999999999999999999875421 11 12333 333457888999999998875432 122222222
Q ss_pred --HHHHHHcCCeEEEEEccccccc--ccccccC---CCCCCCCCcEEEEecCChHHHhhc----------CCCeEEEccC
Q 001897 251 --LHERLLRESNFLLILDDVWETI--DLDSLGV---PQPEDHGGSKIILTSRSLEVCMAM----------KTDVEVRVDL 313 (998)
Q Consensus 251 --l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~---~l~~~~~gs~iivTtR~~~v~~~~----------~~~~~~~l~~ 313 (998)
+......++++++|+||++... .++.+.. ..........|++|.... ..... .....+++.+
T Consensus 113 ~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 113 DFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCC
Confidence 3333445668999999998763 3333321 111222233556666543 21111 1134678999
Q ss_pred CChHHHHHHHHHhhCCCC---CCCCchHHHHHHHHHccCChHHHHHHHHHh
Q 001897 314 LNDDEAWQLFSQNAGVAA---SKDPIKPFAQAIARECKGLPLAIITMGTAM 361 (998)
Q Consensus 314 L~~~~~~~lf~~~~~~~~---~~~~~~~~~~~i~~~c~glPlai~~~~~~l 361 (998)
++.+|..+++...+.... ...-..+..+.|++.++|.|..|..++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999987763221 122345788899999999999999888876
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=6.4e-10 Score=141.24 Aligned_cols=275 Identities=15% Similarity=0.201 Sum_probs=166.5
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCCcch----h-------
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVS-KELNLRWVQAQIAERLNLDVKM----E------- 241 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~----~------- 241 (998)
...+++.|.|++|.||||++.++... ++.++|+++. ...++..+...++..++..... .
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~---------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~ 100 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAG---------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKR 100 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHh---------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccC
Confidence 46789999999999999999998753 2258999996 4456666666666666311100 0
Q ss_pred --hhHHHHHHHHHHHHHc-CCeEEEEEcccccccc--cc-cccCCCCCCCCCcEEEEecCChH---HHhhcCCCeEEEcc
Q 001897 242 --ESMQRLGIRLHERLLR-ESNFLLILDDVWETID--LD-SLGVPQPEDHGGSKIILTSRSLE---VCMAMKTDVEVRVD 312 (998)
Q Consensus 242 --~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~~--~~-~l~~~l~~~~~gs~iivTtR~~~---v~~~~~~~~~~~l~ 312 (998)
.+.......+...+.. +.+++|||||+....+ .. .+...+.....+.++|||||... ...........++.
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~ 180 (903)
T PRK04841 101 QYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIG 180 (903)
T ss_pred CcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecC
Confidence 1122233334444433 4589999999976521 11 22211222344678889999742 11111122344555
Q ss_pred ----CCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCcccch
Q 001897 313 ----LLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAMRGKTNVKLWKHALKEWQKSVPCIKGIE 388 (998)
Q Consensus 313 ----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 388 (998)
+|+.+|+.++|....+..- -.+.+.+|.+.|+|.|+++..++..++...... ......+.. ...
T Consensus 181 ~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~------~~~ 248 (903)
T PRK04841 181 SQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAG------INA 248 (903)
T ss_pred HHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcC------CCc
Confidence 8999999999987765422 245578999999999999998887775442110 011111100 001
Q ss_pred hhhHHHHHh-cccccchhhHHHHhhhccCCCCCccCHHHHHHHHHHhCCcccccchhHHHHhHhHHhhhhhhccccc-cC
Q 001897 389 NNVYNSLKW-SYDALEGNSKYCFLYCSLFPEDFSIEESELVRYWLAEGLIDEQENHEDSFNRGISLIENLKDHCLLE-DG 466 (998)
Q Consensus 389 ~~i~~~l~~-sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~-~~ 466 (998)
..+...+.- -|+.||++.+..++..|+++ .|+.+ +. ..+.+.. .+...+++|.+..++. ..
T Consensus 249 ~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~-----~~l~~~~--------~~~~~L~~l~~~~l~~~~~ 311 (903)
T PRK04841 249 SHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LI-----VRVTGEE--------NGQMRLEELERQGLFIQRM 311 (903)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HH-----HHHcCCC--------cHHHHHHHHHHCCCeeEee
Confidence 234444333 37899999999999999986 33322 22 2222211 1234577888887754 22
Q ss_pred -CCcCeEEEccchhhHHHHHH
Q 001897 467 -ASEGTVKIHDVVRDVAIWIA 486 (998)
Q Consensus 467 -~~~~~~~mHdlv~d~a~~i~ 486 (998)
+....|+.|++++++...-.
T Consensus 312 ~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 312 DDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred cCCCCEEehhHHHHHHHHHHH
Confidence 23457899999999987654
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=4.1e-12 Score=140.43 Aligned_cols=110 Identities=25% Similarity=0.245 Sum_probs=54.6
Q ss_pred hcCCCCccEEEcCCCCCC-----CCChhhhcccCCceEeecCCCCCC------CCc-cccCCCCCCeeeecCCCCc-ccC
Q 001897 557 LDGFPALRVLNLSGTRIH-----SLPLSLLQLHNCRALLLRDCFYLE------DLP-ALGGLTKLQDLDLSATSIR-ELP 623 (998)
Q Consensus 557 ~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~------~lp-~i~~l~~L~~L~l~~~~l~-~lp 623 (998)
+..+.+|++|+++++.+. .++..+...++|++|+++++.... .++ .+.++++|+.|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 444555666666666653 244445555566666666554321 111 2445556666666666554 233
Q ss_pred hhhhcCcC---CcEEeCCCCcccc----cccccccCCC-CCccEEEcccCcc
Q 001897 624 RGMENLSN---LRRLNLSRTHYLK----KIQAGIICRL-SSLEILDMTLSDY 667 (998)
Q Consensus 624 ~~i~~L~~---L~~L~l~~~~~l~----~~p~~~l~~l-~~L~~L~l~~~~~ 667 (998)
..+..+.+ |++|++++|.... .+... +..+ ++|+.|++++|.+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcC
Confidence 33333333 6666666554221 11111 3344 5566666665554
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=7.5e-12 Score=138.31 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=38.2
Q ss_pred hhcccCCceEeecCCCCCCCCc-cccCC---CCCCeeeecCCCCc-----ccChhhhcC-cCCcEEeCCCCcccc----c
Q 001897 580 LLQLHNCRALLLRDCFYLEDLP-ALGGL---TKLQDLDLSATSIR-----ELPRGMENL-SNLRRLNLSRTHYLK----K 645 (998)
Q Consensus 580 i~~l~~L~~L~L~~~~~~~~lp-~i~~l---~~L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~l~----~ 645 (998)
+..+++|++|++++|......+ .+..+ ++|++|++++|.+. .+...+..+ ++|+.|++++|.... .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 3444455555555544433222 22222 22555555555444 122233444 555555555554221 1
Q ss_pred ccccccCCCCCccEEEcccCcc
Q 001897 646 IQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 646 ~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
++.. +..+++|++|++++|.+
T Consensus 157 ~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 157 LAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHHH-HHhCCCcCEEECcCCCC
Confidence 1111 34445555555555544
No 28
>PF05729 NACHT: NACHT domain
Probab=99.11 E-value=6.4e-10 Score=109.67 Aligned_cols=145 Identities=21% Similarity=0.234 Sum_probs=94.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCC-CCeEEEEEeCCCCCHH---HHHHHHHHHhcCCcchhhhHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHR-SGMVIWATVSKELNLR---WVQAQIAERLNLDVKMEESMQRLGIRLH 252 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~-f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 252 (998)
|++.|.|.+|+||||+++.++..+........ +...+|+..+...... .+...|..+...... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 58999999999999999999998865432222 5677788876654432 344444444332111 1111 233
Q ss_pred HHHHcCCeEEEEEcccccccc-c--------cccc-CCCCC-CCCCcEEEEecCChHH---HhhcCCCeEEEccCCChHH
Q 001897 253 ERLLRESNFLLILDDVWETID-L--------DSLG-VPQPE-DHGGSKIILTSRSLEV---CMAMKTDVEVRVDLLNDDE 318 (998)
Q Consensus 253 ~~l~~~~r~LlVlDdv~~~~~-~--------~~l~-~~l~~-~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~ 318 (998)
......++++||||++++... . ..+. ..+.. ..++++++||+|.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 334456799999999987643 1 1111 11121 2468999999998766 3344555689999999999
Q ss_pred HHHHHHHhh
Q 001897 319 AWQLFSQNA 327 (998)
Q Consensus 319 ~~~lf~~~~ 327 (998)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998765
No 29
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.93 E-value=1.2e-07 Score=107.87 Aligned_cols=287 Identities=18% Similarity=0.108 Sum_probs=160.4
Q ss_pred ccchHHHHHHHHHhhc----CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001897 157 QTTASKTLGKLMKLLD----CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 232 (998)
..+|+++++++...+. ......+.|+|++|+|||++++.++++..... ..-..+++++....+...++..|++
T Consensus 32 l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~---~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 32 LPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA---VKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc---CCcEEEEEECCcCCCHHHHHHHHHH
Confidence 3467777777776653 34556788999999999999999999875421 1234677888777788899999999
Q ss_pred HhcCC-cc-hhhhHHHHHHHHHHHHHc-CCeEEEEEccccccc------ccccccCCCCCCCCCcE--EEEecCChHHHh
Q 001897 233 RLNLD-VK-MEESMQRLGIRLHERLLR-ESNFLLILDDVWETI------DLDSLGVPQPEDHGGSK--IILTSRSLEVCM 301 (998)
Q Consensus 233 ~l~~~-~~-~~~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--iivTtR~~~v~~ 301 (998)
++... .+ ...+.......+.+.+.. ++..+||||+++... .+..+...+ ....+++ +|.++....+..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhh
Confidence 98652 11 122344555566666653 346899999998753 122221111 1112333 566655443322
Q ss_pred hc-------CCCeEEEccCCChHHHHHHHHHhhCCCC-CCCCchHHHHHHHHHc----cCChHHHHHHHHHh--c---CC
Q 001897 302 AM-------KTDVEVRVDLLNDDEAWQLFSQNAGVAA-SKDPIKPFAQAIAREC----KGLPLAIITMGTAM--R---GK 364 (998)
Q Consensus 302 ~~-------~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~i~~~c----~glPlai~~~~~~l--~---~~ 364 (998)
.. .....+.+.+++.++..+++..++.... ...--.+..+.|++.+ |..+.|+.++-.+. . +.
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 11 1234678999999999999998873211 1111123344444444 55777776654432 1 11
Q ss_pred --CCHHHHHHHHHHHhhcCCCcccchhhhHHHHHhcccccchhhHHHHhhhccC-CC-CCccCHHHHHHH--HHHhCCcc
Q 001897 365 --TNVKLWKHALKEWQKSVPCIKGIENNVYNSLKWSYDALEGNSKYCFLYCSLF-PE-DFSIEESELVRY--WLAEGLID 438 (998)
Q Consensus 365 --~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~a~f-p~-~~~i~~~~li~~--w~a~g~i~ 438 (998)
-+.+....+.+... .....-.+..||.+.|..+..++.. .. ...+...++... .+++.+-.
T Consensus 268 ~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 268 RKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred CCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 23344544444331 1223445778998877766655422 11 123444444432 22221110
Q ss_pred cccchhHHHHhHhHHhhhhhhccccc
Q 001897 439 EQENHEDSFNRGISLIENLKDHCLLE 464 (998)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~L~~~~l~~ 464 (998)
..-+ ......++..|....+++
T Consensus 335 ~~~~----~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 335 EPRT----HTRFYEYINKLDMLGIIN 356 (394)
T ss_pred CcCc----HHHHHHHHHHHHhcCCeE
Confidence 0101 122344677777777765
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.91 E-value=6.3e-09 Score=109.12 Aligned_cols=194 Identities=20% Similarity=0.209 Sum_probs=102.5
Q ss_pred ccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHH-------
Q 001897 157 QTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQ------- 229 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~------- 229 (998)
+.||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+..+.. .+ .++|+..............
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~----~~-~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK----GY-KVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT------EE-CCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc----CC-cEEEEecccchhhhHHHHHHHHHHHH
Confidence 35788999999999988778999999999999999999999875321 11 3444444444332221111
Q ss_pred --HHHHhcC--C-c-------chhhhHHHHHHHHHHHHHc-CCeEEEEEccccccc-ccc-------ccc---CCCCCCC
Q 001897 230 --IAERLNL--D-V-------KMEESMQRLGIRLHERLLR-ESNFLLILDDVWETI-DLD-------SLG---VPQPEDH 285 (998)
Q Consensus 230 --i~~~l~~--~-~-------~~~~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~-~~~-------~l~---~~l~~~~ 285 (998)
+.+.+.. + . ............+.+.+.+ +++++||+||+.... ... .+. ......
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 154 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ- 154 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-
Confidence 1111210 0 0 0111222333444444433 346999999997765 111 111 111122
Q ss_pred CCcEEEEecCChHHHhh--------cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 286 GGSKIILTSRSLEVCMA--------MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 286 ~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
....+|+++....+... .+....+.+++|+.+++++++...+.....-+.-.+..++|...+||+|..|..
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred CCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 33345555544444332 223345999999999999999997644311112345568999999999988754
No 31
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.86 E-value=1.4e-06 Score=98.04 Aligned_cols=290 Identities=19% Similarity=0.208 Sum_probs=157.0
Q ss_pred ccchHHHHHHHHHhhc----CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccC-CCCeEEEEEeCCCCCHHHHHHHHH
Q 001897 157 QTTASKTLGKLMKLLD----CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAH-RSGMVIWATVSKELNLRWVQAQIA 231 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~ 231 (998)
..+|++++++|..++. ......+.|+|++|+|||++++.+++.+....... .--..+|+.+....+...++..|+
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 96 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELA 96 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHH
Confidence 4467788888777764 34456899999999999999999998764321110 012467888888778889999999
Q ss_pred HHh---cCCcch-hhhHHHHHHHHHHHHH-cCCeEEEEEccccccc-ccc----cccCCC-CCCC--CCcEEEEecCChH
Q 001897 232 ERL---NLDVKM-EESMQRLGIRLHERLL-RESNFLLILDDVWETI-DLD----SLGVPQ-PEDH--GGSKIILTSRSLE 298 (998)
Q Consensus 232 ~~l---~~~~~~-~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~-~~~----~l~~~l-~~~~--~gs~iivTtR~~~ 298 (998)
+++ +...+. ..+..+....+.+.+. .+++++||||+++... ... .+.... .... ....+|.+|....
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~ 176 (365)
T TIGR02928 97 NQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLK 176 (365)
T ss_pred HHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcc
Confidence 988 332211 1223344444555553 3457899999998762 111 111110 1111 2233444554332
Q ss_pred HHhhc-------CCCeEEEccCCChHHHHHHHHHhhCC---C-CCCCCchHHHHHHHHHccCChHHHHHHH-HHh--c--
Q 001897 299 VCMAM-------KTDVEVRVDLLNDDEAWQLFSQNAGV---A-ASKDPIKPFAQAIARECKGLPLAIITMG-TAM--R-- 362 (998)
Q Consensus 299 v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~~~---~-~~~~~~~~~~~~i~~~c~glPlai~~~~-~~l--~-- 362 (998)
....+ .....+.+.+.+.++..+++..++.. . ...++..+...+++....|.|-.+..+. .+. .
T Consensus 177 ~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 177 FRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER 256 (365)
T ss_pred hHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 21111 11246889999999999999988731 1 1122222344556667778874443222 211 1
Q ss_pred -C--CCCHHHHHHHHHHHhhcCCCcccchhhhHHHHHhcccccchhhHHHHhhhccC--CCCCccCHHHHHHHHH--HhC
Q 001897 363 -G--KTNVKLWKHALKEWQKSVPCIKGIENNVYNSLKWSYDALEGNSKYCFLYCSLF--PEDFSIEESELVRYWL--AEG 435 (998)
Q Consensus 363 -~--~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~a~f--p~~~~i~~~~li~~w~--a~g 435 (998)
+ .-+.+....+.+.+. .....-+...||.+.|..+..++.. ..+..+...++...+- ++.
T Consensus 257 ~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~ 323 (365)
T TIGR02928 257 EGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCED 323 (365)
T ss_pred cCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHh
Confidence 1 122333333333321 1223345668888877666555421 1333455555554221 121
Q ss_pred C-cccccchhHHHHhHhHHhhhhhhccccc
Q 001897 436 L-IDEQENHEDSFNRGISLIENLKDHCLLE 464 (998)
Q Consensus 436 ~-i~~~~~~~~~~~~~~~~~~~L~~~~l~~ 464 (998)
+ +.+ . .......++..|...++++
T Consensus 324 ~~~~~-~----~~~~~~~~l~~l~~~gli~ 348 (365)
T TIGR02928 324 IGVDP-L----TQRRISDLLNELDMLGLVE 348 (365)
T ss_pred cCCCC-C----cHHHHHHHHHHHHhcCCeE
Confidence 1 111 1 1233445566676666665
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=1.4e-10 Score=125.37 Aligned_cols=169 Identities=28% Similarity=0.431 Sum_probs=103.1
Q ss_pred EEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCC
Q 001897 517 RVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFY 596 (998)
Q Consensus 517 ~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~ 596 (998)
..+++.|.+..+|..+..|..|..+.+..| .+..+|..+ .++..|.+|||+.|++..+|..++.|+ |+.|.+++|+
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk- 154 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK- 154 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-
Confidence 345556666666665555566666666655 455555544 566666666777666666666666655 6666666654
Q ss_pred CCCCc-cccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcc
Q 001897 597 LEDLP-ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQE 675 (998)
Q Consensus 597 ~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 675 (998)
++.+| .++.+..|..||.+.|.+..+|..+++|.+|+.|++..|+ +..+|.+ ++.| .|..||+++|.+.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis------- 224 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS------- 224 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee-------
Confidence 34444 5666666666677666666666666666666666666665 5556665 4433 3666666666553
Q ss_pred cccccccccccccccCceEEEEeecCCC
Q 001897 676 DEGQTNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 676 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
..+..+.+|+.|+.|.+..|.+..
T Consensus 225 ----~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 225 ----YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ----ecchhhhhhhhheeeeeccCCCCC
Confidence 123456666666666666655544
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.84 E-value=9.8e-11 Score=122.18 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=65.6
Q ss_pred cCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhH
Q 001897 782 AFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGS 861 (998)
Q Consensus 782 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 861 (998)
.+..|+.|+.++|....... ........++|+.|.+..|..+++... ...+-.++.|+.+.+.+|.....-.. ..
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~--l~aLg~~~~~L~~l~l~~c~~fsd~~f--t~l~rn~~~Le~l~~e~~~~~~d~tL-~s 366 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEV--LWALGQHCHNLQVLELSGCQQFSDRGF--TMLGRNCPHLERLDLEECGLITDGTL-AS 366 (483)
T ss_pred hhhHhhhhcccCCCCCchHH--HHHHhcCCCceEEEeccccchhhhhhh--hhhhcCChhhhhhcccccceehhhhH-hh
Confidence 45667777777765432110 011223346666666666655444321 11222355556665555543332211 11
Q ss_pred HHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCcccccccc-CCCCCCCccEEEEecCCCCCC
Q 001897 862 FILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLRTICR-QKESWQCLEQVKVIKCNLLRE 938 (998)
Q Consensus 862 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~l~~L~~L~i~~C~~L~~ 938 (998)
...+.|.|+.|.+++|+.+.+..... -.........|..+.+++||.+..-.. ....+++|+.+++.+|...++
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~---l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRH---LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhh---hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 22345556666666555444320000 000012344555555555555443211 133345555555555544443
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=2e-10 Score=124.25 Aligned_cols=191 Identities=24% Similarity=0.311 Sum_probs=151.7
Q ss_pred EEEeecCCccccCCCCCC--CCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCC
Q 001897 517 RVSFMNNSITKLPDCKVH--CPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDC 594 (998)
Q Consensus 517 ~l~l~~~~~~~l~~~~~~--~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 594 (998)
++.+++..+..+|..-.+ +......+++.| .+..+|..+ ..|-.|..|.|+.|.+..+|..++++..|.||+|+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcccc-ccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 345555555555544333 444456777877 778888876 6788899999999999999999999999999999998
Q ss_pred CCCCCCc-cccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccC
Q 001897 595 FYLEDLP-ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKG 673 (998)
Q Consensus 595 ~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 673 (998)
. +..+| .++.|+ |+.|-+++|+++.+|..++.+..|.+|+.+.|. +..+|.. ++.+.+|+.|.+..|++.
T Consensus 132 q-lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~----- 202 (722)
T KOG0532|consen 132 Q-LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE----- 202 (722)
T ss_pred h-hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-----
Confidence 6 44555 788887 999999999999999999999999999999998 7888887 899999999999988764
Q ss_pred cccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCC
Q 001897 674 QEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTA 726 (998)
Q Consensus 674 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 726 (998)
..+.++..| .|..|+++.|++... +..+..+..|+.|.+..+++.
T Consensus 203 ------~lp~El~~L-pLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 203 ------DLPEELCSL-PLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ------hCCHHHhCC-ceeeeecccCceeec-chhhhhhhhheeeeeccCCCC
Confidence 234566644 478899988887654 445677888888888777653
No 35
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.77 E-value=1.5e-06 Score=94.99 Aligned_cols=237 Identities=14% Similarity=0.085 Sum_probs=126.0
Q ss_pred ccccchHHHHHHHHHhhc-----CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHH
Q 001897 155 EHQTTASKTLGKLMKLLD-----CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQ 229 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 229 (998)
..+.|+++.++.+..++. ......+.++|++|+|||+||+.+++..... + ..+..+.......+. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~-----~---~~~~~~~~~~~~~l~-~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN-----L---KITSGPALEKPGDLA-A 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC-----E---EEeccchhcCchhHH-H
Confidence 345566677777666664 2345678899999999999999999875321 1 122221111222222 2
Q ss_pred HHHHhcCCc----chhhh-HHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHHhhc-
Q 001897 230 IAERLNLDV----KMEES-MQRLGIRLHERLLRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVCMAM- 303 (998)
Q Consensus 230 i~~~l~~~~----~~~~~-~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~- 303 (998)
.+..++... +.... .......+...+.+. +..+|+|+..+...+.. +++ +.+-|..||+...+....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~-~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDF-RLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhh-heeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHH
Confidence 222232111 00000 011122233333333 56677777655544332 122 245566777765443321
Q ss_pred -CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCC
Q 001897 304 -KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAMRGKTNVKLWKHALKEWQKSVP 382 (998)
Q Consensus 304 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~ 382 (998)
.....+++++++.++..+++.+.+..... .--.+....|++.|+|.|-.+..++..+ |..... .....
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~--~~~~~ 216 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQV--RGQKI 216 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHH--cCCCC
Confidence 12356899999999999999988853322 2234667899999999997665554432 111100 00000
Q ss_pred CcccchhhhHHHHHhcccccchhhHHHHh-hhccCCC
Q 001897 383 CIKGIENNVYNSLKWSYDALEGNSKYCFL-YCSLFPE 418 (998)
Q Consensus 383 ~~~~~~~~i~~~l~~sy~~L~~~lk~cfl-~~a~fp~ 418 (998)
.....-......+...|..++++.+..+. ..+.++.
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~ 253 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQG 253 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 00000112223356678888887776665 4466653
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.77 E-value=1.2e-06 Score=96.13 Aligned_cols=240 Identities=15% Similarity=0.125 Sum_probs=125.8
Q ss_pred CcccccchHHHHHHHHHhhc-----CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHH
Q 001897 153 SIEHQTTASKTLGKLMKLLD-----CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQ 227 (998)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~l~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 227 (998)
.+..+.|+++.++.+..++. ......+.|+|++|+||||+|+.+++..... ..++..+. ......+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--------~~~~~~~~-~~~~~~l 93 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--------IRITSGPA-LEKPGDL 93 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--------eEEEeccc-ccChHHH
Confidence 44556666666666554443 2345688999999999999999999875321 11222211 1111222
Q ss_pred HHHHHHhcCCc----chhhhH-HHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHHhh
Q 001897 228 AQIAERLNLDV----KMEESM-QRLGIRLHERLLRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVCMA 302 (998)
Q Consensus 228 ~~i~~~l~~~~----~~~~~~-~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 302 (998)
..++..+.... +..... ......+...+.. .+..+|+|+..+...+.. .++ +.+-|..|+|...+...
T Consensus 94 ~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~-~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 94 AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMED-FRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHh-cceeeeeccCccccceee---cCC---CceEEeecCCcccCCHH
Confidence 33333332111 000000 0111222333333 256666666544432221 111 24556677775443221
Q ss_pred c--CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 001897 303 M--KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAMRGKTNVKLWKHALKEWQKS 380 (998)
Q Consensus 303 ~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~ 380 (998)
. .....+++++++.++..+++.+.+..... .--++....|++.|+|.|-.+..+...+. .|..... ..
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~---~~ 236 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKG---DG 236 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcC---CC
Confidence 1 11356899999999999999988854322 22346788999999999965554444321 1211100 00
Q ss_pred CCCcccchhhhHHHHHhcccccchhhHHHHh-hhccCCCC
Q 001897 381 VPCIKGIENNVYNSLKWSYDALEGNSKYCFL-YCSLFPED 419 (998)
Q Consensus 381 ~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl-~~a~fp~~ 419 (998)
. -....-......+...|..|++..+..+. ....|+.+
T Consensus 237 ~-I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 275 (328)
T PRK00080 237 V-ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG 275 (328)
T ss_pred C-CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 0 00011123344566777888887766664 55666654
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=6.5e-09 Score=100.43 Aligned_cols=106 Identities=30% Similarity=0.462 Sum_probs=33.0
Q ss_pred CCCCccEEEcCCCCCCCCChhhh-cccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhh-cCcCCcEEe
Q 001897 559 GFPALRVLNLSGTRIHSLPLSLL-QLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGME-NLSNLRRLN 636 (998)
Q Consensus 559 ~l~~Lr~L~l~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~-~L~~L~~L~ 636 (998)
+...++.|+|++|.|..+. .++ .+.+|+.|++++|. ++.++.+..+++|++|++++|.|+.++..+. .+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3445677777777766653 344 46677777777664 4455566667777777777777777765553 577777777
Q ss_pred CCCCcccccccc-cccCCCCCccEEEcccCcc
Q 001897 637 LSRTHYLKKIQA-GIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 637 l~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~ 667 (998)
+++|. +..+.. ..+..+++|+.|++.+|++
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCcc
Confidence 77766 333221 2256677777777777765
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=1.7e-08 Score=97.62 Aligned_cols=101 Identities=31% Similarity=0.359 Sum_probs=35.2
Q ss_pred CCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCccc-cCCCCCCeeeecCCCCcccC--hhhhcCcCCcEEe
Q 001897 560 FPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLPAL-GGLTKLQDLDLSATSIRELP--RGMENLSNLRRLN 636 (998)
Q Consensus 560 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i-~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~ 636 (998)
+.+|++|++++|.++.++ .+..+++|++|++++|......+.+ ..+++|++|++++|+|..+- ..+..+++|+.|+
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 455566666666665553 3555666666666655433222223 24566666666666655432 2345566666777
Q ss_pred CCCCcccccccc---cccCCCCCccEEEc
Q 001897 637 LSRTHYLKKIQA---GIICRLSSLEILDM 662 (998)
Q Consensus 637 l~~~~~l~~~p~---~~l~~l~~L~~L~l 662 (998)
+.+|+.. ..+. .++..+++|+.||-
T Consensus 120 L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 120 LEGNPVC-EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred ccCCccc-chhhHHHHHHHHcChhheeCC
Confidence 6666632 2221 24667777777764
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.66 E-value=2.3e-07 Score=95.80 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=93.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+.+.|+|++|+|||+|++.+++..... ...+.|+++... ... ...+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~-----~~~~~y~~~~~~---~~~---------------------~~~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN-----QRTAIYIPLSKS---QYF---------------------SPAVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-----CCCeEEeeHHHh---hhh---------------------hHHHHhh
Confidence 44678999999999999999999976432 224566765311 000 0011122
Q ss_pred HHcCCeEEEEEcccccc---ccccc-ccCCCCC-CCCCcEEE-EecCC---------hHHHhhcCCCeEEEccCCChHHH
Q 001897 255 LLRESNFLLILDDVWET---IDLDS-LGVPQPE-DHGGSKII-LTSRS---------LEVCMAMKTDVEVRVDLLNDDEA 319 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~ 319 (998)
+. +.-+|||||+|.. ..|+. +...+.. ...|..+| +|++. .++...+..+..++++++++++.
T Consensus 89 ~~--~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 89 LE--QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred cc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 22 2458999999874 23432 1111111 12355554 45543 46677777788999999999999
Q ss_pred HHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 320 WQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 320 ~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
++++.+.+.... -.--+++..-|++++.|-.-.+..
T Consensus 167 ~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 167 IIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHH
Confidence 999999885432 222356677888888876655543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=5.7e-09 Score=104.01 Aligned_cols=133 Identities=26% Similarity=0.334 Sum_probs=106.7
Q ss_pred cCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeC
Q 001897 558 DGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNL 637 (998)
Q Consensus 558 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 637 (998)
...+.|..||||+|.|+.+-.++.-++.+|.|++++|. +..+.++..|++|+.|||++|.++++-..-.+|-|.++|.+
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 34578999999999999998899999999999999986 44455688899999999999999888666677889999999
Q ss_pred CCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCC
Q 001897 638 SRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 638 ~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
++|. ++.+. + +++|-+|..||+.+|++.. ......+++++-|+.+.+..|.+..
T Consensus 360 a~N~-iE~LS-G-L~KLYSLvnLDl~~N~Ie~---------ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNK-IETLS-G-LRKLYSLVNLDLSSNQIEE---------LDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhh-Hhhhh-h-hHhhhhheeccccccchhh---------HHHhcccccccHHHHHhhcCCCccc
Confidence 9986 66654 3 7889999999999988731 1234667888888888777665543
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=5.5e-09 Score=104.09 Aligned_cols=126 Identities=30% Similarity=0.394 Sum_probs=67.5
Q ss_pred cccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEee
Q 001897 512 VNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLL 591 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L 591 (998)
|..+..+++++|.+..+..+..-.|.++.|+++.| .+..+.. +..+.+|..||||+|.+.++-..-.+|-|.+.|.|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 44556666666666665555555566666666655 3333322 34555666666666655555444445555555555
Q ss_pred cCCCCCCCCccccCCCCCCeeeecCCCCcccC--hhhhcCcCCcEEeCCCCc
Q 001897 592 RDCFYLEDLPALGGLTKLQDLDLSATSIRELP--RGMENLSNLRRLNLSRTH 641 (998)
Q Consensus 592 ~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 641 (998)
++|. ++.+..+++|.+|.+||+++|+|..+. ..||+|+-|++|.+.+|+
T Consensus 360 a~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 5542 444445555555555555555555442 234555555555555444
No 42
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.58 E-value=1.7e-06 Score=99.61 Aligned_cols=284 Identities=18% Similarity=0.201 Sum_probs=172.0
Q ss_pred HHHHhhcCC-CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCcch---
Q 001897 166 KLMKLLDCD-EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE-LNLRWVQAQIAERLNLDVKM--- 240 (998)
Q Consensus 166 ~l~~~l~~~-~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~--- 240 (998)
++++.|... +.+.+.|..|+|.|||||+-+...... .-..+.|.++.+. .++..+...++..++.-.+.
T Consensus 26 rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~------~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 26 RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAA------DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcC------cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 455555544 789999999999999999999876322 2345899999754 56777888777777632211
Q ss_pred ----------hhhHHHHHHHHHHHHH-cCCeEEEEEcccccccc--c-ccccCCCCCCCCCcEEEEecCChHHH---hhc
Q 001897 241 ----------EESMQRLGIRLHERLL-RESNFLLILDDVWETID--L-DSLGVPQPEDHGGSKIILTSRSLEVC---MAM 303 (998)
Q Consensus 241 ----------~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~~--~-~~l~~~l~~~~~gs~iivTtR~~~v~---~~~ 303 (998)
..+.......+...+. -.+...+||||..-..+ . ..+.-.+.....+-..|||||...-. +.-
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccccee
Confidence 1122233333433332 12478999999764422 1 22222222334577899999975322 111
Q ss_pred CCCeEEEc----cCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 001897 304 KTDVEVRV----DLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAMRGKTNVKLWKHALKEWQK 379 (998)
Q Consensus 304 ~~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~ 379 (998)
-.+...++ =.++.+|+-++|....+..-+ +.-.+.+.+...|-+-|+..++=.++...+.+.-...+
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L----- 250 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL----- 250 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc-----
Confidence 11222333 247899999999887643322 33467889999999999988888887443332211111
Q ss_pred cCCCcccchhhhHH-HHHhcccccchhhHHHHhhhccCCCCCccCHHHHHHHHHHhCCcccccchhHHHHhHhHHhhhhh
Q 001897 380 SVPCIKGIENNVYN-SLKWSYDALEGNSKYCFLYCSLFPEDFSIEESELVRYWLAEGLIDEQENHEDSFNRGISLIENLK 458 (998)
Q Consensus 380 ~~~~~~~~~~~i~~-~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~ 458 (998)
.+...-+.. ...--++.||+++|..++-||+++.= -..|+..- .+ ++.+...+++|.
T Consensus 251 -----sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-----tg--------~~ng~amLe~L~ 308 (894)
T COG2909 251 -----SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-----TG--------EENGQAMLEELE 308 (894)
T ss_pred -----cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-----hc--------CCcHHHHHHHHH
Confidence 111111111 12234688999999999999998541 12232211 11 112444578888
Q ss_pred hccccc--cCCCcCeEEEccchhhHHHHHH
Q 001897 459 DHCLLE--DGASEGTVKIHDVVRDVAIWIA 486 (998)
Q Consensus 459 ~~~l~~--~~~~~~~~~mHdlv~d~a~~i~ 486 (998)
++.++- -.+....|+.|.++.||-+.-.
T Consensus 309 ~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 309 RRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred hCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 887765 3456779999999999876443
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.54 E-value=1.4e-08 Score=104.22 Aligned_cols=196 Identities=19% Similarity=0.134 Sum_probs=96.0
Q ss_pred cCCCCCCeeeecCCCCc-ccC----hhhhcCcCCcEEeCCCCcccccccc-------------cccCCCCCccEEEcccC
Q 001897 604 GGLTKLQDLDLSATSIR-ELP----RGMENLSNLRRLNLSRTHYLKKIQA-------------GIICRLSSLEILDMTLS 665 (998)
Q Consensus 604 ~~l~~L~~L~l~~~~l~-~lp----~~i~~L~~L~~L~l~~~~~l~~~p~-------------~~l~~l~~L~~L~l~~~ 665 (998)
-.+++|++||||.|-+. .-+ .-+..+..|++|.|.+|. ++..-. ..+++-+.|+++...+|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34456666666665443 111 224445566666666654 221111 11344556777766666
Q ss_pred cccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccC
Q 001897 666 DYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDL 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l 745 (998)
.+. +.+....-..+...+.|+.+.+..+.+.......+ ...+..+++|+.|++.+|.+
T Consensus 168 rle------n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al----------------~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 168 RLE------NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTAL----------------AEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred ccc------cccHHHHHHHHHhccccceEEEecccccCchhHHH----------------HHHHHhCCcceeeecccchh
Confidence 542 11111222334555666666666555544332110 01123456677777777776
Q ss_pred chhhHHH------hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeec
Q 001897 746 SGEWIGW------LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHL 819 (998)
Q Consensus 746 ~~~~~~~------~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L 819 (998)
+...-.. .+++|+.|++.+|.--..--..+.-..-...|+|+.|.+.+|.+...............|.|+.|+|
T Consensus 226 t~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnL 305 (382)
T KOG1909|consen 226 TLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNL 305 (382)
T ss_pred hhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcC
Confidence 5322111 2457777777777432221111111111346788888888887653321111112233677888888
Q ss_pred ccc
Q 001897 820 HDL 822 (998)
Q Consensus 820 ~~~ 822 (998)
++|
T Consensus 306 ngN 308 (382)
T KOG1909|consen 306 NGN 308 (382)
T ss_pred Ccc
Confidence 777
No 44
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.49 E-value=3.6e-07 Score=85.87 Aligned_cols=120 Identities=26% Similarity=0.285 Sum_probs=81.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
+-+++.|+|.+|+|||++++.+.+..........-..++|+.+....+...+...|+++++.+.....+...+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34789999999999999999999876432111113356799998888999999999999987766544556666778888
Q ss_pred HHcCCeEEEEEcccccc-c--ccccccCCCCCCCCCcEEEEecCC
Q 001897 255 LLRESNFLLILDDVWET-I--DLDSLGVPQPEDHGGSKIILTSRS 296 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~iivTtR~ 296 (998)
+...+..+||+|+++.. . .++.+.... +..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~--~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLL--NESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHT--CSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHH--hCCCCeEEEEECh
Confidence 87776789999999765 2 222232211 2556677777664
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.1e-08 Score=105.74 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCCcceEEEecCCCCCCCCCh-hhhcCCCCccEEEcCCCCCCC---CChhhhcccCCceEeecCCCCCCCCcc--ccCCC
Q 001897 534 HCPETLTLLLQGNFPLGRVPE-KFLDGFPALRVLNLSGTRIHS---LPLSLLQLHNCRALLLRDCFYLEDLPA--LGGLT 607 (998)
Q Consensus 534 ~~~~l~~L~l~~~~~~~~l~~-~~~~~l~~Lr~L~l~~~~~~~---lp~~i~~l~~L~~L~L~~~~~~~~lp~--i~~l~ 607 (998)
++.+|+...+.++ .+...+. .....|++++.|||++|-+.. +-.-+..|++|+.|+|+.|....-..+ -..+.
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 3555666555544 3333332 334566677777777664442 222344566666666666653322221 23455
Q ss_pred CCCeeeecCCCCc--ccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcc
Q 001897 608 KLQDLDLSATSIR--ELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 608 ~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
+|+.|.|+.|+++ .+-..+..+++|..|++..|..+...... ..-+..|+.|++++|++
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNL 258 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcc
Confidence 6666666666655 22233344566666666655311111111 23344555666665554
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=2e-07 Score=106.10 Aligned_cols=170 Identities=33% Similarity=0.436 Sum_probs=92.8
Q ss_pred cceEEEeecCCccccCCCCCCCC-cceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeec
Q 001897 514 SLKRVSFMNNSITKLPDCKVHCP-ETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLR 592 (998)
Q Consensus 514 ~l~~l~l~~~~~~~l~~~~~~~~-~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 592 (998)
.+..+.+.++.+..++....... ++..|++++| .+..+|.. ...++.|+.|++++|++..+|...+.+++|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhccccccccc-chhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 45566666666666665554442 5666666665 44444322 255666666666666666666655566666666666
Q ss_pred CCCCCCCCc-cccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccc
Q 001897 593 DCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRV 671 (998)
Q Consensus 593 ~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 671 (998)
+|. +..+| .+..+.+|++|.+++|.+...+..+.++.++..|.+.++. +..++.. ++.+++|+.|++++|.+.
T Consensus 195 ~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~--- 268 (394)
T COG4886 195 GNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS--- 268 (394)
T ss_pred CCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc---
Confidence 654 33344 3445555666666666555555556666666666655554 3332332 556666666666655542
Q ss_pred cCcccccccccccccccccCceEEEEeec
Q 001897 672 KGQEDEGQTNFEELGCLERLLVLSIRLEN 700 (998)
Q Consensus 672 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 700 (998)
.+..++.+.+|+.|+++.+.
T Consensus 269 ---------~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 269 ---------SISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ---------ccccccccCccCEEeccCcc
Confidence 11224555555555554443
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.6e-07 Score=106.88 Aligned_cols=168 Identities=29% Similarity=0.419 Sum_probs=142.7
Q ss_pred EeecCCCccccchhhhc--ccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 496 LVRSGAGLTEVSETELV--NSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 496 l~~~~~~~~~~~~~~~~--~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
+......+..++..... .+++.+++.+|.+..+|..+..++.|..|++++| .+..++... ...+.|+.|++++|.+
T Consensus 121 L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~-~~~~~L~~L~ls~N~i 198 (394)
T COG4886 121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLL-SNLSNLNNLDLSGNKI 198 (394)
T ss_pred EecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhh-hhhhhhhheeccCCcc
Confidence 33444455555554333 2899999999999999888888999999999999 677777643 3789999999999999
Q ss_pred CCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCC
Q 001897 574 HSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICR 653 (998)
Q Consensus 574 ~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~ 653 (998)
..+|..+..+.+|++|.+++|.....+..+.++.++..|.+.++.+..+|..++.+.+|+.|++++|. +..++. ++.
T Consensus 199 ~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~--~~~ 275 (394)
T COG4886 199 SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSISS--LGS 275 (394)
T ss_pred ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc-cccccc--ccc
Confidence 99999988899999999999876666668999999999999999999889999999999999999997 777776 889
Q ss_pred CCCccEEEcccCccc
Q 001897 654 LSSLEILDMTLSDYH 668 (998)
Q Consensus 654 l~~L~~L~l~~~~~~ 668 (998)
+.+|+.|+++++.+.
T Consensus 276 ~~~l~~L~~s~n~~~ 290 (394)
T COG4886 276 LTNLRELDLSGNSLS 290 (394)
T ss_pred cCccCEEeccCcccc
Confidence 999999999988764
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.44 E-value=1.1e-08 Score=107.16 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=106.2
Q ss_pred hhhcCceeecccccCchhhhhhhhhcc-cccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccc
Q 001897 753 LLTNASSLILNNCWGLDQMLETLVIDS-VGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGL 831 (998)
Q Consensus 753 ~~~~L~~L~L~~c~~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 831 (998)
.+..|+.|..++|...... .+.. -.+.++|+.|.+++|...... ++.....+.++|+.+++..|....+- .
T Consensus 292 ~c~~lq~l~~s~~t~~~d~----~l~aLg~~~~~L~~l~l~~c~~fsd~--~ft~l~rn~~~Le~l~~e~~~~~~d~--t 363 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDE----VLWALGQHCHNLQVLELSGCQQFSDR--GFTMLGRNCPHLERLDLEECGLITDG--T 363 (483)
T ss_pred hhhHhhhhcccCCCCCchH----HHHHHhcCCCceEEEeccccchhhhh--hhhhhhcCChhhhhhcccccceehhh--h
Confidence 3567788888888765433 1122 235688888888888753221 22233446788888888888544332 1
Q ss_pred cccccccCCCccEEEeecCcccccccch--hHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCC
Q 001897 832 VGYLGLRFSKLRLMEVTQCPRLKYLLTY--GSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNL 909 (998)
Q Consensus 832 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~--~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~ 909 (998)
+......++.|+.+.++.|...++.... .+....+..|+.+++++|+.+.+-..... ...++|+.+++.+|
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-------~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-------SICRNLERIELIDC 436 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH-------hhCcccceeeeech
Confidence 2233336888899988888776665211 11224677899999999998876544332 35789999999999
Q ss_pred ccccccccC--CCCCCCccEEEEec
Q 001897 910 PKLRTICRQ--KESWQCLEQVKVIK 932 (998)
Q Consensus 910 ~~L~~i~~~--~~~l~~L~~L~i~~ 932 (998)
.....-+.. ..++|+++......
T Consensus 437 q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 437 QDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hhhhhhhhHHHHhhCccceehhhcc
Confidence 877754432 45678877766654
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.8e-08 Score=103.80 Aligned_cols=206 Identities=20% Similarity=0.234 Sum_probs=136.0
Q ss_pred hcccceEEEeecCCccccCC--CCCCCCcceEEEecCCCCCCCCC--hhhhcCCCCccEEEcCCCCCCCCChh--hhccc
Q 001897 511 LVNSLKRVSFMNNSITKLPD--CKVHCPETLTLLLQGNFPLGRVP--EKFLDGFPALRVLNLSGTRIHSLPLS--LLQLH 584 (998)
Q Consensus 511 ~~~~l~~l~l~~~~~~~l~~--~~~~~~~l~~L~l~~~~~~~~l~--~~~~~~l~~Lr~L~l~~~~~~~lp~~--i~~l~ 584 (998)
-..+++.+++.++.+...+. -...|++++.|+++.| .+.... ..+...+++|+.|+++.|.+....++ -..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35689999999988876663 4556999999999998 332211 23457899999999999987754432 23689
Q ss_pred CCceEeecCCCCCCC-Cc-cccCCCCCCeeeecCC-CCcccChhhhcCcCCcEEeCCCCcccccccc-cccCCCCCccEE
Q 001897 585 NCRALLLRDCFYLED-LP-ALGGLTKLQDLDLSAT-SIRELPRGMENLSNLRRLNLSRTHYLKKIQA-GIICRLSSLEIL 660 (998)
Q Consensus 585 ~L~~L~L~~~~~~~~-lp-~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~l~~l~~L~~L 660 (998)
+|+.|.|+.|..... +. -...+++|+.|++.+| .+..-......++.|+.|+|++|..+ .++. ...+.++.|..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 999999999975421 22 2567899999999998 44332333456788999999999854 4442 237889999999
Q ss_pred EcccCcccccccCcccccccccccccccccCceEEEEeecCCC-CCCCchhHhcccceeEEee
Q 001897 661 DMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPS-QGTEDLTWIGRLRSFQFFI 722 (998)
Q Consensus 661 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~ 722 (998)
+++.|.+...... ...........++|+.|.+..|++.. .....+..+++|+.|.+..
T Consensus 277 nls~tgi~si~~~----d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 277 NLSSTGIASIAEP----DVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hccccCcchhcCC----CccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 9988876421110 01111223456677888877666532 2233334444444444433
No 50
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.42 E-value=2.9e-06 Score=96.11 Aligned_cols=162 Identities=15% Similarity=0.220 Sum_probs=95.0
Q ss_pred HHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCcchhhhHH
Q 001897 167 LMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDVKMEESMQ 245 (998)
Q Consensus 167 l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~ 245 (998)
+..++.......+.++|++|+||||+|+.+++.... . |+.++... +..+ .+.++
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~-----~-----~~~l~a~~~~~~~-ir~ii-------------- 81 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA-----P-----FEALSAVTSGVKD-LREVI-------------- 81 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC-----C-----EEEEecccccHHH-HHHHH--------------
Confidence 566666677778999999999999999999886431 1 22222111 1111 11111
Q ss_pred HHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEE--ecCChH--HH-hhcCCCeEEEccCCChHH
Q 001897 246 RLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIIL--TSRSLE--VC-MAMKTDVEVRVDLLNDDE 318 (998)
Q Consensus 246 ~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv--TtR~~~--v~-~~~~~~~~~~l~~L~~~~ 318 (998)
.........+++.+|++|+++... ..+.+...+. .|..++| ||.+.. +. ...+....+++.+++.++
T Consensus 82 ---~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~ 155 (413)
T PRK13342 82 ---EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEED 155 (413)
T ss_pred ---HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHH
Confidence 111111223458899999998763 2333333222 2444554 344322 11 112223678999999999
Q ss_pred HHHHHHHhhCCC-CCC-CCchHHHHHHHHHccCChHHHHHHHH
Q 001897 319 AWQLFSQNAGVA-ASK-DPIKPFAQAIARECKGLPLAIITMGT 359 (998)
Q Consensus 319 ~~~lf~~~~~~~-~~~-~~~~~~~~~i~~~c~glPlai~~~~~ 359 (998)
.+.++.+.+... ... .-..+..+.|++.|+|.+..+..+..
T Consensus 156 i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 156 IEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999998876321 111 23356677899999999877654443
No 51
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=4.4e-06 Score=86.90 Aligned_cols=166 Identities=16% Similarity=0.188 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch
Q 001897 161 SKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM 240 (998)
Q Consensus 161 ~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 240 (998)
...++.+.+++.......|.|+|+.|+|||++|+.+++..... ....++++++.-. ...
T Consensus 23 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-----~~~~~~i~~~~~~------~~~---------- 81 (226)
T TIGR03420 23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-----GKSAIYLPLAELA------QAD---------- 81 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-----CCcEEEEeHHHHH------HhH----------
Confidence 4456666666555667789999999999999999998875321 2335566553221 100
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEEEccccccc---cc-ccccCCCCC-CCCCcEEEEecCCh---------HHHhhcCCC
Q 001897 241 EESMQRLGIRLHERLLRESNFLLILDDVWETI---DL-DSLGVPQPE-DHGGSKIILTSRSL---------EVCMAMKTD 306 (998)
Q Consensus 241 ~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~ 306 (998)
..+...+.+ .-+|||||++... .| +.+...+.. ...+.++|+||+.. .+...+...
T Consensus 82 --------~~~~~~~~~--~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 --------PEVLEGLEQ--ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred --------HHHHhhccc--CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011111222 3489999997653 22 222221111 12344788888742 222333335
Q ss_pred eEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHH
Q 001897 307 VEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMG 358 (998)
Q Consensus 307 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 358 (998)
..+++.++++++...++...+.... ..--++..+.|++.+.|.|..+..+.
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 6899999999999999887653211 12234566778888888887765543
No 52
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.37 E-value=1.3e-06 Score=90.33 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=65.9
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC--CCHHHHHHHH-----HHHhcCCcchhh-hHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE--LNLRWVQAQI-----AERLNLDVKMEE-SMQ 245 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i-----~~~l~~~~~~~~-~~~ 245 (998)
..-..++|+|++|+|||||++.+|+.... .+|+.++|+.+... +++.++++.+ +..++.+..... ...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~----~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~ 89 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK----NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAE 89 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc----ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHH
Confidence 34578999999999999999999997542 47999999998776 7999999999 444443221111 111
Q ss_pred HHHHHHHHHHHcCCeEEEEEcccccc
Q 001897 246 RLGIRLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 246 ~~~~~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
............++++++++|++...
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 22222233334567999999999755
No 53
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.31 E-value=2.4e-05 Score=90.98 Aligned_cols=202 Identities=15% Similarity=0.103 Sum_probs=114.5
Q ss_pred chHHHHHHHHHhhcC----C-CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCC--eEEEEEeCCCCCHHHHHHHHH
Q 001897 159 TASKTLGKLMKLLDC----D-EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSG--MVIWATVSKELNLRWVQAQIA 231 (998)
Q Consensus 159 ~~~~~~~~l~~~l~~----~-~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~ 231 (998)
+|++++++|...+.+ . ...++.|+|++|.|||+.++.|.+.+.......... .+++|.+....+...+...|.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~ 838 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLY 838 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHH
Confidence 567777777666532 2 335788999999999999999998875332122221 367888887788899999999
Q ss_pred HHhcCCcch-hhhHHHHHHHHHHHHHc--CCeEEEEEcccccccc--cccccCCCC-CCCCCcEEEE--ecCCh------
Q 001897 232 ERLNLDVKM-EESMQRLGIRLHERLLR--ESNFLLILDDVWETID--LDSLGVPQP-EDHGGSKIIL--TSRSL------ 297 (998)
Q Consensus 232 ~~l~~~~~~-~~~~~~~~~~l~~~l~~--~~r~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~iiv--TtR~~------ 297 (998)
+++....+. ..........+...+.. +...+||||+++.... -+.+...+. ....+++|+| +|.+.
T Consensus 839 qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperL 918 (1164)
T PTZ00112 839 KQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERL 918 (1164)
T ss_pred HHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhh
Confidence 888433322 11223334444444422 2245899999976531 011110010 1123555544 33321
Q ss_pred --HHHhhcCCCeEEEccCCChHHHHHHHHHhhCCCC---CCCCchHHHHHHHHHccCChHHHHHHHHHh
Q 001897 298 --EVCMAMKTDVEVRVDLLNDDEAWQLFSQNAGVAA---SKDPIKPFAQAIARECKGLPLAIITMGTAM 361 (998)
Q Consensus 298 --~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~~i~~~c~glPlai~~~~~~l 361 (998)
.+...++ ...+...|.+.++-.+++..++.... .+..++-+|+.++..-|-.-.|+.++-.+.
T Consensus 919 dPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 919 IPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2222222 22466799999999999999985321 112223333333333444556666555444
No 54
>PF13173 AAA_14: AAA domain
Probab=98.30 E-value=1.8e-06 Score=80.37 Aligned_cols=119 Identities=21% Similarity=0.176 Sum_probs=77.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
-+++.|.|+.|+||||++++++.+.. ....++++++.+....... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~------~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL------PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc------ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhh
Confidence 36899999999999999999998643 1244677776543221100 000 112222222
Q ss_pred HcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHHhh------cCCCeEEEccCCChHH
Q 001897 256 LRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVCMA------MKTDVEVRVDLLNDDE 318 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~~ 318 (998)
.. ++.+++||++....+|......+.+..+..+|++|+........ .+....+++.||+-.|
T Consensus 59 ~~-~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 59 KP-GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cc-CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 22 47889999999988887766555555567899999987666532 1223467899998766
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.30 E-value=2.7e-05 Score=82.41 Aligned_cols=207 Identities=14% Similarity=0.183 Sum_probs=116.2
Q ss_pred HHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHH
Q 001897 167 LMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQR 246 (998)
Q Consensus 167 l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 246 (998)
|-..+..+.+.-+-+||++|+||||||+.+...... .+..++...+-.+-.+++++
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~----------~f~~~sAv~~gvkdlr~i~e-------------- 94 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA----------AFEALSAVTSGVKDLREIIE-------------- 94 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC----------ceEEeccccccHHHHHHHHH--------------
Confidence 444556778888999999999999999999875332 13333333322222222222
Q ss_pred HHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEE--ecCChHH--Hh-hcCCCeEEEccCCChHHH
Q 001897 247 LGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIIL--TSRSLEV--CM-AMKTDVEVRVDLLNDDEA 319 (998)
Q Consensus 247 ~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv--TtR~~~v--~~-~~~~~~~~~l~~L~~~~~ 319 (998)
+-++....++|.+|++|.|.... +-+.+ +|.-..|.-|+| ||-+... -. ..+-..++.+++|+.++-
T Consensus 95 ---~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di 168 (436)
T COG2256 95 ---EARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDI 168 (436)
T ss_pred ---HHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHH
Confidence 22223334569999999997652 22322 444566777776 4444321 11 223456899999999999
Q ss_pred HHHHHHhhCC-CC----CCCCc-hHHHHHHHHHccCChHHHHHHHHHh---c-CCC--CHHHHHHHHHHHhhcCCCc--c
Q 001897 320 WQLFSQNAGV-AA----SKDPI-KPFAQAIARECKGLPLAIITMGTAM---R-GKT--NVKLWKHALKEWQKSVPCI--K 385 (998)
Q Consensus 320 ~~lf~~~~~~-~~----~~~~~-~~~~~~i~~~c~glPlai~~~~~~l---~-~~~--~~~~w~~~~~~l~~~~~~~--~ 385 (998)
.+++.+.+.. .. ....+ ++....+++.++|---+.-....+. . ... ..+.-++++++ ..... .
T Consensus 169 ~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~---~~~~~Dk~ 245 (436)
T COG2256 169 KKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQR---RSARFDKD 245 (436)
T ss_pred HHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhh---hhhccCCC
Confidence 9999984421 11 11112 3456678888888655443322222 1 111 12333333332 22111 1
Q ss_pred -cchhhhHHHHHhcccccchhh
Q 001897 386 -GIENNVYNSLKWSYDALEGNS 406 (998)
Q Consensus 386 -~~~~~i~~~l~~sy~~L~~~l 406 (998)
+..-++..+|.-|...-.++.
T Consensus 246 gD~hYdliSA~hKSvRGSD~dA 267 (436)
T COG2256 246 GDAHYDLISALHKSVRGSDPDA 267 (436)
T ss_pred cchHHHHHHHHHHhhccCCcCH
Confidence 123367777777777765554
No 56
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.6e-06 Score=103.31 Aligned_cols=104 Identities=24% Similarity=0.368 Sum_probs=80.8
Q ss_pred CccEEEcCCCCCC-CCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCc-ccChhhhcCcCCcEEeCC
Q 001897 562 ALRVLNLSGTRIH-SLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIR-ELPRGMENLSNLRRLNLS 638 (998)
Q Consensus 562 ~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 638 (998)
.++.|+|++|.+. .+|..++++++|++|+|++|.....+| .++.+++|+.|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888876 678888888888888888887777777 6888888888888888887 678888888888888888
Q ss_pred CCcccccccccccCC-CCCccEEEcccCc
Q 001897 639 RTHYLKKIQAGIICR-LSSLEILDMTLSD 666 (998)
Q Consensus 639 ~~~~l~~~p~~~l~~-l~~L~~L~l~~~~ 666 (998)
+|.....+|.. ++. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 88766677766 443 3456667766654
No 57
>PRK08727 hypothetical protein; Validated
Probab=98.26 E-value=1.7e-05 Score=82.09 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=90.7
Q ss_pred CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Q 001897 173 CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLH 252 (998)
Q Consensus 173 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 252 (998)
......+.|+|..|+|||+|++.+++..... ...++++++.+ ....+. ...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-----~~~~~y~~~~~------~~~~~~------------------~~~ 88 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA-----GRSSAYLPLQA------AAGRLR------------------DAL 88 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-----CCcEEEEeHHH------hhhhHH------------------HHH
Confidence 3344579999999999999999998875432 22456665422 111110 111
Q ss_pred HHHHcCCeEEEEEccccccc---cccc-ccCCCC-CCCCCcEEEEecCC---------hHHHhhcCCCeEEEccCCChHH
Q 001897 253 ERLLRESNFLLILDDVWETI---DLDS-LGVPQP-EDHGGSKIILTSRS---------LEVCMAMKTDVEVRVDLLNDDE 318 (998)
Q Consensus 253 ~~l~~~~r~LlVlDdv~~~~---~~~~-l~~~l~-~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~ 318 (998)
+.+. +--+|||||+.... .|.. +...+. ....|..||+||+. .++...+.....+++++++.++
T Consensus 89 ~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~ 166 (233)
T PRK08727 89 EALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVA 166 (233)
T ss_pred HHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHH
Confidence 2222 24699999997542 2221 111111 01235669999974 3333444556789999999999
Q ss_pred HHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 319 AWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 319 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
-.+++.+++.... -.--++...-|++.+.|-.-.+
T Consensus 167 ~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 167 RAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 9999998774322 1223456778888887654443
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=98.23 E-value=7e-05 Score=86.71 Aligned_cols=178 Identities=16% Similarity=0.138 Sum_probs=100.7
Q ss_pred ccchHHHHHHHHHhhcC----CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001897 157 QTTASKTLGKLMKLLDC----DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 232 (998)
..+.++.++.+..|+.. ...+.+.|+|++|+||||+|+.+++.+. ++ .+-++.++..+...+ ..++.
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~-------~~-~ielnasd~r~~~~i-~~~i~ 86 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG-------WE-VIELNASDQRTADVI-ERVAG 86 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-------CC-EEEEcccccccHHHH-HHHHH
Confidence 33445555666665542 2367899999999999999999998742 22 344455543333322 22222
Q ss_pred HhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc------cccccCCCCCCCCCcEEEEecCCh-HHHh--hc
Q 001897 233 RLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID------LDSLGVPQPEDHGGSKIILTSRSL-EVCM--AM 303 (998)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~iivTtR~~-~v~~--~~ 303 (998)
..... ..+.+.++-+||+|+++.... +..+...+. ..+..||+|+.+. .... .-
T Consensus 87 ~~~~~---------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 87 EAATS---------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred Hhhcc---------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh
Confidence 11100 001122478999999987532 222322221 1233466665432 1211 11
Q ss_pred CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHh
Q 001897 304 KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAM 361 (998)
Q Consensus 304 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 361 (998)
.....+++.+++.++....+.+.+...... --.+....|++.++|-.-.+......+
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIE-CDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 234578999999999988888777432222 124677899999999766654433333
No 59
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=3.3e-06 Score=90.57 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=63.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC--CHHHHHHHHHHHhcCCc-c--hhh--hHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL--NLRWVQAQIAERLNLDV-K--MEE--SMQRL 247 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~-~--~~~--~~~~~ 247 (998)
.-...+|+|++|+||||||+.+|+.+.. .+|+.++||.+.+.. ++.++++.|...+-... + ... .....
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~----nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~ 243 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITT----NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEM 243 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHh----hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHH
Confidence 4467899999999999999999998753 389999999999887 78888888863221111 1 100 11111
Q ss_pred HHHHHHH-HHcCCeEEEEEcccccc
Q 001897 248 GIRLHER-LLRESNFLLILDDVWET 271 (998)
Q Consensus 248 ~~~l~~~-l~~~~r~LlVlDdv~~~ 271 (998)
.....++ ...+++++|++|++...
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEEChHHH
Confidence 1122222 24567999999999654
No 60
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=4e-06 Score=99.93 Aligned_cols=107 Identities=25% Similarity=0.322 Sum_probs=91.7
Q ss_pred cceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC-CCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeee
Q 001897 537 ETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH-SLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDL 614 (998)
Q Consensus 537 ~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l 614 (998)
.+..|++++|.....+|.. +..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.....+| .++++++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4678888888655677766 488999999999999997 889999999999999999999888888 6999999999999
Q ss_pred cCCCCc-ccChhhhcC-cCCcEEeCCCCcccc
Q 001897 615 SATSIR-ELPRGMENL-SNLRRLNLSRTHYLK 644 (998)
Q Consensus 615 ~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~l~ 644 (998)
++|.+. .+|..++.+ .++..+++.+|..+.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcccc
Confidence 999988 899988764 567788888876443
No 61
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.20 E-value=9.8e-06 Score=77.82 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcc
Q 001897 160 ASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVK 239 (998)
Q Consensus 160 ~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 239 (998)
++..+..+...+.....+.+.|+|.+|+||||+++.+++.+.. .-..++++..............+...
T Consensus 3 ~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 3 QEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-----PGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred hHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-----CCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4556777777777666788999999999999999999987531 12345667665443322222111100
Q ss_pred hhhhHHHHHHHHHHHHHcCCeEEEEEcccccc-----cccccccCCCCC---CCCCcEEEEecCCh
Q 001897 240 MEESMQRLGIRLHERLLRESNFLLILDDVWET-----IDLDSLGVPQPE---DHGGSKIILTSRSL 297 (998)
Q Consensus 240 ~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~-----~~~~~l~~~l~~---~~~gs~iivTtR~~ 297 (998)
............+..++|+||++.. ..+......... ...+..||+||...
T Consensus 72 -------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111112334789999999853 112221111211 13577888888764
No 62
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.4e-06 Score=68.82 Aligned_cols=59 Identities=34% Similarity=0.576 Sum_probs=39.5
Q ss_pred CCCCeeeecCCCCcccCh-hhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCc
Q 001897 607 TKLQDLDLSATSIRELPR-GMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSD 666 (998)
Q Consensus 607 ~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~ 666 (998)
++|++|++++|+++.+|. .+..+++|++|++++|. +..++++.+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 356667777777776664 35667777777777665 566666666777777777776664
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=7.2e-08 Score=96.45 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=52.0
Q ss_pred CCCccccEEEEecccCchhhHHHh--hhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCC
Q 001897 730 PTKHDERRVTISGIDLSGEWIGWL--LTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAH 807 (998)
Q Consensus 730 ~~~~~L~~L~l~~~~l~~~~~~~~--~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 807 (998)
.+|..|+.|.+.|+.+++.....+ -.+|+.|+|+.|.+....--.+ .+.+++.|..|+|+.|......... ..
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l---l~~scs~L~~LNlsWc~l~~~~Vtv--~V 281 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL---LLSSCSRLDELNLSWCFLFTEKVTV--AV 281 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH---HHHhhhhHhhcCchHhhccchhhhH--HH
Confidence 455667777777777776655443 3668888888887765443222 2345677777888777654322110 11
Q ss_pred CCCCCCcceeecccc
Q 001897 808 DDLLPNLEELHLHDL 822 (998)
Q Consensus 808 ~~~l~~L~~L~L~~~ 822 (998)
...-++|..|+|+++
T Consensus 282 ~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 282 AHISETLTQLNLSGY 296 (419)
T ss_pred hhhchhhhhhhhhhh
Confidence 122356666777666
No 64
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.18 E-value=0.0002 Score=84.80 Aligned_cols=200 Identities=15% Similarity=0.047 Sum_probs=104.4
Q ss_pred cchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCC-CeEEEEEeC--C-CCCHHHHHHHH---
Q 001897 158 TTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRS-GMVIWATVS--K-ELNLRWVQAQI--- 230 (998)
Q Consensus 158 ~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f-~~~~wv~~s--~-~~~~~~~~~~i--- 230 (998)
.|....+..+.+.+.......+.|+|++|+||||+|+.+++..+.... ..| ...-|+.+. . ..+...+...+
T Consensus 157 iGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~-~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~ 235 (615)
T TIGR02903 157 VGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKH-TPFAEDAPFVEVDGTTLRWDPREVTNPLLGS 235 (615)
T ss_pred eeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccC-CcccCCCCeEEEechhccCCHHHHhHHhcCC
Confidence 344455556666665566678999999999999999999876432110 001 112234332 1 12222222211
Q ss_pred ------------HHHhcCCcc-----------------hhhhHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccC
Q 001897 231 ------------AERLNLDVK-----------------MEESMQRLGIRLHERLLRESNFLLILDDVWET--IDLDSLGV 279 (998)
Q Consensus 231 ------------~~~l~~~~~-----------------~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~l~~ 279 (998)
+...+.... ...-....+..+.+.+..+ ++.++-|+.|.. ..|+.+..
T Consensus 236 ~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~-~v~~~~~~~~~~~~~~~~~ik~ 314 (615)
T TIGR02903 236 VHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDK-RVEFSSSYYDPDDPNVPKYIKK 314 (615)
T ss_pred ccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhC-eEEeecceeccCCcccchhhhh
Confidence 111111000 0000122345566666554 788887766654 34666655
Q ss_pred CCCCCCCCcEEEE--ecCChHH-Hhhc-CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHH
Q 001897 280 PQPEDHGGSKIIL--TSRSLEV-CMAM-KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAII 355 (998)
Q Consensus 280 ~l~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 355 (998)
.+....+...|++ ||++... .... .....+.+.+++.+|.+.++.+.+...... --++..+.|.+.+..-+-|+.
T Consensus 315 ~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys~~gRraln 393 (615)
T TIGR02903 315 LFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYTIEGRKAVN 393 (615)
T ss_pred hcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCCCcHHHHHH
Confidence 5554555555555 5664321 1111 122467889999999999999887532211 113344445554444455554
Q ss_pred HHHHH
Q 001897 356 TMGTA 360 (998)
Q Consensus 356 ~~~~~ 360 (998)
.++..
T Consensus 394 ~L~~~ 398 (615)
T TIGR02903 394 ILADV 398 (615)
T ss_pred HHHHH
Confidence 44433
No 65
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.16 E-value=5.9e-05 Score=92.34 Aligned_cols=260 Identities=15% Similarity=0.177 Sum_probs=148.6
Q ss_pred cchHHHHHHHHHhhc---CCCceEEEEEeCCCChHHHHHHHHHHHhhhc---cccCCCCeEEEEEeCCCCC---HHHHHH
Q 001897 158 TTASKTLGKLMKLLD---CDEIRRIGIWGLGGIGKTTLVKNLNNILKRD---SSAHRSGMVIWATVSKELN---LRWVQA 228 (998)
Q Consensus 158 ~~~~~~~~~l~~~l~---~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~~~~~f~~~~wv~~s~~~~---~~~~~~ 228 (998)
.||+.+++.|...+. ...-.|+.+.|..|+|||+++++|...+..+ ++.+.|+ ....... ..+..+
T Consensus 3 ~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~-----q~~~~ipl~~lvq~~r 77 (849)
T COG3899 3 YGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFD-----QFERNIPLSPLVQAFR 77 (849)
T ss_pred CchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcc-----cccCCCchHHHHHHHH
Confidence 356667777777664 3566799999999999999999999887543 1222232 1111111 122333
Q ss_pred HHHHHh-------------------cCCcchh----------------------hh-----HHHHHHHHHHHHHcCCeEE
Q 001897 229 QIAERL-------------------NLDVKME----------------------ES-----MQRLGIRLHERLLRESNFL 262 (998)
Q Consensus 229 ~i~~~l-------------------~~~~~~~----------------------~~-----~~~~~~~l~~~l~~~~r~L 262 (998)
+++.++ +...... .. .......+.......++.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 333322 1110000 00 0011222333444556999
Q ss_pred EEEccc-ccccc-c---ccccCCCCC-C--CCCcEEEEecCCh--HHHhhcCCCeEEEccCCChHHHHHHHHHhhCCCCC
Q 001897 263 LILDDV-WETID-L---DSLGVPQPE-D--HGGSKIILTSRSL--EVCMAMKTDVEVRVDLLNDDEAWQLFSQNAGVAAS 332 (998)
Q Consensus 263 lVlDdv-~~~~~-~---~~l~~~l~~-~--~~gs~iivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 332 (998)
+|+||+ |-... + ..+.....- . .+..-.+.|.+.. .+.....+...+.+.||+..+...+.....+...
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~- 236 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK- 236 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc-
Confidence 999999 33211 1 111111110 0 0011123333332 2223334457899999999999999988886532
Q ss_pred CCCchHHHHHHHHHccCChHHHHHHHHHhcCC------CCHHHHHHHHHHHhhcCCCcccchhhhHHHHHhcccccchhh
Q 001897 333 KDPIKPFAQAIARECKGLPLAIITMGTAMRGK------TNVKLWKHALKEWQKSVPCIKGIENNVYNSLKWSYDALEGNS 406 (998)
Q Consensus 333 ~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~l 406 (998)
....+..+.|.++.+|+|+.+.-+-..+... .+...|..-...+. ..+..+++...+..-.+.||...
T Consensus 237 -~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-----~~~~~~~vv~~l~~rl~kL~~~t 310 (849)
T COG3899 237 -LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-----ILATTDAVVEFLAARLQKLPGTT 310 (849)
T ss_pred -cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-----CchhhHHHHHHHHHHHhcCCHHH
Confidence 2334678899999999999999888887653 22334444332221 11222336667888999999999
Q ss_pred HHHHhhhccCCCCCccCHHHHHHHH
Q 001897 407 KYCFLYCSLFPEDFSIEESELVRYW 431 (998)
Q Consensus 407 k~cfl~~a~fp~~~~i~~~~li~~w 431 (998)
+...-..|++-. .|+.+.|-..+
T Consensus 311 ~~Vl~~AA~iG~--~F~l~~La~l~ 333 (849)
T COG3899 311 REVLKAAACIGN--RFDLDTLAALA 333 (849)
T ss_pred HHHHHHHHHhCc--cCCHHHHHHHH
Confidence 999999999854 44455554433
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=0.0001 Score=85.66 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=105.3
Q ss_pred ccccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccc----------------cCCCCeEEEEEe
Q 001897 155 EHQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSS----------------AHRSGMVIWATV 217 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~----------------~~~f~~~~wv~~ 217 (998)
....|.+..++.|.+++..+++. .+.++|..|+||||+|+.+.+.+..... .+.|.-+++++.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 33445566677777888776644 5679999999999999999887642110 011112333333
Q ss_pred CCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecC
Q 001897 218 SKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSR 295 (998)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR 295 (998)
+....+.++ +++++ .....-..++.-++|||+++... .++.+...+-.-....++|+||+
T Consensus 96 as~rgVDdI-ReLIe-----------------~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 96 ASNRGVDEM-AALLE-----------------RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred cccccHHHH-HHHHH-----------------HHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 222222111 11111 11111112335588899998763 24444433322234666776666
Q ss_pred Ch-HHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh-HHHHHHH
Q 001897 296 SL-EVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP-LAIITMG 358 (998)
Q Consensus 296 ~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 358 (998)
+. .+.. ..+-...++++.++.++..+.+.+.+..+.. .--.+..+.|++.++|.. -|+..+-
T Consensus 158 d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 158 DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred ChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 53 3321 1223367999999999999999888743322 123456778999998855 4554433
No 67
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=5.7e-05 Score=78.38 Aligned_cols=162 Identities=13% Similarity=0.138 Sum_probs=97.1
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhh
Q 001897 163 TLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEE 242 (998)
Q Consensus 163 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 242 (998)
.+..+.++......+.+.|+|+.|+|||+|++.+++..... -..+.++++.....
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-----~~~v~y~~~~~~~~-------------------- 86 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-----GRAVGYVPLDKRAW-------------------- 86 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEEHHHHhh--------------------
Confidence 34444444444455789999999999999999999875421 23456666532100
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEEcccccc---ccccc-ccCCCCC-CCCC-cEEEEecCC---------hHHHhhcCCCe
Q 001897 243 SMQRLGIRLHERLLRESNFLLILDDVWET---IDLDS-LGVPQPE-DHGG-SKIILTSRS---------LEVCMAMKTDV 307 (998)
Q Consensus 243 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~~---~~~~~-l~~~l~~-~~~g-s~iivTtR~---------~~v~~~~~~~~ 307 (998)
... .+.+.+.+ --++++||+... ..|+. +...+.. ...| .++|+||+. .++..++.+..
T Consensus 87 ~~~----~~~~~~~~--~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~ 160 (235)
T PRK08084 87 FVP----EVLEGMEQ--LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQ 160 (235)
T ss_pred hhH----HHHHHhhh--CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCc
Confidence 000 11122211 248899999654 22321 1111110 1123 468999874 34455677788
Q ss_pred EEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 308 EVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 308 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
.++++++++++-.+++.+++.... -.--+++..-|++++.|-.-++..
T Consensus 161 ~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHH
Confidence 999999999999999988774322 223356777888888876544433
No 68
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=7.2e-05 Score=81.64 Aligned_cols=175 Identities=15% Similarity=0.131 Sum_probs=107.0
Q ss_pred chHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhcc-ccCCCCeEEEEEe-CCCCCHHHHHHHHHHHhc
Q 001897 159 TASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDS-SAHRSGMVIWATV-SKELNLRWVQAQIAERLN 235 (998)
Q Consensus 159 ~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~ 235 (998)
|.+..++.+...+..+++ ....++|+.|+||||+|+.++..+.... ...++|...|... +....+.++. ++.+.+.
T Consensus 8 g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~~~~~ 86 (313)
T PRK05564 8 GHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NIIEEVN 86 (313)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHHHHHh
Confidence 445566778888877665 4668999999999999999998764322 2356776666542 2333333322 2222221
Q ss_pred CCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCCCcEEEEecCChHHH-h-hcCCCeEEEc
Q 001897 236 LDVKMEESMQRLGIRLHERLLRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKIILTSRSLEVC-M-AMKTDVEVRV 311 (998)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~-~~~~~~~~~l 311 (998)
.. -..++ +-++|+|+++.. ..++.+...+..-..++.+|++|.+.+.. . ..+....+++
T Consensus 87 ~~----------------p~~~~-~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~ 149 (313)
T PRK05564 87 KK----------------PYEGD-KKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKL 149 (313)
T ss_pred cC----------------cccCC-ceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeC
Confidence 10 01133 556666766443 45666655555445678888877654321 1 1223468999
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 312 DLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 312 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
.++++++....+.+.... .-.+.+..++..++|.|..+..
T Consensus 150 ~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 150 NRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred CCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 999999998887665421 1134467889999998876543
No 69
>PRK09087 hypothetical protein; Validated
Probab=98.13 E-value=2.8e-05 Score=79.76 Aligned_cols=141 Identities=14% Similarity=0.031 Sum_probs=87.0
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+.+.|+|+.|+|||+|++.+++... ..+++.. .+...++ ..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~----------~~~i~~~------~~~~~~~---------------------~~ 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD----------ALLIHPN------EIGSDAA---------------------NA 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC----------CEEecHH------HcchHHH---------------------Hh
Confidence 346799999999999999998876521 1233221 1111111 11
Q ss_pred HHcCCeEEEEEccccccc-ccccccCCCC-CCCCCcEEEEecCC---------hHHHhhcCCCeEEEccCCChHHHHHHH
Q 001897 255 LLRESNFLLILDDVWETI-DLDSLGVPQP-EDHGGSKIILTSRS---------LEVCMAMKTDVEVRVDLLNDDEAWQLF 323 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~-~~~~l~~~l~-~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf 323 (998)
+. .-+|++||+.... +-+.+...+. -...|..||+|++. .++..++.....+++++++.++-.+++
T Consensus 86 ~~---~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 86 AA---EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hh---cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 11 1278889996431 1111111111 11336779998873 445556677889999999999999999
Q ss_pred HHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 324 SQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
.+++.... -.--+++..-|++++.|..-++..
T Consensus 163 ~~~~~~~~-~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 163 FKLFADRQ-LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHcC-CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 99885422 122356777888888876666543
No 70
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=2.1e-06 Score=67.84 Aligned_cols=55 Identities=33% Similarity=0.417 Sum_probs=22.0
Q ss_pred ccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCC
Q 001897 563 LRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSAT 617 (998)
Q Consensus 563 Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~ 617 (998)
|++|++++|.+..+|. .+..+++|++|++++|......| .+..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4444444444444442 33344444444444333222222 2344444444444443
No 71
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.10 E-value=0.0003 Score=73.02 Aligned_cols=135 Identities=18% Similarity=0.247 Sum_probs=86.9
Q ss_pred HHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHH
Q 001897 167 LMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQR 246 (998)
Q Consensus 167 l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 246 (998)
|.+++..+++..+.+||++|+||||||+.+.+.-+.. ...+|..|....-..-.++|.++-.
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~-------SyrfvelSAt~a~t~dvR~ife~aq----------- 214 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH-------SYRFVELSATNAKTNDVRDIFEQAQ----------- 214 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC-------ceEEEEEeccccchHHHHHHHHHHH-----------
Confidence 4455667889999999999999999999998753221 1456777665444444444443321
Q ss_pred HHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEE--ecCChHH---HhhcCCCeEEEccCCChHHH
Q 001897 247 LGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIIL--TSRSLEV---CMAMKTDVEVRVDLLNDDEA 319 (998)
Q Consensus 247 ~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~ 319 (998)
+ .....++|..|.+|.|.... +-+ ..+|.-.+|.-++| ||-+... +...+...++-+++|..++.
T Consensus 215 ---~--~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 215 ---N--EKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred ---H--HHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 1 11224569999999997652 222 23455566776665 5554322 12234456889999999999
Q ss_pred HHHHHHhh
Q 001897 320 WQLFSQNA 327 (998)
Q Consensus 320 ~~lf~~~~ 327 (998)
..++.+..
T Consensus 287 ~~iL~rai 294 (554)
T KOG2028|consen 287 VTILMRAI 294 (554)
T ss_pred HHHHHHHH
Confidence 99888744
No 72
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00023 Score=78.11 Aligned_cols=198 Identities=19% Similarity=0.190 Sum_probs=120.2
Q ss_pred chHHHHHHHHHhhc----CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001897 159 TASKTLGKLMKLLD----CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERL 234 (998)
Q Consensus 159 ~~~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 234 (998)
.|++++.++...+. .....-+.|+|..|+|||+.++.|...+..... ..+ +++|++-...+..++..+|++++
T Consensus 21 ~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~--~~~-~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 21 HREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA--NVE-VVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc--cCc-eEEEeeeeCCCHHHHHHHHHHHc
Confidence 45666666665553 344445999999999999999999998865422 122 78999999999999999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHc-CCeEEEEEcccccccccc--cccCCCCCC-CCCcEEE--EecCChHHHhhcC----
Q 001897 235 NLDVKMEESMQRLGIRLHERLLR-ESNFLLILDDVWETIDLD--SLGVPQPED-HGGSKII--LTSRSLEVCMAMK---- 304 (998)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~~~~--~l~~~l~~~-~~gs~ii--vTtR~~~v~~~~~---- 304 (998)
+..........+....+.+.+.. ++.+++|||+++....-. .+...+... ...++|+ ..+-+......+.
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~ 177 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVK 177 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhh
Confidence 74433334445555566666643 568999999998764321 111111111 1144443 3444433322211
Q ss_pred ---CCeEEEccCCChHHHHHHHHHhhCC----CCCCCCchHHHHHH-HHHccCChHHHHHHHH
Q 001897 305 ---TDVEVRVDLLNDDEAWQLFSQNAGV----AASKDPIKPFAQAI-ARECKGLPLAIITMGT 359 (998)
Q Consensus 305 ---~~~~~~l~~L~~~~~~~lf~~~~~~----~~~~~~~~~~~~~i-~~~c~glPlai~~~~~ 359 (998)
....+...|-+.+|-...+..++.. ....+..-+.+..+ +...|-.-.|+..+-.
T Consensus 178 s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 178 SSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 1234778888999999999888832 12223333333333 3444445555555433
No 73
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.09 E-value=4.5e-05 Score=84.77 Aligned_cols=196 Identities=15% Similarity=0.091 Sum_probs=102.9
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCC-eEEEEEeCCCCCH--HHHHH--HH
Q 001897 156 HQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSG-MVIWATVSKELNL--RWVQA--QI 230 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~-~~~wv~~s~~~~~--~~~~~--~i 230 (998)
...|....++.+..++..+..+.+.++|++|+||||+|+.+.+.+... .+. ..+.+++++..+. ..+.. ..
T Consensus 16 ~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD----PWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc----ccccceEEechhhhhhcchhhhhcCcch
Confidence 344566677778888777776778999999999999999998875422 111 1344444321100 00000 00
Q ss_pred HHHhcCCcchhhhHHHHHHHHHHHHH-----cCCeEEEEEcccccccc--cccccCCCCCCCCCcEEEEecCC-hHHHh-
Q 001897 231 AERLNLDVKMEESMQRLGIRLHERLL-----RESNFLLILDDVWETID--LDSLGVPQPEDHGGSKIILTSRS-LEVCM- 301 (998)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~r~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iivTtR~-~~v~~- 301 (998)
...++...............+.+... ...+-+||+||+..... ...+...+......+++|+||.. ..+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchh
Confidence 00000000000000111111111111 12345899999975521 22222222222334667777643 22222
Q ss_pred hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 302 AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
..+....+++.+++.++..+++.+.+...... --.+..+.+++.++|.+-.+..
T Consensus 172 L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 172 IRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 12233578899999999999988876432221 2345678889999887655543
No 74
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.09 E-value=7.3e-05 Score=77.69 Aligned_cols=199 Identities=17% Similarity=0.178 Sum_probs=123.0
Q ss_pred CCcccccchHHHHHHHHHhhcC---CCceEEEEEeCCCChHHHHHHHHHHHhhhccccC-CCCeEEEEEeCCCCCHHHHH
Q 001897 152 PSIEHQTTASKTLGKLMKLLDC---DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAH-RSGMVIWATVSKELNLRWVQ 227 (998)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~ 227 (998)
+..++.....+.++++-+++.. .+.+-+.|||.+|.|||++++++...+....... .--.++.|.+...++...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 4455555556667777666654 3566799999999999999999988753322111 11247788888999999999
Q ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc---------cccccCCCCCCCCCcEEEEecCC--
Q 001897 228 AQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID---------LDSLGVPQPEDHGGSKIILTSRS-- 296 (998)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~---------~~~l~~~l~~~~~gs~iivTtR~-- 296 (998)
..|+.+++.+.....+...........+..-+--+||+|.+.+... ++.+ ..+...-.=+-|.|-|++
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~ 192 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAY 192 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHH
Confidence 9999999998876666655555555555555567999999977521 1111 111111122334454542
Q ss_pred ------hHHHhhcCCCeEEEccCCCh-HHHHHHHHHhhC----CCCCCCCchHHHHHHHHHccCChHHH
Q 001897 297 ------LEVCMAMKTDVEVRVDLLND-DEAWQLFSQNAG----VAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 297 ------~~v~~~~~~~~~~~l~~L~~-~~~~~lf~~~~~----~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
.+.+..+ .++.+..-.. ++...|+..... .....-...+++..|...++|+.--+
T Consensus 193 ~al~~D~QLa~RF---~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 193 RALRTDPQLASRF---EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHhccCHHHHhcc---CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 3333322 3455655554 344455433321 12223345788999999999976444
No 75
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=6.7e-05 Score=88.91 Aligned_cols=184 Identities=15% Similarity=0.132 Sum_probs=104.9
Q ss_pred ccccchHHHHHHHHHhhcCCCceE-EEEEeCCCChHHHHHHHHHHHhhhcccc----------------CCCCeEEEEEe
Q 001897 155 EHQTTASKTLGKLMKLLDCDEIRR-IGIWGLGGIGKTTLVKNLNNILKRDSSA----------------HRSGMVIWATV 217 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~~~----------------~~f~~~~wv~~ 217 (998)
....|.+..+..|.+++..+++.- +.++|+.|+||||+|+.+++.+...... ..|.-++++..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 334455566667777777777665 5899999999999999999876432100 01111233322
Q ss_pred CCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCCCcEEEE-ec
Q 001897 218 SKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKIIL-TS 294 (998)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-Tt 294 (998)
+....+..+ ++|. ..+...-..+++-++|||++... ...+.+...+-.-....++|+ ||
T Consensus 96 as~~kVDdI-ReLi-----------------e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 96 ASRTKVDDT-RELL-----------------DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred ccccCHHHH-HHHH-----------------HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 211111111 2222 12221112345779999999776 233443333322223445554 44
Q ss_pred CChHHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 295 RSLEVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 295 R~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
....+.. .......|++.+++.++..+++.+.+.... ...-.+....|++.++|.|--+..+
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4444432 122346899999999999999988774322 1223456788999999988654444
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.8e-07 Score=91.40 Aligned_cols=184 Identities=13% Similarity=0.049 Sum_probs=121.4
Q ss_pred cccEEEEecccCchhhHHH---hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCC
Q 001897 734 DERRVTISGIDLSGEWIGW---LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDL 810 (998)
Q Consensus 734 ~L~~L~l~~~~l~~~~~~~---~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 810 (998)
.++.|+++...++...... -+.+|+.|.|.+..- +.-+...+....+|+.|+|++|.+.+.. +......+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-----dD~I~~~iAkN~~L~~lnlsm~sG~t~n--~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-----DDPIVNTIAKNSNLVRLNLSMCSGFTEN--ALQLLLSS 258 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-----CcHHHHHHhccccceeeccccccccchh--HHHHHHHh
Confidence 4566777776666444333 367888888877432 2222334567789999999999875332 11223456
Q ss_pred CCCcceeecccccccccccc-ccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhccccc
Q 001897 811 LPNLEELHLHDLAYLGNISG-LVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSE 889 (998)
Q Consensus 811 l~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~ 889 (998)
+..|..|+|++|......-. .+.+ --++|..|++++|.+--.......+...+|+|.+|++++|..++.-...
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~h---ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~--- 332 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAH---ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ--- 332 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhh---hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH---
Confidence 88999999999965444311 1112 2468899999998754332233345678999999999999887652111
Q ss_pred cCCCCCCCCCccceeecCCCcccc-ccccCCCCCCCccEEEEecCC
Q 001897 890 LNFTPETVVPNLRNLELKNLPKLR-TICRQKESWQCLEQVKVIKCN 934 (998)
Q Consensus 890 ~~~~~~~~~p~L~~L~l~~~~~L~-~i~~~~~~l~~L~~L~i~~C~ 934 (998)
....|+.|++|.++.|-.+- ..-.++.+.|+|.+|++.||-
T Consensus 333 ----~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 333 ----EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ----HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 11379999999999996543 112246789999999999984
No 77
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=1.7e-05 Score=85.77 Aligned_cols=93 Identities=12% Similarity=0.144 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC--CCHHHHHHHHH-----HHhcCCcchhhhH-HH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE--LNLRWVQAQIA-----ERLNLDVKMEESM-QR 246 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~-----~~l~~~~~~~~~~-~~ 246 (998)
.-..++|+|++|+|||||++.+++.+.. ++|+..+||.+.+. .++.++++.|. ..++.+....... ..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~----nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~ 242 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR----NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEM 242 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc----cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHH
Confidence 4467899999999999999999997642 47999999999866 78999999994 3333222111111 12
Q ss_pred HHHHHHHHHHcCCeEEEEEcccccc
Q 001897 247 LGIRLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 247 ~~~~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
...........+++++|++|++...
T Consensus 243 v~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 243 VIEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHHcCCCeEEEEEChhHH
Confidence 2223333334567999999999754
No 78
>PLN03025 replication factor C subunit; Provisional
Probab=98.05 E-value=6.2e-05 Score=82.34 Aligned_cols=177 Identities=15% Similarity=0.084 Sum_probs=98.2
Q ss_pred cchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCC-eEEEEEeCCCCCHHHHHHHHHHHhcC
Q 001897 158 TTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSG-MVIWATVSKELNLRWVQAQIAERLNL 236 (998)
Q Consensus 158 ~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (998)
.+..+.+..|..+...++.+.+.++|++|+||||+|+.+++.+... .|. .++-+..++..+...+ +.++..+..
T Consensus 16 ~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~----~~~~~~~eln~sd~~~~~~v-r~~i~~~~~ 90 (319)
T PLN03025 16 VGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP----NYKEAVLELNASDDRGIDVV-RNKIKMFAQ 90 (319)
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc----cCccceeeecccccccHHHH-HHHHHHHHh
Confidence 3444556666666667777778899999999999999999875321 121 1222333333332222 221111100
Q ss_pred CcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc--cccccCCCCCCCCCcEEEEecCC-hHHHh-hcCCCeEEEcc
Q 001897 237 DVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID--LDSLGVPQPEDHGGSKIILTSRS-LEVCM-AMKTDVEVRVD 312 (998)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iivTtR~-~~v~~-~~~~~~~~~l~ 312 (998)
.. .....++.-++|||+++.... ...+...+-.....+++++++.. ..+.. ..+....+++.
T Consensus 91 ~~--------------~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 91 KK--------------VTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred cc--------------ccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 00 000112366899999987632 22222222222345667766643 22211 11122578999
Q ss_pred CCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 313 LLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 313 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
++++++....+.+.+...... --.+....|++.++|-.-.+
T Consensus 157 ~l~~~~l~~~L~~i~~~egi~-i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAEKVP-YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 999999999988887432221 12456788999998866443
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=1.7e-05 Score=90.88 Aligned_cols=179 Identities=15% Similarity=0.090 Sum_probs=100.3
Q ss_pred ccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccccC---------------CCCeEEEEEeCCC
Q 001897 157 QTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSAH---------------RSGMVIWATVSKE 220 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~---------------~f~~~~wv~~s~~ 220 (998)
..|.+..++.|..++..+.+. .+.++|++|+||||+|+.+++.+....... ...-+.++..+..
T Consensus 16 vvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~ 95 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASN 95 (504)
T ss_pred hcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccccc
Confidence 334455566676777666654 569999999999999999988764211000 0001222222211
Q ss_pred CCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEec-CCh
Q 001897 221 LNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTS-RSL 297 (998)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt-R~~ 297 (998)
..+.. ..+....+...-..+++-++|+|+++... .++.+...+........+|++| +..
T Consensus 96 ~~vd~------------------iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 96 NSVED------------------VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred CCHHH------------------HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 11111 11111111111112346789999997652 3444444443333344445444 444
Q ss_pred HHHhhc-CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 298 EVCMAM-KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 298 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
.+.... +....+++.++++++..+.+.+.+...... .-.+....|++.++|.+--+
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~-i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE-AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 442222 234579999999999999999887432221 13456788999999988554
No 80
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.04 E-value=7.5e-07 Score=91.76 Aligned_cols=144 Identities=17% Similarity=0.117 Sum_probs=66.9
Q ss_pred cCCcEEeCCCCcccccccc----cccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCC
Q 001897 630 SNLRRLNLSRTHYLKKIQA----GIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQG 705 (998)
Q Consensus 630 ~~L~~L~l~~~~~l~~~p~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 705 (998)
++|+.+...+|. +...+. ..+...+.|+.+.+..|.+.. .+.......+..+++|+.|++..|.++...
T Consensus 157 ~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~------eG~~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 157 PKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRP------EGVTALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred cceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccC------chhHHHHHHHHhCCcceeeecccchhhhHH
Confidence 455555555554 333222 123444556666655554420 011123345556666666666544443321
Q ss_pred CCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHH-------HhhhcCceeecccccCchhhhhhhhhc
Q 001897 706 TEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIG-------WLLTNASSLILNNCWGLDQMLETLVID 778 (998)
Q Consensus 706 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-------~~~~~L~~L~L~~c~~l~~~~~~~~~~ 778 (998)
...+. ..++..++|+.|++++|.+...... ...++|+.|.+.+|.-....... ...
T Consensus 230 s~~La----------------kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~-la~ 292 (382)
T KOG1909|consen 230 SVALA----------------KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA-LAA 292 (382)
T ss_pred HHHHH----------------HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH-HHH
Confidence 11111 1122233445555555544432211 12566777777665432221111 112
Q ss_pred ccccCCCCCEEEEeCCCCc
Q 001897 779 SVGAFASLKSLTIAGSRSS 797 (998)
Q Consensus 779 ~l~~l~~L~~L~L~~~~~~ 797 (998)
++...|.|.+|.|++|...
T Consensus 293 ~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhcchhhHHhcCCccccc
Confidence 3345788999999999873
No 81
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.04 E-value=6.7e-06 Score=87.62 Aligned_cols=236 Identities=25% Similarity=0.283 Sum_probs=151.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+-+.++|.|||||||++-.+.. .+. ..-+.+.++......+...+.-.+...++.+....++.. ..+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~----~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~---~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AAS----EYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAV---DTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhh----hcccceeeeeccccCchhHhHHHHHhhcccccccchHHH---HHHHHH
Confidence 458899999999999999999987 332 223446677777777777777777777877665432221 122233
Q ss_pred HHcCCeEEEEEcccccccc-cccccCCCCCCCCCcEEEEecCChHHHhhcCCCeEEEccCCCh-HHHHHHHHHhhCCCC-
Q 001897 255 LLRESNFLLILDDVWETID-LDSLGVPQPEDHGGSKIILTSRSLEVCMAMKTDVEVRVDLLND-DEAWQLFSQNAGVAA- 331 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~-~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~-~~~~~lf~~~~~~~~- 331 (998)
... +|.++|+||..+..+ -..+...+-.+.+.-.|+.|+|... .+.......+..|+. +++.++|...+....
T Consensus 85 ~~~-rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 85 IGD-RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred Hhh-hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 333 499999999876532 1112222223344556888888642 233455677888876 479999988873221
Q ss_pred ---CCCCchHHHHHHHHHccCChHHHHHHHHHhcCCCCHHH---HHHHHHHHhhcCCCcccchhhhHHHHHhcccccchh
Q 001897 332 ---SKDPIKPFAQAIARECKGLPLAIITMGTAMRGKTNVKL---WKHALKEWQKSVPCIKGIENNVYNSLKWSYDALEGN 405 (998)
Q Consensus 332 ---~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~---w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 405 (998)
-...-...+.+|.++..|.|++|...++..+.-...+. ..+-...+........--.....+.+.+||.-|..-
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 12334567889999999999999999998876543221 111111122111001111345778999999999998
Q ss_pred hHHHHhhhccCCCCCcc
Q 001897 406 SKYCFLYCSLFPEDFSI 422 (998)
Q Consensus 406 lk~cfl~~a~fp~~~~i 422 (998)
.+--|--++.|.-.+.-
T Consensus 241 e~~~~~rLa~~~g~f~~ 257 (414)
T COG3903 241 ERALFGRLAVFVGGFDL 257 (414)
T ss_pred HHHHhcchhhhhhhhcc
Confidence 88889888888766544
No 82
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00016 Score=80.35 Aligned_cols=180 Identities=13% Similarity=0.116 Sum_probs=100.1
Q ss_pred ccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhcccc----------------CCCCeEEEEEeCC
Q 001897 157 QTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSA----------------HRSGMVIWATVSK 219 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~----------------~~f~~~~wv~~s~ 219 (998)
..|.+..++.+...+..+++ ..+.++|+.|+||||+|+.+++.+...... +.+.-.+++..+.
T Consensus 18 iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~ 97 (363)
T PRK14961 18 IIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS 97 (363)
T ss_pred ccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc
Confidence 34555666667777766654 467899999999999999998876421100 0011112222111
Q ss_pred CCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCC-
Q 001897 220 ELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRS- 296 (998)
Q Consensus 220 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~- 296 (998)
...+.+ .+++++. +...-..+++-++|+|+++... .++.+...+-......++|++|.+
T Consensus 98 ~~~v~~-ir~i~~~-----------------~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 98 RTKVEE-MREILDN-----------------IYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred cCCHHH-HHHHHHH-----------------HhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 111111 1111111 1100012335699999998764 344444333333345566666543
Q ss_pred hHHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHH
Q 001897 297 LEVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAII 355 (998)
Q Consensus 297 ~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 355 (998)
..+... .+....+++.+++.++..+.+.+.+..... .--++.+..|++.++|.|-.+.
T Consensus 160 ~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 160 EKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 333222 223368999999999999888877633221 1224567789999999886443
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.00 E-value=8.3e-07 Score=101.06 Aligned_cols=106 Identities=30% Similarity=0.399 Sum_probs=56.2
Q ss_pred cCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeC
Q 001897 558 DGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNL 637 (998)
Q Consensus 558 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 637 (998)
..++.|..|++.+|.|..+...+..+++|++|++++|. ++.+..+..+..|+.|++++|.|..++ .+..+.+|+.+++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 44555666666666655554445556666666666543 444444555555666666666555442 2333555666666
Q ss_pred CCCcccccccc-cccCCCCCccEEEcccCcc
Q 001897 638 SRTHYLKKIQA-GIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 638 ~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~ 667 (998)
++|. +..+.. . ...+.+|+.+.+.+|.+
T Consensus 170 ~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 170 SYNR-IVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred Ccch-hhhhhhhh-hhhccchHHHhccCCch
Confidence 6555 333332 1 24555555555555543
No 84
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.98 E-value=0.00013 Score=80.31 Aligned_cols=176 Identities=14% Similarity=0.081 Sum_probs=100.4
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEe--CCCCCHHHHHHHHHHH
Q 001897 156 HQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATV--SKELNLRWVQAQIAER 233 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~ 233 (998)
...+.++.++.+..++.....+.+.|+|.+|+||||+|+.+++..... .+.. .++.+ +.......+...+. .
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~----~~~~-~~i~~~~~~~~~~~~~~~~i~-~ 91 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE----DWRE-NFLELNASDERGIDVIRNKIK-E 91 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC----cccc-ceEEeccccccchHHHHHHHH-H
Confidence 344666777788888877777778999999999999999999875422 1111 12222 22222221111111 1
Q ss_pred hcCCcchhhhHHHHHHHHHHH--HHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCC-hHHHh-hcCCCe
Q 001897 234 LNLDVKMEESMQRLGIRLHER--LLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRS-LEVCM-AMKTDV 307 (998)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~--l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~v~~-~~~~~~ 307 (998)
+ ... .....+-++++|+++... ....+...+......+++|+++.. ..+.. ......
T Consensus 92 ~-----------------~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 92 F-----------------ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred H-----------------HhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 1 000 011235689999986552 222332222222334567766642 22211 111234
Q ss_pred EEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHH
Q 001897 308 EVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAII 355 (998)
Q Consensus 308 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 355 (998)
.+++.++++++....+.+.+..... .--++....+++.++|.+--+.
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 6899999999998888887743222 1234567889999999876543
No 85
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00022 Score=81.53 Aligned_cols=180 Identities=14% Similarity=0.083 Sum_probs=102.2
Q ss_pred cccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhcccc-------CCC-------------CeEEE
Q 001897 156 HQTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSA-------HRS-------------GMVIW 214 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-------~~f-------------~~~~w 214 (998)
...|.+..+..+...+..+++ ..+.++|+.|+||||+|+.+++.+...... ..+ .-++.
T Consensus 22 dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~e 101 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIE 101 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEE
Confidence 334555566666666665554 578899999999999999999876432100 000 01122
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCCCcEEE-
Q 001897 215 ATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKII- 291 (998)
Q Consensus 215 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii- 291 (998)
++......+.++ .+........-..+++-++|+|+++.. ..++.+...+......+.+|
T Consensus 102 idaas~~~vd~I------------------r~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 102 IDAASKTSVDDI------------------RRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred eeccCCCCHHHH------------------HHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEE
Confidence 222222222222 111111111111234678999999875 23555544443333445554
Q ss_pred EecCChHHHhhc-CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 292 LTSRSLEVCMAM-KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 292 vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
+||+...+.... +....+++.+++.++....+.+.+...... --.+....|++.++|.+--+
T Consensus 164 aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~-ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 164 ATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK-TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 455555554322 334679999999999999999888533221 12345677999999876444
No 86
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.94 E-value=7.4e-05 Score=76.37 Aligned_cols=159 Identities=18% Similarity=0.223 Sum_probs=92.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
....+.|+|..|+|||.|.+++++.+.... .-..+++++ ..+....++..+... .. ..+...
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~---~~~~v~y~~------~~~f~~~~~~~~~~~-----~~----~~~~~~ 94 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQH---PGKRVVYLS------AEEFIREFADALRDG-----EI----EEFKDR 94 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHC---TTS-EEEEE------HHHHHHHHHHHHHTT-----SH----HHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcc---ccccceeec------HHHHHHHHHHHHHcc-----cc----hhhhhh
Confidence 345689999999999999999999875321 112355664 445566665554321 11 223344
Q ss_pred HHcCCeEEEEEcccccccc---ccc-ccCCCC-CCCCCcEEEEecCC---------hHHHhhcCCCeEEEccCCChHHHH
Q 001897 255 LLRESNFLLILDDVWETID---LDS-LGVPQP-EDHGGSKIILTSRS---------LEVCMAMKTDVEVRVDLLNDDEAW 320 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~---~~~-l~~~l~-~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~ 320 (998)
+. .-=+|+|||++.... |.. +...+. ....|.+||+|++. .++..++..+..+++++.+.++..
T Consensus 95 ~~--~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 95 LR--SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRR 172 (219)
T ss_dssp HC--TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHH
T ss_pred hh--cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHH
Confidence 43 255899999976522 211 111110 01346789999953 344556677889999999999999
Q ss_pred HHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 321 QLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 321 ~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
+++.+++....-. --++++.-|++++.+..-.+
T Consensus 173 ~il~~~a~~~~~~-l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 173 RILQKKAKERGIE-LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHHHTT---S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHhCCC-CcHHHHHHHHHhhcCCHHHH
Confidence 9999988432221 22456666777666544333
No 87
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.94 E-value=0.00035 Score=69.25 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=84.5
Q ss_pred cccccchHHHHHH---HHHhhc--CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHH
Q 001897 154 IEHQTTASKTLGK---LMKLLD--CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQA 228 (998)
Q Consensus 154 ~~~~~~~~~~~~~---l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 228 (998)
+..+.|.+..++. +++... .+.+.-+-+||++|+||||||.-+++..... | .+.+........++ .
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~-----~---~~~sg~~i~k~~dl-~ 93 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN-----F---KITSGPAIEKAGDL-A 93 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-------E---EEEECCC--SCHHH-H
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC-----e---EeccchhhhhHHHH-H
Confidence 3444444444443 333332 3457789999999999999999999875321 2 12222111111111 1
Q ss_pred HHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc---------cccccCC-CCCCCCC-----------
Q 001897 229 QIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID---------LDSLGVP-QPEDHGG----------- 287 (998)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~---------~~~l~~~-l~~~~~g----------- 287 (998)
.++.. +. ++-+|.+|.+..... .++.... .-..+++
T Consensus 94 ~il~~---------------------l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 94 AILTN---------------------LK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp HHHHT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred HHHHh---------------------cC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 11111 11 244566677654310 1111100 0011111
Q ss_pred cEEEEecCChHHHhhcCC--CeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHH
Q 001897 288 SKIILTSRSLEVCMAMKT--DVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTA 360 (998)
Q Consensus 288 s~iivTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 360 (998)
+-|=-|||...+..-... ....+++..+.+|-.++..+.+..-.. +-.++.+.+|++++.|-|--..-+-..
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 234468887555433322 345689999999999999888743222 223567899999999999765444333
No 88
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.94 E-value=0.00021 Score=71.66 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=91.6
Q ss_pred HHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhcccc-----------------CCCCeEEEEEeCCCCCHHHHH
Q 001897 166 KLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSA-----------------HRSGMVIWATVSKELNLRWVQ 227 (998)
Q Consensus 166 ~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-----------------~~f~~~~wv~~s~~~~~~~~~ 227 (998)
.+.+.+..+++ ..+.++|+.|+||||+|+.+...+...... .+.|..+...........++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i- 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV- 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH-
Confidence 35555656665 578999999999999999998876432000 12222221111111122111
Q ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCCh-HHHhh-c
Q 001897 228 AQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRSL-EVCMA-M 303 (998)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~ 303 (998)
+++++.+. ..-..+.+-++|+||++... ..+.+...+......+.+|++|++. .+... .
T Consensus 82 ~~i~~~~~-----------------~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 82 RELVEFLS-----------------RTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHc-----------------cCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 11222211 10011346789999987652 2344443333333355566666543 33221 1
Q ss_pred CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChH
Q 001897 304 KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPL 352 (998)
Q Consensus 304 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 352 (998)
.....+++.+++.++..+.+.+. + -.++.+..|++.++|.|.
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~-g------i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ-G------ISEEAAELLLALAGGSPG 186 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc-C------CCHHHHHHHHHHcCCCcc
Confidence 23468999999999998888776 2 124568899999999875
No 89
>PRK05642 DNA replication initiation factor; Validated
Probab=97.93 E-value=0.00031 Score=72.84 Aligned_cols=149 Identities=15% Similarity=0.201 Sum_probs=89.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
...+.|+|..|+|||.|++.+++.+... -..++|++..+ +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-----~~~v~y~~~~~------~~~~------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-----GEPAVYLPLAE------LLDR------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-----CCcEEEeeHHH------HHhh------------------hHHHHHhh
Confidence 3678999999999999999998875421 23466776532 1111 01222333
Q ss_pred HcCCeEEEEEcccccc---ccccc-ccCCCC-CCCCCcEEEEecCCh---------HHHhhcCCCeEEEccCCChHHHHH
Q 001897 256 LRESNFLLILDDVWET---IDLDS-LGVPQP-EDHGGSKIILTSRSL---------EVCMAMKTDVEVRVDLLNDDEAWQ 321 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~---~~~~~-l~~~l~-~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 321 (998)
.+- =++|+||+... ..|.. +...+. -...|..||+|++.. ++..++.....+++++++.++-.+
T Consensus 96 ~~~--d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 96 EQY--ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLR 173 (234)
T ss_pred hhC--CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHH
Confidence 322 26889999643 23322 211111 113467789988742 223344556789999999999999
Q ss_pred HHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 322 LFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 322 lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
++.+++.... -.--+++..-|++++.|-.-.+..
T Consensus 174 il~~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 174 ALQLRASRRG-LHLTDEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHH
Confidence 9987663321 122256777788888776544433
No 90
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00012 Score=83.99 Aligned_cols=183 Identities=13% Similarity=0.091 Sum_probs=104.1
Q ss_pred cccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhcccc---------------------CCCCeEE
Q 001897 156 HQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSA---------------------HRSGMVI 213 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~---------------------~~f~~~~ 213 (998)
...|.+..+..|.+++..+++. .+.++|..|+||||+|+.+.+.+...... +.|.-++
T Consensus 17 dVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDvi 96 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYI 96 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcce
Confidence 3445556677777888777655 56899999999999999998876431100 0111122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcE-E
Q 001897 214 WATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSK-I 290 (998)
Q Consensus 214 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~-i 290 (998)
+++.+...++.+ ..++.+.+...-..++.-++|||+++... .++.+...+-.-..+.+ |
T Consensus 97 EIdAas~~gVDd------------------IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FI 158 (700)
T PRK12323 97 EMDAASNRGVDE------------------MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFI 158 (700)
T ss_pred EecccccCCHHH------------------HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEE
Confidence 332222212211 11111121111123346689999998762 34444433322223444 5
Q ss_pred EEecCChHHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 291 ILTSRSLEVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 291 ivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
++||....+... .+-...++++.++.++..+.+.+.+...... ...+..+.|++.++|.|.....+
T Consensus 159 LaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~-~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 159 LATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA-HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred EEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 556655555322 2223578999999999999888876432221 22345678999999988655443
No 91
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00025 Score=81.51 Aligned_cols=184 Identities=14% Similarity=0.110 Sum_probs=102.8
Q ss_pred cccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccc----------------cCCCCeEEEEEeC
Q 001897 156 HQTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSS----------------AHRSGMVIWATVS 218 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----------------~~~f~~~~wv~~s 218 (998)
...|.+..+..+...+..+++ ..+.++|+.|+||||+|+.+++.+..... .+.|.-.+++...
T Consensus 17 diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa 96 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA 96 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc
Confidence 334555666677777776655 45789999999999999999886542110 0112223333332
Q ss_pred CCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEE-EecC
Q 001897 219 KELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKII-LTSR 295 (998)
Q Consensus 219 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ii-vTtR 295 (998)
....+.++ ++| ...+...-..+++-++|+|+++... ..+.+...+-.....+.+| +||.
T Consensus 97 s~~gvd~i-r~i-----------------i~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd 158 (546)
T PRK14957 97 SRTGVEET-KEI-----------------LDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTD 158 (546)
T ss_pred cccCHHHH-HHH-----------------HHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECC
Confidence 22222221 111 1112111122346799999997652 2344433333222344444 5655
Q ss_pred ChHHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChH-HHHHHH
Q 001897 296 SLEVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPL-AIITMG 358 (998)
Q Consensus 296 ~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 358 (998)
...+... .+....+++.+++.++....+.+.+.... ...-+.....|++.++|-+- |+..+-
T Consensus 159 ~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 159 YHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred hhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444322 23346899999999998888877663322 12234456788999999653 444443
No 92
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00023 Score=81.95 Aligned_cols=182 Identities=13% Similarity=0.079 Sum_probs=102.2
Q ss_pred cccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccc----------------cCCCCeEEEEEeC
Q 001897 156 HQTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSS----------------AHRSGMVIWATVS 218 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----------------~~~f~~~~wv~~s 218 (998)
...|.+.....|..++..+++ ..+.++|+.|+||||+|+.+++.+..... .+.|--++.++.+
T Consensus 16 dVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAA 95 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAA 95 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccc
Confidence 344555666777777776664 57799999999999999999887532100 0111112223322
Q ss_pred CCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCC
Q 001897 219 KELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRS 296 (998)
Q Consensus 219 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~ 296 (998)
....+.++ ..........-..+++-++|+|+++... ..+.+...+-....+.++|++|.+
T Consensus 96 s~~~VddI------------------Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 96 SRTKVEDT------------------RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred ccCCHHHH------------------HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 22222111 1111111111112346689999998652 333333333222235566666654
Q ss_pred -hHHH-hhcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 297 -LEVC-MAMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 297 -~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
..+. ...+....+++++++.++..+.+.+.+..... .--.+....|++.++|-+-.+..
T Consensus 158 ~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI-~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 158 PQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI-AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred hHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3232 12233468999999999999988887743222 22245567899999997754433
No 93
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=3e-05 Score=84.33 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=19.6
Q ss_pred CccceeecCCCccccccccCCCCCCCccEEEEecC
Q 001897 899 PNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKC 933 (998)
Q Consensus 899 p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C 933 (998)
++|++|.+.+|..+. +|..+. .+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 468888888777553 222211 47777777664
No 94
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00013 Score=81.42 Aligned_cols=192 Identities=13% Similarity=0.078 Sum_probs=102.5
Q ss_pred cccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001897 156 HQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERL 234 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 234 (998)
...|.+..+..|..++..+++. .+.++|+.|+||||+|+.+++.+...... .+ ..+........+...+...+
T Consensus 19 dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~-~~-----~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPI-GN-----EPCNECTSCLEITKGISSDV 92 (484)
T ss_pred HHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCccccc-Cc-----cccCCCcHHHHHHccCCccc
Confidence 3445556666777777777764 58999999999999999998875422100 00 01111111111111110000
Q ss_pred ---cCCcc-hhhhHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCCCcEE-EEecCChHHHhh-cCCC
Q 001897 235 ---NLDVK-MEESMQRLGIRLHERLLRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKI-ILTSRSLEVCMA-MKTD 306 (998)
Q Consensus 235 ---~~~~~-~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i-ivTtR~~~v~~~-~~~~ 306 (998)
..... ..++..++...+...-..++.-++|+|+++.. ..++.+...+-.......+ +.||....+... .+..
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 00000 01112222222222222344668999999876 3355554333222223443 455554444322 2233
Q ss_pred eEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 307 VEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 307 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
..|.+.+++.++..+.+.+.+..... .--.+....|++.++|.+--.
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChHHHH
Confidence 57999999999998888887643221 223456788999999987443
No 95
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.00014 Score=82.67 Aligned_cols=166 Identities=13% Similarity=0.106 Sum_probs=103.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
..-+.|+|..|+|||+|++++.+.+... ..-..+++++ ..++...+...++... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~---~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESN---FSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHh---CCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHh
Confidence 3568999999999999999999876431 1112344443 3456666666654210 1122333333
Q ss_pred HcCCeEEEEEccccccc---cc-ccccCCCC-CCCCCcEEEEecCC---------hHHHhhcCCCeEEEccCCChHHHHH
Q 001897 256 LRESNFLLILDDVWETI---DL-DSLGVPQP-EDHGGSKIILTSRS---------LEVCMAMKTDVEVRVDLLNDDEAWQ 321 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~~---~~-~~l~~~l~-~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~ 321 (998)
. ..-+||+||+.... .+ +.+...+. ....|..||+|+.. ..+..++..+-.+.+++++.++-.+
T Consensus 205 ~--~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 205 C--QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred c--cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 2 24589999996542 11 22211111 01234568888753 3344556677889999999999999
Q ss_pred HHHHhhCCCCC-CCCchHHHHHHHHHccCChHHHHHHHH
Q 001897 322 LFSQNAGVAAS-KDPIKPFAQAIARECKGLPLAIITMGT 359 (998)
Q Consensus 322 lf~~~~~~~~~-~~~~~~~~~~i~~~c~glPlai~~~~~ 359 (998)
++.+++..... ..--+++..-|++.++|.|-.+..+..
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 99998843221 123357788999999999877755543
No 96
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.89 E-value=0.00013 Score=87.10 Aligned_cols=167 Identities=19% Similarity=0.187 Sum_probs=92.2
Q ss_pred cccchHHHH---HHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001897 156 HQTTASKTL---GKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 156 ~~~~~~~~~---~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 232 (998)
.+.|.+..+ ..+...+..++...+.++|++|+||||+|+.+++.... .| +.++.+. ..+.++
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~-----~f---~~lna~~-~~i~di------ 93 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA-----HF---SSLNAVL-AGVKDL------ 93 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC-----cc---eeehhhh-hhhHHH------
Confidence 344444444 34556666777778899999999999999999986431 22 1111110 011110
Q ss_pred HhcCCcchhhhHHHHHHHHHHHHH-cCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEe--cCCh--HHHhh-cC
Q 001897 233 RLNLDVKMEESMQRLGIRLHERLL-RESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILT--SRSL--EVCMA-MK 304 (998)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivT--tR~~--~v~~~-~~ 304 (998)
........+.+. .+++.++||||++... ..+.+...+ ..|+.++|+ |.+. .+... .+
T Consensus 94 ------------r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 94 ------------RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred ------------HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 111111111111 1347799999997652 333333222 235555553 3332 12221 12
Q ss_pred CCeEEEccCCChHHHHHHHHHhhCC------CCCCCCchHHHHHHHHHccCChH
Q 001897 305 TDVEVRVDLLNDDEAWQLFSQNAGV------AASKDPIKPFAQAIARECKGLPL 352 (998)
Q Consensus 305 ~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~~~~~i~~~c~glPl 352 (998)
....+.+++++.++...++.+.+.. .....--++....|++.+.|..-
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 2457899999999999999887641 11112234566788888888643
No 97
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.89 E-value=0.00019 Score=80.07 Aligned_cols=170 Identities=14% Similarity=0.161 Sum_probs=92.6
Q ss_pred cccchHHHHHHHHHhhc----C---------CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC
Q 001897 156 HQTTASKTLGKLMKLLD----C---------DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN 222 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 222 (998)
+..|.++.++++.+.+. . ...+-|.++|++|+|||++|+.+++.... .| +.+.
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~-----~~-----~~v~---- 188 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-----TF-----IRVV---- 188 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC-----CE-----Eecc----
Confidence 33455566666555442 1 22456899999999999999999986432 12 2221
Q ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc----------------cccccCCCC--CC
Q 001897 223 LRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID----------------LDSLGVPQP--ED 284 (998)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 284 (998)
...+.... .+ ........+.+........+|+||+++.... +..+...+. ..
T Consensus 189 ~~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 189 GSELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred hHHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 11111111 11 0111222233333334478999999875410 111111111 11
Q ss_pred CCCcEEEEecCChHH-----HhhcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 285 HGGSKIILTSRSLEV-----CMAMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 285 ~~gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
..+.+||.||..... .....-...+++...+.++..++|..++.......+. ....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 236678888875332 1111234678999999999999999887543322221 1456777777754
No 98
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00028 Score=77.23 Aligned_cols=194 Identities=16% Similarity=0.079 Sum_probs=105.2
Q ss_pred ccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001897 157 QTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (998)
..|-++....+...+..++.. .+.|+|+.|+||||+|..+...+-.... ..+... .....+.-....+.|...-+
T Consensus 25 l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~-~~~~~~---~~~~~~~~c~~c~~i~~~~h 100 (351)
T PRK09112 25 LFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPD-PAEAPE---TLADPDPASPVWRQIAQGAH 100 (351)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCc-cccCcc---ccCCCCCCCHHHHHHHcCCC
Confidence 345566777788887777644 6899999999999999999887643210 001110 00111111112233322211
Q ss_pred C-------C--c-----chhhhHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCC-CCCcEEEEec
Q 001897 236 L-------D--V-----KMEESMQRLGIRLHERLL----RESNFLLILDDVWETI--DLDSLGVPQPED-HGGSKIILTS 294 (998)
Q Consensus 236 ~-------~--~-----~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~l~~~l~~~-~~gs~iivTt 294 (998)
. + . ......++ .+.+.+.+. .+++-++|+|+++... ..+.+...+-.. ....-|++|+
T Consensus 101 Pdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 101 PNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred CCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 0 0 0 00111222 223333332 3446789999998662 223332222211 2233455665
Q ss_pred CChHHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHH
Q 001897 295 RSLEVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMG 358 (998)
Q Consensus 295 R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 358 (998)
+...+... .+....+++.+++.++..+++.+...... -..+....|++.++|.|.....+.
T Consensus 180 ~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 180 SSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55444321 12235899999999999999987432111 224557789999999998765443
No 99
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.85 E-value=0.00056 Score=76.57 Aligned_cols=183 Identities=11% Similarity=0.071 Sum_probs=103.3
Q ss_pred cccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccc-----------------cCCCCeEEEEEe
Q 001897 156 HQTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSS-----------------AHRSGMVIWATV 217 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-----------------~~~f~~~~wv~~ 217 (998)
...|.++.++.+.+++..++. ..+.++|++|+||||+|+.+...+..... ..+++. +++..
T Consensus 15 ~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~ 93 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDA 93 (355)
T ss_pred hccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeec
Confidence 334556677777777776654 46789999999999999999887642211 012332 33332
Q ss_pred CCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCCCcEEEEecC
Q 001897 218 SKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKIILTSR 295 (998)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR 295 (998)
+......+ .+++.+.+. ..-..+++-++|+|+++.. ...+.+...+......+.+|++|.
T Consensus 94 ~~~~~~~~-~~~l~~~~~-----------------~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~ 155 (355)
T TIGR02397 94 ASNNGVDD-IREILDNVK-----------------YAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATT 155 (355)
T ss_pred cccCCHHH-HHHHHHHHh-----------------cCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeC
Confidence 21111111 112222111 0001123568899998655 223334333322233556666664
Q ss_pred ChH-HHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHH
Q 001897 296 SLE-VCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMG 358 (998)
Q Consensus 296 ~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 358 (998)
+.. +.. .......+++.++++++..+.+..++..... .--++.+..+++.++|.|..+....
T Consensus 156 ~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 156 EPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 433 322 2223357888999999998888887743221 1124667888999999887665443
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.80 E-value=0.00024 Score=73.73 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=87.9
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
...+.+.|+|..|+|||+||+.+++..... .. ..++++..... .. + .
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~----~~-~~~~i~~~~~~------~~----~------------------~ 86 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG----GR-NARYLDAASPL------LA----F------------------D 86 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC----CC-cEEEEehHHhH------HH----H------------------h
Confidence 345678999999999999999999875321 11 24455543211 00 0 0
Q ss_pred HHHcCCeEEEEEccccccccc--ccccCCCCC-CCCCc-EEEEecCChHH--------HhhcCCCeEEEccCCChHHHHH
Q 001897 254 RLLRESNFLLILDDVWETIDL--DSLGVPQPE-DHGGS-KIILTSRSLEV--------CMAMKTDVEVRVDLLNDDEAWQ 321 (998)
Q Consensus 254 ~l~~~~r~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs-~iivTtR~~~v--------~~~~~~~~~~~l~~L~~~~~~~ 321 (998)
.. .+ .-++|+||+.....+ ..+...+.. ...+. .||+|++.... ...+.....+++.++++++-..
T Consensus 87 ~~-~~-~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~ 164 (227)
T PRK08903 87 FD-PE-AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIA 164 (227)
T ss_pred hc-cc-CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHH
Confidence 11 12 347889999754221 112111111 12233 46677664322 1133345789999999988777
Q ss_pred HHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHh
Q 001897 322 LFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAM 361 (998)
Q Consensus 322 lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 361 (998)
++.+.+.... ..--++....+++.+.|.+..+..+-..+
T Consensus 165 ~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 165 ALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 7766542221 22234567788888999988876665554
No 101
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00054 Score=77.66 Aligned_cols=180 Identities=16% Similarity=0.102 Sum_probs=103.0
Q ss_pred cccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccc----------------cCCCCeEEEEEeC
Q 001897 156 HQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSS----------------AHRSGMVIWATVS 218 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~----------------~~~f~~~~wv~~s 218 (998)
+..|.+..++.+.+++..+++. .+.++|+.|+||||+|+.++..+..... ...+.-++.++.+
T Consensus 14 dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaa 93 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAA 93 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecc
Confidence 3344455666666777777665 7899999999999999999875421100 0112223445544
Q ss_pred CCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEE-ecC
Q 001897 219 KELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIIL-TSR 295 (998)
Q Consensus 219 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-TtR 295 (998)
...++.++- +|++... ..-..+++-++|+|++.... ..+.+...+-.-.+.+++|+ ||.
T Consensus 94 s~~~vddIR-~Iie~~~-----------------~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 94 SNTSVDDIK-VILENSC-----------------YLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred cCCCHHHHH-HHHHHHH-----------------hccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 433333322 2222111 00012246689999997652 23344333322233555555 444
Q ss_pred ChHHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 296 SLEVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 296 ~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
...+... .+....+++.+++.++..+.+.+.+...... --++....|++.++|.+-.+
T Consensus 156 ~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~-i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 156 VKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE-HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred hHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 4444332 2344678999999999999998887433221 22445678899998877543
No 102
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.77 E-value=5.1e-05 Score=76.10 Aligned_cols=46 Identities=26% Similarity=0.362 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHhh---cCCCceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 157 QTTASKTLGKLMKLL---DCDEIRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l---~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
+.||+++++++...+ .....+.+.|+|.+|+|||+|+++++..+..
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457888999998888 3446789999999999999999999988764
No 103
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00049 Score=78.39 Aligned_cols=184 Identities=15% Similarity=0.119 Sum_probs=100.3
Q ss_pred cchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhcccc----------------CCCCeEEEEEeCCC
Q 001897 158 TTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSA----------------HRSGMVIWATVSKE 220 (998)
Q Consensus 158 ~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~----------------~~f~~~~wv~~s~~ 220 (998)
.|.+.....+...+..+++ ..+.++|++|+||||+|+.+++.+...... ..+..++.+..+..
T Consensus 17 vGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~ 96 (472)
T PRK14962 17 VGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASN 96 (472)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCccc
Confidence 3444455556666666666 468899999999999999998875321100 00111233333322
Q ss_pred CCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCCCcEEE-EecCCh
Q 001897 221 LNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKII-LTSRSL 297 (998)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vTtR~~ 297 (998)
.++.++ ++|.+... ..-..+++-++|+|+++.. ...+.+...+........+| .||...
T Consensus 97 ~gid~i-R~i~~~~~-----------------~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~ 158 (472)
T PRK14962 97 RGIDEI-RKIRDAVG-----------------YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLE 158 (472)
T ss_pred CCHHHH-HHHHHHHh-----------------hChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChH
Confidence 222222 12221111 0011234679999999755 22333333332222234444 345434
Q ss_pred HHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccC-ChHHHHHHHHH
Q 001897 298 EVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKG-LPLAIITMGTA 360 (998)
Q Consensus 298 ~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~~ 360 (998)
.+... ......+++.+++.++....+.+.+..... .--.+....|++.++| ++.|+..+..+
T Consensus 159 kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 159 KVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44332 233468899999999998888887733221 1224567788887765 56666665543
No 104
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.77 E-value=3.7e-06 Score=95.76 Aligned_cols=128 Identities=32% Similarity=0.387 Sum_probs=96.9
Q ss_pred CCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCcc-ccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeC
Q 001897 559 GFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLPA-LGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNL 637 (998)
Q Consensus 559 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 637 (998)
.+..+..+++..+.+...-..++.+.+|.+|++.+|. +..+.. +..+.+|++|++++|.|+.+ ..+..+..|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccccccc-cchhhccchhhhee
Confidence 3456666678888777755668889999999999876 444554 88899999999999999987 45777888999999
Q ss_pred CCCcccccccccccCCCCCccEEEcccCcccccccCccccccccccc--ccccccCceEEEEeecCCC
Q 001897 638 SRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEE--LGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 638 ~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~ 703 (998)
.+|. +..+.. +..++.|+.+++++|.+.. +.. +..+.+++.+.+..+.+..
T Consensus 148 ~~N~-i~~~~~--~~~l~~L~~l~l~~n~i~~------------ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 148 SGNL-ISDISG--LESLKSLKLLDLSYNRIVD------------IENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccCc-chhccC--CccchhhhcccCCcchhhh------------hhhhhhhhccchHHHhccCCchhc
Confidence 9998 666654 6678999999999887632 122 4666777777776665543
No 105
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=7.6e-05 Score=82.08 Aligned_cols=196 Identities=15% Similarity=0.041 Sum_probs=102.8
Q ss_pred cccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccccCCCC-eEEEEEeCCCCCHHHHHHHHHHH
Q 001897 156 HQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSG-MVIWATVSKELNLRWVQAQIAER 233 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~ 233 (998)
...|.++....+.+.+..+++. .+.++|+.|+||||+|..+...+-.+.... .. +..-......+..-...+.|...
T Consensus 20 ~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~-~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPG-GDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCC-CCccccccccccCCCCChHHHHHHcc
Confidence 3445566677788888777655 588999999999999999988764321100 00 00000000000000111112111
Q ss_pred hcCCc--------------chhhhHHHHHHHHHHHH----HcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEe
Q 001897 234 LNLDV--------------KMEESMQRLGIRLHERL----LRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILT 293 (998)
Q Consensus 234 l~~~~--------------~~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivT 293 (998)
-..+. ......++ .+.+.+.+ ..+.+.++|+||++... ....+...+-.-..++.+|++
T Consensus 99 ~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~ 177 (365)
T PRK07471 99 AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLV 177 (365)
T ss_pred CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 11000 00011111 22222222 22346789999997652 233333322222235556665
Q ss_pred cCCh-HHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHH
Q 001897 294 SRSL-EVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMG 358 (998)
Q Consensus 294 tR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 358 (998)
|... .+.. ..+....+.+.+++.++..+++.+..... .......+++.++|.|.....+.
T Consensus 178 t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 178 SHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred ECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----CHHHHHHHHHHcCCCHHHHHHHh
Confidence 5543 3322 22334689999999999999998764221 11222678999999998765543
No 106
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00079 Score=74.81 Aligned_cols=174 Identities=11% Similarity=0.061 Sum_probs=94.4
Q ss_pred chHHHHHHHHHhhcCCC----------ceEEEEEeCCCChHHHHHHHHHHHhhhccc----------------cCCCCeE
Q 001897 159 TASKTLGKLMKLLDCDE----------IRRIGIWGLGGIGKTTLVKNLNNILKRDSS----------------AHRSGMV 212 (998)
Q Consensus 159 ~~~~~~~~l~~~l~~~~----------~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----------------~~~f~~~ 212 (998)
|.+..++.|..++..+. ..-+.++|+.|+||||+|+.++..+..... ..|.|.
T Consensus 9 Gq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~- 87 (394)
T PRK07940 9 GQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDV- 87 (394)
T ss_pred ChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-
Confidence 44455566666665543 456889999999999999999876533210 012221
Q ss_pred EEEEeC-CCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcE
Q 001897 213 IWATVS-KELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSK 289 (998)
Q Consensus 213 ~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ 289 (998)
.++... ....+.++ +++.+ .+...-..+++-++|+|+++... ..+.+...+-....+..
T Consensus 88 ~~i~~~~~~i~i~~i-R~l~~-----------------~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~ 149 (394)
T PRK07940 88 RVVAPEGLSIGVDEV-RELVT-----------------IAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTV 149 (394)
T ss_pred EEeccccccCCHHHH-HHHHH-----------------HHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCe
Confidence 122111 11111111 11111 11111112335578889998762 22333322222223454
Q ss_pred EEE-ecCChHHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 290 IIL-TSRSLEVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 290 iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
+|+ ||....+... .+....+.+.+++.++..+.+.+..+. ..+.+..++..++|.|.....+
T Consensus 150 fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 150 WLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred EEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHHHH
Confidence 555 4444444432 233468999999999999888754321 1345778999999998755443
No 107
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=6.6e-07 Score=99.99 Aligned_cols=125 Identities=27% Similarity=0.296 Sum_probs=70.6
Q ss_pred cccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChh-hhcccCCceEe
Q 001897 512 VNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLS-LLQLHNCRALL 590 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~ 590 (998)
|..+...+++.|.+..+...+.-++.++.|++++| .+.++. .+..+++|+.|||++|.+..+|.- ...+. |..|+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH--HHHhcccccccccccchhccccccchhhhh-heeee
Confidence 55677777777776655555555666667777666 333333 346666677777777766666542 22222 66666
Q ss_pred ecCCCCCCCCccccCCCCCCeeeecCCCCcccC--hhhhcCcCCcEEeCCCCc
Q 001897 591 LRDCFYLEDLPALGGLTKLQDLDLSATSIRELP--RGMENLSNLRRLNLSRTH 641 (998)
Q Consensus 591 L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 641 (998)
+++|. ++.+-.+.+|.+|+.||+++|-+.... .-++.|..|+.|+|.+|+
T Consensus 239 lrnN~-l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNA-LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecccH-HHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 66543 444445566666666666665444221 124445555566665554
No 108
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00031 Score=81.61 Aligned_cols=183 Identities=14% Similarity=0.138 Sum_probs=100.2
Q ss_pred ccccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhcccc----------------CCCCeEEEEEe
Q 001897 155 EHQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSA----------------HRSGMVIWATV 217 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~----------------~~f~~~~wv~~ 217 (998)
....|.+..+..|..++..+++. .+.++|+.|+||||+|+.+.+.+...... +.|--++.+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEida 95 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDA 95 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEec
Confidence 34445566777788888777654 67999999999999999998865322100 01111123332
Q ss_pred CCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc--cccccCCCCCCCCCcEEEEecC
Q 001897 218 SKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID--LDSLGVPQPEDHGGSKIILTSR 295 (998)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iivTtR 295 (998)
+....+..+ +++++ .....-..+++-++|||++..... .+.+...+-.-...+++|++|.
T Consensus 96 As~~gVd~I-Relle-----------------~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 96 ASNTGIDNI-REVLE-----------------NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred cccCCHHHH-HHHHH-----------------HHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 222222111 11111 111111113466899999976532 2233222222223455665554
Q ss_pred C-hHHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 296 S-LEVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 296 ~-~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
+ ..+.. ..+....+++.+++.++....+.+.+..... .--.+....|++.++|.+.-+..
T Consensus 158 d~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHHHHHH
Confidence 3 32221 1122246788899999999998887743222 12245678899999998754433
No 109
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00058 Score=79.87 Aligned_cols=191 Identities=15% Similarity=0.106 Sum_probs=101.4
Q ss_pred cccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001897 156 HQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERL 234 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 234 (998)
...|.+..+..|...+..+++. .+.++|+.|+||||+|+.+++.+..... +. ...+..-...+.|...-
T Consensus 17 divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~---~~-------~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETG---IT-------ATPCGECDNCREIEQGR 86 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccC---CC-------CCCCCCCHHHHHHHcCC
Confidence 3445556666777777776664 4689999999999999999887643210 00 00011111111111100
Q ss_pred -------cCCc-chhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcE-EEEecCChHHHh-h
Q 001897 235 -------NLDV-KMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSK-IILTSRSLEVCM-A 302 (998)
Q Consensus 235 -------~~~~-~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~-iivTtR~~~v~~-~ 302 (998)
.... ...++..++...+...-..+++-++|||+++... ..+.+...+-.-....+ |++||....+.. .
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 0000 0001122222222222123446789999998663 33333322222122344 445555444432 2
Q ss_pred cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 303 MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
.+-...|++.+++.++....+.+.+..... ..-......|++.++|.+-.+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 233468999999999999999887632221 122345678999999977654443
No 110
>PTZ00202 tuzin; Provisional
Probab=97.74 E-value=0.00089 Score=72.58 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=94.8
Q ss_pred cccccchHHHHHHHHHhhcC---CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDC---DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQI 230 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 230 (998)
..++.||++++..+...+.+ +..+++.|.|++|+|||||++.+.... + + ..++++.. +..++++.|
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l------~-~-~qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE------G-M-PAVFVDVR---GTEDTLRSV 329 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC------C-c-eEEEECCC---CHHHHHHHH
Confidence 44677788888887777643 345699999999999999999998642 1 1 12233322 779999999
Q ss_pred HHHhcCCcchh--hhHHHHHHHHHHHHHc-CCeEEEEEcccccccccccc---cCCCCCCCCCcEEEEecCChHHHhh--
Q 001897 231 AERLNLDVKME--ESMQRLGIRLHERLLR-ESNFLLILDDVWETIDLDSL---GVPQPEDHGGSKIILTSRSLEVCMA-- 302 (998)
Q Consensus 231 ~~~l~~~~~~~--~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~~~~~l---~~~l~~~~~gs~iivTtR~~~v~~~-- 302 (998)
+.+||.+.... +-...+.+.+.+.... +++.+||+-==+ ...+..+ ...+..+..-|.|++----+.+...
T Consensus 330 L~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lre-g~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~ 408 (550)
T PTZ00202 330 VKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLRE-GSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANT 408 (550)
T ss_pred HHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecC-CCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcc
Confidence 99999743322 1223333344433333 567777764211 1111100 0112233344666655443333211
Q ss_pred -cCCCeEEEccCCChHHHHHHHHHhh
Q 001897 303 -MKTDVEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 303 -~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (998)
..--..|.+..++.++|.++-.+..
T Consensus 409 ~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 409 LLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cCccceeEecCCCCHHHHHHHHhhcc
Confidence 1222468889999999998876654
No 111
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=1.1e-05 Score=95.68 Aligned_cols=130 Identities=25% Similarity=0.285 Sum_probs=89.0
Q ss_pred cccceEEEeecCCcc--ccCCCC-CCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCce
Q 001897 512 VNSLKRVSFMNNSIT--KLPDCK-VHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRA 588 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~--~l~~~~-~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 588 (998)
..++++|++.+...- .-|..+ ..+|.|++|.+.+-.....--...+.++++|+.||+|+++++.+ ..+++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 456788888764422 111112 23899999998875332221234568899999999999999988 88999999999
Q ss_pred EeecCCCCCCC--CccccCCCCCCeeeecCCCCcccChh-------hhcCcCCcEEeCCCCcc
Q 001897 589 LLLRDCFYLED--LPALGGLTKLQDLDLSATSIRELPRG-------MENLSNLRRLNLSRTHY 642 (998)
Q Consensus 589 L~L~~~~~~~~--lp~i~~l~~L~~L~l~~~~l~~lp~~-------i~~L~~L~~L~l~~~~~ 642 (998)
|.+.+=..... +-.+.+|++|++||+|......-+.. -..|++||.||.+++..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 99987433321 11588999999999998644433311 12478888888887653
No 112
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00053 Score=79.03 Aligned_cols=183 Identities=13% Similarity=0.103 Sum_probs=101.1
Q ss_pred ccccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccc----------------cCCCCeEEEEEe
Q 001897 155 EHQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSS----------------AHRSGMVIWATV 217 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~----------------~~~f~~~~wv~~ 217 (998)
....|.+..+..|..++..+++. .+.++|+.|+||||+|+.+.+.+..... .+.|.-++.++.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 33445566677788888777665 5689999999999999999887643210 011112333333
Q ss_pred CCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEE-ec
Q 001897 218 SKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIIL-TS 294 (998)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-Tt 294 (998)
+....+.++ +++++.+ ...-..++.-++|+|+++... ..+.+...+-.-...+++|+ ||
T Consensus 96 as~~~v~~i-R~l~~~~-----------------~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 96 ASRTKVEDT-RELLDNI-----------------PYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred cccCCHHHH-HHHHHHH-----------------hhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 322222222 1222211 111112345688999998752 33333333322223455555 44
Q ss_pred CChHHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 295 RSLEVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 295 R~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
....+.. ..+....+++++++.++....+.+.+...... -..+....|++.++|-+.-+..
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~-~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE-FENAALDLLARAANGSVRDALS 219 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHH
Confidence 4333322 12223568899999998887777666332221 1234566888999987754433
No 113
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00046 Score=77.69 Aligned_cols=195 Identities=12% Similarity=0.064 Sum_probs=99.8
Q ss_pred cchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEE-eCCCCCHHHHHHHHHHHhc
Q 001897 158 TTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWAT-VSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 158 ~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l~ 235 (998)
.|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++.+..... .....|.. ....++.-...+++.....
T Consensus 19 iGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~---~~~~~~~~~~~~~c~~c~~c~~~~~~~~ 95 (397)
T PRK14955 19 TAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRM---IDDADYLQEVTEPCGECESCRDFDAGTS 95 (397)
T ss_pred cChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCC---cCcccccccCCCCCCCCHHHHHHhcCCC
Confidence 34455566677777777665 4889999999999999999887643210 00000000 0000000011111111000
Q ss_pred CC-------c-chhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEE-ecCChHHHhhc-
Q 001897 236 LD-------V-KMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIIL-TSRSLEVCMAM- 303 (998)
Q Consensus 236 ~~-------~-~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~- 303 (998)
.+ . ...+...+....+...-...++-++|+|+++... .++.+...+....+.+.+|+ |++...+....
T Consensus 96 ~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~ 175 (397)
T PRK14955 96 LNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175 (397)
T ss_pred CCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHH
Confidence 00 0 0001111111112111112346688999987653 34444444433334555554 44444443221
Q ss_pred CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 304 KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 304 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
.....+++.++++++..+.+.+.+.... ..--.+.+..|++.++|.+--+..
T Consensus 176 sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 176 SRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 2234688999999999888887763221 112345678999999997754433
No 114
>PRK06620 hypothetical protein; Validated
Probab=97.67 E-value=0.00017 Score=73.29 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=79.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLL 256 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 256 (998)
+.+.|+|++|+|||+|++.+++... ..++. ..+. . . +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~----------~~~~~--~~~~--------------------~-~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN----------AYIIK--DIFF--------------------N-E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC----------CEEcc--hhhh--------------------c-h-------hHH-
Confidence 6799999999999999998876421 11111 0000 0 0 011
Q ss_pred cCCeEEEEEcccccccccccccCCCC-CCCCCcEEEEecCC-------hHHHhhcCCCeEEEccCCChHHHHHHHHHhhC
Q 001897 257 RESNFLLILDDVWETIDLDSLGVPQP-EDHGGSKIILTSRS-------LEVCMAMKTDVEVRVDLLNDDEAWQLFSQNAG 328 (998)
Q Consensus 257 ~~~r~LlVlDdv~~~~~~~~l~~~l~-~~~~gs~iivTtR~-------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 328 (998)
+. .-++++||+....+. .+...+. -...|..||+|++. .+...++.....+++++++.++-..++.+.+.
T Consensus 84 ~~-~d~lliDdi~~~~~~-~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 84 EK-YNAFIIEDIENWQEP-ALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred hc-CCEEEEeccccchHH-HHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 12 457888999743211 1111000 01346789999873 22344556677899999999998888888774
Q ss_pred CCCCCCCchHHHHHHHHHccCChHH
Q 001897 329 VAASKDPIKPFAQAIARECKGLPLA 353 (998)
Q Consensus 329 ~~~~~~~~~~~~~~i~~~c~glPla 353 (998)
... -.--+++..-|++++.|---.
T Consensus 162 ~~~-l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 162 ISS-VTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HcC-CCCCHHHHHHHHHHccCCHHH
Confidence 321 122356677777777765433
No 115
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.66 E-value=0.00053 Score=83.57 Aligned_cols=158 Identities=14% Similarity=0.167 Sum_probs=91.3
Q ss_pred cccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCC-CCeEEEEEeCCCCCHHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHR-SGMVIWATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~ 232 (998)
+.+..|++++++++++.|......-+.++|++|+|||++|+.++..+....+... .+..+|. + +...+...
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a~--- 252 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLAG--- 252 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhhh---
Confidence 3455678899999999888776677789999999999999999998754322211 1334442 1 11111110
Q ss_pred HhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc----------ccc-ccCCCCCCCCC-cEEEEecCChHHH
Q 001897 233 RLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID----------LDS-LGVPQPEDHGG-SKIILTSRSLEVC 300 (998)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~----------~~~-l~~~l~~~~~g-s~iivTtR~~~v~ 300 (998)
. ......+.....+.+.+...++.+|++|++..... ... +...+ ..| -++|-+|...+..
T Consensus 253 -~----~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 253 -T----KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEYK 324 (731)
T ss_pred -c----cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHHH
Confidence 0 00112333444445444444588999999874421 111 22222 223 3455444432221
Q ss_pred hhc-------CCCeEEEccCCChHHHHHHHHHhh
Q 001897 301 MAM-------KTDVEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 301 ~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 327 (998)
... .--..++++.++.++..+++.+..
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 110 112468999999999999998665
No 116
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.001 Score=77.65 Aligned_cols=182 Identities=13% Similarity=0.103 Sum_probs=101.0
Q ss_pred cccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhcccc---------------------CCCCeEE
Q 001897 156 HQTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSA---------------------HRSGMVI 213 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~---------------------~~f~~~~ 213 (998)
...|.+..+..|.+++..+++ ..+.++|+.|+||||+|+.+.+.+...... +.+.-++
T Consensus 17 dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~ 96 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYT 96 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCcee
Confidence 344555667777788877766 466899999999999999997765321000 0011112
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEE
Q 001897 214 WATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKII 291 (998)
Q Consensus 214 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ii 291 (998)
+++.+....+.+ ..+........-..++.-++|||+++... .++.+...+-.-....++|
T Consensus 97 eldaas~~~Vd~------------------iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fI 158 (618)
T PRK14951 97 ELDAASNRGVDE------------------VQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFV 158 (618)
T ss_pred ecCcccccCHHH------------------HHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEE
Confidence 222221111111 11111111111112335588999998762 3444443332222344455
Q ss_pred -EecCChHHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 292 -LTSRSLEVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 292 -vTtR~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
+||....+.. ..+....+++++++.++..+.+.+.+...... --.+....|++.++|.+--+..
T Consensus 159 L~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~-ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 159 LATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP-AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred EEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 5555444432 23344789999999999999998877433221 2245567889999987755443
No 117
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=5.6e-05 Score=54.52 Aligned_cols=35 Identities=34% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCccEEEcCCCCCCCCChhhhcccCCceEeecCCC
Q 001897 561 PALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCF 595 (998)
Q Consensus 561 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~ 595 (998)
++|++|++++|+|+.+|..+++|++|++|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 35677777777777776666667666666666664
No 118
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.00053 Score=78.98 Aligned_cols=183 Identities=13% Similarity=0.076 Sum_probs=99.8
Q ss_pred ccccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhcccc-----------------CCCCeEEEEE
Q 001897 155 EHQTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSA-----------------HRSGMVIWAT 216 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-----------------~~f~~~~wv~ 216 (998)
....|.+..++.+.+++..+++ +.+.++|+.|+||||+|+.+++.+...... .+.+ .+++.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D-iieId 94 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD-IVELD 94 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc-eEEec
Confidence 3344556667777777766554 468899999999999999998876421100 0111 22222
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH-HHcCCeEEEEEcccccc--cccccccCCCCCCCCCcEEE-E
Q 001897 217 VSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER-LLRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKII-L 292 (998)
Q Consensus 217 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii-v 292 (998)
.+....+.++ +.+.+ .+... ...+ +-++|+|+++.. ..+..+...+-.....+.+| +
T Consensus 95 aas~igVd~I-ReIi~-----------------~~~~~P~~~~-~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~ 155 (605)
T PRK05896 95 AASNNGVDEI-RNIID-----------------NINYLPTTFK-YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFA 155 (605)
T ss_pred cccccCHHHH-HHHHH-----------------HHHhchhhCC-cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2211122111 11111 11111 1123 446999998764 23333333222222244444 4
Q ss_pred ecCChHHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChH-HHHHHH
Q 001897 293 TSRSLEVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPL-AIITMG 358 (998)
Q Consensus 293 TtR~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 358 (998)
|+....+.. ..+....+++.++++++....+.+.+..... .--.+.+..+++.++|.+- |+..+-
T Consensus 156 Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 156 TTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred CCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 554444432 2233457899999999999888887743221 1124557788999999654 444433
No 119
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.62 E-value=0.00041 Score=73.53 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=68.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
...-+.++|++|+||||+|+.+++.+...... ....++.++. .++.... .+ . . ...+.+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~---~~~~~v~~~~----~~l~~~~---~g-~-----~----~~~~~~~ 100 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVL---SKGHLIEVER----ADLVGEY---IG-H-----T----AQKTREV 100 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcc---cCCceEEecH----HHhhhhh---cc-c-----h----HHHHHHH
Confidence 44568899999999999999998875321110 1111233321 1111111 11 0 1 1111122
Q ss_pred HHcCCeEEEEEccccccc----------ccccccCCCCCCCCCcEEEEecCChHH----------HhhcCCCeEEEccCC
Q 001897 255 LLRESNFLLILDDVWETI----------DLDSLGVPQPEDHGGSKIILTSRSLEV----------CMAMKTDVEVRVDLL 314 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtR~~~v----------~~~~~~~~~~~l~~L 314 (998)
+.....-+|++|++.... ..+.+...+........+|+++...+. ...+ ...++++++
T Consensus 101 ~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~ 178 (261)
T TIGR02881 101 IKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDY 178 (261)
T ss_pred HHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc--ceEEEECCC
Confidence 222123588999997531 122222222222223345556544332 1121 346889999
Q ss_pred ChHHHHHHHHHhhC
Q 001897 315 NDDEAWQLFSQNAG 328 (998)
Q Consensus 315 ~~~~~~~lf~~~~~ 328 (998)
+.++-.+++.+.+.
T Consensus 179 ~~~el~~Il~~~~~ 192 (261)
T TIGR02881 179 TVEELMEIAERMVK 192 (261)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988774
No 120
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=6.5e-05 Score=54.21 Aligned_cols=38 Identities=45% Similarity=0.712 Sum_probs=23.5
Q ss_pred CCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccc
Q 001897 608 KLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKI 646 (998)
Q Consensus 608 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~ 646 (998)
+|++|++++|+|+.+|..+++|++|+.|++++|+ +..+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 5666666666666666666677777777776665 4443
No 121
>PF14516 AAA_35: AAA-like domain
Probab=97.59 E-value=0.019 Score=63.01 Aligned_cols=190 Identities=14% Similarity=0.092 Sum_probs=109.9
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC-----CCHHHH----HHHHHHHh
Q 001897 164 LGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE-----LNLRWV----QAQIAERL 234 (998)
Q Consensus 164 ~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~----~~~i~~~l 234 (998)
-+++.+.+... -..+.|.|+-.+|||+|...+.+..+.+ .+ .++++++... .+..+. ...|.+++
T Consensus 20 e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~----~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L 93 (331)
T PF14516_consen 20 EQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ----GY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQL 93 (331)
T ss_pred HHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC----CC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHc
Confidence 34455555443 3689999999999999999998876532 23 4567877642 234444 44555666
Q ss_pred cCCcchhhh-------HHHHHHHHHHHHH--cCCeEEEEEcccccccccc----cccCCC----------CCCCCCcEEE
Q 001897 235 NLDVKMEES-------MQRLGIRLHERLL--RESNFLLILDDVWETIDLD----SLGVPQ----------PEDHGGSKII 291 (998)
Q Consensus 235 ~~~~~~~~~-------~~~~~~~l~~~l~--~~~r~LlVlDdv~~~~~~~----~l~~~l----------~~~~~gs~ii 291 (998)
+.+....+. ......-+.+.+. .+++.+|+||+++...... ++...+ +.-..=+-|+
T Consensus 94 ~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~ 173 (331)
T PF14516_consen 94 KLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLIL 173 (331)
T ss_pred CCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEE
Confidence 654322111 1122222333332 2469999999998653311 111100 0000111122
Q ss_pred EecC-ChHHHhh----cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHhcCC
Q 001897 292 LTSR-SLEVCMA----MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAMRGK 364 (998)
Q Consensus 292 vTtR-~~~v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~ 364 (998)
+.+. ....... ......+++.+++.+|...|..++-.. .-....++|...+||+|.-+..++..+...
T Consensus 174 ~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 174 AGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2221 1111111 122357899999999999998876422 112338899999999999999999999664
No 122
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.58 E-value=0.0012 Score=75.94 Aligned_cols=181 Identities=17% Similarity=0.195 Sum_probs=103.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
..-+.|+|+.|+|||+|++.+++...... .-..+++++.. ++...+...+... .. ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~---~~~~v~yi~~~------~~~~~~~~~~~~~-----~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN---PNAKVVYVTSE------KFTNDFVNALRNN-----TM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC---CCCeEEEEEHH------HHHHHHHHHHHcC-----cH----HHHHHHH
Confidence 45689999999999999999999865321 11235566442 3334444443211 11 2233333
Q ss_pred HcCCeEEEEEcccccccc---c-ccccCCCC-CCCCCcEEEEecCCh---------HHHhhcCCCeEEEccCCChHHHHH
Q 001897 256 LRESNFLLILDDVWETID---L-DSLGVPQP-EDHGGSKIILTSRSL---------EVCMAMKTDVEVRVDLLNDDEAWQ 321 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~~~---~-~~l~~~l~-~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 321 (998)
.+ --+|||||+..... + +.+...+. -...|..||+||... .+..++..+..+++++.+.++-.+
T Consensus 210 ~~--~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 210 RS--VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred hc--CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 32 44899999965311 1 11111110 011245588887642 223455566789999999999999
Q ss_pred HHHHhhCCCCCCCCchHHHHHHHHHccCChHHHH----HHHH---HhcCCCCHHHHHHHHHHH
Q 001897 322 LFSQNAGVAASKDPIKPFAQAIARECKGLPLAII----TMGT---AMRGKTNVKLWKHALKEW 377 (998)
Q Consensus 322 lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~----~~~~---~l~~~~~~~~w~~~~~~l 377 (998)
++.+.+.... ..--+++..-|++.+.|..-.+. .+.. .....-+.+..+.++..+
T Consensus 288 il~~~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 288 ILKKKAEEEG-IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9999885421 12234677888888888665432 2222 112223455566666644
No 123
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.55 E-value=0.00016 Score=78.94 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=48.7
Q ss_pred cccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCC-CCCCCChhhhcccCCceEe
Q 001897 512 VNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGT-RIHSLPLSLLQLHNCRALL 590 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~-~~~~lp~~i~~l~~L~~L~ 590 (998)
+..+++|++++|.+..+|. + -++|+.|.+.++..+..+|..+ ..+|++|++++| .+..+|.+ |+.|+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred hcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEE
Confidence 3567788888888888773 1 2358888888877777777544 357888888888 67777754 45555
Q ss_pred ecC
Q 001897 591 LRD 593 (998)
Q Consensus 591 L~~ 593 (998)
+..
T Consensus 119 L~~ 121 (426)
T PRK15386 119 IKG 121 (426)
T ss_pred eCC
Confidence 544
No 124
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0023 Score=73.39 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=100.4
Q ss_pred ccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhcccc-----------------CCCCeEEEEEeC
Q 001897 157 QTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSA-----------------HRSGMVIWATVS 218 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-----------------~~f~~~~wv~~s 218 (998)
..|.+...+.+...+..+++. +..++|+.|+||||+|+.+.+.+-..... .+++ ++.+..+
T Consensus 16 iiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eldaa 94 (535)
T PRK08451 16 LIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMDAA 94 (535)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEeccc
Confidence 344455667777777777665 56899999999999999998875321110 1111 2222222
Q ss_pred CCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCC
Q 001897 219 KELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRS 296 (998)
Q Consensus 219 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~ 296 (998)
....+.++...+ +. ....-..+++-++|+|+++... ..+.+...+-.....+++|++|.+
T Consensus 95 s~~gId~IReli-e~-----------------~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 95 SNRGIDDIRELI-EQ-----------------TKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred cccCHHHHHHHH-HH-----------------HhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 221222221111 11 0000011236688999997652 233333333222334555555544
Q ss_pred -hHHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 297 -LEVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 297 -~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
..+.. ..+....+++.+++.++..+.+.+.+..... .--++.+..|++.++|.+--+..+
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 22221 1223468999999999999888877643222 122456788999999988555443
No 125
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0051 Score=71.43 Aligned_cols=183 Identities=14% Similarity=0.123 Sum_probs=100.1
Q ss_pred chHHHHHHHHHhhcCCC-ceEEEEEeCCCChHHHHHHHHHHHhhhcccc-----------------CCCCeEEEEEeCCC
Q 001897 159 TASKTLGKLMKLLDCDE-IRRIGIWGLGGIGKTTLVKNLNNILKRDSSA-----------------HRSGMVIWATVSKE 220 (998)
Q Consensus 159 ~~~~~~~~l~~~l~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-----------------~~f~~~~wv~~s~~ 220 (998)
|.+..+..|..++..++ ...+.++|+.|+||||+|+.+.+.+...... .+.| ++++..+..
T Consensus 20 GQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD-v~eId~a~~ 98 (624)
T PRK14959 20 GQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD-VVEIDGASN 98 (624)
T ss_pred CCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc-eEEEecccc
Confidence 43444555666666655 4678889999999999999998876421100 0111 222322111
Q ss_pred CCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCCCcEEEE-ecCCh
Q 001897 221 LNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKIIL-TSRSL 297 (998)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~ 297 (998)
..+.++ ..+...+...-..+++-++|+|+++.. ...+.+...+-.-.....+|+ |+...
T Consensus 99 ~~Id~i------------------R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 99 RGIDDA------------------KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred cCHHHH------------------HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 111111 111111111111234678999999765 233444333322223444555 44434
Q ss_pred HHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh-HHHHHHHHHh
Q 001897 298 EVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP-LAIITMGTAM 361 (998)
Q Consensus 298 ~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l 361 (998)
.+... .+....+++.+++.++....+.+.+..... .--.+.+..|++.++|.+ .|+..+...+
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44322 222357899999999999888876643221 122456778899999854 6776665544
No 126
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0021 Score=75.34 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=98.4
Q ss_pred cccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEE-eCCCCCHHHHHHHHHHH
Q 001897 156 HQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWAT-VSKELNLRWVQAQIAER 233 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~ 233 (998)
...|.+..+..|..++..+++. .+.++|+.|+||||+|+.+.+.+..... .+.-.|.. +...++.-...+.+...
T Consensus 17 eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~---~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRM---IDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCc---CCccccccccCCCCccCHHHHHHhcc
Confidence 3445556666677777776664 5889999999999999999887643210 00000000 00011111111111110
Q ss_pred hcCC-------c-chhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEE-EecCChHHHh-
Q 001897 234 LNLD-------V-KMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKII-LTSRSLEVCM- 301 (998)
Q Consensus 234 l~~~-------~-~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ii-vTtR~~~v~~- 301 (998)
-..+ . ...+.+......+...-..+++-++|+|+++... ..+.+...+-.-...+.+| +|++...+..
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000 0 0001111222222111112236678999987653 2333433332222344444 5555444433
Q ss_pred hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChH
Q 001897 302 AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPL 352 (998)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 352 (998)
.......+++.+++.++....+.+.+..... .--.+.+..|++.++|..-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHH
Confidence 2344578999999999988888776632211 1224567889999999554
No 127
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0024 Score=71.56 Aligned_cols=180 Identities=11% Similarity=0.102 Sum_probs=97.6
Q ss_pred cccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccc---cCCCCeEE-EEEeCCCCCHHHHHHHH
Q 001897 156 HQTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSS---AHRSGMVI-WATVSKELNLRWVQAQI 230 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~---~~~f~~~~-wv~~s~~~~~~~~~~~i 230 (998)
...|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+.+..... ...|...+ -+......++.++. ++
T Consensus 18 ~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-~l 96 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIR-NL 96 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHH-HH
Confidence 334556667778888776655 48889999999999999999887643111 11222211 11111111122211 11
Q ss_pred HHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEec-CChHHHh-hcCCC
Q 001897 231 AERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTS-RSLEVCM-AMKTD 306 (998)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt-R~~~v~~-~~~~~ 306 (998)
++++.. .-..+ ++-++|+|+++... .++.+...+......+.+|++| ....+.. ..+..
T Consensus 97 ~~~~~~----------------~p~~~-~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~ 159 (367)
T PRK14970 97 IDQVRI----------------PPQTG-KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 159 (367)
T ss_pred HHHHhh----------------ccccC-CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcc
Confidence 111110 00112 35589999987542 2333332222222234455444 4333322 12234
Q ss_pred eEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 307 VEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 307 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
..++..++++++....+.+.+..... .--.+....+++.++|.+-.+
T Consensus 160 ~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 160 QIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred eeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 57899999999999888887743221 112456778888999865533
No 128
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0018 Score=75.34 Aligned_cols=180 Identities=14% Similarity=0.110 Sum_probs=98.4
Q ss_pred cccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccc----------------cCCCCeEEEEEeC
Q 001897 156 HQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSS----------------AHRSGMVIWATVS 218 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~----------------~~~f~~~~wv~~s 218 (998)
...|.+..+..+..++..+++. .+.++|+.|+||||+|+.+...+..+.. .+.|.-.+++..+
T Consensus 17 divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~ 96 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAA 96 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeecc
Confidence 3345556666777777776655 5689999999999999999887632110 0112122333322
Q ss_pred CCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEE-ecC
Q 001897 219 KELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIIL-TSR 295 (998)
Q Consensus 219 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-TtR 295 (998)
....+.++ +++++... ..-..+++-++|+|+++... ..+.+...+-.-...+.+|+ ||.
T Consensus 97 ~~~~vd~i-r~l~~~~~-----------------~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d 158 (527)
T PRK14969 97 SNTQVDAM-RELLDNAQ-----------------YAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (527)
T ss_pred ccCCHHHH-HHHHHHHh-----------------hCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCC
Confidence 22222211 12222111 00112346689999998663 23333333322223445554 444
Q ss_pred ChHHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 296 SLEVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 296 ~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
...+.. ..+....+++++++.++..+.+.+.+..... ..-+.....|++.++|.+--+
T Consensus 159 ~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 159 PQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred hhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 333321 1112357889999999998888777633221 122445678899999977533
No 129
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0021 Score=75.34 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=103.4
Q ss_pred cccccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 232 (998)
+....|.+..+..|.+++..+++. .+.++|+.|+||||+|+.+++.+........ ....+ +.++.-.-.+.|..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~-~~~~~----~~cg~c~~C~~i~~ 97 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGD-GGPTI----DLCGVGEHCQAIME 97 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc-CCCcc----ccCcccHHHHHHhc
Confidence 334456667777788888777654 6889999999999999999887643211000 00000 00011111122222
Q ss_pred HhcCCc-----c---hhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEE-EecCChHHHh
Q 001897 233 RLNLDV-----K---MEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKII-LTSRSLEVCM 301 (998)
Q Consensus 233 ~l~~~~-----~---~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ii-vTtR~~~v~~ 301 (998)
..+.+. . ..++..+....+...-...++-++|+|+++... ..+.+...+-.-..++++| +||....+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 111100 0 001111111111111112235678999987653 2334433332222345555 4544444432
Q ss_pred h-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 302 A-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 302 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
. .+....+++..+++++....+.+.+..... .--.+....|++.++|-+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 223467899999999999998887743221 12235677889999998765544
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.51 E-value=0.00091 Score=76.07 Aligned_cols=157 Identities=13% Similarity=0.218 Sum_probs=92.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCC-eEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSG-MVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..-+.|+|.+|+|||+|++.+++.+... ... .++|++. .++..++...+... ... .+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~----~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN----EPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHH
Confidence 4569999999999999999999986532 122 4566654 34555555554311 111 22233
Q ss_pred HHcCCeEEEEEcccccccc---c-ccccCCCC-CCCCCcEEEEecC-ChH--------HHhhcCCCeEEEccCCChHHHH
Q 001897 255 LLRESNFLLILDDVWETID---L-DSLGVPQP-EDHGGSKIILTSR-SLE--------VCMAMKTDVEVRVDLLNDDEAW 320 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~---~-~~l~~~l~-~~~~gs~iivTtR-~~~--------v~~~~~~~~~~~l~~L~~~~~~ 320 (998)
...+ .-+|++||+..... + +.+...+. -...|..||+||. ... +..++..+..+++++.+.+.-.
T Consensus 191 ~~~~-~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 191 YRKK-VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHhc-CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 3222 45899999975411 1 11111111 0122456888885 221 2223455668899999999999
Q ss_pred HHHHHhhCCCCCCCCchHHHHHHHHHccCChHH
Q 001897 321 QLFSQNAGVAASKDPIKPFAQAIARECKGLPLA 353 (998)
Q Consensus 321 ~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 353 (998)
+++.+.+..... .--+++..-|++.+.|..-.
T Consensus 270 ~IL~~~~~~~~~-~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 270 KIARKMLEIEHG-ELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHhccccCHHH
Confidence 999988843221 12356777888888775433
No 131
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.001 Score=78.66 Aligned_cols=190 Identities=15% Similarity=0.108 Sum_probs=100.8
Q ss_pred ccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001897 157 QTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (998)
..|.+..++.|..++..+++ ..+.++|+.|+||||+|+.+++.+........+ ..++.-...+.|....+
T Consensus 18 iiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~---------~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 18 LVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG---------RPCGTCEMCRAIAEGSA 88 (585)
T ss_pred hcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---------CCCccCHHHHHHhcCCC
Confidence 33445666667777776655 456899999999999999998875321100000 01111222233322211
Q ss_pred CCc---c--hhhhHHHHHHHHHHHHH----cCCeEEEEEcccccc--cccccccCCCCCCCCCcEEEEec-CChHHHh-h
Q 001897 236 LDV---K--MEESMQRLGIRLHERLL----RESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKIILTS-RSLEVCM-A 302 (998)
Q Consensus 236 ~~~---~--~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~-~ 302 (998)
.+. + .....+. .+.+.+.+. ..++-++|+|+++.. ...+.+...+......+.+|++| ....+.. .
T Consensus 89 ~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 110 0 0001111 111111111 124678999998755 23444433332222345555555 3333332 1
Q ss_pred cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 303 MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
.+....+++..++.++....+.+.+...... --.+.+..|++.++|.+..+...
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2233578899999999888888777432221 22456789999999988655443
No 132
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.50 E-value=0.00094 Score=76.04 Aligned_cols=143 Identities=16% Similarity=0.206 Sum_probs=75.7
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
.+-|.++|++|.|||++|+.+++.+........+....++.+... ++.. ..... .............+..
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~----eLl~----kyvGe--te~~ir~iF~~Ar~~a 285 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP----ELLN----KYVGE--TERQIRLIFQRAREKA 285 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch----hhcc----cccch--HHHHHHHHHHHHHHHh
Confidence 456899999999999999999998643211111223445554331 1111 11000 0011111112222222
Q ss_pred HcCCeEEEEEcccccccc---------c-----ccccCCCCC--CCCCcEEEEecCChHHHh-hc----CCCeEEEccCC
Q 001897 256 LRESNFLLILDDVWETID---------L-----DSLGVPQPE--DHGGSKIILTSRSLEVCM-AM----KTDVEVRVDLL 314 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~~~---------~-----~~l~~~l~~--~~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L 314 (998)
..+++++|+||+++.... . ..+...+.. ...+..||.||...+... .+ .-+..+++...
T Consensus 286 ~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~P 365 (512)
T TIGR03689 286 SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERP 365 (512)
T ss_pred hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCC
Confidence 234589999999975410 0 111111111 113445566665443321 11 22456899999
Q ss_pred ChHHHHHHHHHhhC
Q 001897 315 NDDEAWQLFSQNAG 328 (998)
Q Consensus 315 ~~~~~~~lf~~~~~ 328 (998)
+.++..++|.++..
T Consensus 366 d~e~r~~Il~~~l~ 379 (512)
T TIGR03689 366 DAEAAADIFSKYLT 379 (512)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998874
No 133
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=3.8e-05 Score=77.39 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=52.2
Q ss_pred CccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCcccccccc--C
Q 001897 841 KLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLRTICR--Q 918 (998)
Q Consensus 841 ~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~--~ 918 (998)
.+++++...|+-....... +...-+|++..+-+..|+ ++...... ....||.+.-|.|.. .++.++.. .
T Consensus 174 ~v~tlh~~~c~~~~w~~~~-~l~r~Fpnv~sv~v~e~P-lK~~s~ek------~se~~p~~~~LnL~~-~~idswasvD~ 244 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKN-KLSRIFPNVNSVFVCEGP-LKTESSEK------GSEPFPSLSCLNLGA-NNIDSWASVDA 244 (418)
T ss_pred hhhhhhcCCcHHHHHHHHH-hHHhhcccchheeeecCc-ccchhhcc------cCCCCCcchhhhhcc-cccccHHHHHH
Confidence 3444445555433222111 123356666666666654 22211110 012455555555544 33444422 2
Q ss_pred CCCCCCccEEEEecCCCCCCCCCC------CcccCCcceEecc
Q 001897 919 KESWQCLEQVKVIKCNLLRELPLT------AQNADTVKEIIGE 955 (998)
Q Consensus 919 ~~~l~~L~~L~i~~C~~L~~lP~~------~~~l~~L~~l~~~ 955 (998)
+..||+|..|.+.+.|-...+--+ +..+++++.|.|.
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 455777777777777766555322 4566777777764
No 134
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.48 E-value=0.00053 Score=73.20 Aligned_cols=131 Identities=14% Similarity=0.084 Sum_probs=70.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHc
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLR 257 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 257 (998)
-|.++|++|+||||+|+.++..+... +.....-++.++. .++ ...+.+.. .... ..+.+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~---g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~-~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRL---GYVRKGHLVSVTR----DDL----VGQYIGHT-----APKT-KEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc---CCcccceEEEecH----HHH----hHhhcccc-----hHHH-HHHHHHc--
Confidence 58899999999999998887765322 1111112444431 122 22221111 1111 1122222
Q ss_pred CCeEEEEEcccccc-----------cccccccCCCCCCCCCcEEEEecCChHHHhhcC--------CCeEEEccCCChHH
Q 001897 258 ESNFLLILDDVWET-----------IDLDSLGVPQPEDHGGSKIILTSRSLEVCMAMK--------TDVEVRVDLLNDDE 318 (998)
Q Consensus 258 ~~r~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~--------~~~~~~l~~L~~~~ 318 (998)
..-+|+||++... ...+.+...+.....+.+||.++.......... ....+++.+++.+|
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 2468899998632 111222222223334567777765443322211 13578999999999
Q ss_pred HHHHHHHhhC
Q 001897 319 AWQLFSQNAG 328 (998)
Q Consensus 319 ~~~lf~~~~~ 328 (998)
-.+++...+.
T Consensus 200 l~~I~~~~l~ 209 (284)
T TIGR02880 200 LLVIAGLMLK 209 (284)
T ss_pred HHHHHHHHHH
Confidence 9999888773
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.48 E-value=0.0013 Score=74.79 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=91.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
...+.|+|..|+|||+|++++++.+.... .-..++++++ .++...+...+... .. ..+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~---~~~~v~yi~~------~~~~~~~~~~~~~~-----~~----~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN---PNAKVVYVSS------EKFTNDFVNALRNN-----KM----EEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC---CCCcEEEEEH------HHHHHHHHHHHHcC-----CH----HHHHHHH
Confidence 35689999999999999999999875321 1123556643 34444555444311 11 1223333
Q ss_pred HcCCeEEEEEcccccccc---c-ccccCCCCC-CCCCcEEEEecCC---------hHHHhhcCCCeEEEccCCChHHHHH
Q 001897 256 LRESNFLLILDDVWETID---L-DSLGVPQPE-DHGGSKIILTSRS---------LEVCMAMKTDVEVRVDLLNDDEAWQ 321 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~ 321 (998)
.+ .-+|||||++.... + +.+...+.. ...|..+|+||.. ..+..++.....+++++.+.++-.+
T Consensus 198 ~~--~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 198 RS--VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred Hh--CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 22 34889999975421 1 111111110 1234568888763 1223344455679999999999999
Q ss_pred HHHHhhCCCCCCCCchHHHHHHHHHccCChHH
Q 001897 322 LFSQNAGVAASKDPIKPFAQAIARECKGLPLA 353 (998)
Q Consensus 322 lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 353 (998)
++.+.+..... .--+++...|++.+.|.+-.
T Consensus 276 il~~~~~~~~~-~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 276 ILQKKAEEEGL-ELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHH
Confidence 99998854322 22256677788888776544
No 136
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.47 E-value=1.1e-05 Score=71.81 Aligned_cols=107 Identities=23% Similarity=0.281 Sum_probs=77.3
Q ss_pred EEeecCCccccCC---CCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCC
Q 001897 518 VSFMNNSITKLPD---CKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDC 594 (998)
Q Consensus 518 l~l~~~~~~~l~~---~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 594 (998)
++++++.+-.+++ .+....+|...++++| .++++|..+-..++.+..|++++|.+..+|..+..++.||.|+++.|
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC
Confidence 3444554433332 2334556677778887 77888888877788888889998888888888888888888888887
Q ss_pred CCCCCCccccCCCCCCeeeecCCCCcccChh
Q 001897 595 FYLEDLPALGGLTKLQDLDLSATSIRELPRG 625 (998)
Q Consensus 595 ~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~ 625 (998)
.....+-.+..|.+|-+|+..++.+.++|-.
T Consensus 111 ~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 111 PLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 6554444566688888888888777777765
No 137
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.47 E-value=0.0023 Score=78.65 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=99.1
Q ss_pred cccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhcccc-CCCCeEEE-EEeCCCCCHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSA-HRSGMVIW-ATVSKELNLRWVQAQIA 231 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-~~f~~~~w-v~~s~~~~~~~~~~~i~ 231 (998)
+....|++.++.++++.+......-+.++|.+|+||||+|+.++..+....+. .-.+..+| +.++.-
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l----------- 254 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----------- 254 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh-----------
Confidence 34556788899999998887777777899999999999999999887533221 11223333 332210
Q ss_pred HHhcCCcchhhhHHHHHHHHHHHHH-cCCeEEEEEcccccccc-------cc--cccCCCCCCCCC-cEEEEecCChHHH
Q 001897 232 ERLNLDVKMEESMQRLGIRLHERLL-RESNFLLILDDVWETID-------LD--SLGVPQPEDHGG-SKIILTSRSLEVC 300 (998)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~~-------~~--~l~~~l~~~~~g-s~iivTtR~~~v~ 300 (998)
..........+.....+.+... .+++.+|++|++..... -+ .+..+. -..| -++|-||...+..
T Consensus 255 ---~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 255 ---QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAEYK 329 (852)
T ss_pred ---hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHHHh
Confidence 0000001122222233333332 23589999999876421 11 122222 2233 4566666543332
Q ss_pred hhc-------CCCeEEEccCCChHHHHHHHHHhhCC---CCCCCCchHHHHHHHHHccC
Q 001897 301 MAM-------KTDVEVRVDLLNDDEAWQLFSQNAGV---AASKDPIKPFAQAIARECKG 349 (998)
Q Consensus 301 ~~~-------~~~~~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~~~~~~i~~~c~g 349 (998)
... .--..+.+++++.+++.+++...... .....-..+....+++.+.+
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 111 12257999999999999997554421 11111123444566666654
No 138
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0039 Score=72.66 Aligned_cols=185 Identities=14% Similarity=0.066 Sum_probs=102.4
Q ss_pred cccchHHHHHHHHHhhcCCCceE-EEEEeCCCChHHHHHHHHHHHhhhcccc-------------------CCCCeEEEE
Q 001897 156 HQTTASKTLGKLMKLLDCDEIRR-IGIWGLGGIGKTTLVKNLNNILKRDSSA-------------------HRSGMVIWA 215 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~~~-------------------~~f~~~~wv 215 (998)
...|.+..++.|..++..+++.- +.++|+.|+||||+|+.++..+...... .+.+ ++.+
T Consensus 14 eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d-viei 92 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID-VVEL 92 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce-EEEe
Confidence 33455566677778887776654 6899999999999999998876422100 0111 2223
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCCCcE-EEE
Q 001897 216 TVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSK-IIL 292 (998)
Q Consensus 216 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-iiv 292 (998)
..+....+.++ ++| ...+...-...++-++|+|++... ...+.+...+..-..... |++
T Consensus 93 daas~~gvd~i-Rel-----------------~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~ 154 (584)
T PRK14952 93 DAASHGGVDDT-REL-----------------RDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFA 154 (584)
T ss_pred ccccccCHHHH-HHH-----------------HHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 22222122211 111 111111111233568899998765 233333333322223444 445
Q ss_pred ecCChHHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChH-HHHHHHHH
Q 001897 293 TSRSLEVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPL-AIITMGTA 360 (998)
Q Consensus 293 TtR~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~ 360 (998)
||....+.. ..+....+++.+++.++..+.+.+.+..... .--.+....|++..+|-+- |+..+-.+
T Consensus 155 tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 155 TTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred eCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 555554433 2233568999999999998888877643221 1123456778899999764 44444433
No 139
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0031 Score=71.85 Aligned_cols=177 Identities=14% Similarity=0.117 Sum_probs=97.2
Q ss_pred cccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccc------------------cCCCCeEEEEE
Q 001897 156 HQTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSS------------------AHRSGMVIWAT 216 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~------------------~~~f~~~~wv~ 216 (998)
...|.+..+..+..++..+++ ..+.++|+.|+||||+|+.+.+.+..... ..+++. +++.
T Consensus 18 diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~-~~i~ 96 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV-LEID 96 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce-EEee
Confidence 334555667777788777665 56889999999999999999887643210 011221 1222
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEec
Q 001897 217 VSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTS 294 (998)
Q Consensus 217 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt 294 (998)
-.....+.++. ++. ..+...-...++-++|+|+++... ..+.+...+-....+..+|++|
T Consensus 97 g~~~~gid~ir-~i~-----------------~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 97 GASHRGIEDIR-QIN-----------------ETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred ccccCCHHHHH-HHH-----------------HHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEe
Confidence 11111111111 111 111111112346788999987552 2333333332222355555555
Q ss_pred -CChHHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChH
Q 001897 295 -RSLEVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPL 352 (998)
Q Consensus 295 -R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 352 (998)
+...+... .+....+++.++++++....+.+.+..... .--.+.+..|++.++|.+-
T Consensus 159 ~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 159 TEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-ETSREALLPIARAAQGSLR 217 (451)
T ss_pred CChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 33333221 223457899999999988888877633211 1224567789999999664
No 140
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.0062 Score=66.20 Aligned_cols=189 Identities=13% Similarity=0.123 Sum_probs=114.9
Q ss_pred cchHHHHHHHHHhhc----CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001897 158 TTASKTLGKLMKLLD----CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAER 233 (998)
Q Consensus 158 ~~~~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 233 (998)
.||+.+++.+.+++. .....-+.|.|-+|.|||.+...++.+..... .. -.++++.+..-....+++..|...
T Consensus 153 ~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~--~~-~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 153 KGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS--KS-PVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred cchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc--cc-ceeEEEeeccccchHHHHHHHHHH
Confidence 356667666666654 34567899999999999999999998865321 11 245777777667788888888877
Q ss_pred hcCCcchhhhHHHHHHHHHHHHHcCC-eEEEEEccccccc--ccccccCCCC-CCCCCcEEEEecCCh--HHH----hhc
Q 001897 234 LNLDVKMEESMQRLGIRLHERLLRES-NFLLILDDVWETI--DLDSLGVPQP-EDHGGSKIILTSRSL--EVC----MAM 303 (998)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~l~~~~-r~LlVlDdv~~~~--~~~~l~~~l~-~~~~gs~iivTtR~~--~v~----~~~ 303 (998)
+-..........+..+.+.++..+.+ -+|+|+|.++... .-..+...|- ..-+++|+|+.---. +.. ...
T Consensus 230 ~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL 309 (529)
T KOG2227|consen 230 LLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRL 309 (529)
T ss_pred HHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhh
Confidence 72111111122445566666666554 6999999987652 1111211111 223466666543211 111 111
Q ss_pred -----CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccC
Q 001897 304 -----KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKG 349 (998)
Q Consensus 304 -----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g 349 (998)
-....+...|-+.++-.++|..+..............+-++++|.|
T Consensus 310 ~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 310 NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA 360 (529)
T ss_pred hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc
Confidence 1345677899999999999999986544444444444555566544
No 141
>CHL00181 cbbX CbbX; Provisional
Probab=97.42 E-value=0.0013 Score=70.26 Aligned_cols=132 Identities=13% Similarity=0.050 Sum_probs=70.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLL 256 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 256 (998)
..|.++|++|+||||+|+.+++..... +.-...-|+.++ ..++.. .+-... ... ...+.+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~---g~~~~~~~~~v~----~~~l~~----~~~g~~-----~~~-~~~~l~~a- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKL---GYIKKGHLLTVT----RDDLVG----QYIGHT-----APK-TKEVLKKA- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCCCCCceEEec----HHHHHH----HHhccc-----hHH-HHHHHHHc-
Confidence 358899999999999999998864321 111111244443 222222 221111 011 11122211
Q ss_pred cCCeEEEEEcccccc-----------cccccccCCCCCCCCCcEEEEecCChHHHhhc--------CCCeEEEccCCChH
Q 001897 257 RESNFLLILDDVWET-----------IDLDSLGVPQPEDHGGSKIILTSRSLEVCMAM--------KTDVEVRVDLLNDD 317 (998)
Q Consensus 257 ~~~r~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~ 317 (998)
..-+|+||++... ...+.+...+.....+.+||.++....+.... .....+++.+++.+
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 2458999999653 11112222222333456777777654442211 12457899999999
Q ss_pred HHHHHHHHhhC
Q 001897 318 EAWQLFSQNAG 328 (998)
Q Consensus 318 ~~~~lf~~~~~ 328 (998)
+-.+++.+.+.
T Consensus 200 el~~I~~~~l~ 210 (287)
T CHL00181 200 ELLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHHH
Confidence 99999888774
No 142
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.0034 Score=76.26 Aligned_cols=178 Identities=14% Similarity=0.032 Sum_probs=100.1
Q ss_pred ccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhccc-----c--------------CCCCeEEEEE
Q 001897 157 QTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSS-----A--------------HRSGMVIWAT 216 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~-----~--------------~~f~~~~wv~ 216 (998)
..|.+..++.|..++..+++. .+.++|+.|+||||+|+.+.+.+..... + .+++ ++++.
T Consensus 17 iiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~eid 95 (824)
T PRK07764 17 VIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTEID 95 (824)
T ss_pred hcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEEec
Confidence 345556667777888777665 5789999999999999999887643210 0 1122 22332
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEE-Ee
Q 001897 217 VSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKII-LT 293 (998)
Q Consensus 217 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ii-vT 293 (998)
......+.++ .++...+...-...++-++|||+++... ..+.|...+-.-...+.+| +|
T Consensus 96 aas~~~Vd~i------------------R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 96 AASHGGVDDA------------------RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred ccccCCHHHH------------------HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 2222122221 1111111111122335578899998762 3334433332222344444 55
Q ss_pred cCChHHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 294 SRSLEVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 294 tR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
|....+... .+....|++..++.++..+.+.+.+..... ..-.+....|++.++|.+..+
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 554444432 234568999999999988888876633221 122345678899999977443
No 143
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.41 E-value=0.00089 Score=82.69 Aligned_cols=158 Identities=13% Similarity=0.152 Sum_probs=91.1
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCC-CCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001897 156 HQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHR-SGMVIWATVSKELNLRWVQAQIAERL 234 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l 234 (998)
+..||+++++.+++.|......-+.++|++|+|||++|+.++..+....+... -+..+|. + +...++.
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a------ 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA------ 248 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc------
Confidence 44578899999999998776667789999999999999999988753322111 1234442 1 2221111
Q ss_pred cCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc---------cccccCCCCCCCCCcEEEEecCChHHHhh---
Q 001897 235 NLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID---------LDSLGVPQPEDHGGSKIILTSRSLEVCMA--- 302 (998)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~---------~~~l~~~l~~~~~gs~iivTtR~~~v~~~--- 302 (998)
+.. .....+.....+.+.+...++.+|++|++..... ...+..+....+ .-++|.+|...+....
T Consensus 249 g~~--~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~ 325 (821)
T CHL00095 249 GTK--YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEK 325 (821)
T ss_pred cCC--CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhc
Confidence 111 1123344444455555445589999999964321 111211111111 2456666655443221
Q ss_pred ----cCCCeEEEccCCChHHHHHHHHHhh
Q 001897 303 ----MKTDVEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 303 ----~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (998)
......+.+...+.++...++....
T Consensus 326 D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 326 DPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred CHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 1223467888889999888876543
No 144
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.41 E-value=0.002 Score=72.28 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=81.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+-|.++|++|+|||++|+++++.... . |+.++ ..++.... .+ ........+.+.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~-----~-----~i~v~----~~~l~~~~---~g-------~~~~~i~~~f~~ 219 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNA-----T-----FIRVV----GSELVQKF---IG-------EGARLVRELFEL 219 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCC-----C-----EEEee----hHHHhHhh---cc-------chHHHHHHHHHH
Confidence 3567899999999999999999986431 1 22221 11111111 11 011122233333
Q ss_pred HHcCCeEEEEEcccccccc----------------cccccCCCC--CCCCCcEEEEecCChHHHh-hc----CCCeEEEc
Q 001897 255 LLRESNFLLILDDVWETID----------------LDSLGVPQP--EDHGGSKIILTSRSLEVCM-AM----KTDVEVRV 311 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~iivTtR~~~v~~-~~----~~~~~~~l 311 (998)
.......+|+|||++.... +..+...+. ....+..||.||...+... .+ .-+..+++
T Consensus 220 a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v 299 (389)
T PRK03992 220 AREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEV 299 (389)
T ss_pred HHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEE
Confidence 3334478999999975410 011111111 1123566777776543221 11 12457899
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCC
Q 001897 312 DLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGL 350 (998)
Q Consensus 312 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 350 (998)
.+.+.++-.++|+.+.......... ....+++.+.|.
T Consensus 300 ~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 300 PLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred CCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCC
Confidence 9999999999999887443222211 134566666664
No 145
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=5.3e-05 Score=89.92 Aligned_cols=105 Identities=24% Similarity=0.399 Sum_probs=53.7
Q ss_pred CCccEEEcCCCCCC--CCChhhh-cccCCceEeecCCCCCCC-Cc-cccCCCCCCeeeecCCCCcccChhhhcCcCCcEE
Q 001897 561 PALRVLNLSGTRIH--SLPLSLL-QLHNCRALLLRDCFYLED-LP-ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRL 635 (998)
Q Consensus 561 ~~Lr~L~l~~~~~~--~lp~~i~-~l~~L~~L~L~~~~~~~~-lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 635 (998)
.+|++||++|...- .=|..++ .||.|+.|.+++=..... .. -..++++|..||+|+|+++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 35666666654321 1112232 356666666655221111 11 245566666667766666666 666666666666
Q ss_pred eCCCCcccccccccccCCCCCccEEEcccCc
Q 001897 636 NLSRTHYLKKIQAGIICRLSSLEILDMTLSD 666 (998)
Q Consensus 636 ~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~ 666 (998)
.+.+-.+.....-..+.+|++|++||++...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 6655432211111125566677777666543
No 146
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0037 Score=73.90 Aligned_cols=179 Identities=10% Similarity=0.053 Sum_probs=103.4
Q ss_pred cccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhcc------------------ccCCCCeEEEEE
Q 001897 156 HQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDS------------------SAHRSGMVIWAT 216 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~------------------~~~~f~~~~wv~ 216 (998)
...|.+..++.|..++..+++. .+.++|+.|+||||+|+.+...+.... ...+|+. ..+.
T Consensus 18 ~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ld 96 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HELD 96 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEec
Confidence 3445566677788888777665 578999999999999999888653211 1123442 2333
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEE-Ee
Q 001897 217 VSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKII-LT 293 (998)
Q Consensus 217 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ii-vT 293 (998)
.+....+.++.. +++++. ..-..+++-++|+|++.... ..+.+...+..-..++.+| +|
T Consensus 97 ~~~~~~vd~Ir~-li~~~~-----------------~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 97 AASNNSVDDIRN-LIEQVR-----------------IPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred ccccCCHHHHHH-HHHHHh-----------------hCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 333222322222 212211 00011235688999987653 3444433332222345544 45
Q ss_pred cCChHHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 294 SRSLEVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 294 tR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
|+...+... .+....+++.++++++....+.+.+..... ..-.+.+..|++.++|-.--+
T Consensus 159 t~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 159 TEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 554544432 233467999999999999888887743322 122346788999999966544
No 147
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.40 E-value=4.1e-06 Score=93.88 Aligned_cols=126 Identities=30% Similarity=0.332 Sum_probs=84.3
Q ss_pred cceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc--cccCCCCCCeeee
Q 001897 537 ETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP--ALGGLTKLQDLDL 614 (998)
Q Consensus 537 ~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~i~~l~~L~~L~l 614 (998)
.|.+.+++.| .+..+.++ +.-++.|+.|||++|++...- .+..|++|++|||+.|. +..+| +...+. |+.|.+
T Consensus 165 ~L~~a~fsyN-~L~~mD~S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDES-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchh-hHHhHHHH-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeee
Confidence 3444444444 33333333 355777888888888887764 77788888888888865 55666 344444 888888
Q ss_pred cCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 615 SATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 615 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
++|.+++| .++.+|++|++||+++|-....-....++.|..|..|.+.+|.+-
T Consensus 240 rnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88888877 578888888888888875322111122667778888888888763
No 148
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.39 E-value=0.014 Score=59.40 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=43.6
Q ss_pred EEecCChHHHhhc--CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHH
Q 001897 291 ILTSRSLEVCMAM--KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGT 359 (998)
Q Consensus 291 ivTtR~~~v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 359 (998)
=-|||.-.+..-. .-+.+.+++.-+.+|-.+...+.+..-.. .--++-+.+|+++..|-|--..-+-+
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 3588865443211 12346788888999999999888832211 12245688999999999965544333
No 149
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.39 E-value=0.0022 Score=70.40 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=76.8
Q ss_pred cccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001897 156 HQTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERL 234 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 234 (998)
...+.++..+.+..++..++. .++.++|++|+||||+|+.+++.... ....++.+. .....+...+.+ +
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~--------~~~~i~~~~-~~~~~i~~~l~~-~ 91 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA--------EVLFVNGSD-CRIDFVRNRLTR-F 91 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc--------cceEeccCc-ccHHHHHHHHHH-H
Confidence 344555667777777766654 56667999999999999999886421 123444443 222211111111 0
Q ss_pred cCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--c-cccccCCCCCCCCCcEEEEecCChHH-Hh-hcCCCeEE
Q 001897 235 NLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--D-LDSLGVPQPEDHGGSKIILTSRSLEV-CM-AMKTDVEV 309 (998)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~-~~~l~~~l~~~~~gs~iivTtR~~~v-~~-~~~~~~~~ 309 (998)
. ... .... .+-++|+||++... + ...+...+.....++++|+||....- .. ..+....+
T Consensus 92 ~-------------~~~--~~~~-~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 92 A-------------STV--SLTG-GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred H-------------Hhh--cccC-CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 0 000 0112 35678999997551 1 12222212222356788888864321 11 11122456
Q ss_pred EccCCChHHHHHHHHH
Q 001897 310 RVDLLNDDEAWQLFSQ 325 (998)
Q Consensus 310 ~l~~L~~~~~~~lf~~ 325 (998)
.+...+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7777777777666543
No 150
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.39 E-value=0.0027 Score=73.34 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=91.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLL 256 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 256 (998)
..+.|+|..|+|||.|++.+++..... ..-..+++++. .++..++...+... . ...+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~---~~g~~V~Yita------eef~~el~~al~~~-----~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL---YPGTRVRYVSS------EEFTNEFINSIRDG-----K----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh---CCCCeEEEeeH------HHHHHHHHHHHHhc-----c----HHHHHHHhh
Confidence 458999999999999999999976421 11123455543 44444444433210 1 112233332
Q ss_pred cCCeEEEEEccccccc---ccc-cccCCCC-CCCCCcEEEEecCC---------hHHHhhcCCCeEEEccCCChHHHHHH
Q 001897 257 RESNFLLILDDVWETI---DLD-SLGVPQP-EDHGGSKIILTSRS---------LEVCMAMKTDVEVRVDLLNDDEAWQL 322 (998)
Q Consensus 257 ~~~r~LlVlDdv~~~~---~~~-~l~~~l~-~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l 322 (998)
+ -=+|||||+.... .|. .+...+. -...|..|||||+. ..+...+...-.++++..+.+.-.++
T Consensus 377 ~--~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 377 E--MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred c--CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 2 3488999996542 111 1111111 01235568888874 23445667788999999999999999
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 323 FSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 323 f~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
+.+++..... .--+++..-|++++.+..
T Consensus 455 L~kka~~r~l-~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 455 LRKKAVQEQL-NAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHhccCCH
Confidence 9998854322 222566777777776543
No 151
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0051 Score=72.60 Aligned_cols=178 Identities=14% Similarity=0.107 Sum_probs=97.3
Q ss_pred ccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhcccc--------------CCCCeEEEEEeCCCC
Q 001897 157 QTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSA--------------HRSGMVIWATVSKEL 221 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--------------~~f~~~~wv~~s~~~ 221 (998)
..|.+..+..+..++..+++. .+.++|+.|+||||+|+.++..+-..... .+++ ++++......
T Consensus 20 IiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieidaasn~ 98 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDAASNN 98 (725)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEeccccC
Confidence 335556667777777776654 56799999999999999998765321100 0111 1112111111
Q ss_pred CHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCc-EEEEecCChH
Q 001897 222 NLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGS-KIILTSRSLE 298 (998)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs-~iivTtR~~~ 298 (998)
.+. ....+...+...-..+++-++|+|++.... .+..+...+-...... -|++|++...
T Consensus 99 ~vd------------------~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 99 GVD------------------EIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred CHH------------------HHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 111 111222222111112346688999987652 3333433222112233 3556665555
Q ss_pred HHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 299 VCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 299 v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
+.. ..+....+++.+++.++..+.+...+..... ..-.+.+..|++.++|-+--+
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI-SYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 543 2333468999999999999888876632221 112345778999999866433
No 152
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.0023 Score=72.67 Aligned_cols=152 Identities=11% Similarity=0.152 Sum_probs=88.7
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
..-+.|+|+.|+|||+|++.+++.+... ...+++++. ..+...+...+... . ...+++.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-----~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES-----GGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHc
Confidence 3568899999999999999999987532 123455542 34444555444311 1 11222222
Q ss_pred HcCCeEEEEEcccccccc--c--ccccCCCCC-CCCCcEEEEecCC---------hHHHhhcCCCeEEEccCCChHHHHH
Q 001897 256 LRESNFLLILDDVWETID--L--DSLGVPQPE-DHGGSKIILTSRS---------LEVCMAMKTDVEVRVDLLNDDEAWQ 321 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~~~--~--~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~ 321 (998)
. ..-+|++||+..... + +.+...+.. ...|..||+||.. ..+..++..+..+.+.+++.++-.+
T Consensus 201 ~--~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 201 R--NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred c--cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 2 245889999865421 1 111111110 0135568888853 2333455667889999999999999
Q ss_pred HHHHhhCCCCCCCCchHHHHHHHHHccCC
Q 001897 322 LFSQNAGVAASKDPIKPFAQAIARECKGL 350 (998)
Q Consensus 322 lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 350 (998)
++.+++.... ..--+++..-|+..+.|.
T Consensus 279 iL~~k~~~~~-~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 279 FLERKAEALS-IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHhcCCC
Confidence 9998884322 112245555666666643
No 153
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.36 E-value=0.00011 Score=73.20 Aligned_cols=82 Identities=28% Similarity=0.390 Sum_probs=47.9
Q ss_pred CCCccEEEcCCCCCC-----CCChhhhcccCCceEeecCCCCCC---C--------CccccCCCCCCeeeecCCCCc-cc
Q 001897 560 FPALRVLNLSGTRIH-----SLPLSLLQLHNCRALLLRDCFYLE---D--------LPALGGLTKLQDLDLSATSIR-EL 622 (998)
Q Consensus 560 l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~---~--------lp~i~~l~~L~~L~l~~~~l~-~l 622 (998)
+..+..++||||.|. .+...|.+-.+|+.-+++.-.... . +|.+-+|++|+..+||.|.+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 556666777777665 233445555666666665421110 1 224567777888888777655 44
Q ss_pred Chh----hhcCcCCcEEeCCCCc
Q 001897 623 PRG----MENLSNLRRLNLSRTH 641 (998)
Q Consensus 623 p~~----i~~L~~L~~L~l~~~~ 641 (998)
|+. |.+-+.|.||.+++|.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC
Confidence 443 4445677777777765
No 154
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.01 Score=59.64 Aligned_cols=180 Identities=19% Similarity=0.236 Sum_probs=105.9
Q ss_pred CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEe-CCCCCHHHHHHHHHHHhcCCcch--hhhHHHHHH
Q 001897 173 CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATV-SKELNLRWVQAQIAERLNLDVKM--EESMQRLGI 249 (998)
Q Consensus 173 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~ 249 (998)
.++-+++.++|.-|.|||.+.++....+..+ .++-|.+ ....+...+...|+..+..+... ....+....
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d-------~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~ 120 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED-------QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDR 120 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC-------ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHH
Confidence 3445799999999999999999665543222 1222333 34456778888888888763322 223344445
Q ss_pred HHHHHHHcCCe-EEEEEccccccc--ccccccCC--CCCCCCC-cEEEEecCC--------hHHHhhcC-CCeEEEccCC
Q 001897 250 RLHERLLRESN-FLLILDDVWETI--DLDSLGVP--QPEDHGG-SKIILTSRS--------LEVCMAMK-TDVEVRVDLL 314 (998)
Q Consensus 250 ~l~~~l~~~~r-~LlVlDdv~~~~--~~~~l~~~--l~~~~~g-s~iivTtR~--------~~v~~~~~-~~~~~~l~~L 314 (998)
.+.....+++| ..++.|+..... .++.+... +-....+ -+|+..-.. ......-. ....|++.|+
T Consensus 121 ~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 121 ELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred HHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 56666667778 999999987652 22222211 1111111 123322221 11111111 1223899999
Q ss_pred ChHHHHHHHHHhhCCCCCCCC--chHHHHHHHHHccCChHHHHHHHH
Q 001897 315 NDDEAWQLFSQNAGVAASKDP--IKPFAQAIARECKGLPLAIITMGT 359 (998)
Q Consensus 315 ~~~~~~~lf~~~~~~~~~~~~--~~~~~~~i~~~c~glPlai~~~~~ 359 (998)
+.++...++..+......+.+ -.+....|..+..|.|.+|..++.
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999999888744332222 235567889999999999977654
No 155
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.33 E-value=0.0012 Score=69.52 Aligned_cols=160 Identities=19% Similarity=0.229 Sum_probs=98.5
Q ss_pred chHHHHHHHHHhhcCCC---ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001897 159 TASKTLGKLMKLLDCDE---IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 159 ~~~~~~~~l~~~l~~~~---~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (998)
+|+..+..+..++.+.. +..|-|+|..|.|||.+.+++.+... -..+|+++-+.++.+.+..+|+.+.+
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--------~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN--------LENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC--------CcceeeehHHhccHHHHHHHHHHHhc
Confidence 45667777777776543 34558999999999999999988642 23689999999999999999999985
Q ss_pred -CCcchh------hhHHHHHHHHHH--HHH-cCCeEEEEEcccccccccccccCC----CC--CCCCCcEEEEecCChHH
Q 001897 236 -LDVKME------ESMQRLGIRLHE--RLL-RESNFLLILDDVWETIDLDSLGVP----QP--EDHGGSKIILTSRSLEV 299 (998)
Q Consensus 236 -~~~~~~------~~~~~~~~~l~~--~l~-~~~r~LlVlDdv~~~~~~~~l~~~----l~--~~~~gs~iivTtR~~~v 299 (998)
.+.+.. ++..+....+.+ ... .++.++||||+++...+.+...-+ +. ...+.. +|+++-..--
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~e 160 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSCE 160 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEeccccH
Confidence 222211 122223333333 111 235899999999887665443111 00 112233 3444432211
Q ss_pred ---HhhcCCC--eEEEccCCChHHHHHHHHHhh
Q 001897 300 ---CMAMKTD--VEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 300 ---~~~~~~~--~~~~l~~L~~~~~~~lf~~~~ 327 (998)
...+++. .++....-+.+|...++.+.-
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 1123433 356677788888888886543
No 156
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.0051 Score=67.47 Aligned_cols=133 Identities=17% Similarity=0.151 Sum_probs=81.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
....+.|+|..|.|||.|++++.+..... ......+.+ +.......++..+.. ....++++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~-----~~~a~v~y~----~se~f~~~~v~a~~~---------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN-----GPNARVVYL----TSEDFTNDFVKALRD---------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh-----CCCceEEec----cHHHHHHHHHHHHHh---------hhHHHHHHh
Confidence 46789999999999999999999976432 221122333 233334444433321 122334444
Q ss_pred HHcCCeEEEEEccccccccc---c-cccCCCC-CCCCCcEEEEecCC---------hHHHhhcCCCeEEEccCCChHHHH
Q 001897 255 LLRESNFLLILDDVWETIDL---D-SLGVPQP-EDHGGSKIILTSRS---------LEVCMAMKTDVEVRVDLLNDDEAW 320 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~~---~-~l~~~l~-~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~ 320 (998)
. . -=++++||++-.... + .+-..+. -...|-.||+|++. ..+..++..+-.+++.+.+.+...
T Consensus 174 y--~-~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 174 Y--S-LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred h--c-cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 4 1 348899999754221 1 1111111 01234489999963 455567778889999999999999
Q ss_pred HHHHHhhC
Q 001897 321 QLFSQNAG 328 (998)
Q Consensus 321 ~lf~~~~~ 328 (998)
..+.+++.
T Consensus 251 aiL~kka~ 258 (408)
T COG0593 251 AILRKKAE 258 (408)
T ss_pred HHHHHHHH
Confidence 99998774
No 157
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.31 E-value=0.0015 Score=66.86 Aligned_cols=188 Identities=15% Similarity=0.117 Sum_probs=106.5
Q ss_pred cccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEE-EEeCCCCCHHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIW-ATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~i~~ 232 (998)
+....+.+..+.-|.+.+.....++...+|++|.|||+-|..++..+-. .+.|.+++. .++|....+.-+-.++
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~---~~~~~~rvl~lnaSderGisvvr~Ki-- 109 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC---EQLFPCRVLELNASDERGISVVREKI-- 109 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC---ccccccchhhhcccccccccchhhhh--
Confidence 3444455666777778877778899999999999999999998876543 244555443 3445443332111111
Q ss_pred HhcCCcchhhhHHHHHHHHHHHH-HcCCe-EEEEEcccccc--cccccccCCCCCCCCCcEEE-EecCChHHHh-hcCCC
Q 001897 233 RLNLDVKMEESMQRLGIRLHERL-LRESN-FLLILDDVWET--IDLDSLGVPQPEDHGGSKII-LTSRSLEVCM-AMKTD 306 (998)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l-~~~~r-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vTtR~~~v~~-~~~~~ 306 (998)
.+...+........ ..-+. -.+|||+++.. ..|..+....-.....++.| ||+--..+-. ..+--
T Consensus 110 ---------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 110 ---------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred ---------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 01111100000000 00123 47889999876 56777655554444455544 4443222211 11222
Q ss_pred eEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCC-hHHHHH
Q 001897 307 VEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGL-PLAIIT 356 (998)
Q Consensus 307 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~ 356 (998)
..|+.++|.+++...-+...+..+..+- ..+..+.|++.++|- --|+.+
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-d~~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDI-DDDALKLIAKISDGDLRRAITT 230 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 4588899999988888888874433222 235567889999883 334433
No 158
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.29 E-value=0.001 Score=73.58 Aligned_cols=104 Identities=14% Similarity=0.208 Sum_probs=64.9
Q ss_pred hHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcc
Q 001897 160 ASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVK 239 (998)
Q Consensus 160 ~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 239 (998)
.++.++.++..+... +.|.++|++|+|||++|+.+++.+.. ...|+.+.||++++..+..++...+.-. +....
T Consensus 180 ~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~---~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy~ 253 (459)
T PRK11331 180 PETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTG---EKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGFR 253 (459)
T ss_pred CHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcC---CcccceeeEEeecccccHHHHhcccCCC-CCCeE
Confidence 356677777777643 57788999999999999999987642 2457888999999988877765433110 11110
Q ss_pred hhhhHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 240 MEESMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 240 ~~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
.... ...+-+..... ..+++++|+|++...
T Consensus 254 ~~~G--~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 254 RKDG--IFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred ecCc--hHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0000 01111111111 235899999998765
No 159
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0096 Score=68.37 Aligned_cols=183 Identities=10% Similarity=0.040 Sum_probs=98.8
Q ss_pred cccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhcccc----------------CCCCeEEEEEeC
Q 001897 156 HQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSA----------------HRSGMVIWATVS 218 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~----------------~~f~~~~wv~~s 218 (998)
...|.+..+..+..++..+++. .+.++|+.|+||||+|+.++..+...... +.|.-.+++..+
T Consensus 17 diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaa 96 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAA 96 (486)
T ss_pred HccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCc
Confidence 3445556677777787776554 56789999999999999998765321000 011112233222
Q ss_pred CCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEE-EecC
Q 001897 219 KELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKII-LTSR 295 (998)
Q Consensus 219 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ii-vTtR 295 (998)
....+.++ ......+...-..+++-++|+|+++... ..+.+...+........+| .||+
T Consensus 97 s~~gvd~i------------------r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~ 158 (486)
T PRK14953 97 SNRGIDDI------------------RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTE 158 (486)
T ss_pred cCCCHHHH------------------HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 22111111 1111111111112346799999987552 2333333332222234444 4544
Q ss_pred ChHHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 296 SLEVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 296 ~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
...+.. .......+.+.+++.++....+.+.+..... ..-.+.+..|++.++|.+..+...
T Consensus 159 ~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 159 YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 433332 1223457899999999998888887633221 122355678888999976654443
No 160
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.24 E-value=0.0069 Score=67.59 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=80.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+-|.++|++|.|||++|+.+++.... .| +.+.. ..+.... .+ .. ......+...
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~-----~f---i~i~~------s~l~~k~---~g------e~-~~~lr~lf~~ 233 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTA-----TF---IRVVG------SEFVQKY---LG------EG-PRMVRDVFRL 233 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCC-----CE---EEEeh------HHHHHHh---cc------hh-HHHHHHHHHH
Confidence 4577999999999999999999986421 12 22211 1111111 11 01 1122233333
Q ss_pred HHcCCeEEEEEcccccccc----------------cccccCCCC--CCCCCcEEEEecCChHHH-hh-c---CCCeEEEc
Q 001897 255 LLRESNFLLILDDVWETID----------------LDSLGVPQP--EDHGGSKIILTSRSLEVC-MA-M---KTDVEVRV 311 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~iivTtR~~~v~-~~-~---~~~~~~~l 311 (998)
.......+|+||+++.... +..+...+. ....+..||.||...+.. .. . .-+..+++
T Consensus 234 A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~ 313 (398)
T PTZ00454 234 ARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 313 (398)
T ss_pred HHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEe
Confidence 3444589999999864310 011111111 122356778887744332 11 1 23457889
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 312 DLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 312 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
...+.++..++|..+........+. ...++++...|.-
T Consensus 314 ~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 314 PLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 9899999888888776432222211 1345666666643
No 161
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.24 E-value=0.0025 Score=71.38 Aligned_cols=133 Identities=22% Similarity=0.151 Sum_probs=81.5
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchh
Q 001897 162 KTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKME 241 (998)
Q Consensus 162 ~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 241 (998)
..+.++.+.+..... ++.|.|+-++||||+++.+...... . .+++..-+...-..-..+..
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~----~----~iy~~~~d~~~~~~~l~d~~---------- 84 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLE----E----IIYINFDDLRLDRIELLDLL---------- 84 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCc----c----eEEEEecchhcchhhHHHHH----------
Confidence 345556665554444 9999999999999999777654321 1 45554432211111111111
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHH-----h-hcCCCeEEEccCCC
Q 001897 242 ESMQRLGIRLHERLLRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVC-----M-AMKTDVEVRVDLLN 315 (998)
Q Consensus 242 ~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-----~-~~~~~~~~~l~~L~ 315 (998)
......... ++..++||.|....+|......+.+.++. +|++|+-+..+. . ..+-...+++.||+
T Consensus 85 -------~~~~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 85 -------RAYIELKER-EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred -------HHHHHhhcc-CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 111111111 57899999999999998776666666666 788888765442 2 22345678999999
Q ss_pred hHHHHHH
Q 001897 316 DDEAWQL 322 (998)
Q Consensus 316 ~~~~~~l 322 (998)
..|-..+
T Consensus 156 F~Efl~~ 162 (398)
T COG1373 156 FREFLKL 162 (398)
T ss_pred HHHHHhh
Confidence 8887654
No 162
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0079 Score=71.11 Aligned_cols=192 Identities=15% Similarity=0.046 Sum_probs=99.4
Q ss_pred ccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001897 157 QTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (998)
..|.+..+..|..++..+++ ..+.++|+.|+||||+|+.++..+....... . ....++.-+..+.+....+
T Consensus 18 liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~-------~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 18 LVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-P-------TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred ccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-C-------CCCCCcccHHHHHHhcCCC
Confidence 33455666677777766654 5788999999999999999988764321000 0 0011111122222222211
Q ss_pred CCc-----ch---hhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEE-EEecCChHHHhh-c
Q 001897 236 LDV-----KM---EESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKI-ILTSRSLEVCMA-M 303 (998)
Q Consensus 236 ~~~-----~~---~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~i-ivTtR~~~v~~~-~ 303 (998)
.+. .. .+...+....+...-..+++-++|+|+++... ..+.+...+-.-.....+ ++|+....+... .
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 110 00 00111111111110011235688999998652 344443333222223434 455544444322 2
Q ss_pred CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 304 KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 304 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
+....+++..++.++....+.+.+...... --.+.+..|++.++|.+..+...
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 234578888999998888887766432211 12355778999999977655433
No 163
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.22 E-value=0.0098 Score=69.48 Aligned_cols=181 Identities=12% Similarity=0.063 Sum_probs=100.0
Q ss_pred cccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhcccc-----------------CCCCeEEEEEe
Q 001897 156 HQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSA-----------------HRSGMVIWATV 217 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-----------------~~f~~~~wv~~ 217 (998)
...|.+..+..+..++..+++. .+.++|+.|+||||+|+.+++.+-..... .+++. +++..
T Consensus 17 diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv-~~idg 95 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV-IEIDG 95 (563)
T ss_pred HccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-EEecC
Confidence 3345556667788887776655 57899999999999999998876422100 11221 11211
Q ss_pred CCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEec-
Q 001897 218 SKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTS- 294 (998)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt- 294 (998)
.....+.++ ......+...-..+++-++|+|++.... .++.+...+-.-.....+|.+|
T Consensus 96 as~~~vddI------------------r~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 96 ASNTSVQDV------------------RQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred cccCCHHHH------------------HHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 111111111 1111111111112346689999987653 3444444433223345555444
Q ss_pred CChHHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 295 RSLEVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 295 R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
....+-.. .+....++..+++.++-.+.+.+.+..... .--++.+..|++.++|.+-.+..
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 43444322 223457899999999988888877633221 22345677889999997754433
No 164
>PRK08118 topology modulation protein; Reviewed
Probab=97.21 E-value=0.00022 Score=69.44 Aligned_cols=36 Identities=33% Similarity=0.649 Sum_probs=28.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEE
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIW 214 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~w 214 (998)
+.|.|+|++|+||||||+.+++.+.. ..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~--~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI--PVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC--Cceecchhhc
Confidence 46899999999999999999997532 2345777776
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.20 E-value=0.0018 Score=78.00 Aligned_cols=158 Identities=15% Similarity=0.180 Sum_probs=88.6
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhcccc-CCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001897 156 HQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSA-HRSGMVIWATVSKELNLRWVQAQIAERL 234 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l 234 (998)
...|+++++.++++.|......-+.++|++|+|||++|+.++..+....+- ...+..+|.. ++..+ +.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--
Confidence 345678889999988877655666789999999999999999876432211 1123444421 12111 10
Q ss_pred cCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc----------ccccccCCCCCCCCCcEEEEecCChHHHhhc-
Q 001897 235 NLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI----------DLDSLGVPQPEDHGGSKIILTSRSLEVCMAM- 303 (998)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~- 303 (998)
+ .......+.....+...+...++.+|++|++.... +...+..++...+ .-++|-+|...+.....
T Consensus 256 G--~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~ 332 (758)
T PRK11034 256 G--TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFE 332 (758)
T ss_pred c--cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhh
Confidence 1 11111233333444444444457899999997531 1111122221111 23455555443322111
Q ss_pred ------CCCeEEEccCCChHHHHHHHHHhh
Q 001897 304 ------KTDVEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 304 ------~~~~~~~l~~L~~~~~~~lf~~~~ 327 (998)
.--..+.++..+.+++.+++....
T Consensus 333 ~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 333 KDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112478999999999999988665
No 166
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00017 Score=72.84 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=35.8
Q ss_pred hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccccccc
Q 001897 753 LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNI 828 (998)
Q Consensus 753 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 828 (998)
.++|+.++.+..|+--+.. .-.....+|.+..|.|+.+.+-. +........||.|.-|.++++|.+..+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s----~ek~se~~p~~~~LnL~~~~ids---wasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTES----SEKGSEPFPSLSCLNLGANNIDS---WASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccchheeeecCcccchh----hcccCCCCCcchhhhhccccccc---HHHHHHHcCCchhheeeccCCcccccc
Confidence 4667777766665321111 11122345556666666655432 111234455777777777777665554
No 167
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.19 E-value=0.0051 Score=69.09 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=80.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+-|.++|++|+|||++|+.+++.... .| +.+..+. +.... .+ .. ......+.+.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~-----~f---i~V~~se------L~~k~---~G------e~-~~~vr~lF~~ 271 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSA-----TF---LRVVGSE------LIQKY---LG------DG-PKLVRELFRV 271 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC-----CE---EEEecch------hhhhh---cc------hH-HHHHHHHHHH
Confidence 3457889999999999999999986431 22 2222111 11110 11 01 1112223333
Q ss_pred HHcCCeEEEEEcccccccc----------------cccccCCCC--CCCCCcEEEEecCChHHHh-hc----CCCeEEEc
Q 001897 255 LLRESNFLLILDDVWETID----------------LDSLGVPQP--EDHGGSKIILTSRSLEVCM-AM----KTDVEVRV 311 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~iivTtR~~~v~~-~~----~~~~~~~l 311 (998)
.......+|+||+++.... +..+...+. ....+.+||.||...+... .+ .-...+++
T Consensus 272 A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~ 351 (438)
T PTZ00361 272 AEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEF 351 (438)
T ss_pred HHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEe
Confidence 3334578999999864310 000110110 1123567888887544432 21 22457899
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 312 DLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 312 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
...+.++..++|..+........+. ....++..+.|+-
T Consensus 352 ~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~s 389 (438)
T PTZ00361 352 PNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELS 389 (438)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCC
Confidence 9999999999999887443222211 1345565665543
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.19 E-value=0.0007 Score=63.40 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHh
Q 001897 179 IGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 179 i~I~G~gG~GKTtLa~~v~~~~ 200 (998)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999975
No 169
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.17 E-value=0.0009 Score=63.49 Aligned_cols=90 Identities=24% Similarity=0.096 Sum_probs=48.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLL 256 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 256 (998)
..+.|+|++|+||||+|+.++..+... ...++++..+........... ........ ...........+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP-----GGGVIYIDGEDILEEVLDQLL-LIIVGGKK-ASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC-----CCCEEEECCEEccccCHHHHH-hhhhhccC-CCCCHHHHHHHHHHHHH
Confidence 578999999999999999998865322 123555655443322222211 00111011 11111222233444444
Q ss_pred cCCeEEEEEcccccccc
Q 001897 257 RESNFLLILDDVWETID 273 (998)
Q Consensus 257 ~~~r~LlVlDdv~~~~~ 273 (998)
..+..++++|++.....
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 33248999999987743
No 170
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.10 E-value=0.0065 Score=75.44 Aligned_cols=160 Identities=13% Similarity=0.131 Sum_probs=89.0
Q ss_pred cccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccC-CCCeEEEEEeCCCCCHHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAH-RSGMVIWATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~ 232 (998)
+.+..|++.++.+++..|......-+.++|++|+|||++|+.++.++....+.. .....+|.- ++..+..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~a---- 242 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALIA---- 242 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHhh----
Confidence 344567888999999988777667777999999999999999988764322111 112333321 1111110
Q ss_pred HhcCCcchhhhHHHHHHHHHHHHH-cCCeEEEEEcccccccc---------cccccCCCCCCCCCcEEEEecCChHHHhh
Q 001897 233 RLNLDVKMEESMQRLGIRLHERLL-RESNFLLILDDVWETID---------LDSLGVPQPEDHGGSKIILTSRSLEVCMA 302 (998)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~~---------~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 302 (998)
+ .......+.....+...+. .+++.+|++|++..... ...+..+....+ .-++|-+|...+....
T Consensus 243 --~--~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~~ 317 (852)
T TIGR03346 243 --G--AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRKY 317 (852)
T ss_pred --c--chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHHH
Confidence 0 0001122333334444443 23589999999975421 111222221112 2345555554433111
Q ss_pred c-------CCCeEEEccCCChHHHHHHHHHhh
Q 001897 303 M-------KTDVEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 303 ~-------~~~~~~~l~~L~~~~~~~lf~~~~ 327 (998)
+ .--..+.+...+.++..+++....
T Consensus 318 ~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 318 IEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 122467889889999999887665
No 171
>PHA00729 NTP-binding motif containing protein
Probab=97.10 E-value=0.0024 Score=64.18 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=28.3
Q ss_pred HHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 166 KLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 166 ~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++++.+...+...|.|.|.+|+||||||..+.+.+
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555666789999999999999999998864
No 172
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.08 E-value=0.0026 Score=74.47 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=32.7
Q ss_pred ccchHHHHHHHHHhhcC-----CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 157 QTTASKTLGKLMKLLDC-----DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+.++.++++..++.. ...+++.|+|++|+||||+++.++..+
T Consensus 86 l~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 86 LAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred hcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33445566667666653 234679999999999999999998864
No 173
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.021 Score=60.20 Aligned_cols=187 Identities=16% Similarity=0.211 Sum_probs=101.6
Q ss_pred cCCCCcccccchHHHHHHHHHhhc-------------CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEE
Q 001897 149 IPGPSIEHQTTASKTLGKLMKLLD-------------CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWA 215 (998)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~l~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv 215 (998)
.|.-++.+.-|-++.++++.+... -+..+-|.++|++|.|||-||++|+++-.. . |+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-----t-----FI 214 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-----T-----FI 214 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-----e-----EE
Confidence 344444444455666666555432 135678899999999999999999996322 2 23
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc----------------cccccC
Q 001897 216 TVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID----------------LDSLGV 279 (998)
Q Consensus 216 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~----------------~~~l~~ 279 (998)
.|.. .++.++. +| .-..+.+.+.+.-+.+....|.+|.++.... +-++..
T Consensus 215 rvvg----SElVqKY---iG-------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ 280 (406)
T COG1222 215 RVVG----SELVQKY---IG-------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLN 280 (406)
T ss_pred Eecc----HHHHHHH---hc-------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHH
Confidence 3321 1222221 12 1123444555555666789999998864310 111211
Q ss_pred CCC--CCCCCcEEEEecCChHHHh-----hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChH
Q 001897 280 PQP--EDHGGSKIILTSRSLEVCM-----AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPL 352 (998)
Q Consensus 280 ~l~--~~~~gs~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 352 (998)
.+. +....-|||..|...++.. --.-+..+++..-+.+.-.++|.-++..-...++.. -+.+++.|.|.--
T Consensus 281 qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd--~e~la~~~~g~sG 358 (406)
T COG1222 281 QLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD--LELLARLTEGFSG 358 (406)
T ss_pred hccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC--HHHHHHhcCCCch
Confidence 221 1123568998886554432 112345788886666666777877774322222111 3466777766542
Q ss_pred ----HHHHHHHHh
Q 001897 353 ----AIITMGTAM 361 (998)
Q Consensus 353 ----ai~~~~~~l 361 (998)
|+.+=|+++
T Consensus 359 AdlkaictEAGm~ 371 (406)
T COG1222 359 ADLKAICTEAGMF 371 (406)
T ss_pred HHHHHHHHHHhHH
Confidence 344445544
No 174
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.02 Score=62.22 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=85.6
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhcccc-----------------CCCCeEEEEEeC---CCCCHHHHHHHHHHHhc
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSA-----------------HRSGMVIWATVS---KELNLRWVQAQIAERLN 235 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-----------------~~f~~~~wv~~s---~~~~~~~~~~~i~~~l~ 235 (998)
...+.+.|+.|+||||+|+.++..+-..... .|-| ..|+.-. +...+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~id~---------- 90 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKVDQ---------- 90 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCHHH----------
Confidence 4568899999999999999998876432110 1112 1222111 1111111
Q ss_pred CCcchhhhHHHHHHHHHHH-HHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCCh-HHHh-hcCCCeEEE
Q 001897 236 LDVKMEESMQRLGIRLHER-LLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRSL-EVCM-AMKTDVEVR 310 (998)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~-l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~-~~~~~~~~~ 310 (998)
..++...+... ..++ +-++|+|+++... ..+.+...+-.-..++.+|+||.+. .+.. ..+-...+.
T Consensus 91 --------iR~l~~~~~~~~~~~~-~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~ 161 (328)
T PRK05707 91 --------VRELVSFVVQTAQLGG-RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQA 161 (328)
T ss_pred --------HHHHHHHHhhccccCC-CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeee
Confidence 11111122111 1233 4455779998762 3333332222212355566666543 3332 223345799
Q ss_pred ccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 311 VDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 311 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
+.+++.+++.+.+.+.... ...+.+..++..++|.|.....+
T Consensus 162 ~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 162 CPLPSNEESLQWLQQALPE-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999988765411 12334567889999999765544
No 175
>CHL00176 ftsH cell division protein; Validated
Probab=97.03 E-value=0.0075 Score=71.36 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=92.1
Q ss_pred cccccchHHHHHHHHHhhcCC---------CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCD---------EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLR 224 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 224 (998)
+.|.....+++.+++.++... ..+-|.++|++|+|||++|+.+++.... -++.++. .
T Consensus 185 v~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~----------p~i~is~----s 250 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV----------PFFSISG----S 250 (638)
T ss_pred ccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC----------CeeeccH----H
Confidence 334444456666676666532 2356899999999999999999886321 1222221 1
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc----------------ccccccCCCC--CCCC
Q 001897 225 WVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI----------------DLDSLGVPQP--EDHG 286 (998)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~ 286 (998)
++.... .+ .. ......+.+........+|+|||++... .+..+...+. ....
T Consensus 251 ~f~~~~---~g------~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 251 EFVEMF---VG------VG-AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHHh---hh------hh-HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 111110 01 00 1112223333344558999999996431 0111211111 1234
Q ss_pred CcEEEEecCChHHHh-hc----CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccC
Q 001897 287 GSKIILTSRSLEVCM-AM----KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKG 349 (998)
Q Consensus 287 gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g 349 (998)
+-.||.||...+... .+ .-+..+.+...+.++-.++++.++......+ ......+++.+.|
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPG 386 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCC
Confidence 556676776543322 11 2346788888899999999988875422111 2234567777776
No 176
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.99 E-value=0.0081 Score=74.25 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=87.5
Q ss_pred cccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCC-CCeE-EEEEeCCCCCHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHR-SGMV-IWATVSKELNLRWVQAQIA 231 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~-f~~~-~wv~~s~~~~~~~~~~~i~ 231 (998)
+.+..|++.++..+++.|......-+.++|.+|+|||++|+.+...+....+-.. .+.. +++.++. +..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a--- 247 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA--- 247 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh---
Confidence 3445678889999999888777777889999999999999999887643221111 1222 3333321 110
Q ss_pred HHhcCCcchhhhHHHHHHHHHHHH-HcCCeEEEEEcccccccc---------cccccCCCCCCCCCcEEEEecCChHHHh
Q 001897 232 ERLNLDVKMEESMQRLGIRLHERL-LRESNFLLILDDVWETID---------LDSLGVPQPEDHGGSKIILTSRSLEVCM 301 (998)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~l-~~~~r~LlVlDdv~~~~~---------~~~l~~~l~~~~~gs~iivTtR~~~v~~ 301 (998)
+ .......+.....+.+.+ ..+.+.+|++|++..... ...+..+....+ .-++|-||...+...
T Consensus 248 ---g--~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 248 ---G--AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQ 321 (857)
T ss_pred ---c--cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHH
Confidence 0 000112223333333332 224589999999876521 112222222222 345565555444311
Q ss_pred hc-------CCCeEEEccCCChHHHHHHHHHhh
Q 001897 302 AM-------KTDVEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 302 ~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 327 (998)
.. .--..+.+..-+.++...+++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11 111256677678899988886655
No 177
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.018 Score=63.33 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=87.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
....+.+.|++|+|||+||.+++.. ..|.++--++..+.....+ ..-... ..++.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-------S~FPFvKiiSpe~miG~sE---------------saKc~~-i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-------SDFPFVKIISPEDMIGLSE---------------SAKCAH-IKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-------cCCCeEEEeChHHccCccH---------------HHHHHH-HHHHHHH
Confidence 4567789999999999999999874 4576654443221111110 001111 1122222
Q ss_pred HHcCCeEEEEEcccccccccccccCCCC---------------CCCCCcEEEEecCChHHHhhcCC----CeEEEccCCC
Q 001897 255 LLRESNFLLILDDVWETIDLDSLGVPQP---------------EDHGGSKIILTSRSLEVCMAMKT----DVEVRVDLLN 315 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~~~~l~~~l~---------------~~~~gs~iivTtR~~~v~~~~~~----~~~~~l~~L~ 315 (998)
-.+..--.||+||+....+|..++..+. ..++.--|+-||....|...|+- ...|++..++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 2223367899999999888876665432 23333345567778888887763 3578888887
Q ss_pred h-HHHHHHHHHhhCCCCCCCCchHHHHHHHHHc
Q 001897 316 D-DEAWQLFSQNAGVAASKDPIKPFAQAIAREC 347 (998)
Q Consensus 316 ~-~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c 347 (998)
. ++..+.++..- .-.+.+...++.+...+|
T Consensus 674 ~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 6 77777776543 111233444555666555
No 178
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.018 Score=67.68 Aligned_cols=189 Identities=13% Similarity=0.063 Sum_probs=97.2
Q ss_pred ccccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001897 155 EHQTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAER 233 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 233 (998)
....|.+..+..+.+++..+++ ..+.++|+.|+||||+|+.+...+....... ..+++.-...+.|...
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~----------~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD----------GEPCNECEICKAITNG 85 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC----------CCCCCccHHHHHHhcC
Confidence 3344555666777777776654 4567899999999999999987653221000 0011111111222111
Q ss_pred hcCCc--------chhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcE-EEEecCChHHHh-
Q 001897 234 LNLDV--------KMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSK-IILTSRSLEVCM- 301 (998)
Q Consensus 234 l~~~~--------~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~-iivTtR~~~v~~- 301 (998)
...+. ...+...+....+...-..+++-++|+|+++... .+..+...+..-..... |+.||....+..
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 11000 0000111111111111112346688999997652 33344332222122333 445555444332
Q ss_pred hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 302 AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
..+....++..+++.++....+...+...... --.+....|++.++|-+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~-i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIE-YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 22234578899999999888888777432211 12455778888998876544
No 179
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.92 E-value=0.0013 Score=63.22 Aligned_cols=83 Identities=29% Similarity=0.392 Sum_probs=47.5
Q ss_pred hcCCCCccEEEcCCCCCCCCChhhhc-ccCCceEeecCCCCCC--CCccccCCCCCCeeeecCCCCcccChh----hhcC
Q 001897 557 LDGFPALRVLNLSGTRIHSLPLSLLQ-LHNCRALLLRDCFYLE--DLPALGGLTKLQDLDLSATSIRELPRG----MENL 629 (998)
Q Consensus 557 ~~~l~~Lr~L~l~~~~~~~lp~~i~~-l~~L~~L~L~~~~~~~--~lp~i~~l~~L~~L~l~~~~l~~lp~~----i~~L 629 (998)
|..++.|..|.+++|.|+.+-+.+.. +++|..|.|.+|+... ++..+..++.|++|.+-+|.++..+.. +..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 45566666666666666655444443 3456666666654322 222455666677777666666544332 5566
Q ss_pred cCCcEEeCCC
Q 001897 630 SNLRRLNLSR 639 (998)
Q Consensus 630 ~~L~~L~l~~ 639 (998)
++|+.||+.+
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 7777777654
No 180
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.91 E-value=0.032 Score=65.06 Aligned_cols=150 Identities=18% Similarity=0.149 Sum_probs=78.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
.+-+.++|++|+|||++|+.+++.... -++.++ ..++.... .+. .. .....+.+..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~----------~~~~i~----~~~~~~~~---~g~------~~-~~l~~~f~~a 143 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGV----------PFFSIS----GSDFVEMF---VGV------GA-SRVRDLFEQA 143 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCC----------Ceeecc----HHHHHHHH---hcc------cH-HHHHHHHHHH
Confidence 346889999999999999999876321 122222 11221111 010 11 1122233333
Q ss_pred HcCCeEEEEEcccccccc----------------cccccCCCC--CCCCCcEEEEecCChH-HHhh----cCCCeEEEcc
Q 001897 256 LRESNFLLILDDVWETID----------------LDSLGVPQP--EDHGGSKIILTSRSLE-VCMA----MKTDVEVRVD 312 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~iivTtR~~~-v~~~----~~~~~~~~l~ 312 (998)
......+|+|||++.... ...+...+. ....+-.||.||.... +-.. ..-+..+++.
T Consensus 144 ~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~ 223 (495)
T TIGR01241 144 KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVD 223 (495)
T ss_pred HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcC
Confidence 334478999999965310 001111110 1223445666665432 2111 1234678899
Q ss_pred CCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 313 LLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 313 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
..+.++-.++|..+......... .....+++.+.|.-
T Consensus 224 ~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 224 LPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred CCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 99998888999887743222111 12447777877743
No 181
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.91 E-value=9.5e-05 Score=65.97 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=34.8
Q ss_pred CCccEEEcCCCCCCCCChhhhcc-cCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCC
Q 001897 561 PALRVLNLSGTRIHSLPLSLLQL-HNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLS 638 (998)
Q Consensus 561 ~~Lr~L~l~~~~~~~lp~~i~~l-~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 638 (998)
..|...+|++|.+..+|..+... +.+..|++++|. +.++| .+..++.|+.|+++.|.+...|.-+..|.+|-.|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 34444555555555555544322 244444444432 33333 3444444444444444444444444444444444443
Q ss_pred CC
Q 001897 639 RT 640 (998)
Q Consensus 639 ~~ 640 (998)
++
T Consensus 132 ~n 133 (177)
T KOG4579|consen 132 EN 133 (177)
T ss_pred CC
Confidence 33
No 182
>PRK08181 transposase; Validated
Probab=96.88 E-value=0.042 Score=57.72 Aligned_cols=74 Identities=20% Similarity=0.184 Sum_probs=43.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
..-+.++|++|+|||.||..+.+..... ...++|+++ .++...+..... ..... +..+.+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~-----g~~v~f~~~------~~L~~~l~~a~~-----~~~~~----~~l~~l 165 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIEN-----GWRVLFTRT------TDLVQKLQVARR-----ELQLE----SAIAKL 165 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHc-----CCceeeeeH------HHHHHHHHHHHh-----CCcHH----HHHHHH
Confidence 3569999999999999999998865421 223556643 445555433211 01111 122333
Q ss_pred HcCCeEEEEEcccccc
Q 001897 256 LRESNFLLILDDVWET 271 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~ 271 (998)
. +-=||||||+...
T Consensus 166 ~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 166 D--KFDLLILDDLAYV 179 (269)
T ss_pred h--cCCEEEEeccccc
Confidence 2 2459999999543
No 183
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.87 E-value=0.0016 Score=62.50 Aligned_cols=103 Identities=24% Similarity=0.305 Sum_probs=74.3
Q ss_pred CCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCcccc-CCCCCCeeeecCCCCcccCh--hhhcCcCCcEEeC
Q 001897 561 PALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLPALG-GLTKLQDLDLSATSIRELPR--GMENLSNLRRLNL 637 (998)
Q Consensus 561 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~-~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l 637 (998)
...-.+||++|.+..++ .+..++.|.+|.+.+|.+...-|.+. .+++|..|.+.+|+|.++-. .+..+++|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34567888888877663 46678888999999888777777644 45679999999988886633 3566788888888
Q ss_pred CCCccccccc---ccccCCCCCccEEEcccC
Q 001897 638 SRTHYLKKIQ---AGIICRLSSLEILDMTLS 665 (998)
Q Consensus 638 ~~~~~l~~~p---~~~l~~l~~L~~L~l~~~ 665 (998)
-+|+ ...-. .-++.++++|+.||..+-
T Consensus 121 l~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 8776 32211 235788899999987653
No 184
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.86 E-value=0.0037 Score=63.64 Aligned_cols=36 Identities=39% Similarity=0.484 Sum_probs=28.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEe
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATV 217 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~ 217 (998)
-.++|+|..|+||||+++.+..... ..|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~-----~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR-----HKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc-----ccCCEEEEEec
Confidence 3678999999999999999977643 45777766654
No 185
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.023 Score=61.41 Aligned_cols=192 Identities=13% Similarity=0.126 Sum_probs=102.2
Q ss_pred chHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccc-----------cCCCCeEEEEEeCCCCCHHHH
Q 001897 159 TASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSS-----------AHRSGMVIWATVSKELNLRWV 226 (998)
Q Consensus 159 ~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-----------~~~f~~~~wv~~s~~~~~~~~ 226 (998)
|.++..+.+...+..+++ ....++|+.|+||+++|..+...+-.... ..|-| ..|+.-....+-..+
T Consensus 8 Gq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g~~~ 86 (314)
T PRK07399 8 GQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQGKLI 86 (314)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccccccc
Confidence 445666777777777765 78999999999999999999887643321 12222 233322100000001
Q ss_pred HHHHHHHhcCCc--chhhhHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCChH
Q 001897 227 QAQIAERLNLDV--KMEESMQRLGIRLHERLL----RESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRSLE 298 (998)
Q Consensus 227 ~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~ 298 (998)
..+-++..+... ......++ .+.+.+.+. .+++-++|+|+++... ..+.+...+-.-.++.-|++|++...
T Consensus 87 ~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~ 165 (314)
T PRK07399 87 TASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPES 165 (314)
T ss_pred chhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHh
Confidence 111111111000 00011111 122333321 2347789999987653 22333222211113444556655544
Q ss_pred HHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 299 VCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 299 v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
+.. ..+-...+++.++++++..+.+.+...... .......++..++|.|..+..
T Consensus 166 Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 166 LLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred CcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHH
Confidence 433 233456899999999999999987652211 111135789999999976654
No 186
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.81 E-value=0.03 Score=68.98 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..+++.++|++|+|||++|+.+++.+.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345899999999999999999998753
No 187
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.78 E-value=0.0088 Score=64.77 Aligned_cols=104 Identities=11% Similarity=0.134 Sum_probs=66.4
Q ss_pred HHHHHHhhcC-CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCe-EEEEEeCC-CCCHHHHHHHHHHHhcCCcch
Q 001897 164 LGKLMKLLDC-DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGM-VIWATVSK-ELNLRWVQAQIAERLNLDVKM 240 (998)
Q Consensus 164 ~~~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~-~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~ 240 (998)
..++++++.. ..-..+.|+|..|+|||||++.+++.+... +-+. ++|+.+.+ ...+.++.+.+...+......
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~----~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN----HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc----CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 3446666653 344677999999999999999998876432 2233 46766664 456888888888776653321
Q ss_pred hh-----hHHHHHHHHHHH-HHcCCeEEEEEcccccc
Q 001897 241 EE-----SMQRLGIRLHER-LLRESNFLLILDDVWET 271 (998)
Q Consensus 241 ~~-----~~~~~~~~l~~~-l~~~~r~LlVlDdv~~~ 271 (998)
.. ........+.++ ...+++++||+|++...
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 11 111122223333 34567999999998644
No 188
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.019 Score=67.73 Aligned_cols=182 Identities=14% Similarity=0.095 Sum_probs=97.3
Q ss_pred cccchHHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhcccc-----------------CCCCeEEEEEe
Q 001897 156 HQTTASKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSA-----------------HRSGMVIWATV 217 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-----------------~~f~~~~wv~~ 217 (998)
...|.+..+..|..++..+++. .+.++|+.|+||||+|+.+.+.+...... .+++. +.+..
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~-~eid~ 95 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV-FEIDG 95 (576)
T ss_pred HccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe-eeeec
Confidence 3345556667777777776664 56899999999999999998875422100 01111 11221
Q ss_pred CCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEE-EEec
Q 001897 218 SKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKI-ILTS 294 (998)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~i-ivTt 294 (998)
.....+.+ ..++...+...-...++-++|+|+++... ..+.+...+-.-.....+ ++||
T Consensus 96 ~s~~~v~~------------------ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 96 ASNTGVDD------------------IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred cCccCHHH------------------HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 11111211 11111111111112235578899997653 233333222221224444 4565
Q ss_pred CChHHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh-HHHHHH
Q 001897 295 RSLEVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP-LAIITM 357 (998)
Q Consensus 295 R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~ 357 (998)
....+... .+....+++.+++.++....+...+..... .--.+....|++.++|.. .|+..+
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55555432 223457889999999888887776633221 122455678889998865 444443
No 189
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.029 Score=60.47 Aligned_cols=173 Identities=15% Similarity=0.141 Sum_probs=92.9
Q ss_pred HHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhcccc--------------CCCCeEEEEEe-CCCCCHHHH
Q 001897 163 TLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSA--------------HRSGMVIWATV-SKELNLRWV 226 (998)
Q Consensus 163 ~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--------------~~f~~~~wv~~-s~~~~~~~~ 226 (998)
..+.+...+..+++. .+.+.|+.|+||+++|..++..+-.+... .|-| ..|+.. ....+.
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~--- 87 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGD--- 87 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcccc---
Confidence 455667777666655 58899999999999999998876432110 1111 122210 000000
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHH----HcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecC-ChHH
Q 001897 227 QAQIAERLNLDVKMEESMQRLGIRLHERL----LRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSR-SLEV 299 (998)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR-~~~v 299 (998)
........+. .+.+.+.+ ..+++-++|+|+++... .-..+...+-.-..++.+|++|. ...+
T Consensus 88 ----------k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 88 ----------KLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARL 156 (319)
T ss_pred ----------cccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhC
Confidence 0000001111 11222222 12346789999998763 22223222221123555555554 4444
Q ss_pred Hh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 300 CM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 300 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
.. ..+-...+.+.+++.+++.+.+... +. .+..+..++..++|.|+....+
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~------~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLAQ-GV------SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHHc-CC------ChHHHHHHHHHcCCCHHHHHHH
Confidence 32 2233467899999999998888653 11 1233667899999999876543
No 190
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.71 E-value=0.015 Score=56.43 Aligned_cols=136 Identities=17% Similarity=0.195 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhcccc----------------CCCCeEEEEEeCCC---
Q 001897 161 SKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSA----------------HRSGMVIWATVSKE--- 220 (998)
Q Consensus 161 ~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~----------------~~f~~~~wv~~s~~--- 220 (998)
++..+.+.+.+..+++. .+.++|+.|+||+|+|..+...+-..... .+.| ..|+.-...
T Consensus 3 ~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~ 81 (162)
T PF13177_consen 3 EEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKKKS 81 (162)
T ss_dssp HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSSSS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEecccccch
Confidence 44566677777777665 68999999999999999998876443222 1233 344433322
Q ss_pred CCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCCCcEEEEecCChH
Q 001897 221 LNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKIILTSRSLE 298 (998)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~ 298 (998)
..+.++. ++.+.+.... ..+++=.+|+||++.. .....+...+-.-..++.+|++|++..
T Consensus 82 i~i~~ir-~i~~~~~~~~-----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 82 IKIDQIR-EIIEFLSLSP-----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp BSHHHHH-HHHHHCTSS------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhHHHHH-HHHHHHHHHH-----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 2333333 4433332211 1223668899999876 233444333322335778888777643
Q ss_pred -HH-hhcCCCeEEEccCCC
Q 001897 299 -VC-MAMKTDVEVRVDLLN 315 (998)
Q Consensus 299 -v~-~~~~~~~~~~l~~L~ 315 (998)
+. ...+-...+.+.+++
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 22 223334566666653
No 191
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.70 E-value=0.057 Score=61.84 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=80.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+-|.++|++|.|||.+|+.+++.+... .+-++++. +.... .| .+ +....++.+.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~--------~~~l~~~~------l~~~~---vG------es-e~~l~~~f~~ 313 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLP--------LLRLDVGK------LFGGI---VG------ES-ESRMRQMIRI 313 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCC--------EEEEEhHH------hcccc---cC------hH-HHHHHHHHHH
Confidence 35678999999999999999999875321 12222211 11100 11 11 1122233333
Q ss_pred HHcCCeEEEEEcccccccc----c----------ccccCCCCCCCCCcEEEEecCChHH-H----hhcCCCeEEEccCCC
Q 001897 255 LLRESNFLLILDDVWETID----L----------DSLGVPQPEDHGGSKIILTSRSLEV-C----MAMKTDVEVRVDLLN 315 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~----~----------~~l~~~l~~~~~gs~iivTtR~~~v-~----~~~~~~~~~~l~~L~ 315 (998)
.....+++|++|+++.... . ..+...+.....+--||.||...+. - +.-.-+..+.+..-+
T Consensus 314 A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~ 393 (489)
T CHL00195 314 AEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPS 393 (489)
T ss_pred HHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcC
Confidence 3344589999999975311 0 0000001112233445667754332 1 111335678899889
Q ss_pred hHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 316 DDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 316 ~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
.++-.++|..+.........-......+++.+.|.-
T Consensus 394 ~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 394 LEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 999999998887442211100112456666666644
No 192
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.62 E-value=0.098 Score=58.98 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=49.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCH--HHHHHHHHHHhcCCcchh---hhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNL--RWVQAQIAERLNLDVKME---ESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~---~~~~~~~~ 249 (998)
...+|.++|.+|+||||.|..++..++.. .+ .+..|++. .+.+ .+.++.++++++.+.... .+......
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~----g~-kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~ 167 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK----GL-KVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAK 167 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc----CC-eEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHH
Confidence 46799999999999999999998876532 22 34444443 2333 445666677776543221 12222233
Q ss_pred HHHHHHHcCCeEEEEEccc
Q 001897 250 RLHERLLRESNFLLILDDV 268 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv 268 (998)
...+.... .=++|+|..
T Consensus 168 ~al~~~~~--~DvVIIDTA 184 (437)
T PRK00771 168 EGLEKFKK--ADVIIVDTA 184 (437)
T ss_pred HHHHHhhc--CCEEEEECC
Confidence 33333322 246778876
No 193
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.56 E-value=0.0021 Score=59.10 Aligned_cols=23 Identities=48% Similarity=0.492 Sum_probs=21.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+|.|.|++|+||||+|+.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998864
No 194
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.53 E-value=0.014 Score=59.57 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=36.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQA 228 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 228 (998)
.-+++.|+|++|+|||++|.+++..... ....++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~-----~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR-----QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEECCC-CCHHHHHH
Confidence 3479999999999999999998776432 245789999976 66655544
No 195
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.53 E-value=0.11 Score=57.97 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+|.++|++|+||||.|..++..++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999887654
No 196
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.00096 Score=67.01 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=45.7
Q ss_pred CCCCccEEEcCCCCCCCCChhhhcccCCceEeecCC--CCCCCCc-cccCCCCCCeeeecCCCCcccC--hhhhcCcCCc
Q 001897 559 GFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDC--FYLEDLP-ALGGLTKLQDLDLSATSIRELP--RGMENLSNLR 633 (998)
Q Consensus 559 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~--~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~ 633 (998)
.+..|..|++.++.++++ ..+..|++|++|.++.| +....++ ...++++|++|++++|+++-+- ..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 344555555555544433 23345667777777776 4444444 3455577777777777665321 1244556666
Q ss_pred EEeCCCCc
Q 001897 634 RLNLSRTH 641 (998)
Q Consensus 634 ~L~l~~~~ 641 (998)
.|++.+|.
T Consensus 120 ~Ldl~n~~ 127 (260)
T KOG2739|consen 120 SLDLFNCS 127 (260)
T ss_pred hhhcccCC
Confidence 66666665
No 197
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.52 E-value=0.19 Score=55.20 Aligned_cols=194 Identities=11% Similarity=0.090 Sum_probs=117.1
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCChHHHHH-HHHHHHhhhccccCCCCeEEEEEeCCCC---CHHHHHHHHHHHhcC
Q 001897 161 SKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLV-KNLNNILKRDSSAHRSGMVIWATVSKEL---NLRWVQAQIAERLNL 236 (998)
Q Consensus 161 ~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~~~~f~~~~wv~~s~~~---~~~~~~~~i~~~l~~ 236 (998)
.+.+++|-.||.+..-..|.|.||-|+||+.|+ .++.++ ...+..++|.+-. +-..+.+.++.++|-
T Consensus 2 ~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~---------r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 2 KEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKD---------RKNVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred chHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhC---------CCCEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 456788999999888889999999999999999 666654 2226777775432 334455555554432
Q ss_pred ------------------------CcchhhhHHHHHHH--------HHHH-------------------HH--cCCeEEE
Q 001897 237 ------------------------DVKMEESMQRLGIR--------LHER-------------------LL--RESNFLL 263 (998)
Q Consensus 237 ------------------------~~~~~~~~~~~~~~--------l~~~-------------------l~--~~~r~Ll 263 (998)
...-.++.+.-..+ +++. +. ..+|-+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 10001111111111 1110 00 0126799
Q ss_pred EEccccccc-----------ccccccCCCCCCCCCcEEEEecCChHH----HhhcCC--CeEEEccCCChHHHHHHHHHh
Q 001897 264 ILDDVWETI-----------DLDSLGVPQPEDHGGSKIILTSRSLEV----CMAMKT--DVEVRVDLLNDDEAWQLFSQN 326 (998)
Q Consensus 264 VlDdv~~~~-----------~~~~l~~~l~~~~~gs~iivTtR~~~v----~~~~~~--~~~~~l~~L~~~~~~~lf~~~ 326 (998)
|+||+-... +|... +. ..+=..||++|-+... .+.+.. .+.+.+...+++.|.++...+
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~---Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAAS---LV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHH---HH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 999985432 23321 11 1234568887766444 334433 356888999999999999998
Q ss_pred hCCCCCC-------------------CCchHHHHHHHHHccCChHHHHHHHHHhcCCCCH
Q 001897 327 AGVAASK-------------------DPIKPFAQAIARECKGLPLAIITMGTAMRGKTNV 367 (998)
Q Consensus 327 ~~~~~~~-------------------~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~ 367 (998)
....... .....-....++..||=-.-+..+++.++...++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 8442110 1123334567788899888888888888876544
No 198
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.50 E-value=0.017 Score=62.34 Aligned_cols=175 Identities=9% Similarity=0.057 Sum_probs=91.2
Q ss_pred HHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCc----
Q 001897 164 LGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDV---- 238 (998)
Q Consensus 164 ~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---- 238 (998)
-..+...+..+++ ..+.+.|+.|+||+++|+.++..+-.+..... ..++.=...+.+...-+.+.
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~----------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD----------QPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC----------CCCCCCHHHHHHhcCCCCCEEEEc
Confidence 4456666666654 57779999999999999999887643211100 00000011111111000000
Q ss_pred ---c---hhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecC-ChHHHhh-cCCCeE
Q 001897 239 ---K---MEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSR-SLEVCMA-MKTDVE 308 (998)
Q Consensus 239 ---~---~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~-~~~~~~ 308 (998)
. ..+...++...+...-..+++-++|+|+++... ....+...+-.-..++.+|++|. ...+..- .+-...
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 0 001111222222222223346678899998763 23333322222223455555554 4444322 233468
Q ss_pred EEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 309 VRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 309 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
+.+.++++++..+.+....... ...+...+..++|.|...
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 9999999999998887764211 123556778899999644
No 199
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.11 Score=55.91 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=91.5
Q ss_pred HHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccc----------------cCCCCeEEEEEeC---CCCC
Q 001897 163 TLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSS----------------AHRSGMVIWATVS---KELN 222 (998)
Q Consensus 163 ~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----------------~~~f~~~~wv~~s---~~~~ 222 (998)
....+...+..+++ ..+.+.|+.|+||+++|+.+...+-.... ..|-|.. |+.-. +...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~~~~~I~ 89 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH-VIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecCcCCCcCC
Confidence 34556666666654 47889999999999999999876532211 0122221 22111 1111
Q ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEE-EecCChHH
Q 001897 223 LRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKII-LTSRSLEV 299 (998)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ii-vTtR~~~v 299 (998)
+.++ .+....+...-..+++-.+|+|+++... ..+.+...+-.-..++.+| +|++...+
T Consensus 90 vdqi------------------R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 90 VEQI------------------RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRL 151 (319)
T ss_pred HHHH------------------HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 1111 1111111111112335688899998763 3333333222222344444 45554444
Q ss_pred Hh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 300 CM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 300 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
.. ..+-...+.+.+++++++.+.+.... . + .+..+++.++|.|+....+
T Consensus 152 LpTI~SRCq~~~~~~~~~~~~~~~L~~~~-~----~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 152 LPTIVSRCQQWVVTPPSTAQAMQWLKGQG-I----T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hHHHHhcceeEeCCCCCHHHHHHHHHHcC-C----c----hHHHHHHHcCCCHHHHHHH
Confidence 33 33444688999999999998886532 1 1 2456789999999876544
No 200
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.45 E-value=0.018 Score=57.65 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=53.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCcch---hhhHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE-LNLRWVQAQIAERLNLDVKM---EESMQRLGIRL 251 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l 251 (998)
++||.++|+.|+||||.+.+++..++.. -..+..++.... ....+-++..++.++.+... ..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-----~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~ 75 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-----GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREA 75 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-----T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-----cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHH
Confidence 4789999999999998888887766532 234666766432 24556677888888876422 22333444443
Q ss_pred HHHHHcCCeEEEEEccc
Q 001897 252 HERLLRESNFLLILDDV 268 (998)
Q Consensus 252 ~~~l~~~~r~LlVlDdv 268 (998)
.+....++.=++++|=.
T Consensus 76 l~~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 76 LEKFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHHHTTSSEEEEEE-
T ss_pred HHHHhhcCCCEEEEecC
Confidence 44444332346777754
No 201
>PRK07261 topology modulation protein; Provisional
Probab=96.45 E-value=0.0058 Score=59.87 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=25.5
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEE
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIW 214 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~w 214 (998)
.|.|+|++|+||||||+++....... .-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~--~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP--VLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC--eEecCCEEe
Confidence 58999999999999999998764221 223455555
No 202
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.44 E-value=0.072 Score=56.36 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHH
Q 001897 161 SKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQ 227 (998)
Q Consensus 161 ~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 227 (998)
.+.+++++.++..+ +-|.+.|++|+|||++|+.++.... ...+.+++....+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg--------~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD--------RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC--------CCEEEEeCCccCCHHHHh
Confidence 34455666666544 3556899999999999999987431 124566666665555554
No 203
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.11 Score=59.14 Aligned_cols=88 Identities=25% Similarity=0.246 Sum_probs=47.0
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE-LNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
-.+|+|+|++|+||||++..+...+... .....+..++.... ....+.++...+.++.......+...+...+ +.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~---~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL-~~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ---HAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLL-ER 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh---cCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHH-HH
Confidence 4799999999999999999887765321 11233445554221 1122333333444544333222223333222 33
Q ss_pred HHcCCeEEEEEcccc
Q 001897 255 LLRESNFLLILDDVW 269 (998)
Q Consensus 255 l~~~~r~LlVlDdv~ 269 (998)
+. + .=+|++|..-
T Consensus 426 l~-~-~DLVLIDTaG 438 (559)
T PRK12727 426 LR-D-YKLVLIDTAG 438 (559)
T ss_pred hc-c-CCEEEecCCC
Confidence 32 2 5588888763
No 204
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.37 E-value=0.053 Score=54.30 Aligned_cols=158 Identities=21% Similarity=0.272 Sum_probs=85.9
Q ss_pred HHHhhcCC------CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch
Q 001897 167 LMKLLDCD------EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM 240 (998)
Q Consensus 167 l~~~l~~~------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 240 (998)
|++.|.+. ..+-|..+|++|.|||.+|+++++..+.. .+-|.. .+-|.+..|
T Consensus 136 i~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--------~l~vka---------t~liGehVG----- 193 (368)
T COG1223 136 IMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--------LLLVKA---------TELIGEHVG----- 193 (368)
T ss_pred HHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--------eEEech---------HHHHHHHhh-----
Confidence 56777653 46889999999999999999999874321 122211 122323332
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEEEccccccc----------c----cccccCCCC--CCCCCcEEEEecCChHHHh-hc
Q 001897 241 EESMQRLGIRLHERLLRESNFLLILDDVWETI----------D----LDSLGVPQP--EDHGGSKIILTSRSLEVCM-AM 303 (998)
Q Consensus 241 ~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~----------~----~~~l~~~l~--~~~~gs~iivTtR~~~v~~-~~ 303 (998)
+......++.++..+.-.+.+.||.++... + .+.+.-.+. ..+.|...|-.|...++.. ..
T Consensus 194 --dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ai 271 (368)
T COG1223 194 --DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAI 271 (368)
T ss_pred --hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHH
Confidence 222333444444444558999999875431 1 111111111 1234555555555444422 22
Q ss_pred C--CCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCC
Q 001897 304 K--TDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGL 350 (998)
Q Consensus 304 ~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 350 (998)
. -...++...-+++|-.+++..++..-.-+- ..-.+.++++.+|.
T Consensus 272 RsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv--~~~~~~~~~~t~g~ 318 (368)
T COG1223 272 RSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV--DADLRYLAAKTKGM 318 (368)
T ss_pred HhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc--ccCHHHHHHHhCCC
Confidence 2 224566666778888888888883322111 11144566666654
No 205
>PRK10867 signal recognition particle protein; Provisional
Probab=96.36 E-value=0.19 Score=56.57 Aligned_cols=27 Identities=41% Similarity=0.431 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+|.++|++|+||||.|..++..++
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999998888877654
No 206
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.35 E-value=0.025 Score=59.06 Aligned_cols=95 Identities=23% Similarity=0.240 Sum_probs=55.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhc-cccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcc------------hh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRD-SSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVK------------ME 241 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------~~ 241 (998)
.-.++.|+|.+|+|||++|.+++...... ...+....++|++....++...+.+ +++..+.... ..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 34799999999999999999997542211 1111235789999988777655433 3343332111 01
Q ss_pred hhHHHHHHHHHHHHHcC-CeEEEEEccccc
Q 001897 242 ESMQRLGIRLHERLLRE-SNFLLILDDVWE 270 (998)
Q Consensus 242 ~~~~~~~~~l~~~l~~~-~r~LlVlDdv~~ 270 (998)
.........+.+.+.+. +--++|+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 12222333444444444 566788887753
No 207
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.087 Score=60.49 Aligned_cols=97 Identities=14% Similarity=0.237 Sum_probs=58.3
Q ss_pred ccchHHHHHHHHHhhc------CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 001897 157 QTTASKTLGKLMKLLD------CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQI 230 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 230 (998)
..|.++..+++++++. +-+-++++.+|++|||||.+|+.++..+... | +.++|..-.|..+|-.
T Consensus 413 HYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk-----F---fRfSvGG~tDvAeIkG-- 482 (906)
T KOG2004|consen 413 HYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK-----F---FRFSVGGMTDVAEIKG-- 482 (906)
T ss_pred ccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc-----e---EEEeccccccHHhhcc--
Confidence 3466677777887764 2356799999999999999999998876422 2 3355655555544421
Q ss_pred HHHhcCCcchhhhHHHHHHHHHHHHH--cCCeEEEEEcccccc
Q 001897 231 AERLNLDVKMEESMQRLGIRLHERLL--RESNFLLILDDVWET 271 (998)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~r~LlVlDdv~~~ 271 (998)
.... -....--++.+.++ +-.+-|+.||.|+..
T Consensus 483 ------HRRT--YVGAMPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 483 ------HRRT--YVGAMPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred ------ccee--eeccCChHHHHHHHhhCCCCceEEeehhhhh
Confidence 1100 00011123333443 223779999998654
No 208
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.00027 Score=70.77 Aligned_cols=98 Identities=30% Similarity=0.369 Sum_probs=52.1
Q ss_pred cceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecC
Q 001897 537 ETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSA 616 (998)
Q Consensus 537 ~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~ 616 (998)
+.+.|+++++ .+.++. +..+|+.|.||.||-|.|+++ ..+..|++|+.|+|+.
T Consensus 20 ~vkKLNcwg~-~L~DIs--ic~kMp~lEVLsLSvNkIssL------------------------~pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDIS--ICEKMPLLEVLSLSVNKISSL------------------------APLQRCTRLKELYLRK 72 (388)
T ss_pred HhhhhcccCC-CccHHH--HHHhcccceeEEeeccccccc------------------------hhHHHHHHHHHHHHHh
Confidence 3444555555 333332 344555555555555555544 3344455566666666
Q ss_pred CCCcccCh--hhhcCcCCcEEeCCCCcccccccc----cccCCCCCccEEE
Q 001897 617 TSIRELPR--GMENLSNLRRLNLSRTHYLKKIQA----GIICRLSSLEILD 661 (998)
Q Consensus 617 ~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~----~~l~~l~~L~~L~ 661 (998)
|.|..+.+ .+.+|++|+.|.|..|.....-+. .++.-|++|+.||
T Consensus 73 N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 73 NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 65554432 356677777777776664443332 2355566666665
No 209
>PRK08116 hypothetical protein; Validated
Probab=96.29 E-value=0.015 Score=61.35 Aligned_cols=101 Identities=24% Similarity=0.242 Sum_probs=56.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLL 256 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 256 (998)
..+.++|..|+|||+||.++++.+... ...+++++ ..+++..|......... .+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-----~~~v~~~~------~~~ll~~i~~~~~~~~~--~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-----GVPVIFVN------FPQLLNRIKSTYKSSGK--ED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEE------HHHHHHHHHHHHhcccc--cc----HHHHHHHhc
Confidence 458999999999999999999987532 23356665 34455555544432111 11 112333343
Q ss_pred cCCeEEEEEccccc--cccccc--ccCCCCC-CCCCcEEEEecCC
Q 001897 257 RESNFLLILDDVWE--TIDLDS--LGVPQPE-DHGGSKIILTSRS 296 (998)
Q Consensus 257 ~~~r~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~iivTtR~ 296 (998)
+ -=||||||+.. ..+|.. +...+.. ...|..+||||..
T Consensus 178 ~--~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 N--ADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C--CCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3 23899999943 333422 1111110 1235568888864
No 210
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.13 Score=56.50 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhcCCCce-EEEEEeCCCChHHHHHHHHHHHhhhcccc-----------------CCCCeEEEEEeCCCCC
Q 001897 161 SKTLGKLMKLLDCDEIR-RIGIWGLGGIGKTTLVKNLNNILKRDSSA-----------------HRSGMVIWATVSKELN 222 (998)
Q Consensus 161 ~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-----------------~~f~~~~wv~~s~~~~ 222 (998)
+..++.+...+..+++. ...++|+.|+||||+|+.+.+.+-..... .|.|..+...-+....
T Consensus 12 ~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~ 91 (329)
T PRK08058 12 PVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIK 91 (329)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCC
Confidence 34556666777666655 56899999999999999998875422100 1222222111111111
Q ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH-HHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCC-hH
Q 001897 223 LRWVQAQIAERLNLDVKMEESMQRLGIRLHER-LLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRS-LE 298 (998)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~ 298 (998)
+.+ ..+....+... ..+ .+-++|+|+++... ..+.+...+-.-..++.+|++|.+ ..
T Consensus 92 id~------------------ir~l~~~~~~~~~~~-~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 92 KDQ------------------IRYLKEEFSKSGVES-NKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred HHH------------------HHHHHHHHhhCCccc-CceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 111 11111111100 123 35578999987653 233333333222345656666654 33
Q ss_pred HHh-hcCCCeEEEccCCChHHHHHHHHHh
Q 001897 299 VCM-AMKTDVEVRVDLLNDDEAWQLFSQN 326 (998)
Q Consensus 299 v~~-~~~~~~~~~l~~L~~~~~~~lf~~~ 326 (998)
+.. ..+-...+++.++++++..+.+.+.
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 332 2234468999999999988877653
No 211
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.26 E-value=0.00084 Score=78.87 Aligned_cols=193 Identities=23% Similarity=0.259 Sum_probs=90.8
Q ss_pred CccccEEEEeccc-Cchh---hHHHhhhcCceeecccc-cCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCC
Q 001897 732 KHDERRVTISGID-LSGE---WIGWLLTNASSLILNNC-WGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAA 806 (998)
Q Consensus 732 ~~~L~~L~l~~~~-l~~~---~~~~~~~~L~~L~L~~c-~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 806 (998)
.++++.+.+.++. +... ...+.+++|+.|++.+| ........ ........+++|+.|+++++...... +...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~isd~--~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL-LLLLLLSICRKLKSLDLSGCGLVTDI--GLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh-HhhhhhhhcCCcCccchhhhhccCch--hHHH
Confidence 3455666666553 2221 12234667777777663 22111110 01112334566777777766532111 1111
Q ss_pred CCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEecc---ccchhh
Q 001897 807 HDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFC---DNLVEL 883 (998)
Q Consensus 807 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c---~~L~~l 883 (998)
....+|+|+.|.+.+|..+++-. +......++.|++|+++.|..++...... ...++++|+.|.+..+ +.++.+
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~g--l~~i~~~~~~L~~L~l~~c~~~~d~~l~~-~~~~c~~l~~l~~~~~~~c~~l~~~ 340 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEG--LVSIAERCPSLRELDLSGCHGLTDSGLEA-LLKNCPNLRELKLLSLNGCPSLTDL 340 (482)
T ss_pred HHhhCCCcceEccCCCCccchhH--HHHHHHhcCcccEEeeecCccchHHHHHH-HHHhCcchhhhhhhhcCCCccHHHH
Confidence 12235677777766665432211 11222246667777777777664433222 2344666555554443 334443
Q ss_pred hccccccCCCCCCCC-CccceeecCCCccccccccCCCCCCCcc-EEEEecCCCC
Q 001897 884 FCYYSELNFTPETVV-PNLRNLELKNLPKLRTICRQKESWQCLE-QVKVIKCNLL 936 (998)
Q Consensus 884 ~~~~~~~~~~~~~~~-p~L~~L~l~~~~~L~~i~~~~~~l~~L~-~L~i~~C~~L 936 (998)
...... ... -.+..+.+.+|++++.+........... .+.+.+||.+
T Consensus 341 ~l~~~~------~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 341 SLSGLL------TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHHHhh------ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 321110 112 2566677777777766543322222222 4666777777
No 212
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.25 E-value=0.43 Score=52.27 Aligned_cols=58 Identities=26% Similarity=0.278 Sum_probs=39.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHH--HHHHHHHHHhcCCc
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLR--WVQAQIAERLNLDV 238 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~ 238 (998)
...||-.+|.-|.||||-|-.+++.++. ....+-+...+.+.+. +-++.++++.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk------~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK------KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH------cCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 3678999999999999999999887753 2233444444444433 44566777776543
No 213
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.24 E-value=0.0028 Score=63.52 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=61.6
Q ss_pred hhhcccCCceEeecCCCCCCCCc-----cccCCCCCCeeeecCCCC---c-ccChh-------hhcCcCCcEEeCCCCcc
Q 001897 579 SLLQLHNCRALLLRDCFYLEDLP-----ALGGLTKLQDLDLSATSI---R-ELPRG-------MENLSNLRRLNLSRTHY 642 (998)
Q Consensus 579 ~i~~l~~L~~L~L~~~~~~~~lp-----~i~~l~~L~~L~l~~~~l---~-~lp~~-------i~~L~~L~~L~l~~~~~ 642 (998)
.+..+..+..++|++|++.+.-. .|.+-.+|+..+++.-.. . ++|.. +-++++|+..+|+.|-+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 44457788899999988665433 266678888888876321 1 44433 45678888888888876
Q ss_pred cccccc---cccCCCCCccEEEcccCcc
Q 001897 643 LKKIQA---GIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 643 l~~~p~---~~l~~l~~L~~L~l~~~~~ 667 (998)
-...|. ..|++-+.|.+|.+++|.+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCC
Confidence 555554 2467778888888888866
No 214
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.24 E-value=0.13 Score=52.33 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccc-cCCCCeEEEEEeCCC----------C-------
Q 001897 160 ASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSS-AHRSGMVIWATVSKE----------L------- 221 (998)
Q Consensus 160 ~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-~~~f~~~~wv~~s~~----------~------- 221 (998)
.++.-..+......++.+-..++|+.|.||-|.+..+.+.+....+ +-.-+..-|.+-|.. +
T Consensus 18 ~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPS 97 (351)
T KOG2035|consen 18 HEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPS 97 (351)
T ss_pred HHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChh
Confidence 3444455555555677899999999999999999988887643211 122333444443322 1
Q ss_pred ----CHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeE-EEEEcccccc--cccccccCCCCCCCCCcEEEEec
Q 001897 222 ----NLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNF-LLILDDVWET--IDLDSLGVPQPEDHGGSKIILTS 294 (998)
Q Consensus 222 ----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt 294 (998)
.-+.+.++|+.+.....+. ....++.| ++|+-.+++. +.-..+....-.-...+|+|+..
T Consensus 98 DaG~~DRvViQellKevAQt~qi-------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~c 164 (351)
T KOG2035|consen 98 DAGNYDRVVIQELLKEVAQTQQI-------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVC 164 (351)
T ss_pred hcCcccHHHHHHHHHHHHhhcch-------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEe
Confidence 1122333333333211110 01122233 4444444432 11111211111223456666533
Q ss_pred CC-hHHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHhcC---------
Q 001897 295 RS-LEVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAMRG--------- 363 (998)
Q Consensus 295 R~-~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~--------- 363 (998)
.+ ..+.. .-+..-.+++...+++|-...+++.+..+.-.-. .+++.+|+++++|.---...+...++-
T Consensus 165 ns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp-~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~ 243 (351)
T KOG2035|consen 165 NSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP-KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANS 243 (351)
T ss_pred cCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc-HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccC
Confidence 21 11111 1112246889999999999999888844332222 678999999998854333333333321
Q ss_pred -CCCHHHHHHHHHHHhhc
Q 001897 364 -KTNVKLWKHALKEWQKS 380 (998)
Q Consensus 364 -~~~~~~w~~~~~~l~~~ 380 (998)
....-+|+-+..+....
T Consensus 244 ~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 244 QVIPKPDWEIYIQEIARV 261 (351)
T ss_pred CCCCCccHHHHHHHHHHH
Confidence 11235899998876543
No 215
>PRK10536 hypothetical protein; Provisional
Probab=96.23 E-value=0.045 Score=56.20 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=30.4
Q ss_pred chHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHH
Q 001897 159 TASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 159 ~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.+......++.++.+. .+|.+.|+.|.|||+||.++..+
T Consensus 59 p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 59 ARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 3445566667777653 59999999999999999998774
No 216
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.21 E-value=0.026 Score=60.84 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=43.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhcc-ccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDS-SAHRSGMVIWATVSKELNLRWVQAQIAERLNLD 237 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 237 (998)
.-+++-|+|.+|+|||+++.+++-...-.. ....-..++|++....|++.++.+ ++++++.+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 347889999999999999988764321110 011234789999999999888764 56776654
No 217
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.065 Score=63.09 Aligned_cols=177 Identities=16% Similarity=0.134 Sum_probs=103.5
Q ss_pred CcccccchHHHHHHHHHhhcCC---------CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCH
Q 001897 153 SIEHQTTASKTLGKLMKLLDCD---------EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNL 223 (998)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~ 223 (998)
++.|.+...+++.+++++|..+ -++=+.++|++|.|||-||++++-... +=|+++|..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg----------VPF~svSGS--- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG----------VPFFSVSGS--- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC----------CceeeechH---
Confidence 3444455678888899999764 256788999999999999999987532 234445432
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc-----------------cccccCCCCCCC-
Q 001897 224 RWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID-----------------LDSLGVPQPEDH- 285 (998)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~-----------------~~~l~~~l~~~~- 285 (998)
+.++.+.... ......+....+......+.+|+++...- ++++..-.....
T Consensus 379 -----EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 -----EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred -----HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 2222222110 22333444444455578899998865421 111111111111
Q ss_pred -CCcEEEEecCChHHHh--hc---CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHH
Q 001897 286 -GGSKIILTSRSLEVCM--AM---KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 286 -~gs~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 354 (998)
.+--++-+|+..++.. .+ .-+..+.++.-+.....++|.-++.......+..++++ |+...-|.+=|.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 1222333555444422 11 23457888888888899999988865444445556666 888888877554
No 218
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.18 E-value=0.62 Score=57.97 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.++.++|+.|+|||++|+.+++..
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999998764
No 219
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.18 E-value=0.04 Score=57.46 Aligned_cols=93 Identities=24% Similarity=0.406 Sum_probs=57.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCc------chhh-----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDV------KMEE----- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~----- 242 (998)
+-+.++|+|..|+|||||++.+++..+.+ +-+.++++-+.+.. .+.++.+.+.+.-..+. ..++
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~----~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 143 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA----HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGAR 143 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc----CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 34678999999999999999999986542 23456677776554 35556665544211110 0001
Q ss_pred -hHHHHHHHHHHHHH-c-CCeEEEEEcccccc
Q 001897 243 -SMQRLGIRLHERLL-R-ESNFLLILDDVWET 271 (998)
Q Consensus 243 -~~~~~~~~l~~~l~-~-~~r~LlVlDdv~~~ 271 (998)
.....+..+.+++. . ++.+|+++||+...
T Consensus 144 ~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 144 ARVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11122334555553 2 67999999998544
No 220
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.16 E-value=0.00081 Score=78.98 Aligned_cols=211 Identities=20% Similarity=0.271 Sum_probs=120.3
Q ss_pred hcccceeEEeecCC------CCCCCCCccccEEEEecc-cC---ch---hhHHHhhhcCceeecccccCchhh-hhhhhh
Q 001897 712 IGRLRSFQFFIGPT------ANSLPTKHDERRVTISGI-DL---SG---EWIGWLLTNASSLILNNCWGLDQM-LETLVI 777 (998)
Q Consensus 712 l~~L~~L~l~~~~~------~~~~~~~~~L~~L~l~~~-~l---~~---~~~~~~~~~L~~L~L~~c~~l~~~-~~~~~~ 777 (998)
++.|+.+.+..... ......+++|+.|+++++ .. .. ......+.+|++|++++|....+. +..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l-- 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL-- 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH--
Confidence 45566665543311 122356678899998862 11 11 112234688999999998754332 2211
Q ss_pred cccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeec---Ccccc
Q 001897 778 DSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQ---CPRLK 854 (998)
Q Consensus 778 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~---c~~L~ 854 (998)
...+++|+.|.+.+|...+. .+.......+|+|++|+|++|..+.+-. .......+++|+.+.+.. |+.++
T Consensus 265 --~~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~~~~d~~--l~~~~~~c~~l~~l~~~~~~~c~~l~ 338 (482)
T KOG1947|consen 265 --ASRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCHGLTDSG--LEALLKNCPNLRELKLLSLNGCPSLT 338 (482)
T ss_pred --HhhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCccchHHH--HHHHHHhCcchhhhhhhhcCCCccHH
Confidence 12378999999888874211 1222334567889999999987763311 111122366666655443 44566
Q ss_pred cccchhHHHhhC-CCCCEEEEeccccchhhhccccccCCCCCCCCCccc-eeecCCCccc-cccccCCCCCCCccEEEEe
Q 001897 855 YLLTYGSFILAL-PNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLR-NLELKNLPKL-RTICRQKESWQCLEQVKVI 931 (998)
Q Consensus 855 ~l~~~~~~~~~l-~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~-~L~l~~~~~L-~~i~~~~~~l~~L~~L~i~ 931 (998)
.+.... ..... -.+..+.+.+|+.++.+...... ..... .+.+.+||.+ ..+........+++.|.+.
T Consensus 339 ~~~l~~-~~~~~~d~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~ 409 (482)
T KOG1947|consen 339 DLSLSG-LLTLTSDDLAELILRSCPKLTDLSLSYCG--------ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLS 409 (482)
T ss_pred HHHHHH-hhccCchhHhHHHHhcCCCcchhhhhhhh--------ccCcchHHHhcCCcccchHHHHHhccCCccceEecc
Confidence 553322 11222 26777888888888876544321 12222 5677888888 4443333444558999999
Q ss_pred cCCCCCCC
Q 001897 932 KCNLLREL 939 (998)
Q Consensus 932 ~C~~L~~l 939 (998)
.|..++.-
T Consensus 410 ~~~~~t~~ 417 (482)
T KOG1947|consen 410 DCRLVTDK 417 (482)
T ss_pred cCcccccc
Confidence 98876543
No 221
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.16 E-value=0.11 Score=63.43 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=31.3
Q ss_pred chHHHHHHHHHhhcC------CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 159 TASKTLGKLMKLLDC------DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 159 ~~~~~~~~l~~~l~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
|.++..+.+++++.. ....++.++|++|+||||+|+.++...
T Consensus 326 g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 326 GLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred CHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445556666665541 245689999999999999999998764
No 222
>PRK06526 transposase; Provisional
Probab=96.16 E-value=0.005 Score=64.28 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+..-+.|+|++|+|||+||..+.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 345689999999999999999988654
No 223
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.15 E-value=0.03 Score=57.99 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=36.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhcc-ccCCCCeEEEEEeCCCCCHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDS-SAHRSGMVIWATVSKELNLRWVQ 227 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~~~~f~~~~wv~~s~~~~~~~~~ 227 (998)
.-.++.|+|.+|+|||++|.+++....... ....=..++|++....++...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 347999999999999999999876532110 00111467899988877765554
No 224
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.11 E-value=0.021 Score=61.18 Aligned_cols=87 Identities=18% Similarity=0.194 Sum_probs=54.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-----hhhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-----EESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~ 249 (998)
.-+++-|+|++|+||||||.++...... .-..++|++..+.++.. .+++++.+.+. ..+.++...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~-----~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALE 123 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 4579999999999999999998765432 23457899887766653 34555543211 112333333
Q ss_pred HHHHHHHcCCeEEEEEcccccc
Q 001897 250 RLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
.+........--++|+|.|-..
T Consensus 124 ~~~~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 124 IAETLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHHHHhhccCCcEEEEcchhhh
Confidence 3333344444679999998643
No 225
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.10 E-value=0.15 Score=56.15 Aligned_cols=30 Identities=37% Similarity=0.581 Sum_probs=26.5
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhc
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRD 203 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 203 (998)
+...+|+|.|.=|+||||+.+.+.+.+...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 567899999999999999999998887643
No 226
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.06 E-value=0.03 Score=56.66 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=32.6
Q ss_pred ccchHHHHHHHH----HhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 157 QTTASKTLGKLM----KLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 157 ~~~~~~~~~~l~----~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
..|.+...+.++ .++......-|.+||..|.|||++++++.+.+..
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 334444444443 3444455667888999999999999999988754
No 227
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.04 E-value=0.027 Score=55.66 Aligned_cols=27 Identities=48% Similarity=0.469 Sum_probs=24.0
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+|.+.|+.|+||||+|+.++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 446999999999999999999998764
No 228
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.03 E-value=0.2 Score=54.75 Aligned_cols=168 Identities=14% Similarity=0.069 Sum_probs=91.9
Q ss_pred HHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccc-----------------cCCCCeEEEEEeCC---CC
Q 001897 163 TLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSS-----------------AHRSGMVIWATVSK---EL 221 (998)
Q Consensus 163 ~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-----------------~~~f~~~~wv~~s~---~~ 221 (998)
.-+.+...+..+++ .-+.+.|+.|+||+|+|..++..+-.... ..|-|.. ++.-.. ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~~~~~I 88 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYY-TLTPEKGKSSL 88 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecccccccC
Confidence 45567777766654 47779999999999999998877643211 0122221 121100 00
Q ss_pred CHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEE-EecCChH
Q 001897 222 NLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKII-LTSRSLE 298 (998)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ii-vTtR~~~ 298 (998)
.+ +...++...+...-..+++-++|+|+++... ....+...+-.-..++.+| +|++...
T Consensus 89 ~i------------------dqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 89 GV------------------DAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred CH------------------HHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 11 1112222222222223346789999987663 2333332222112344444 4444454
Q ss_pred HHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHH
Q 001897 299 VCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAII 355 (998)
Q Consensus 299 v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 355 (998)
+.. ..+-...+.+.+++++++.+.+.+..+ ...+.+..++..++|.|....
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~------~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSREVT------MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHHccC------CCHHHHHHHHHHcCCCHHHHH
Confidence 543 233345789999999999887765432 112336678999999996543
No 229
>PRK12377 putative replication protein; Provisional
Probab=96.01 E-value=0.011 Score=61.19 Aligned_cols=75 Identities=25% Similarity=0.239 Sum_probs=45.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
+...+.++|.+|+|||+||.++++.+... ...++++++. ++...|-...... ... ..+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~-----g~~v~~i~~~------~l~~~l~~~~~~~----~~~----~~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-----GRSVIVVTVP------DVMSRLHESYDNG----QSG----EKFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc-----CCCeEEEEHH------HHHHHHHHHHhcc----chH----HHHHHH
Confidence 34689999999999999999999987532 2335666553 3444443332110 011 123333
Q ss_pred HHcCCeEEEEEccccc
Q 001897 255 LLRESNFLLILDDVWE 270 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~ 270 (998)
+. +-=||||||+..
T Consensus 161 l~--~~dLLiIDDlg~ 174 (248)
T PRK12377 161 LC--KVDLLVLDEIGI 174 (248)
T ss_pred hc--CCCEEEEcCCCC
Confidence 32 366999999943
No 230
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.99 E-value=0.078 Score=55.66 Aligned_cols=94 Identities=26% Similarity=0.258 Sum_probs=57.6
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhcc-ccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch------------hh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDS-SAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM------------EE 242 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~~ 242 (998)
-.+.=|+|.+|+|||.||.+++-...-.. ..+.-..++|++....|+...+. +|++..+.+... ..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 35889999999999999988865432111 12234569999999999988775 466665433210 11
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEEccccc
Q 001897 243 SMQRLGIRLHERLLRESNFLLILDDVWE 270 (998)
Q Consensus 243 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~ 270 (998)
........+...+.+.+=-|||+|.+-.
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHH
Confidence 2223333344444445456888888743
No 231
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.99 E-value=0.31 Score=53.12 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=54.1
Q ss_pred CeEEEEEccccccc--ccccccCCCCCCCCCcE-EEEecCChHHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCC
Q 001897 259 SNFLLILDDVWETI--DLDSLGVPQPEDHGGSK-IILTSRSLEVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKD 334 (998)
Q Consensus 259 ~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~-iivTtR~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 334 (998)
++-++|+|+++... ..+.+...+-.-.+++. |++|++...+.. ..+-...+.+.+++.++..+.+.... . +
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-~----~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-V----A 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-C----C
Confidence 35688889998762 33443333322223444 555555555543 23334689999999999998887652 1 1
Q ss_pred CchHHHHHHHHHccCChHHHHHH
Q 001897 335 PIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 335 ~~~~~~~~i~~~c~glPlai~~~ 357 (998)
+ ...++..++|.|.....+
T Consensus 207 ~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred h----HHHHHHHcCCCHHHHHHH
Confidence 1 234577889999765443
No 232
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.99 E-value=0.025 Score=60.73 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=54.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-----hhhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-----EESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~ 249 (998)
.-+++-|+|++|+||||||.+++..... .-..++|++....+++. .+++++.+.+. ..+.++...
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~-----~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK-----LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALE 123 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHH
Confidence 4578899999999999999998765432 23468899988777653 34445443211 112233333
Q ss_pred HHHHHHHcCCeEEEEEcccccc
Q 001897 250 RLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
.+......+.--++|+|.|-..
T Consensus 124 i~~~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 124 IADSLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHHHHHhccCCCEEEEcchHhh
Confidence 3333344445679999997543
No 233
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.059 Score=62.11 Aligned_cols=151 Identities=15% Similarity=0.196 Sum_probs=81.4
Q ss_pred chHHHHHHHHHhhc------CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001897 159 TASKTLGKLMKLLD------CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 159 ~~~~~~~~l~~~l~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 232 (998)
|.++..++++++|. .-.-+++++||++|+|||+|++.++...... | +-+.+..-.|..+|-.
T Consensus 327 GLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk-----f---vR~sLGGvrDEAEIRG---- 394 (782)
T COG0466 327 GLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK-----F---VRISLGGVRDEAEIRG---- 394 (782)
T ss_pred CchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC-----E---EEEecCccccHHHhcc----
Confidence 45666777777763 2244799999999999999999999876432 2 3344444444333311
Q ss_pred HhcCCcch--hhhHHHHHHHHHHHHHcCCeEEEEEccccccc-c---------cccccCCCC----CC-----CCCcEEE
Q 001897 233 RLNLDVKM--EESMQRLGIRLHERLLRESNFLLILDDVWETI-D---------LDSLGVPQP----ED-----HGGSKII 291 (998)
Q Consensus 233 ~l~~~~~~--~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~-~---------~~~l~~~l~----~~-----~~gs~ii 291 (998)
.... ..-.....+.+.+ . +.++-+++||.++... + ++.+..-.. +. -.=|.|+
T Consensus 395 ----HRRTYIGamPGrIiQ~mkk-a-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 395 ----HRRTYIGAMPGKIIQGMKK-A-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ----ccccccccCChHHHHHHHH-h-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 1110 0011112222222 1 3357899999987542 1 111111000 00 0014443
Q ss_pred -EecCC-hH-H-HhhcCCCeEEEccCCChHHHHHHHHHhh
Q 001897 292 -LTSRS-LE-V-CMAMKTDVEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 292 -vTtR~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (998)
|||-+ -+ + +..+....++++.+-+++|-.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44432 22 1 2233344689999999999888777765
No 234
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.92 E-value=0.0039 Score=62.75 Aligned_cols=84 Identities=25% Similarity=0.267 Sum_probs=59.6
Q ss_pred hcCCCCccEEEcCCCC--CC-CCChhhhcccCCceEeecCCCCC--CCCccccCCCCCCeeeecCCCCcccCh----hhh
Q 001897 557 LDGFPALRVLNLSGTR--IH-SLPLSLLQLHNCRALLLRDCFYL--EDLPALGGLTKLQDLDLSATSIRELPR----GME 627 (998)
Q Consensus 557 ~~~l~~Lr~L~l~~~~--~~-~lp~~i~~l~~L~~L~L~~~~~~--~~lp~i~~l~~L~~L~l~~~~l~~lp~----~i~ 627 (998)
|..+++|+.|.++.|. +. .++....++++|++|++++|.+- ..++.+.++.+|..|++.+|..+.+-. .+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 4678889999999884 33 56666667799999999998642 334457888899999999987765432 144
Q ss_pred cCcCCcEEeCCCC
Q 001897 628 NLSNLRRLNLSRT 640 (998)
Q Consensus 628 ~L~~L~~L~l~~~ 640 (998)
-+++|.+|+-...
T Consensus 141 ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 141 LLPSLKYLDGCDV 153 (260)
T ss_pred Hhhhhcccccccc
Confidence 5677777765443
No 235
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.90 E-value=0.045 Score=56.63 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=35.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQ 227 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 227 (998)
.-.++.|+|.+|+|||++|.+++..... .-..++|++.. .++...+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~-----~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK-----NGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEECC-CCCHHHHH
Confidence 3479999999999999999999876532 23568899887 55555443
No 236
>PRK09354 recA recombinase A; Provisional
Probab=95.90 E-value=0.031 Score=60.50 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=56.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-----hhhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-----EESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~ 249 (998)
.-+++-|+|++|+||||||.+++..... .-..++|++....++.. .+++++.+.+. ..+.++...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~-----~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~ 128 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALE 128 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 4578999999999999999998765432 23568899988877753 45555543211 112333333
Q ss_pred HHHHHHHcCCeEEEEEcccccc
Q 001897 250 RLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
.+........--+||+|.|-..
T Consensus 129 i~~~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 129 IADTLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HHHHHhhcCCCCEEEEeChhhh
Confidence 3334344445679999998643
No 237
>PRK06696 uridine kinase; Validated
Probab=95.88 E-value=0.013 Score=60.45 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=30.8
Q ss_pred HHHHHHHHhh---cCCCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 162 KTLGKLMKLL---DCDEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 162 ~~~~~l~~~l---~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+.+++|.+.+ ..+...+|+|.|.+|+||||+|+.+...+.
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444555444 245678999999999999999999998764
No 238
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.87 E-value=0.013 Score=61.52 Aligned_cols=119 Identities=17% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEE---EeCCCCCHHHHHHHH--HHHhcCC--cchhhhHH
Q 001897 173 CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWA---TVSKELNLRWVQAQI--AERLNLD--VKMEESMQ 245 (998)
Q Consensus 173 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv---~~s~~~~~~~~~~~i--~~~l~~~--~~~~~~~~ 245 (998)
..+..-++|+|+.|.|||||.+.+...+... ...+++ .+.......++...+ +.+.... .+..+. .
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~------~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~-~ 180 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG------ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG-C 180 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC------CceEEECCEEeecchhHHHHHHHhccccccccccccccccc-c
Confidence 3456789999999999999999998765432 112222 111111122332221 1111100 011011 1
Q ss_pred HHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHHh
Q 001897 246 RLGIRLHERLLRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVCM 301 (998)
Q Consensus 246 ~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 301 (998)
.....+...+.....=++++|.+-....+..+...+ ..|..||+||.+..+..
T Consensus 181 ~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 181 PKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred hHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 112234444443457899999987666555544333 24778999998766643
No 239
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.15 Score=60.67 Aligned_cols=86 Identities=23% Similarity=0.279 Sum_probs=48.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
.+.+...+|+.|||||-||++++..+-.+ =+..+.+++|+-.....+ .+-+|.+ +.....++ +-.+-+.
T Consensus 520 PigsFlF~GPTGVGKTELAkaLA~~Lfg~-----e~aliR~DMSEy~EkHsV----SrLIGaP-PGYVGyee-GG~LTEa 588 (786)
T COG0542 520 PIGSFLFLGPTGVGKTELAKALAEALFGD-----EQALIRIDMSEYMEKHSV----SRLIGAP-PGYVGYEE-GGQLTEA 588 (786)
T ss_pred CceEEEeeCCCcccHHHHHHHHHHHhcCC-----CccceeechHHHHHHHHH----HHHhCCC-CCCceecc-ccchhHh
Confidence 35678889999999999999998864211 144566666553222222 2222322 22211112 3334445
Q ss_pred HHcCCeEEEEEcccccc
Q 001897 255 LLRESNFLLILDDVWET 271 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~ 271 (998)
.+++.-.+|.||++...
T Consensus 589 VRr~PySViLlDEIEKA 605 (786)
T COG0542 589 VRRKPYSVILLDEIEKA 605 (786)
T ss_pred hhcCCCeEEEechhhhc
Confidence 55442348889998765
No 240
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.044 Score=59.67 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=49.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN--LRWVQAQIAERLNLDVKMEESMQRLGIRLH 252 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 252 (998)
..++|+++|++|+||||++..++..+... .+ .+..++.. .+. ..+-++..++..+.+.....+...+...+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~----Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK----KK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc----CC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHH
Confidence 35799999999999999999998765421 12 24445443 333 223334455556655433334444443332
Q ss_pred HHHHc-CCeEEEEEcccc
Q 001897 253 ERLLR-ESNFLLILDDVW 269 (998)
Q Consensus 253 ~~l~~-~~r~LlVlDdv~ 269 (998)
.+.. .+.=++++|-.-
T Consensus 314 -~lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 314 -YFKEEARVDYILIDTAG 330 (436)
T ss_pred -HHHhccCCCEEEEeCcc
Confidence 2322 113467778653
No 241
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.81 E-value=0.021 Score=56.01 Aligned_cols=23 Identities=52% Similarity=0.644 Sum_probs=21.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.|.|.|.+|+||||+|+.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 242
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.80 E-value=0.044 Score=53.23 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=30.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN 222 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 222 (998)
++.|+|.+|+||||+++.+...... .-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-----~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-----KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-----cCCEEEEEECCcchH
Confidence 4689999999999999999887542 234577887765543
No 243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.80 E-value=0.1 Score=64.06 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=75.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
.+-|.++|++|+||||+|+.+++.... . .+.++.+ ++ ..... ... ......+.+..
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~-----~---~i~i~~~------~i----~~~~~-----g~~-~~~l~~lf~~a 267 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGA-----Y---FISINGP------EI----MSKYY-----GES-EERLREIFKEA 267 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCC-----e---EEEEecH------HH----hcccc-----cHH-HHHHHHHHHHH
Confidence 467889999999999999999886421 1 1223221 11 11110 011 11222233333
Q ss_pred HcCCeEEEEEcccccccc-------------cccccCCCCC-CCCCcEEEE-ecCCh-HHHhhc----CCCeEEEccCCC
Q 001897 256 LRESNFLLILDDVWETID-------------LDSLGVPQPE-DHGGSKIIL-TSRSL-EVCMAM----KTDVEVRVDLLN 315 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~~~-------------~~~l~~~l~~-~~~gs~iiv-TtR~~-~v~~~~----~~~~~~~l~~L~ 315 (998)
......+|+||+++.... ...+...+.. ...+..++| ||... .+.... .-...+.+...+
T Consensus 268 ~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~ 347 (733)
T TIGR01243 268 EENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPD 347 (733)
T ss_pred HhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcC
Confidence 334468999999865310 0111111111 122333444 44432 221111 123567788888
Q ss_pred hHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChH
Q 001897 316 DDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPL 352 (998)
Q Consensus 316 ~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 352 (998)
.++-.+++..+........+ .....+++.+.|..-
T Consensus 348 ~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~g 382 (733)
T TIGR01243 348 KRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVG 382 (733)
T ss_pred HHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCH
Confidence 88888888765532211111 124577788877653
No 244
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.79 E-value=0.072 Score=55.68 Aligned_cols=149 Identities=21% Similarity=0.173 Sum_probs=82.1
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC-----HHHHHHHHHHHhcCCcchhhhHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN-----LRWVQAQIAERLNLDVKMEESMQRLG 248 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~-----~~~~~~~i~~~l~~~~~~~~~~~~~~ 248 (998)
++-.-|.|+|+.|.|||+|...+..+.+ ....+ .+-|....... +..|.+++..++........+..+..
T Consensus 47 gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E~---~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l 121 (408)
T KOG2228|consen 47 GESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGEN---FLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENL 121 (408)
T ss_pred cCCCceEEEccCCCCceEeeHHHHhhHH--hcCCe---EEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhH
Confidence 4556788999999999999988877622 22222 23344433332 33344444443332222222333444
Q ss_pred HHHHHHHHcC-----CeEEEEEccccccccc-------ccccCCCCCCCCCcEEEEecCC-------hHHHhhcCCCeEE
Q 001897 249 IRLHERLLRE-----SNFLLILDDVWETIDL-------DSLGVPQPEDHGGSKIILTSRS-------LEVCMAMKTDVEV 309 (998)
Q Consensus 249 ~~l~~~l~~~-----~r~LlVlDdv~~~~~~-------~~l~~~l~~~~~gs~iivTtR~-------~~v~~~~~~~~~~ 309 (998)
.++.+.+..+ -++.+|+|.++-.... .-+........|-|-|-+|||- +.|-.+.....++
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~ 201 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIF 201 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceee
Confidence 4555555432 3689999887654211 1111222234566778899994 3333344444456
Q ss_pred EccCCChHHHHHHHHHhh
Q 001897 310 RVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 310 ~l~~L~~~~~~~lf~~~~ 327 (998)
-+..++-++-..++++..
T Consensus 202 m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 202 MLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccCCCChHHHHHHHHHHh
Confidence 667777777777777665
No 245
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.026 Score=62.25 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=37.5
Q ss_pred cccccchHHHHHHHHHhhcCCC---------ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDE---------IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~---------~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
+.|.+...+++++++++|.+.. .+-|.++|++|.|||-||++|+-.
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 3344556788999999998742 467899999999999999999875
No 246
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.78 E-value=0.079 Score=64.89 Aligned_cols=81 Identities=21% Similarity=0.223 Sum_probs=45.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLL 256 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 256 (998)
.++.++|+.|+|||+||+.++..+ +...+.+++++..+...+ ...++.+.. .... +....+.+.+.
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l--------~~~~~~~d~se~~~~~~~----~~lig~~~g-yvg~-~~~~~l~~~~~ 550 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEAL--------GVHLERFDMSEYMEKHTV----SRLIGAPPG-YVGF-EQGGLLTEAVR 550 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHh--------cCCeEEEeCchhhhcccH----HHHhcCCCC-Cccc-chhhHHHHHHH
Confidence 468899999999999999998764 223466666553222111 112222111 0011 11122334444
Q ss_pred cCCeEEEEEcccccc
Q 001897 257 RESNFLLILDDVWET 271 (998)
Q Consensus 257 ~~~r~LlVlDdv~~~ 271 (998)
....-+++||+++..
T Consensus 551 ~~p~~VvllDEieka 565 (731)
T TIGR02639 551 KHPHCVLLLDEIEKA 565 (731)
T ss_pred hCCCeEEEEechhhc
Confidence 444679999999765
No 247
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.74 E-value=0.057 Score=58.82 Aligned_cols=62 Identities=23% Similarity=0.229 Sum_probs=43.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhcccc-CCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSA-HRSGMVIWATVSKELNLRWVQAQIAERLNLD 237 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 237 (998)
.-.++-|+|.+|+|||++|..++-...-.... ..-..++|++....|.+.++. +|++.++.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 35688899999999999998887543211001 122369999999999888764 566766543
No 248
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.0091 Score=55.39 Aligned_cols=27 Identities=41% Similarity=0.511 Sum_probs=23.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
..-|.|.|++|+||||+++.+.+.++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 346899999999999999999998764
No 249
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.70 E-value=0.075 Score=57.84 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=43.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhc-cccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRD-SSAHRSGMVIWATVSKELNLRWVQAQIAERLNLD 237 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 237 (998)
.-.++-|+|.+|+|||+|+.+++-...-. .....-..++|++....|++.++.+ +++.++.+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 34688899999999999999886432211 0112234789999999999888755 56666654
No 250
>PRK09183 transposase/IS protein; Provisional
Probab=95.68 E-value=0.023 Score=59.71 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...+.|+|++|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999997764
No 251
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=1.1 Score=49.29 Aligned_cols=168 Identities=15% Similarity=0.154 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhcCCC---------ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 001897 161 SKTLGKLMKLLDCDE---------IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIA 231 (998)
Q Consensus 161 ~~~~~~l~~~l~~~~---------~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 231 (998)
++.++++.+++...+ -|--.++|++|.|||+++.+++|.+. |+. .=...+...+-.+
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~-------ydI-ydLeLt~v~~n~d------ 276 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN-------YDI-YDLELTEVKLDSD------ 276 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC-------Cce-EEeeeccccCcHH------
Confidence 344555555555431 24567899999999999999998653 332 1122222111111
Q ss_pred HHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccccccc--------------------ccCCCC--CCCC-Cc
Q 001897 232 ERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETIDLDS--------------------LGVPQP--EDHG-GS 288 (998)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~--------------------l~~~l~--~~~~-gs 288 (998)
..++... ...|-.||+.|++-..+... +...+. +... +-
T Consensus 277 ----------------Lr~LL~~--t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~E 338 (457)
T KOG0743|consen 277 ----------------LRHLLLA--TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDE 338 (457)
T ss_pred ----------------HHHHHHh--CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCc
Confidence 1122111 12367777787765422110 100000 1111 23
Q ss_pred EEEE-ecCChHHH-----hhcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHH-Hh
Q 001897 289 KIIL-TSRSLEVC-----MAMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGT-AM 361 (998)
Q Consensus 289 ~iiv-TtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~-~l 361 (998)
|||| ||...+-. +.-..+..+++.--+.+.-..||..+.+.... ..+..+|.+...|.-+.-..++. +|
T Consensus 339 RIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~----h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 339 RIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEED----HRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred eEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCC----cchhHHHHHHhhcCccCHHHHHHHHh
Confidence 5654 66543321 11123456788888999999999998865432 23455666655555444444444 44
Q ss_pred cCC
Q 001897 362 RGK 364 (998)
Q Consensus 362 ~~~ 364 (998)
+.+
T Consensus 415 ~~~ 417 (457)
T KOG0743|consen 415 KNK 417 (457)
T ss_pred hcc
Confidence 444
No 252
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.66 E-value=0.025 Score=64.96 Aligned_cols=74 Identities=20% Similarity=0.225 Sum_probs=53.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
.-+++.++|++|+||||||..++++. .| .++=|.+|+..+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-------GY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-------GY-SVVEINASDERTAPMVKEKIENAVQNHS---------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-------Cc-eEEEecccccccHHHHHHHHHHHHhhcc---------------c
Confidence 45799999999999999999988752 22 4778899998888887777765543211 1
Q ss_pred H-HcCCeEEEEEcccccc
Q 001897 255 L-LRESNFLLILDDVWET 271 (998)
Q Consensus 255 l-~~~~r~LlVlDdv~~~ 271 (998)
+ .+.+..-+|+|.++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 1245778899998765
No 253
>PRK06921 hypothetical protein; Provisional
Probab=95.58 E-value=0.057 Score=56.99 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=29.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEe
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATV 217 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~ 217 (998)
....+.++|..|+|||+||.++++.+.. .....+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~----~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR----KKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh----hcCceEEEEEH
Confidence 4578999999999999999999987642 11234566664
No 254
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.5 Score=55.10 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=59.5
Q ss_pred CCCCcccccchHHHHHHHHHhhcC---------CC---ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEe
Q 001897 150 PGPSIEHQTTASKTLGKLMKLLDC---------DE---IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATV 217 (998)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~l~~---------~~---~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~ 217 (998)
|.-...+..|.++...+|++-+.- .+ ..-|.++|++|.|||-+||+|+.... .-|++|
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs----------L~FlSV 736 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS----------LNFLSV 736 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce----------eeEEee
Confidence 333334444666666667665532 22 34688999999999999999988632 345666
Q ss_pred CCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 001897 218 SKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
..+ +++...+ | .+ ++-.+++.++.+..+.+.|.||.++..
T Consensus 737 KGP----ELLNMYV---G------qS-E~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 737 KGP----ELLNMYV---G------QS-EENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred cCH----HHHHHHh---c------ch-HHHHHHHHHHhhccCCeEEEecccccc
Confidence 433 2222211 1 12 222344555555667999999998764
No 255
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.054 Score=59.45 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=51.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK-ELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
-.+++++|+.|+||||++.++....... .....+..++... .....+-++...+.++.+.....+..+....+ ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~---~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR---FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh---cCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HH
Confidence 4699999999999999999998764311 1123455555332 22345556666777776654333333333222 22
Q ss_pred HHcCCeEEEEEcccc
Q 001897 255 LLRESNFLLILDDVW 269 (998)
Q Consensus 255 l~~~~r~LlVlDdv~ 269 (998)
+. + +-++++|..-
T Consensus 213 l~-~-~DlVLIDTaG 225 (374)
T PRK14722 213 LR-N-KHMVLIDTIG 225 (374)
T ss_pred hc-C-CCEEEEcCCC
Confidence 32 2 4567789874
No 256
>PRK04296 thymidine kinase; Provisional
Probab=95.55 E-value=0.012 Score=58.78 Aligned_cols=111 Identities=15% Similarity=0.086 Sum_probs=59.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch--hhhHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM--EESMQRLGIRLHER 254 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~ 254 (998)
.++.|+|..|.||||+|..+..+.... -..++.+. ..++.+.....++++++.+... .....+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~-----g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER-----GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc-----CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-
Confidence 477899999999999999998875421 22233332 1112222233455556543221 1122333333333
Q ss_pred HHcCCeEEEEEcccccc--cccccccCCCCCCCCCcEEEEecCChH
Q 001897 255 LLRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKIILTSRSLE 298 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~ 298 (998)
..++.-+||+|.+.-. .+..++...+ ...|..||+|.++.+
T Consensus 75 -~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred -hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 2333458999998543 1122222111 235778999988743
No 257
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.54 E-value=0.025 Score=55.52 Aligned_cols=46 Identities=24% Similarity=0.217 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 156 HQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+..|-++.++.+--...+++.+-+.|.||+|+||||-+..+++.+-
T Consensus 28 dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 4455566677666566678899999999999999999988888764
No 258
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.54 E-value=0.083 Score=54.64 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=45.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
...+.++|.+|+|||+||.++++.+... -..+++++ ..++...+-.... . ...+ ...+.+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~-----g~~v~~it------~~~l~~~l~~~~~-~--~~~~----~~~~l~~l 160 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR-----GKSVLIIT------VADIMSAMKDTFS-N--SETS----EEQLLNDL 160 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEE------HHHHHHHHHHHHh-h--cccc----HHHHHHHh
Confidence 4578999999999999999999986532 23455554 3444444433321 0 0111 11233344
Q ss_pred HcCCeEEEEEcccccc
Q 001897 256 LRESNFLLILDDVWET 271 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~ 271 (998)
. +-=+|||||+...
T Consensus 161 ~--~~dlLvIDDig~~ 174 (244)
T PRK07952 161 S--NVDLLVIDEIGVQ 174 (244)
T ss_pred c--cCCEEEEeCCCCC
Confidence 3 2458899998554
No 259
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.53 E-value=0.062 Score=57.37 Aligned_cols=88 Identities=24% Similarity=0.251 Sum_probs=47.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
..++|+|+|++|+||||++..++..+... ..-..+..|+..... ...+.+....+.++.+.....+...+...+ +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~---~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l-~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE---HGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKAL-D 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH---cCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHH-H
Confidence 35799999999999999999998765421 011235556553321 223333444555555543333333333222 2
Q ss_pred HHHcCCeEEEEEccc
Q 001897 254 RLLRESNFLLILDDV 268 (998)
Q Consensus 254 ~l~~~~r~LlVlDdv 268 (998)
.+. + .=+|++|..
T Consensus 269 ~~~-~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLR-D-KDLILIDTA 281 (282)
T ss_pred Hcc-C-CCEEEEeCC
Confidence 332 2 347777753
No 260
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.50 E-value=0.089 Score=54.79 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=34.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQ 229 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 229 (998)
.-.++.|.|.+|+|||++|.++..... ..-..++||+... ++.++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-----~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-----QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCcEEEEEeeC--CHHHHHHH
Confidence 457999999999999999998754321 1234678888765 45555555
No 261
>PRK06547 hypothetical protein; Provisional
Probab=95.49 E-value=0.02 Score=55.98 Aligned_cols=33 Identities=30% Similarity=0.194 Sum_probs=27.2
Q ss_pred HHhhcCCCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 168 MKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 168 ~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...+......+|+|.|++|+||||+|+.+.+..
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 334456778899999999999999999998763
No 262
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.48 E-value=0.08 Score=57.34 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=41.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccc-cCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSS-AHRSGMVIWATVSKELNLRWVQAQIAERLNL 236 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (998)
.-.++.|+|.+|+||||++..++........ ...-..++|++....++...+ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 4578999999999999999988753221110 112236799999888888764 445565554
No 263
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.48 E-value=0.11 Score=56.66 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=42.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhcccc-CCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSA-HRSGMVIWATVSKELNLRWVQAQIAERLNL 236 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (998)
.-.++-|+|.+|+||||++.+++......... ..-..++||+....++...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 35788999999999999999997654311111 112379999999988887765 44555554
No 264
>PTZ00035 Rad51 protein; Provisional
Probab=95.48 E-value=0.1 Score=56.99 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=41.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhc-cccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRD-SSAHRSGMVIWATVSKELNLRWVQAQIAERLNL 236 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (998)
.-.++.|+|.+|+|||||+..++-...-. .....-..++|++....+++.++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 45789999999999999999886543210 01112345789998888887774 444566554
No 265
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.47 E-value=0.077 Score=55.52 Aligned_cols=83 Identities=24% Similarity=0.315 Sum_probs=50.7
Q ss_pred HHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHH
Q 001897 166 KLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQ 245 (998)
Q Consensus 166 ~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 245 (998)
.+.+++. +..-+.++|.+|+|||.||.++.+.+... --.+.++++ .++..++...... .
T Consensus 97 ~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-----g~sv~f~~~------~el~~~Lk~~~~~--------~ 155 (254)
T COG1484 97 SLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELLKA-----GISVLFITA------PDLLSKLKAAFDE--------G 155 (254)
T ss_pred HHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHHHc-----CCeEEEEEH------HHHHHHHHHHHhc--------C
Confidence 3444444 66789999999999999999999987521 223556644 4455555444431 1
Q ss_pred HHHHHHHHHHHcCCeEEEEEcccccc
Q 001897 246 RLGIRLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 246 ~~~~~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
....++.+.+. +-=||||||+-..
T Consensus 156 ~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 156 RLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred chHHHHHHHhh--cCCEEEEecccCc
Confidence 12223333332 2449999998543
No 266
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.47 E-value=0.051 Score=53.50 Aligned_cols=75 Identities=28% Similarity=0.308 Sum_probs=42.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
+..-+.++|..|+|||.||..+.+..... . ..+.|+++ .+++..+-. ... ..... ++.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~----g-~~v~f~~~------~~L~~~l~~----~~~-~~~~~----~~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK----G-YSVLFITA------SDLLDELKQ----SRS-DGSYE----ELLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT----T---EEEEEH------HHHHHHHHC----CHC-CTTHC----HHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC----C-cceeEeec------Cceeccccc----ccc-ccchh----hhcCc
Confidence 34679999999999999999998876432 1 23566654 344444322 111 11111 22333
Q ss_pred HHcCCeEEEEEcccccc
Q 001897 255 LLRESNFLLILDDVWET 271 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~ 271 (998)
+.+ -=||||||+-..
T Consensus 106 l~~--~dlLilDDlG~~ 120 (178)
T PF01695_consen 106 LKR--VDLLILDDLGYE 120 (178)
T ss_dssp HHT--SSCEEEETCTSS
T ss_pred ccc--ccEeccccccee
Confidence 432 458889998544
No 267
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.40 E-value=0.06 Score=59.62 Aligned_cols=90 Identities=21% Similarity=0.260 Sum_probs=53.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCH--HHHHHHHHHHhcCCcchhhhHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNL--RWVQAQIAERLNLDVKMEESMQRLGIRLH 252 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 252 (998)
..++|.++|+.|+||||.+..++..+..... ..-..+..+++. .+.. .+-++..++.++.+.....+.......+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~-~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSD-DKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhc-cCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH
Confidence 3579999999999999999999876542110 112234445544 3333 23355667777776544444444433333
Q ss_pred HHHHcCCeEEEEEcccc
Q 001897 253 ERLLRESNFLLILDDVW 269 (998)
Q Consensus 253 ~~l~~~~r~LlVlDdv~ 269 (998)
+ + . +.-++++|.+-
T Consensus 251 ~-~-~-~~DlVLIDTaG 264 (388)
T PRK12723 251 Q-S-K-DFDLVLVDTIG 264 (388)
T ss_pred H-h-C-CCCEEEEcCCC
Confidence 2 2 2 35688889874
No 268
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.40 E-value=0.2 Score=61.54 Aligned_cols=150 Identities=13% Similarity=0.155 Sum_probs=80.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
.+-|.++|++|.|||++|+++++.... .| +.+..+ + ++.... ..+ +.....+.+..
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~-----~f---i~v~~~------~----l~~~~v-----Ges-e~~i~~~f~~A 542 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGA-----NF---IAVRGP------E----ILSKWV-----GES-EKAIREIFRKA 542 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCC-----CE---EEEehH------H----Hhhccc-----CcH-HHHHHHHHHHH
Confidence 456889999999999999999986421 11 222211 1 111111 111 12233344444
Q ss_pred HcCCeEEEEEcccccccc--------------cccccCCCCC--CCCCcEEEEecCChHHHh-hc----CCCeEEEccCC
Q 001897 256 LRESNFLLILDDVWETID--------------LDSLGVPQPE--DHGGSKIILTSRSLEVCM-AM----KTDVEVRVDLL 314 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~~~--------------~~~l~~~l~~--~~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L 314 (998)
......+|+||+++.... ...+...+.. ...+-.||.||...+... .+ .-+..+.+...
T Consensus 543 ~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~P 622 (733)
T TIGR01243 543 RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPP 622 (733)
T ss_pred HhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCc
Confidence 444579999999864310 0111111111 123445666665443322 11 23467889999
Q ss_pred ChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 315 NDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 315 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
+.++-.++|..+.......+.. -...+++.+.|.-
T Consensus 623 d~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 623 DEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred CHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 9999999997766432222211 1356777777754
No 269
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.38 E-value=0.048 Score=53.97 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|+|..|.|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998754
No 270
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.4 Score=54.27 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=55.0
Q ss_pred cccchHHHHHHHHHhh---cCC---------CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCH
Q 001897 156 HQTTASKTLGKLMKLL---DCD---------EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNL 223 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l---~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~ 223 (998)
+..|.+..+.++.+.+ ... ..+-|.++|++|.|||.||+++++.... -++.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v----------Pf~~isAp--- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV----------PFLSISAP--- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC----------ceEeecch---
Confidence 3445555555555443 222 3567899999999999999999987542 23333322
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 001897 224 RWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
+|+....++ .++..+.+.+.-.+.-.+++++|+++-.
T Consensus 258 -----eivSGvSGE------SEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 -----EIVSGVSGE------SEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred -----hhhcccCcc------cHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 233332211 1233444555555556899999998654
No 271
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.36 E-value=0.73 Score=51.95 Aligned_cols=26 Identities=38% Similarity=0.353 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...+|.++|.+|+||||.|..++..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999998887764
No 272
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.36 E-value=0.019 Score=60.55 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHH
Q 001897 160 ASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLN 197 (998)
Q Consensus 160 ~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~ 197 (998)
+..+-.-.+++|.++++..|.+.|.+|.|||-||.+..
T Consensus 229 rn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 229 RNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred ccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHH
Confidence 33444446788899999999999999999999887653
No 273
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.36 E-value=0.056 Score=53.07 Aligned_cols=26 Identities=54% Similarity=0.562 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34689999999999999999997654
No 274
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.35 E-value=0.015 Score=58.51 Aligned_cols=25 Identities=56% Similarity=0.752 Sum_probs=22.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
||+|.|++|+||||+|+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999988753
No 275
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.33 E-value=0.015 Score=53.97 Aligned_cols=22 Identities=55% Similarity=0.786 Sum_probs=20.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHh
Q 001897 179 IGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 179 i~I~G~gG~GKTtLa~~v~~~~ 200 (998)
|+|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998873
No 276
>PRK04132 replication factor C small subunit; Provisional
Probab=95.32 E-value=0.31 Score=59.30 Aligned_cols=153 Identities=14% Similarity=0.046 Sum_probs=89.2
Q ss_pred CCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEE
Q 001897 184 LGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLL 263 (998)
Q Consensus 184 ~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~Ll 263 (998)
|.++||||+|..+++++-.+ ..-..++-+++|+..++..+...| ..+....+ +.+.+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~g~---~~~~~~lElNASd~rgid~IR~iI-k~~a~~~~---------------~~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELFGE---NWRHNFLELNASDERGINVIREKV-KEFARTKP---------------IGGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhhcc---cccCeEEEEeCCCcccHHHHHHHH-HHHHhcCC---------------cCCCCCEEE
Confidence 77999999999999875211 111236778888766665444333 22110000 011235799
Q ss_pred EEccccccc--ccccccCCCCCCCCCcEEEEecC-ChHHHhh-cCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHH
Q 001897 264 ILDDVWETI--DLDSLGVPQPEDHGGSKIILTSR-SLEVCMA-MKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPF 339 (998)
Q Consensus 264 VlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 339 (998)
|||+++... ..+.+...+-.-...+++|.+|. ...+... .+....+++.+++.++-...+.+.+..... .--++.
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i~~e~ 713 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEG 713 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CCCHHH
Confidence 999998773 33334333322223455555544 4444322 233468999999999888888776632221 112456
Q ss_pred HHHHHHHccCChHHHHH
Q 001897 340 AQAIARECKGLPLAIIT 356 (998)
Q Consensus 340 ~~~i~~~c~glPlai~~ 356 (998)
...|++.++|.+-.+..
T Consensus 714 L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 714 LQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 78999999998755433
No 277
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.32 E-value=0.094 Score=53.91 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=32.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN 222 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 222 (998)
.-.++.|.|.+|+||||+|.+++..... .-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~-----~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAG-----QGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEECCCCCH
Confidence 3578999999999999999999876432 123577887655553
No 278
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.32 E-value=0.13 Score=56.07 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=42.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccc-cCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSS-AHRSGMVIWATVSKELNLRWVQAQIAERLNL 236 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (998)
.-.++-|+|.+|+|||++|.+++-....... ...-..++||+....+++..+.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 4578899999999999999999765321111 01114799999999888877654 4455543
No 279
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.31 E-value=0.071 Score=52.51 Aligned_cols=24 Identities=46% Similarity=0.533 Sum_probs=21.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
++.++|++|+||||++..++..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999988765
No 280
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.31 E-value=0.052 Score=50.37 Aligned_cols=97 Identities=16% Similarity=0.398 Sum_probs=35.5
Q ss_pred CCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCCCCCc--cccCCCCCCe
Q 001897 535 CPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP--ALGGLTKLQD 611 (998)
Q Consensus 535 ~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp--~i~~l~~L~~ 611 (998)
|.++..+.+.. .+..++...|..+..|+.+.+.++ +..++. .+..+..|+.+.+.+ ....++ .+..+.+|+.
T Consensus 11 ~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp -TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECE
T ss_pred CCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccc
Confidence 44555555442 234455555555555666665543 444433 344444555555543 122222 2444555555
Q ss_pred eeecCCCCcccChh-hhcCcCCcEEeCC
Q 001897 612 LDLSATSIRELPRG-MENLSNLRRLNLS 638 (998)
Q Consensus 612 L~l~~~~l~~lp~~-i~~L~~L~~L~l~ 638 (998)
+++..+ +..++.. +.+. +|+.+.+.
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 555432 3333322 3333 44444443
No 281
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.29 E-value=0.095 Score=56.94 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=53.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
..++|+++|+.|+||||++..++..+... -..+.++++.... ...+-++..++.++.+.....+..++...+ +
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-----g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al-~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-----NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV-Q 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH-H
Confidence 46799999999999999999998765322 1245666654322 234455666776776544333444443333 2
Q ss_pred HHH-cCCeEEEEEcccc
Q 001897 254 RLL-RESNFLLILDDVW 269 (998)
Q Consensus 254 ~l~-~~~r~LlVlDdv~ 269 (998)
.+. .+..=++++|-.-
T Consensus 279 ~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 279 YMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHhcCCCCEEEEECCC
Confidence 332 1224577778763
No 282
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.27 E-value=0.062 Score=52.76 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999998754
No 283
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.26 E-value=0.17 Score=60.77 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=75.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLL 256 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 256 (998)
+-|.++|++|.|||++|+.+.+.... .| +.++.+ ++.... .+. ... ....+.....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~-----~f---~~is~~------~~~~~~---~g~------~~~-~~~~~f~~a~ 241 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV-----PF---FTISGS------DFVEMF---VGV------GAS-RVRDMFEQAK 241 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC-----CE---EEEehH------HhHHhh---hcc------cHH-HHHHHHHHHH
Confidence 45899999999999999999876421 11 223222 111110 010 011 1112222233
Q ss_pred cCCeEEEEEcccccccc----------------cccccCCCC--CCCCCcEEEEecCChHHHh-hc----CCCeEEEccC
Q 001897 257 RESNFLLILDDVWETID----------------LDSLGVPQP--EDHGGSKIILTSRSLEVCM-AM----KTDVEVRVDL 313 (998)
Q Consensus 257 ~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~ 313 (998)
.....+|++|+++.... +..+...+. ....+.-||.||...+... .. .-+..+.+..
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~ 321 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 321 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCC
Confidence 33478999999876411 011111111 1123445555776554422 11 2346788888
Q ss_pred CChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccC
Q 001897 314 LNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKG 349 (998)
Q Consensus 314 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g 349 (998)
-+.++-.+++..+.......+... ...+++.+.|
T Consensus 322 Pd~~~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G 355 (644)
T PRK10733 322 PDVRGREQILKVHMRRVPLAPDID--AAIIARGTPG 355 (644)
T ss_pred CCHHHHHHHHHHHhhcCCCCCcCC--HHHHHhhCCC
Confidence 888888888888774432222211 2345666655
No 284
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.25 E-value=0.062 Score=50.05 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=34.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCc
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDV 238 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 238 (998)
+|.|-|++|.||||+|+.+.+.+--. .| +.-.++++|++..|.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~----------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK----------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc----------ee------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999874311 11 34467888888887653
No 285
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.48 Score=47.32 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=23.6
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
+..+-|.++|++|.|||.||++|++.
T Consensus 187 dpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 46788999999999999999999986
No 286
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.21 E-value=0.029 Score=60.63 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=40.7
Q ss_pred ccchHHHHHHHHHhhcC------CCceEEEEEeCCCChHHHHHHHHHHHhhhc--cccCCCCeEEE
Q 001897 157 QTTASKTLGKLMKLLDC------DEIRRIGIWGLGGIGKTTLVKNLNNILKRD--SSAHRSGMVIW 214 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~~~~f~~~~w 214 (998)
..|.++.++++++++.. ...+++.++|++|+||||||+.+.+.+... ...+.|-..-|
T Consensus 53 ~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 44566777777777642 346899999999999999999998876432 12234444555
No 287
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.57 Score=53.81 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=69.7
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
+..+-|..+|++|.|||++|+++++.-.. . |+.++.. ++.....+ ..+.....+.+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~-----n-----Flsvkgp--------EL~sk~vG------eSEr~ir~iF~ 521 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGM-----N-----FLSVKGP--------ELFSKYVG------ESERAIREVFR 521 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcC-----C-----eeeccCH--------HHHHHhcC------chHHHHHHHHH
Confidence 35678999999999999999999986321 1 2333211 11111111 11222333333
Q ss_pred HHHcCCeEEEEEcccccccc-------------cccccCCCCCCCCCcEEEE---ecCChHHHhh-cC---CCeEEEccC
Q 001897 254 RLLRESNFLLILDDVWETID-------------LDSLGVPQPEDHGGSKIIL---TSRSLEVCMA-MK---TDVEVRVDL 313 (998)
Q Consensus 254 ~l~~~~r~LlVlDdv~~~~~-------------~~~l~~~l~~~~~gs~iiv---TtR~~~v~~~-~~---~~~~~~l~~ 313 (998)
.-+.--..++.||.++...- +..+..-+........|+| |-|...+-.. +. -+..+.+..
T Consensus 522 kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVpl 601 (693)
T KOG0730|consen 522 KARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPL 601 (693)
T ss_pred HHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecC
Confidence 33333468888887764311 1111111111111222332 3454444332 22 456788888
Q ss_pred CChHHHHHHHHHhhCC
Q 001897 314 LNDDEAWQLFSQNAGV 329 (998)
Q Consensus 314 L~~~~~~~lf~~~~~~ 329 (998)
=+.+--.++|+.++..
T Consensus 602 PD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 602 PDLEARLEILKQCAKK 617 (693)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 8888889999999844
No 288
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.0019 Score=64.99 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=64.5
Q ss_pred cccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh--hhhcccCCceE
Q 001897 512 VNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL--SLLQLHNCRAL 589 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~--~i~~l~~L~~L 589 (998)
..+++.|++.++.+..+.-+ .+.+.|.+|.++-| .++.+.+ +..+++|+.|.|..|.|..+-. .+.++++||.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvN-kIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVN-KISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHHH-HhcccceeEEeecc-ccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45788999999998765432 35788999999998 5666654 6889999999999999887754 56678888888
Q ss_pred eecCCCCCCC
Q 001897 590 LLRDCFYLED 599 (998)
Q Consensus 590 ~L~~~~~~~~ 599 (998)
.|..|.....
T Consensus 94 WL~ENPCc~~ 103 (388)
T KOG2123|consen 94 WLDENPCCGE 103 (388)
T ss_pred hhccCCcccc
Confidence 8877654443
No 289
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.13 E-value=0.1 Score=57.50 Aligned_cols=135 Identities=15% Similarity=0.123 Sum_probs=72.8
Q ss_pred HHHHHHHHhhc-CCCceE-EEEEeCCCChHHHHHHHHHHHhhhccccC----------------CCCeEEEEEeCCCCC-
Q 001897 162 KTLGKLMKLLD-CDEIRR-IGIWGLGGIGKTTLVKNLNNILKRDSSAH----------------RSGMVIWATVSKELN- 222 (998)
Q Consensus 162 ~~~~~l~~~l~-~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~~~~----------------~f~~~~wv~~s~~~~- 222 (998)
....++..+.. ..+..- +.++|++|+||||+|..+.+.+-...... ...-+..+..+....
T Consensus 8 ~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~ 87 (325)
T COG0470 8 EAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI 87 (325)
T ss_pred hHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC
Confidence 34455555554 344555 99999999999999999998765322111 123345555555444
Q ss_pred --HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc--cccccCCCCCCCCCcEEEEecC-Ch
Q 001897 223 --LRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID--LDSLGVPQPEDHGGSKIILTSR-SL 297 (998)
Q Consensus 223 --~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iivTtR-~~ 297 (998)
..+..+++.+....... .++.-++++|+++.... -..+...+-.....+++|++|. ..
T Consensus 88 ~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~ 150 (325)
T COG0470 88 DIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPS 150 (325)
T ss_pred cchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChh
Confidence 23334444433321110 23477899999987632 2233322323344667777776 23
Q ss_pred HHHh-hcCCCeEEEccC
Q 001897 298 EVCM-AMKTDVEVRVDL 313 (998)
Q Consensus 298 ~v~~-~~~~~~~~~l~~ 313 (998)
.+.. .-+....+++.+
T Consensus 151 ~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 151 KILPTIRSRCQRIRFKP 167 (325)
T ss_pred hccchhhhcceeeecCC
Confidence 3322 112234566665
No 290
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.12 E-value=0.045 Score=51.66 Aligned_cols=43 Identities=30% Similarity=0.344 Sum_probs=32.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHH
Q 001897 179 IGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQ 229 (998)
Q Consensus 179 i~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 229 (998)
|.++|++|+|||+||+.+++.+.. ...-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~--------~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR--------PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC--------EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc--------ceEEEEeccccccccceee
Confidence 678999999999999999987521 2445778887787777654
No 291
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.11 E-value=0.019 Score=46.44 Aligned_cols=23 Identities=43% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+|+|.|..|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 292
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.09 E-value=0.62 Score=53.86 Aligned_cols=180 Identities=14% Similarity=0.079 Sum_probs=99.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhh---ccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKR---DSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRL 251 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~---~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 251 (998)
.-..+.|.|.+|.|||..+..|.+.++. +.....|++ +.|+.-.-..+.++...|...+.+.... .......+
T Consensus 421 ~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y~~I~~~lsg~~~~---~~~al~~L 496 (767)
T KOG1514|consen 421 LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIYEKIWEALSGERVT---WDAALEAL 496 (767)
T ss_pred CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHHHHHHHhcccCccc---HHHHHHHH
Confidence 3458999999999999999999997652 222344654 4566666667999999999999765432 22223333
Q ss_pred HHHHH----cCCeEEEEEcccccccc--cccccCCCC-CCCCCcEEEEecCC--hH---------HHhhcCCCeEEEccC
Q 001897 252 HERLL----RESNFLLILDDVWETID--LDSLGVPQP-EDHGGSKIILTSRS--LE---------VCMAMKTDVEVRVDL 313 (998)
Q Consensus 252 ~~~l~----~~~r~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~iivTtR~--~~---------v~~~~~~~~~~~l~~ 313 (998)
..++. +++..++++|+++.... -+.+...|. ...++||++|-+-. .+ |+..+ ....+..+|
T Consensus 497 ~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~p 575 (767)
T KOG1514|consen 497 NFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRL-GLTRICFQP 575 (767)
T ss_pred HHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhc-cceeeecCC
Confidence 34443 34578999998765421 111111111 23457777665521 11 11111 123456667
Q ss_pred CChHHHHHHHHHhhCCCC--CCCCchHHHHHHHHHccCChHHHHHHHH
Q 001897 314 LNDDEAWQLFSQNAGVAA--SKDPIKPFAQAIARECKGLPLAIITMGT 359 (998)
Q Consensus 314 L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPlai~~~~~ 359 (998)
-+.++-.++...+..... .....+-++++++.--|-.-.|+.+.-+
T Consensus 576 Yth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 576 YTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred CCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 777776666665553221 1122333444444444444444444333
No 293
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.09 E-value=0.068 Score=52.14 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=61.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCC---eEEEEEeCCCCCH--HHHHHHHHHHhcCCcchhhhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSG---MVIWATVSKELNL--RWVQAQIAERLNLDVKMEESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~---~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 249 (998)
.-.+++|+|..|.|||||++.+........-.-.++ .+.++ .+.... ..+...+... ....-..-+...-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 346899999999999999999987543221100111 12222 222211 1222222110 1111112222333
Q ss_pred HHHHHHHcCCeEEEEEcccccccccc---cccCCCCCCCCCcEEEEecCChHHHhhcCCCeEEEc
Q 001897 250 RLHERLLRESNFLLILDDVWETIDLD---SLGVPQPEDHGGSKIILTSRSLEVCMAMKTDVEVRV 311 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~~~~~~---~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (998)
.+.+.+..+ .=++++|+.....+.. .+...+... +..||++|.+..... ..++.+.+
T Consensus 101 ~laral~~~-p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 101 AFARLLLHK-PKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHcC-CCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 445555554 6788999876543321 111111111 356888888776543 23444444
No 294
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.08 E-value=0.054 Score=51.36 Aligned_cols=26 Identities=42% Similarity=0.575 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34689999999999999999997753
No 295
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.07 E-value=0.072 Score=52.22 Aligned_cols=123 Identities=20% Similarity=0.217 Sum_probs=61.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccc--cC---CCC--eEEEEEeCCCCCHHHHHHHHHHHhcCCcc-hhh----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSS--AH---RSG--MVIWATVSKELNLRWVQAQIAERLNLDVK-MEE---- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~--~~---~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~~~---- 242 (998)
.-.+++|+|+.|.|||||.+.+..+ ...+ .. .|. .+.|+ .+ .+.++.++.... ...
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~--~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~ 87 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA--SGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLST 87 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc--CCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCc
Confidence 3468999999999999999988532 1111 00 111 12232 21 355666664321 110
Q ss_pred -hH-HHHHHHHHHHHHcC-CeEEEEEccccccccc---ccccCCCCC-CCCCcEEEEecCChHHHhhcCCCeEEEc
Q 001897 243 -SM-QRLGIRLHERLLRE-SNFLLILDDVWETIDL---DSLGVPQPE-DHGGSKIILTSRSLEVCMAMKTDVEVRV 311 (998)
Q Consensus 243 -~~-~~~~~~l~~~l~~~-~r~LlVlDdv~~~~~~---~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (998)
+. +.....+.+.+..+ ..=++++|+.....+. +.+...+.. ...|..||++|.+.+.... ++..+.+
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 11 11222233444332 1457788987554332 111111111 1246678999988776542 4455554
No 296
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.07 E-value=0.031 Score=57.28 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.|.|.|++|+||||+|+.+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998864
No 297
>PRK08233 hypothetical protein; Provisional
Probab=95.05 E-value=0.019 Score=57.17 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+|+|.|.+|+||||+|+.++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998765
No 298
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.04 E-value=0.064 Score=54.96 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..++|+|+.|.|||||.+.+..-++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 7899999999999999999987443
No 299
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.02 E-value=0.16 Score=53.55 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=29.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK 219 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~ 219 (998)
.-.++.|.|.+|+|||++|.++...... .-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~-----~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS-----RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh-----CCCcEEEEEecC
Confidence 3468999999999999999998554321 123578888764
No 300
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.01 E-value=0.058 Score=54.28 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=32.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccc-c----CCCCeEEEEEeCCCCCHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSS-A----HRSGMVIWATVSKELNLRWVQAQIA 231 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-~----~~f~~~~wv~~s~~~~~~~~~~~i~ 231 (998)
.++.|.|++|+||||++.++...+..... . ..-..++|++.... ..++.+.+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 58899999999999999999887653210 0 01235778877665 334444443
No 301
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.061 Score=51.70 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.++.|.|+.|+|||||++.++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367899999999999999999886
No 302
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.99 E-value=0.023 Score=57.98 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=24.2
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998875
No 303
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.98 E-value=0.15 Score=54.01 Aligned_cols=58 Identities=29% Similarity=0.372 Sum_probs=36.6
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHH--HHHHHHHHHhcCC
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLR--WVQAQIAERLNLD 237 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~ 237 (998)
.+.++|.++|++|+||||.+..++..++.. -..+..+++. .+... +-++..++..+.+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~-----g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~ 129 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ-----GKSVLLAAGD-TFRAAAIEQLEEWAKRLGVD 129 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-----CCEEEEEeCC-CCCHHHHHHHHHHHHhCCeE
Confidence 346899999999999999999988766421 1245556543 33332 3334445555543
No 304
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.95 E-value=0.15 Score=55.31 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=28.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEe
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATV 217 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~ 217 (998)
.-+.++|..|+|||+||..+++.+... -..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~-----g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR-----GKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC-----CCeEEEEEH
Confidence 779999999999999999999976532 224666655
No 305
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.15 Score=53.02 Aligned_cols=28 Identities=39% Similarity=0.411 Sum_probs=24.7
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhc
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRD 203 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 203 (998)
-|+|.++|++|.|||+|++++++++...
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4789999999999999999999987543
No 306
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.92 E-value=0.067 Score=50.74 Aligned_cols=27 Identities=41% Similarity=0.367 Sum_probs=23.7
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
..||-|.|.+|+||||||+++...+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~ 28 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFA 28 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 358899999999999999999998764
No 307
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.92 E-value=0.061 Score=57.92 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=55.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+-+.++|..|+|||.||.++++.+.. ..+ .+.+++++ ++..++...... .+.. ...+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~----~g~-~v~~~~~~------~l~~~lk~~~~~-----~~~~----~~l~~ 214 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAK----KGV-SSTLLHFP------EFIRELKNSISD-----GSVK----EKIDA 214 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH----cCC-CEEEEEHH------HHHHHHHHHHhc-----CcHH----HHHHH
Confidence 4567999999999999999999998753 222 35566553 444444443321 1111 12223
Q ss_pred HHcCCeEEEEEcccccc--ccccc--ccCCC-CCC-CCCcEEEEecC
Q 001897 255 LLRESNFLLILDDVWET--IDLDS--LGVPQ-PED-HGGSKIILTSR 295 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~gs~iivTtR 295 (998)
+. +-=||||||+-.. .+|.. +...+ ... ..+-.+|+||.
T Consensus 215 l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 215 VK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred hc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 32 3569999998543 34532 22211 111 12445777775
No 308
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.89 E-value=0.18 Score=48.10 Aligned_cols=116 Identities=20% Similarity=0.123 Sum_probs=59.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC---CCCHHHHHHHHH--H--HhcCC-----cchhhh-
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK---ELNLRWVQAQIA--E--RLNLD-----VKMEES- 243 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~--~--~l~~~-----~~~~~~- 243 (998)
.+|-|++..|.||||+|...+-+... ..+ .+.++..-+ ..+...+++.+- . +.+.. .+...+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~----~g~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG----HGY-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH----CCC-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHH
Confidence 46788899999999999988766432 222 233333322 233444443330 0 00000 001111
Q ss_pred --HHHHHHHHHHHHHcCCeEEEEEccccccc-----ccccccCCCCCCCCCcEEEEecCCh
Q 001897 244 --MQRLGIRLHERLLRESNFLLILDDVWETI-----DLDSLGVPQPEDHGGSKIILTSRSL 297 (998)
Q Consensus 244 --~~~~~~~l~~~l~~~~r~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~iivTtR~~ 297 (998)
........++.+..++-=|+|||++-... +.+.+...+.....+.-||+|.|+.
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11122223344445445699999985442 2333333333344567899999974
No 309
>PTZ00301 uridine kinase; Provisional
Probab=94.88 E-value=0.025 Score=57.12 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=23.0
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..+|+|.|.+|+||||+|+.+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 36899999999999999999987764
No 310
>PRK14974 cell division protein FtsY; Provisional
Probab=94.84 E-value=0.13 Score=55.84 Aligned_cols=90 Identities=21% Similarity=0.185 Sum_probs=48.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCH--HHHHHHHHHHhcCCcchh---hhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNL--RWVQAQIAERLNLDVKME---ESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~---~~~~~~~~ 249 (998)
+..+|.++|++|+||||++..++..++. ..+ .++.+. .+.+.. .+-++..++.++.+.... .+......
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~----~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~ 212 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK----NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAY 212 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH----cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHH
Confidence 4689999999999999998888876643 223 233343 333332 233455667776543211 12222222
Q ss_pred HHHHHHHcCCeEEEEEccccc
Q 001897 250 RLHERLLRESNFLLILDDVWE 270 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~ 270 (998)
...+.......=++++|-.-.
T Consensus 213 ~ai~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 213 DAIEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHHHhCCCCEEEEECCCc
Confidence 222222222133888888743
No 311
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.84 E-value=0.21 Score=47.67 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=21.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
||.|+|.+|+||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999987653
No 312
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.83 E-value=0.12 Score=52.89 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+|+|.|.+|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999988764
No 313
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.82 E-value=0.1 Score=58.98 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=48.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN--LRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
-+++.++|++|+||||++..++..+.. ...-..+..|+... +. ..+-++...+.++.+.....+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~---~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYAL---LYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH---hcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH
Confidence 369999999999999999888765430 01123466666533 22 1223334455566554333333344333332
Q ss_pred HHHcCCeEEEEEccc
Q 001897 254 RLLRESNFLLILDDV 268 (998)
Q Consensus 254 ~l~~~~r~LlVlDdv 268 (998)
+. ..=++|+|..
T Consensus 297 -~~--~~DlVlIDt~ 308 (424)
T PRK05703 297 -LR--DCDVILIDTA 308 (424)
T ss_pred -hC--CCCEEEEeCC
Confidence 22 2457888965
No 314
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.81 E-value=0.027 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHH
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999765
No 315
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.078 Score=60.73 Aligned_cols=74 Identities=26% Similarity=0.204 Sum_probs=48.5
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC--CHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL--NLRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
..-|.|.|+.|+|||+||+++++.+. +...-.+.+|+++.-. ....+|+.+...+ .+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~----k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf-----------------se 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS----KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF-----------------SE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc----cccceEEEEEechhccchhHHHHHHHHHHHH-----------------HH
Confidence 35688999999999999999999754 3444456777776432 3444444443222 12
Q ss_pred HHHcCCeEEEEEcccccc
Q 001897 254 RLLRESNFLLILDDVWET 271 (998)
Q Consensus 254 ~l~~~~r~LlVlDdv~~~ 271 (998)
.+.- ..-+|||||++-.
T Consensus 490 ~~~~-~PSiIvLDdld~l 506 (952)
T KOG0735|consen 490 ALWY-APSIIVLDDLDCL 506 (952)
T ss_pred HHhh-CCcEEEEcchhhh
Confidence 2222 3889999998643
No 316
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.80 E-value=0.17 Score=52.70 Aligned_cols=53 Identities=21% Similarity=0.096 Sum_probs=36.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (998)
.-.++.|.|.+|+|||++|.++...... .=..++|++..+. +.++.+.+ ++++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~-----~g~~~~y~~~e~~--~~~~~~~~-~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK-----QGKKVYVITTENT--SKSYLKQM-ESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh-----CCCEEEEEEcCCC--HHHHHHHH-HHCC
Confidence 4578999999999999999998554211 2346888888654 45555553 3344
No 317
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.79 E-value=0.028 Score=55.97 Aligned_cols=28 Identities=43% Similarity=0.574 Sum_probs=24.7
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+.+.+|||.|.+|+||||+|+.++..+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 3467999999999999999999998764
No 318
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.78 E-value=0.12 Score=55.29 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=51.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-----hhhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-----EESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~ 249 (998)
.-+++-|+|+.|+||||||..+...... .-..++|++....+++.. ++++|.+.+. ....++...
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~-----~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~ 121 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQK-----QGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALW 121 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH-----TT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhc-----ccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHH
Confidence 3469999999999999999999876542 245689999988776643 3445543321 112233333
Q ss_pred HHHHHHHcCCeEEEEEcccccc
Q 001897 250 RLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
.+.+.++.+.--++|+|.|-..
T Consensus 122 ~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 122 IAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHHTTSESEEEEE-CTT-
T ss_pred HHHHHhhcccccEEEEecCccc
Confidence 3333345555568999998665
No 319
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.74 E-value=0.23 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..-+.++|+.|+||||+|+.+...+-
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 44688999999999999999988764
No 320
>PRK07667 uridine kinase; Provisional
Probab=94.72 E-value=0.049 Score=54.66 Aligned_cols=28 Identities=43% Similarity=0.531 Sum_probs=24.4
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
++..+|+|.|.+|+||||+|+.+...+.
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3447999999999999999999988764
No 321
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.71 E-value=0.11 Score=55.77 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+.++|||++|.|||.+|+++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999975
No 322
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.70 E-value=0.03 Score=56.96 Aligned_cols=28 Identities=36% Similarity=0.391 Sum_probs=24.1
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+...+|+|+|++|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999987653
No 323
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.69 E-value=0.25 Score=51.03 Aligned_cols=53 Identities=21% Similarity=0.102 Sum_probs=34.4
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNL 236 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (998)
-.++.|.|.+|.||||+|.++......+ . ..+++++.. .+..++.+.+ .+++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~----g-~~~~yi~~e--~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN----G-YSVSYVSTQ--LTTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC----C-CcEEEEeCC--CCHHHHHHHH-HHhCC
Confidence 4599999999999999987765544211 1 345666633 3556666665 34443
No 324
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.18 Score=50.67 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
+..+-|.++|++|.|||-+|++|+|+
T Consensus 209 dppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcc
Confidence 34567889999999999999999986
No 325
>PRK06851 hypothetical protein; Provisional
Probab=94.67 E-value=0.51 Score=51.74 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC
Q 001897 173 CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE 220 (998)
Q Consensus 173 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~ 220 (998)
.+--+++.|.|.+|+|||||++.++..... ..++..++-|.+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~----~G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEE----RGFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHh----CCCeEEEEeCCCCC
Confidence 344588999999999999999999987642 45666666665544
No 326
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.67 E-value=0.056 Score=66.77 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..++.++|+.|+|||.+|+.++..+
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4478999999999999999998764
No 327
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.64 E-value=0.087 Score=52.23 Aligned_cols=119 Identities=25% Similarity=0.311 Sum_probs=62.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEE---EeCCCCCHHHHHH------HHHHHhcCCcchh----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWA---TVSKELNLRWVQA------QIAERLNLDVKME---- 241 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv---~~s~~~~~~~~~~------~i~~~l~~~~~~~---- 241 (998)
.-.+++|+|..|.|||||++.++..... ....+++ .+.. .+...... ++++.++......
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~------~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~ 96 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP------SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFN 96 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC------CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcc
Confidence 3468999999999999999999875322 1222332 2221 12222211 2455555432111
Q ss_pred --hhHHHHHHHHHHHHHcCCeEEEEEccccccccc---ccccCCCCC-CCC-CcEEEEecCChHHHh
Q 001897 242 --ESMQRLGIRLHERLLRESNFLLILDDVWETIDL---DSLGVPQPE-DHG-GSKIILTSRSLEVCM 301 (998)
Q Consensus 242 --~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~---~~l~~~l~~-~~~-gs~iivTtR~~~v~~ 301 (998)
..-+...-.+.+.+..+ .-++++|+.....+. +.+...+.. ... |..||++|.+.+...
T Consensus 97 ~LS~G~~qrl~laral~~~-p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 97 ELSGGERQRVLLARALAQE-PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 11122222344555554 788999987655332 122111111 112 567888888766543
No 328
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.64 E-value=0.11 Score=59.01 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=51.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEE-EEEeCCCC-CHHHHHHHHHHHh-----cCCcchhhhHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVI-WATVSKEL-NLRWVQAQIAERL-----NLDVKMEESMQRL 247 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~-wv~~s~~~-~~~~~~~~i~~~l-----~~~~~~~~~~~~~ 247 (998)
.-..++|+|++|+|||||++.+.+.+.. .+-++.+ .+-|.+.. .+.++.+.+-..+ ..+..........
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~----n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ 490 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITT----NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAEL 490 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhh----cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHH
Confidence 3457899999999999999999987542 2223333 33444332 3334433330000 0011111122333
Q ss_pred HHHHHHHH-HcCCeEEEEEcccccc
Q 001897 248 GIRLHERL-LRESNFLLILDDVWET 271 (998)
Q Consensus 248 ~~~l~~~l-~~~~r~LlVlDdv~~~ 271 (998)
+..+.+++ ..++.+||++|++...
T Consensus 491 ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 491 AIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHcCCCEEEEEeCchHH
Confidence 34444555 3567999999998644
No 329
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.63 E-value=0.012 Score=35.24 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=12.1
Q ss_pred CCCeeeecCCCCcccChhhhc
Q 001897 608 KLQDLDLSATSIRELPRGMEN 628 (998)
Q Consensus 608 ~L~~L~l~~~~l~~lp~~i~~ 628 (998)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355666666666666655443
No 330
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.61 E-value=0.03 Score=56.11 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+.++|.|+|++|+||||+|+.+...+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998753
No 331
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.61 E-value=0.066 Score=66.63 Aligned_cols=85 Identities=22% Similarity=0.274 Sum_probs=45.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
..++.++|+.|+|||++|+.+...... .-...+.++++...+...+ ...++.+.. ....++ ...+.+.+
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~-----~~~~~i~~d~s~~~~~~~~----~~l~g~~~g-~~g~~~-~g~l~~~v 663 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFD-----DEDAMVRIDMSEYMEKHSV----ARLIGAPPG-YVGYEE-GGQLTEAV 663 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcC-----CCCcEEEEechhhcccchH----HHhcCCCCC-ccCccc-ccHHHHHH
Confidence 457889999999999999999876421 1223455666543321111 111222111 000000 11233333
Q ss_pred HcCCeEEEEEcccccc
Q 001897 256 LRESNFLLILDDVWET 271 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~ 271 (998)
......+|+||++...
T Consensus 664 ~~~p~~vlllDeieka 679 (852)
T TIGR03346 664 RRKPYSVVLFDEVEKA 679 (852)
T ss_pred HcCCCcEEEEeccccC
Confidence 3333569999999765
No 332
>PRK06762 hypothetical protein; Provisional
Probab=94.60 E-value=0.031 Score=54.61 Aligned_cols=25 Identities=44% Similarity=0.488 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.++|.|.|++|+||||+|+.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998764
No 333
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.58 E-value=0.042 Score=62.54 Aligned_cols=48 Identities=15% Similarity=0.276 Sum_probs=38.8
Q ss_pred cccccchHHHHHHHHHhh------cCCCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 154 IEHQTTASKTLGKLMKLL------DCDEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l------~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+.+..|.++.++++++.+ .+..-+++.++|++|+||||||+.+.+-..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 334567788888888877 245668999999999999999999988654
No 334
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.57 E-value=0.14 Score=56.57 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=44.6
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN--LRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
..++.++|++|+||||++..++..+... ..+ .+..++. +.+. ....++..++.++.+.....+.. .+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~---~G~-~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~----~l~~ 293 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH---MGK-SVSLYTT-DNYRIAAIEQLKRYADTMGMPFYPVKDIK----KFKE 293 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh---cCC-eEEEecc-cchhhhHHHHHHHHHHhcCCCeeehHHHH----HHHH
Confidence 4689999999999999999998654211 111 2333333 3322 23344445566665443222222 2333
Q ss_pred HHHcCCeEEEEEcc
Q 001897 254 RLLRESNFLLILDD 267 (998)
Q Consensus 254 ~l~~~~r~LlVlDd 267 (998)
.+.....=++|+|-
T Consensus 294 ~l~~~~~D~VLIDT 307 (432)
T PRK12724 294 TLARDGSELILIDT 307 (432)
T ss_pred HHHhCCCCEEEEeC
Confidence 33322234588884
No 335
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.57 E-value=0.033 Score=49.70 Aligned_cols=24 Identities=50% Similarity=0.677 Sum_probs=20.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhh
Q 001897 179 IGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 179 i~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
|-|+|.+|+|||++|+.++.++..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999887653
No 336
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.57 E-value=0.012 Score=35.14 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=14.8
Q ss_pred CccEEEcCCCCCCCCChhhhc
Q 001897 562 ALRVLNLSGTRIHSLPLSLLQ 582 (998)
Q Consensus 562 ~Lr~L~l~~~~~~~lp~~i~~ 582 (998)
+|++||+++|+++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 337
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.56 E-value=0.22 Score=52.22 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=39.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQ 229 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 229 (998)
.-+++=|+|+.|.||||+|.+++-.... .-..++|++.-..+++..+.+-
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~-----~g~~a~fIDtE~~l~p~r~~~l 108 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQK-----PGGKAAFIDTEHALDPERAKQL 108 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhc-----CCCeEEEEeCCCCCCHHHHHHH
Confidence 4578899999999999999998665432 2337899999999998776543
No 338
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.28 Score=58.36 Aligned_cols=159 Identities=14% Similarity=0.184 Sum_probs=91.8
Q ss_pred cccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCC--CCeEEEEEeCCCCCHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHR--SGMVIWATVSKELNLRWVQAQIA 231 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i~ 231 (998)
+.+..||++++..+++.|....-.--.++|.+|||||++|.-++.++....+-.. ...++-.++ .
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~-------------g 235 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL-------------G 235 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH-------------H
Confidence 3445678899999999987654444457899999999999999888754433211 111221211 1
Q ss_pred HHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc--------cccccCCCCCCCCC--cEEEEecCChHHHh
Q 001897 232 ERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID--------LDSLGVPQPEDHGG--SKIILTSRSLEVCM 301 (998)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~--------~~~l~~~l~~~~~g--s~iivTtR~~~v~~ 301 (998)
.+..........++....+.+.+.+.++..|++|.+.+..- .+.-...-|.-..| ..|--||-+ +--+
T Consensus 236 -~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~-EYRk 313 (786)
T COG0542 236 -SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLD-EYRK 313 (786)
T ss_pred -HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHH-HHHH
Confidence 11111222335666667777777666699999999876521 11111111222233 234445532 2221
Q ss_pred hc-------CCCeEEEccCCChHHHHHHHHHhh
Q 001897 302 AM-------KTDVEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 302 ~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 327 (998)
.. .--+.+.++.-+.+++..+++-..
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 11 123578888888888888886654
No 339
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.54 E-value=0.081 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=20.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
.-..|+|+|+.|+|||||...+..
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999987764
No 340
>PRK03839 putative kinase; Provisional
Probab=94.51 E-value=0.031 Score=55.48 Aligned_cols=23 Identities=48% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.|.|+|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 341
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.50 E-value=0.045 Score=55.73 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999874
No 342
>PRK04328 hypothetical protein; Provisional
Probab=94.47 E-value=0.18 Score=52.87 Aligned_cols=54 Identities=11% Similarity=0.048 Sum_probs=35.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNL 236 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 236 (998)
.-.++.|.|.+|+|||+||.++..... ..-..++|++..+ ++.++.+ .+++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~-----~~ge~~lyis~ee--~~~~i~~-~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL-----QMGEPGVYVALEE--HPVQVRR-NMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCcEEEEEeeC--CHHHHHH-HHHHcCC
Confidence 457999999999999999998755421 1234578888766 3444433 3445553
No 343
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.45 E-value=0.075 Score=64.33 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=44.4
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
...+.++|+.|+|||++|+.++..+. ...+.++++....... +..-+|.+.. .... .....+.+.+
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~--------~~~i~id~se~~~~~~----~~~LiG~~~g-yvg~-~~~g~L~~~v 553 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALG--------IELLRFDMSEYMERHT----VSRLIGAPPG-YVGF-DQGGLLTDAV 553 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC--------CCcEEeechhhccccc----HHHHcCCCCC-cccc-cccchHHHHH
Confidence 45789999999999999999987642 1234455544322111 1122232211 0000 1111233334
Q ss_pred HcCCeEEEEEcccccc
Q 001897 256 LRESNFLLILDDVWET 271 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~ 271 (998)
.....-+++||+++..
T Consensus 554 ~~~p~sVlllDEieka 569 (758)
T PRK11034 554 IKHPHAVLLLDEIEKA 569 (758)
T ss_pred HhCCCcEEEeccHhhh
Confidence 4444679999999765
No 344
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.43 E-value=0.11 Score=51.00 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|+|..|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998754
No 345
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.42 E-value=0.079 Score=49.73 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=28.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK 219 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~ 219 (998)
++|.|+|..|+|||||++.+.+.+.. ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~----~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR----RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH----TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH----cCCceEEEEEccC
Confidence 58999999999999999999998763 3455555565544
No 346
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.57 Score=53.12 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=75.0
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
-..-|.+||++|.|||-||++|+|.-.- -|++|..+ +++...+ | ++ +...+.+.++
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~----------NFisVKGP----ELlNkYV---G------ES-ErAVR~vFqR 599 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGA----------NFISVKGP----ELLNKYV---G------ES-ERAVRQVFQR 599 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccC----------ceEeecCH----HHHHHHh---h------hH-HHHHHHHHHH
Confidence 3567889999999999999999996321 23444322 2222211 1 11 2223344445
Q ss_pred HHcCCeEEEEEcccccccc-------------cccccCCCC--CCCCCcEEEEecCChHHH-hhc----CCCeEEEccCC
Q 001897 255 LLRESNFLLILDDVWETID-------------LDSLGVPQP--EDHGGSKIILTSRSLEVC-MAM----KTDVEVRVDLL 314 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~gs~iivTtR~~~v~-~~~----~~~~~~~l~~L 314 (998)
-+..-.+.|.||.++.... ...+..-+. ....|.-||-.|...++. ..+ .-+....+..-
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 5555689999999865411 111211121 123455666666544442 222 12456778888
Q ss_pred ChHHHHHHHHHhhC
Q 001897 315 NDDEAWQLFSQNAG 328 (998)
Q Consensus 315 ~~~~~~~lf~~~~~ 328 (998)
+.+|-.++++....
T Consensus 680 n~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 680 NAEERVAILKTITK 693 (802)
T ss_pred CHHHHHHHHHHHhc
Confidence 88999999988875
No 347
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.38 E-value=0.16 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++++|.|+.|.||||+.+.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 899999999999999999987543
No 348
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.38 E-value=0.2 Score=50.03 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=30.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHH
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQ 229 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 229 (998)
++.|.|.+|+|||++|.++....... -..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-----g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-----GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-----CCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999986654311 23477887654 45555444
No 349
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.38 E-value=0.22 Score=51.90 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+-.|+|++|+|||+||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987654
No 350
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.37 E-value=0.063 Score=56.52 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=20.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
+.|.|+|.+|+||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999887654
No 351
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.37 E-value=0.075 Score=52.20 Aligned_cols=26 Identities=38% Similarity=0.399 Sum_probs=23.4
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..+|+|-||-|+||||||+.+.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998753
No 352
>PRK04040 adenylate kinase; Provisional
Probab=94.31 E-value=0.041 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=22.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+|+|+|++|+||||+++.+...+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998865
No 353
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.31 E-value=0.3 Score=50.96 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=59.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCcc------hhh-----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDVK------MEE----- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~------~~~----- 242 (998)
+-+.++|.|-.|+|||+|+..+.+...-. ....-+.++++-+.+.. ...++.+++.+.-..+.. .++
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~-~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVV-GEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhcc-ccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 34678999999999999999987753200 01234678888887654 456666666543221110 011
Q ss_pred -hHHHHHHHHHHHHHc--CCeEEEEEcccccc
Q 001897 243 -SMQRLGIRLHERLLR--ESNFLLILDDVWET 271 (998)
Q Consensus 243 -~~~~~~~~l~~~l~~--~~r~LlVlDdv~~~ 271 (998)
-....+..+.+++.. ++++|+++||+...
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 112233445666653 57999999998654
No 354
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.27 E-value=0.3 Score=49.41 Aligned_cols=88 Identities=23% Similarity=0.388 Sum_probs=52.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCc------chhh------
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE-LNLRWVQAQIAERLNLDV------KMEE------ 242 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~------~~~~------ 242 (998)
-..++|.|..|+|||+|+..+.+... -+.++++-+.+. ..+.++.+++...-..+. ..++
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~-------~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~ 87 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD-------ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARY 87 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT-------TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc-------ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHh
Confidence 36789999999999999999988642 344577777654 345566665543211110 0000
Q ss_pred hHHHHHHHHHHHHH-cCCeEEEEEccccc
Q 001897 243 SMQRLGIRLHERLL-RESNFLLILDDVWE 270 (998)
Q Consensus 243 ~~~~~~~~l~~~l~-~~~r~LlVlDdv~~ 270 (998)
-....+..+.+++. .++.+|+++||+..
T Consensus 88 ~~~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 88 RAPYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hhhccchhhhHHHhhcCCceeehhhhhHH
Confidence 01112223344443 45799999999843
No 355
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.23 E-value=0.31 Score=51.64 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=40.0
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (998)
+.-+++.|.|.+|+|||++|.++..... .....++||+..+. ..++.+...+ ++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~-----~~ge~vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA-----REGEPVLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH-----hcCCcEEEEEecCC--HHHHHHHHHH-cC
Confidence 3568999999999999999999977643 23677999988764 4555554433 44
No 356
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.23 E-value=0.089 Score=65.29 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=44.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLL 256 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 256 (998)
.++.++|+.|+|||+||+.+++.+-.. -...+.+++++-.+...+.+ .++.+.. ..... ....+.+.+.
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~-----~~~~~~~d~s~~~~~~~~~~----l~g~~~g-yvg~~-~~~~l~~~~~ 608 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGS-----EDAMIRLDMSEYMEKHTVSK----LIGSPPG-YVGYN-EGGQLTEAVR 608 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCC-----ccceEEEEchhccccccHHH----hcCCCCc-ccCcC-ccchHHHHHH
Confidence 467799999999999999998764211 12345555554332222211 1221110 00000 0112334444
Q ss_pred cCCeEEEEEcccccc
Q 001897 257 RESNFLLILDDVWET 271 (998)
Q Consensus 257 ~~~r~LlVlDdv~~~ 271 (998)
.+..-+++||+++..
T Consensus 609 ~~p~~VvllDeieka 623 (821)
T CHL00095 609 KKPYTVVLFDEIEKA 623 (821)
T ss_pred hCCCeEEEECChhhC
Confidence 443568999999765
No 357
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.22 E-value=0.13 Score=49.95 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=22.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
+.|-+.|.+|+||||+|++++..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46778999999999999999987753
No 358
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.21 E-value=0.097 Score=54.14 Aligned_cols=49 Identities=22% Similarity=0.179 Sum_probs=31.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH-hhhccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI-LKRDSSAHRSGMVIWATVSKELNLRWVQAQI 230 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 230 (998)
.-.++.|.|.+|+|||++|.++... .+. .=..++|++..+. ..++.+.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-----~ge~vlyvs~ee~--~~~l~~~~ 67 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-----FGEKVLYVSFEEP--PEELIENM 67 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HT--EEEEESSS---HHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-----cCCcEEEEEecCC--HHHHHHHH
Confidence 3479999999999999999987543 322 0234778877554 45554443
No 359
>PRK00625 shikimate kinase; Provisional
Probab=94.21 E-value=0.038 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.|.++||+|+||||+++.+.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998864
No 360
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.20 E-value=0.22 Score=56.32 Aligned_cols=93 Identities=23% Similarity=0.346 Sum_probs=58.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCc--------ch----h
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDV--------KM----E 241 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~----~ 241 (998)
.-..++|.|..|+|||||+..+...... ++-+.++++-+.+.. .+.++...+...-.... +. .
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~----~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R 217 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK----QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGAR 217 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh----hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHH
Confidence 4467999999999999999998876542 245777777776543 45566666554321110 00 0
Q ss_pred hhHHHHHHHHHHHHHc--CCeEEEEEcccccc
Q 001897 242 ESMQRLGIRLHERLLR--ESNFLLILDDVWET 271 (998)
Q Consensus 242 ~~~~~~~~~l~~~l~~--~~r~LlVlDdv~~~ 271 (998)
......+..+.+++.. ++++|+++||+...
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 218 MRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 1122334445666643 57999999999554
No 361
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.20 E-value=0.025 Score=58.46 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=18.3
Q ss_pred EEeCCCChHHHHHHHHHHHhh
Q 001897 181 IWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 181 I~G~gG~GKTtLa~~v~~~~~ 201 (998)
|+|++|+||||+++.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999988764
No 362
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.19 E-value=0.077 Score=54.93 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.4
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
....+|+|.|++|.|||||++.+...+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46789999999999999999999887653
No 363
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.14 E-value=0.18 Score=55.88 Aligned_cols=97 Identities=21% Similarity=0.269 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-
Q 001897 162 KTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM- 240 (998)
Q Consensus 162 ~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~- 240 (998)
.++++++.- .=..-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++. .-+++++...+.
T Consensus 69 ~eLD~vLgG-Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~-----g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l 139 (372)
T cd01121 69 EELDRVLGG-GLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-----GGKVLYVSGEES--PEQIK-LRADRLGISTENL 139 (372)
T ss_pred HHHHHhhcC-CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-----CCeEEEEECCcC--HHHHH-HHHHHcCCCcccE
Confidence 345555431 01134689999999999999999998765421 245778876543 33332 224455543211
Q ss_pred ----hhhHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 001897 241 ----EESMQRLGIRLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 241 ----~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
..+.+ .+.+.+...+.-++|+|.+...
T Consensus 140 ~l~~e~~le----~I~~~i~~~~~~lVVIDSIq~l 170 (372)
T cd01121 140 YLLAETNLE----DILASIEELKPDLVIIDSIQTV 170 (372)
T ss_pred EEEccCcHH----HHHHHHHhcCCcEEEEcchHHh
Confidence 11222 2333333334667888887543
No 364
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.10 E-value=0.34 Score=57.97 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=51.6
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN--LRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
.+||+++|+.|+||||.+..++..+... .....+..++.. .+. ..+-++...+.++.+.....+..+....+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~---~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al-~ 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR---EGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFAL-A 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH---cCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHH-H
Confidence 4799999999999999999888765311 111234455443 333 44556667777776654333444443333 3
Q ss_pred HHHcCCeEEEEEcccc
Q 001897 254 RLLRESNFLLILDDVW 269 (998)
Q Consensus 254 ~l~~~~r~LlVlDdv~ 269 (998)
.+.+ +=++++|-.-
T Consensus 260 ~~~~--~D~VLIDTAG 273 (767)
T PRK14723 260 ALGD--KHLVLIDTVG 273 (767)
T ss_pred HhcC--CCEEEEeCCC
Confidence 3332 3477778664
No 365
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.03 E-value=0.49 Score=51.69 Aligned_cols=87 Identities=22% Similarity=0.195 Sum_probs=53.3
Q ss_pred HHHHHHHhhcCC----CceEEEEEeCCCChHH-HHHHHHHHHhhhccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC
Q 001897 163 TLGKLMKLLDCD----EIRRIGIWGLGGIGKT-TLVKNLNNILKRDSSAHRSGMVIWATVSKE-LNLRWVQAQIAERLNL 236 (998)
Q Consensus 163 ~~~~l~~~l~~~----~~~vi~I~G~gG~GKT-tLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~ 236 (998)
....+..++.++ +-++|++||+.||||| |||+..+.-.. ...-..+..++...- ....+-++..++-++.
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~----~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~v 261 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVM----LKKKKKVAIITTDTYRIGAVEQLKTYADIMGV 261 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHh----hccCcceEEEEeccchhhHHHHHHHHHHHhCC
Confidence 344444444443 4789999999999999 56665554321 122334666766432 2344556667777888
Q ss_pred CcchhhhHHHHHHHHHH
Q 001897 237 DVKMEESMQRLGIRLHE 253 (998)
Q Consensus 237 ~~~~~~~~~~~~~~l~~ 253 (998)
+.....+..++...+..
T Consensus 262 p~~vv~~~~el~~ai~~ 278 (407)
T COG1419 262 PLEVVYSPKELAEAIEA 278 (407)
T ss_pred ceEEecCHHHHHHHHHH
Confidence 87766676666655543
No 366
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.03 E-value=0.16 Score=49.48 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.9
Q ss_pred EEEEeCCCChHHHHHHHHHHH
Q 001897 179 IGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 179 i~I~G~gG~GKTtLa~~v~~~ 199 (998)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999875
No 367
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.03 E-value=0.26 Score=55.30 Aligned_cols=91 Identities=24% Similarity=0.217 Sum_probs=50.0
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhc-----CCcchhh------h
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLN-----LDVKMEE------S 243 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-----~~~~~~~------~ 243 (998)
.-..++|+|..|+|||||++.+..... ....+++..-....++.++....+.... .-...++ .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~------pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~ 237 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA------FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRL 237 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC------CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHH
Confidence 346799999999999999988865321 1223444433334455554443333221 1001111 1
Q ss_pred HHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 244 MQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 244 ~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
....+..+.+++. .++.+|+++||+...
T Consensus 238 ~~~~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 238 APLTATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchHHH
Confidence 1222333445553 457999999998654
No 368
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.00 E-value=0.11 Score=53.29 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=68.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC-----CCCHHHHHHHHHHHhcCCcch------hhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK-----ELNLRWVQAQIAERLNLDVKM------EES 243 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~------~~~ 243 (998)
+-.+++|||..|.||||+++.+..-.... .. .+++.-.+ .....+-..++++..+.+... +-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-----~G-~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelS 111 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-----SG-EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELS 111 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-----Cc-eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccC
Confidence 45789999999999999999997754322 22 22222111 122334455666666654321 111
Q ss_pred HHHHHH-HHHHHHHcCCeEEEEEccccccccc---cc---ccCCCCCCCCCcEEEEecCChHHHhhcCC
Q 001897 244 MQRLGI-RLHERLLRESNFLLILDDVWETIDL---DS---LGVPQPEDHGGSKIILTSRSLEVCMAMKT 305 (998)
Q Consensus 244 ~~~~~~-~l~~~l~~~~r~LlVlDdv~~~~~~---~~---l~~~l~~~~~gs~iivTtR~~~v~~~~~~ 305 (998)
-.+.++ -+.+.+.- +.=++|.|..-...+. .. +...+ ....|-..+..|.+-.|+..+..
T Consensus 112 GGQrQRi~IARALal-~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 112 GGQRQRIGIARALAL-NPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred chhhhhHHHHHHHhh-CCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhhhcc
Confidence 222222 23344443 4889999987655332 11 11111 12236668888888888876654
No 369
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.96 E-value=4.4 Score=46.55 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=36.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERL 234 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 234 (998)
-.++.|-|.+|+|||++|..+....... .. ..++|++.. .+..++...++...
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~---~g-~~vl~~SlE--m~~~~i~~R~~~~~ 247 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK---EG-KPVAFFSLE--MSAEQLAMRMLSSE 247 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh---CC-CeEEEEeCc--CCHHHHHHHHHHHh
Confidence 3688899999999999999987764321 11 246666554 46677776666543
No 370
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.94 E-value=0.077 Score=56.30 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
....+|+|.|..|+||||+|+.+..-+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998876554
No 371
>PRK06217 hypothetical protein; Validated
Probab=93.92 E-value=0.11 Score=51.66 Aligned_cols=24 Identities=46% Similarity=0.482 Sum_probs=21.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..|.|.|.+|+||||+|+++...+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998875
No 372
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.87 E-value=0.12 Score=47.79 Aligned_cols=106 Identities=9% Similarity=0.271 Sum_probs=58.5
Q ss_pred CChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCCCCCc--cccCCCCCCeeeecCCCCcccChh-hh
Q 001897 552 VPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP--ALGGLTKLQDLDLSATSIRELPRG-ME 627 (998)
Q Consensus 552 l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp--~i~~l~~L~~L~l~~~~l~~lp~~-i~ 627 (998)
++...|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+.++ +..++ .+..+.+|+.+.+.+ .+..++.. +.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccc
Confidence 4556678888888888875 4666655 5677778888888763 55555 477777888888865 55555544 45
Q ss_pred cCcCCcEEeCCCCcccccccccccCCCCCccEEEccc
Q 001897 628 NLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTL 664 (998)
Q Consensus 628 ~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~ 664 (998)
.+.+|+.+.+..+ +..++...+.+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 5778888887553 455666656666 777776543
No 373
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.87 E-value=0.27 Score=54.91 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=53.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCcc------hhh-----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDVK------MEE----- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~------~~~----- 242 (998)
.-..++|+|..|+|||||++.++... ..+.++.+-+.+.. .+.++.+.++..-+.... .++
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-------~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R 233 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-------TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMR 233 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-------CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHH
Confidence 34679999999999999999987631 23455666665543 345555555433221110 000
Q ss_pred -hHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 243 -SMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 243 -~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
.....+..+.+++. .++++|+++||+...
T Consensus 234 ~~a~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 234 LKGCETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 11122333455553 457999999998654
No 374
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.87 E-value=0.35 Score=54.35 Aligned_cols=93 Identities=17% Similarity=0.320 Sum_probs=59.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCc--------ch----h
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDV--------KM----E 241 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~----~ 241 (998)
.-..++|.|..|+|||+|+..+...... .+-+.++++-+.+.. .+.++.+++...-.... +. .
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~----~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r 212 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG----QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGAR 212 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh----cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHH
Confidence 3467899999999999999998776431 234678888886554 35556666554321110 00 1
Q ss_pred hhHHHHHHHHHHHHHc--CCeEEEEEcccccc
Q 001897 242 ESMQRLGIRLHERLLR--ESNFLLILDDVWET 271 (998)
Q Consensus 242 ~~~~~~~~~l~~~l~~--~~r~LlVlDdv~~~ 271 (998)
......+..+.+++.. ++++|+++||+...
T Consensus 213 ~~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 213 FRVGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 1122334456677764 68999999998654
No 375
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.87 E-value=0.41 Score=43.24 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.9
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
+..-|++..|+.|+|||.+++.+++.+-.
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred CCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 45679999999999999999999888543
No 376
>PRK08149 ATP synthase SpaL; Validated
Probab=93.86 E-value=0.3 Score=54.66 Aligned_cols=90 Identities=13% Similarity=0.173 Sum_probs=52.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCc-------chhh----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK-ELNLRWVQAQIAERLNLDV-------KMEE---- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~~~---- 242 (998)
+-..++|+|..|+|||||++.++... .-+.++...+.. ..++.++..+......... ....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-------~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r 222 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-------EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDR 222 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-------CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHH
Confidence 45688999999999999999887642 223444444433 3345566665554322110 0000
Q ss_pred -hHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 243 -SMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 243 -~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
.....+..+.+++. .++++|+++||+...
T Consensus 223 ~~a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 223 CNAALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HhHHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 11122333445542 467999999998654
No 377
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.85 E-value=0.031 Score=50.42 Aligned_cols=22 Identities=45% Similarity=0.632 Sum_probs=17.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHh
Q 001897 179 IGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 179 i~I~G~gG~GKTtLa~~v~~~~ 200 (998)
|.|+|.+|+||||+|+.++..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 6799999999999999998864
No 378
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.85 E-value=0.043 Score=54.18 Aligned_cols=23 Identities=52% Similarity=0.667 Sum_probs=20.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+|+|.|.+|+||||+|+.+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998864
No 379
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.84 E-value=0.042 Score=54.74 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
||.|+|++|+||||+|+.+...+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998763
No 380
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.79 E-value=0.042 Score=55.54 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+|+|.|++|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997764
No 381
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.76 E-value=0.059 Score=54.27 Aligned_cols=110 Identities=9% Similarity=0.138 Sum_probs=54.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHH-HHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLR-WVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
.+|.|+|+.|.||||++..+...+... ....++. +.++.... .-...+..+-... .+.......+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~-----~~~~i~t-~e~~~E~~~~~~~~~i~q~~vg----~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN-----KTHHILT-IEDPIEFVHESKRSLINQREVG----LDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc-----CCcEEEE-EcCCccccccCccceeeecccC----CCccCHHHHHHHHh
Confidence 478999999999999999887764321 2223332 22211100 0000111111100 01112233344445
Q ss_pred HcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHH
Q 001897 256 LRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVC 300 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 300 (998)
..+ .=.+++|++.+.+.+...... ...|..++.|+....+.
T Consensus 72 r~~-pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQD-PDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCC-cCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 443 558999999776544332221 12366677777655443
No 382
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.71 E-value=0.51 Score=47.20 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=27.1
Q ss_pred hhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhc
Q 001897 170 LLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRD 203 (998)
Q Consensus 170 ~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 203 (998)
++......-|.+||--|+||++|+|++.+.+..+
T Consensus 79 F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 79 FAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred HHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 3344455678999999999999999999987643
No 383
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.71 E-value=0.068 Score=51.75 Aligned_cols=27 Identities=41% Similarity=0.422 Sum_probs=24.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+++|+|..|+|||||++.+...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999999988764
No 384
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.68 E-value=0.049 Score=51.55 Aligned_cols=20 Identities=50% Similarity=0.622 Sum_probs=18.7
Q ss_pred EEEEEeCCCChHHHHHHHHH
Q 001897 178 RIGIWGLGGIGKTTLVKNLN 197 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~ 197 (998)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999986
No 385
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.67 E-value=0.33 Score=54.30 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=59.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhh------ccc--cCCCCeEEEEEeCCCCCHHHHHHHHHHHhc-CCcc------
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKR------DSS--AHRSGMVIWATVSKELNLRWVQAQIAERLN-LDVK------ 239 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~------~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~------ 239 (998)
.-+.++|.|-.|+|||||+..+.+.... +.. ...-..++++-+.+.....+...+.+..-+ ....
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 4467899999999999999998876431 100 011115677777777666665665555544 2110
Q ss_pred -hhh-----hHHHHHHHHHHHHH--cCCeEEEEEcccccc
Q 001897 240 -MEE-----SMQRLGIRLHERLL--RESNFLLILDDVWET 271 (998)
Q Consensus 240 -~~~-----~~~~~~~~l~~~l~--~~~r~LlVlDdv~~~ 271 (998)
.+. .....+..+.+++. .++++|+++||+...
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 010 11223344667776 467999999998654
No 386
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.61 E-value=0.28 Score=51.51 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.|.++|++|+||||+|+.+...+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999988754
No 387
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.60 E-value=0.074 Score=52.47 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+|.|+|++|+||||+|+.++..+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999988764
No 388
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.56 E-value=0.058 Score=50.45 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.++|.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999888664
No 389
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.54 E-value=0.059 Score=53.46 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+++|+|+.|+||||+++.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999997764
No 390
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.52 E-value=0.35 Score=56.17 Aligned_cols=87 Identities=13% Similarity=0.038 Sum_probs=51.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch--------------
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-------------- 240 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------------- 240 (998)
.-.++.|.|.+|+|||||+.++...... .-..+++++..+ +..++...+ +.++.+...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~-----~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p 333 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA-----NKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYP 333 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEccc
Confidence 4579999999999999999999776432 123466666544 455665553 555543211
Q ss_pred -hhhHHHHHHHHHHHHHcCCeEEEEEcccc
Q 001897 241 -EESMQRLGIRLHERLLRESNFLLILDDVW 269 (998)
Q Consensus 241 -~~~~~~~~~~l~~~l~~~~r~LlVlDdv~ 269 (998)
....++....+.+.....+.-.+|+|.+.
T Consensus 334 ~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 334 ESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 01123444455555544334456666653
No 391
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.52 E-value=0.068 Score=52.71 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...|.|+|++|+||||+|+.++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998864
No 392
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.49 E-value=0.28 Score=47.26 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
.-..+.++|+.|.||||+.+.+|...+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 3468899999999999999999987653
No 393
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.49 E-value=0.16 Score=50.61 Aligned_cols=51 Identities=31% Similarity=0.391 Sum_probs=34.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcc
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVK 239 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 239 (998)
.|+|+|-||+||||+|..+...+... +.| .+.-|+...++++ .++||.+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~---~~~-~VLvVDaDpd~nL-------~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK---GGY-NVLVVDADPDSNL-------PEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc---CCc-eEEEEeCCCCCCh-------HHhcCCCCC
Confidence 68999999999999999866654321 223 3555776666554 445666543
No 394
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.45 E-value=0.12 Score=54.51 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=29.5
Q ss_pred HHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 167 LMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 167 l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..+++...+..+|.|+|.+|+|||||+..+.+.+.
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44555667899999999999999999999988754
No 395
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.43 Score=49.04 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=46.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
.+-|.++|++|.||+-||++|+.... .-|++||.. ++.. ..+| ..+.+...+.+-.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn----------STFFSvSSS----DLvS---KWmG-------ESEkLVknLFemA 221 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN----------STFFSVSSS----DLVS---KWMG-------ESEKLVKNLFEMA 221 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC----------CceEEeehH----HHHH---HHhc-------cHHHHHHHHHHHH
Confidence 67899999999999999999987532 123444432 1111 1222 1234555666666
Q ss_pred HcCCeEEEEEccccc
Q 001897 256 LRESNFLLILDDVWE 270 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~ 270 (998)
+..|.-.|.+|.++.
T Consensus 222 Re~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 222 RENKPSIIFIDEIDS 236 (439)
T ss_pred HhcCCcEEEeehhhh
Confidence 667789999999863
No 396
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.41 E-value=0.062 Score=53.09 Aligned_cols=24 Identities=50% Similarity=0.722 Sum_probs=21.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+|+|.|.+|+||||+|+.+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988764
No 397
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.41 E-value=0.46 Score=53.36 Aligned_cols=93 Identities=24% Similarity=0.432 Sum_probs=58.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCc------chhh-----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE-LNLRWVQAQIAERLNLDV------KMEE----- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~------~~~~----- 242 (998)
.-..++|.|..|+|||||+..+......+ +-..++++-+.+. ..+.++.+++...-.... ..+.
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~----~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R 217 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKE----HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGAR 217 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhc----CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 44678999999999999999987764322 2246777777554 345666666654321111 0011
Q ss_pred -hHHHHHHHHHHHHHc--CCeEEEEEcccccc
Q 001897 243 -SMQRLGIRLHERLLR--ESNFLLILDDVWET 271 (998)
Q Consensus 243 -~~~~~~~~l~~~l~~--~~r~LlVlDdv~~~ 271 (998)
.....+..+.+++.. ++++|+++||+...
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 218 MRVALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 112234456677744 57999999999654
No 398
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.40 E-value=0.059 Score=51.34 Aligned_cols=23 Identities=43% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+|.|.|.+|+||||+|+.+...+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 399
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.39 E-value=0.43 Score=50.95 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=36.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAER 233 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 233 (998)
-.++.|.|.+|+||||++.+++..... .+-..++|+++.. ...++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~----~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLIT----QHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH----hcCceEEEEEccc--CHHHHHHHHHHH
Confidence 358889999999999999998766432 1124578888765 445566555443
No 400
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.39 E-value=0.08 Score=53.84 Aligned_cols=31 Identities=32% Similarity=0.381 Sum_probs=26.8
Q ss_pred hhcCCCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 170 LLDCDEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 170 ~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+.+.++++|+++|..|+|||||..++....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999998753
No 401
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.36 E-value=0.32 Score=58.35 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=56.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-----hhhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-----EESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~ 249 (998)
.-+++-|.|.+|+||||||.+++..... .-..++|++....++.. .+++++.+.+. ..+.+....
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~-----~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~ 128 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQA-----AGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALE 128 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHH
Confidence 4578899999999999999887554321 13457999988877743 66777765321 112233333
Q ss_pred HHHHHHHcCCeEEEEEcccccc
Q 001897 250 RLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
.+......++--|+|+|.+...
T Consensus 129 ~i~~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 129 IADMLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HHHHHhhcCCCeEEEEcchhhh
Confidence 3444444555678999998643
No 402
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.36 E-value=0.43 Score=53.52 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=52.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCcc------hhh-----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDVK------MEE----- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~------~~~----- 242 (998)
.-..++|+|..|+|||||++.++.... .+.++.+-+.+.. .+.++....+..-+.... .+.
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~-------~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r 229 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD-------ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMR 229 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-------CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHH
Confidence 456889999999999999999887532 2445556565443 344555444433221110 001
Q ss_pred -hHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 243 -SMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 243 -~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
.....+..+.+++. .++.+|+++||+...
T Consensus 230 ~~a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 230 RQAAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 11222333455553 467999999998654
No 403
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.33 E-value=0.49 Score=51.07 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=51.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCCc--------ch----h
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVS-KELNLRWVQAQIAERLNLDV--------KM----E 241 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~--------~~----~ 241 (998)
.-..++|+|..|.|||||++.+..... -+..+..-+. ...++.++.......-+... +. .
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~-------~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r 140 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT-------ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLR 140 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC-------CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHH
Confidence 346789999999999999998876422 2333344443 33455555555544322111 00 0
Q ss_pred hhHHHHHHHHHHHH-HcCCeEEEEEcccccc
Q 001897 242 ESMQRLGIRLHERL-LRESNFLLILDDVWET 271 (998)
Q Consensus 242 ~~~~~~~~~l~~~l-~~~~r~LlVlDdv~~~ 271 (998)
.-....+..+.+++ ..++.+|+++||+...
T Consensus 141 ~~~~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 141 VKAAYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 01112233344444 2467999999998654
No 404
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.32 E-value=0.12 Score=50.33 Aligned_cols=43 Identities=26% Similarity=0.259 Sum_probs=31.5
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN 222 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 222 (998)
..++.+.|+.|+|||.+|+.+...+.. +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~----~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV----GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-----SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc----CCccchHHHhhhcccc
Confidence 467889999999999999999887531 2244566777765444
No 405
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.30 E-value=0.69 Score=47.90 Aligned_cols=53 Identities=21% Similarity=0.183 Sum_probs=34.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (998)
.-.++.|.|.+|+||||+|.++...... .-..++|++... +..++.+. +++++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~-----~g~~~~~is~e~--~~~~i~~~-~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR-----DGDPVIYVTTEE--SRESIIRQ-AAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh-----cCCeEEEEEccC--CHHHHHHH-HHHhC
Confidence 3479999999999999999987654321 134578887744 33444433 44444
No 406
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.29 E-value=0.27 Score=56.07 Aligned_cols=181 Identities=17% Similarity=0.119 Sum_probs=92.1
Q ss_pred chHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 001897 159 TASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLD 237 (998)
Q Consensus 159 ~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 237 (998)
|.+.....|..++..+++ .--...|+-|+||||+|+-++..+.... + ....+++.-...+.|...-..+
T Consensus 20 GQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~---------~-~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 20 GQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN---------G-PTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred ccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC---------C-CCCCcchhhhhhHhhhcCCccc
Confidence 444455556666665543 3456799999999999999987654321 0 1112222222223332220000
Q ss_pred c---ch-hhhHHHHHHHHHHHH----HcCCeEEEEEcccccc--cccccccCCCCCCCCCcE-EEEecCChHHH-hhcCC
Q 001897 238 V---KM-EESMQRLGIRLHERL----LRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSK-IILTSRSLEVC-MAMKT 305 (998)
Q Consensus 238 ~---~~-~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-iivTtR~~~v~-~~~~~ 305 (998)
. +. ....-+-.+.+.+.. ..++-=..|+|.|.-. ..|..+...+-.--...+ |+.||-...+- ...+.
T Consensus 90 viEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSR 169 (515)
T COG2812 90 VIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSR 169 (515)
T ss_pred chhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhc
Confidence 0 00 000011122233322 1233447889998654 345554433321122334 44455444442 23344
Q ss_pred CeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCC
Q 001897 306 DVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGL 350 (998)
Q Consensus 306 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 350 (998)
...|.++.++.++-...+...+......- ..+...-|++..+|-
T Consensus 170 cq~f~fkri~~~~I~~~L~~i~~~E~I~~-e~~aL~~ia~~a~Gs 213 (515)
T COG2812 170 CQRFDFKRLDLEEIAKHLAAILDKEGINI-EEDALSLIARAAEGS 213 (515)
T ss_pred cccccccCCCHHHHHHHHHHHHHhcCCcc-CHHHHHHHHHHcCCC
Confidence 56899999999988888887774332222 234455566666663
No 407
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.29 E-value=0.38 Score=55.74 Aligned_cols=134 Identities=22% Similarity=0.198 Sum_probs=69.5
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhc--ccc-CCCCeEEEEEeCC-C--------------C-C-HHHHHHHHHHHhc
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRD--SSA-HRSGMVIWATVSK-E--------------L-N-LRWVQAQIAERLN 235 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~~-~~f~~~~wv~~s~-~--------------~-~-~~~~~~~i~~~l~ 235 (998)
-..|+|+|+.|+|||||.+.+....... .+. +.--.+.++.-.. . + + ...-.+..+.+++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 3579999999999999999997654322 010 1111122222111 0 0 1 1333444555555
Q ss_pred CCcchhh------hHHHHHHHHHHHHHcCCeEEEEEccccccccccc---ccCCCCCCCCCcEEEEecCChHHHhhcCCC
Q 001897 236 LDVKMEE------SMQRLGIRLHERLLRESNFLLILDDVWETIDLDS---LGVPQPEDHGGSKIILTSRSLEVCMAMKTD 306 (998)
Q Consensus 236 ~~~~~~~------~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~---l~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 306 (998)
.+.+... +-.+..+-....+.-.+.=+||||.-.+..|.+. +...+.. -+|+ ||+.|.++....... .
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~Gt-vl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEGT-VLLVSHDRYFLDRVA-T 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCCe-EEEEeCCHHHHHhhc-c
Confidence 4432211 1122222222333333477999998877654432 2222221 2355 888999988877654 3
Q ss_pred eEEEcc
Q 001897 307 VEVRVD 312 (998)
Q Consensus 307 ~~~~l~ 312 (998)
..+.++
T Consensus 505 ~i~~~~ 510 (530)
T COG0488 505 RIWLVE 510 (530)
T ss_pred eEEEEc
Confidence 455554
No 408
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=93.28 E-value=0.39 Score=44.34 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=23.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
.+|.|.|.+|.||||+++++.+.+..
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~ 38 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGL 38 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCC
Confidence 48999999999999999999987653
No 409
>PRK13949 shikimate kinase; Provisional
Probab=93.28 E-value=0.067 Score=52.26 Aligned_cols=24 Identities=50% Similarity=0.497 Sum_probs=21.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+-|.|+|++|+||||+++.++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998864
No 410
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.22 E-value=0.54 Score=53.00 Aligned_cols=93 Identities=24% Similarity=0.395 Sum_probs=57.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCc-------chh-----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDV-------KME----- 241 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~----- 241 (998)
.-..++|.|..|+|||||+..+......+ +-+.++++-+.+.. .+.++.+++...-.... ...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~----~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r 218 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE----HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGAR 218 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc----CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 44679999999999999999987664422 12457777775543 45666666654322110 000
Q ss_pred hhHHHHHHHHHHHHH--cCCeEEEEEcccccc
Q 001897 242 ESMQRLGIRLHERLL--RESNFLLILDDVWET 271 (998)
Q Consensus 242 ~~~~~~~~~l~~~l~--~~~r~LlVlDdv~~~ 271 (998)
......+..+.+++. .++++|+++||+...
T Consensus 219 ~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 219 LRVALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 011223344566663 467999999998654
No 411
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.22 E-value=0.21 Score=60.99 Aligned_cols=179 Identities=18% Similarity=0.190 Sum_probs=86.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH-hhhcc---c-------cCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI-LKRDS---S-------AHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEES 243 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~~~---~-------~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 243 (998)
+.+++.|.|+.|.||||+.+.+... +..+. + ...|+.+ +..+.. . +.+.+.+. +
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i-~~~i~~----~---~si~~~LS-------t 385 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI-FADIGD----E---QSIEQNLS-------T 385 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe-eeecCh----H---hHHhhhhh-------H
Confidence 4579999999999999999998665 11110 0 0011111 111111 0 11111110 1
Q ss_pred HHHHHHHHHHHHHc-CCeEEEEEccccccccc---ccc----cCCCCCCCCCcEEEEecCChHHHhhcCCCeE---EEcc
Q 001897 244 MQRLGIRLHERLLR-ESNFLLILDDVWETIDL---DSL----GVPQPEDHGGSKIILTSRSLEVCMAMKTDVE---VRVD 312 (998)
Q Consensus 244 ~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~~~---~~l----~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~---~~l~ 312 (998)
......++...+.. .++-|+++|..-...+. ..+ ...+ ...|+.+|+||...++......... ..+.
T Consensus 386 fS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~ 463 (771)
T TIGR01069 386 FSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL 463 (771)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE
Confidence 11111122222221 24889999998665332 111 1122 1357899999999887553322111 1111
Q ss_pred CCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 001897 313 LLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAMRGKTNVKLWKHALKEWQ 378 (998)
Q Consensus 313 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~ 378 (998)
++.+ ....-.+...+ . .-...|-+|++++ |+|-.+.--|..+.... ..+.+.+++.+.
T Consensus 464 -~d~~-~l~p~Ykl~~G--~--~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~-~~~~~~li~~L~ 521 (771)
T TIGR01069 464 -FDEE-TLSPTYKLLKG--I--PGESYAFEIAQRY-GIPHFIIEQAKTFYGEF-KEEINVLIEKLS 521 (771)
T ss_pred -EcCC-CCceEEEECCC--C--CCCcHHHHHHHHh-CcCHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 1111 00000011101 1 1134577888777 78888888887775543 345666665554
No 412
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.19 E-value=0.074 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998763
No 413
>PRK13947 shikimate kinase; Provisional
Probab=93.17 E-value=0.072 Score=52.34 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=21.4
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
-|.|+|++|+||||+|+.+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988753
No 414
>PRK14530 adenylate kinase; Provisional
Probab=93.15 E-value=0.075 Score=54.43 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+.|.|+|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998764
No 415
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.13 E-value=0.067 Score=53.09 Aligned_cols=23 Identities=48% Similarity=0.504 Sum_probs=21.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
++|+|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999874
No 416
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=3 Score=41.83 Aligned_cols=134 Identities=16% Similarity=0.228 Sum_probs=70.1
Q ss_pred hhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHH
Q 001897 170 LLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGI 249 (998)
Q Consensus 170 ~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 249 (998)
.|.-.+.+-|.++|++|.|||-||++|++.- .+-|+.||.. +-+|+-|.+. ....+
T Consensus 175 aLGIaQPKGvlLygppgtGktLlaraVahht----------~c~firvsgs---elvqk~igeg-----------srmvr 230 (404)
T KOG0728|consen 175 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGS---ELVQKYIGEG-----------SRMVR 230 (404)
T ss_pred hcCCCCCcceEEecCCCCchhHHHHHHHhhc----------ceEEEEechH---HHHHHHhhhh-----------HHHHH
Confidence 3334467889999999999999999998852 2445666542 1222222110 01111
Q ss_pred HHHHHHHcCCeEEEEEcccccccc----------------cccccCCCC--CCCCCcEEEEecCChHHHhh--c---CCC
Q 001897 250 RLHERLLRESNFLLILDDVWETID----------------LDSLGVPQP--EDHGGSKIILTSRSLEVCMA--M---KTD 306 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~iivTtR~~~v~~~--~---~~~ 306 (998)
.+.--.+..-.-.|..|.++.... .-++...+. ...++-+||.+|..-++... . ..+
T Consensus 231 elfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgrid 310 (404)
T KOG0728|consen 231 ELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRID 310 (404)
T ss_pred HHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCccc
Confidence 222112223366777787764311 001111111 12345678887765544321 1 233
Q ss_pred eEEEccCCChHHHHHHHHHhh
Q 001897 307 VEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 307 ~~~~l~~L~~~~~~~lf~~~~ 327 (998)
..++..+-+++.-.++++-+.
T Consensus 311 rkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 311 RKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccCCCCCHHHHHHHHHHhh
Confidence 456777777666666665554
No 417
>PRK05922 type III secretion system ATPase; Validated
Probab=93.11 E-value=0.53 Score=52.76 Aligned_cols=90 Identities=20% Similarity=0.253 Sum_probs=51.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCcc------hh------
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK-ELNLRWVQAQIAERLNLDVK------ME------ 241 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~------~~------ 241 (998)
.-..++|+|..|+|||||++.+.... ..+..+.+-+.+ .....+...+.......... .+
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-------~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r 228 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-------KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTK 228 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-------CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHH
Confidence 44678999999999999999987642 123344444433 23344555444433322110 00
Q ss_pred hhHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 242 ESMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 242 ~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
.-....+..+.+++. .++++|+++||+...
T Consensus 229 ~~a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 229 VIAGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 011222334555553 457999999999654
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.09 E-value=0.077 Score=53.50 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=58.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchh---hhHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKME---ESMQRLGIRL 251 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l 251 (998)
..+++.|.|+.|.||||+.+.+.....-.. .+.| |.+.. .. -.+...|...++...... ........++
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~-~G~~-----vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~ 99 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQ-IGCF-----VPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSET 99 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHH-cCCC-----cchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHH
Confidence 348899999999999999998864321000 0111 11110 00 012222332332221111 1111111122
Q ss_pred HHHHH-cCCeEEEEEccccccc---cc----ccccCCCCCCCCCcEEEEecCChHHHhhcC
Q 001897 252 HERLL-RESNFLLILDDVWETI---DL----DSLGVPQPEDHGGSKIILTSRSLEVCMAMK 304 (998)
Q Consensus 252 ~~~l~-~~~r~LlVlDdv~~~~---~~----~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 304 (998)
...+. ..++-|+++|...... +. ..+...+. ..|+.+|++|...+++....
T Consensus 100 ~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 100 AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 22221 1247899999974331 11 11111221 23788999999998887654
No 419
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.79 Score=53.73 Aligned_cols=131 Identities=17% Similarity=0.154 Sum_probs=72.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+.|.++|++|.|||.||+++++.... .| +.+... + ++...- . ..+...+.+.+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~-----~f-----i~v~~~----~----l~sk~v-----G-esek~ir~~F~~ 330 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRS-----RF-----ISVKGS----E----LLSKWV-----G-ESEKNIRELFEK 330 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCC-----eE-----EEeeCH----H----Hhcccc-----c-hHHHHHHHHHHH
Confidence 4568999999999999999999985321 12 222111 1 111110 1 112223333333
Q ss_pred HHcCCeEEEEEccccccccccc-------------ccCCCC--CCCCCcEEEEecCChHHHh-hc----CCCeEEEccCC
Q 001897 255 LLRESNFLLILDDVWETIDLDS-------------LGVPQP--EDHGGSKIILTSRSLEVCM-AM----KTDVEVRVDLL 314 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~~~~-------------l~~~l~--~~~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L 314 (998)
-.......|.+|.++....+.. +...+. ....+..||-||-...... .+ .-+..+.+.+-
T Consensus 331 A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~p 410 (494)
T COG0464 331 ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLP 410 (494)
T ss_pred HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCC
Confidence 4445589999999875532211 111111 1122333454554332221 11 23457889999
Q ss_pred ChHHHHHHHHHhhCC
Q 001897 315 NDDEAWQLFSQNAGV 329 (998)
Q Consensus 315 ~~~~~~~lf~~~~~~ 329 (998)
+.++..+.|..+...
T Consensus 411 d~~~r~~i~~~~~~~ 425 (494)
T COG0464 411 DLEERLEIFKIHLRD 425 (494)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999998854
No 420
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.08 E-value=0.068 Score=51.20 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHH
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
+|.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999775
No 421
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.97 E-value=0.58 Score=47.59 Aligned_cols=26 Identities=42% Similarity=0.570 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|.|..|.|||||++.+..-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34689999999999999999997643
No 422
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.96 E-value=0.16 Score=46.79 Aligned_cols=26 Identities=38% Similarity=0.252 Sum_probs=23.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
-.+|.+.|.-|.||||+++.++..+.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998753
No 423
>PRK14529 adenylate kinase; Provisional
Probab=92.94 E-value=0.36 Score=49.16 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=20.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHh
Q 001897 179 IGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 179 i~I~G~gG~GKTtLa~~v~~~~ 200 (998)
|.|.|++|+||||+|+.++..+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999998865
No 424
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.92 E-value=0.49 Score=53.02 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=53.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCc-------chhh----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDV-------KMEE---- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~---- 242 (998)
+-..++|.|..|+|||||.+.+++.. .-+.++++-+.+.. .+.++....+..-+... ....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-------~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R 233 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-------EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMER 233 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-------CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHH
Confidence 45689999999999999999998752 23567777776543 34454444332211111 0000
Q ss_pred -hHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 243 -SMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 243 -~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
.....+..+.+++. .++++|+++||+...
T Consensus 234 ~~a~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 234 AKAGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11122333455553 457999999998654
No 425
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.89 E-value=0.72 Score=51.72 Aligned_cols=121 Identities=20% Similarity=0.206 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCc--------ch----hh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDV--------KM----EE 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~~----~~ 242 (998)
.-..++|+|..|+|||||++.++..... ...++...-.+...+.+..++.+..-+... +. ..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~------~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ 228 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA------DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQL 228 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC------CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHH
Confidence 4468899999999999999988775321 112333222233566666665554432211 00 00
Q ss_pred hHHHHHHHHHHHHH-cCCeEEEEEcccccccc-cccc---cCCCCCCCCCcEEEEecCChHHHhhc
Q 001897 243 SMQRLGIRLHERLL-RESNFLLILDDVWETID-LDSL---GVPQPEDHGGSKIILTSRSLEVCMAM 303 (998)
Q Consensus 243 ~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~~-~~~l---~~~l~~~~~gs~iivTtR~~~v~~~~ 303 (998)
.....+..+.+++. .++.+|+++||+....+ ..++ ....|. .|.-..+.|....++...
T Consensus 229 ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 229 RAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCC--CCeeeeeeccchhHHHHh
Confidence 11222333444443 45799999999876522 2222 122232 255556665555555443
No 426
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.88 E-value=0.5 Score=53.48 Aligned_cols=96 Identities=15% Similarity=0.210 Sum_probs=56.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCcc-------hh-----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE-LNLRWVQAQIAERLNLDVK-------ME----- 241 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-------~~----- 241 (998)
.-..++|.|..|+|||||+..+.+....+.....| .++++-+.+. ..+.++.+.+...-..... ..
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~-v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEF-AVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCce-EEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 34678999999999999999988753211000111 5666666554 3456666666533221110 00
Q ss_pred hhHHHHHHHHHHHHH--cCCeEEEEEcccccc
Q 001897 242 ESMQRLGIRLHERLL--RESNFLLILDDVWET 271 (998)
Q Consensus 242 ~~~~~~~~~l~~~l~--~~~r~LlVlDdv~~~ 271 (998)
.-..-.+..+.+++. .++++|+++||+...
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 011223444667776 467999999998654
No 427
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.88 E-value=4.1 Score=46.59 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001897 163 TLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERL 234 (998)
Q Consensus 163 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 234 (998)
.+++++.-+. .-.++.|-|.+|+|||++|..++..... ..-..++|++.. .+..++...++...
T Consensus 183 ~LD~~~~G~~--~g~liviag~pg~GKT~~al~ia~~~a~----~~g~~v~~fSlE--m~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 183 KLDRLTNGLV--KGDLIVIGARPSMGKTTLALNIAENVAL----REGKPVLFFSLE--MSAEQLGERLLASK 246 (421)
T ss_pred hHHHHhcCCC--CCceEEEEeCCCCCHHHHHHHHHHHHHH----hCCCcEEEEECC--CCHHHHHHHHHHHH
Confidence 4555554332 2357888999999999999999865431 112246666543 46777777766543
No 428
>PRK13975 thymidylate kinase; Provisional
Probab=92.83 E-value=0.095 Score=52.85 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=22.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..|.|.|+.|+||||+|+.+.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998763
No 429
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.83 E-value=0.89 Score=46.08 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.-.+++|.|+.|.|||||++.+.....
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 446899999999999999999977543
No 430
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.82 E-value=0.21 Score=51.81 Aligned_cols=61 Identities=25% Similarity=0.317 Sum_probs=43.3
Q ss_pred HHHHhhc--CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHH
Q 001897 166 KLMKLLD--CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQ 229 (998)
Q Consensus 166 ~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 229 (998)
+++..+. ..+..+|+|.|.||+||+||.-.+...+... ++--.++=|+-|.+++--.++-+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~---G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRER---GHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHC---CcEEEEEEECCCCCCCCcccccc
Confidence 4555443 3567899999999999999999998876542 44345666777777765555444
No 431
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.80 E-value=0.09 Score=50.38 Aligned_cols=24 Identities=42% Similarity=0.493 Sum_probs=21.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
|++|+|+.|+||||++..+...++
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998765
No 432
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.79 E-value=0.072 Score=29.46 Aligned_cols=16 Identities=44% Similarity=0.742 Sum_probs=7.1
Q ss_pred CCCeeeecCCCCcccC
Q 001897 608 KLQDLDLSATSIRELP 623 (998)
Q Consensus 608 ~L~~L~l~~~~l~~lp 623 (998)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655554
No 433
>PLN02924 thymidylate kinase
Probab=92.78 E-value=0.85 Score=46.59 Aligned_cols=27 Identities=33% Similarity=0.277 Sum_probs=24.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
-..|+|-|..|+||||+|+.+++.+..
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~ 42 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKG 42 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999988753
No 434
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.71 E-value=0.095 Score=50.41 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHh
Q 001897 179 IGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 179 i~I~G~gG~GKTtLa~~v~~~~ 200 (998)
|.|+|++|.||||+|+.+...+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998764
No 435
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.70 E-value=0.38 Score=54.76 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=36.6
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCCc
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN--LRWVQAQIAERLNLDV 238 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~ 238 (998)
..|++++|+.|+||||.+..++..+... ..-..+..++.. .+. ..+-++...+.++.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~~kV~LI~~D-t~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR---HGASKVALLTTD-SYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh---cCCCeEEEEeCC-ccchhHHHHHHHHHHHhCCCe
Confidence 3799999999999999999998765321 111234445443 332 3334455566666544
No 436
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.68 E-value=0.1 Score=50.68 Aligned_cols=24 Identities=50% Similarity=0.603 Sum_probs=20.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhh
Q 001897 179 IGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 179 i~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
|.|.|.+|+||||+++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988753
No 437
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.67 E-value=0.25 Score=50.52 Aligned_cols=62 Identities=26% Similarity=0.261 Sum_probs=36.7
Q ss_pred HHHHHhhc--CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHH
Q 001897 165 GKLMKLLD--CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQ 229 (998)
Q Consensus 165 ~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 229 (998)
.++++.+. ..+..+|+|.|++|+||+||...+...++.. ++--.++-|+-|.+++--.++-+
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~---g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER---GKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT---T--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc---CCceEEEEECCCCCCCCCccccc
Confidence 34444443 2467899999999999999999998887642 22234555666777765555443
No 438
>PRK14527 adenylate kinase; Provisional
Probab=92.65 E-value=0.11 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...+|.|+|++|+||||+|+.+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 439
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.61 E-value=0.11 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
..+|.|.|.+|+||||+|+.+..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 440
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.61 E-value=0.44 Score=53.33 Aligned_cols=90 Identities=22% Similarity=0.285 Sum_probs=50.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCCcc------hhh-----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVS-KELNLRWVQAQIAERLNLDVK------MEE----- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~------~~~----- 242 (998)
.-..++|+|..|+|||||++.+..... .+..+.+.+. +...+.++.+..+..-+.+.. .+.
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~-------~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r 211 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD-------ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMR 211 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC-------CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHH
Confidence 346899999999999999988876422 1222223333 333455555544433221110 000
Q ss_pred -hHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 243 -SMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 243 -~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
-....+..+.+++. .++++|+++||+...
T Consensus 212 ~~a~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 212 RQAAYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11122334555553 457999999998654
No 441
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.61 E-value=0.094 Score=55.49 Aligned_cols=59 Identities=27% Similarity=0.358 Sum_probs=35.6
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHH
Q 001897 164 LGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQA 228 (998)
Q Consensus 164 ~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 228 (998)
...+++.+...+ +-|.++|+.|+|||++++........ ..| .+.-++.+...+...+++
T Consensus 22 ~~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~----~~~-~~~~~~~s~~Tts~~~q~ 80 (272)
T PF12775_consen 22 YSYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDS----DKY-LVITINFSAQTTSNQLQK 80 (272)
T ss_dssp HHHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTT----CCE-EEEEEES-TTHHHHHHHH
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCc----ccc-ceeEeeccCCCCHHHHHH
Confidence 344566555554 45689999999999999998764321 111 234456665544544443
No 442
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.60 E-value=0.47 Score=53.18 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=52.6
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCc-------chhhh--
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK-ELNLRWVQAQIAERLNLDV-------KMEES-- 243 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~~~~-- 243 (998)
..-..++|+|..|+|||||++.+.+.. ..+..+++.+.+ ...+.+...+....-.... .....
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-------~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~ 225 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-------DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE 225 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-------CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHH
Confidence 345689999999999999999887642 244455555554 3344455555432111000 00001
Q ss_pred ---HHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 244 ---MQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 244 ---~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
....+..+.+++. .++++|+++||+...
T Consensus 226 r~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 226 RVRALFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 1122333455553 457999999998654
No 443
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.58 E-value=0.11 Score=51.01 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+.|.|+|+.|+||||+|+.+...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3569999999999999999998764
No 444
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.56 E-value=0.42 Score=51.43 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=35.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQI 230 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 230 (998)
+-..++|.|..|+|||+|++++.+. .+-+.++++-+.+.. .+.+++.++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~-------~~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKY-------SNSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhC-------CCCCEEEEEEeCCChHHHHHHHHHH
Confidence 3458999999999999999998874 224578888886643 455555554
No 445
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.55 E-value=0.87 Score=47.61 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=36.4
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAER 233 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 233 (998)
-.++.|.|.+|+|||++|.++....... +=..++|++... +..++...++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~----~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKK----QGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCceEEEeCCC--CHHHHHHHHHHH
Confidence 3689999999999999999987664321 123467777655 566666666543
No 446
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.54 E-value=0.095 Score=53.29 Aligned_cols=25 Identities=40% Similarity=0.345 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+|+|+|+.|+||||||+.++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999875
No 447
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.52 E-value=0.68 Score=51.87 Aligned_cols=87 Identities=20% Similarity=0.209 Sum_probs=47.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK-ELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
-.+|+++|+.|+||||++..+....... ...+.+..+.... .....+-+....+.++.+.....+..+....+ ..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~---~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al-~~ 266 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIR---HGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML-HE 266 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh---cCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH-HH
Confidence 4799999999999999999887643211 1122344444322 12233335556666676654333333333222 22
Q ss_pred HHcCCeEEEEEccc
Q 001897 255 LLRESNFLLILDDV 268 (998)
Q Consensus 255 l~~~~r~LlVlDdv 268 (998)
+. + .-++++|-.
T Consensus 267 l~-~-~d~VLIDTa 278 (420)
T PRK14721 267 LR-G-KHMVLIDTV 278 (420)
T ss_pred hc-C-CCEEEecCC
Confidence 32 2 445666764
No 448
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.51 E-value=0.17 Score=48.26 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHH
Q 001897 163 TLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 163 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.+++|.+.+.. +++.++|..|+|||||+..+...
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 35666666655 89999999999999999988764
No 449
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.49 E-value=0.44 Score=51.74 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHhh
Q 001897 179 IGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 179 i~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+.+.|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999988764
No 450
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.43 Score=51.74 Aligned_cols=87 Identities=23% Similarity=0.210 Sum_probs=55.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-hhhHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-EESMQRLGIRLHER 254 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~ 254 (998)
-.+|.|-|-+|+|||||..+++.++... . .+++|+-.+ ++.++ +--+++++.+... .--.+...+.+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~----~--~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~ 163 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKR----G--KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAE 163 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhc----C--cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHH
Confidence 3689999999999999999999987632 1 567775544 33332 2235566644321 11112223445555
Q ss_pred HHcCCeEEEEEcccccc
Q 001897 255 LLRESNFLLILDDVWET 271 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~ 271 (998)
+...+.-++|+|.+...
T Consensus 164 l~~~~p~lvVIDSIQT~ 180 (456)
T COG1066 164 LEQEKPDLVVIDSIQTL 180 (456)
T ss_pred HHhcCCCEEEEecccee
Confidence 65667899999998654
No 451
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.47 E-value=0.28 Score=47.80 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.+|.|.|.+|+||||+|..+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH
Confidence 36899999999999999999765
No 452
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.46 E-value=0.82 Score=49.55 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=24.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+|+++|++|+||||++..++..++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999988765
No 453
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.45 E-value=0.11 Score=45.60 Aligned_cols=22 Identities=41% Similarity=0.365 Sum_probs=19.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLN 197 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~ 197 (998)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999875
No 454
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.44 E-value=0.11 Score=47.31 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=19.4
Q ss_pred EEEEeCCCChHHHHHHHHHHH
Q 001897 179 IGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 179 i~I~G~gG~GKTtLa~~v~~~ 199 (998)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999875
No 455
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.43 E-value=0.093 Score=49.22 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.|+|+|+.|+|||||++.+...+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998753
No 456
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.41 E-value=0.14 Score=51.69 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=24.2
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+...+|+|+|++|+||||+|+.+...+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 566899999999999999999998865
No 457
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.41 E-value=0.79 Score=47.55 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=49.3
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch--hhhHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM--EESMQRLGIRL 251 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l 251 (998)
++.-|++.+|+.|+||.-+++.+++.....-.... ........+..+... +.-.+++..++
T Consensus 108 ~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~-----------------~V~~fvat~hFP~~~~ie~Yk~eL~~~v 170 (344)
T KOG2170|consen 108 RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP-----------------FVHHFVATLHFPHASKIEDYKEELKNRV 170 (344)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHhccccch-----------------hHHHhhhhccCCChHHHHHHHHHHHHHH
Confidence 35679999999999999999999887643211111 112222233222211 11223444455
Q ss_pred HHHHHcCCeEEEEEcccccc
Q 001897 252 HERLLRESNFLLILDDVWET 271 (998)
Q Consensus 252 ~~~l~~~~r~LlVlDdv~~~ 271 (998)
+.....-+|-|+|+|+++..
T Consensus 171 ~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 171 RGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHhcCCceEEechhhhc
Confidence 55555557999999999876
No 458
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.40 E-value=0.099 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.++.|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999764
No 459
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.39 E-value=0.031 Score=54.09 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=33.9
Q ss_pred CCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccc
Q 001897 811 LPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCD 878 (998)
Q Consensus 811 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~ 878 (998)
+++++.|.+.+|..+.+|+-. ..+.-+++|+.|+|++|+++++-... ++..+++|+.|.|.+.+
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~--~l~~~~~~L~~L~lsgC~rIT~~GL~--~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLE--RLGGLAPSLQDLDLSGCPRITDGGLA--CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cchhhhheeccccchhhHHHH--HhcccccchheeeccCCCeechhHHH--HHHHhhhhHHHHhcCch
Confidence 455566666666555555421 11113566666666666666654332 34555666666655544
No 460
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.37 E-value=0.9 Score=47.46 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=50.7
Q ss_pred CceEEEEEeCCCChHHHHH-HHHHHHhhhccccCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhcCCc------chhhhH-
Q 001897 175 EIRRIGIWGLGGIGKTTLV-KNLNNILKRDSSAHRSGMV-IWATVSKEL-NLRWVQAQIAERLNLDV------KMEESM- 244 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~~- 244 (998)
+-+.++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. .+.++.+.+.+.-.... ..++..
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-------~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~ 140 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-------GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAP 140 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-------CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchh
Confidence 3467899999999999996 5555431 12333 666665543 45566666654321110 001111
Q ss_pred -----HHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 245 -----QRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 245 -----~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
...+..+.+++. .++.+|+|+||+...
T Consensus 141 ~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 141 LQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 112233444443 357999999998654
No 461
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.34 E-value=0.88 Score=44.02 Aligned_cols=118 Identities=17% Similarity=0.095 Sum_probs=60.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEE--EEEeCCCCCHHHHHHHHH---HHhcCCc-----chhh---
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVI--WATVSKELNLRWVQAQIA---ERLNLDV-----KMEE--- 242 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~--wv~~s~~~~~~~~~~~i~---~~l~~~~-----~~~~--- 242 (998)
...|-|++..|.||||.|..+.-+... ..+.+.+ |+.-.........++... .+.+... +...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~----~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALG----HGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHH----CCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHH
Confidence 367888999999999999988776432 2222211 222222233333433320 0001100 0011
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEEccccccc-----ccccccCCCCCCCCCcEEEEecCCh
Q 001897 243 SMQRLGIRLHERLLRESNFLLILDDVWETI-----DLDSLGVPQPEDHGGSKIILTSRSL 297 (998)
Q Consensus 243 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~iivTtR~~ 297 (998)
..........+.+..++-=|+|||.+-... +.+++...+.....+.-||+|-|..
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 112222333445555545699999985432 2334433343444567899999974
No 462
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.32 E-value=1 Score=50.89 Aligned_cols=97 Identities=16% Similarity=0.207 Sum_probs=54.1
Q ss_pred CceEEEEEeCCCChHHHHH-HHHHHHhhhc--cccCCCCeEEEEEeCCCCCHHHHHHHHHHHhc-CCcc------hhhh-
Q 001897 175 EIRRIGIWGLGGIGKTTLV-KNLNNILKRD--SSAHRSGMVIWATVSKELNLRWVQAQIAERLN-LDVK------MEES- 243 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~--~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~------~~~~- 243 (998)
+-..++|.|..|+|||+|| -.+.+..... ...+.-+.++++-+.+..+...-..+.+++-+ .+.. .++.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 5556643110 01123456788888776543322333344333 1110 0110
Q ss_pred -----HHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 244 -----MQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 244 -----~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
..-.+..+.+++. .++.+|+|+||+...
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1112333455553 457999999998654
No 463
>PF13245 AAA_19: Part of AAA domain
Probab=92.29 E-value=0.31 Score=40.11 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=18.0
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
+-+++.|.|++|.|||+++......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467888999999999555444433
No 464
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.27 E-value=0.37 Score=55.07 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=48.4
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcc-----hhhhHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVK-----MEESMQRLGIR 250 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~ 250 (998)
-.++.|.|.+|+|||||+.+++..... .-..++|++..+. ..++... ++.++.+.. ...+.+ .
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~-----~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~----~ 147 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA-----AGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLE----A 147 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHH----H
Confidence 469999999999999999999876542 1235778876543 3333222 455554221 011222 2
Q ss_pred HHHHHHcCCeEEEEEccccc
Q 001897 251 LHERLLRESNFLLILDDVWE 270 (998)
Q Consensus 251 l~~~l~~~~r~LlVlDdv~~ 270 (998)
+.+.+...+.-++|+|.+..
T Consensus 148 i~~~i~~~~~~lVVIDSIq~ 167 (446)
T PRK11823 148 ILATIEEEKPDLVVIDSIQT 167 (446)
T ss_pred HHHHHHhhCCCEEEEechhh
Confidence 33333333355788888753
No 465
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.26 E-value=0.13 Score=48.96 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=24.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
.+|++|+|+.|+|||||+..+...++.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~ 28 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKA 28 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHh
Confidence 479999999999999999999888754
No 466
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.24 E-value=0.29 Score=52.68 Aligned_cols=49 Identities=24% Similarity=0.229 Sum_probs=35.7
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQ 229 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 229 (998)
.+++.+.|.|||||||+|.+..-.... . ...++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~----~-g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE----S-GKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH----c-CCcEEEEEeCCCCchHhhhcc
Confidence 478999999999999999886655442 2 244777777766676666554
No 467
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.24 E-value=0.61 Score=52.51 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=51.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcc------hhh------
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVK------MEE------ 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~------ 242 (998)
+-..++|.|..|+|||||++.++..... -..+++..-.+...+.++.+.+...-+.... .+.
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~------d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~ 235 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC------DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERA 235 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC------CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHH
Confidence 4578999999999999999998764221 1123333333344455555555443221110 000
Q ss_pred hHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 243 SMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 243 ~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
.....+..+.+++. .++.+|+++||+...
T Consensus 236 ~a~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 236 KAAYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11222334455553 457999999998654
No 468
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.23 E-value=10 Score=41.07 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=33.3
Q ss_pred EEEccCCChHHHHHHHHHhhCCCC--CCCCchHHHHHHHHHccCChHHH
Q 001897 308 EVRVDLLNDDEAWQLFSQNAGVAA--SKDPIKPFAQAIARECKGLPLAI 354 (998)
Q Consensus 308 ~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPlai 354 (998)
++++.+++.+|+..++.-++...- .....+...+++..-.+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988873322 11333455667777778988643
No 469
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.22 E-value=0.62 Score=52.21 Aligned_cols=90 Identities=18% Similarity=0.266 Sum_probs=50.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCc-------chhh----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE-LNLRWVQAQIAERLNLDV-------KMEE---- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~---- 242 (998)
.-..++|+|..|+|||||++.+..... .+..+.+.+.+. ..+.++.......-.... ....
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~-------~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r 208 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE-------ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMR 208 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC-------CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHH
Confidence 446799999999999999988876421 234444555443 234445444433211110 0000
Q ss_pred -hHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 243 -SMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 243 -~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
.....+..+.+++. .++++|+++||+...
T Consensus 209 ~~a~~~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 209 LRAAFYATAIAEYFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEeChHHH
Confidence 11222334455553 457999999998654
No 470
>PRK05439 pantothenate kinase; Provisional
Probab=92.19 E-value=0.18 Score=53.94 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=23.6
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...-+|+|.|.+|+||||+|+.+...+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999987754
No 471
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.18 E-value=0.98 Score=44.88 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.3
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
....+|.|.|.+|.||||+|+.+...+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4457999999999999999999987653
No 472
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.15 E-value=0.79 Score=51.95 Aligned_cols=93 Identities=20% Similarity=0.382 Sum_probs=57.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCc-------------ch
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDV-------------KM 240 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------------~~ 240 (998)
.-..++|.|..|+|||||+..+...... .+-+.++++-+.+.. .+.++...+...-..+. ..
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~----~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~ats 235 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAK----AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQM 235 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHH----hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECC
Confidence 4467899999999999999988765321 112678888776654 45666666655111000 00
Q ss_pred hh------hHHHHHHHHHHHHHc-C-CeEEEEEcccccc
Q 001897 241 EE------SMQRLGIRLHERLLR-E-SNFLLILDDVWET 271 (998)
Q Consensus 241 ~~------~~~~~~~~l~~~l~~-~-~r~LlVlDdv~~~ 271 (998)
+. .....+..+.+++.. + +++||++||+...
T Consensus 236 d~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 236 NEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 00 112334456677754 3 4899999998654
No 473
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=92.15 E-value=0.68 Score=52.12 Aligned_cols=90 Identities=16% Similarity=0.285 Sum_probs=51.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCcc-------hhh----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE-LNLRWVQAQIAERLNLDVK-------MEE---- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-------~~~---- 242 (998)
.-..++|+|..|+|||||++.+.... ..+.++...+... ....++...+...-+.... .+.
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-------~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r 239 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-------EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMR 239 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-------CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHH
Confidence 34679999999999999999887531 1234444444333 2455555555443222110 000
Q ss_pred -hHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 243 -SMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 243 -~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
.....+..+.+++. .++++|+++||+...
T Consensus 240 ~~a~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 240 LRAAMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 11122333455553 457999999998654
No 474
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.13 E-value=0.19 Score=49.99 Aligned_cols=38 Identities=34% Similarity=0.385 Sum_probs=28.7
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeC
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVS 218 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s 218 (998)
.++|.|+|+.|+|||||++.+..... ..|...++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~-----~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP-----DKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST-----TTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc-----cccccceeeccc
Confidence 47899999999999999999988642 346555555443
No 475
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.12 E-value=0.13 Score=51.92 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=39.0
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEE-------EEEeCCCCCHHHH--HHHHHHHhcCCcc
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVI-------WATVSKELNLRWV--QAQIAERLNLDVK 239 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~-------wv~~s~~~~~~~~--~~~i~~~l~~~~~ 239 (998)
++...|.++||+|.||||..+.++..+..+ ..-..++ -+...-+.++++. .++.+++.++..+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~---~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAK---KTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhc---cCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 345688999999999999999998876432 1112222 1222334456654 3467777665443
No 476
>PRK13948 shikimate kinase; Provisional
Probab=92.10 E-value=0.14 Score=50.39 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+.|.++|+.|+||||+++.+.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998864
No 477
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.10 E-value=0.3 Score=48.35 Aligned_cols=117 Identities=21% Similarity=0.144 Sum_probs=62.6
Q ss_pred HHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCC-eE-EEEEeCCCCCHHHHHHHHHHHhcCCc------
Q 001897 167 LMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSG-MV-IWATVSKELNLRWVQAQIAERLNLDV------ 238 (998)
Q Consensus 167 l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~-~~-~wv~~s~~~~~~~~~~~i~~~l~~~~------ 238 (998)
++..+-.....-..|.|++|+|||||.+.++.-.... . +.|- .. .-|+-+. +|+..+....
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g-~-~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~ 196 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDG-I-NQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGR 196 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhcc-c-cccCCceEEEEeccc---------hhhccccCCchhhhhh
Confidence 4444444555567899999999999999998876543 1 2332 22 2222211 1221111100
Q ss_pred chh-hhHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCCh
Q 001897 239 KME-ESMQRLGIRLHERLLRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSL 297 (998)
Q Consensus 239 ~~~-~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 297 (998)
..+ .+.....+-+.....+...=.+|.|.+-...+..++...+ ..|.+++.|..-.
T Consensus 197 R~dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 197 RMDVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred hhhhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 000 0111112223344445557789999998876655444333 4588888777543
No 478
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.81 Score=53.04 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=36.8
Q ss_pred cccccchHHHHHHHHHhhcCCC---------ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 154 IEHQTTASKTLGKLMKLLDCDE---------IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~---------~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+.|.+...+++.++++.|.+.. ++-|..+|++|.|||.||+++....
T Consensus 152 VAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 152 VAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 3344455678888888887642 4578899999999999999998864
No 479
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.03 E-value=0.39 Score=48.43 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=22.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.+|+|.|+.|+||||+++.+.+.+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 480
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.02 E-value=0.97 Score=47.58 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=47.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHH--HHHHHHHHHhcCCcchhhhHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLR--WVQAQIAERLNLDVKMEESMQRLGIRLH 252 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 252 (998)
...+++++|.+|+||||++..+...+... -..+.+++.. .+.+. .-.+...+.++.+.....+...+...+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~-----~~~v~~i~~D-~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l- 146 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-----KKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL- 146 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc-----CCeEEEEecC-CCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHH-
Confidence 44799999999999999999887765321 1235555543 22222 222334444444432222333333322
Q ss_pred HHHHc-CCeEEEEEcccc
Q 001897 253 ERLLR-ESNFLLILDDVW 269 (998)
Q Consensus 253 ~~l~~-~~r~LlVlDdv~ 269 (998)
+.+.. .+.=++++|..-
T Consensus 147 ~~l~~~~~~D~ViIDt~G 164 (270)
T PRK06731 147 TYFKEEARVDYILIDTAG 164 (270)
T ss_pred HHHHhcCCCCEEEEECCC
Confidence 33332 235678888763
No 481
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.01 E-value=0.12 Score=51.83 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+++|+|..|.|||||++.+.--
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999653
No 482
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.00 E-value=0.28 Score=52.93 Aligned_cols=47 Identities=28% Similarity=0.292 Sum_probs=31.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQA 228 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 228 (998)
+++.+.|-||+||||+|.+.+-..... + ..+.-++.....++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~---G--~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR---G--KRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT---T--S-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC---C--CCeeEeecCCCccHHHHhC
Confidence 688999999999999998887665432 1 2355565555444444433
No 483
>PRK13946 shikimate kinase; Provisional
Probab=91.98 E-value=0.13 Score=51.24 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+.|.++|+.|+||||+|+.+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999875
No 484
>PLN02200 adenylate kinase family protein
Probab=91.95 E-value=0.15 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
...+|.|.|++|+||||+|+.+...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 485
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.92 E-value=0.14 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
..++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999775
No 486
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.85 E-value=0.14 Score=48.97 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+-|.++||.|+||||+.+.+++.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC
Confidence 4578999999999999999998754
No 487
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=91.84 E-value=0.75 Score=52.25 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=57.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCcc-------hhh----
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE-LNLRWVQAQIAERLNLDVK-------MEE---- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-------~~~---- 242 (998)
.-..++|.|..|+|||||+..+.+....+.....+ .++++-+.+. ..+.++.+.+...-..... ...
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R 220 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIER 220 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHH
Confidence 34678999999999999999988763211000111 5677777654 3466666666553221110 000
Q ss_pred -hHHHHHHHHHHHHH--cCCeEEEEEcccccc
Q 001897 243 -SMQRLGIRLHERLL--RESNFLLILDDVWET 271 (998)
Q Consensus 243 -~~~~~~~~l~~~l~--~~~r~LlVlDdv~~~ 271 (998)
-..-.+..+.+++. .++++|+++||+...
T Consensus 221 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 221 ILTPRMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 12223445677776 467999999998654
No 488
>PRK15453 phosphoribulokinase; Provisional
Probab=91.83 E-value=0.17 Score=52.68 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=24.2
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
....+|+|.|.+|+||||+|+.+.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999987654
No 489
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.81 E-value=0.14 Score=49.85 Aligned_cols=21 Identities=43% Similarity=0.404 Sum_probs=17.4
Q ss_pred EEEEeCCCChHHHHHHHHHHH
Q 001897 179 IGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 179 i~I~G~gG~GKTtLa~~v~~~ 199 (998)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999864
No 490
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=91.75 E-value=0.33 Score=54.14 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 162 KTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 162 ~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+.+++.+...+...+.|.|.||.|||++.+++.+.++
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 3455666666666778899999999999999999988764
No 491
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.71 E-value=1.1 Score=46.08 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=33.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQ 229 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 229 (998)
.-.++.|.|.+|+|||++|.+++..... .=..+++++... ++.++.+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~-----~g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK-----NGEKAMYISLEE--REERILGY 62 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEECCC--CHHHHHHH
Confidence 3478999999999999999988664321 124577888766 34444443
No 492
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=91.68 E-value=0.13 Score=47.07 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=27.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL 221 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~ 221 (998)
.+-|.|.|.+|+||||+|.+++.... .-|+++|+-.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~----------~~~i~isd~v 42 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG----------LEYIEISDLV 42 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC----------CceEehhhHH
Confidence 35688999999999999999986421 2467776543
No 493
>PRK04182 cytidylate kinase; Provisional
Probab=91.66 E-value=0.15 Score=50.59 Aligned_cols=23 Identities=43% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+|.|.|+.|+||||+|+.+.+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998763
No 494
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.65 E-value=0.11 Score=28.78 Aligned_cols=16 Identities=56% Similarity=0.889 Sum_probs=7.3
Q ss_pred CccEEEcCCCCCCCCC
Q 001897 562 ALRVLNLSGTRIHSLP 577 (998)
Q Consensus 562 ~Lr~L~l~~~~~~~lp 577 (998)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666666666665554
No 495
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.64 E-value=0.55 Score=53.73 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=29.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK 219 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~ 219 (998)
.-.++.|.|.+|+|||||+.++....... -..++|++..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~-----g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN-----QMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc-----CCcEEEEECcC
Confidence 34689999999999999999997765321 12477887654
No 496
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=91.64 E-value=0.17 Score=53.47 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=23.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
++|+|+|.+|+|||||+..+...++.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~ 27 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSG 27 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999988764
No 497
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=91.59 E-value=0.85 Score=51.60 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=49.4
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC-------cchh-----
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLD-------VKME----- 241 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~----- 241 (998)
..-.+++|+|..|+|||||++.+...... -..++++.--...++.++....+..-+.. ....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~------~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r 229 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSA------DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMR 229 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCC------CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHH
Confidence 45578999999999999999988764321 11233333223334444433321111000 0000
Q ss_pred hhHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 242 ESMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 242 ~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
......+..+.+++. .++++|+++||+...
T Consensus 230 ~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 230 IKGAYTATAIAEYFRDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEeChHHH
Confidence 011223334455553 467999999998654
No 498
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.59 E-value=0.17 Score=51.30 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
...+.|.|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45688999999999999999998653
No 499
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.55 E-value=0.19 Score=48.30 Aligned_cols=25 Identities=44% Similarity=0.636 Sum_probs=22.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
++++|+|..|+|||||+..+...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999988764
No 500
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=91.54 E-value=1.1 Score=50.68 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=51.7
Q ss_pred CceEEEEEeCCCChHHHHHHH-HHHHhhhccccCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhcCCcc-------hhhh-
Q 001897 175 EIRRIGIWGLGGIGKTTLVKN-LNNILKRDSSAHRSGMV-IWATVSKEL-NLRWVQAQIAERLNLDVK-------MEES- 243 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~-v~~~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~~-------~~~~- 243 (998)
+-..++|.|..|+||||||.. +.+. ..-+.+ +++-+.+.. .+.++.+.+...-..... .+..
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q-------~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~ 212 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQ-------KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPAT 212 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhc-------ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHH
Confidence 446789999999999999654 4442 123434 777776543 456666665543211110 0001
Q ss_pred ----HHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 244 ----MQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 244 ----~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
..-.+..+.+++. +++++|+|+||+...
T Consensus 213 ~r~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 213 LQYLAPYTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHHHHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 1112233445554 457999999998654
Done!