Query 001897
Match_columns 998
No_of_seqs 644 out of 5488
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 03:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.2E-44 1.1E-48 422.2 22.1 310 159-487 132-469 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.3E-37 7.8E-42 364.1 17.1 283 158-482 131-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-35 5.3E-40 388.2 20.2 310 154-487 123-450 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.6E-31 9E-36 317.9 23.7 304 155-485 124-448 (591)
5 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-29 1.5E-33 300.7 31.7 439 495-959 15-557 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.9E-28 6.4E-33 295.1 29.4 450 495-960 16-560 (606)
7 3rgz_A Protein brassinosteroid 100.0 5.3E-29 1.8E-33 306.6 21.9 153 512-667 199-355 (768)
8 2z63_A TOLL-like receptor 4, v 100.0 3.4E-28 1.1E-32 290.8 27.8 438 495-959 11-530 (570)
9 3t6q_A CD180 antigen; protein- 100.0 5.1E-28 1.8E-32 291.2 27.5 411 495-935 37-559 (606)
10 3rgz_A Protein brassinosteroid 100.0 3E-28 1E-32 299.8 24.9 342 512-878 177-549 (768)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-27 6.2E-32 296.0 31.9 171 495-668 8-187 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-27 3.8E-32 284.7 24.5 433 498-959 12-509 (549)
13 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-27 3.9E-32 288.2 24.2 422 515-957 13-531 (606)
14 4ecn_A Leucine-rich repeat pro 100.0 6.8E-28 2.3E-32 293.6 21.2 347 552-934 440-838 (876)
15 1ziw_A TOLL-like receptor 3; i 100.0 9.9E-27 3.4E-31 283.9 31.1 441 495-958 8-515 (680)
16 4eco_A Uncharacterized protein 99.9 1.1E-27 3.8E-32 287.8 19.6 181 552-747 198-416 (636)
17 1ziw_A TOLL-like receptor 3; i 99.9 4.1E-26 1.4E-30 278.5 31.0 373 493-877 27-514 (680)
18 2z7x_B TOLL-like receptor 1, v 99.9 4.1E-26 1.4E-30 269.1 28.3 407 513-959 21-480 (520)
19 2z63_A TOLL-like receptor 4, v 99.9 3.6E-26 1.2E-30 273.1 25.3 399 516-957 10-504 (570)
20 2z81_A CD282 antigen, TOLL-lik 99.9 7E-26 2.4E-30 269.2 27.4 408 493-935 28-509 (549)
21 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-25 4E-30 279.7 27.8 406 516-957 7-536 (844)
22 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-25 6.6E-30 263.3 24.7 396 516-957 3-454 (520)
23 4ecn_A Leucine-rich repeat pro 99.9 4.9E-26 1.7E-30 277.3 18.4 350 523-913 435-841 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2E-24 6.8E-29 256.7 28.8 406 516-959 34-509 (562)
25 1o6v_A Internalin A; bacterial 99.9 3E-24 1E-28 248.8 27.1 349 511-941 44-392 (466)
26 1o6v_A Internalin A; bacterial 99.9 5.5E-24 1.9E-28 246.6 28.3 346 535-962 45-390 (466)
27 4eco_A Uncharacterized protein 99.9 4.8E-25 1.7E-29 264.8 18.6 368 511-937 204-633 (636)
28 4g8a_A TOLL-like receptor 4; l 99.9 2.2E-23 7.6E-28 252.6 33.3 438 495-959 35-579 (635)
29 3v47_A TOLL-like receptor 5B a 99.9 8.4E-24 2.9E-28 244.9 27.6 377 518-940 15-412 (455)
30 3v47_A TOLL-like receptor 5B a 99.9 1.7E-24 5.9E-29 250.7 19.3 383 496-914 15-410 (455)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-23 6.2E-28 248.5 27.6 379 535-957 30-483 (562)
32 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-22 7.2E-27 231.1 29.1 167 510-703 39-205 (457)
33 4fmz_A Internalin; leucine ric 99.9 2.6E-22 8.9E-27 223.3 25.6 305 509-910 40-344 (347)
34 3o6n_A APL1; leucine-rich repe 99.9 4.8E-23 1.6E-27 233.1 18.9 305 535-911 44-351 (390)
35 1jl5_A Outer protein YOPM; leu 99.9 1E-22 3.4E-27 233.5 21.4 366 513-957 11-406 (454)
36 3oja_B Anopheles plasmodium-re 99.9 6.1E-23 2.1E-27 245.2 18.6 304 535-910 50-356 (597)
37 4fmz_A Internalin; leucine ric 99.9 7.2E-22 2.5E-26 219.7 25.6 299 493-851 46-344 (347)
38 2id5_A Lingo-1, leucine rich r 99.9 5E-22 1.7E-26 231.3 24.9 265 537-822 33-306 (477)
39 3o6n_A APL1; leucine-rich repe 99.9 1.8E-22 6.2E-27 228.3 20.3 305 559-934 43-350 (390)
40 2id5_A Lingo-1, leucine rich r 99.9 5.1E-22 1.8E-26 231.2 22.0 309 495-825 15-333 (477)
41 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-21 6.3E-26 235.7 26.5 413 517-956 35-551 (635)
42 1jl5_A Outer protein YOPM; leu 99.9 8.5E-21 2.9E-25 217.5 26.1 295 515-877 73-367 (454)
43 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-21 6.4E-26 223.2 20.0 182 493-703 44-226 (457)
44 3oja_B Anopheles plasmodium-re 99.9 2E-21 7E-26 232.0 19.6 303 512-878 50-356 (597)
45 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-19 3.9E-24 200.3 20.6 291 537-878 34-331 (332)
46 2z80_A TOLL-like receptor 2, v 99.8 9E-20 3.1E-24 203.0 19.3 276 518-826 36-315 (353)
47 1xku_A Decorin; proteoglycan, 99.8 2.3E-19 7.8E-24 197.8 22.2 150 537-701 32-183 (330)
48 4fcg_A Uncharacterized protein 99.8 6.8E-20 2.3E-24 201.0 17.4 152 513-668 81-242 (328)
49 4fcg_A Uncharacterized protein 99.8 1.4E-19 4.6E-24 198.6 18.5 90 559-649 79-169 (328)
50 1ogq_A PGIP-2, polygalacturona 99.8 5.3E-20 1.8E-24 200.6 14.8 249 513-827 50-306 (313)
51 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-19 4.8E-24 199.6 16.1 289 561-910 33-331 (332)
52 1xku_A Decorin; proteoglycan, 99.8 1.6E-18 5.4E-23 191.0 23.9 287 514-850 32-329 (330)
53 1ogq_A PGIP-2, polygalacturona 99.8 9.8E-20 3.4E-24 198.5 11.5 250 536-855 50-306 (313)
54 3ogk_B Coronatine-insensitive 99.8 8.5E-20 2.9E-24 218.9 12.1 376 534-937 110-526 (592)
55 3zyj_A Leucine-rich repeat-con 99.8 1.2E-18 4.1E-23 200.1 18.4 243 515-823 45-290 (440)
56 3ogk_B Coronatine-insensitive 99.8 1.6E-20 5.5E-25 225.2 2.8 370 557-957 108-523 (592)
57 3zyi_A Leucine-rich repeat-con 99.8 1.3E-18 4.4E-23 200.5 18.1 243 515-823 56-301 (452)
58 2z80_A TOLL-like receptor 2, v 99.8 2E-18 6.9E-23 192.0 17.7 179 534-746 29-211 (353)
59 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-20 5.2E-25 217.9 0.3 371 537-934 4-409 (461)
60 2z66_A Variable lymphocyte rec 99.8 1.9E-18 6.6E-23 188.1 15.8 172 516-701 10-187 (306)
61 1ozn_A Reticulon 4 receptor; N 99.8 2.9E-18 9.9E-23 184.6 14.4 213 495-720 15-232 (285)
62 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-17 6.1E-22 195.6 21.7 255 514-851 41-295 (622)
63 2p1m_B Transport inhibitor res 99.8 2.4E-19 8.1E-24 215.2 4.6 377 534-935 103-518 (594)
64 1z7x_W Ribonuclease inhibitor; 99.7 4.5E-20 1.5E-24 214.0 -3.9 177 731-911 254-439 (461)
65 1ozn_A Reticulon 4 receptor; N 99.7 1.2E-17 4.1E-22 179.7 14.9 194 516-723 14-211 (285)
66 3g06_A SSPH2 (leucine-rich rep 99.7 4.9E-17 1.7E-21 191.9 21.4 258 536-880 40-297 (622)
67 3zyi_A Leucine-rich repeat-con 99.7 5.1E-17 1.7E-21 187.2 18.7 236 495-745 58-302 (452)
68 3zyj_A Leucine-rich repeat-con 99.7 4.8E-17 1.6E-21 186.7 18.4 236 495-745 47-291 (440)
69 2p1m_B Transport inhibitor res 99.7 9.8E-20 3.3E-24 218.5 -4.3 371 556-955 100-514 (594)
70 3o53_A Protein LRIM1, AGAP0063 99.7 8.2E-19 2.8E-23 191.8 1.2 103 556-667 29-132 (317)
71 2z66_A Variable lymphocyte rec 99.7 4.8E-17 1.6E-21 177.1 14.7 237 496-746 12-261 (306)
72 2o6q_A Variable lymphocyte rec 99.7 3.9E-16 1.3E-20 166.2 18.9 192 514-719 17-211 (270)
73 2o6q_A Variable lymphocyte rec 99.7 1.1E-15 3.6E-20 162.9 19.8 196 495-703 20-219 (270)
74 3o53_A Protein LRIM1, AGAP0063 99.7 1E-17 3.5E-22 183.0 4.0 166 517-701 14-181 (317)
75 2z62_A TOLL-like receptor 4, v 99.7 5.5E-16 1.9E-20 165.8 16.7 195 498-706 14-217 (276)
76 2z62_A TOLL-like receptor 4, v 99.7 1.4E-15 4.7E-20 162.7 18.4 144 519-667 13-161 (276)
77 3oja_A Leucine-rich immune mol 99.6 3.1E-16 1E-20 181.5 12.5 125 535-668 33-157 (487)
78 1p9a_G Platelet glycoprotein I 99.6 1.9E-15 6.7E-20 162.2 17.2 176 512-703 9-186 (290)
79 1h6u_A Internalin H; cell adhe 99.6 2.2E-15 7.5E-20 163.5 17.4 173 510-704 38-210 (308)
80 1wwl_A Monocyte differentiatio 99.6 1.8E-17 6.3E-22 180.6 0.3 241 536-824 43-308 (312)
81 3rfs_A Internalin B, repeat mo 99.6 1.3E-15 4.3E-20 162.4 12.2 177 509-700 37-216 (272)
82 3m19_A Variable lymphocyte rec 99.6 8.2E-15 2.8E-19 154.1 17.6 176 514-703 15-193 (251)
83 3rfs_A Internalin B, repeat mo 99.6 4E-15 1.4E-19 158.5 14.7 173 493-668 43-218 (272)
84 2xwt_C Thyrotropin receptor; s 99.6 3.1E-15 1.1E-19 156.1 13.0 187 503-704 23-220 (239)
85 1p9a_G Platelet glycoprotein I 99.6 8.9E-15 3E-19 157.0 16.7 192 495-702 14-208 (290)
86 1h6u_A Internalin H; cell adhe 99.6 2.1E-14 7.3E-19 155.7 19.4 189 493-703 43-231 (308)
87 1wwl_A Monocyte differentiatio 99.6 8.1E-16 2.8E-20 167.5 8.1 178 515-702 65-266 (312)
88 3oja_A Leucine-rich immune mol 99.6 2.4E-15 8.2E-20 174.0 11.7 213 512-746 33-250 (487)
89 1h6t_A Internalin B; cell adhe 99.6 1.6E-14 5.4E-19 155.2 17.3 174 509-704 42-215 (291)
90 3m19_A Variable lymphocyte rec 99.6 3E-14 1E-18 149.7 18.4 172 494-668 17-192 (251)
91 2xwt_C Thyrotropin receptor; s 99.6 1.1E-14 3.7E-19 151.9 11.9 205 525-766 23-237 (239)
92 3e6j_A Variable lymphocyte rec 99.5 7.9E-14 2.7E-18 144.0 16.3 150 515-668 21-172 (229)
93 4ay9_X Follicle-stimulating ho 99.5 6.1E-14 2.1E-18 155.3 16.3 113 548-664 20-137 (350)
94 2o6s_A Variable lymphocyte rec 99.5 4E-14 1.4E-18 144.1 13.5 170 516-706 10-182 (208)
95 1m9s_A Internalin B; cell inva 99.5 4E-14 1.4E-18 166.9 14.7 174 509-704 39-212 (605)
96 2v9t_B SLIT homolog 2 protein 99.5 1.1E-13 3.9E-18 141.8 14.6 149 516-668 14-165 (220)
97 2ast_B S-phase kinase-associat 99.5 3.2E-15 1.1E-19 165.0 3.1 125 538-667 49-181 (336)
98 4ezg_A Putative uncharacterize 99.5 9.6E-14 3.3E-18 139.8 12.9 149 511-667 42-193 (197)
99 2ast_B S-phase kinase-associat 99.5 1.5E-14 5.1E-19 159.6 6.1 176 513-699 70-257 (336)
100 2v70_A SLIT-2, SLIT homolog 2 99.5 2.3E-13 7.7E-18 139.5 14.0 149 516-668 14-166 (220)
101 2ca6_A RAN GTPase-activating p 99.5 7.8E-15 2.7E-19 165.2 2.7 72 754-826 243-317 (386)
102 3goz_A Leucine-rich repeat-con 99.5 3.7E-14 1.3E-18 157.9 7.6 112 555-667 16-150 (362)
103 2qen_A Walker-type ATPase; unk 99.5 3.5E-12 1.2E-16 141.5 23.2 285 156-481 13-347 (350)
104 2ca6_A RAN GTPase-activating p 99.5 1.1E-14 3.6E-19 164.1 2.5 266 557-878 28-341 (386)
105 1h6t_A Internalin B; cell adhe 99.5 6.2E-13 2.1E-17 142.8 16.2 165 494-668 49-213 (291)
106 2o6s_A Variable lymphocyte rec 99.5 4.2E-13 1.4E-17 136.5 14.1 167 496-672 12-182 (208)
107 2xot_A Amphoterin-induced prot 99.5 2E-13 6.9E-18 151.7 12.4 149 516-668 21-176 (361)
108 4ezg_A Putative uncharacterize 99.5 3.2E-13 1.1E-17 136.0 12.7 151 534-702 42-194 (197)
109 4glp_A Monocyte differentiatio 99.5 3.2E-13 1.1E-17 146.9 13.5 178 512-703 90-286 (310)
110 1w5s_A Origin recognition comp 99.4 1.4E-12 4.6E-17 148.4 19.2 303 157-478 24-387 (412)
111 4ay9_X Follicle-stimulating ho 99.4 3.1E-13 1.1E-17 149.6 13.2 204 495-710 13-223 (350)
112 4glp_A Monocyte differentiatio 99.4 1.6E-13 5.4E-18 149.3 10.6 181 514-703 65-265 (310)
113 1xeu_A Internalin C; cellular 99.4 1.3E-13 4.3E-18 145.7 8.4 166 515-703 21-186 (263)
114 1xeu_A Internalin C; cellular 99.4 1E-12 3.5E-17 138.7 14.6 155 503-668 31-185 (263)
115 3cvr_A Invasion plasmid antige 99.4 2.2E-12 7.5E-17 150.2 17.6 189 514-752 60-249 (571)
116 2fna_A Conserved hypothetical 99.4 9.3E-12 3.2E-16 138.4 21.8 281 156-481 14-355 (357)
117 2xot_A Amphoterin-induced prot 99.4 6.2E-13 2.1E-17 147.8 11.8 169 496-667 23-201 (361)
118 3goz_A Leucine-rich repeat-con 99.4 2E-13 6.7E-18 152.1 6.6 132 535-668 21-180 (362)
119 1m9s_A Internalin B; cell inva 99.4 2.4E-12 8E-17 151.8 15.7 164 495-668 47-210 (605)
120 2v9t_B SLIT homolog 2 protein 99.4 3.8E-12 1.3E-16 130.4 14.8 146 495-642 15-164 (220)
121 2v70_A SLIT-2, SLIT homolog 2 99.4 4.7E-12 1.6E-16 129.7 14.4 146 495-642 15-165 (220)
122 3cvr_A Invasion plasmid antige 99.4 3.1E-12 1.1E-16 148.9 14.5 185 494-712 62-253 (571)
123 3e6j_A Variable lymphocyte rec 99.3 7.8E-12 2.7E-16 129.0 15.3 144 496-642 24-171 (229)
124 2ell_A Acidic leucine-rich nuc 99.3 4E-12 1.4E-16 124.3 11.7 131 513-647 24-163 (168)
125 2wfh_A SLIT homolog 2 protein 99.3 1.4E-11 4.7E-16 123.2 13.9 124 540-668 14-139 (193)
126 2ell_A Acidic leucine-rich nuc 99.3 4.3E-12 1.5E-16 124.1 9.6 105 561-667 24-132 (168)
127 2je0_A Acidic leucine-rich nuc 99.3 5E-12 1.7E-16 120.8 8.2 13 514-526 18-30 (149)
128 4b8c_D Glucose-repressible alc 99.3 5.3E-12 1.8E-16 152.9 10.2 154 513-670 173-331 (727)
129 1w8a_A SLIT protein; signaling 99.3 1.8E-11 6.3E-16 122.3 12.5 125 539-668 11-139 (192)
130 2je0_A Acidic leucine-rich nuc 99.3 1.3E-11 4.6E-16 117.8 10.1 126 535-663 16-148 (149)
131 1dce_A Protein (RAB geranylger 99.3 6.8E-14 2.3E-18 164.0 -7.6 179 512-703 348-547 (567)
132 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5E-16 121.2 8.4 128 535-666 18-151 (176)
133 4b8c_D Glucose-repressible alc 99.2 3.6E-12 1.2E-16 154.4 4.6 146 519-668 207-354 (727)
134 1w8a_A SLIT protein; signaling 99.2 6.1E-11 2.1E-15 118.5 12.1 125 516-643 11-139 (192)
135 2wfh_A SLIT homolog 2 protein 99.2 9.8E-11 3.3E-15 116.9 13.4 123 516-642 13-138 (193)
136 3qfl_A MLA10; coiled-coil, (CC 99.2 1.8E-11 6.2E-16 108.9 6.8 76 16-98 7-83 (115)
137 2o6r_A Variable lymphocyte rec 99.2 1.5E-10 5E-15 114.1 13.5 107 561-668 28-137 (177)
138 2o6r_A Variable lymphocyte rec 99.2 2.4E-10 8.2E-15 112.6 14.0 126 515-643 9-137 (177)
139 1a9n_A U2A', U2A'; complex (nu 99.2 5.3E-11 1.8E-15 117.2 9.1 126 512-641 18-151 (176)
140 1dce_A Protein (RAB geranylger 99.1 1.8E-10 6.1E-15 134.9 12.9 119 538-661 443-566 (567)
141 2v1u_A Cell division control p 99.1 1.9E-09 6.6E-14 121.1 20.4 290 156-465 20-350 (387)
142 2qby_A CDC6 homolog 1, cell di 99.1 1.7E-09 5.7E-14 121.5 18.2 245 156-415 21-297 (386)
143 2qby_B CDC6 homolog 3, cell di 99.1 5.6E-09 1.9E-13 117.1 21.0 242 157-415 22-295 (384)
144 2r9u_A Variable lymphocyte rec 99.0 7.7E-10 2.6E-14 108.3 11.3 101 564-667 15-117 (174)
145 3g39_A Variable lymphocyte rec 99.0 9.4E-10 3.2E-14 107.3 11.3 102 563-667 11-114 (170)
146 1ds9_A Outer arm dynein; leuci 99.0 4.5E-12 1.5E-16 127.6 -6.5 142 549-695 37-180 (198)
147 1ds9_A Outer arm dynein; leuci 99.0 7.2E-12 2.5E-16 126.1 -6.2 143 515-661 25-180 (198)
148 1fnn_A CDC6P, cell division co 99.0 4.6E-08 1.6E-12 109.8 23.2 286 157-465 19-350 (389)
149 2r9u_A Variable lymphocyte rec 98.9 2.8E-09 9.6E-14 104.2 10.8 99 539-641 15-116 (174)
150 1njg_A DNA polymerase III subu 98.9 1.2E-08 4.2E-13 106.3 16.3 196 154-361 22-231 (250)
151 2chg_A Replication factor C sm 98.9 1.6E-08 5.6E-13 103.6 16.4 185 154-358 16-204 (226)
152 3sb4_A Hypothetical leucine ri 98.9 2.6E-09 8.8E-14 116.9 9.1 98 629-739 225-327 (329)
153 3g39_A Variable lymphocyte rec 98.9 6.3E-09 2.1E-13 101.4 10.7 99 539-641 12-113 (170)
154 4fdw_A Leucine rich hypothetic 98.8 9.1E-08 3.1E-12 106.8 16.6 116 537-662 136-255 (401)
155 1hqc_A RUVB; extended AAA-ATPa 98.7 8E-08 2.7E-12 104.8 15.4 269 156-465 13-324 (324)
156 3sb4_A Hypothetical leucine ri 98.7 3E-08 1E-12 108.3 9.8 77 512-595 48-135 (329)
157 1sxj_B Activator 1 37 kDa subu 98.7 1.5E-07 5.3E-12 102.5 14.1 186 154-358 20-210 (323)
158 2ifg_A High affinity nerve gro 98.6 6.5E-08 2.2E-12 106.7 10.1 98 567-667 14-115 (347)
159 4fdw_A Leucine rich hypothetic 98.6 1.5E-06 5E-11 97.1 20.6 165 535-721 112-279 (401)
160 2ifg_A High affinity nerve gro 98.5 1.7E-07 5.8E-12 103.3 9.8 98 542-641 14-114 (347)
161 3te6_A Regulatory protein SIR3 98.5 1.3E-06 4.3E-11 92.7 14.9 167 159-327 24-211 (318)
162 1iqp_A RFCS; clamp loader, ext 98.4 7E-07 2.4E-11 97.4 12.1 185 155-361 25-215 (327)
163 3un9_A NLR family member X1; l 98.4 1.3E-08 4.5E-13 112.5 -2.6 154 512-667 71-251 (372)
164 4fs7_A Uncharacterized protein 98.4 6E-06 2.1E-10 92.4 18.2 52 897-952 341-393 (394)
165 3un9_A NLR family member X1; l 98.3 4.9E-08 1.7E-12 107.9 -0.4 163 535-706 71-256 (372)
166 2chq_A Replication factor C sm 98.3 6.2E-06 2.1E-10 89.4 15.1 182 155-358 17-204 (319)
167 1jbk_A CLPB protein; beta barr 98.2 3E-06 1E-10 84.1 10.0 154 155-323 22-194 (195)
168 3h4m_A Proteasome-activating n 98.2 1.6E-05 5.5E-10 84.5 15.7 176 154-355 16-228 (285)
169 3bos_A Putative DNA replicatio 98.2 2.4E-06 8.1E-11 88.5 7.3 165 161-357 37-216 (242)
170 1d2n_A N-ethylmaleimide-sensit 98.1 0.00015 5.1E-09 76.3 21.2 177 173-379 61-263 (272)
171 1jr3_A DNA polymerase III subu 98.1 1.6E-05 5.4E-10 88.4 14.1 184 156-358 17-221 (373)
172 4fs7_A Uncharacterized protein 98.1 8.6E-05 3E-09 82.9 20.2 84 779-876 292-375 (394)
173 2qz4_A Paraplegin; AAA+, SPG7, 98.1 4.8E-05 1.6E-09 79.7 16.3 175 154-352 8-215 (262)
174 3pvs_A Replication-associated 98.0 8.5E-05 2.9E-09 83.5 16.5 176 154-358 25-215 (447)
175 1sxj_D Activator 1 41 kDa subu 98.0 3.1E-05 1.1E-09 85.2 12.0 193 156-357 38-234 (353)
176 2z4s_A Chromosomal replication 98.0 3E-05 1E-09 87.5 11.9 171 165-355 118-303 (440)
177 3d8b_A Fidgetin-like protein 1 98.0 0.00029 1E-08 77.1 19.6 159 175-358 116-295 (357)
178 2ra8_A Uncharacterized protein 97.9 6.8E-06 2.3E-10 89.8 6.1 35 732-766 278-318 (362)
179 1sxj_E Activator 1 40 kDa subu 97.9 4.9E-05 1.7E-09 83.7 12.9 196 156-358 15-237 (354)
180 3e4g_A ATP synthase subunit S, 97.9 8.2E-06 2.8E-10 77.9 4.9 40 812-855 61-100 (176)
181 3eie_A Vacuolar protein sortin 97.9 0.00036 1.2E-08 75.3 18.3 155 176-357 51-227 (322)
182 2ra8_A Uncharacterized protein 97.8 3.7E-06 1.3E-10 92.0 1.9 138 556-701 167-319 (362)
183 1sxj_A Activator 1 95 kDa subu 97.8 4.3E-05 1.5E-09 88.3 10.7 190 154-358 38-253 (516)
184 3pfi_A Holliday junction ATP-d 97.8 0.00033 1.1E-08 76.4 17.0 170 154-357 28-226 (338)
185 1a5t_A Delta prime, HOLB; zinc 97.8 0.00027 9.1E-09 76.7 16.0 171 162-357 9-204 (334)
186 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00054 1.9E-08 73.7 18.3 157 176-358 45-223 (322)
187 3b9p_A CG5977-PA, isoform A; A 97.8 0.0012 4.2E-08 70.2 20.1 156 175-357 53-232 (297)
188 3uk6_A RUVB-like 2; hexameric 97.8 0.00021 7.3E-09 78.9 14.4 49 307-356 252-301 (368)
189 3e4g_A ATP synthase subunit S, 97.7 1.8E-05 6.3E-10 75.5 4.7 91 784-882 61-154 (176)
190 1l8q_A Chromosomal replication 97.7 0.00022 7.7E-09 77.1 13.9 164 165-353 24-203 (324)
191 2p65_A Hypothetical protein PF 97.7 0.00014 4.9E-09 71.3 11.1 47 155-201 22-68 (187)
192 3vfd_A Spastin; ATPase, microt 97.7 0.00095 3.2E-08 74.1 18.9 179 154-357 114-325 (389)
193 2qp9_X Vacuolar protein sortin 97.7 0.00047 1.6E-08 75.3 15.7 155 177-358 85-261 (355)
194 1io0_A Tropomodulin; LRR prote 97.6 2.2E-05 7.6E-10 77.1 3.3 110 556-667 31-163 (185)
195 3syl_A Protein CBBX; photosynt 97.6 9.5E-05 3.3E-09 79.5 8.3 133 174-328 65-218 (309)
196 4b4t_J 26S protease regulatory 97.6 0.0034 1.2E-07 68.2 20.2 151 175-351 181-354 (405)
197 1sxj_C Activator 1 40 kDa subu 97.6 0.00057 1.9E-08 74.4 14.4 176 157-355 27-209 (340)
198 2zan_A Vacuolar protein sortin 97.6 0.0018 6.3E-08 72.9 18.9 159 175-357 166-344 (444)
199 3u61_B DNA polymerase accessor 97.5 0.00047 1.6E-08 74.6 12.6 172 154-355 25-213 (324)
200 3rw6_A Nuclear RNA export fact 97.5 1.2E-05 4.2E-10 83.0 -0.3 60 582-642 168-232 (267)
201 4b4t_H 26S protease regulatory 97.4 0.0044 1.5E-07 68.3 18.6 152 174-351 241-415 (467)
202 4gt6_A Cell surface protein; l 97.4 0.012 3.9E-07 65.5 22.5 119 537-663 65-190 (394)
203 3pxg_A Negative regulator of g 97.4 0.00079 2.7E-08 76.5 13.0 152 154-328 179-339 (468)
204 3cf0_A Transitional endoplasmi 97.4 0.0023 7.7E-08 68.2 15.7 154 174-353 47-223 (301)
205 4b4t_I 26S protease regulatory 97.4 0.0054 1.8E-07 66.9 17.8 151 175-351 215-388 (437)
206 4b4t_L 26S protease subunit RP 97.3 0.0051 1.8E-07 68.0 18.0 151 175-351 214-387 (437)
207 3rw6_A Nuclear RNA export fact 97.3 0.00023 7.8E-09 73.5 6.7 78 558-636 167-257 (267)
208 1io0_A Tropomodulin; LRR prote 97.3 0.00012 4.2E-09 71.8 4.3 108 533-641 33-162 (185)
209 1qvr_A CLPB protein; coiled co 97.3 0.00069 2.4E-08 83.4 11.9 158 154-327 169-345 (854)
210 4b4t_M 26S protease regulatory 97.3 0.0026 8.9E-08 70.3 15.0 151 175-351 214-387 (434)
211 3ec2_A DNA replication protein 97.3 0.00015 5.2E-09 70.8 4.6 114 162-296 21-142 (180)
212 4b4t_K 26S protease regulatory 97.3 0.0092 3.1E-07 65.8 18.6 151 175-351 205-379 (428)
213 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0038 1.3E-07 76.0 16.1 158 154-327 185-362 (758)
214 3pxi_A Negative regulator of g 97.1 0.0032 1.1E-07 76.5 14.8 152 154-328 179-339 (758)
215 2ce7_A Cell division protein F 97.1 0.0046 1.6E-07 69.5 14.6 172 154-351 18-221 (476)
216 1in4_A RUVB, holliday junction 97.1 0.008 2.7E-07 64.9 16.1 50 307-357 173-222 (334)
217 3n70_A Transport activator; si 97.1 0.00042 1.4E-08 64.8 5.2 23 177-199 25-47 (145)
218 2gno_A DNA polymerase III, gam 97.1 0.0017 5.8E-08 68.9 10.3 145 162-327 4-152 (305)
219 4gt6_A Cell surface protein; l 97.1 0.0096 3.3E-07 66.1 17.0 145 514-665 65-215 (394)
220 3hu3_A Transitional endoplasmi 97.0 0.0042 1.4E-07 70.5 13.7 151 174-350 236-406 (489)
221 1lv7_A FTSH; alpha/beta domain 97.0 0.0061 2.1E-07 63.1 14.0 175 154-354 14-221 (257)
222 2w58_A DNAI, primosome compone 97.0 0.0024 8.3E-08 63.4 9.6 112 163-296 37-158 (202)
223 4h09_A Hypothetical leucine ri 96.9 0.014 4.8E-07 64.4 16.6 52 513-568 46-98 (379)
224 2kjq_A DNAA-related protein; s 96.8 0.00083 2.8E-08 62.9 4.3 40 175-219 35-74 (149)
225 1ofh_A ATP-dependent HSL prote 96.7 0.0091 3.1E-07 63.8 12.8 25 176-200 50-74 (310)
226 2r62_A Cell division protease 96.7 0.0016 5.6E-08 68.1 6.1 49 153-201 12-69 (268)
227 3t15_A Ribulose bisphosphate c 96.7 0.0083 2.8E-07 63.4 11.5 26 175-200 35-60 (293)
228 3cf2_A TER ATPase, transitiona 96.6 0.011 3.9E-07 70.4 13.2 152 175-352 237-408 (806)
229 4fcw_A Chaperone protein CLPB; 96.6 0.0041 1.4E-07 66.6 8.3 40 176-220 47-86 (311)
230 1n0w_A DNA repair protein RAD5 96.3 0.024 8.1E-07 58.0 12.0 95 176-271 24-131 (243)
231 3m6a_A ATP-dependent protease 96.3 0.017 5.9E-07 66.6 11.8 26 175-200 107-132 (543)
232 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0037 1.2E-07 65.5 4.7 69 177-271 124-194 (331)
233 2z43_A DNA repair and recombin 96.1 0.032 1.1E-06 59.8 12.1 95 176-271 107-215 (324)
234 3hr8_A Protein RECA; alpha and 96.1 0.023 7.9E-07 61.1 10.8 86 176-271 61-151 (356)
235 2bjv_A PSP operon transcriptio 96.1 0.0066 2.2E-07 63.3 6.4 24 177-200 30-53 (265)
236 2xxa_A Signal recognition part 96.0 0.25 8.6E-06 54.8 19.2 27 175-201 99-125 (433)
237 3dm5_A SRP54, signal recogniti 96.0 0.13 4.5E-06 56.7 16.6 27 175-201 99-125 (443)
238 4h09_A Hypothetical leucine ri 96.0 0.034 1.2E-06 61.3 12.2 124 533-663 214-341 (379)
239 2dhr_A FTSH; AAA+ protein, hex 96.0 0.031 1.1E-06 63.2 11.8 170 153-351 32-236 (499)
240 1v5w_A DMC1, meiotic recombina 96.0 0.039 1.3E-06 59.6 12.2 96 175-271 121-231 (343)
241 3pxi_A Negative regulator of g 95.9 0.0085 2.9E-07 72.8 7.3 126 177-327 522-675 (758)
242 2i1q_A DNA repair and recombin 95.9 0.035 1.2E-06 59.5 11.3 95 175-270 97-215 (322)
243 4a74_A DNA repair and recombin 95.9 0.064 2.2E-06 54.1 12.6 59 176-235 25-84 (231)
244 2cvh_A DNA repair and recombin 95.8 0.028 9.4E-07 56.4 9.6 45 176-228 20-64 (220)
245 1iy2_A ATP-dependent metallopr 95.8 0.12 4.1E-06 53.9 14.6 148 178-351 75-245 (278)
246 3lda_A DNA repair protein RAD5 95.7 0.056 1.9E-06 59.3 12.2 95 176-271 178-285 (400)
247 3io5_A Recombination and repai 95.7 0.042 1.4E-06 57.2 10.3 87 178-272 30-124 (333)
248 2zr9_A Protein RECA, recombina 95.6 0.043 1.5E-06 59.2 10.3 87 175-271 60-151 (349)
249 3kl4_A SRP54, signal recogniti 95.6 0.12 4.1E-06 57.0 13.9 28 175-202 96-123 (433)
250 2ehv_A Hypothetical protein PH 95.5 0.014 4.7E-07 60.1 6.0 24 175-198 29-52 (251)
251 1xp8_A RECA protein, recombina 95.4 0.048 1.6E-06 59.1 10.1 86 176-271 74-164 (366)
252 1u94_A RECA protein, recombina 95.4 0.05 1.7E-06 58.7 10.2 87 175-271 62-153 (356)
253 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.054 1.8E-06 54.8 9.9 47 176-229 23-69 (235)
254 3ice_A Transcription terminati 95.3 0.014 5E-07 62.2 5.4 98 167-271 164-273 (422)
255 1sky_E F1-ATPase, F1-ATP synth 95.1 0.068 2.3E-06 59.1 10.0 91 177-271 152-257 (473)
256 2x8a_A Nuclear valosin-contain 95.1 0.054 1.8E-06 56.4 8.8 126 178-327 46-191 (274)
257 1j8m_F SRP54, signal recogniti 95.1 0.54 1.9E-05 49.2 16.5 88 176-268 98-189 (297)
258 2ffh_A Protein (FFH); SRP54, s 95.0 0.6 2E-05 51.4 17.4 57 175-237 97-155 (425)
259 2q6t_A DNAB replication FORK h 95.0 0.27 9.3E-06 55.1 15.0 63 163-233 189-251 (444)
260 2r6a_A DNAB helicase, replicat 95.0 0.36 1.2E-05 54.3 15.9 61 163-231 192-252 (454)
261 3e70_C DPA, signal recognition 94.9 0.77 2.6E-05 48.7 17.3 58 174-236 127-185 (328)
262 1pzn_A RAD51, DNA repair and r 94.9 0.14 4.8E-06 55.2 11.8 71 163-235 119-190 (349)
263 1ypw_A Transitional endoplasmi 94.8 0.17 6E-06 61.2 13.6 130 175-329 237-387 (806)
264 3c8u_A Fructokinase; YP_612366 94.8 0.029 9.9E-07 55.8 5.5 39 163-201 7-47 (208)
265 1rz3_A Hypothetical protein rb 94.7 0.03 1E-06 55.3 5.6 40 162-201 5-47 (201)
266 1r6b_X CLPA protein; AAA+, N-t 94.7 0.048 1.7E-06 66.2 8.4 24 177-200 489-512 (758)
267 2ck3_D ATP synthase subunit be 94.6 0.15 5.3E-06 56.2 11.2 93 175-271 152-265 (482)
268 3kb2_A SPBC2 prophage-derived 94.5 0.021 7.1E-07 54.8 3.7 24 177-200 2-25 (173)
269 1jr3_D DNA polymerase III, del 94.4 0.32 1.1E-05 52.4 13.4 157 174-356 16-183 (343)
270 2px0_A Flagellar biosynthesis 94.4 0.11 3.7E-06 54.6 9.0 27 175-201 104-130 (296)
271 1fx0_B ATP synthase beta chain 94.4 0.19 6.6E-06 55.6 11.2 93 175-271 164-278 (498)
272 1qhx_A CPT, protein (chloramph 94.3 0.023 7.8E-07 54.9 3.6 24 177-200 4-27 (178)
273 3lw7_A Adenylate kinase relate 94.3 0.021 7E-07 55.0 3.1 22 177-199 2-23 (179)
274 3vaa_A Shikimate kinase, SK; s 94.2 0.025 8.6E-07 55.8 3.7 26 175-200 24-49 (199)
275 2dr3_A UPF0273 protein PH0284; 94.2 0.15 5.2E-06 52.0 9.7 47 176-229 23-69 (247)
276 3bh0_A DNAB-like replicative h 94.2 0.16 5.4E-06 54.0 10.0 62 163-233 57-118 (315)
277 1zp6_A Hypothetical protein AT 94.1 0.026 8.8E-07 55.2 3.4 25 175-199 8-32 (191)
278 3rfe_A Platelet glycoprotein I 94.1 0.063 2.2E-06 48.5 5.6 54 611-667 12-67 (130)
279 1kgd_A CASK, peripheral plasma 94.0 0.028 9.5E-07 54.4 3.4 24 177-200 6-29 (180)
280 3trf_A Shikimate kinase, SK; a 94.0 0.031 1.1E-06 54.3 3.7 25 176-200 5-29 (185)
281 1ly1_A Polynucleotide kinase; 94.0 0.031 1E-06 54.0 3.6 22 177-198 3-24 (181)
282 3uie_A Adenylyl-sulfate kinase 93.9 0.039 1.3E-06 54.5 4.2 28 174-201 23-50 (200)
283 1nks_A Adenylate kinase; therm 93.8 0.036 1.2E-06 54.2 3.9 25 177-201 2-26 (194)
284 1kag_A SKI, shikimate kinase I 93.8 0.026 9E-07 54.1 2.8 24 177-200 5-28 (173)
285 2hf9_A Probable hydrogenase ni 93.8 0.055 1.9E-06 54.5 5.3 36 165-200 27-62 (226)
286 1ls1_A Signal recognition part 93.8 0.23 8E-06 52.1 10.2 87 175-268 97-189 (295)
287 4eun_A Thermoresistant glucoki 93.8 0.038 1.3E-06 54.6 3.9 27 174-200 27-53 (200)
288 4a1f_A DNAB helicase, replicat 93.7 0.26 8.9E-06 52.4 10.5 62 163-233 35-96 (338)
289 3t61_A Gluconokinase; PSI-biol 93.7 0.03 1E-06 55.4 3.0 25 176-200 18-42 (202)
290 1xjc_A MOBB protein homolog; s 93.7 0.043 1.5E-06 51.9 3.9 27 175-201 3-29 (169)
291 1qvr_A CLPB protein; coiled co 93.6 0.08 2.7E-06 65.0 7.3 24 177-200 589-612 (854)
292 2wsm_A Hydrogenase expression/ 93.6 0.05 1.7E-06 54.6 4.6 37 164-200 18-54 (221)
293 2rhm_A Putative kinase; P-loop 93.6 0.047 1.6E-06 53.3 4.3 25 176-200 5-29 (193)
294 1ex7_A Guanylate kinase; subst 93.6 0.031 1.1E-06 54.0 2.8 23 177-199 2-24 (186)
295 1vma_A Cell division protein F 93.6 0.26 8.7E-06 51.9 10.1 28 175-202 103-130 (306)
296 1kht_A Adenylate kinase; phosp 93.6 0.04 1.4E-06 53.8 3.7 25 177-201 4-28 (192)
297 2ze6_A Isopentenyl transferase 93.6 0.042 1.4E-06 56.5 3.9 24 177-200 2-25 (253)
298 1ye8_A Protein THEP1, hypothet 93.5 0.043 1.5E-06 52.8 3.7 24 178-201 2-25 (178)
299 3iij_A Coilin-interacting nucl 93.5 0.038 1.3E-06 53.4 3.3 25 176-200 11-35 (180)
300 1knq_A Gluconate kinase; ALFA/ 93.5 0.045 1.6E-06 52.5 3.9 24 176-199 8-31 (175)
301 1odf_A YGR205W, hypothetical 3 93.5 0.066 2.3E-06 56.0 5.4 28 174-201 29-56 (290)
302 2jaq_A Deoxyguanosine kinase; 93.4 0.043 1.5E-06 54.2 3.7 23 178-200 2-24 (205)
303 1zuh_A Shikimate kinase; alpha 93.4 0.045 1.6E-06 52.1 3.6 26 175-200 6-31 (168)
304 2bdt_A BH3686; alpha-beta prot 93.4 0.044 1.5E-06 53.4 3.6 22 177-198 3-24 (189)
305 3tr0_A Guanylate kinase, GMP k 93.4 0.041 1.4E-06 54.5 3.4 24 176-199 7-30 (205)
306 1via_A Shikimate kinase; struc 93.4 0.039 1.3E-06 53.1 3.1 24 177-200 5-28 (175)
307 3a00_A Guanylate kinase, GMP k 93.3 0.037 1.3E-06 53.9 2.8 24 177-200 2-25 (186)
308 2yvu_A Probable adenylyl-sulfa 93.3 0.06 2E-06 52.3 4.3 27 175-201 12-38 (186)
309 2c95_A Adenylate kinase 1; tra 93.2 0.054 1.8E-06 53.1 4.0 26 175-200 8-33 (196)
310 3tau_A Guanylate kinase, GMP k 93.2 0.051 1.8E-06 53.9 3.8 26 175-200 7-32 (208)
311 1tev_A UMP-CMP kinase; ploop, 93.2 0.055 1.9E-06 53.0 3.9 25 176-200 3-27 (196)
312 2ga8_A Hypothetical 39.9 kDa p 93.2 0.094 3.2E-06 55.8 5.8 31 171-201 19-49 (359)
313 3rfe_A Platelet glycoprotein I 93.1 0.13 4.4E-06 46.4 6.0 34 562-595 32-66 (130)
314 2if2_A Dephospho-COA kinase; a 93.1 0.049 1.7E-06 53.9 3.5 22 177-198 2-23 (204)
315 3umf_A Adenylate kinase; rossm 93.1 0.059 2E-06 53.5 4.0 27 174-200 27-53 (217)
316 3asz_A Uridine kinase; cytidin 93.1 0.057 1.9E-06 53.7 3.9 27 175-201 5-31 (211)
317 1y63_A LMAJ004144AAA protein; 93.1 0.062 2.1E-06 52.1 4.1 25 175-199 9-33 (184)
318 1ixz_A ATP-dependent metallopr 93.1 0.084 2.9E-06 54.3 5.3 23 178-200 51-73 (254)
319 2iyv_A Shikimate kinase, SK; t 93.1 0.043 1.5E-06 53.2 2.9 24 177-200 3-26 (184)
320 1ukz_A Uridylate kinase; trans 93.0 0.064 2.2E-06 53.0 4.2 26 174-199 13-38 (203)
321 1uf9_A TT1252 protein; P-loop, 93.0 0.061 2.1E-06 53.1 4.0 25 174-198 6-30 (203)
322 2qor_A Guanylate kinase; phosp 93.0 0.047 1.6E-06 54.0 3.2 25 176-200 12-36 (204)
323 2bwj_A Adenylate kinase 5; pho 93.0 0.057 2E-06 53.1 3.8 25 176-200 12-36 (199)
324 1cke_A CK, MSSA, protein (cyti 93.0 0.055 1.9E-06 54.6 3.7 24 177-200 6-29 (227)
325 2bbw_A Adenylate kinase 4, AK4 93.0 0.058 2E-06 55.2 3.9 25 176-200 27-51 (246)
326 3cm0_A Adenylate kinase; ATP-b 93.0 0.06 2.1E-06 52.2 3.8 24 177-200 5-28 (186)
327 2j37_W Signal recognition part 92.9 0.63 2.1E-05 52.5 12.5 27 175-201 100-126 (504)
328 1lvg_A Guanylate kinase, GMP k 92.9 0.046 1.6E-06 53.8 2.8 24 177-200 5-28 (198)
329 2j41_A Guanylate kinase; GMP, 92.9 0.054 1.9E-06 53.6 3.4 25 176-200 6-30 (207)
330 3co5_A Putative two-component 92.9 0.027 9.1E-07 52.1 1.0 23 177-199 28-50 (143)
331 4gp7_A Metallophosphoesterase; 92.9 0.049 1.7E-06 52.1 2.9 23 175-197 8-30 (171)
332 2plr_A DTMP kinase, probable t 92.8 0.064 2.2E-06 53.3 3.9 25 177-201 5-29 (213)
333 1e6c_A Shikimate kinase; phosp 92.8 0.052 1.8E-06 51.9 3.1 24 177-200 3-26 (173)
334 3ney_A 55 kDa erythrocyte memb 92.8 0.063 2.1E-06 52.3 3.6 26 175-200 18-43 (197)
335 1qf9_A UMP/CMP kinase, protein 92.8 0.069 2.4E-06 52.1 4.0 25 176-200 6-30 (194)
336 2qt1_A Nicotinamide riboside k 92.7 0.067 2.3E-06 53.0 3.9 25 175-199 20-44 (207)
337 1g5t_A COB(I)alamin adenosyltr 92.7 0.13 4.4E-06 49.7 5.6 117 176-297 28-163 (196)
338 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.07 2.4E-06 55.1 4.0 26 176-201 4-29 (260)
339 1htw_A HI0065; nucleotide-bind 92.6 0.069 2.3E-06 50.2 3.5 27 174-200 31-57 (158)
340 1jjv_A Dephospho-COA kinase; P 92.6 0.062 2.1E-06 53.2 3.4 22 177-198 3-24 (206)
341 2pbr_A DTMP kinase, thymidylat 92.6 0.069 2.3E-06 52.2 3.7 24 178-201 2-25 (195)
342 2pt5_A Shikimate kinase, SK; a 92.6 0.07 2.4E-06 50.8 3.6 23 178-200 2-24 (168)
343 2cdn_A Adenylate kinase; phosp 92.6 0.079 2.7E-06 52.2 4.1 26 175-200 19-44 (201)
344 1znw_A Guanylate kinase, GMP k 92.5 0.063 2.2E-06 53.2 3.3 26 175-200 19-44 (207)
345 1uj2_A Uridine-cytidine kinase 92.5 0.076 2.6E-06 54.5 3.9 27 174-200 20-46 (252)
346 3vr4_D V-type sodium ATPase su 92.4 0.25 8.5E-06 54.2 8.0 94 176-270 151-259 (465)
347 1aky_A Adenylate kinase; ATP:A 92.4 0.078 2.7E-06 53.1 3.9 25 176-200 4-28 (220)
348 1rj9_A FTSY, signal recognitio 92.3 0.089 3E-06 55.4 4.3 28 175-202 101-128 (304)
349 2wwf_A Thymidilate kinase, put 92.3 0.086 2.9E-06 52.4 4.0 26 176-201 10-35 (212)
350 1gtv_A TMK, thymidylate kinase 92.3 0.048 1.7E-06 54.3 2.1 25 177-201 1-25 (214)
351 2f1r_A Molybdopterin-guanine d 92.3 0.066 2.3E-06 51.0 2.9 27 176-202 2-28 (171)
352 3aez_A Pantothenate kinase; tr 92.3 0.081 2.8E-06 56.0 3.9 28 174-201 88-115 (312)
353 2jeo_A Uridine-cytidine kinase 92.2 0.086 2.9E-06 53.9 4.0 27 174-200 23-49 (245)
354 1gvn_B Zeta; postsegregational 92.2 0.12 4E-06 54.2 5.0 25 175-199 32-56 (287)
355 1nn5_A Similar to deoxythymidy 92.2 0.089 3.1E-06 52.4 4.0 26 176-201 9-34 (215)
356 2vli_A Antibiotic resistance p 92.2 0.057 1.9E-06 52.3 2.5 25 176-200 5-29 (183)
357 2grj_A Dephospho-COA kinase; T 92.2 0.087 3E-06 51.3 3.8 25 175-199 11-35 (192)
358 4e22_A Cytidylate kinase; P-lo 92.2 0.077 2.6E-06 54.4 3.5 26 175-200 26-51 (252)
359 3fwy_A Light-independent proto 92.1 0.081 2.8E-06 56.1 3.7 41 174-219 46-86 (314)
360 1zd8_A GTP:AMP phosphotransfer 92.1 0.08 2.7E-06 53.4 3.5 24 176-199 7-30 (227)
361 1z6g_A Guanylate kinase; struc 92.1 0.066 2.3E-06 53.6 2.9 25 176-200 23-47 (218)
362 2c61_A A-type ATP synthase non 92.1 0.25 8.7E-06 54.5 7.6 95 175-270 151-260 (469)
363 2i3b_A HCR-ntpase, human cance 92.0 0.076 2.6E-06 51.6 3.1 25 177-201 2-26 (189)
364 1zak_A Adenylate kinase; ATP:A 92.0 0.085 2.9E-06 52.9 3.6 25 176-200 5-29 (222)
365 1s96_A Guanylate kinase, GMP k 92.0 0.084 2.9E-06 52.7 3.4 25 176-200 16-40 (219)
366 3fb4_A Adenylate kinase; psych 91.9 0.092 3.1E-06 52.4 3.7 23 178-200 2-24 (216)
367 3tqc_A Pantothenate kinase; bi 91.9 0.13 4.6E-06 54.3 5.0 27 175-201 91-117 (321)
368 2c9o_A RUVB-like 1; hexameric 91.9 0.14 4.7E-06 57.8 5.5 48 154-201 39-88 (456)
369 3b9q_A Chloroplast SRP recepto 91.9 0.11 3.8E-06 54.6 4.4 28 175-202 99-126 (302)
370 2z0h_A DTMP kinase, thymidylat 91.8 0.097 3.3E-06 51.3 3.7 24 178-201 2-25 (197)
371 3l0o_A Transcription terminati 91.7 0.055 1.9E-06 57.7 1.8 36 166-201 164-200 (427)
372 3v9p_A DTMP kinase, thymidylat 91.7 0.52 1.8E-05 47.1 8.9 27 176-202 25-51 (227)
373 1np6_A Molybdopterin-guanine d 91.7 0.11 3.9E-06 49.5 3.8 27 175-201 5-31 (174)
374 1m7g_A Adenylylsulfate kinase; 91.6 0.11 3.8E-06 51.6 3.9 28 174-201 23-50 (211)
375 3cmu_A Protein RECA, recombina 91.6 0.32 1.1E-05 63.5 8.8 98 163-270 1414-1516(2050)
376 3dl0_A Adenylate kinase; phosp 91.6 0.097 3.3E-06 52.2 3.4 22 178-199 2-23 (216)
377 3tlx_A Adenylate kinase 2; str 91.6 0.12 4E-06 52.7 4.1 27 174-200 27-53 (243)
378 2onk_A Molybdate/tungstate ABC 91.5 0.1 3.4E-06 53.0 3.4 25 174-199 23-47 (240)
379 1tue_A Replication protein E1; 91.5 0.13 4.5E-06 49.9 4.0 25 177-201 59-83 (212)
380 3d3q_A TRNA delta(2)-isopenten 91.5 0.11 3.6E-06 55.2 3.7 24 177-200 8-31 (340)
381 2pez_A Bifunctional 3'-phospho 91.5 0.12 4.1E-06 49.8 3.9 26 176-201 5-30 (179)
382 3mfy_A V-type ATP synthase alp 91.5 0.4 1.4E-05 53.6 8.4 90 175-271 226-336 (588)
383 3sr0_A Adenylate kinase; phosp 91.5 0.11 3.9E-06 51.1 3.7 23 178-200 2-24 (206)
384 1g8p_A Magnesium-chelatase 38 91.5 0.09 3.1E-06 57.0 3.3 44 157-200 26-69 (350)
385 3gqb_B V-type ATP synthase bet 91.4 0.41 1.4E-05 52.5 8.2 95 176-270 147-262 (464)
386 2v54_A DTMP kinase, thymidylat 91.4 0.1 3.6E-06 51.4 3.4 25 176-200 4-28 (204)
387 3r20_A Cytidylate kinase; stru 91.3 0.12 4.1E-06 51.8 3.7 25 176-200 9-33 (233)
388 3nwj_A ATSK2; P loop, shikimat 91.2 0.1 3.4E-06 53.3 3.1 25 176-200 48-72 (250)
389 2f6r_A COA synthase, bifunctio 91.2 0.13 4.3E-06 53.8 4.0 23 175-197 74-96 (281)
390 2og2_A Putative signal recogni 91.2 0.15 5E-06 55.0 4.4 28 175-202 156-183 (359)
391 2pcj_A ABC transporter, lipopr 91.1 0.099 3.4E-06 52.5 2.8 24 176-199 30-53 (224)
392 1vht_A Dephospho-COA kinase; s 91.0 0.14 4.8E-06 51.2 3.9 23 176-198 4-26 (218)
393 3ake_A Cytidylate kinase; CMP 91.0 0.13 4.5E-06 50.8 3.7 23 178-200 4-26 (208)
394 3be4_A Adenylate kinase; malar 91.0 0.14 4.6E-06 51.2 3.8 24 177-200 6-29 (217)
395 1pgv_A TMD-1, tropomodulin TMD 90.9 0.097 3.3E-06 50.8 2.5 82 558-639 38-135 (197)
396 3lnc_A Guanylate kinase, GMP k 90.9 0.08 2.8E-06 53.5 2.1 24 176-199 27-51 (231)
397 2b8t_A Thymidine kinase; deoxy 90.9 0.084 2.9E-06 52.6 2.1 111 176-297 12-126 (223)
398 1e4v_A Adenylate kinase; trans 90.9 0.14 4.8E-06 51.0 3.8 23 178-200 2-24 (214)
399 1cr0_A DNA primase/helicase; R 90.9 0.42 1.4E-05 50.3 7.7 53 175-233 34-86 (296)
400 2p5t_B PEZT; postsegregational 90.9 0.1 3.5E-06 53.5 2.8 26 175-200 31-56 (253)
401 3tif_A Uncharacterized ABC tra 90.8 0.12 4E-06 52.4 3.1 25 175-199 30-54 (235)
402 1sq5_A Pantothenate kinase; P- 90.8 0.15 5E-06 54.1 4.0 27 174-200 78-104 (308)
403 2xb4_A Adenylate kinase; ATP-b 90.8 0.14 4.7E-06 51.4 3.7 23 178-200 2-24 (223)
404 3hjn_A DTMP kinase, thymidylat 90.8 1.2 4.1E-05 43.3 10.4 25 178-202 2-26 (197)
405 3p32_A Probable GTPase RV1496/ 90.8 0.26 8.9E-06 53.4 6.1 37 165-201 66-104 (355)
406 2r44_A Uncharacterized protein 90.7 0.34 1.2E-05 52.0 7.0 38 161-200 33-70 (331)
407 1q57_A DNA primase/helicase; d 90.7 0.95 3.3E-05 51.6 11.0 62 164-233 232-293 (503)
408 3crm_A TRNA delta(2)-isopenten 90.7 0.14 4.7E-06 54.0 3.5 24 177-200 6-29 (323)
409 3b85_A Phosphate starvation-in 90.6 0.096 3.3E-06 51.7 2.2 23 177-199 23-45 (208)
410 1ak2_A Adenylate kinase isoenz 90.6 0.16 5.6E-06 51.3 4.1 25 176-200 16-40 (233)
411 3bgw_A DNAB-like replicative h 90.6 0.8 2.7E-05 51.0 9.9 61 163-232 186-246 (444)
412 2cbz_A Multidrug resistance-as 90.4 0.12 4E-06 52.4 2.8 26 175-200 30-55 (237)
413 3exa_A TRNA delta(2)-isopenten 90.4 0.14 4.9E-06 53.3 3.4 25 176-200 3-27 (322)
414 2d2e_A SUFC protein; ABC-ATPas 90.4 0.14 4.8E-06 52.3 3.3 24 176-199 29-52 (250)
415 2qgz_A Helicase loader, putati 90.3 0.27 9.2E-06 52.0 5.6 39 163-201 136-177 (308)
416 1zu4_A FTSY; GTPase, signal re 90.3 0.19 6.7E-06 53.3 4.4 27 175-201 104-130 (320)
417 2yhs_A FTSY, cell division pro 90.3 0.19 6.7E-06 55.9 4.5 27 175-201 292-318 (503)
418 3gfo_A Cobalt import ATP-bindi 90.3 0.14 4.6E-06 53.1 3.1 24 176-199 34-57 (275)
419 1b0u_A Histidine permease; ABC 90.2 0.12 4.2E-06 53.1 2.8 25 175-199 31-55 (262)
420 3a8t_A Adenylate isopentenyltr 90.2 0.13 4.6E-06 54.2 3.0 26 175-200 39-64 (339)
421 1sgw_A Putative ABC transporte 90.2 0.11 3.7E-06 51.6 2.2 24 176-199 35-58 (214)
422 1ji0_A ABC transporter; ATP bi 90.2 0.13 4.4E-06 52.2 2.8 24 176-199 32-55 (240)
423 1oix_A RAS-related protein RAB 90.1 0.17 5.7E-06 49.3 3.5 24 176-199 29-52 (191)
424 2olj_A Amino acid ABC transpor 90.1 0.13 4.4E-06 52.9 2.7 25 175-199 49-73 (263)
425 2zu0_C Probable ATP-dependent 90.1 0.15 5.2E-06 52.6 3.3 25 175-199 45-69 (267)
426 2zts_A Putative uncharacterize 90.1 0.41 1.4E-05 48.7 6.7 49 176-230 30-78 (251)
427 2pze_A Cystic fibrosis transme 90.1 0.13 4.5E-06 51.7 2.7 25 176-200 34-58 (229)
428 1g6h_A High-affinity branched- 90.0 0.13 4.6E-06 52.7 2.8 24 176-199 33-56 (257)
429 4g1u_C Hemin import ATP-bindin 90.0 0.15 5.1E-06 52.6 3.1 25 175-199 36-60 (266)
430 1mv5_A LMRA, multidrug resista 89.9 0.14 4.9E-06 52.0 2.9 26 175-200 27-52 (243)
431 3cmw_A Protein RECA, recombina 89.9 0.69 2.4E-05 59.6 9.6 87 175-271 382-473 (1706)
432 3foz_A TRNA delta(2)-isopenten 89.8 0.18 6.2E-06 52.5 3.5 26 175-200 9-34 (316)
433 1vpl_A ABC transporter, ATP-bi 89.8 0.14 4.8E-06 52.4 2.8 25 175-199 40-64 (256)
434 2ff7_A Alpha-hemolysin translo 89.8 0.14 4.9E-06 52.1 2.8 24 176-199 35-58 (247)
435 3lv8_A DTMP kinase, thymidylat 89.8 0.55 1.9E-05 47.2 7.0 27 176-202 27-53 (236)
436 2ghi_A Transport protein; mult 89.6 0.15 5.1E-06 52.4 2.8 25 175-199 45-69 (260)
437 2qi9_C Vitamin B12 import ATP- 89.6 0.15 5.2E-06 51.9 2.8 24 176-199 26-49 (249)
438 3cmu_A Protein RECA, recombina 89.5 0.69 2.4E-05 60.5 9.2 87 175-271 382-473 (2050)
439 1a7j_A Phosphoribulokinase; tr 89.5 0.11 3.9E-06 54.3 1.8 26 175-200 4-29 (290)
440 2ixe_A Antigen peptide transpo 89.5 0.15 5.3E-06 52.7 2.8 26 175-200 44-69 (271)
441 4tmk_A Protein (thymidylate ki 89.4 0.65 2.2E-05 45.9 7.2 26 177-202 4-29 (213)
442 4eaq_A DTMP kinase, thymidylat 89.4 0.23 7.7E-06 50.0 3.9 27 175-201 25-51 (229)
443 1yrb_A ATP(GTP)binding protein 89.4 0.24 8.1E-06 51.1 4.2 26 175-200 13-38 (262)
444 2eyu_A Twitching motility prot 89.4 0.21 7E-06 51.4 3.6 28 174-201 23-50 (261)
445 2nq2_C Hypothetical ABC transp 89.4 0.16 5.5E-06 51.9 2.7 25 176-200 31-55 (253)
446 2v9p_A Replication protein E1; 89.3 0.18 6.3E-06 52.8 3.2 27 174-200 124-150 (305)
447 3vr4_A V-type sodium ATPase ca 89.3 0.51 1.7E-05 53.1 6.8 88 175-269 231-339 (600)
448 2yz2_A Putative ABC transporte 89.3 0.16 5.6E-06 52.4 2.8 25 175-199 32-56 (266)
449 3hws_A ATP-dependent CLP prote 89.3 0.29 9.9E-06 53.3 5.0 25 176-200 51-75 (363)
450 1pgv_A TMD-1, tropomodulin TMD 89.3 0.15 5.2E-06 49.4 2.4 115 580-699 37-167 (197)
451 1ojl_A Transcriptional regulat 89.3 0.38 1.3E-05 50.8 5.7 24 176-199 25-48 (304)
452 2ihy_A ABC transporter, ATP-bi 89.3 0.16 5.6E-06 52.7 2.8 25 175-199 46-70 (279)
453 3end_A Light-independent proto 89.2 0.24 8.2E-06 52.5 4.2 43 173-220 38-80 (307)
454 2f9l_A RAB11B, member RAS onco 89.2 0.19 6.5E-06 49.2 3.2 24 176-199 5-28 (199)
455 3sop_A Neuronal-specific septi 89.2 0.21 7.2E-06 51.6 3.5 24 178-201 4-27 (270)
456 1ltq_A Polynucleotide kinase; 89.2 0.21 7.1E-06 52.8 3.6 23 177-199 3-25 (301)
457 2dyk_A GTP-binding protein; GT 89.2 0.24 8.1E-06 46.3 3.7 23 177-199 2-24 (161)
458 1q3t_A Cytidylate kinase; nucl 89.1 0.25 8.7E-06 49.9 4.0 26 175-200 15-40 (236)
459 2wji_A Ferrous iron transport 89.1 0.21 7.2E-06 47.2 3.2 22 177-198 4-25 (165)
460 1nlf_A Regulatory protein REPA 89.0 0.2 6.9E-06 52.2 3.3 26 176-201 30-55 (279)
461 3zvl_A Bifunctional polynucleo 88.8 0.2 7E-06 55.5 3.3 26 174-199 256-281 (416)
462 3eph_A TRNA isopentenyltransfe 88.7 0.26 9.1E-06 53.3 4.0 24 177-200 3-26 (409)
463 2r9v_A ATP synthase subunit al 88.5 1.4 4.9E-05 48.8 9.7 90 175-271 174-279 (515)
464 3nbx_X ATPase RAVA; AAA+ ATPas 88.5 0.27 9.4E-06 55.5 4.1 38 161-200 28-65 (500)
465 2qmh_A HPR kinase/phosphorylas 88.4 0.22 7.5E-06 48.0 2.7 24 176-199 34-57 (205)
466 2qe7_A ATP synthase subunit al 88.4 1.6 5.3E-05 48.5 9.8 90 175-271 161-266 (502)
467 2ocp_A DGK, deoxyguanosine kin 88.3 0.31 1.1E-05 49.4 4.1 25 176-200 2-26 (241)
468 2pjz_A Hypothetical protein ST 88.2 0.21 7.3E-06 51.3 2.8 24 176-199 30-53 (263)
469 2r8r_A Sensor protein; KDPD, P 88.2 0.48 1.6E-05 46.8 5.1 24 178-201 8-31 (228)
470 2zej_A Dardarin, leucine-rich 88.2 0.23 7.8E-06 48.0 2.8 21 178-198 4-24 (184)
471 2ce2_X GTPase HRAS; signaling 88.1 0.27 9.4E-06 46.0 3.3 22 178-199 5-26 (166)
472 2vp4_A Deoxynucleoside kinase; 88.0 0.21 7.3E-06 50.3 2.6 24 175-198 19-42 (230)
473 3nh6_A ATP-binding cassette SU 88.0 0.21 7.2E-06 52.5 2.6 26 175-200 79-104 (306)
474 1svm_A Large T antigen; AAA+ f 88.0 0.31 1.1E-05 52.8 4.0 26 174-199 167-192 (377)
475 3oaa_A ATP synthase subunit al 87.9 1.8 6.1E-05 48.0 9.9 90 175-271 161-266 (513)
476 2bbs_A Cystic fibrosis transme 87.9 0.23 8E-06 51.8 2.9 26 175-200 63-88 (290)
477 2www_A Methylmalonic aciduria 87.8 0.5 1.7E-05 50.9 5.5 27 175-201 73-99 (349)
478 2wjg_A FEOB, ferrous iron tran 87.7 0.31 1.1E-05 47.0 3.5 23 177-199 8-30 (188)
479 4edh_A DTMP kinase, thymidylat 87.7 1 3.5E-05 44.5 7.3 25 177-201 7-31 (213)
480 1z2a_A RAS-related protein RAB 87.7 0.29 9.9E-06 46.1 3.2 24 176-199 5-28 (168)
481 1moz_A ARL1, ADP-ribosylation 87.6 0.38 1.3E-05 46.1 4.0 34 165-198 6-40 (183)
482 3gmt_A Adenylate kinase; ssgci 87.5 0.32 1.1E-05 48.4 3.4 25 176-200 8-32 (230)
483 3kta_A Chromosome segregation 87.4 0.32 1.1E-05 46.8 3.4 24 177-200 27-50 (182)
484 1nij_A Hypothetical protein YJ 87.3 0.28 9.4E-06 52.2 3.1 25 175-199 3-27 (318)
485 2v3c_C SRP54, signal recogniti 87.3 0.23 7.9E-06 55.0 2.5 26 176-201 99-124 (432)
486 3con_A GTPase NRAS; structural 87.3 0.31 1.1E-05 47.2 3.2 23 177-199 22-44 (190)
487 3tui_C Methionine import ATP-b 87.3 0.3 1E-05 52.4 3.3 26 175-200 53-78 (366)
488 1fzq_A ADP-ribosylation factor 87.2 0.47 1.6E-05 45.5 4.4 26 174-199 14-39 (181)
489 1zj6_A ADP-ribosylation factor 87.2 0.57 1.9E-05 45.1 5.1 33 165-198 6-38 (187)
490 3fvq_A Fe(3+) IONS import ATP- 87.2 0.31 1.1E-05 52.2 3.4 25 175-199 29-53 (359)
491 2gj8_A MNME, tRNA modification 87.2 0.31 1.1E-05 46.4 3.1 23 177-199 5-27 (172)
492 3k1j_A LON protease, ATP-depen 87.1 0.35 1.2E-05 56.6 4.1 43 156-200 42-84 (604)
493 1cp2_A CP2, nitrogenase iron p 87.1 0.81 2.8E-05 47.2 6.5 39 177-220 2-40 (269)
494 3cf2_A TER ATPase, transitiona 87.0 1.2 4E-05 53.2 8.4 72 176-271 511-582 (806)
495 3io3_A DEHA2D07832P; chaperone 86.9 0.8 2.7E-05 49.1 6.4 48 172-222 14-61 (348)
496 2ged_A SR-beta, signal recogni 86.8 0.4 1.4E-05 46.4 3.8 25 175-199 47-71 (193)
497 3cmw_A Protein RECA, recombina 86.8 1.4 4.9E-05 56.8 9.6 86 175-270 1430-1520(1706)
498 2orw_A Thymidine kinase; TMTK, 86.8 0.42 1.5E-05 46.1 3.8 25 177-201 4-28 (184)
499 1svi_A GTP-binding protein YSX 86.8 0.38 1.3E-05 46.7 3.5 26 174-199 21-46 (195)
500 1u8z_A RAS-related protein RAL 86.8 0.35 1.2E-05 45.4 3.2 23 177-199 5-27 (168)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.2e-44 Score=422.19 Aligned_cols=310 Identities=15% Similarity=0.158 Sum_probs=240.3
Q ss_pred chHHHHHHHHHhhcCC---CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC--CHHHHHHHHHHH
Q 001897 159 TASKTLGKLMKLLDCD---EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL--NLRWVQAQIAER 233 (998)
Q Consensus 159 ~~~~~~~~l~~~l~~~---~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~ 233 (998)
||++++++|.++|..+ +.++|+|+||||+||||||+++|++.. ..+..+|+.++||++++.+ ++..+++.|+++
T Consensus 132 GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~-~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSD-QLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCS-STBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhh-HHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 7888999998888643 689999999999999999999998210 2346789999999999985 899999999999
Q ss_pred hcCCcc-------hhhhHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHHhhcC-C
Q 001897 234 LNLDVK-------MEESMQRLGIRLHERLLRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVCMAMK-T 305 (998)
Q Consensus 234 l~~~~~-------~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~-~ 305 (998)
++.... ...+...+...+.+.+.++|||||||||||+..++ .+. ..+||+||||||++.++..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCC
Confidence 986421 11234556777888887645999999999998654 111 126999999999999999886 4
Q ss_pred CeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCcc
Q 001897 306 DVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAMRGKTNVKLWKHALKEWQKSVPCIK 385 (998)
Q Consensus 306 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~ 385 (998)
...|++++|++++||+||.++++.....+.+++++++|+++|+|+|||++++|+.|+.+. |..+ +.+.......
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~----w~~~-~~l~~~l~~~- 358 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT----FEKM-AQLNNKLESR- 358 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS----HHHH-HHHHHHHHHH-
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch----HHHH-HHhHHHhhcc-
Confidence 468999999999999999999976544467788999999999999999999999998762 4332 2222111000
Q ss_pred cchhhhHHHHHhcccccchhhHHHHh-----------hhccCCCCCccCHHHHHHHHHHh--CCcccccchhHHHHhHhH
Q 001897 386 GIENNVYNSLKWSYDALEGNSKYCFL-----------YCSLFPEDFSIEESELVRYWLAE--GLIDEQENHEDSFNRGIS 452 (998)
Q Consensus 386 ~~~~~i~~~l~~sy~~L~~~lk~cfl-----------~~a~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~~~~~~~~ 452 (998)
...++.+++.+||++||+++|.||+ |||+||+++.|+ ++.|+|+ ||+..........+.+.
T Consensus 359 -~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 359 -GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp -CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-
T ss_pred -cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-
Confidence 1346888999999999999999999 999999999998 8999999 99976542222334444
Q ss_pred HhhhhhhccccccCC--CcCeEEEccchhhHHHHHHh
Q 001897 453 LIENLKDHCLLEDGA--SEGTVKIHDVVRDVAIWIAS 487 (998)
Q Consensus 453 ~~~~L~~~~l~~~~~--~~~~~~mHdlv~d~a~~i~~ 487 (998)
++++|++++|++... ...+|+|||+||++|++++.
T Consensus 433 ~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~ 469 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVD 469 (549)
T ss_dssp HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSC
T ss_pred HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHH
Confidence 899999999998532 34589999999999998775
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.3e-37 Score=364.09 Aligned_cols=283 Identities=18% Similarity=0.214 Sum_probs=223.7
Q ss_pred cchHHHHHHHHHhhcC-CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCe-EEEEEeCCCCCHHHHHHHHHHHhc
Q 001897 158 TTASKTLGKLMKLLDC-DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGM-VIWATVSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 158 ~~~~~~~~~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~ 235 (998)
.||++++++|.+++.. +..++|+|+||||+||||||+++|++.+ +..+|+. ++|+++++.++...++..|++.++
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~r---V~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK---VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCH---HHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhH---HHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 5777888888888765 5689999999999999999999998632 2356886 999999999999888888877543
Q ss_pred CC-------c----chhhhHHHHHHHHHHHHH--cCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHHhh
Q 001897 236 LD-------V----KMEESMQRLGIRLHERLL--RESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVCMA 302 (998)
Q Consensus 236 ~~-------~----~~~~~~~~~~~~l~~~l~--~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 302 (998)
.. . ....+.+.....+.+.+. .++|+||||||||+...|+.+. +||+||||||++.++..
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh
Confidence 11 0 011233445556666552 3579999999999988887642 69999999999999875
Q ss_pred cCCCeEEEcc------CCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHhcCCC-CHHHHHHHHH
Q 001897 303 MKTDVEVRVD------LLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAMRGKT-NVKLWKHALK 375 (998)
Q Consensus 303 ~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~-~~~~w~~~~~ 375 (998)
+.....|+++ +|+++|||+||+++.+.. ..++..+| |+|+||||.++|+.|+.+. +.++|...
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-- 350 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-- 350 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC--
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC--
Confidence 4433345666 899999999999986432 22334444 9999999999999999873 56778653
Q ss_pred HHhhcCCCcccchhhhHHHHHhcccccchhh-HHHHhhhccCCCCCccCHHHHHHHHHHhCCcccccchhHHHHhHhHHh
Q 001897 376 EWQKSVPCIKGIENNVYNSLKWSYDALEGNS-KYCFLYCSLFPEDFSIEESELVRYWLAEGLIDEQENHEDSFNRGISLI 454 (998)
Q Consensus 376 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~l-k~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~ 454 (998)
....+..+|.+||+.||+++ |+||+|||+||+++.|+++.++..|+++|- +.+..++
T Consensus 351 -----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~L 408 (1221)
T 1vt4_I 351 -----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVVV 408 (1221)
T ss_dssp -----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHHH
T ss_pred -----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-----------HHHHHHH
Confidence 13678999999999999999 999999999999999999999999998871 1366789
Q ss_pred hhhhhccccccCCCcCeEEEccchhhHH
Q 001897 455 ENLKDHCLLEDGASEGTVKIHDVVRDVA 482 (998)
Q Consensus 455 ~~L~~~~l~~~~~~~~~~~mHdlv~d~a 482 (998)
++|++++|++..+....|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999999999765567899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-35 Score=388.19 Aligned_cols=310 Identities=22% Similarity=0.285 Sum_probs=243.1
Q ss_pred cccccchHHHHHHHHHhhc--CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC--HHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLD--CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN--LRWVQAQ 229 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~ 229 (998)
...+.||++++++|.++|. +++.++|+|+||||+||||||+++|++.+.. ....|+.++||++++..+ ....+..
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLL-EGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHH-TTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHH-HhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 3457788899999999884 4678999999999999999999999874211 123567788999998544 3445666
Q ss_pred HHHHhcCCcc----hhhhHHHHHHHHHHHHHc-CCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHHhh-c
Q 001897 230 IAERLNLDVK----MEESMQRLGIRLHERLLR-ESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVCMA-M 303 (998)
Q Consensus 230 i~~~l~~~~~----~~~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-~ 303 (998)
++..+..... ...+.+.....++..+.+ ++|+||||||||+..+|..+ ++||+||||||++.++.. +
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhc
Confidence 7777764321 123455666666665543 24999999999998777654 568999999999999854 4
Q ss_pred CCCeEEEccC-CChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCC
Q 001897 304 KTDVEVRVDL-LNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAMRGKTNVKLWKHALKEWQKSVP 382 (998)
Q Consensus 304 ~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~ 382 (998)
.....+++.+ |++++|++||...++.. .+..++.+++|+++|+|+||||.++|++|+.+. ..|...++.+.....
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhh
Confidence 5667899996 99999999999998543 344567799999999999999999999998775 469999988865442
Q ss_pred C-c----ccchhhhHHHHHhcccccchhhHHHHhhhccCCCCCccCHHHHHHHHHHhCCcccccchhHHHHhHhHHhhhh
Q 001897 383 C-I----KGIENNVYNSLKWSYDALEGNSKYCFLYCSLFPEDFSIEESELVRYWLAEGLIDEQENHEDSFNRGISLIENL 457 (998)
Q Consensus 383 ~-~----~~~~~~i~~~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L 457 (998)
. + ....+.+..+|.+||+.||+++|.||+|||+||+++.|+++.++..|.++ .+.+..++++|
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L 418 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEF 418 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHH
Confidence 2 1 11235699999999999999999999999999999999999999999553 23467789999
Q ss_pred hhccccccCCC--cCeEEEccchhhHHHHHHh
Q 001897 458 KDHCLLEDGAS--EGTVKIHDVVRDVAIWIAS 487 (998)
Q Consensus 458 ~~~~l~~~~~~--~~~~~mHdlv~d~a~~i~~ 487 (998)
++++|++.... ..+|+|||+||++++..+.
T Consensus 419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~ 450 (1249)
T 3sfz_A 419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNR 450 (1249)
T ss_dssp HHTTSCEEEESSSSEEEECCHHHHHHHHHHTG
T ss_pred HhccceEEecCCCceEEEecHHHHHHHHhhhh
Confidence 99999985432 2369999999999988765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=2.6e-31 Score=317.91 Aligned_cols=304 Identities=22% Similarity=0.296 Sum_probs=229.2
Q ss_pred ccccchHHHHHHHHHhhc--CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCC-CeEEEEEeCCCCCHHHHHHHH-
Q 001897 155 EHQTTASKTLGKLMKLLD--CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRS-GMVIWATVSKELNLRWVQAQI- 230 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i- 230 (998)
..+.||++++++|.+++. .++.++|+|+||||+||||||++++++... ...+| +.++|++++.. +...+...+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSL--LEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHH--HHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhH--HHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 346678889999998886 356899999999999999999999986321 02457 57999999875 333444433
Q ss_pred --HHHhcCC----cchhhhHHHHHHHHHHHHHcC-CeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHHhhc
Q 001897 231 --AERLNLD----VKMEESMQRLGIRLHERLLRE-SNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVCMAM 303 (998)
Q Consensus 231 --~~~l~~~----~~~~~~~~~~~~~l~~~l~~~-~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~ 303 (998)
+..++.. .....+.+.....+...+.+. +++||||||+|+...+..+ ++|++||||||+..++..+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 4455421 111234455666677666653 5899999999987655432 4589999999999988765
Q ss_pred CCCeEEEc---cCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 001897 304 KTDVEVRV---DLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAMRGKTNVKLWKHALKEWQKS 380 (998)
Q Consensus 304 ~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~ 380 (998)
. ...+++ ++|+.+++++||.+.++.. .....+.+.+|+++|+|+|+|+..+|+.++... ..|...++.+...
T Consensus 274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 274 M-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNK 348 (591)
T ss_dssp C-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSC
T ss_pred C-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHh
Confidence 4 334444 5899999999999998642 222345789999999999999999999998764 3699888888754
Q ss_pred CCC-c----ccchhhhHHHHHhcccccchhhHHHHhhhccCCCCCccCHHHHHHHHHHhCCcccccchhHHHHhHhHHhh
Q 001897 381 VPC-I----KGIENNVYNSLKWSYDALEGNSKYCFLYCSLFPEDFSIEESELVRYWLAEGLIDEQENHEDSFNRGISLIE 455 (998)
Q Consensus 381 ~~~-~----~~~~~~i~~~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~ 455 (998)
... + ......+..++..||+.||++.|.||++||+||+++.|+.+.++..|.++ ...+..+++
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~ 416 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQ 416 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHH
Confidence 321 1 11235789999999999999999999999999999999999999999542 123566799
Q ss_pred hhhhccccccCC--CcCeEEEccchhhHHHHH
Q 001897 456 NLKDHCLLEDGA--SEGTVKIHDVVRDVAIWI 485 (998)
Q Consensus 456 ~L~~~~l~~~~~--~~~~~~mHdlv~d~a~~i 485 (998)
+|++++|++... ....|+||+++|+++...
T Consensus 417 ~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 417 EFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 999999997432 234799999999999876
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=4.3e-29 Score=300.65 Aligned_cols=439 Identities=17% Similarity=0.109 Sum_probs=269.6
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccCC-CCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPD-CKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
.+...+.++..+|. ...++++++++++|.+..++. .+..+++|++|++++| .+..+++..|.++++|++|++++|.+
T Consensus 15 ~~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 15 TYQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EEECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ceEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcc
Confidence 45566777777776 456889999999999987776 5667999999999998 66777666779999999999999999
Q ss_pred CCC-ChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCc--ccChhhhcCcCCcEEeCCCCccccccccc
Q 001897 574 HSL-PLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIR--ELPRGMENLSNLRRLNLSRTHYLKKIQAG 649 (998)
Q Consensus 574 ~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~ 649 (998)
..+ |..++++++|++|++++|......| .++++++|++|++++|.+. .+|..++++++|++|++++|. +..++..
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~ 171 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVN 171 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChh
Confidence 877 7789999999999999988666555 6999999999999999988 578999999999999999987 4444433
Q ss_pred ccCCCCCcc----EEEcccCcccccccCcc--------------------------------------------------
Q 001897 650 IICRLSSLE----ILDMTLSDYHWRVKGQE-------------------------------------------------- 675 (998)
Q Consensus 650 ~l~~l~~L~----~L~l~~~~~~~~~~~~~-------------------------------------------------- 675 (998)
.++.+++|+ .|++++|.+....+...
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~ 251 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccC
Confidence 244443332 44444443321110000
Q ss_pred --------------------cccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCC--CCc
Q 001897 676 --------------------DEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLP--TKH 733 (998)
Q Consensus 676 --------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~ 733 (998)
.........+..+++|+.|+++.+.+.... .+..+++|+.|++..+.+ ..++ .++
T Consensus 252 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~~~l~ 328 (606)
T 3vq2_A 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFPTLDLP 328 (606)
T ss_dssp GGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCCCCCCS
T ss_pred hHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-cccccCCCC
Confidence 000001111344555566666555443322 344455566666655433 1111 334
Q ss_pred cccEEEEecccCchhhHHHhhhcCceeecccccCchh---------------------hhhhhhhcccccCCCCCEEEEe
Q 001897 734 DERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLDQ---------------------MLETLVIDSVGAFASLKSLTIA 792 (998)
Q Consensus 734 ~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~---------------------~~~~~~~~~l~~l~~L~~L~L~ 792 (998)
+|+.|++++|..........+++|++|++++|.-... .+.. .+..+..+++|+.|+++
T Consensus 329 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQ 407 (606)
T ss_dssp SCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECT
T ss_pred ccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECC
Confidence 4555555554322211111234444444444321000 0000 11334445555555555
Q ss_pred CCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCccccc-ccchhHHHhhCCCCCE
Q 001897 793 GSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKY-LLTYGSFILALPNLQE 871 (998)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-l~~~~~~~~~l~~L~~ 871 (998)
+|.+...+. ......+++|++|++++|......|..+. .+++|+.|++++|. ++. ..+ ..+..+++|+.
T Consensus 408 ~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~-l~~~~~~--~~~~~l~~L~~ 477 (606)
T 3vq2_A 408 HSTLKRVTE---FSAFLSLEKLLYLDISYTNTKIDFDGIFL----GLTSLNTLKMAGNS-FKDNTLS--NVFANTTNLTF 477 (606)
T ss_dssp TSEEESTTT---TTTTTTCTTCCEEECTTSCCEECCTTTTT----TCTTCCEEECTTCE-EGGGEEC--SCCTTCTTCCE
T ss_pred CCccCCccC---hhhhhccccCCEEECcCCCCCccchhhhc----CCCCCCEEECCCCc-CCCcchH--HhhccCCCCCE
Confidence 554433221 01233456666666666644433333222 35667777776663 322 111 12446677777
Q ss_pred EEEeccccchhhhccccccCCCCCCCCCccceeecCCCccccccccCCCCCCCccEEEEecCCCCCCCCCCCcccC-Ccc
Q 001897 872 IKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCNLLRELPLTAQNAD-TVK 950 (998)
Q Consensus 872 L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~~lP~~~~~l~-~L~ 950 (998)
|++++|. +..+... ....+++|++|++++|+.....|..+..+++|+.|++++|+ ++.+|..+..++ +|+
T Consensus 478 L~Ls~n~-l~~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 478 LDLSKCQ-LEQISWG-------VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLA 548 (606)
T ss_dssp EECTTSC-CCEECTT-------TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCC
T ss_pred EECCCCc-CCccChh-------hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCc
Confidence 7777663 2222111 12468999999999986555557778889999999999985 889999888886 599
Q ss_pred eEecchhhh
Q 001897 951 EIIGELQWW 959 (998)
Q Consensus 951 ~l~~~~~w~ 959 (998)
.|....+.|
T Consensus 549 ~l~l~~N~~ 557 (606)
T 3vq2_A 549 FFNLTNNSV 557 (606)
T ss_dssp EEECCSCCC
T ss_pred EEEccCCCc
Confidence 998765544
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.9e-28 Score=295.06 Aligned_cols=450 Identities=12% Similarity=0.073 Sum_probs=276.0
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCcccc-CCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKL-PDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l-~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
.+...+.++..+|. ...+.+++|++++|.+..+ |..+..+++|++|++++| .+..++...|.++++|++|++++|.+
T Consensus 16 ~~~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 16 TYNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EEECTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEECCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcc
Confidence 45566667777775 4567899999999999877 456777999999999998 55666666679999999999999999
Q ss_pred CCC-ChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccC-hhhhcCcCCcEEeCCCCcccccccccc
Q 001897 574 HSL-PLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELP-RGMENLSNLRRLNLSRTHYLKKIQAGI 650 (998)
Q Consensus 574 ~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~ 650 (998)
..+ |..++++++|++|++++|......| .++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 172 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKED 172 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhh
Confidence 866 6689999999999999987665545 6999999999999999998763 334449999999999997 55665555
Q ss_pred cCCCCCcc--EEEcccCcccccccCccccc---------------------------------------ccccccccccc
Q 001897 651 ICRLSSLE--ILDMTLSDYHWRVKGQEDEG---------------------------------------QTNFEELGCLE 689 (998)
Q Consensus 651 l~~l~~L~--~L~l~~~~~~~~~~~~~~~~---------------------------------------~~~~~~l~~l~ 689 (998)
++.+++|+ .|++++|.+....+...... ......+..+.
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 88899998 88898887754332111000 00000111111
Q ss_pred --cCceEEEEeecCCCCCCCchhHhcccceeEEeecCC---CCCCCCCccccEEEEecccCchhhHHH--hhhcCceeec
Q 001897 690 --RLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPT---ANSLPTKHDERRVTISGIDLSGEWIGW--LLTNASSLIL 762 (998)
Q Consensus 690 --~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~L 762 (998)
+|+.|+++.+.+.......+..+++|+.|++..+.+ +..+..+++|+.|++++|.+....+.. .+++|++|++
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 456666666666665555667777888888766543 334455667888888888776543332 3677777777
Q ss_pred ccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCC------------------------CCcceee
Q 001897 763 NNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLL------------------------PNLEELH 818 (998)
Q Consensus 763 ~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l------------------------~~L~~L~ 818 (998)
++|...... ....+..+++|+.|++++|.+..... .+.....+ ++|++|+
T Consensus 333 ~~n~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 333 KGNTKRLEL----GTGCLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSCSSCCBC----CSSTTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCCCccccc----chhhhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 776432111 12224555666666666665543320 01122334 4455555
Q ss_pred ccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEecccc----------------chh
Q 001897 819 LHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDN----------------LVE 882 (998)
Q Consensus 819 L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~----------------L~~ 882 (998)
+++|......+... -..+++|+.|++++|. +...++ ..+..+++|++|++++|.- |+.
T Consensus 407 l~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 407 LAFTRLKVKDAQSP---FQNLHLLKVLNLSHSL-LDISSE--QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp CTTCCEECCTTCCT---TTTCTTCCEEECTTCC-CBTTCT--TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred CCCCcCCCcccchh---hhCcccCCEEECCCCc-cCCcCH--HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 54443222211110 0135666666666653 332222 1244566777777766531 111
Q ss_pred hhccccccCCCC---CCCCCccceeecCCCccccccccCCCCCCCccEEEEecCCCCCCCCCCCcccCCcceEecchhhh
Q 001897 883 LFCYYSELNFTP---ETVVPNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCNLLRELPLTAQNADTVKEIIGELQWW 959 (998)
Q Consensus 883 l~~~~~~~~~~~---~~~~p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~w~ 959 (998)
+....+...... ...+++|++|+++++......+..+..+++| .|++++|.-....|..+..+++|+.|....+.|
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 111112111111 1345666666666654434444455566666 677766643333344566677788887665544
Q ss_pred c
Q 001897 960 N 960 (998)
Q Consensus 960 ~ 960 (998)
.
T Consensus 560 ~ 560 (606)
T 3t6q_A 560 D 560 (606)
T ss_dssp E
T ss_pred c
Confidence 3
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=5.3e-29 Score=306.56 Aligned_cols=153 Identities=21% Similarity=0.343 Sum_probs=71.7
Q ss_pred cccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCC-CChhhhcccCCceEe
Q 001897 512 VNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHS-LPLSLLQLHNCRALL 590 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~l~~L~~L~ 590 (998)
..++++|++++|.+...+..+..+++|++|++++|.....+|. .+..+++|++|++++|.+.. +|.. .+++|++|+
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~ 275 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence 3445555555555443222244455555555555522222222 23455555555555554442 2221 445555555
Q ss_pred ecCCCCCCCCc-cccCC-CCCCeeeecCCCCc-ccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcc
Q 001897 591 LRDCFYLEDLP-ALGGL-TKLQDLDLSATSIR-ELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 591 L~~~~~~~~lp-~i~~l-~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
+++|.....+| .+..+ ++|++|++++|.+. .+|..++++++|++|++++|.....+|...++++++|++|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 55554443444 23332 55555555555544 44555555555555555555433344443345555555555555544
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=290.79 Aligned_cols=438 Identities=17% Similarity=0.119 Sum_probs=273.5
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccCC-CCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPD-CKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
.+...+.++..+|. ...+.+++|++++|.+..++. .+..+++|++|++++| .+..++...|.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 11 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EEECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcC
Confidence 45566667777775 456789999999999987765 5667999999999999 67778777789999999999999999
Q ss_pred CCCC-hhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcc--cChhhhcCcCCcEEeCCCCccccccccc
Q 001897 574 HSLP-LSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRE--LPRGMENLSNLRRLNLSRTHYLKKIQAG 649 (998)
Q Consensus 574 ~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~ 649 (998)
..+| ..++.+++|++|++++|......+ .++++++|++|++++|.+.. +|..++++++|++|++++|. +..++..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~ 167 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCT 167 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHH
Confidence 8776 579999999999999987554444 59999999999999999885 78999999999999999997 5555544
Q ss_pred ccCCCCCc----cEEEcccCcccccccCccccc--------------------------------------------ccc
Q 001897 650 IICRLSSL----EILDMTLSDYHWRVKGQEDEG--------------------------------------------QTN 681 (998)
Q Consensus 650 ~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~--------------------------------------------~~~ 681 (998)
.++.+++| +.|++++|.+....+...... ...
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 47777777 788888876643221100000 000
Q ss_pred ccccccccc--CceEEEEee-cCCCCCCCchhHhcccceeEEeecCC---CCCCCCCccccEEEEecccCc---------
Q 001897 682 FEELGCLER--LLVLSIRLE-NIPSQGTEDLTWIGRLRSFQFFIGPT---ANSLPTKHDERRVTISGIDLS--------- 746 (998)
Q Consensus 682 ~~~l~~l~~--L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~~~~L~~L~l~~~~l~--------- 746 (998)
...+..+.+ ++.+.+..+ .+....+..+..+++|+.|++..+.+ +..+... +++.|++++|.+.
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~ 326 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKS 326 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSS
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccc
Confidence 000001111 111111111 11122223344455555555543322 2222223 4455555544433
Q ss_pred ------------hhhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCc
Q 001897 747 ------------GEWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNL 814 (998)
Q Consensus 747 ------------~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L 814 (998)
...+...+++|+.|++++|.-.... ..+..+..+++|+.|++++|.+...+. ....+++|
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~l~~L 398 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG---CCSQSDFGTTSLKYLDLSFNGVITMSS-----NFLGLEQL 398 (570)
T ss_dssp CCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEE---EEEHHHHTCSCCCEEECCSCSEEEEEE-----EEETCTTC
T ss_pred cCEEeCcCCccccccccccCCCCCEEeCcCCccCccc---cccccccccCccCEEECCCCccccccc-----cccccCCC
Confidence 2222223455555555554311000 001223455666666666665544332 13446777
Q ss_pred ceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccch-hhhccccccCCC
Q 001897 815 EELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLV-ELFCYYSELNFT 893 (998)
Q Consensus 815 ~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~-~l~~~~~~~~~~ 893 (998)
++|++++|......+... -..+++|+.|++++|. +....+ ..+..+++|+.|++++|.-.. .++ .
T Consensus 399 ~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~p--------~ 464 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTH-TRVAFN--GIFNGLSSLEVLKMAGNSFQENFLP--------D 464 (570)
T ss_dssp CEEECTTSEEESCTTSCT---TTTCTTCCEEECTTSC-CEECCT--TTTTTCTTCCEEECTTCEEGGGEEC--------S
T ss_pred CEEEccCCccccccchhh---hhcCCCCCEEeCcCCc-ccccch--hhhhcCCcCcEEECcCCcCccccch--------h
Confidence 777777764333222110 1136778888887774 333222 134567888888888775221 121 1
Q ss_pred CCCCCCccceeecCCCccccccccCCCCCCCccEEEEecCCCCCCCC-CCCcccCCcceEecchhhh
Q 001897 894 PETVVPNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCNLLRELP-LTAQNADTVKEIIGELQWW 959 (998)
Q Consensus 894 ~~~~~p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~~lP-~~~~~l~~L~~l~~~~~w~ 959 (998)
....+++|++|++++|......+..+..+++|++|++++| .++.+| ..+.++++|+.|....+.|
T Consensus 465 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 1246899999999998654444667888999999999998 466665 5578899999998765544
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=5.1e-28 Score=291.20 Aligned_cols=411 Identities=19% Similarity=0.132 Sum_probs=233.0
Q ss_pred EEeecCCCccccchh--hhcccceEEEeecCCcccc-CCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCC
Q 001897 495 SLVRSGAGLTEVSET--ELVNSLKRVSFMNNSITKL-PDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGT 571 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~--~~~~~l~~l~l~~~~~~~l-~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~ 571 (998)
.+..++..+..++.. ....++++|++++|.+..+ |..+..+++|++|++++| .+..+++..|.++++|++|++++|
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTS
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeecccc
Confidence 444455555544322 2356788888888887755 556677888888888888 455555555688888888888888
Q ss_pred CCCCC-ChhhhcccCCceEeecCCCCCC-CCccccCCCCCCeeeecCCCCcccC-hhhhcCcCCc--EEeCCCCccc---
Q 001897 572 RIHSL-PLSLLQLHNCRALLLRDCFYLE-DLPALGGLTKLQDLDLSATSIRELP-RGMENLSNLR--RLNLSRTHYL--- 643 (998)
Q Consensus 572 ~~~~l-p~~i~~l~~L~~L~L~~~~~~~-~lp~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~--~L~l~~~~~l--- 643 (998)
.+..+ |..++++++|++|++++|.... ..|.+..+++|++|++++|.++.++ ..++.+++|+ .|++++|...
T Consensus 116 ~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccC
Confidence 88876 4578888888888888877655 3355556888888888888887664 4467777777 6666665421
Q ss_pred -----------------------------------------------------------------------ccccccccC
Q 001897 644 -----------------------------------------------------------------------KKIQAGIIC 652 (998)
Q Consensus 644 -----------------------------------------------------------------------~~~p~~~l~ 652 (998)
..++...++
T Consensus 196 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~ 275 (606)
T 3t6q_A 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275 (606)
T ss_dssp TTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT
T ss_pred hhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhc
Confidence 112222244
Q ss_pred CCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCC-----C
Q 001897 653 RLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTA-----N 727 (998)
Q Consensus 653 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~ 727 (998)
++++|++|++++|.+. .....+..+++|+.|+++.+.+....+..+..+++|+.|++..+.+. .
T Consensus 276 ~l~~L~~L~l~~n~l~-----------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-----------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp TCTTCSEEECTTSCCS-----------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred cccCCCEEeccCCccC-----------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 5556666666655543 11233555666666666655555444445555666666666554332 1
Q ss_pred CCCCCccccEEEEecccCchhh--HH--HhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCC-
Q 001897 728 SLPTKHDERRVTISGIDLSGEW--IG--WLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIG- 802 (998)
Q Consensus 728 ~~~~~~~L~~L~l~~~~l~~~~--~~--~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~- 802 (998)
.+..+++|+.|++++|.+.... +. ..+++|++|++++|.-. ...+..+..+++|+.|++++|.+......
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-----SLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-----EECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-----cCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 1344556666666666554332 11 12455666666554321 11222334444555555555443322110
Q ss_pred --------------------CCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHH
Q 001897 803 --------------------GCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSF 862 (998)
Q Consensus 803 --------------------~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 862 (998)
..+.....+++|++|++++|............ -..+++|+.|++++| +++.+++. .
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~--~ 495 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS-LQTLGRLEILVLSFC-DLSSIDQH--A 495 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG-GGGCTTCCEEECTTS-CCCEECTT--T
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh-hccCCCccEEECCCC-ccCccChh--h
Confidence 00122233555555555555332211100000 013556666666665 34433321 2
Q ss_pred HhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCccccccccCCCCCCCccEEEEecCCC
Q 001897 863 ILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCNL 935 (998)
Q Consensus 863 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~ 935 (998)
+..+++|+.|++++|. +...... ....+++| +|+++++......+..+..+++|+.|++++||-
T Consensus 496 ~~~l~~L~~L~Ls~N~-l~~~~~~-------~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNR-LTSSSIE-------ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp TTTCTTCCEEECCSSC-CCGGGGG-------GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred hccccCCCEEECCCCc-cCcCChh-------HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 4456666666666653 2222111 11357788 999999754444444467789999999999873
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3e-28 Score=299.83 Aligned_cols=342 Identities=18% Similarity=0.203 Sum_probs=235.3
Q ss_pred cccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC-CCChhhhcccCCceEe
Q 001897 512 VNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH-SLPLSLLQLHNCRALL 590 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~ 590 (998)
.++++++++++|.+..... ...+++|++|++++|.....+|. +..+++|++|++++|.+. .+|..++.+++|++|+
T Consensus 177 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp CTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred CCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 4678899999888775433 26689999999999955555554 689999999999999988 6678899999999999
Q ss_pred ecCCCCCCCCccccCCCCCCeeeecCCCCc-ccChhhhcC-cCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 591 LRDCFYLEDLPALGGLTKLQDLDLSATSIR-ELPRGMENL-SNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 591 L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
+++|.....+|.. .+++|++|++++|.+. .+|..+..+ ++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 254 Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 254 ISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFS 331 (768)
T ss_dssp CCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEE
T ss_pred CCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCccc
Confidence 9999877777755 8999999999999888 889888775 99999999999855566666 899999999999999874
Q ss_pred ccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhc-ccceeEEeecCCC----CCCCC--CccccEEEEe
Q 001897 669 WRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIG-RLRSFQFFIGPTA----NSLPT--KHDERRVTIS 741 (998)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~----~~~~~--~~~L~~L~l~ 741 (998)
..++ ...+..+++|+.|+++.+.+....+..+..+. +|+.|++..+.+. ..... ..+++.|+++
T Consensus 332 ~~ip---------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 332 GELP---------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp EECC---------HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred CcCC---------HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 3222 12377888899999887777655666677676 7888877655332 22211 4456677777
Q ss_pred cccCchhhHHH--hhhcCceeecccccCchhh-------------------hhhhhhcccccCCCCCEEEEeCCCCcccc
Q 001897 742 GIDLSGEWIGW--LLTNASSLILNNCWGLDQM-------------------LETLVIDSVGAFASLKSLTIAGSRSSLRP 800 (998)
Q Consensus 742 ~~~l~~~~~~~--~~~~L~~L~L~~c~~l~~~-------------------~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 800 (998)
+|.+++..+.+ .+++|+.|++++|.-.... +....+..+..+++|+.|++++|.+....
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 66655443333 2456666666654321100 00112223344455555555555443211
Q ss_pred CCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccc
Q 001897 801 IGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCD 878 (998)
Q Consensus 801 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~ 878 (998)
+.....+++|++|+|++|.....+|..+. .+++|+.|++++|.-...+|. .+..+++|+.|++++|.
T Consensus 483 ----p~~l~~l~~L~~L~L~~N~l~~~~p~~~~----~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 483 ----PSGLSNCTNLNWISLSNNRLTGEIPKWIG----RLENLAILKLSNNSFSGNIPA---ELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp ----CGGGGGCTTCCEEECCSSCCCSCCCGGGG----GCTTCCEEECCSSCCEEECCG---GGGGCTTCCEEECCSSE
T ss_pred ----CHHHhcCCCCCEEEccCCccCCcCChHHh----cCCCCCEEECCCCcccCcCCH---HHcCCCCCCEEECCCCc
Confidence 23344567777777777765556655443 377888888888754334432 35678888888888764
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=296.00 Aligned_cols=171 Identities=20% Similarity=0.277 Sum_probs=140.2
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCcccc-CCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKL-PDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l-~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
.....+.++..+|. .++++++|++++|.+..+ |..+..+++|++|++++|.....++...|.++++|++|+|++|.+
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 45566778888887 778999999999999876 556778999999999999777778667789999999999999999
Q ss_pred CCC-ChhhhcccCCceEeecCCCCCCCCc-c--ccCCCCCCeeeecCCCCccc--ChhhhcCcCCcEEeCCCCccccccc
Q 001897 574 HSL-PLSLLQLHNCRALLLRDCFYLEDLP-A--LGGLTKLQDLDLSATSIREL--PRGMENLSNLRRLNLSRTHYLKKIQ 647 (998)
Q Consensus 574 ~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~--i~~l~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p 647 (998)
..+ |..++++++|++|+|++|......| . ++++++|++|++++|.+..+ +..++++++|++|++++|......+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 976 7789999999999999998776555 3 99999999999999999865 3579999999999999987433333
Q ss_pred ccccCCC--CCccEEEcccCccc
Q 001897 648 AGIICRL--SSLEILDMTLSDYH 668 (998)
Q Consensus 648 ~~~l~~l--~~L~~L~l~~~~~~ 668 (998)
.. +..+ ++|+.|++++|.+.
T Consensus 166 ~~-l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 166 HE-LEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp GG-GHHHHHCSSCCCEECCSBSC
T ss_pred HH-cccccCCccceEECCCCccc
Confidence 33 5555 66666666666553
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.1e-27 Score=284.72 Aligned_cols=433 Identities=16% Similarity=0.171 Sum_probs=286.0
Q ss_pred ecCCCccccchhhhcccceEEEeecCCccccC-CCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC
Q 001897 498 RSGAGLTEVSETELVNSLKRVSFMNNSITKLP-DCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL 576 (998)
Q Consensus 498 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l 576 (998)
..+..+..+|. ...+.++++++++|.+..++ ..+..+++|++|++++| .+..++...|.++++|++|++++|.+..+
T Consensus 12 ~~~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 12 GRSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp CTTSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred CCCCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCcc
Confidence 34455666665 34578889999998888664 45677889999999888 56666666678889999999999988887
Q ss_pred Chh-hhcccCCceEeecCCCCCC-CCc-cccCCCCCCeeeecCCC-CcccC-hhhhcCcCCcEEeCCCCccccccccccc
Q 001897 577 PLS-LLQLHNCRALLLRDCFYLE-DLP-ALGGLTKLQDLDLSATS-IRELP-RGMENLSNLRRLNLSRTHYLKKIQAGII 651 (998)
Q Consensus 577 p~~-i~~l~~L~~L~L~~~~~~~-~lp-~i~~l~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~l 651 (998)
|.. ++++++|++|++++|.... ..| .++++++|++|++++|. +..+| ..+..+++|++|++++|......|.. +
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l 168 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-L 168 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-T
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-h
Confidence 765 8889999999999887554 234 68888999999998886 66776 46888889999999888744445555 8
Q ss_pred CCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCC---CCchhHhcccceeEEeecCCC--
Q 001897 652 CRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQG---TEDLTWIGRLRSFQFFIGPTA-- 726 (998)
Q Consensus 652 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-- 726 (998)
+++++|++|++..|...... ...+..+++|+.|+++.+.+.... ......+++|+.|.+..+.+.
T Consensus 169 ~~l~~L~~L~l~~n~~~~~~----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESAFLL----------EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp TTCSEEEEEEEECSBSTTHH----------HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred hccccCceEecccCcccccc----------hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 88889999988877652110 012345788888988877766532 111223456666665433211
Q ss_pred ------------------------------------CCCCCCccccEEEEecccCchhh-------HHHhhhcCceeecc
Q 001897 727 ------------------------------------NSLPTKHDERRVTISGIDLSGEW-------IGWLLTNASSLILN 763 (998)
Q Consensus 727 ------------------------------------~~~~~~~~L~~L~l~~~~l~~~~-------~~~~~~~L~~L~L~ 763 (998)
..+....+++.|.+.++.+.... .....++|+.|+++
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~ 318 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence 01123345555555555443211 11234667777777
Q ss_pred cccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCcc
Q 001897 764 NCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLR 843 (998)
Q Consensus 764 ~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~ 843 (998)
+|.- .... ...+..+++|+.|++++|.+....... ......+++|++|+|++| .+..++..... ...+++|+
T Consensus 319 ~n~l-~~ip----~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~~~l~~L~ 390 (549)
T 2z81_A 319 NSKV-FLVP----CSFSQHLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQN-HLRSMQKTGEI-LLTLKNLT 390 (549)
T ss_dssp SSCC-CCCC----HHHHHHCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTS-CCCCHHHHHHH-GGGCTTCC
T ss_pred cCcc-ccCC----HHHHhcCccccEEEccCCccccccccc-hhhhhccccCcEEEccCC-cccccccchhh-hhcCCCCC
Confidence 6532 1111 111245788999999988876432100 122456789999999988 44444321000 11478899
Q ss_pred EEEeecCcccccccchhHHHhhCCCCCEEEEeccc----------cchhhhccccccCCCCCCCCCccceeecCCCcccc
Q 001897 844 LMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCD----------NLVELFCYYSELNFTPETVVPNLRNLELKNLPKLR 913 (998)
Q Consensus 844 ~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~----------~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 913 (998)
.|++++| +++.+|. .+..+++|++|++++|. +|+.+....+...... ..+++|++|+++++ .++
T Consensus 391 ~L~Ls~N-~l~~lp~---~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~-~~l~~L~~L~Ls~N-~l~ 464 (549)
T 2z81_A 391 SLDISRN-TFHPMPD---SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS-LFLPRLQELYISRN-KLK 464 (549)
T ss_dssp EEECTTC-CCCCCCS---CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSS-CCS
T ss_pred EEECCCC-CCccCCh---hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc-ccCChhcEEECCCC-ccC
Confidence 9999887 6666654 23467888888888764 3333333333332222 46889999999997 567
Q ss_pred ccccCCCCCCCccEEEEecCCCCCCCC-CCCcccCCcceEecchhhh
Q 001897 914 TICRQKESWQCLEQVKVIKCNLLRELP-LTAQNADTVKEIIGELQWW 959 (998)
Q Consensus 914 ~i~~~~~~l~~L~~L~i~~C~~L~~lP-~~~~~l~~L~~l~~~~~w~ 959 (998)
.+|. ...+++|+.|++++| .++.+| ..+..+++|+.|....+-|
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred cCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 7776 456899999999997 466665 4588899999998765543
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.1e-27 Score=288.18 Aligned_cols=422 Identities=18% Similarity=0.135 Sum_probs=260.9
Q ss_pred ceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC-ChhhhcccCCceEeecC
Q 001897 515 LKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL-PLSLLQLHNCRALLLRD 593 (998)
Q Consensus 515 l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~ 593 (998)
-++++.+++.+..+|..+. +++++|++++| .+..++...|.++++|++|++++|.+..+ |..++++++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP--SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcccCCCCCC--CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 3578888899999998664 88999999999 67777777789999999999999999987 55789999999999999
Q ss_pred CCCCCCCc-cccCCCCCCeeeecCCCCcccC-hhhhcCcCCcEEeCCCCcccc-cccccccCCCCCccEEEcccCccccc
Q 001897 594 CFYLEDLP-ALGGLTKLQDLDLSATSIRELP-RGMENLSNLRRLNLSRTHYLK-KIQAGIICRLSSLEILDMTLSDYHWR 670 (998)
Q Consensus 594 ~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~-~~p~~~l~~l~~L~~L~l~~~~~~~~ 670 (998)
|......| .++++++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+...
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence 98776667 6999999999999999999887 669999999999999998433 46766 89999999999999987543
Q ss_pred ccCcccc-----------------cccccccccccccCceEEEEeecCCC-CC---------------------------
Q 001897 671 VKGQEDE-----------------GQTNFEELGCLERLLVLSIRLENIPS-QG--------------------------- 705 (998)
Q Consensus 671 ~~~~~~~-----------------~~~~~~~l~~l~~L~~L~l~~~~~~~-~~--------------------------- 705 (998)
.+..... -...........+|+.|+++.+.+.. ..
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 2210000 00001111122266777776554320 00
Q ss_pred -----------------------------CCchhHhcccceeEEeecCCCC--CCCCCccccEEEEecccCchhhHHHhh
Q 001897 706 -----------------------------TEDLTWIGRLRSFQFFIGPTAN--SLPTKHDERRVTISGIDLSGEWIGWLL 754 (998)
Q Consensus 706 -----------------------------~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~ 754 (998)
...+..+++|+.+++..+.+.. .++.+.+++.|++++|.+. ..+.+.+
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~~~l 327 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTLDL 327 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCCCCCC
T ss_pred ccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccccCCC
Confidence 0012334555555555443311 3445556777777777663 2233356
Q ss_pred hcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccccccccccccc
Q 001897 755 TNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGY 834 (998)
Q Consensus 755 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 834 (998)
++|++|++++|..... ..+..+++|+.|++++|.+..... .+.....+++|++|++++|. +..+|..+.
T Consensus 328 ~~L~~L~l~~n~~~~~-------~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~- 396 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSIS-------FKKVALPSLSYLDLSRNALSFSGC--CSYSDLGTNSLRHLDLSFNG-AIIMSANFM- 396 (606)
T ss_dssp SSCCEEEEESCSSCEE-------CCCCCCTTCCEEECCSSCEEEEEE--CCHHHHCCSCCCEEECCSCS-EEEECCCCT-
T ss_pred CccceeeccCCcCccc-------hhhccCCCCCEEECcCCccCCCcc--hhhhhccCCcccEeECCCCc-cccchhhcc-
Confidence 6777777777643221 134556666777776665543210 01122334555555555553 222332111
Q ss_pred ccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEecccc-------------chhhhccccccCC--C--CCCC
Q 001897 835 LGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDN-------------LVELFCYYSELNF--T--PETV 897 (998)
Q Consensus 835 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~-------------L~~l~~~~~~~~~--~--~~~~ 897 (998)
.+++|+.|++++|. +...++.. .+..+++|+.|++++|.- |+.+....+.... . ....
T Consensus 397 ---~l~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 397 ---GLEELQHLDFQHST-LKRVTEFS-AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp ---TCTTCCEEECTTSE-EESTTTTT-TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred ---CCCCCCeeECCCCc-cCCccChh-hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 24455555554442 22221111 223444555555444321 1111111111110 0 1245
Q ss_pred CCccceeecCCCccccccccCCCCCCCccEEEEecCCCCCCCCCCCcccCCcceEecchh
Q 001897 898 VPNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCNLLRELPLTAQNADTVKEIIGELQ 957 (998)
Q Consensus 898 ~p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~ 957 (998)
+++|++|++++|......+..+..+++|++|++++|+-....|..+..+++|+.|+...+
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 688888888887544444555777888888888888544444777888888888876543
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=6.8e-28 Score=293.65 Aligned_cols=347 Identities=16% Similarity=0.162 Sum_probs=228.6
Q ss_pred CChhhhcCCCCccEEEcCCCCCCC------------------CChhhh--cccCCceEeecCCCCCCCCc-cccCCCCCC
Q 001897 552 VPEKFLDGFPALRVLNLSGTRIHS------------------LPLSLL--QLHNCRALLLRDCFYLEDLP-ALGGLTKLQ 610 (998)
Q Consensus 552 l~~~~~~~l~~Lr~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~ 610 (998)
+|.. +.++++|++|+|++|.+.. +|..++ ++++|++|+|++|.....+| .++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 6655 5889999999999999987 899887 99999999999998888888 699999999
Q ss_pred eeeecCCC-Ccc--cChhhhcCc-------CCcEEeCCCCcccccccc--cccCCCCCccEEEcccCcccccccCccccc
Q 001897 611 DLDLSATS-IRE--LPRGMENLS-------NLRRLNLSRTHYLKKIQA--GIICRLSSLEILDMTLSDYHWRVKGQEDEG 678 (998)
Q Consensus 611 ~L~l~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~~l~~~p~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 678 (998)
+|++++|+ ++. +|..++++. +|++|++++|. +..+|. . ++++++|+.|++++|.+. .
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~-l~~L~~L~~L~Ls~N~l~-~-------- 587 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS-LQKMVKLGLLDCVHNKVR-H-------- 587 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH-HTTCTTCCEEECTTSCCC-B--------
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhh-hhcCCCCCEEECCCCCcc-c--------
Confidence 99999997 874 888887776 99999999998 558887 5 899999999999998774 1
Q ss_pred ccccccccccccCceEEEEeecCCCCCCCchhHhcc-cceeEEeecCCC---CCCCCC--ccccEEEEecccCchhhHHH
Q 001897 679 QTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGR-LRSFQFFIGPTA---NSLPTK--HDERRVTISGIDLSGEWIGW 752 (998)
Q Consensus 679 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~---~~~~~~--~~L~~L~l~~~~l~~~~~~~ 752 (998)
+..++.+++|+.|+++.+.+. ..+..+..+++ |+.|++..+.+. ..+... .+|+.|++++|.+++..+..
T Consensus 588 ---lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 588 ---LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp ---CCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred ---chhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 226788889999999888777 44455666777 888888776554 222222 23788888888776533211
Q ss_pred -------hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCC---CCCCCCcceeecccc
Q 001897 753 -------LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAH---DDLLPNLEELHLHDL 822 (998)
Q Consensus 753 -------~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~---~~~l~~L~~L~L~~~ 822 (998)
.+++|+.|++++|.-. .+ ....+..+++|+.|+|++|.+...+...+... ...+++|+.|+|++|
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~-~l----p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQ-KF----PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCC-SC----CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred hhhhccccCCCcCEEEccCCcCC-cc----CHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC
Confidence 1246777777765432 11 11112356777777777777664443222111 123447777777777
Q ss_pred ccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhcccccc-CCCC--CCCCC
Q 001897 823 AYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSEL-NFTP--ETVVP 899 (998)
Q Consensus 823 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~-~~~~--~~~~p 899 (998)
.+..+|..... ..+++|+.|++++| +++.+|. .+..+++|+.|+|+++..+. .+.. ...+ ...++
T Consensus 739 -~L~~lp~~l~~--~~l~~L~~L~Ls~N-~L~~lp~---~l~~L~~L~~L~Ls~N~~ls-----~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 739 -KLTSLSDDFRA--TTLPYLSNMDVSYN-CFSSFPT---QPLNSSQLKAFGIRHQRDAE-----GNRILRQWPTGITTCP 806 (876)
T ss_dssp -CCCCCCGGGST--TTCTTCCEEECCSS-CCSSCCC---GGGGCTTCCEEECCCCBCTT-----CCBCCCCCCTTGGGCS
T ss_pred -CCccchHHhhh--ccCCCcCEEEeCCC-CCCccch---hhhcCCCCCEEECCCCCCcc-----cccccccChHHHhcCC
Confidence 44455543320 13667777777765 4444432 23467777777776644111 0100 0001 13456
Q ss_pred ccceeecCCCccccccccCCCCCCCccEEEEecCC
Q 001897 900 NLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCN 934 (998)
Q Consensus 900 ~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~ 934 (998)
+|++|+|++|+. ..+|..+. ++|+.|++++|+
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 666666666543 55655432 566666666665
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=9.9e-27 Score=283.91 Aligned_cols=441 Identities=16% Similarity=0.129 Sum_probs=286.7
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccCCC-CCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDC-KVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
.+...+..+..+|. ....++++|++++|.+..++.. +..+++|++|++++| .+..++...|.++++|++|++++|.+
T Consensus 8 ~~~cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 8 VADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp EEECCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred eeECCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCcc
Confidence 34556666777775 3457899999999999888764 667899999999998 56667666778999999999999999
Q ss_pred CCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCccc-ChhhhcCcCCcEEeCCCCcccccccccc
Q 001897 574 HSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIREL-PRGMENLSNLRRLNLSRTHYLKKIQAGI 650 (998)
Q Consensus 574 ~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~ 650 (998)
..+|. .++++++|++|++++|......| .++++++|++|++++|.+... |..++++++|++|++++|. +..++...
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 164 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEE 164 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHH
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHH
Confidence 99987 58999999999999987665555 599999999999999988865 4568899999999999987 55555433
Q ss_pred cC--CCCCccEEEcccCcccccccCccccccccccccc---------------------ccccCceEEEEeecCCCCCCC
Q 001897 651 IC--RLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELG---------------------CLERLLVLSIRLENIPSQGTE 707 (998)
Q Consensus 651 l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~---------------------~l~~L~~L~l~~~~~~~~~~~ 707 (998)
+. .+++|+.|++++|.+....+.... .+..+. ..++|+.|+++.+.+....+.
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFH----AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGG----GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred hhccccccccEEECCCCcccccChhhhh----hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 33 568999999999876532221000 000000 125677777766666555555
Q ss_pred chhHhcc--cceeEEeecCCC----CCCCCCccccEEEEecccCchhhHHH--hhhcCceeecccccCchhh----hhhh
Q 001897 708 DLTWIGR--LRSFQFFIGPTA----NSLPTKHDERRVTISGIDLSGEWIGW--LLTNASSLILNNCWGLDQM----LETL 775 (998)
Q Consensus 708 ~l~~l~~--L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~L~~c~~l~~~----~~~~ 775 (998)
.+..+.. |+.|++..+.+. ..+..+++|+.|++++|.+....+.. .+++|+.|+++++...... +..+
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 5555554 888888766542 33556678888888888876554433 3678888888764321110 0111
Q ss_pred hhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccc-cccccccccccc------------------
Q 001897 776 VIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAY-LGNISGLVGYLG------------------ 836 (998)
Q Consensus 776 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-l~~~~~~~~~~~------------------ 836 (998)
....+..+++|+.|++++|.+...+. .....+++|++|++++|.. ...++... ...
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~~~~~~l~~~~-f~~~~~~~L~~L~L~~n~l~~ 395 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKS----NMFTGLINLKYLSLSNSFTSLRTLTNET-FVSLAHSPLHILNLTKNKISK 395 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCT----TTTTTCTTCCEEECTTCBSCCCEECTTT-TGGGTTSCCCEEECTTSCCCE
T ss_pred ChhhcccCCCCCEEECCCCccCCCCh----hHhccccCCcEEECCCCchhhhhcchhh-hcccccCcCceEECCCCCCCe
Confidence 11245667888888888887654432 2344567777777776642 22221110 000
Q ss_pred ------ccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCc
Q 001897 837 ------LRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLP 910 (998)
Q Consensus 837 ------~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~ 910 (998)
..+++|+.|+++++.--..++.. .+..+++|++|++++|. +..+.. .....+|+|+.|+++++.
T Consensus 396 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQ--EWRGLENIFEIYLSYNK-YLQLTR-------NSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCEEECCSG--GGTTCTTCCEEECCSCS-EEECCT-------TTTTTCTTCCEEECTTSC
T ss_pred EChhhhhCCCCCCEEeCCCCcCccccCcc--cccCcccccEEecCCCC-cceeCh-------hhhhcCcccccchhcccc
Confidence 02344444444443221122211 13344555555555443 111110 111357888888888864
Q ss_pred c--ccccccCCCCCCCccEEEEecCCCCCCCCC-CCcccCCcceEecchhh
Q 001897 911 K--LRTICRQKESWQCLEQVKVIKCNLLRELPL-TAQNADTVKEIIGELQW 958 (998)
Q Consensus 911 ~--L~~i~~~~~~l~~L~~L~i~~C~~L~~lP~-~~~~l~~L~~l~~~~~w 958 (998)
. +..+|..+..+++|+.|++++|. ++.+|. .+..+++|+.|....+-
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCC
Confidence 2 34566777889999999999874 666764 47888999999876543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.1e-27 Score=287.81 Aligned_cols=181 Identities=14% Similarity=0.237 Sum_probs=138.0
Q ss_pred CChhhhcCCCCccEEEcCCCCCCC------------------CChhhh--cccCCceEeecCCCCCCCCc-cccCCCCCC
Q 001897 552 VPEKFLDGFPALRVLNLSGTRIHS------------------LPLSLL--QLHNCRALLLRDCFYLEDLP-ALGGLTKLQ 610 (998)
Q Consensus 552 l~~~~~~~l~~Lr~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~ 610 (998)
+|.. ++++++|++|++++|.+.. +|..++ ++++|++|++++|.....+| .++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 5654 5889999999999999987 999988 99999999999998888888 699999999
Q ss_pred eeeecCCC-Cc--ccChhhhcC------cCCcEEeCCCCcccccccc--cccCCCCCccEEEcccCcccccccCcccccc
Q 001897 611 DLDLSATS-IR--ELPRGMENL------SNLRRLNLSRTHYLKKIQA--GIICRLSSLEILDMTLSDYHWRVKGQEDEGQ 679 (998)
Q Consensus 611 ~L~l~~~~-l~--~lp~~i~~L------~~L~~L~l~~~~~l~~~p~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 679 (998)
+|++++|. ++ .+|..++++ ++|++|++++|. +..+|. . ++++++|++|++++|.+...+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~i-------- 346 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS-LQKMKKLGMLECLYNQLEGKL-------- 346 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH-HTTCTTCCEEECCSCCCEEEC--------
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh-hccCCCCCEEeCcCCcCccch--------
Confidence 99999997 88 489888887 899999999998 558887 5 899999999999998774222
Q ss_pred cccccccccccCceEEEEeecCCCCCCCchhHhcc-cceeEEeecCCCC---CCCC--CccccEEEEecccCch
Q 001897 680 TNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGR-LRSFQFFIGPTAN---SLPT--KHDERRVTISGIDLSG 747 (998)
Q Consensus 680 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~---~~~~--~~~L~~L~l~~~~l~~ 747 (998)
..++.+++|+.|+++.+.+. ..+..+..+++ |+.|++..+.+.. .+.. +.+|+.|++++|.+++
T Consensus 347 ---p~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 347 ---PAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp ---CCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred ---hhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC
Confidence 25777888999988776655 33334555666 7777776654431 1111 1256666666665544
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=4.1e-26 Score=278.49 Aligned_cols=373 Identities=18% Similarity=0.155 Sum_probs=215.8
Q ss_pred ccEEeecCCCccccchh--hhcccceEEEeecCCccccC-CCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcC
Q 001897 493 CKSLVRSGAGLTEVSET--ELVNSLKRVSFMNNSITKLP-DCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLS 569 (998)
Q Consensus 493 ~~~l~~~~~~~~~~~~~--~~~~~l~~l~l~~~~~~~l~-~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~ 569 (998)
...+...+..+..++.. ...+++++|++++|.+..++ ..+..+++|++|++++| .+..+|...|.++++|++|+++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECC
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECC
Confidence 34455556556655542 33578899999988887664 34556889999999888 6777887777889999999999
Q ss_pred CCCCCCCC-hhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-h--hcCcCCcEEeCCCCcccc
Q 001897 570 GTRIHSLP-LSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-M--ENLSNLRRLNLSRTHYLK 644 (998)
Q Consensus 570 ~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i--~~L~~L~~L~l~~~~~l~ 644 (998)
+|.+..+| ..++++++|++|++++|......| .++++++|++|++++|.++.++.. + ..+++|++|++++|. +.
T Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~ 184 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IK 184 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CC
T ss_pred CCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-cc
Confidence 99888776 468889999999999887766666 588899999999999888877654 3 345788888888876 44
Q ss_pred cccccccCCCC---------------------------CccEEEcccCcccccccCccc----------------ccccc
Q 001897 645 KIQAGIICRLS---------------------------SLEILDMTLSDYHWRVKGQED----------------EGQTN 681 (998)
Q Consensus 645 ~~p~~~l~~l~---------------------------~L~~L~l~~~~~~~~~~~~~~----------------~~~~~ 681 (998)
.+++..+..++ +|+.|++++|.+....+.... -....
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 44433344333 334444444433211100000 00001
Q ss_pred cccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecC---------CCC----CCCCCccccEEEEecccCchh
Q 001897 682 FEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGP---------TAN----SLPTKHDERRVTISGIDLSGE 748 (998)
Q Consensus 682 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~---------~~~----~~~~~~~L~~L~l~~~~l~~~ 748 (998)
...++.+++|+.|+++.+.+....+..+..+++|+.|++..+. ++. .+..+++|+.|++++|.++..
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 1335556667777666655554444445555556655553211 110 233455666666666665543
Q ss_pred hHHH--hhhcCceeecccccCc-h----------------------hhhhhhhhcccccCCCCCEEEEeCCCCccccCCC
Q 001897 749 WIGW--LLTNASSLILNNCWGL-D----------------------QMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGG 803 (998)
Q Consensus 749 ~~~~--~~~~L~~L~L~~c~~l-~----------------------~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 803 (998)
.+.. .+++|++|++++|... . +.+....+..+..+++|+.|++++|.+......
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~- 423 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG- 423 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS-
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc-
Confidence 3222 2455666666554210 0 011112233455667777777777765432111
Q ss_pred CCCCCCCCCCcceeecccccccc--------------------------ccccccccccccCCCccEEEeecCccccccc
Q 001897 804 CAAHDDLLPNLEELHLHDLAYLG--------------------------NISGLVGYLGLRFSKLRLMEVTQCPRLKYLL 857 (998)
Q Consensus 804 ~~~~~~~l~~L~~L~L~~~~~l~--------------------------~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 857 (998)
.....+++|++|++++|.... .+|..+ ..+++|+.|+++++ +++.++
T Consensus 424 --~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~----~~l~~L~~L~Ls~N-~l~~i~ 496 (680)
T 1ziw_A 424 --QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF----QPLRNLTILDLSNN-NIANIN 496 (680)
T ss_dssp --GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT----TTCTTCCEEECCSS-CCCCCC
T ss_pred --ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc----ccCCCCCEEECCCC-CCCcCC
Confidence 122334555555555553211 111111 13556666666664 344444
Q ss_pred chhHHHhhCCCCCEEEEecc
Q 001897 858 TYGSFILALPNLQEIKVSFC 877 (998)
Q Consensus 858 ~~~~~~~~l~~L~~L~l~~c 877 (998)
.. .+..+++|+.|+++++
T Consensus 497 ~~--~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 497 DD--MLEGLEKLEILDLQHN 514 (680)
T ss_dssp TT--TTTTCTTCCEEECCSS
T ss_pred hh--hhccccccCEEeCCCC
Confidence 32 2456777777777765
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.1e-26 Score=269.05 Aligned_cols=407 Identities=14% Similarity=0.123 Sum_probs=231.5
Q ss_pred ccceEEEeecCCccccC-CCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEee
Q 001897 513 NSLKRVSFMNNSITKLP-DCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLL 591 (998)
Q Consensus 513 ~~l~~l~l~~~~~~~l~-~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L 591 (998)
+++++|++++|.+..++ ..+..+++|++|++++| .+..+++..|.++++|++|++++|.+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 44555555555554443 23334455555555554 33333333344555555555555555544444 4555555555
Q ss_pred cCCCCCC-CCc-cccCCCCCCeeeecCCCCcccChhhhcCcCC--cEEeCCCCcc--ccccccc----------------
Q 001897 592 RDCFYLE-DLP-ALGGLTKLQDLDLSATSIRELPRGMENLSNL--RRLNLSRTHY--LKKIQAG---------------- 649 (998)
Q Consensus 592 ~~~~~~~-~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--l~~~p~~---------------- 649 (998)
++|.... .+| .++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 5544333 233 35555555555555554443 233444444 5555554442 1111211
Q ss_pred ---------ccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCch---hHhcccce
Q 001897 650 ---------IICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDL---TWIGRLRS 717 (998)
Q Consensus 650 ---------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~ 717 (998)
.+.++++|+.|++++|....... .....+..++.+++|+.|+++.+.+.......+ ....+|+.
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCS----YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTH----HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccc----eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 01123333333333322000000 000112245556666666665544432111111 12347888
Q ss_pred eEEeec----CCCCCC-----CCCccccEEEEecccCch--hhHHHhh--hcCceeecccccCchhhhhhhhhcccccCC
Q 001897 718 FQFFIG----PTANSL-----PTKHDERRVTISGIDLSG--EWIGWLL--TNASSLILNNCWGLDQMLETLVIDSVGAFA 784 (998)
Q Consensus 718 L~l~~~----~~~~~~-----~~~~~L~~L~l~~~~l~~--~~~~~~~--~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~ 784 (998)
|++..+ .++..+ ..+..|+.++++++.+.- ......+ .+|+.|++++|.-.. ......++
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~~l~ 324 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH-------MLCPSKIS 324 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC-------CCCCSSCC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc-------ccchhhCC
Confidence 888654 334444 667788888998887621 1222222 459999999875321 11126789
Q ss_pred CCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccccc--ccccccccccccCCCccEEEeecCccccc-ccchhH
Q 001897 785 SLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLG--NISGLVGYLGLRFSKLRLMEVTQCPRLKY-LLTYGS 861 (998)
Q Consensus 785 ~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~--~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-l~~~~~ 861 (998)
+|+.|++++|.+..... .....+++|++|++++|.... .+|..+. .+++|+.|+++++. ++. ++..
T Consensus 325 ~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~----~l~~L~~L~Ls~N~-l~~~l~~~-- 393 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVF----ENCGHLTELETLILQMNQLKELSKIAEMTT----QMKSLQQLDISQNS-VSYDEKKG-- 393 (520)
T ss_dssp CCCEEECCSSCCCTTTT----TTCCCCSSCCEEECCSSCCCBHHHHHHHHT----TCTTCCEEECCSSC-CBCCGGGC--
T ss_pred cccEEEeECCccChhhh----hhhccCCCCCEEEccCCccCccccchHHHh----hCCCCCEEECCCCc-CCcccccc--
Confidence 99999999998765322 345678999999999995432 3333222 48999999999875 444 5532
Q ss_pred HHhhCCCCCEEEEeccccchhhhccccccCCCCCCCC-CccceeecCCCccccccccCCCCCCCccEEEEecCCCCCCCC
Q 001897 862 FILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVV-PNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCNLLRELP 940 (998)
Q Consensus 862 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~-p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~~lP 940 (998)
.+..+++|+.|++++|.--..++ ..+ ++|++|++++| .++.+|.....+++|++|++++| .++.+|
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~-----------~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIF-----------RCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGG-----------GSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCC
T ss_pred hhccCccCCEEECcCCCCCcchh-----------hhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccC
Confidence 24568999999999886333322 123 79999999997 57788887779999999999998 688999
Q ss_pred CC-CcccCCcceEecchhhh
Q 001897 941 LT-AQNADTVKEIIGELQWW 959 (998)
Q Consensus 941 ~~-~~~l~~L~~l~~~~~w~ 959 (998)
.. +..+++|++|....+-|
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHhccCCcccEEECcCCCC
Confidence 87 88899999998765433
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=3.6e-26 Score=273.12 Aligned_cols=399 Identities=20% Similarity=0.168 Sum_probs=257.1
Q ss_pred eEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCC-hhhhcccCCceEeecCC
Q 001897 516 KRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLP-LSLLQLHNCRALLLRDC 594 (998)
Q Consensus 516 ~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~ 594 (998)
+.++.++..+..+|..+. ++++.|++++| .+..++...|.++++|++|++++|.+..++ ..+.++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSSCCSSSC--SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCccccCCCcc--ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 456667777888887553 67999999999 677777767899999999999999999875 46899999999999999
Q ss_pred CCCCCCc-cccCCCCCCeeeecCCCCcccCh-hhhcCcCCcEEeCCCCcccc-cccccccCCCCCccEEEcccCcccccc
Q 001897 595 FYLEDLP-ALGGLTKLQDLDLSATSIRELPR-GMENLSNLRRLNLSRTHYLK-KIQAGIICRLSSLEILDMTLSDYHWRV 671 (998)
Q Consensus 595 ~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~-~~p~~~l~~l~~L~~L~l~~~~~~~~~ 671 (998)
......| .++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEEC
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceec
Confidence 8666555 69999999999999999998886 59999999999999998433 35766 899999999999999875322
Q ss_pred cCcccccccccccccccc---------------------------cCceEEEEeecCCC---------------------
Q 001897 672 KGQEDEGQTNFEELGCLE---------------------------RLLVLSIRLENIPS--------------------- 703 (998)
Q Consensus 672 ~~~~~~~~~~~~~l~~l~---------------------------~L~~L~l~~~~~~~--------------------- 703 (998)
+ ..++.++ +|+.|++..+....
T Consensus 166 ~----------~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 235 (570)
T 2z63_A 166 C----------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235 (570)
T ss_dssp G----------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred H----------HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccc
Confidence 1 1222222 34444443221000
Q ss_pred ----------CCCCchhHhcc--cceeEEee-----cCCCCCCCCCccccEEEEecccCchhhHHH--hhhcCceeeccc
Q 001897 704 ----------QGTEDLTWIGR--LRSFQFFI-----GPTANSLPTKHDERRVTISGIDLSGEWIGW--LLTNASSLILNN 764 (998)
Q Consensus 704 ----------~~~~~l~~l~~--L~~L~l~~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~L~~ 764 (998)
.....+..+.+ ++.+.+.. +..+..+..+.+++.|+++++.+.. .+.+ .+ +|++|++++
T Consensus 236 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~ 313 (570)
T 2z63_A 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVN 313 (570)
T ss_dssp ECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEES
T ss_pred cccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeecc
Confidence 00011111111 12222221 1223445567789999999998763 2222 23 899999988
Q ss_pred ccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccccccc--ccccccccccCCCc
Q 001897 765 CWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNI--SGLVGYLGLRFSKL 842 (998)
Q Consensus 765 c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~L 842 (998)
|... .. + ...+++|+.|++++|....... ...+++|++|++++|...... +.... .+++|
T Consensus 314 n~~~-~l------~-~~~l~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~~L 375 (570)
T 2z63_A 314 CKFG-QF------P-TLKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDF----GTTSL 375 (570)
T ss_dssp CBCS-SC------C-BCBCSSCCEEEEESCBSCCBCC------CCBCTTCCEEECCSSCCBEEEEEEHHHH----TCSCC
T ss_pred Cccc-cc------C-cccccccCEEeCcCCccccccc------cccCCCCCEEeCcCCccCcccccccccc----ccCcc
Confidence 7532 11 1 1456778888887776543221 145667777777766322111 11111 24555
Q ss_pred cEEEeecCcccccccch----------------------hHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCc
Q 001897 843 RLMEVTQCPRLKYLLTY----------------------GSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPN 900 (998)
Q Consensus 843 ~~L~l~~c~~L~~l~~~----------------------~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~ 900 (998)
+.|++++|. +..++.. ...+..+++|+.|++++|.-....+ .....+++
T Consensus 376 ~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~ 446 (570)
T 2z63_A 376 KYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------GIFNGLSS 446 (570)
T ss_dssp CEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT--------TTTTTCTT
T ss_pred CEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch--------hhhhcCCc
Confidence 555555442 2222210 0023345555555555553211111 01145789
Q ss_pred cceeecCCCccc-cccccCCCCCCCccEEEEecCCCCCCCCCCCcccCCcceEecchh
Q 001897 901 LRNLELKNLPKL-RTICRQKESWQCLEQVKVIKCNLLRELPLTAQNADTVKEIIGELQ 957 (998)
Q Consensus 901 L~~L~l~~~~~L-~~i~~~~~~l~~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~ 957 (998)
|++|++++|... ..+|..+..+++|+.|++++|.--...|..+..+++|++|....+
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 999999988654 357777888999999999998654444888888899999977543
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=7e-26 Score=269.18 Aligned_cols=408 Identities=16% Similarity=0.170 Sum_probs=261.6
Q ss_pred ccEEeecCCCccccch--hhhcccceEEEeecCCccccC-CCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcC
Q 001897 493 CKSLVRSGAGLTEVSE--TELVNSLKRVSFMNNSITKLP-DCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLS 569 (998)
Q Consensus 493 ~~~l~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~l~-~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~ 569 (998)
...+...+..+..++. ....+++++|++++|.+..++ ..+..+++|++|++++| .+..++...|.++++|++|+++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECC
Confidence 4456666666665543 234678999999999998776 45677999999999999 6778888878999999999999
Q ss_pred CCCCCC--CChhhhcccCCceEeecCCCCCCCCc--cccCCCCCCeeeecCCCCcc-cChhhhcCcCCcEEeCCCCcccc
Q 001897 570 GTRIHS--LPLSLLQLHNCRALLLRDCFYLEDLP--ALGGLTKLQDLDLSATSIRE-LPRGMENLSNLRRLNLSRTHYLK 644 (998)
Q Consensus 570 ~~~~~~--lp~~i~~l~~L~~L~L~~~~~~~~lp--~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~ 644 (998)
+|.+.. .|..++++++|++|++++|.....+| .+.++++|++|++++|.+.. .|..++.+++|++|++++|. ..
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~ 185 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SA 185 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-ST
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-cc
Confidence 999985 46789999999999999998677666 59999999999999999984 78889999999999999987 56
Q ss_pred cccccccCCCCCccEEEcccCcccccccCccc--ccc-------------------cccccccccccCceEEEEeecCCC
Q 001897 645 KIQAGIICRLSSLEILDMTLSDYHWRVKGQED--EGQ-------------------TNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 645 ~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~-------------------~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
.+|...+..+++|+.|++++|.+......... ... .....+..+++|+.+++..+....
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 67766567899999999999987542100000 000 000112334455555554333221
Q ss_pred C------CCCchhHhcc-----------------------------cceeEEeecCCCCCC----CCCccccEEEEeccc
Q 001897 704 Q------GTEDLTWIGR-----------------------------LRSFQFFIGPTANSL----PTKHDERRVTISGID 744 (998)
Q Consensus 704 ~------~~~~l~~l~~-----------------------------L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~ 744 (998)
. ....+..+++ |+.+.+..+.+.... ..+++|+.|++++|.
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence 1 0111122333 444444433322110 124455666666666
Q ss_pred CchhhHHH-----hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeec
Q 001897 745 LSGEWIGW-----LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHL 819 (998)
Q Consensus 745 l~~~~~~~-----~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L 819 (998)
+++..+.. .+++|+.|++++|.-. .... ....+..+++|+.|++++|.+...+ .....+++|++|++
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~--~~~~~~~l~~L~~L~Ls~N~l~~lp-----~~~~~~~~L~~L~L 417 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQK--TGEILLTLKNLTSLDISRNTFHPMP-----DSCQWPEKMRFLNL 417 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHH--HHHHGGGCTTCCEEECTTCCCCCCC-----SCCCCCTTCCEEEC
T ss_pred cccccccchhhhhccccCcEEEccCCccc-cccc--chhhhhcCCCCCEEECCCCCCccCC-----hhhcccccccEEEC
Confidence 55543321 2455666666654321 1100 0012345566666666666554332 22334566666666
Q ss_pred cccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCC
Q 001897 820 HDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVP 899 (998)
Q Consensus 820 ~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p 899 (998)
++|. +..++.. .+++|+.|++++| +++.++ ..+++|++|++++| .++.++. ...++
T Consensus 418 s~N~-l~~l~~~------~~~~L~~L~Ls~N-~l~~~~------~~l~~L~~L~Ls~N-~l~~ip~---------~~~l~ 473 (549)
T 2z81_A 418 SSTG-IRVVKTC------IPQTLEVLDVSNN-NLDSFS------LFLPRLQELYISRN-KLKTLPD---------ASLFP 473 (549)
T ss_dssp TTSC-CSCCCTT------SCTTCSEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSSCCC---------GGGCT
T ss_pred CCCC-cccccch------hcCCceEEECCCC-Chhhhc------ccCChhcEEECCCC-ccCcCCC---------cccCc
Confidence 6663 3333321 1346677777665 344432 25777888888776 3444331 13589
Q ss_pred ccceeecCCCcccccccc-CCCCCCCccEEEEecCCC
Q 001897 900 NLRNLELKNLPKLRTICR-QKESWQCLEQVKVIKCNL 935 (998)
Q Consensus 900 ~L~~L~l~~~~~L~~i~~-~~~~l~~L~~L~i~~C~~ 935 (998)
+|++|+++++ .++.++. .+..+++|+.|++++|+-
T Consensus 474 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 474 VLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp TCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred cCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 9999999997 4555544 477899999999999984
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=279.72 Aligned_cols=406 Identities=19% Similarity=0.155 Sum_probs=249.7
Q ss_pred eEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCC-CCCC-ChhhhcccCCceEeecC
Q 001897 516 KRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTR-IHSL-PLSLLQLHNCRALLLRD 593 (998)
Q Consensus 516 ~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~-~~~l-p~~i~~l~~L~~L~L~~ 593 (998)
+.++.+++.+..+|. -.+++++|++++| .+..++...|.++++|++|++++|. +..+ |..+.++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 467778888999997 3589999999999 5666666667999999999999995 4466 67899999999999999
Q ss_pred CCCCCCCc-cccCCCCCCeeeecCCCCcc-cChh--hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccc
Q 001897 594 CFYLEDLP-ALGGLTKLQDLDLSATSIRE-LPRG--MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHW 669 (998)
Q Consensus 594 ~~~~~~lp-~i~~l~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 669 (998)
|......| .++++++|++|++++|.+.. +|.. ++++++|++|++++|......+...++++++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 98777767 69999999999999999985 5665 89999999999999984443343448999999999999998753
Q ss_pred cccCccccccccccccccc--cc------------------------------CceEEEEeecCCCCCCCchhH------
Q 001897 670 RVKGQEDEGQTNFEELGCL--ER------------------------------LLVLSIRLENIPSQGTEDLTW------ 711 (998)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~l--~~------------------------------L~~L~l~~~~~~~~~~~~l~~------ 711 (998)
..+ ..+..+ ++ |+.|+++.+.+....+..+..
T Consensus 163 ~~~----------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 163 VCE----------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp CCS----------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred eCH----------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 222 122222 33 455555444322211111110
Q ss_pred --------------------------------hcccceeEEeecCC----CCCCCCCccccEEEEecccCchhhHHH--h
Q 001897 712 --------------------------------IGRLRSFQFFIGPT----ANSLPTKHDERRVTISGIDLSGEWIGW--L 753 (998)
Q Consensus 712 --------------------------------l~~L~~L~l~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~--~ 753 (998)
..+|+.|++..+.+ +..+..+++|+.|++++|.++...+.. .
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 312 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC
Confidence 12344444433322 122334445555556555554433322 2
Q ss_pred hhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccc
Q 001897 754 LTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVG 833 (998)
Q Consensus 754 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 833 (998)
+++|++|+|++|.- ....+..+..+++|+.|++++|.+...+. .....+++|++|+|++|. +..++.
T Consensus 313 l~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N~-l~~i~~--- 379 (844)
T 3j0a_A 313 LDNLQVLNLSYNLL-----GELYSSNFYGLPKVAYIDLQKNHIAIIQD----QTFKFLEKLQTLDLRDNA-LTTIHF--- 379 (844)
T ss_dssp CSSCCEEEEESCCC-----SCCCSCSCSSCTTCCEEECCSCCCCCCCS----SCSCSCCCCCEEEEETCC-SCCCSS---
T ss_pred CCCCCEEECCCCCC-----CccCHHHhcCCCCCCEEECCCCCCCccCh----hhhcCCCCCCEEECCCCC-CCcccC---
Confidence 45556666655421 11223344555666666666665433321 223445666666666652 222221
Q ss_pred cccccCCCccEEEeecCc-------------------ccccccchhHHHhhCCCCCEEEEeccc--------------cc
Q 001897 834 YLGLRFSKLRLMEVTQCP-------------------RLKYLLTYGSFILALPNLQEIKVSFCD--------------NL 880 (998)
Q Consensus 834 ~~~~~~~~L~~L~l~~c~-------------------~L~~l~~~~~~~~~l~~L~~L~l~~c~--------------~L 880 (998)
+++|+.|.++++. +++.++.. ..+..+++|+.|+++++. +|
T Consensus 380 -----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L 453 (844)
T 3j0a_A 380 -----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL-YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453 (844)
T ss_dssp -----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTH-HHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC
T ss_pred -----CCCcchhccCCCCcccccccccccceeecccCccccCchh-hhhhcCCccceeeCCCCcccccccccccccCCcc
Confidence 3444444444431 12222111 134578888888888753 22
Q ss_pred hhhhccccccCCC--------CCCCCCccceeecCCCcccccccc-CCCCCCCccEEEEecCCCCCCCCCCCcccCCcce
Q 001897 881 VELFCYYSELNFT--------PETVVPNLRNLELKNLPKLRTICR-QKESWQCLEQVKVIKCNLLRELPLTAQNADTVKE 951 (998)
Q Consensus 881 ~~l~~~~~~~~~~--------~~~~~p~L~~L~l~~~~~L~~i~~-~~~~l~~L~~L~i~~C~~L~~lP~~~~~l~~L~~ 951 (998)
+.+....+..... ....+++|++|+|+++ .++.++. .+..+++|+.|++++| +++.+|.+... ++|+.
T Consensus 454 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~L~~ 530 (844)
T 3j0a_A 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP-ANLEI 530 (844)
T ss_dssp CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC-SCCCE
T ss_pred ccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCC-CCCccChhhhh-ccccE
Confidence 2222222222111 1134577888888876 4555544 3577888999999886 67777766544 78888
Q ss_pred Eecchh
Q 001897 952 IIGELQ 957 (998)
Q Consensus 952 l~~~~~ 957 (998)
|....+
T Consensus 531 L~Ls~N 536 (844)
T 3j0a_A 531 LDISRN 536 (844)
T ss_dssp EEEEEE
T ss_pred EECCCC
Confidence 876544
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=263.32 Aligned_cols=396 Identities=16% Similarity=0.113 Sum_probs=274.1
Q ss_pred eEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC-ChhhhcccCCceEeecCC
Q 001897 516 KRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL-PLSLLQLHNCRALLLRDC 594 (998)
Q Consensus 516 ~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 594 (998)
+++++++|.+..+|..+. ++++.|++++| .+..++...|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 678999999999998765 89999999999 67777777789999999999999999977 678999999999999998
Q ss_pred CCCCCCccccCCCCCCeeeecCCCCcc--cChhhhcCcCCcEEeCCCCcccccccccccCCCCCc--cEEEcccCcc--c
Q 001897 595 FYLEDLPALGGLTKLQDLDLSATSIRE--LPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSL--EILDMTLSDY--H 668 (998)
Q Consensus 595 ~~~~~lp~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L--~~L~l~~~~~--~ 668 (998)
... .+|.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeeccccccc
Confidence 654 67755 89999999999999985 67899999999999999987 433 226778888 9999999876 2
Q ss_pred ccccCcccccccccccccccccCceEEEE--eecCCC-CCCCchhHhcccceeEEeecC-------C---CCCCCCCccc
Q 001897 669 WRVKGQEDEGQTNFEELGCLERLLVLSIR--LENIPS-QGTEDLTWIGRLRSFQFFIGP-------T---ANSLPTKHDE 735 (998)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~--~~~~~~-~~~~~l~~l~~L~~L~l~~~~-------~---~~~~~~~~~L 735 (998)
... +..+..+.. +.+.+. .+.... .....+..+++|+.+++..+. + ...+..+.++
T Consensus 154 ~~~----------~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L 222 (520)
T 2z7x_B 154 KED----------PEGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222 (520)
T ss_dssp SCC----------TTTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTC
T ss_pred ccc----------ccccccccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccch
Confidence 211 123333332 233332 222221 112233445566666665542 0 0122344566
Q ss_pred cEEEEecccCchhhHHHh-----hhcCceeecccccCchhhhhhhhhccc-----ccCCC--------------------
Q 001897 736 RRVTISGIDLSGEWIGWL-----LTNASSLILNNCWGLDQMLETLVIDSV-----GAFAS-------------------- 785 (998)
Q Consensus 736 ~~L~l~~~~l~~~~~~~~-----~~~L~~L~L~~c~~l~~~~~~~~~~~l-----~~l~~-------------------- 785 (998)
+.|+++++.++...+... .++|++|++++|.-... .+..+ +.+++
T Consensus 223 ~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~ 297 (520)
T 2z7x_B 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ-----LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297 (520)
T ss_dssp CEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC-----CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHH
T ss_pred hhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc-----cccchhhcccccCceeEeccccccceecchhhhhc
Confidence 777777766655433322 34677777776532111 11222 33344
Q ss_pred ------CCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccch
Q 001897 786 ------LKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTY 859 (998)
Q Consensus 786 ------L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 859 (998)
|+.|++++|.+.... ....+++|++|++++|.....+|..+. .+++|+.|++++| +++.++..
T Consensus 298 ~~~~~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~l~~~ 366 (520)
T 2z7x_B 298 IFSNMNIKNFTVSGTRMVHML------CPSKISPFLHLDFSNNLLTDTVFENCG----HLTELETLILQMN-QLKELSKI 366 (520)
T ss_dssp HHHTCCCSEEEEESSCCCCCC------CCSSCCCCCEEECCSSCCCTTTTTTCC----CCSSCCEEECCSS-CCCBHHHH
T ss_pred ccccCceeEEEcCCCcccccc------chhhCCcccEEEeECCccChhhhhhhc----cCCCCCEEEccCC-ccCccccc
Confidence 555555555443221 115689999999999966555555443 4899999999987 46655443
Q ss_pred hHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCccccccccCCCCCCCccEEEEecCCCCCCC
Q 001897 860 GSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCNLLREL 939 (998)
Q Consensus 860 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~~l 939 (998)
+..+..+++|+.|++++|.-...++... ...+++|++|++++|.....++.... ++|+.|++++| .++.+
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~i 436 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGD-------CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSI 436 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCS-------CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCC
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccch-------hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-ccccc
Confidence 3467889999999999886333243211 13579999999999865555554332 79999999998 67899
Q ss_pred CCCCcccCCcceEecchh
Q 001897 940 PLTAQNADTVKEIIGELQ 957 (998)
Q Consensus 940 P~~~~~l~~L~~l~~~~~ 957 (998)
|..+..+++|++|....+
T Consensus 437 p~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 437 PKQVVKLEALQELNVASN 454 (520)
T ss_dssp CGGGGGCTTCCEEECCSS
T ss_pred chhhhcCCCCCEEECCCC
Confidence 998889999999987544
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=4.9e-26 Score=277.34 Aligned_cols=350 Identities=14% Similarity=0.135 Sum_probs=220.0
Q ss_pred CCccccCCCCCCCCcceEEEecCCCCCCC------------------CChhh-hcCCCCccEEEcCCCCCC-CCChhhhc
Q 001897 523 NSITKLPDCKVHCPETLTLLLQGNFPLGR------------------VPEKF-LDGFPALRVLNLSGTRIH-SLPLSLLQ 582 (998)
Q Consensus 523 ~~~~~l~~~~~~~~~l~~L~l~~~~~~~~------------------l~~~~-~~~l~~Lr~L~l~~~~~~-~lp~~i~~ 582 (998)
|.+..+|..+..+++|+.|++++|. +.. +|..+ |.++++|++|+|++|.+. .+|..+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 3444466666666677777776663 333 55554 236677777777766543 56666777
Q ss_pred ccCCceEeecCCC-CCC-CCc-cccCC-------CCCCeeeecCCCCcccCh--hhhcCcCCcEEeCCCCcccccccccc
Q 001897 583 LHNCRALLLRDCF-YLE-DLP-ALGGL-------TKLQDLDLSATSIRELPR--GMENLSNLRRLNLSRTHYLKKIQAGI 650 (998)
Q Consensus 583 l~~L~~L~L~~~~-~~~-~lp-~i~~l-------~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~ 650 (998)
+++|++|+|++|. ... .+| .++++ ++|++|++++|.+..+|. .++++++|++|++++|. +..+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~- 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A- 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-
Confidence 7777777777665 332 344 34433 367777777776667776 67777777777777766 34666 3
Q ss_pred cCCCCCccEEEcccCcccccccCccccccccccccccccc-CceEEEEeecCCCCCCCchhHhc--ccceeEEeecCCCC
Q 001897 651 ICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLER-LLVLSIRLENIPSQGTEDLTWIG--RLRSFQFFIGPTAN 727 (998)
Q Consensus 651 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~ 727 (998)
++++++|+.|++++|.+. .+ ...+..+++ |+.|+++.+.+.. .+..+..+. +|+.|++..+.+..
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~l----------p~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EI----------PEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CC----------CTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred hcCCCcceEEECcCCccc-cc----------hHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCC
Confidence 667777777777766653 11 234556666 7777776665552 223333332 36666666655432
Q ss_pred CCC---------CCccccEEEEecccCchhhHHH--hhhcCceeecccccCchhhhhhhhh---cccccCCCCCEEEEeC
Q 001897 728 SLP---------TKHDERRVTISGIDLSGEWIGW--LLTNASSLILNNCWGLDQMLETLVI---DSVGAFASLKSLTIAG 793 (998)
Q Consensus 728 ~~~---------~~~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~L~~c~~l~~~~~~~~~---~~l~~l~~L~~L~L~~ 793 (998)
..+ ...+|+.|++++|.++...... .+++|+.|+|++|.-. .+...... +.+.++++|+.|+|++
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC
Confidence 222 2347899999999988432222 3689999999987432 22111100 0122345999999999
Q ss_pred CCCccccCCCCCCCC--CCCCCcceeeccccccccccccccccccccCCCccEEEeecCc-----cc-ccccchhHHHhh
Q 001897 794 SRSSLRPIGGCAAHD--DLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCP-----RL-KYLLTYGSFILA 865 (998)
Q Consensus 794 ~~~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~-----~L-~~l~~~~~~~~~ 865 (998)
|.+...+ ... ..+++|+.|+|++|. +..+|..+. .+++|+.|++++++ ++ ..+| ..+..
T Consensus 738 N~L~~lp-----~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~----~L~~L~~L~Ls~N~~ls~N~l~~~ip---~~l~~ 804 (876)
T 4ecn_A 738 NKLTSLS-----DDFRATTLPYLSNMDVSYNC-FSSFPTQPL----NSSQLKAFGIRHQRDAEGNRILRQWP---TGITT 804 (876)
T ss_dssp SCCCCCC-----GGGSTTTCTTCCEEECCSSC-CSSCCCGGG----GCTTCCEEECCCCBCTTCCBCCCCCC---TTGGG
T ss_pred CCCccch-----HHhhhccCCCcCEEEeCCCC-CCccchhhh----cCCCCCEEECCCCCCcccccccccCh---HHHhc
Confidence 9887544 223 378999999999994 444665543 48999999998743 22 2332 24678
Q ss_pred CCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCcccc
Q 001897 866 LPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLR 913 (998)
Q Consensus 866 l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 913 (998)
+++|+.|+|++|.- ..++ ...+++|+.|+|++|+...
T Consensus 805 L~~L~~L~Ls~N~L-~~Ip----------~~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 805 CPSLIQLQIGSNDI-RKVD----------EKLTPQLYILDIADNPNIS 841 (876)
T ss_dssp CSSCCEEECCSSCC-CBCC----------SCCCSSSCEEECCSCTTCE
T ss_pred CCCCCEEECCCCCC-CccC----------HhhcCCCCEEECCCCCCCc
Confidence 99999999999863 4443 2245899999999987543
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=2e-24 Score=256.74 Aligned_cols=406 Identities=18% Similarity=0.180 Sum_probs=249.9
Q ss_pred eEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC-ChhhhcccCCceEeecCC
Q 001897 516 KRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL-PLSLLQLHNCRALLLRDC 594 (998)
Q Consensus 516 ~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 594 (998)
++++++++.+..+|..+. ++++.|++++| .+..++...|.++++|++|++++|.+..+ |..+.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 566777777766666543 66777777776 45556655567777777777777777655 445677777777777776
Q ss_pred CCCCCCccccCCCCCCeeeecCCCCcccC--hhhhcCcCCcEEeCCCCcccccccccccCCCCCc--cEEEcccCcc--c
Q 001897 595 FYLEDLPALGGLTKLQDLDLSATSIRELP--RGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSL--EILDMTLSDY--H 668 (998)
Q Consensus 595 ~~~~~lp~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L--~~L~l~~~~~--~ 668 (998)
.. +.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|. +.... +..+++| +.|++++|.+ .
T Consensus 111 ~l-~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RL-QNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CC-CEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCCC
T ss_pred cC-CccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeeccccccc
Confidence 53 345533 6777777777777776543 567777777777777665 33221 3344444 7777766655 2
Q ss_pred ccccCcccc----------------cccccccccccccCceEEEEee----------------------------cCCCC
Q 001897 669 WRVKGQEDE----------------GQTNFEELGCLERLLVLSIRLE----------------------------NIPSQ 704 (998)
Q Consensus 669 ~~~~~~~~~----------------~~~~~~~l~~l~~L~~L~l~~~----------------------------~~~~~ 704 (998)
...+..... .......+..+++|+.++++.+ .+...
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 111100000 0000012233444555554433 22111
Q ss_pred CCCc---hhHhcccceeEEeecCCC----CCC-----CCCccccEEEEecccC--chhhHHHhh--hcCceeecccccCc
Q 001897 705 GTED---LTWIGRLRSFQFFIGPTA----NSL-----PTKHDERRVTISGIDL--SGEWIGWLL--TNASSLILNNCWGL 768 (998)
Q Consensus 705 ~~~~---l~~l~~L~~L~l~~~~~~----~~~-----~~~~~L~~L~l~~~~l--~~~~~~~~~--~~L~~L~L~~c~~l 768 (998)
.... .....+|+.|++..+.+. ... ..+..|..+++..+.+ ...+....+ .+|++|++++|.-.
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 0000 011237888888765433 222 3334444445555544 112222222 56999999987432
Q ss_pred hhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEee
Q 001897 769 DQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVT 848 (998)
Q Consensus 769 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 848 (998)
. ......+++|+.|++++|.+..... .....+++|+.|++++| .+..++...... ..+++|+.|+++
T Consensus 345 ~-------~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~-~~l~~L~~L~l~ 411 (562)
T 3a79_B 345 H-------MVCPPSPSSFTFLNFTQNVFTDSVF----QGCSTLKRLQTLILQRN-GLKNFFKVALMT-KNMSSLETLDVS 411 (562)
T ss_dssp C-------CCCCSSCCCCCEEECCSSCCCTTTT----TTCCSCSSCCEEECCSS-CCCBTTHHHHTT-TTCTTCCEEECT
T ss_pred c-------ccCccCCCCceEEECCCCccccchh----hhhcccCCCCEEECCCC-CcCCcccchhhh-cCCCCCCEEECC
Confidence 1 1122678999999999998775332 44567899999999998 444443211111 148999999999
Q ss_pred cCccccc-ccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCC-CccceeecCCCccccccccCCCCCCCcc
Q 001897 849 QCPRLKY-LLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVV-PNLRNLELKNLPKLRTICRQKESWQCLE 926 (998)
Q Consensus 849 ~c~~L~~-l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~-p~L~~L~l~~~~~L~~i~~~~~~l~~L~ 926 (998)
++. ++. ++.. .+..+++|+.|++++|.--..++ ..+ ++|++|+++++ .++.+|.....+++|+
T Consensus 412 ~N~-l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-----------~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~ 476 (562)
T 3a79_B 412 LNS-LNSHAYDR--TCAWAESILVLNLSSNMLTGSVF-----------RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQ 476 (562)
T ss_dssp TSC-CBSCCSSC--CCCCCTTCCEEECCSSCCCGGGG-----------SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCS
T ss_pred CCc-CCCccChh--hhcCcccCCEEECCCCCCCcchh-----------hhhcCcCCEEECCCC-cCcccChhhcCCCCCC
Confidence 975 444 5432 24578999999999986322222 134 69999999997 7888998888999999
Q ss_pred EEEEecCCCCCCCCCC-CcccCCcceEecchhhh
Q 001897 927 QVKVIKCNLLRELPLT-AQNADTVKEIIGELQWW 959 (998)
Q Consensus 927 ~L~i~~C~~L~~lP~~-~~~l~~L~~l~~~~~w~ 959 (998)
.|++++| .++.+|.. +..+++|+.|....+-|
T Consensus 477 ~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 477 ELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 9999996 57899987 88899999998765544
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=3e-24 Score=248.80 Aligned_cols=349 Identities=17% Similarity=0.207 Sum_probs=244.6
Q ss_pred hcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEe
Q 001897 511 LVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALL 590 (998)
Q Consensus 511 ~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 590 (998)
...+++.+++.++.+..+|. +..+++|++|++++| .+..++. +..+++|++|++++|.+..++. ++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 35689999999999888875 667899999999998 5666665 6899999999999999998877 89999999999
Q ss_pred ecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccccc
Q 001897 591 LRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWR 670 (998)
Q Consensus 591 L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 670 (998)
+++|. +..++.+.++++|++|++++|.+..+| .++.+++|++|+++++ +..++. ++++++|+.|++++|.+.
T Consensus 119 L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~-- 190 (466)
T 1o6v_A 119 LFNNQ-ITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVS-- 190 (466)
T ss_dssp CCSSC-CCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred CCCCC-CCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCC--
Confidence 99986 445566899999999999999888876 4889999999998643 344443 789999999999988763
Q ss_pred ccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhH
Q 001897 671 VKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWI 750 (998)
Q Consensus 671 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 750 (998)
.+..+..+++|+.|+++.+.+....+ +..+++|+ .|++++|.+.....
T Consensus 191 ----------~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~--------------------~L~l~~n~l~~~~~ 238 (466)
T 1o6v_A 191 ----------DISVLAKLTNLESLIATNNQISDITP--LGILTNLD--------------------ELSLNGNQLKDIGT 238 (466)
T ss_dssp ----------CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCC--------------------EEECCSSCCCCCGG
T ss_pred ----------CChhhccCCCCCEEEecCCccccccc--ccccCCCC--------------------EEECCCCCcccchh
Confidence 12457788889999888776654322 33344444 45555554443211
Q ss_pred HHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccccccccc
Q 001897 751 GWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISG 830 (998)
Q Consensus 751 ~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~ 830 (998)
...+++|+.|++++|.-.. ...+..+++|+.|++++|.+...+. ...+++|+.|++++|. +..++.
T Consensus 239 l~~l~~L~~L~l~~n~l~~-------~~~~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~-l~~~~~ 304 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISN-------LAPLSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQ-LEDISP 304 (466)
T ss_dssp GGGCTTCSEEECCSSCCCC-------CGGGTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSC-CSCCGG
T ss_pred hhcCCCCCEEECCCCcccc-------chhhhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCc-ccCchh
Confidence 1235677777777754211 1125677788888888877654321 4457788888888773 444433
Q ss_pred ccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCc
Q 001897 831 LVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLP 910 (998)
Q Consensus 831 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~ 910 (998)
. ..+++|+.|++++| +++.+++ +..+++|+.|++++|. +..+. ....+++|+.|++++|+
T Consensus 305 ~-----~~l~~L~~L~L~~n-~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~---------~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 305 I-----SNLKNLTYLTLYFN-NISDISP----VSSLTKLQRLFFYNNK-VSDVS---------SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp G-----GGCTTCSEEECCSS-CCSCCGG----GGGCTTCCEEECCSSC-CCCCG---------GGTTCTTCCEEECCSSC
T ss_pred h-----cCCCCCCEEECcCC-cCCCchh----hccCccCCEeECCCCc-cCCch---------hhccCCCCCEEeCCCCc
Confidence 1 14778888888877 4555443 3477888888888773 33331 11357888888888875
Q ss_pred cccccccCCCCCCCccEEEEecCCCCCCCCC
Q 001897 911 KLRTICRQKESWQCLEQVKVIKCNLLRELPL 941 (998)
Q Consensus 911 ~L~~i~~~~~~l~~L~~L~i~~C~~L~~lP~ 941 (998)
.....| ...+++|+.|++++|+ ++.+|.
T Consensus 365 l~~~~~--~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 365 ISDLTP--LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp CCBCGG--GTTCTTCCEEECCCEE-EECCCB
T ss_pred cCccch--hhcCCCCCEEeccCCc-ccCCch
Confidence 433333 6678888888888764 444443
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=5.5e-24 Score=246.55 Aligned_cols=346 Identities=21% Similarity=0.239 Sum_probs=263.1
Q ss_pred CCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeee
Q 001897 535 CPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDL 614 (998)
Q Consensus 535 ~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l 614 (998)
+++++.|.+.++ .+..+|. +..+++|++|++++|.+..+|. +.++++|++|++++|..... +.++++++|++|++
T Consensus 45 l~~l~~L~l~~~-~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEEC
T ss_pred hccccEEecCCC-CCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccC-hhhcCCCCCCEEEC
Confidence 567888998887 5666764 5789999999999999998887 89999999999999875544 44999999999999
Q ss_pred cCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceE
Q 001897 615 SATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVL 694 (998)
Q Consensus 615 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 694 (998)
++|.++.+|. +.++++|++|++++|. +..++. ++++++|+.|++.++ +. ....+.++++|+.|
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~-~~------------~~~~~~~l~~L~~L 182 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQ-VT------------DLKPLANLTTLERL 182 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEES-CC------------CCGGGTTCTTCCEE
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCc-cc------------CchhhccCCCCCEE
Confidence 9999998876 8899999999999987 666664 789999999998532 21 12347788889999
Q ss_pred EEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHHhhhcCceeecccccCchhhhhh
Q 001897 695 SIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLDQMLET 774 (998)
Q Consensus 695 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~~~~~ 774 (998)
+++.+.+... ..+. .+++|+.|++++|.+....+...+++|+.|++++|.-. .
T Consensus 183 ~l~~n~l~~~--~~l~--------------------~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~---- 235 (466)
T 1o6v_A 183 DISSNKVSDI--SVLA--------------------KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-D---- 235 (466)
T ss_dssp ECCSSCCCCC--GGGG--------------------GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-C----
T ss_pred ECcCCcCCCC--hhhc--------------------cCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc-c----
Confidence 8877665442 1122 23456677777777665555556899999999997532 1
Q ss_pred hhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccc
Q 001897 775 LVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLK 854 (998)
Q Consensus 775 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 854 (998)
.+.+..+++|+.|++++|.+...+. ...+++|++|++++|. +..++. .. .+++|+.|++++| +++
T Consensus 236 --~~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~-l~~~~~-~~----~l~~L~~L~L~~n-~l~ 300 (466)
T 1o6v_A 236 --IGTLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQ-ISNISP-LA----GLTALTNLELNEN-QLE 300 (466)
T ss_dssp --CGGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSC-CCCCGG-GT----TCTTCSEEECCSS-CCS
T ss_pred --chhhhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCc-cCcccc-cc----CCCccCeEEcCCC-ccc
Confidence 1356788999999999998764432 5668999999999994 444443 21 4899999999997 466
Q ss_pred cccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCccccccccCCCCCCCccEEEEecCC
Q 001897 855 YLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCN 934 (998)
Q Consensus 855 ~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~ 934 (998)
.++. +..+++|+.|++++|. +..+.. ...+++|++|++++| .+..++ .+..+++|+.|++++|+
T Consensus 301 ~~~~----~~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 301 DISP----ISNLKNLTYLTLYFNN-ISDISP---------VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CCGG----GGGCTTCSEEECCSSC-CSCCGG---------GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred Cchh----hcCCCCCCEEECcCCc-CCCchh---------hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 6654 4589999999999984 433321 146899999999998 456553 57789999999999986
Q ss_pred CCCCCCCCCcccCCcceEecchhhhccc
Q 001897 935 LLRELPLTAQNADTVKEIIGELQWWNLL 962 (998)
Q Consensus 935 ~L~~lP~~~~~l~~L~~l~~~~~w~~~l 962 (998)
- +.++. +..+++|+.|....+-|..+
T Consensus 365 l-~~~~~-~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 365 I-SDLTP-LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp C-CBCGG-GTTCTTCCEEECCCEEEECC
T ss_pred c-Cccch-hhcCCCCCEEeccCCcccCC
Confidence 4 44443 78889999999877666654
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=4.8e-25 Score=264.80 Aligned_cols=368 Identities=16% Similarity=0.173 Sum_probs=267.8
Q ss_pred hcccceEEEeecCCccc------------------cCCCCC--CCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCC
Q 001897 511 LVNSLKRVSFMNNSITK------------------LPDCKV--HCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSG 570 (998)
Q Consensus 511 ~~~~l~~l~l~~~~~~~------------------l~~~~~--~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~ 570 (998)
...++++|++++|.+.. +|..+. .+++|++|++++|.....+|.. +.++++|++|++++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVAC 282 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcC
Confidence 46789999999999987 999988 9999999999999777788865 48999999999999
Q ss_pred CC-CC--CCChhhhcc------cCCceEeecCCCCCCCCcc---ccCCCCCCeeeecCCCCc-ccChhhhcCcCCcEEeC
Q 001897 571 TR-IH--SLPLSLLQL------HNCRALLLRDCFYLEDLPA---LGGLTKLQDLDLSATSIR-ELPRGMENLSNLRRLNL 637 (998)
Q Consensus 571 ~~-~~--~lp~~i~~l------~~L~~L~L~~~~~~~~lp~---i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l 637 (998)
|. ++ .+|..++.+ ++|++|++++|... .+|. ++++++|++|++++|.+. .+| .++.+++|++|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 98 87 489988887 99999999999876 6664 999999999999999999 999 8999999999999
Q ss_pred CCCcccccccccccCCCCC-ccEEEcccCcccccccCcccccccccccccc--cccCceEEEEeecCCCCCCCchhHhcc
Q 001897 638 SRTHYLKKIQAGIICRLSS-LEILDMTLSDYHWRVKGQEDEGQTNFEELGC--LERLLVLSIRLENIPSQGTEDLTWIGR 714 (998)
Q Consensus 638 ~~~~~l~~~p~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~ 714 (998)
++|. +..+|.. ++++++ |++|++++|.+. .++ ..+.. +++|+.|+++.+.+....+..+...
T Consensus 361 ~~N~-l~~lp~~-l~~l~~~L~~L~Ls~N~l~-~lp----------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~-- 425 (636)
T 4eco_A 361 AYNQ-ITEIPAN-FCGFTEQVENLSFAHNKLK-YIP----------NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL-- 425 (636)
T ss_dssp CSSE-EEECCTT-SEEECTTCCEEECCSSCCS-SCC----------SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT--
T ss_pred CCCc-cccccHh-hhhhcccCcEEEccCCcCc-ccc----------hhhhhcccCccCEEECcCCcCCCcchhhhccc--
Confidence 9998 6688887 899999 999999999875 222 23343 3478888888777665443332200
Q ss_pred cceeEEeecCCCCCCCCCccccEEEEecccCchhhHHH--hhhcCceeecccccCchhhhhhhhhccc-------ccCCC
Q 001897 715 LRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGW--LLTNASSLILNNCWGLDQMLETLVIDSV-------GAFAS 785 (998)
Q Consensus 715 L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~L~~c~~l~~~~~~~~~~~l-------~~l~~ 785 (998)
....-...+|+.|++++|.++...... .+++|+.|++++|.-. .+ ....+ ..+++
T Consensus 426 -----------~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i----~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 426 -----------DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI----PKNSLKDENENFKNTYL 489 (636)
T ss_dssp -----------CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC----CSSSSEETTEECTTGGG
T ss_pred -----------ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc----CHHHhccccccccccCC
Confidence 000013346777888888776322222 2678888888886432 11 11111 22348
Q ss_pred CCEEEEeCCCCccccCCCCCCCC--CCCCCcceeeccccccccccccccccccccCCCccEEEeecCc-----c-ccccc
Q 001897 786 LKSLTIAGSRSSLRPIGGCAAHD--DLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCP-----R-LKYLL 857 (998)
Q Consensus 786 L~~L~L~~~~~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~-----~-L~~l~ 857 (998)
|+.|+|++|.+...+. .. ..+++|+.|+|++|... .+|..+. .+++|+.|+++++. + ...+|
T Consensus 490 L~~L~Ls~N~l~~lp~-----~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~----~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 490 LTSIDLRFNKLTKLSD-----DFRATTLPYLVGIDLSYNSFS-KFPTQPL----NSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp CCEEECCSSCCCBCCG-----GGSTTTCTTCCEEECCSSCCS-SCCCGGG----GCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ccEEECcCCcCCccCh-----hhhhccCCCcCEEECCCCCCC-CcChhhh----cCCCCCEEECCCCcccccCcccccCh
Confidence 9999999998875442 23 36899999999999544 4766544 48999999996543 2 23333
Q ss_pred chhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCcccccccc---------CCCCCCCccEE
Q 001897 858 TYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLRTICR---------QKESWQCLEQV 928 (998)
Q Consensus 858 ~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~---------~~~~l~~L~~L 928 (998)
. .+..+++|+.|++++|.- ..++ ...+++|++|++++|+... +.. ....+...+..
T Consensus 560 ~---~l~~l~~L~~L~Ls~N~l-~~ip----------~~~~~~L~~L~Ls~N~l~~-~~~~~~~~~~~~~~~~l~~~~~~ 624 (636)
T 4eco_A 560 E---GITLCPSLTQLQIGSNDI-RKVN----------EKITPNISVLDIKDNPNIS-IDLSYVCPYIEAGMYMLFYDKTQ 624 (636)
T ss_dssp T---TGGGCSSCCEEECCSSCC-CBCC----------SCCCTTCCEEECCSCTTCE-EECTTTHHHHHTTCCEEECCTTS
T ss_pred H---HHhcCCCCCEEECCCCcC-CccC----------HhHhCcCCEEECcCCCCcc-ccHHhcchhhhcccceeecCCcc
Confidence 2 456899999999998863 4433 2245899999999986443 211 11122334556
Q ss_pred EEecCCCCC
Q 001897 929 KVIKCNLLR 937 (998)
Q Consensus 929 ~i~~C~~L~ 937 (998)
++.+|+.|.
T Consensus 625 ~i~~C~~L~ 633 (636)
T 4eco_A 625 DIRGCDALD 633 (636)
T ss_dssp EEESCGGGC
T ss_pred ccCCCcccc
Confidence 788998764
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=2.2e-23 Score=252.61 Aligned_cols=438 Identities=16% Similarity=0.146 Sum_probs=272.5
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccCC-CCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPD-CKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
.+.+.+.++..+|. ..+..+++|++++|.++.+|. .+..+++|++|++++| .+..++++.|.++++|++|+|++|.+
T Consensus 35 ~~~c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcC
Confidence 34566777888875 466789999999999999886 4667999999999999 78888888889999999999999999
Q ss_pred CCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCc--ccChhhhcCcCCcEEeCCCCccccccccc
Q 001897 574 HSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIR--ELPRGMENLSNLRRLNLSRTHYLKKIQAG 649 (998)
Q Consensus 574 ~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~ 649 (998)
+.+|. .|.++++|++|++++|......+ .++++++|++|++++|.+. .+|..++.+++|++|++++|. +..++..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 191 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCT 191 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccc
Confidence 99986 58999999999999997655544 5999999999999999987 457889999999999999997 5554443
Q ss_pred ccCCCCCcc----EEEcccCcccccccCccc--------------------------------------------ccccc
Q 001897 650 IICRLSSLE----ILDMTLSDYHWRVKGQED--------------------------------------------EGQTN 681 (998)
Q Consensus 650 ~l~~l~~L~----~L~l~~~~~~~~~~~~~~--------------------------------------------~~~~~ 681 (998)
.+..+.+++ .++++.|.+....+.... .....
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 344433322 344444433211100000 00000
Q ss_pred cccccccccCceEEEEeecCCC-------------------------CCCCchhHhcccceeEEeecCCCCC--------
Q 001897 682 FEELGCLERLLVLSIRLENIPS-------------------------QGTEDLTWIGRLRSFQFFIGPTANS-------- 728 (998)
Q Consensus 682 ~~~l~~l~~L~~L~l~~~~~~~-------------------------~~~~~l~~l~~L~~L~l~~~~~~~~-------- 728 (998)
...+..+..+....+....... .....+.....|+.|.+..+.+...
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L 351 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 351 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhh
Confidence 0011111111111111110000 0001122233455555543322111
Q ss_pred ---------------CCCCccccEEEEecccCchhh----HHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEE
Q 001897 729 ---------------LPTKHDERRVTISGIDLSGEW----IGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSL 789 (998)
Q Consensus 729 ---------------~~~~~~L~~L~l~~~~l~~~~----~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L 789 (998)
...+++++.+++++|.+.... ....+.+|+.|++..+.... ....+..+++|+.+
T Consensus 352 ~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~------~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 352 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT------MSSNFLGLEQLEHL 425 (635)
T ss_dssp CEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE------ECSCCTTCTTCCEE
T ss_pred hhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc------ccccccccccccch
Confidence 112234445555544432110 11123445555554432211 12334556677777
Q ss_pred EEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCC
Q 001897 790 TIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNL 869 (998)
Q Consensus 790 ~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L 869 (998)
++.++....... ......+++|+.++++.|......+.... .++.|+.|+++++..+..+.+. .+..+++|
T Consensus 426 ~l~~~~~~~~~~---~~~~~~l~~l~~l~ls~n~l~~~~~~~~~----~~~~L~~L~Ls~N~~~~~~~~~--~~~~l~~L 496 (635)
T 4g8a_A 426 DFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPD--IFTELRNL 496 (635)
T ss_dssp ECTTSEEESTTS---SCTTTTCTTCCEEECTTSCCEECCTTTTT----TCTTCCEEECTTCEEGGGEECS--CCTTCTTC
T ss_pred hhhhcccccccc---ccccccccccccccccccccccccccccc----cchhhhhhhhhhcccccccCch--hhhhcccc
Confidence 776665443221 12344567788888887744333332222 4788999999988766654432 35678999
Q ss_pred CEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCcccccccc-CCCCCCCccEEEEecCCCCCCCCCCCccc-C
Q 001897 870 QEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLRTICR-QKESWQCLEQVKVIKCNLLRELPLTAQNA-D 947 (998)
Q Consensus 870 ~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~l~~L~~L~i~~C~~L~~lP~~~~~l-~ 947 (998)
+.|++++|. ++.++... ...+++|++|+|+++ .++.++. .+..+++|+.|++++|.-....|..+.++ +
T Consensus 497 ~~L~Ls~N~-L~~l~~~~-------f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 497 TFLDLSQCQ-LEQLSPTA-------FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567 (635)
T ss_dssp CEEECTTSC-CCEECTTT-------TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCT
T ss_pred CEEECCCCc-cCCcChHH-------HcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhC
Confidence 999999883 55443211 146899999999996 5666644 46789999999999976444446677777 6
Q ss_pred CcceEecchhhh
Q 001897 948 TVKEIIGELQWW 959 (998)
Q Consensus 948 ~L~~l~~~~~w~ 959 (998)
+|+.|....+-|
T Consensus 568 ~L~~L~L~~Np~ 579 (635)
T 4g8a_A 568 SLAFLNLTQNDF 579 (635)
T ss_dssp TCCEEECTTCCB
T ss_pred cCCEEEeeCCCC
Confidence 899998655433
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=8.4e-24 Score=244.91 Aligned_cols=377 Identities=16% Similarity=0.167 Sum_probs=198.4
Q ss_pred EEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC-CC-ChhhhcccCCceEeecCCC
Q 001897 518 VSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH-SL-PLSLLQLHNCRALLLRDCF 595 (998)
Q Consensus 518 l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~-~l-p~~i~~l~~L~~L~L~~~~ 595 (998)
+...++.+..+|. + .+++++|++++| .+..++...|.++++|++|++++|.+. .+ |..+.++++|++|++++|.
T Consensus 15 ~~c~~~~l~~lp~-l--~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 15 AICINRGLHQVPE-L--PAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EECCSSCCSSCCC-C--CTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cCcCCCCcccCCC-C--CCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 3344444444444 1 245555555555 333443333455556666666655553 33 3345556666666666555
Q ss_pred CCCCCc-cccCCCCCCeeeecCCCCcc-cChh--hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccc
Q 001897 596 YLEDLP-ALGGLTKLQDLDLSATSIRE-LPRG--MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRV 671 (998)
Q Consensus 596 ~~~~lp-~i~~l~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 671 (998)
.....| .++++++|++|++++|.++. +|.. ++.+++|++|++++|......|...++++++|++|++++|.+....
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 444434 45556666666666655553 2332 5555666666666555222223333455666666666555543211
Q ss_pred cCccccccccccccccc--ccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhh
Q 001897 672 KGQEDEGQTNFEELGCL--ERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEW 749 (998)
Q Consensus 672 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 749 (998)
+ ..+..+ .+|+.|+++.+.+.......+... .........+|+.|++++|.+++..
T Consensus 171 ~----------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~------------~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 171 E----------EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE------------KCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp T----------TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH------------HHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred h----------hhhhccccccccccccccCcccccchhhcccc------------ccccccccceeeeEecCCCcccccc
Confidence 1 122222 344444444333332221111000 0001123346778888888877666
Q ss_pred HHHh-----hhcCceeecccccCchhhhhh-----hhhcccc--cCCCCCEEEEeCCCCccccCCCCCCCCCCCCCccee
Q 001897 750 IGWL-----LTNASSLILNNCWGLDQMLET-----LVIDSVG--AFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEEL 817 (998)
Q Consensus 750 ~~~~-----~~~L~~L~L~~c~~l~~~~~~-----~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L 817 (998)
+.++ .++|+.|++++|......+.. .....+. ..++|+.|++++|.+...+. .....+++|++|
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L 304 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK----SVFSHFTDLEQL 304 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT----TTTTTCTTCCEE
T ss_pred hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch----hhcccCCCCCEE
Confidence 5553 267888888876432211100 0001111 23678888888888765443 344567888888
Q ss_pred eccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCC
Q 001897 818 HLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETV 897 (998)
Q Consensus 818 ~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~ 897 (998)
+|++|......+..+. .+++|+.|++++| .++.+++. .+..+++|+.|++++|. +..+... ....
T Consensus 305 ~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~~~--~~~~l~~L~~L~Ls~N~-l~~~~~~-------~~~~ 369 (455)
T 3v47_A 305 TLAQNEINKIDDNAFW----GLTHLLKLNLSQN-FLGSIDSR--MFENLDKLEVLDLSYNH-IRALGDQ-------SFLG 369 (455)
T ss_dssp ECTTSCCCEECTTTTT----TCTTCCEEECCSS-CCCEECGG--GGTTCTTCCEEECCSSC-CCEECTT-------TTTT
T ss_pred ECCCCcccccChhHhc----CcccCCEEECCCC-ccCCcChh--HhcCcccCCEEECCCCc-ccccChh-------hccc
Confidence 8888854333232222 3678888888876 45554332 35667888888887764 3322111 1135
Q ss_pred CCccceeecCCCccccccccC-CCCCCCccEEEEecCCCCCCCC
Q 001897 898 VPNLRNLELKNLPKLRTICRQ-KESWQCLEQVKVIKCNLLRELP 940 (998)
Q Consensus 898 ~p~L~~L~l~~~~~L~~i~~~-~~~l~~L~~L~i~~C~~L~~lP 940 (998)
+++|++|+++++ .++.++.. +..+++|+.|++++|+--...|
T Consensus 370 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 370 LPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 678888888775 45555543 4567788888888776443333
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.7e-24 Score=250.67 Aligned_cols=383 Identities=17% Similarity=0.152 Sum_probs=261.7
Q ss_pred EeecCCCccccchhhhcccceEEEeecCCcccc-CCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC
Q 001897 496 LVRSGAGLTEVSETELVNSLKRVSFMNNSITKL-PDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH 574 (998)
Q Consensus 496 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l-~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~ 574 (998)
+...+.++..+|. ..+++++|++++|.+..+ |..+..+++|++|++++|.....++...|.++++|++|++++|.+.
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 4556667777776 668999999999999876 6667889999999999996555777777899999999999999998
Q ss_pred CC-ChhhhcccCCceEeecCCCCCCCCc-c--ccCCCCCCeeeecCCCCccc-Chh-hhcCcCCcEEeCCCCcccccccc
Q 001897 575 SL-PLSLLQLHNCRALLLRDCFYLEDLP-A--LGGLTKLQDLDLSATSIREL-PRG-MENLSNLRRLNLSRTHYLKKIQA 648 (998)
Q Consensus 575 ~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~--i~~l~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~l~~~p~ 648 (998)
.+ |..++++++|++|++++|......| . +.++++|++|++++|.+..+ |.. +.++++|++|++++|. +..++.
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 171 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICE 171 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccCh
Confidence 76 7789999999999999998665444 3 99999999999999999977 555 8899999999999998 444444
Q ss_pred cccCCC--CCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHh---cccceeEEeec
Q 001897 649 GIICRL--SSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWI---GRLRSFQFFIG 723 (998)
Q Consensus 649 ~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~ 723 (998)
..+..+ .+|+.|++++|.+....... ........+..+++|+.|+++.+.+....+..+... .+|+.+.+..+
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYW--LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTC--TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred hhhhccccccccccccccCcccccchhh--ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 336665 78999999998764321100 000111234456788899887776654333333332 45555555433
Q ss_pred CCCCCCCCCccccEEEEecccCchhhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCC
Q 001897 724 PTANSLPTKHDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGG 803 (998)
Q Consensus 724 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 803 (998)
...........+..+ .. ..+.....++|+.|++++|.-. ...+..++.+++|+.|++++|.+...+.
T Consensus 250 ~~~~~~~~~~~~~~~--~~----~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-- 316 (455)
T 3v47_A 250 YNMGSSFGHTNFKDP--DN----FTFKGLEASGVKTCDLSKSKIF-----ALLKSVFSHFTDLEQLTLAQNEINKIDD-- 316 (455)
T ss_dssp TTTSCCTTCCSSCCC--CT----TTTGGGTTSCCCEEECCSSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECT--
T ss_pred cccccccchhhhccC--cc----cccccccccCceEEEecCcccc-----ccchhhcccCCCCCEEECCCCcccccCh--
Confidence 221111000000000 00 0001112367888888875432 2234556788899999999998775543
Q ss_pred CCCCCCCCCCcceeecccccccccc-ccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchh
Q 001897 804 CAAHDDLLPNLEELHLHDLAYLGNI-SGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVE 882 (998)
Q Consensus 804 ~~~~~~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~ 882 (998)
.....+++|++|+|++|.. ..+ +..+. .+++|+.|++++| +++.+++. .+..+++|++|+++++. ++.
T Consensus 317 --~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~~~--~~~~l~~L~~L~L~~N~-l~~ 385 (455)
T 3v47_A 317 --NAFWGLTHLLKLNLSQNFL-GSIDSRMFE----NLDKLEVLDLSYN-HIRALGDQ--SFLGLPNLKELALDTNQ-LKS 385 (455)
T ss_dssp --TTTTTCTTCCEEECCSSCC-CEECGGGGT----TCTTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCSSC-CSC
T ss_pred --hHhcCcccCCEEECCCCcc-CCcChhHhc----CcccCCEEECCCC-cccccChh--hccccccccEEECCCCc-ccc
Confidence 3445688999999998844 443 33222 4788999999887 45555432 35678999999998864 444
Q ss_pred hhccccccCCCCCCCCCccceeecCCCccccc
Q 001897 883 LFCYYSELNFTPETVVPNLRNLELKNLPKLRT 914 (998)
Q Consensus 883 l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 914 (998)
++... ...+++|++|++++++--..
T Consensus 386 ~~~~~-------~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 386 VPDGI-------FDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CCTTT-------TTTCTTCCEEECCSSCBCCC
T ss_pred CCHhH-------hccCCcccEEEccCCCcccC
Confidence 33211 14678999999998764433
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.8e-23 Score=248.51 Aligned_cols=379 Identities=15% Similarity=0.119 Sum_probs=257.5
Q ss_pred CCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCC-hhhhcccCCceEeecCCCCCCCCc-cccCCCCCCee
Q 001897 535 CPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLP-LSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDL 612 (998)
Q Consensus 535 ~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L 612 (998)
|...++++++++ .+..+|..++ ++|++|++++|.+..+| ..+.++++|++|++++|......| .+.++++|++|
T Consensus 30 ~~~~~~l~ls~~-~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNR-NLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTS-CCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCC-CCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 455588999998 6778997663 79999999999999887 489999999999999998766666 59999999999
Q ss_pred eecCCCCcccChhhhcCcCCcEEeCCCCcccccccc-cccCCCCCccEEEcccCcccccccCcccccccccccccccccC
Q 001897 613 DLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQA-GIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERL 691 (998)
Q Consensus 613 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 691 (998)
++++|.++.+|.. .+++|++|++++|. +..++. ..++++++|++|++++|.+.. ..+..+.++ +|
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~----------~~~~~l~~L-~L 171 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ----------LDLLPVAHL-HL 171 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT----------TTTGGGTTS-CE
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc----------Cchhhhhhc-ee
Confidence 9999999999988 89999999999998 555542 348999999999999987741 122334444 45
Q ss_pred ceEEEEeecC--CCCCCCchhH--------------------------hcccceeEEeecCC--------CCCCCCCccc
Q 001897 692 LVLSIRLENI--PSQGTEDLTW--------------------------IGRLRSFQFFIGPT--------ANSLPTKHDE 735 (998)
Q Consensus 692 ~~L~l~~~~~--~~~~~~~l~~--------------------------l~~L~~L~l~~~~~--------~~~~~~~~~L 735 (998)
+.|+++.+.+ ....+..+.. +++|+.+++..+.. ...+.....+
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 9999988776 4433333332 23333443333210 0001122334
Q ss_pred cEEEEecccCchhhHHH-----hhhcCceeecccccCchhhhhhhhhccc-----cc-----------------------
Q 001897 736 RRVTISGIDLSGEWIGW-----LLTNASSLILNNCWGLDQMLETLVIDSV-----GA----------------------- 782 (998)
Q Consensus 736 ~~L~l~~~~l~~~~~~~-----~~~~L~~L~L~~c~~l~~~~~~~~~~~l-----~~----------------------- 782 (998)
+.+.+.++.++...+.. ..++|++|++++|.-.... +..+ ..
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i-----p~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~ 326 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI-----DREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC-----CCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc-----cchhhhcccccchheehhhcccceeecChhhhhh
Confidence 44444444443322211 1246777777765421111 1111 11
Q ss_pred ---CCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccch
Q 001897 783 ---FASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTY 859 (998)
Q Consensus 783 ---l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 859 (998)
..+|+.|++++|.+.... ....+++|++|++++|.....+|.... .+++|+.|+++++ +++.++..
T Consensus 327 ~~~~~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~~~~~ 395 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIHMV------CPPSPSSFTFLNFTQNVFTDSVFQGCS----TLKRLQTLILQRN-GLKNFFKV 395 (562)
T ss_dssp HHHTCCCSEEEEESSCCCCCC------CCSSCCCCCEEECCSSCCCTTTTTTCC----SCSSCCEEECCSS-CCCBTTHH
T ss_pred hhccCcceEEEccCCCccccc------CccCCCCceEEECCCCccccchhhhhc----ccCCCCEEECCCC-CcCCcccc
Confidence 145777777777654221 115689999999999966554554433 4889999999986 67766543
Q ss_pred hHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCccccccccCCCCCCCccEEEEecCCCCCCC
Q 001897 860 GSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCNLLREL 939 (998)
Q Consensus 860 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~~l 939 (998)
+..+..+++|+.|+++++.--..++.. ....+++|++|++++|..-..++.... ++|+.|++++| .++.+
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~i 465 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDR-------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSI 465 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSC-------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCC
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChh-------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCccc
Confidence 334678999999999988632223211 113679999999999864444444322 79999999998 78899
Q ss_pred CCCCcccCCcceEecchh
Q 001897 940 PLTAQNADTVKEIIGELQ 957 (998)
Q Consensus 940 P~~~~~l~~L~~l~~~~~ 957 (998)
|.++..+++|++|....+
T Consensus 466 p~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 466 PKDVTHLQALQELNVASN 483 (562)
T ss_dssp CTTTTSSCCCSEEECCSS
T ss_pred ChhhcCCCCCCEEECCCC
Confidence 999889999999987543
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.1e-22 Score=231.07 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=124.2
Q ss_pred hhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceE
Q 001897 510 ELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRAL 589 (998)
Q Consensus 510 ~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 589 (998)
...++++++++++|.+..+| .+..+++|++|++++| .+..++ +..+++|++|++++|.+..+| ++++++|++|
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred hHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 34567888888888888776 4667888888888888 556665 577888888888888888775 7788888888
Q ss_pred eecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccc
Q 001897 590 LLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHW 669 (998)
Q Consensus 590 ~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 669 (998)
++++|.... +| ++.+++|++|++++|.++.+| ++.+++|++|++++|..+..++ ++.+++|+.|++++|.+..
T Consensus 112 ~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 112 NCDTNKLTK-LD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp ECCSSCCSC-CC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC
T ss_pred ECCCCcCCe-ec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce
Confidence 888876443 44 788888888888888888774 7788888888888886566663 6778888888888876631
Q ss_pred cccCcccccccccccccccccCceEEEEeecCCC
Q 001897 670 RVKGQEDEGQTNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
+. +..+++|+.|+++.+.+..
T Consensus 185 ------------l~-l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 185 ------------LD-VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp ------------CC-CTTCTTCCEEECCSSCCSC
T ss_pred ------------ec-cccCCCCCEEECcCCcCCe
Confidence 11 5566677777776555443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.6e-22 Score=223.27 Aligned_cols=305 Identities=18% Similarity=0.225 Sum_probs=207.5
Q ss_pred hhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCce
Q 001897 509 TELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRA 588 (998)
Q Consensus 509 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 588 (998)
....++++++++.++.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.+..+| .+..+++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 3456788899999988887764 666888888888888 5666665 688888888888888888775 5888888888
Q ss_pred EeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 589 LLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 589 L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
|++++|. +..++.+..+++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 115 L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 115 LYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred EECcCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc
Confidence 8888876 444555888888888888888544444558888888888888887 555554 678888888888887653
Q ss_pred ccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchh
Q 001897 669 WRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGE 748 (998)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 748 (998)
. +..+..+++|+.|+++.+.+..... +.. +++|+.|++++|.++..
T Consensus 191 ~------------~~~~~~l~~L~~L~l~~n~l~~~~~--~~~--------------------~~~L~~L~l~~n~l~~~ 236 (347)
T 4fmz_A 191 D------------ISPLASLTSLHYFTAYVNQITDITP--VAN--------------------MTRLNSLKIGNNKITDL 236 (347)
T ss_dssp C------------CGGGGGCTTCCEEECCSSCCCCCGG--GGG--------------------CTTCCEEECCSSCCCCC
T ss_pred c------------cccccCCCccceeecccCCCCCCch--hhc--------------------CCcCCEEEccCCccCCC
Confidence 1 1236677777877776655543221 111 22334444444433211
Q ss_pred hHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccccccc
Q 001897 749 WIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNI 828 (998)
Q Consensus 749 ~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 828 (998)
+.+..+++|+.|++++|.+... .....+++|++|++++| .+..+
T Consensus 237 -----------------------------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n-~l~~~ 280 (347)
T 4fmz_A 237 -----------------------------SPLANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSN-QISDI 280 (347)
T ss_dssp -----------------------------GGGTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSS-CCCCC
T ss_pred -----------------------------cchhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCC-ccCCC
Confidence 1145677778888877766543 12445778888888877 44444
Q ss_pred ccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCC
Q 001897 829 SGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKN 908 (998)
Q Consensus 829 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~ 908 (998)
+.. ..+++|+.|++++|+ ++..++ ..+..+++|+.|++++|. +..+.. ...+++|++|++++
T Consensus 281 ~~~-----~~l~~L~~L~L~~n~-l~~~~~--~~l~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 281 SVL-----NNLSQLNSLFLNNNQ-LGNEDM--EVIGGLTNLTTLFLSQNH-ITDIRP---------LASLSKMDSADFAN 342 (347)
T ss_dssp GGG-----GGCTTCSEEECCSSC-CCGGGH--HHHHTCTTCSEEECCSSS-CCCCGG---------GGGCTTCSEESSSC
T ss_pred hhh-----cCCCCCCEEECcCCc-CCCcCh--hHhhccccCCEEEccCCc-cccccC---------hhhhhccceeehhh
Confidence 321 147788888888874 444332 246788999999998886 444332 13688999999988
Q ss_pred Cc
Q 001897 909 LP 910 (998)
Q Consensus 909 ~~ 910 (998)
|+
T Consensus 343 N~ 344 (347)
T 4fmz_A 343 QV 344 (347)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=4.8e-23 Score=233.05 Aligned_cols=305 Identities=16% Similarity=0.181 Sum_probs=188.7
Q ss_pred CCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCee
Q 001897 535 CPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDL 612 (998)
Q Consensus 535 ~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L 612 (998)
+++++.+.+.++ .+..+|..+|..+++|++|++++|.+..+|. .+..+++|++|++++|......| .++++++|++|
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 455666666655 4555666666666777777777776665554 56667777777777666544444 36667777777
Q ss_pred eecCCCCcccChh-hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccC
Q 001897 613 DLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERL 691 (998)
Q Consensus 613 ~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 691 (998)
++++|.++.+|.. +..+++|++|++++|. +..+++..++++++|++|++++|.+.. ..+..+++|
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~l~~L 188 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-------------VDLSLIPSL 188 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB-------------CCGGGCTTC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc-------------ccccccccc
Confidence 7777777766665 3667777777777665 444544446667777777776665521 123445556
Q ss_pred ceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHHhhhcCceeecccccCchhh
Q 001897 692 LVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLDQM 771 (998)
Q Consensus 692 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~~ 771 (998)
+.|+++.+.+... +....++.|++++|.+... +...+++|+.|++++|.-..
T Consensus 189 ~~L~l~~n~l~~~-------------------------~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~n~l~~-- 240 (390)
T 3o6n_A 189 FHANVSYNLLSTL-------------------------AIPIAVEELDASHNSINVV-RGPVNVELTILKLQHNNLTD-- 240 (390)
T ss_dssp SEEECCSSCCSEE-------------------------ECCSSCSEEECCSSCCCEE-ECCCCSSCCEEECCSSCCCC--
T ss_pred ceeeccccccccc-------------------------CCCCcceEEECCCCeeeec-cccccccccEEECCCCCCcc--
Confidence 6665544332210 0112344555555544322 11234567777776653211
Q ss_pred hhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCc
Q 001897 772 LETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCP 851 (998)
Q Consensus 772 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 851 (998)
.+.+..+++|+.|++++|.+...+. .....+++|++|+|++| .+..++.... .+++|+.|++++|
T Consensus 241 -----~~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n-~l~~~~~~~~----~l~~L~~L~L~~n- 305 (390)
T 3o6n_A 241 -----TAWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNN-RLVALNLYGQ----PIPTLKVLDLSHN- 305 (390)
T ss_dssp -----CGGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECCSS-CCCEEECSSS----CCTTCCEEECCSS-
T ss_pred -----cHHHcCCCCccEEECCCCcCCCcCh----hHccccccCCEEECCCC-cCcccCcccC----CCCCCCEEECCCC-
Confidence 1345678888888888887765432 33456788889998888 4455554332 4788999999887
Q ss_pred ccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCcc
Q 001897 852 RLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPK 911 (998)
Q Consensus 852 ~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 911 (998)
+++.++. .+..+++|+.|++++|. +..+ +...+++|++|++++++-
T Consensus 306 ~l~~~~~---~~~~l~~L~~L~L~~N~-i~~~----------~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 306 HLLHVER---NQPQFDRLENLYLDHNS-IVTL----------KLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCCCCGG---GHHHHTTCSEEECCSSC-CCCC----------CCCTTCCCSEEECCSSCE
T ss_pred cceecCc---cccccCcCCEEECCCCc-ccee----------CchhhccCCEEEcCCCCc
Confidence 5666653 24578999999998875 3332 235789999999999763
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=1e-22 Score=233.55 Aligned_cols=366 Identities=18% Similarity=0.136 Sum_probs=224.9
Q ss_pred ccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCC-------------ccEEEcCCCCCCCCChh
Q 001897 513 NSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPA-------------LRVLNLSGTRIHSLPLS 579 (998)
Q Consensus 513 ~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~-------------Lr~L~l~~~~~~~lp~~ 579 (998)
..++.+.+++|.+..+|..+.++++|+.|++++|...+.+|..+ +.+.+ +++|++++|.++.+|..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 56788888888888899888889999999988875555666654 55655 48899999988888763
Q ss_pred hhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccE
Q 001897 580 LLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEI 659 (998)
Q Consensus 580 i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~ 659 (998)
.++|++|++++|.... +|.. +.+|++|++++|.++.+|.. .++|++|++++|. +..+| . ++++++|++
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~-~~~l~~L~~ 157 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-E-LQNSSFLKI 157 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-C-CTTCTTCCE
T ss_pred ---cCCCCEEEccCCcCCc-cccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-c-cCCCCCCCE
Confidence 4788999998876554 6642 37889999999888877643 2688999999887 56677 3 888999999
Q ss_pred EEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEE
Q 001897 660 LDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVT 739 (998)
Q Consensus 660 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~ 739 (998)
|++++|.+.. ++ . ...+|+.|+++.+.+.... .+..+++|+.|++..+.+........+++.|+
T Consensus 158 L~l~~N~l~~-lp----------~---~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~ 221 (454)
T 1jl5_A 158 IDVDNNSLKK-LP----------D---LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLPLSLESIV 221 (454)
T ss_dssp EECCSSCCSC-CC----------C---CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred EECCCCcCcc-cC----------C---CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCcCcccEEE
Confidence 9998887642 11 1 1247888888877766532 46677788888887766544222334788888
Q ss_pred EecccCchhhHH-HhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceee
Q 001897 740 ISGIDLSGEWIG-WLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELH 818 (998)
Q Consensus 740 l~~~~l~~~~~~-~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~ 818 (998)
+++|.+.. .+. ..+++|+.|++++|.-. . + + ..+++|+.|++++|.+...+. .+++|++|+
T Consensus 222 l~~n~l~~-lp~~~~l~~L~~L~l~~N~l~-~----l--~--~~~~~L~~L~l~~N~l~~l~~--------~~~~L~~L~ 283 (454)
T 1jl5_A 222 AGNNILEE-LPELQNLPFLTTIYADNNLLK-T----L--P--DLPPSLEALNVRDNYLTDLPE--------LPQSLTFLD 283 (454)
T ss_dssp CCSSCCSS-CCCCTTCTTCCEEECCSSCCS-S----C--C--SCCTTCCEEECCSSCCSCCCC--------CCTTCCEEE
T ss_pred CcCCcCCc-ccccCCCCCCCEEECCCCcCC-c----c--c--ccccccCEEECCCCcccccCc--------ccCcCCEEE
Confidence 88887663 222 23678888888875321 1 1 1 124788888888887664331 247888888
Q ss_pred ccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhC-CCCCEEEEeccccchhhhccccccCCCCCCC
Q 001897 819 LHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILAL-PNLQEIKVSFCDNLVELFCYYSELNFTPETV 897 (998)
Q Consensus 819 L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l-~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~ 897 (998)
+++|. +..++.. .++|+.|+++++ +++.++ .+ ++|+.|+++++. +..++ ..
T Consensus 284 ls~N~-l~~l~~~-------~~~L~~L~l~~N-~l~~i~-------~~~~~L~~L~Ls~N~-l~~lp-----------~~ 335 (454)
T 1jl5_A 284 VSENI-FSGLSEL-------PPNLYYLNASSN-EIRSLC-------DLPPSLEELNVSNNK-LIELP-----------AL 335 (454)
T ss_dssp CCSSC-CSEESCC-------CTTCCEEECCSS-CCSEEC-------CCCTTCCEEECCSSC-CSCCC-----------CC
T ss_pred CcCCc-cCcccCc-------CCcCCEEECcCC-cCCccc-------CCcCcCCEEECCCCc-ccccc-----------cc
Confidence 88873 4444321 357888888776 344433 23 478888887753 33221 23
Q ss_pred CCccceeecCCCccccccccCCCCCCCccEEEEecCCCCC--CCCCCCccc-------------CCcceEecchh
Q 001897 898 VPNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCNLLR--ELPLTAQNA-------------DTVKEIIGELQ 957 (998)
Q Consensus 898 ~p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~~L~--~lP~~~~~l-------------~~L~~l~~~~~ 957 (998)
+++|++|++++| .++.+|. .+++|++|++++|+-.. .+|.++.++ ++|+.|....+
T Consensus 336 ~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 336 PPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred CCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 678888888886 5666665 47888888888876544 567776666 66777765443
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=6.1e-23 Score=245.20 Aligned_cols=304 Identities=16% Similarity=0.180 Sum_probs=180.3
Q ss_pred CCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCee
Q 001897 535 CPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDL 612 (998)
Q Consensus 535 ~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L 612 (998)
+.+++.+.+.++ .+..+|..+|..+++|++|++++|.+..+|. .++.+++|++|+|++|......| .++++++|++|
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456666666666 5566676666777777777777777776554 67777777777777776555444 36777777777
Q ss_pred eecCCCCcccChh-hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccC
Q 001897 613 DLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERL 691 (998)
Q Consensus 613 ~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 691 (998)
++++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+.. ..++.+++|
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~l~~L 194 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-------------VDLSLIPSL 194 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB-------------CCGGGCTTC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC-------------cChhhhhhh
Confidence 7777777777766 3677777777777776 444554446777777777777776531 124445566
Q ss_pred ceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHHhhhcCceeecccccCchhh
Q 001897 692 LVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLDQM 771 (998)
Q Consensus 692 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~~ 771 (998)
+.|+++.+.+.. +... .+++.|++++|.+... +....++|+.|++++|.-.
T Consensus 195 ~~L~l~~n~l~~-----l~~~--------------------~~L~~L~ls~n~l~~~-~~~~~~~L~~L~L~~n~l~--- 245 (597)
T 3oja_B 195 FHANVSYNLLST-----LAIP--------------------IAVEELDASHNSINVV-RGPVNVELTILKLQHNNLT--- 245 (597)
T ss_dssp SEEECCSSCCSE-----EECC--------------------TTCSEEECCSSCCCEE-ECSCCSCCCEEECCSSCCC---
T ss_pred hhhhcccCcccc-----ccCC--------------------chhheeeccCCccccc-ccccCCCCCEEECCCCCCC---
Confidence 666665443321 1111 2334444444443321 1112345666666554321
Q ss_pred hhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCc
Q 001897 772 LETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCP 851 (998)
Q Consensus 772 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 851 (998)
.++.++.+++|+.|+|++|.+...+. .....+++|+.|+|++| .+..+|.... .+++|+.|++++|
T Consensus 246 ----~~~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N-~l~~l~~~~~----~l~~L~~L~Ls~N- 311 (597)
T 3oja_B 246 ----DTAWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNN-RLVALNLYGQ----PIPTLKVLDLSHN- 311 (597)
T ss_dssp ----CCGGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECTTS-CCCEEECSSS----CCTTCCEEECCSS-
T ss_pred ----CChhhccCCCCCEEECCCCccCCCCH----HHhcCccCCCEEECCCC-CCCCCCcccc----cCCCCcEEECCCC-
Confidence 11344566777777777776654432 33445677777777776 3444443322 3677777777776
Q ss_pred ccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCc
Q 001897 852 RLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLP 910 (998)
Q Consensus 852 ~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~ 910 (998)
.++.++. .+..+++|+.|++++|. +..+ +...+++|+.|+++++|
T Consensus 312 ~l~~i~~---~~~~l~~L~~L~L~~N~-l~~~----------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 312 HLLHVER---NQPQFDRLENLYLDHNS-IVTL----------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCCGG---GHHHHTTCSEEECCSSC-CCCC----------CCCTTCCCSEEECCSSC
T ss_pred CCCccCc---ccccCCCCCEEECCCCC-CCCc----------ChhhcCCCCEEEeeCCC
Confidence 3444443 24567777777777764 2222 22467778888877765
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=7.2e-22 Score=219.70 Aligned_cols=299 Identities=20% Similarity=0.258 Sum_probs=222.8
Q ss_pred ccEEeecCCCccccchhhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCC
Q 001897 493 CKSLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTR 572 (998)
Q Consensus 493 ~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~ 572 (998)
...+...+..+..++.....++++++++++|.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.
T Consensus 46 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNEDN 121 (347)
T ss_dssp CSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTSC
T ss_pred ccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCCc
Confidence 44566666667777766678899999999999998877 778999999999999 6666653 6899999999999999
Q ss_pred CCCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccC
Q 001897 573 IHSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIIC 652 (998)
Q Consensus 573 ~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~ 652 (998)
+..+|. +..+++|++|++++|.....++.+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +.
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~ 196 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LA 196 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GG
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--cc
Confidence 999877 899999999999999888888899999999999999999998876 8899999999999997 666665 78
Q ss_pred CCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCC
Q 001897 653 RLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTK 732 (998)
Q Consensus 653 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 732 (998)
.+++|+.|++++|.+.. ...+..+++|+.|+++.+.+..... +..+++|+
T Consensus 197 ~l~~L~~L~l~~n~l~~------------~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~---------------- 246 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITD------------ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLT---------------- 246 (347)
T ss_dssp GCTTCCEEECCSSCCCC------------CGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCC----------------
T ss_pred CCCccceeecccCCCCC------------CchhhcCCcCCEEEccCCccCCCcc--hhcCCCCC----------------
Confidence 99999999999987631 1237788999999998877665432 34444444
Q ss_pred ccccEEEEecccCchhhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCC
Q 001897 733 HDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLP 812 (998)
Q Consensus 733 ~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~ 812 (998)
.|++++|.++.......+++|+.|++++|.- .. .+.+..+++|+.|++++|.+...+. .....++
T Consensus 247 ----~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~------~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~ 311 (347)
T 4fmz_A 247 ----WLEIGTNQISDINAVKDLTKLKMLNVGSNQI-SD------ISVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLT 311 (347)
T ss_dssp ----EEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CC------CGGGGGCTTCSEEECCSSCCCGGGH----HHHHTCT
T ss_pred ----EEECCCCccCCChhHhcCCCcCEEEccCCcc-CC------ChhhcCCCCCCEEECcCCcCCCcCh----hHhhccc
Confidence 4555555444321112356777777776532 11 1335667788888888877654332 2234567
Q ss_pred CcceeeccccccccccccccccccccCCCccEEEeecCc
Q 001897 813 NLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCP 851 (998)
Q Consensus 813 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 851 (998)
+|++|++++|+ +..++. .. .+++|+.|++++|+
T Consensus 312 ~L~~L~L~~n~-l~~~~~-~~----~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 312 NLTTLFLSQNH-ITDIRP-LA----SLSKMDSADFANQV 344 (347)
T ss_dssp TCSEEECCSSS-CCCCGG-GG----GCTTCSEESSSCC-
T ss_pred cCCEEEccCCc-cccccC-hh----hhhccceeehhhhc
Confidence 88888888875 333333 11 37788888877764
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=5e-22 Score=231.28 Aligned_cols=265 Identities=22% Similarity=0.182 Sum_probs=113.5
Q ss_pred cceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC-ChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeee
Q 001897 537 ETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL-PLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDL 614 (998)
Q Consensus 537 ~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l 614 (998)
+++.|++++| .+..++...|.++++|++|+|++|.+..+ |..+.++++|++|+|++|......+ .+.++++|++|++
T Consensus 33 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4444444444 33333333344445555555555544433 3344445555555555443222222 2444555555555
Q ss_pred cCCCCccc-ChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCce
Q 001897 615 SATSIREL-PRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLV 693 (998)
Q Consensus 615 ~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 693 (998)
++|.+..+ |..+..+++|++|++++|. +..++...+.++++|+.|++++|.+... ....+..+++|+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~l~~l~~L~~ 180 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSI----------PTEALSHLHGLIV 180 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSC----------CHHHHTTCTTCCE
T ss_pred CCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCccc----------ChhHhcccCCCcE
Confidence 55544433 2334445555555554444 2333322244455555555544443210 0122344444455
Q ss_pred EEEEeecCCCCCCCchhHhcccceeEEeecCCC----CCCCCCccccEEEEecccCchhhHHH--hhhcCceeecccccC
Q 001897 694 LSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTA----NSLPTKHDERRVTISGIDLSGEWIGW--LLTNASSLILNNCWG 767 (998)
Q Consensus 694 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~L~~c~~ 767 (998)
|+++.+.+.......+..+++|+.|++..+... .......+|+.|++++|.++...... .+++|+.|+|+++.-
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 544444433332223333333444443332211 11111225666666666655322211 245555555555321
Q ss_pred chhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccc
Q 001897 768 LDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDL 822 (998)
Q Consensus 768 l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 822 (998)
.......+..+++|+.|+|++|.+..... .....+++|+.|+|++|
T Consensus 261 -----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 261 -----STIEGSMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp -----CEECTTSCTTCTTCCEEECCSSCCSEECT----TTBTTCTTCCEEECCSS
T ss_pred -----CccChhhccccccCCEEECCCCccceECH----HHhcCcccCCEEECCCC
Confidence 11122334455555555555555443322 22334555555555555
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.8e-22 Score=228.30 Aligned_cols=305 Identities=18% Similarity=0.150 Sum_probs=232.9
Q ss_pred CCCCccEEEcCCCCCCCCChh-hhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEE
Q 001897 559 GFPALRVLNLSGTRIHSLPLS-LLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRL 635 (998)
Q Consensus 559 ~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L 635 (998)
.+.++++|+++++.+..+|.. +..+++|++|++++|......+ .+..+++|++|++++|.+..+|.. ++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467899999999999999986 6889999999999988665555 699999999999999999988654 8999999999
Q ss_pred eCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhccc
Q 001897 636 NLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRL 715 (998)
Q Consensus 636 ~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 715 (998)
++++|. +..+|.+.++++++|++|++++|.+... ....+..+++|+.|+++.+.+.... +..+
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l--- 185 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERI----------EDDTFQATTSLQNLQLSSNRLTHVD---LSLI--- 185 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBC----------CTTTTSSCTTCCEEECCSSCCSBCC---GGGC---
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCcc----------ChhhccCCCCCCEEECCCCcCCccc---cccc---
Confidence 999997 7788888679999999999999987422 1245778899999999877665432 2222
Q ss_pred ceeEEeecCCCCCCCCCccccEEEEecccCchhhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCC
Q 001897 716 RSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSR 795 (998)
Q Consensus 716 ~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 795 (998)
++++.|++++|.++... ..++|++|+++++.-.. . ....+++|+.|++++|.
T Consensus 186 -----------------~~L~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~-----~---~~~~~~~L~~L~l~~n~ 237 (390)
T 3o6n_A 186 -----------------PSLFHANVSYNLLSTLA---IPIAVEELDASHNSINV-----V---RGPVNVELTILKLQHNN 237 (390)
T ss_dssp -----------------TTCSEEECCSSCCSEEE---CCSSCSEEECCSSCCCE-----E---ECCCCSSCCEEECCSSC
T ss_pred -----------------cccceeecccccccccC---CCCcceEEECCCCeeee-----c---cccccccccEEECCCCC
Confidence 34556666666654321 24689999999864321 1 11346899999999998
Q ss_pred CccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEe
Q 001897 796 SSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVS 875 (998)
Q Consensus 796 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~ 875 (998)
+... .....+++|++|+|++|......+..+. .+++|+.|+++++ +++.++.. ...+++|+.|+++
T Consensus 238 l~~~------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~~---~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 238 LTDT------AWLLNYPGLVEVDLSYNELEKIMYHPFV----KMQRLERLYISNN-RLVALNLY---GQPIPTLKVLDLS 303 (390)
T ss_dssp CCCC------GGGGGCTTCSEEECCSSCCCEEESGGGT----TCSSCCEEECCSS-CCCEEECS---SSCCTTCCEEECC
T ss_pred Cccc------HHHcCCCCccEEECCCCcCCCcChhHcc----ccccCCEEECCCC-cCcccCcc---cCCCCCCCEEECC
Confidence 7643 2356789999999999954443343333 4899999999996 56666542 3578999999999
Q ss_pred ccccchhhhccccccCCCCCCCCCccceeecCCCccccccccCCCCCCCccEEEEecCC
Q 001897 876 FCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLRTICRQKESWQCLEQVKVIKCN 934 (998)
Q Consensus 876 ~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~l~~L~~L~i~~C~ 934 (998)
+|. +..++... ..+++|++|++++++ +..++ ...+++|+.|++++|+
T Consensus 304 ~n~-l~~~~~~~--------~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 304 HNH-LLHVERNQ--------PQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SSC-CCCCGGGH--------HHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CCc-ceecCccc--------cccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 984 55443221 357999999999975 55554 6778999999999986
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=5.1e-22 Score=231.15 Aligned_cols=309 Identities=18% Similarity=0.145 Sum_probs=245.2
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccC-CCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLP-DCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
.+...+..+..+|. .....+++|++++|.+..++ ..+..+++|+.|++++| .+..++...|.++++|++|++++|.+
T Consensus 15 ~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 15 AVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp EEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcC
Confidence 34555666777765 45678999999999999775 46677999999999999 66667666679999999999999999
Q ss_pred CCCChh-hhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccC-hhhhcCcCCcEEeCCCCcccccccccc
Q 001897 574 HSLPLS-LLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELP-RGMENLSNLRRLNLSRTHYLKKIQAGI 650 (998)
Q Consensus 574 ~~lp~~-i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~ 650 (998)
..+|.. +.++++|++|+|++|......| .+.++++|++|++++|.+..++ ..+..+++|++|++++|. +..++...
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 171 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEA 171 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhH
Confidence 999874 7899999999999998776666 6999999999999999998664 568999999999999997 77787767
Q ss_pred cCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCC--
Q 001897 651 ICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANS-- 728 (998)
Q Consensus 651 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-- 728 (998)
+.++++|+.|++.+|.+.... ...+..+++|+.|+++.+......+.......+|+.|++..+.+...
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~----------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIR----------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEEC----------TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred hcccCCCcEEeCCCCcCcEeC----------hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 899999999999998874321 24577889999999987665444333333445899999988766432
Q ss_pred --CCCCccccEEEEecccCchhhHHH--hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCC
Q 001897 729 --LPTKHDERRVTISGIDLSGEWIGW--LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGC 804 (998)
Q Consensus 729 --~~~~~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 804 (998)
+..+++|+.|++++|.++...+.. .+++|+.|+|+++.- ....+..+..+++|+.|+|++|.+...+.
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--- 313 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-----AVVEPYAFRGLNYLRVLNVSGNQLTTLEE--- 313 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC-----SEECTTTBTTCTTCCEEECCSSCCSCCCG---
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc-----ceECHHHhcCcccCCEEECCCCcCceeCH---
Confidence 356789999999999887544332 368999999998642 22345567889999999999998875543
Q ss_pred CCCCCCCCCcceeeccccccc
Q 001897 805 AAHDDLLPNLEELHLHDLAYL 825 (998)
Q Consensus 805 ~~~~~~l~~L~~L~L~~~~~l 825 (998)
.....+++|+.|+|++|+..
T Consensus 314 -~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 314 -SVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp -GGBSCGGGCCEEECCSSCEE
T ss_pred -hHcCCCcccCEEEccCCCcc
Confidence 33456899999999999643
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.8e-21 Score=235.73 Aligned_cols=413 Identities=18% Similarity=0.129 Sum_probs=251.4
Q ss_pred EEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCC
Q 001897 517 RVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCF 595 (998)
Q Consensus 517 ~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~ 595 (998)
+.+.++.+++.+|..+. ++++.|++++| .+..++...|.++++|++|+|++|.++.+|+ .|.+|++|++|+|++|.
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 45566667788887653 57899999999 7888988888999999999999999999876 68999999999999997
Q ss_pred CCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCcccc-cccccccCCCCCccEEEcccCccccccc
Q 001897 596 YLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLK-KIQAGIICRLSSLEILDMTLSDYHWRVK 672 (998)
Q Consensus 596 ~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~-~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 672 (998)
.....+ .+.++++|++|++++|+++.+|.. ++++++|++|++++|.... .+|.. ++.+++|++|++++|.+....+
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccccccc
Confidence 544444 589999999999999999999875 8999999999999998332 23444 8899999999999998754322
Q ss_pred Ccccc----------------ccc-ccccc-------------------------cccccCceEEEEeecC------CCC
Q 001897 673 GQEDE----------------GQT-NFEEL-------------------------GCLERLLVLSIRLENI------PSQ 704 (998)
Q Consensus 673 ~~~~~----------------~~~-~~~~l-------------------------~~l~~L~~L~l~~~~~------~~~ 704 (998)
..... ... ..... ..+..++...+..... ...
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 11000 000 00000 0111112111111110 000
Q ss_pred CCCchhHhcccceeEEeec---------------------------CC--CCCCCCCccccEEEEecccCchhhHHHhhh
Q 001897 705 GTEDLTWIGRLRSFQFFIG---------------------------PT--ANSLPTKHDERRVTISGIDLSGEWIGWLLT 755 (998)
Q Consensus 705 ~~~~l~~l~~L~~L~l~~~---------------------------~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 755 (998)
....+.....+....+... .. ...+.....++.|++.++.+.... ...+.
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~ 349 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP-TLKLK 349 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC-CCBCT
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcC-cccch
Confidence 1111122222222221110 00 001123346788888887654321 12245
Q ss_pred cCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCC---------------------CCCCCCCCCCc
Q 001897 756 NASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGG---------------------CAAHDDLLPNL 814 (998)
Q Consensus 756 ~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~---------------------~~~~~~~l~~L 814 (998)
.|+.+.+...... .......+++|+.|++++|......... .......+++|
T Consensus 350 ~L~~l~l~~n~~~-------~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L 422 (635)
T 4g8a_A 350 SLKRLTFTSNKGG-------NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQL 422 (635)
T ss_dssp TCCEEEEESCCSC-------CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTC
T ss_pred hhhhcccccccCC-------CCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccc
Confidence 5666666543221 1122334566666666666543211000 01122345556
Q ss_pred ceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCC
Q 001897 815 EELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTP 894 (998)
Q Consensus 815 ~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~ 894 (998)
+.+++.++......+... ...+++++.++++.+ .+...... .+..++.|+.|+++++..+..+... .
T Consensus 423 ~~l~l~~~~~~~~~~~~~---~~~l~~l~~l~ls~n-~l~~~~~~--~~~~~~~L~~L~Ls~N~~~~~~~~~-------~ 489 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHT-HTRVAFNG--IFNGLSSLEVLKMAGNSFQENFLPD-------I 489 (635)
T ss_dssp CEEECTTSEEESTTSSCT---TTTCTTCCEEECTTS-CCEECCTT--TTTTCTTCCEEECTTCEEGGGEECS-------C
T ss_pred cchhhhhccccccccccc---ccccccccccccccc-cccccccc--ccccchhhhhhhhhhcccccccCch-------h
Confidence 666665553333322111 013556666666654 23333221 3456788888888877655443211 1
Q ss_pred CCCCCccceeecCCCcccccc-ccCCCCCCCccEEEEecCCCCCCCC-CCCcccCCcceEecch
Q 001897 895 ETVVPNLRNLELKNLPKLRTI-CRQKESWQCLEQVKVIKCNLLRELP-LTAQNADTVKEIIGEL 956 (998)
Q Consensus 895 ~~~~p~L~~L~l~~~~~L~~i-~~~~~~l~~L~~L~i~~C~~L~~lP-~~~~~l~~L~~l~~~~ 956 (998)
...+++|++|+|++|. ++.+ +..+..+++|++|++++| +++.+| ..+..+++|+.|+...
T Consensus 490 ~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 490 FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCC
Confidence 1467899999999974 5555 556788999999999997 577775 4578889999998754
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=8.5e-21 Score=217.54 Aligned_cols=295 Identities=16% Similarity=0.112 Sum_probs=132.4
Q ss_pred ceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCC
Q 001897 515 LKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDC 594 (998)
Q Consensus 515 l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 594 (998)
+++++++++.+..+|.. .++++.|++++| .+..+|. .+++|++|++++|.+..+|... ++|++|++++|
T Consensus 73 l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n-~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n 141 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL---PPHLESLVASCN-SLTELPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNN 141 (454)
T ss_dssp CSEEECTTSCCSCCCSC---CTTCSEEECCSS-CCSSCCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSS
T ss_pred CCEEEecCCccccCCCC---cCCCCEEEccCC-cCCcccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcCC
Confidence 44455555544444431 234455555444 2333432 1244555555555544443211 34555555554
Q ss_pred CCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCc
Q 001897 595 FYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQ 674 (998)
Q Consensus 595 ~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 674 (998)
... .+|+++++++|++|++++|.++.+|..+ .+|++|++++|. +..+| . ++++++|++|++++|.+.. ++
T Consensus 142 ~l~-~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~-~~~l~~L~~L~l~~N~l~~-l~-- 211 (454)
T 1jl5_A 142 QLE-KLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-E-LQNLPFLTAIYADNNSLKK-LP-- 211 (454)
T ss_dssp CCS-SCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-C-CTTCTTCCEEECCSSCCSS-CC--
T ss_pred CCC-CCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-c-ccCCCCCCEEECCCCcCCc-CC--
Confidence 332 2444555555555555555555444332 245555555554 33344 2 4555555555555544321 00
Q ss_pred ccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHHhh
Q 001897 675 EDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGWLL 754 (998)
Q Consensus 675 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 754 (998)
.+ .++|+.|+++.+.+.... .+..+++|+.|++..+.+........+++.|++++|.++. .+ ..+
T Consensus 212 ---------~~--~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~-~~~ 276 (454)
T 1jl5_A 212 ---------DL--PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LP-ELP 276 (454)
T ss_dssp ---------CC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CC-CCC
T ss_pred ---------CC--cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cC-ccc
Confidence 00 124444444444333111 1333334444444333222211112455666666665543 11 123
Q ss_pred hcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccccccccccccc
Q 001897 755 TNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGY 834 (998)
Q Consensus 755 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 834 (998)
++|+.|++++|.-. .. +. -.++|+.|++++|.+...+. ..++|++|++++|. +..+|.
T Consensus 277 ~~L~~L~ls~N~l~-~l------~~--~~~~L~~L~l~~N~l~~i~~--------~~~~L~~L~Ls~N~-l~~lp~---- 334 (454)
T 1jl5_A 277 QSLTFLDVSENIFS-GL------SE--LPPNLYYLNASSNEIRSLCD--------LPPSLEELNVSNNK-LIELPA---- 334 (454)
T ss_dssp TTCCEEECCSSCCS-EE------SC--CCTTCCEEECCSSCCSEECC--------CCTTCCEEECCSSC-CSCCCC----
T ss_pred CcCCEEECcCCccC-cc------cC--cCCcCCEEECcCCcCCcccC--------CcCcCCEEECCCCc-cccccc----
Confidence 55666666654211 00 01 12466677776666543210 12466677776663 333432
Q ss_pred ccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEecc
Q 001897 835 LGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFC 877 (998)
Q Consensus 835 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c 877 (998)
.+++|+.|++++| +++.++. .+++|+.|+++++
T Consensus 335 ---~~~~L~~L~L~~N-~l~~lp~------~l~~L~~L~L~~N 367 (454)
T 1jl5_A 335 ---LPPRLERLIASFN-HLAEVPE------LPQNLKQLHVEYN 367 (454)
T ss_dssp ---CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS
T ss_pred ---cCCcCCEEECCCC-ccccccc------hhhhccEEECCCC
Confidence 1456666666665 4554443 2456666666654
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.9e-21 Score=223.19 Aligned_cols=182 Identities=18% Similarity=0.197 Sum_probs=151.0
Q ss_pred ccEEeecCCCccccchhhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCC
Q 001897 493 CKSLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTR 572 (998)
Q Consensus 493 ~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~ 572 (998)
...+...+..+.+++.....+++++|++++|.+..+| +..+++|+.|++++| .+..++ +..+++|++|++++|.
T Consensus 44 L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 44 LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp CCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSSC
T ss_pred CCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCCc
Confidence 3455556666666665566789999999999999886 677999999999999 566665 6889999999999999
Q ss_pred CCCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCC-CCcccChhhhcCcCCcEEeCCCCccccccccccc
Q 001897 573 IHSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSAT-SIRELPRGMENLSNLRRLNLSRTHYLKKIQAGII 651 (998)
Q Consensus 573 ~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l 651 (998)
+..+| ++.+++|++|++++|.... ++ ++.+++|++|++++| .+..+ .++.+++|++|++++|. +..+| +
T Consensus 118 l~~l~--~~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~---l 187 (457)
T 3bz5_A 118 LTKLD--VSQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD---V 187 (457)
T ss_dssp CSCCC--CTTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC---C
T ss_pred CCeec--CCCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec---c
Confidence 99986 8999999999999987544 43 889999999999999 56666 47889999999999997 66776 7
Q ss_pred CCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCC
Q 001897 652 CRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 652 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
+.+++|+.|++++|.+.. + .++.+++|+.|+++.+.+..
T Consensus 188 ~~l~~L~~L~l~~N~l~~------------~-~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITK------------L-DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp TTCTTCCEEECCSSCCSC------------C-CCTTCTTCSEEECCSSCCSC
T ss_pred ccCCCCCEEECcCCcCCe------------e-ccccCCCCCEEECcCCcccc
Confidence 899999999999998742 1 37778899999998777655
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2e-21 Score=232.00 Aligned_cols=303 Identities=16% Similarity=0.160 Sum_probs=237.5
Q ss_pred cccceEEEeecCCccccCCCCC-CCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceE
Q 001897 512 VNSLKRVSFMNNSITKLPDCKV-HCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRAL 589 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~l~~~~~-~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L 589 (998)
..+++.+++.++.+..+|...+ .+++|++|++++| .+..++...|..+++|++|+|++|.+..+|. .++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 5688999999999999988654 5899999999998 6777777678999999999999999998876 57999999999
Q ss_pred eecCCCCCCCCcc-ccCCCCCCeeeecCCCCcccCh-hhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcc
Q 001897 590 LLRDCFYLEDLPA-LGGLTKLQDLDLSATSIRELPR-GMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 590 ~L~~~~~~~~lp~-i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
+|++|......+. ++++++|++|++++|.+..+|. .++.+++|++|++++|. +..++ ++.+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcc
Confidence 9999976544444 7999999999999999997765 58999999999999997 56665 56789999999998866
Q ss_pred cccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCch
Q 001897 668 HWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSG 747 (998)
Q Consensus 668 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ 747 (998)
. .+....+|+.|+++.+.+..... ....+|+.|++++|.+++
T Consensus 205 ~---------------~l~~~~~L~~L~ls~n~l~~~~~-----------------------~~~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 205 S---------------TLAIPIAVEELDASHNSINVVRG-----------------------PVNVELTILKLQHNNLTD 246 (597)
T ss_dssp S---------------EEECCTTCSEEECCSSCCCEEEC-----------------------SCCSCCCEEECCSSCCCC
T ss_pred c---------------cccCCchhheeeccCCccccccc-----------------------ccCCCCCEEECCCCCCCC
Confidence 2 34455678888887665432111 011367788888888776
Q ss_pred hhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccc
Q 001897 748 EWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGN 827 (998)
Q Consensus 748 ~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 827 (998)
......+++|+.|+|++|.- ....+..++.+++|+.|+|++|.+...+. ....+|+|+.|+|++|. +..
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~Ls~N~-l~~ 315 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNEL-----EKIMYHPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSHNH-LLH 315 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCC-----CEEESGGGTTCSSCCEEECTTSCCCEEEC-----SSSCCTTCCEEECCSSC-CCC
T ss_pred ChhhccCCCCCEEECCCCcc-----CCCCHHHhcCccCCCEEECCCCCCCCCCc-----ccccCCCCcEEECCCCC-CCc
Confidence 43333578999999998643 22345567889999999999998876542 33568999999999994 456
Q ss_pred cccccccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccc
Q 001897 828 ISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCD 878 (998)
Q Consensus 828 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~ 878 (998)
+|..+. .+++|+.|++++|+ +..++ +..+++|+.|++++++
T Consensus 316 i~~~~~----~l~~L~~L~L~~N~-l~~~~-----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 316 VERNQP----QFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CGGGHH----HHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECCSSC
T ss_pred cCcccc----cCCCCCEEECCCCC-CCCcC-----hhhcCCCCEEEeeCCC
Confidence 665443 48999999999974 66664 3468999999999865
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.1e-19 Score=200.30 Aligned_cols=291 Identities=17% Similarity=0.165 Sum_probs=134.1
Q ss_pred cceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeee
Q 001897 537 ETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDL 614 (998)
Q Consensus 537 ~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l 614 (998)
+++.++++++ .+..+|..+ .++|++|++++|.+..++. .+.++++|++|++++|......| .++++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3444555444 344444433 2455555555555554432 45555555555555554433334 3555555555555
Q ss_pred cCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceE
Q 001897 615 SATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVL 694 (998)
Q Consensus 615 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 694 (998)
++|.++.+|..+. ++|++|++++|. +..+|...+.++++|+.|++++|.+... ......+..+ +|+.|
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS--------GFEPGAFDGL-KLNYL 177 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG--------GSCTTSSCSC-CCSCC
T ss_pred CCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC--------CCCcccccCC-ccCEE
Confidence 5555555555443 455555555554 4444444455555555555555544210 0011223333 45555
Q ss_pred EEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHH--hhhcCceeecccccCchhhh
Q 001897 695 SIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGW--LLTNASSLILNNCWGLDQML 772 (998)
Q Consensus 695 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~L~~c~~l~~~~ 772 (998)
+++.+.+....... .++|+.|++ ++|.++...+.. .+++|+.|+++++.-
T Consensus 178 ~l~~n~l~~l~~~~---~~~L~~L~l--------------------~~n~i~~~~~~~l~~l~~L~~L~L~~N~l----- 229 (332)
T 2ft3_A 178 RISEAKLTGIPKDL---PETLNELHL--------------------DHNKIQAIELEDLLRYSKLYRLGLGHNQI----- 229 (332)
T ss_dssp BCCSSBCSSCCSSS---CSSCSCCBC--------------------CSSCCCCCCTTSSTTCTTCSCCBCCSSCC-----
T ss_pred ECcCCCCCccCccc---cCCCCEEEC--------------------CCCcCCccCHHHhcCCCCCCEEECCCCcC-----
Confidence 55444433211110 022333333 222222211111 134445555544321
Q ss_pred hhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccc-ccc--ccccCCCccEEEeec
Q 001897 773 ETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGL-VGY--LGLRFSKLRLMEVTQ 849 (998)
Q Consensus 773 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~--~~~~~~~L~~L~l~~ 849 (998)
....+..+..+++|+.|++++|.+...+ .....+++|++|++++|. ++.++.. +.. ....++.|+.|++.+
T Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~l~~lp-----~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 230 RMIENGSLSFLPTLRELHLDNNKLSRVP-----AGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCCCBCC-----TTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred CcCChhHhhCCCCCCEEECCCCcCeecC-----hhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeec
Confidence 1112223455667777777777665433 223456677777777663 3343321 111 011245677777777
Q ss_pred CcccccccchhHHHhhCCCCCEEEEeccc
Q 001897 850 CPRLKYLLTYGSFILALPNLQEIKVSFCD 878 (998)
Q Consensus 850 c~~L~~l~~~~~~~~~l~~L~~L~l~~c~ 878 (998)
++- ......+..+..+++|+.++++++.
T Consensus 304 N~~-~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 304 NPV-PYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSS-CGGGSCGGGGTTBCCSTTEEC----
T ss_pred Ccc-cccccCcccccccchhhhhhccccc
Confidence 652 2111222245567788888777653
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=9e-20 Score=202.98 Aligned_cols=276 Identities=17% Similarity=0.124 Sum_probs=163.7
Q ss_pred EEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCC-hhhhcccCCceEeecCCCC
Q 001897 518 VSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLP-LSLLQLHNCRALLLRDCFY 596 (998)
Q Consensus 518 l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~ 596 (998)
.+.+++.+..+|..+. ++++.|++++| .+..++...|.++++|++|++++|.+..++ ..+.++++|++|++++|..
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCccccccccc--ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 5556666666766543 46777777776 455666655677777777777777777654 4577777777777777654
Q ss_pred CCCCcc-ccCCCCCCeeeecCCCCcccCh--hhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccC
Q 001897 597 LEDLPA-LGGLTKLQDLDLSATSIRELPR--GMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKG 673 (998)
Q Consensus 597 ~~~lp~-i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 673 (998)
....+. ++++++|++|++++|.++.+|. .+..+++|++|++++|..+..++...++++++|++|++++|.+...
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--- 189 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY--- 189 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE---
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc---
Confidence 433333 6777777777777777777766 5667777777777777545556554467777777777777765322
Q ss_pred cccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHHh
Q 001897 674 QEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGWL 753 (998)
Q Consensus 674 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 753 (998)
....+..+++|+.|+++.+.+.......+..+++|+.|++..+.+....... ......
T Consensus 190 -------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------------l~~~~~ 247 (353)
T 2z80_A 190 -------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE---------------LSTGET 247 (353)
T ss_dssp -------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------C
T ss_pred -------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc---------------cccccc
Confidence 1245666677777777666554322222333455555555444332211000 000001
Q ss_pred hhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccccc
Q 001897 754 LTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLG 826 (998)
Q Consensus 754 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 826 (998)
...++.+++.++.-..+.+.. .+..+..+++|+.|++++|.+...+. .....+++|++|+|++|+...
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~-l~~~l~~l~~L~~L~Ls~N~l~~i~~----~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLKSVPD----GIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHH-HHHHHHTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhccccccccccCcchhh-hHHHHhcccCCCEEECCCCCCCccCH----HHHhcCCCCCEEEeeCCCccC
Confidence 223334444433222222221 23345678899999999998775543 223567899999999885443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=2.3e-19 Score=197.77 Aligned_cols=150 Identities=21% Similarity=0.316 Sum_probs=87.3
Q ss_pred cceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeee
Q 001897 537 ETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDL 614 (998)
Q Consensus 537 ~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l 614 (998)
+++.++++++ .+..+|..+ .+.|++|++++|.+..+|. .+.++++|++|++++|......| .++++++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4555555554 444555433 2456666666666666654 56666667777776665544445 4666667777777
Q ss_pred cCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceE
Q 001897 615 SATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVL 694 (998)
Q Consensus 615 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 694 (998)
++|.++.+|..+. ++|++|++++|. +..++...+.++++|+.|++++|.+... ......+..+++|+.|
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS--------GIENGAFQGMKKLSYI 176 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG--------GBCTTGGGGCTTCCEE
T ss_pred CCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCcc--------CcChhhccCCCCcCEE
Confidence 6666666666544 566777776665 4455554466667777777666654210 0112345556666666
Q ss_pred EEEeecC
Q 001897 695 SIRLENI 701 (998)
Q Consensus 695 ~l~~~~~ 701 (998)
+++.+.+
T Consensus 177 ~l~~n~l 183 (330)
T 1xku_A 177 RIADTNI 183 (330)
T ss_dssp ECCSSCC
T ss_pred ECCCCcc
Confidence 6554443
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=6.8e-20 Score=200.98 Aligned_cols=152 Identities=28% Similarity=0.447 Sum_probs=134.5
Q ss_pred ccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeec
Q 001897 513 NSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLR 592 (998)
Q Consensus 513 ~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 592 (998)
..++.|++++|.+..+|..+..+++|++|++++| .+..+|..+ ..+++|++|++++|.+..+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 5788999999999999998888999999999998 555888654 88999999999999999999999999999999999
Q ss_pred CCCCCCCCc-cccC---------CCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEc
Q 001897 593 DCFYLEDLP-ALGG---------LTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDM 662 (998)
Q Consensus 593 ~~~~~~~lp-~i~~---------l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l 662 (998)
+|.....+| .++. +++|++|++++|.++.+|..++++++|++|++++|. +..+|.. ++.+++|++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEEC
Confidence 998888888 4554 999999999999999999999999999999999997 6677776 889999999999
Q ss_pred ccCccc
Q 001897 663 TLSDYH 668 (998)
Q Consensus 663 ~~~~~~ 668 (998)
++|.+.
T Consensus 237 s~n~~~ 242 (328)
T 4fcg_A 237 RGCTAL 242 (328)
T ss_dssp TTCTTC
T ss_pred cCCcch
Confidence 887663
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.4e-19 Score=198.59 Aligned_cols=90 Identities=20% Similarity=0.380 Sum_probs=76.6
Q ss_pred CCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeC
Q 001897 559 GFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNL 637 (998)
Q Consensus 559 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 637 (998)
....+++|++++|.+..+|..++++++|++|+|++|... .+| .++++++|++|++++|.++.+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 356788899999988889888888999999999988765 666 688899999999999988899989999999999999
Q ss_pred CCCccccccccc
Q 001897 638 SRTHYLKKIQAG 649 (998)
Q Consensus 638 ~~~~~l~~~p~~ 649 (998)
++|..+..+|..
T Consensus 158 ~~n~~~~~~p~~ 169 (328)
T 4fcg_A 158 RACPELTELPEP 169 (328)
T ss_dssp EEETTCCCCCSC
T ss_pred CCCCCccccChh
Confidence 988777777765
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=5.3e-20 Score=200.63 Aligned_cols=249 Identities=15% Similarity=0.182 Sum_probs=161.0
Q ss_pred ccceEEEeecCCcc---ccCCCCCCCCcceEEEecC-CCCCCCCChhhhcCCCCccEEEcCCCCCC-CCChhhhcccCCc
Q 001897 513 NSLKRVSFMNNSIT---KLPDCKVHCPETLTLLLQG-NFPLGRVPEKFLDGFPALRVLNLSGTRIH-SLPLSLLQLHNCR 587 (998)
Q Consensus 513 ~~l~~l~l~~~~~~---~l~~~~~~~~~l~~L~l~~-~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~ 587 (998)
.++++++++++.+. .+|..+..+++|++|++++ |.....+|.. +.++++|++|++++|.+. .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 46788888888776 4777777788888888874 5444456654 477888888888888877 6777788888888
Q ss_pred eEeecCCCCCCCCc-cccCCCCCCeeeecCCCCc-ccChhhhcCc-CCcEEeCCCCcccccccccccCCCCCccEEEccc
Q 001897 588 ALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIR-ELPRGMENLS-NLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTL 664 (998)
Q Consensus 588 ~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~ 664 (998)
+|++++|.....+| .+..+++|++|++++|.++ .+|..++.+. +|++|++++|.....+|.. ++.++ |+.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence 88888877665666 5778888888888888777 7777788777 7888888887744455554 66776 88888877
Q ss_pred CcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEeccc
Q 001897 665 SDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGID 744 (998)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~ 744 (998)
|.+... ....+..+++|+.|+++.+.+....+. +..
T Consensus 207 N~l~~~----------~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------~~~------------- 242 (313)
T 1ogq_A 207 NMLEGD----------ASVLFGSDKNTQKIHLAKNSLAFDLGK---------------------VGL------------- 242 (313)
T ss_dssp SEEEEC----------CGGGCCTTSCCSEEECCSSEECCBGGG---------------------CCC-------------
T ss_pred CcccCc----------CCHHHhcCCCCCEEECCCCceeeecCc---------------------ccc-------------
Confidence 765322 124455666666666654443221100 111
Q ss_pred CchhhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccc
Q 001897 745 LSGEWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAY 824 (998)
Q Consensus 745 l~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 824 (998)
+++|++|++++|.-. ...+..+..+++|+.|++++|.+...+. . ...+++|+.|++++|+.
T Consensus 243 ---------l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~ip----~-~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 243 ---------SKNLNGLDLRNNRIY-----GTLPQGLTQLKFLHSLNVSFNNLCGEIP----Q-GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp ---------CTTCCEEECCSSCCE-----ECCCGGGGGCTTCCEEECCSSEEEEECC----C-STTGGGSCGGGTCSSSE
T ss_pred ---------cCCCCEEECcCCccc-----CcCChHHhcCcCCCEEECcCCcccccCC----C-CccccccChHHhcCCCC
Confidence 233344444332211 1123345667778888888877653322 1 14577788888887765
Q ss_pred ccc
Q 001897 825 LGN 827 (998)
Q Consensus 825 l~~ 827 (998)
+..
T Consensus 304 lc~ 306 (313)
T 1ogq_A 304 LCG 306 (313)
T ss_dssp EES
T ss_pred ccC
Confidence 543
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.4e-19 Score=199.59 Aligned_cols=289 Identities=17% Similarity=0.161 Sum_probs=208.6
Q ss_pred CCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCccc-ChhhhcCcCCcEEeCC
Q 001897 561 PALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIREL-PRGMENLSNLRRLNLS 638 (998)
Q Consensus 561 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~ 638 (998)
.++++++++++.+..+|..+. ++|++|++++|......| .+.++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 368999999999999998774 799999999988665555 699999999999999999977 6679999999999999
Q ss_pred CCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCC--CCCCchhHhcccc
Q 001897 639 RTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPS--QGTEDLTWIGRLR 716 (998)
Q Consensus 639 ~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~ 716 (998)
+|. +..+|.. +. ++|++|++++|.+... ....+..+++|+.|+++.+.+.. ..+..
T Consensus 111 ~n~-l~~l~~~-~~--~~L~~L~l~~n~i~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------- 168 (332)
T 2ft3_A 111 KNH-LVEIPPN-LP--SSLVELRIHDNRIRKV----------PKGVFSGLRNMNCIEMGGNPLENSGFEPGA-------- 168 (332)
T ss_dssp SSC-CCSCCSS-CC--TTCCEEECCSSCCCCC----------CSGGGSSCSSCCEEECCSCCCBGGGSCTTS--------
T ss_pred CCc-CCccCcc-cc--ccCCEEECCCCccCcc----------CHhHhCCCccCCEEECCCCccccCCCCccc--------
Confidence 997 7788876 33 8999999999987421 12347788999999988766542 11111
Q ss_pred eeEEeecCCCCCCCCCccccEEEEecccCchhhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCC
Q 001897 717 SFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRS 796 (998)
Q Consensus 717 ~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 796 (998)
+... +|+.|++++|.++. .+....++|++|+++++.- ....+..+..+++|+.|++++|.+
T Consensus 169 ------------~~~l-~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i-----~~~~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 169 ------------FDGL-KLNYLRISEAKLTG-IPKDLPETLNELHLDHNKI-----QAIELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp ------------SCSC-CCSCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCC-----CCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred ------------ccCC-ccCEEECcCCCCCc-cCccccCCCCEEECCCCcC-----CccCHHHhcCCCCCCEEECCCCcC
Confidence 1122 45666666666554 2233457899999998642 223445678899999999999988
Q ss_pred ccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccchhHHH-----hhCCCCCE
Q 001897 797 SLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFI-----LALPNLQE 871 (998)
Q Consensus 797 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~-----~~l~~L~~ 871 (998)
...+. .....+++|++|+|++| .+..+|..+. .+++|+.|+++++ .++.++... +. ...+.|+.
T Consensus 230 ~~~~~----~~~~~l~~L~~L~L~~N-~l~~lp~~l~----~l~~L~~L~l~~N-~l~~~~~~~-~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 230 RMIEN----GSLSFLPTLRELHLDNN-KLSRVPAGLP----DLKLLQVVYLHTN-NITKVGVND-FCPVGFGVKRAYYNG 298 (332)
T ss_dssp CCCCT----TGGGGCTTCCEEECCSS-CCCBCCTTGG----GCTTCCEEECCSS-CCCBCCTTS-SSCSSCCSSSCCBSE
T ss_pred CcCCh----hHhhCCCCCCEEECCCC-cCeecChhhh----cCccCCEEECCCC-CCCccChhH-ccccccccccccccc
Confidence 75543 23457899999999999 5557776543 4899999999986 577665432 11 12578999
Q ss_pred EEEeccccch-hhhccccccCCCCCCCCCccceeecCCCc
Q 001897 872 IKVSFCDNLV-ELFCYYSELNFTPETVVPNLRNLELKNLP 910 (998)
Q Consensus 872 L~l~~c~~L~-~l~~~~~~~~~~~~~~~p~L~~L~l~~~~ 910 (998)
|++++++-.. .+... ....+++|+.|+++++.
T Consensus 299 L~l~~N~~~~~~~~~~-------~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 299 ISLFNNPVPYWEVQPA-------TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSSSCGGGSCGG-------GGTTBCCSTTEEC----
T ss_pred eEeecCcccccccCcc-------cccccchhhhhhccccc
Confidence 9999887321 11110 11357899999998864
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=1.6e-18 Score=191.02 Aligned_cols=287 Identities=15% Similarity=0.176 Sum_probs=144.3
Q ss_pred cceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC-ChhhhcccCCceEeec
Q 001897 514 SLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL-PLSLLQLHNCRALLLR 592 (998)
Q Consensus 514 ~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~ 592 (998)
+++.+++.++.+..+|..+. +.++.|++++| .+..++...|.++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 34455555555555554332 45555555555 44445544455566666666666655544 4455566666666666
Q ss_pred CCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCcccc-cccccccCCCCCccEEEcccCcccc
Q 001897 593 DCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLK-KIQAGIICRLSSLEILDMTLSDYHW 669 (998)
Q Consensus 593 ~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~-~~p~~~l~~l~~L~~L~l~~~~~~~ 669 (998)
+|... .+| .+. ++|++|++++|.+..++.. +.++++|++|++++|.... .+....+.++++|++|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 55432 333 222 4566666666655555443 5555666666665554211 1222225555666666665554421
Q ss_pred cccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCC----CCCCCccccEEEEecccC
Q 001897 670 RVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTAN----SLPTKHDERRVTISGIDL 745 (998)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~l 745 (998)
++ ..+ .++|+.|+++.+.+....+..+..+++|+.|++..+.+.. .+..+++|+.|++++|.+
T Consensus 186 -l~----------~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 186 -IP----------QGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp -CC----------SSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred -CC----------ccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 00 011 1455555555554444444445555556666555443322 122233444444444443
Q ss_pred chhhHHHhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCC--CCCCCCCcceeeccccc
Q 001897 746 SGEWIGWLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAA--HDDLLPNLEELHLHDLA 823 (998)
Q Consensus 746 ~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~ 823 (998)
+. .+..+..+++|+.|++++|.+...+...+.. .....++|+.|++++|+
T Consensus 253 ~~----------------------------lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 253 VK----------------------------VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SS----------------------------CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred cc----------------------------CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 21 2234567788888888888877655433211 11235788888888886
Q ss_pred ccc-ccccccccccccCCCccEEEeecC
Q 001897 824 YLG-NISGLVGYLGLRFSKLRLMEVTQC 850 (998)
Q Consensus 824 ~l~-~~~~~~~~~~~~~~~L~~L~l~~c 850 (998)
... .++.. .-..++.|+.++++++
T Consensus 305 ~~~~~i~~~---~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 305 VQYWEIQPS---TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGSCGG---GGTTCCCGGGEEC---
T ss_pred ccccccCcc---ccccccceeEEEeccc
Confidence 432 11111 0113566777776653
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=9.8e-20 Score=198.51 Aligned_cols=250 Identities=16% Similarity=0.214 Sum_probs=170.1
Q ss_pred CcceEEEecCCCCCC--CCChhhhcCCCCccEEEcCC-CCCC-CCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCC
Q 001897 536 PETLTLLLQGNFPLG--RVPEKFLDGFPALRVLNLSG-TRIH-SLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQ 610 (998)
Q Consensus 536 ~~l~~L~l~~~~~~~--~l~~~~~~~l~~Lr~L~l~~-~~~~-~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~ 610 (998)
.+++.|++++|.... .+|.. +.++++|++|++++ |.+. .+|..++++++|++|++++|.....+| .+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578888888884444 56654 47889999999985 7766 778888999999999999888776777 588899999
Q ss_pred eeeecCCCCc-ccChhhhcCcCCcEEeCCCCcccccccccccCCCC-CccEEEcccCcccccccCccccccccccccccc
Q 001897 611 DLDLSATSIR-ELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLS-SLEILDMTLSDYHWRVKGQEDEGQTNFEELGCL 688 (998)
Q Consensus 611 ~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 688 (998)
+|++++|.+. .+|..+..+++|++|++++|.....+|.. +++++ +|+.|++++|.+....+ ..+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~----------~~~~~l 197 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP----------PTFANL 197 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC----------GGGGGC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC----------hHHhCC
Confidence 9999999888 78888889999999999988854477776 77887 89999998887643222 344445
Q ss_pred ccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHHhhhcCceeecccccCc
Q 001897 689 ERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGL 768 (998)
Q Consensus 689 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l 768 (998)
+ |+.|+++.+.+....+. .+..+++|+.|++++|.++.
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~--------------------~~~~l~~L~~L~L~~N~l~~--------------------- 235 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASV--------------------LFGSDKNTQKIHLAKNSLAF--------------------- 235 (313)
T ss_dssp C-CSEEECCSSEEEECCGG--------------------GCCTTSCCSEEECCSSEECC---------------------
T ss_pred c-ccEEECcCCcccCcCCH--------------------HHhcCCCCCEEECCCCceee---------------------
Confidence 4 66666655443322111 11222233334443333221
Q ss_pred hhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEee
Q 001897 769 DQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVT 848 (998)
Q Consensus 769 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 848 (998)
.++.+..+++|+.|++++|.+.... +.....+++|++|+|++|...+.+|.. . .+++|+.+++.
T Consensus 236 -------~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~----~l~~L~~l~l~ 299 (313)
T 1ogq_A 236 -------DLGKVGLSKNLNGLDLRNNRIYGTL----PQGLTQLKFLHSLNVSFNNLCGEIPQG-G----NLQRFDVSAYA 299 (313)
T ss_dssp -------BGGGCCCCTTCCEEECCSSCCEECC----CGGGGGCTTCCEEECCSSEEEEECCCS-T----TGGGSCGGGTC
T ss_pred -------ecCcccccCCCCEEECcCCcccCcC----ChHHhcCcCCCEEECcCCcccccCCCC-c----cccccChHHhc
Confidence 1122466788888888888776332 234456788888888888666566653 1 36677777777
Q ss_pred cCccccc
Q 001897 849 QCPRLKY 855 (998)
Q Consensus 849 ~c~~L~~ 855 (998)
+++.+..
T Consensus 300 ~N~~lc~ 306 (313)
T 1ogq_A 300 NNKCLCG 306 (313)
T ss_dssp SSSEEES
T ss_pred CCCCccC
Confidence 7665554
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=8.5e-20 Score=218.90 Aligned_cols=376 Identities=13% Similarity=0.070 Sum_probs=231.6
Q ss_pred CCCcceEEEecCCCCCCCCChhhhcC-CCC-ccEEEcCCCC-CC--CCChhhhcccCCceEeecCCCCCCC----Cc-cc
Q 001897 534 HCPETLTLLLQGNFPLGRVPEKFLDG-FPA-LRVLNLSGTR-IH--SLPLSLLQLHNCRALLLRDCFYLED----LP-AL 603 (998)
Q Consensus 534 ~~~~l~~L~l~~~~~~~~l~~~~~~~-l~~-Lr~L~l~~~~-~~--~lp~~i~~l~~L~~L~L~~~~~~~~----lp-~i 603 (998)
.+++|+.|++++|. +.......+.. ++. |++|++++|. +. .++..+..+++|++|+|++|..... ++ .+
T Consensus 110 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 57888888888773 32211111222 334 8888888875 22 2333445788888888888864333 23 24
Q ss_pred cCCCCCCeeeecCCCCc-----ccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCccccc
Q 001897 604 GGLTKLQDLDLSATSIR-----ELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEG 678 (998)
Q Consensus 604 ~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 678 (998)
..+++|++|++++|.+. .++..+.++++|++|++++|. +..+|.. +.++++|+.|++........ .
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~~~~~~~-------~ 259 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGSLNEDIG-------M 259 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECBCCCCTT-------C
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH-HhhhhHHHhhcccccccccc-------h
Confidence 67788888888888775 445556778888888888876 5556644 78888888888865321100 1
Q ss_pred ccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCC-----CCCCCCccccEEEEecccCchhhHHH-
Q 001897 679 QTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTA-----NSLPTKHDERRVTISGIDLSGEWIGW- 752 (998)
Q Consensus 679 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~L~~L~l~~~~l~~~~~~~- 752 (998)
......+..+++|+.|++.... ....+..+..+++|+.|++..+.+. ..+..+++|+.|+++ +.+....+..
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~ 337 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL 337 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH
T ss_pred HHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH
Confidence 1223456677788887765321 1222334556778888888766532 113567788999998 4444433333
Q ss_pred --hhhcCceeeccc----------ccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecc
Q 001897 753 --LLTNASSLILNN----------CWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLH 820 (998)
Q Consensus 753 --~~~~L~~L~L~~----------c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 820 (998)
.+++|++|++++ |..+.... .......+++|++|+++.+.+...... .....+++|+.|+++
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRG---LIALAQGCQELEYMAVYVSDITNESLE---SIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH---HHHHHHHCTTCSEEEEEESCCCHHHHH---HHHHHCCSCCEEEEE
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHH---HHHHHhhCccCeEEEeecCCccHHHHH---HHHhhCCCCcEEEEe
Confidence 368899999995 76554321 111134578999999977665432111 111237899999998
Q ss_pred c---cccccccccc--cccccccCCCccEEEeecCcc-cccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCC
Q 001897 821 D---LAYLGNISGL--VGYLGLRFSKLRLMEVTQCPR-LKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTP 894 (998)
Q Consensus 821 ~---~~~l~~~~~~--~~~~~~~~~~L~~L~l~~c~~-L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~ 894 (998)
+ |..++..|.. +......+++|+.|+++.|.+ +..... ......+++|+.|++++|. +........
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~~------ 483 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL-SYIGQYSPNVRWMLLGYVG-ESDEGLMEF------ 483 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH-HHHHHSCTTCCEEEECSCC-SSHHHHHHH------
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH-HHHHHhCccceEeeccCCC-CCHHHHHHH------
Confidence 4 4455543211 111112488999999988875 332221 1133458999999999885 322110000
Q ss_pred CCCCCccceeecCCCccccc--cccCCCCCCCccEEEEecCCCCC
Q 001897 895 ETVVPNLRNLELKNLPKLRT--ICRQKESWQCLEQVKVIKCNLLR 937 (998)
Q Consensus 895 ~~~~p~L~~L~l~~~~~L~~--i~~~~~~l~~L~~L~i~~C~~L~ 937 (998)
...+++|++|+|++|+ ++. ++.....+++|+.|++++|+ ++
T Consensus 484 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CC
T ss_pred HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CC
Confidence 0357999999999998 442 23334568999999999998 44
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=200.05 Aligned_cols=243 Identities=21% Similarity=0.272 Sum_probs=171.4
Q ss_pred ceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCC-hhhhcccCCceEeecC
Q 001897 515 LKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLP-LSLLQLHNCRALLLRD 593 (998)
Q Consensus 515 l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~ 593 (998)
.+.++..+..+..+|..+. ++++.|++++| .+..++...|.++++|++|+|++|.+..++ ..+.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4567777777888887664 67888888888 567777667788999999999999988776 4688899999999999
Q ss_pred CCCCCCCc-cccCCCCCCeeeecCCCCcccCh-hhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccc
Q 001897 594 CFYLEDLP-ALGGLTKLQDLDLSATSIRELPR-GMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRV 671 (998)
Q Consensus 594 ~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 671 (998)
|......+ .+..+++|++|++++|.+..+|. .+..+++|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 198 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--- 198 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---
Confidence 86554444 48899999999999999988876 57889999999999877788888777889999999999888763
Q ss_pred cCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHH
Q 001897 672 KGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIG 751 (998)
Q Consensus 672 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 751 (998)
.+..+..+++|+.|+++.+.+....+..+ ..+.+|+.|++++|.++.
T Consensus 199 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------~~l~~L~~L~L~~n~l~~---- 245 (440)
T 3zyj_A 199 ---------EIPNLTPLIKLDELDLSGNHLSAIRPGSF--------------------QGLMHLQKLWMIQSQIQV---- 245 (440)
T ss_dssp ---------SCCCCTTCSSCCEEECTTSCCCEECTTTT--------------------TTCTTCCEEECTTCCCCE----
T ss_pred ---------cccccCCCcccCEEECCCCccCccChhhh--------------------ccCccCCEEECCCCceeE----
Confidence 12345666677777665554443222222 222233333333333221
Q ss_pred HhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccc
Q 001897 752 WLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLA 823 (998)
Q Consensus 752 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 823 (998)
..+..+..+++|+.|+|++|.+...+. .....+++|+.|+|++|+
T Consensus 246 -----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 -----------------------IERNAFDNLQSLVEINLAHNNLTLLPH----DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -----------------------ECTTSSTTCTTCCEEECTTSCCCCCCT----TTTSSCTTCCEEECCSSC
T ss_pred -----------------------EChhhhcCCCCCCEEECCCCCCCccCh----hHhccccCCCEEEcCCCC
Confidence 123345667777888887777665443 233456777778777774
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=1.6e-20 Score=225.21 Aligned_cols=370 Identities=15% Similarity=0.093 Sum_probs=244.9
Q ss_pred hcCCCCccEEEcCCCCCCC-CChhhhc-cc-CCceEeecCCCCCCC--Ccc-ccCCCCCCeeeecCCCCcc-----cChh
Q 001897 557 LDGFPALRVLNLSGTRIHS-LPLSLLQ-LH-NCRALLLRDCFYLED--LPA-LGGLTKLQDLDLSATSIRE-----LPRG 625 (998)
Q Consensus 557 ~~~l~~Lr~L~l~~~~~~~-lp~~i~~-l~-~L~~L~L~~~~~~~~--lp~-i~~l~~L~~L~l~~~~l~~-----lp~~ 625 (998)
+..+++|++|++++|.+.. .+..+.. ++ +|++|++++|..... ++. ..++++|++|++++|.+.. ++..
T Consensus 108 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred HhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 3478999999999998763 3345555 34 499999999874322 222 4589999999999997653 4445
Q ss_pred hhcCcCCcEEeCCCCccc----ccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecC
Q 001897 626 MENLSNLRRLNLSRTHYL----KKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENI 701 (998)
Q Consensus 626 i~~L~~L~~L~l~~~~~l----~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 701 (998)
...+++|++|++++|... ..++. .+.++++|+.|++.+|.+.. ....+..+++|+.|+++....
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-----------l~~~~~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-----------LVGFFKAAANLEEFCGGSLNE 255 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-----------GHHHHHHCTTCCEEEECBCCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-----------HHHHHhhhhHHHhhccccccc
Confidence 678899999999988742 22333 36789999999999986531 224577889999999964222
Q ss_pred C---CCCCCchhHhcccceeEEeec---CCCCCCCCCccccEEEEecccCchhhHHH---hhhcCceeecccccCchhhh
Q 001897 702 P---SQGTEDLTWIGRLRSFQFFIG---PTANSLPTKHDERRVTISGIDLSGEWIGW---LLTNASSLILNNCWGLDQML 772 (998)
Q Consensus 702 ~---~~~~~~l~~l~~L~~L~l~~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~~~---~~~~L~~L~L~~c~~l~~~~ 772 (998)
. ......+..+++|+.+.+... .++.....+++|+.|++++|.++...+.. .+++|++|++.++..
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~----- 330 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG----- 330 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH-----
T ss_pred ccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC-----
Confidence 1 122334556678888877532 22334456779999999999987665533 478999999985321
Q ss_pred hhhhhcccccCCCCCEEEEeC----------CCCccccCCCCCCCCCCCCCcceeeccccccccc-cccccccccccCCC
Q 001897 773 ETLVIDSVGAFASLKSLTIAG----------SRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGN-ISGLVGYLGLRFSK 841 (998)
Q Consensus 773 ~~~~~~~l~~l~~L~~L~L~~----------~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-~~~~~~~~~~~~~~ 841 (998)
..........+++|++|+|++ |...... +.......+++|++|++..+ .+.. .... ....+++
T Consensus 331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~---l~~~~~~ 404 (592)
T 3ogk_B 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR--GLIALAQGCQELEYMAVYVS-DITNESLES---IGTYLKN 404 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH--HHHHHHHHCTTCSEEEEEES-CCCHHHHHH---HHHHCCS
T ss_pred HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH--HHHHHHhhCccCeEEEeecC-CccHHHHHH---HHhhCCC
Confidence 111122235688999999994 4332211 01111234799999999554 3332 1111 1124789
Q ss_pred ccEEEee---cCcccccccchh---HHHhhCCCCCEEEEecccc-chhhhccccccCCCCCCCCCccceeecCCCccccc
Q 001897 842 LRLMEVT---QCPRLKYLLTYG---SFILALPNLQEIKVSFCDN-LVELFCYYSELNFTPETVVPNLRNLELKNLPKLRT 914 (998)
Q Consensus 842 L~~L~l~---~c~~L~~l~~~~---~~~~~l~~L~~L~l~~c~~-L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 914 (998)
|+.|++. .|+.++..+... ..+..+++|+.|++++|.. +........ ...+|+|++|++++|. ++.
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~------~~~~~~L~~L~L~~n~-l~~ 477 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI------GQYSPNVRWMLLGYVG-ESD 477 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH------HHSCTTCCEEEECSCC-SSH
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH------HHhCccceEeeccCCC-CCH
Confidence 9999998 467887764322 2356799999999998764 222111000 0247899999999886 432
Q ss_pred --cccCCCCCCCccEEEEecCCCCCC--CCCCCcccCCcceEecchh
Q 001897 915 --ICRQKESWQCLEQVKVIKCNLLRE--LPLTAQNADTVKEIIGELQ 957 (998)
Q Consensus 915 --i~~~~~~l~~L~~L~i~~C~~L~~--lP~~~~~l~~L~~l~~~~~ 957 (998)
++.....+++|++|++++|+ ++. +|.....+++|+.|....+
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred HHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence 33334678999999999998 542 4555567789999876443
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=1.3e-18 Score=200.53 Aligned_cols=243 Identities=23% Similarity=0.246 Sum_probs=165.8
Q ss_pred ceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCC-hhhhcccCCceEeecC
Q 001897 515 LKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLP-LSLLQLHNCRALLLRD 593 (998)
Q Consensus 515 l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~ 593 (998)
...++..+..+..+|..+. ++++.|++++| .+..++...|.++++|++|++++|.+..++ ..+.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4566777777777776554 67888888888 566666666788899999999999888765 5788899999999998
Q ss_pred CCCCCCCc-cccCCCCCCeeeecCCCCcccCh-hhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccc
Q 001897 594 CFYLEDLP-ALGGLTKLQDLDLSATSIRELPR-GMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRV 671 (998)
Q Consensus 594 ~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 671 (998)
|......+ .+..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+.++++|+.|++++|.+..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-- 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-- 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--
Confidence 87554444 48889999999999998888876 478889999999988777888887778888999999988887631
Q ss_pred cCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHH
Q 001897 672 KGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIG 751 (998)
Q Consensus 672 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 751 (998)
+..+..+++|+.|+++.+.+....+..+..
T Consensus 211 ----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------------------- 240 (452)
T 3zyi_A 211 ----------MPNLTPLVGLEELEMSGNHFPEIRPGSFHG---------------------------------------- 240 (452)
T ss_dssp ----------CCCCTTCTTCCEEECTTSCCSEECGGGGTT----------------------------------------
T ss_pred ----------cccccccccccEEECcCCcCcccCcccccC----------------------------------------
Confidence 123555666666666544443322222111
Q ss_pred HhhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccc
Q 001897 752 WLLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLA 823 (998)
Q Consensus 752 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 823 (998)
+++|+.|+++++.- ....+..+..+++|+.|+|++|.+...+. .....+++|+.|+|++|+
T Consensus 241 --l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 241 --LSSLKKLWVMNSQV-----SLIERNAFDGLASLVELNLAHNNLSSLPH----DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --CTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCSCCCT----TSSTTCTTCCEEECCSSC
T ss_pred --ccCCCEEEeCCCcC-----ceECHHHhcCCCCCCEEECCCCcCCccCh----HHhccccCCCEEEccCCC
Confidence 23333333333211 11123345667777777777777664443 233456777777777774
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=192.03 Aligned_cols=179 Identities=22% Similarity=0.251 Sum_probs=138.4
Q ss_pred CCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCe
Q 001897 534 HCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQD 611 (998)
Q Consensus 534 ~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~ 611 (998)
.|+.....+.+++ .+..+|..+ .++|++|++++|.+..+|. .+.++++|++|++++|......| .++++++|++
T Consensus 29 ~C~~~~~c~~~~~-~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSG-SLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCST-TCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCC-Ccccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3555556677666 788888765 3589999999999998887 79999999999999997666555 5999999999
Q ss_pred eeecCCCCcccChh-hhcCcCCcEEeCCCCcccccccc-cccCCCCCccEEEcccCcccccccCcccccccccccccccc
Q 001897 612 LDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQA-GIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLE 689 (998)
Q Consensus 612 L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 689 (998)
|++++|.++.+|.. ++++++|++|++++|. +..+|. ..+.++++|++|++++|.....+ ....+..++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~---------~~~~~~~l~ 174 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKI---------QRKDFAGLT 174 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEE---------CTTTTTTCC
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccccc---------CHHHccCCC
Confidence 99999999999987 8899999999999997 677877 55899999999999988532111 124577788
Q ss_pred cCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCc
Q 001897 690 RLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLS 746 (998)
Q Consensus 690 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 746 (998)
+|+.|+++.+.+....+..+ ..+++|+.|++++|.+.
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l--------------------~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSL--------------------KSIQNVSHLILHMKQHI 211 (353)
T ss_dssp EEEEEEEEETTCCEECTTTT--------------------TTCSEEEEEEEECSCST
T ss_pred CCCEEECCCCCcCccCHHHH--------------------hccccCCeecCCCCccc
Confidence 89999988776654333332 33445666666666654
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=1.5e-20 Score=217.94 Aligned_cols=371 Identities=16% Similarity=0.096 Sum_probs=191.1
Q ss_pred cceEEEecCCCCCCCC-ChhhhcCCCCccEEEcCCCCCC-----CCChhhhcccCCceEeecCCCCCCCCc-c-ccCCC-
Q 001897 537 ETLTLLLQGNFPLGRV-PEKFLDGFPALRVLNLSGTRIH-----SLPLSLLQLHNCRALLLRDCFYLEDLP-A-LGGLT- 607 (998)
Q Consensus 537 ~l~~L~l~~~~~~~~l-~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~~lp-~-i~~l~- 607 (998)
+++.|+++++. +... ...++..+++|++|++++|.+. .+|..+..+++|++|++++|......+ . ...+.
T Consensus 4 ~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred cceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 44455555442 2211 1223455666666666666655 345555666666666666655332212 1 12233
Q ss_pred ---CCCeeeecCCCCc-----ccChhhhcCcCCcEEeCCCCccccc----ccccccCCCCCccEEEcccCcccccccCcc
Q 001897 608 ---KLQDLDLSATSIR-----ELPRGMENLSNLRRLNLSRTHYLKK----IQAGIICRLSSLEILDMTLSDYHWRVKGQE 675 (998)
Q Consensus 608 ---~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~----~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 675 (998)
+|++|++++|.+. .+|..+..+++|++|++++|..... +........++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---- 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS---- 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG----
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH----
Confidence 5666666666665 3455566666666666666652211 11111223456667766666543110
Q ss_pred cccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhh----HH
Q 001897 676 DEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEW----IG 751 (998)
Q Consensus 676 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~----~~ 751 (998)
.......+..+++|+.|+++.+.+.......+.. .+. ...++|+.|++++|.++... +.
T Consensus 159 --~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~-------------~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 159 --CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ--GLK-------------DSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp --HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH--HHH-------------HSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred --HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH--HHh-------------cCCCCceEEEccCCCCcHHHHHHHHH
Confidence 0011233445566666666554433211111110 000 01224556666666665432 22
Q ss_pred H--hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccc
Q 001897 752 W--LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNIS 829 (998)
Q Consensus 752 ~--~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 829 (998)
. .+++|++|++++|.-.......+.......+++|+.|++++|.+..............+++|++|+|++|......+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 2 25777788877764322222222222233577888888888876542111111223346788888888874322111
Q ss_pred cccc-cccccCCCccEEEeecCcccccccc--hhHHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeec
Q 001897 830 GLVG-YLGLRFSKLRLMEVTQCPRLKYLLT--YGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLEL 906 (998)
Q Consensus 830 ~~~~-~~~~~~~~L~~L~l~~c~~L~~l~~--~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l 906 (998)
..+. ......++|+.|++++|. ++.... ....+..+++|++|++++|. +.......-.. .. ....++|++|++
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~-~l-~~~~~~L~~L~L 377 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQ-GL-GQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHH-HH-TSTTCCCCEEEC
T ss_pred HHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHH-HH-cCCCCceEEEEC
Confidence 1111 011123688888888875 443211 12346678999999999883 44321110000 00 012679999999
Q ss_pred CCCcccc-----ccccCCCCCCCccEEEEecCC
Q 001897 907 KNLPKLR-----TICRQKESWQCLEQVKVIKCN 934 (998)
Q Consensus 907 ~~~~~L~-----~i~~~~~~l~~L~~L~i~~C~ 934 (998)
++|. ++ .++..+..+++|++|++++|+
T Consensus 378 ~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 378 ADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 9985 44 456556678999999999985
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.9e-18 Score=188.15 Aligned_cols=172 Identities=23% Similarity=0.278 Sum_probs=124.7
Q ss_pred eEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC---ChhhhcccCCceEeec
Q 001897 516 KRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL---PLSLLQLHNCRALLLR 592 (998)
Q Consensus 516 ~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l---p~~i~~l~~L~~L~L~ 592 (998)
+.++..++.+..+|..+. ++++.|++++| .+..+|..+|.++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 356677777777776553 67888888887 56678877778888888888888888755 5677788888888888
Q ss_pred CCCCCCCCc-cccCCCCCCeeeecCCCCcccCh--hhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccc
Q 001897 593 DCFYLEDLP-ALGGLTKLQDLDLSATSIRELPR--GMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHW 669 (998)
Q Consensus 593 ~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 669 (998)
+|... .+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|. +...+...+.++++|++|++++|.+..
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc
Confidence 87644 444 68888888888888888887764 67888888888888887 444444447888888888888876632
Q ss_pred cccCcccccccccccccccccCceEEEEeecC
Q 001897 670 RVKGQEDEGQTNFEELGCLERLLVLSIRLENI 701 (998)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 701 (998)
. .....+..+++|+.|+++.+.+
T Consensus 165 ~---------~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 165 N---------FLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp G---------EECSCCTTCTTCCEEECTTSCC
T ss_pred c---------cchhHHhhCcCCCEEECCCCCc
Confidence 1 1123455566666666554433
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=2.9e-18 Score=184.58 Aligned_cols=213 Identities=24% Similarity=0.326 Sum_probs=152.3
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccCC-CCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCC-
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPD-CKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTR- 572 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~- 572 (998)
.+...+.++..+|. ...+++++|++++|.+..++. .+..+++|++|++++| .+..++...|..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCC
Confidence 34455556666654 346678888888888887764 4556888888888887 5566655556888888888888886
Q ss_pred CCCC-ChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCccccccccc
Q 001897 573 IHSL-PLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAG 649 (998)
Q Consensus 573 ~~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~ 649 (998)
+..+ |..+..+++|++|++++|......| .+.++++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|..
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 171 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPER 171 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHH
Confidence 7776 5678888888888888887665555 578888888888888888877755 7788888888888886 6667766
Q ss_pred ccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEE
Q 001897 650 IICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQF 720 (998)
Q Consensus 650 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 720 (998)
.+..+++|+.|++++|.+.... ...+..+++|+.|+++.+.+.......+..+++|+.|++
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVH----------PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEEC----------TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred HhcCccccCEEECCCCcccccC----------HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 5788888888888888764221 245667788888888777666544333443444443333
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.8e-17 Score=195.60 Aligned_cols=255 Identities=22% Similarity=0.198 Sum_probs=173.5
Q ss_pred cceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecC
Q 001897 514 SLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRD 593 (998)
Q Consensus 514 ~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 593 (998)
.++.++++++.+..+|..+. ++|+.|++++| .+..+|. .+++|++|++++|.++.+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 57788888888888887665 78888888888 5667775 46788899999888888887 678888899988
Q ss_pred CCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccC
Q 001897 594 CFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKG 673 (998)
Q Consensus 594 ~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 673 (998)
|.. +.+|. .+.+|++|++++|+++.+|.. +++|++|++++|. +..+|. .+++|+.|++++|.+..
T Consensus 111 N~l-~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~---- 175 (622)
T 3g06_A 111 NPL-THLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS---- 175 (622)
T ss_dssp CCC-CCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC----
T ss_pred CcC-CCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC----
Confidence 753 44554 677888889988888888874 4788888888886 566664 34678888888877631
Q ss_pred cccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHHh
Q 001897 674 QEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGWL 753 (998)
Q Consensus 674 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 753 (998)
+. ..+++|+.|+++.+.+..... ...+|+.|++++|.++... ..
T Consensus 176 --------l~--~~~~~L~~L~Ls~N~l~~l~~------------------------~~~~L~~L~L~~N~l~~l~--~~ 219 (622)
T 3g06_A 176 --------LP--MLPSGLQELSVSDNQLASLPT------------------------LPSELYKLWAYNNRLTSLP--AL 219 (622)
T ss_dssp --------CC--CCCTTCCEEECCSSCCSCCCC------------------------CCTTCCEEECCSSCCSSCC--CC
T ss_pred --------Cc--ccCCCCcEEECCCCCCCCCCC------------------------ccchhhEEECcCCcccccC--CC
Confidence 11 335677777776665543211 1123445555555443211 12
Q ss_pred hhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccc
Q 001897 754 LTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVG 833 (998)
Q Consensus 754 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 833 (998)
+++|+.|++++|.- ..+ + ..+++|+.|+|++|.+...+. .+++|+.|+|++| .+..+|..+.
T Consensus 220 ~~~L~~L~Ls~N~L-~~l------p--~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N-~L~~lp~~l~ 281 (622)
T 3g06_A 220 PSGLKELIVSGNRL-TSL------P--VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN-QLTRLPESLI 281 (622)
T ss_dssp CTTCCEEECCSSCC-SCC------C--CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS-CCCSCCGGGG
T ss_pred CCCCCEEEccCCcc-CcC------C--CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC-CCCcCCHHHh
Confidence 35666776666421 111 1 345788888888887764432 4678888888888 4556665433
Q ss_pred cccccCCCccEEEeecCc
Q 001897 834 YLGLRFSKLRLMEVTQCP 851 (998)
Q Consensus 834 ~~~~~~~~L~~L~l~~c~ 851 (998)
.+++|+.|++++++
T Consensus 282 ----~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 282 ----HLSSETTVNLEGNP 295 (622)
T ss_dssp ----GSCTTCEEECCSCC
T ss_pred ----hccccCEEEecCCC
Confidence 47888888888875
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=2.4e-19 Score=215.19 Aligned_cols=377 Identities=17% Similarity=0.102 Sum_probs=230.6
Q ss_pred CCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCC-CCCC--CChhhhcccCCceEeecCCCCCCC----Ccc-ccC
Q 001897 534 HCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGT-RIHS--LPLSLLQLHNCRALLLRDCFYLED----LPA-LGG 605 (998)
Q Consensus 534 ~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~-~~~~--lp~~i~~l~~L~~L~L~~~~~~~~----lp~-i~~ 605 (998)
.+++|+.|+++++......+..+...+++|++|++++| .+.. ++..+.++++|++|++++|..... ++. ...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 47789999998884322223333336889999999988 4543 555566889999999998873332 222 347
Q ss_pred CCCCCeeeecCCC--Cc--ccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccc
Q 001897 606 LTKLQDLDLSATS--IR--ELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTN 681 (998)
Q Consensus 606 l~~L~~L~l~~~~--l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 681 (998)
+++|++|++++|. +. .++..+..+++|++|++++|..+..++.. +.++++|+.|++..+...... ......
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~----~~~~~l 257 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRP----DVYSGL 257 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCH----HHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccch----hhHHHH
Confidence 7899999999886 32 23333456799999999988656666654 788899999987655321000 000012
Q ss_pred cccccccccCceEE-EEeecCCC-CCCCchhHhcccceeEEeecCCCC-----CCCCCccccEEEEecccCchhhHHH--
Q 001897 682 FEELGCLERLLVLS-IRLENIPS-QGTEDLTWIGRLRSFQFFIGPTAN-----SLPTKHDERRVTISGIDLSGEWIGW-- 752 (998)
Q Consensus 682 ~~~l~~l~~L~~L~-l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~L~~L~l~~~~l~~~~~~~-- 752 (998)
...+.++++|+.|. +. .... ........+++|+.|++..+.+.. ....+++|+.|+++++ ++...+..
T Consensus 258 ~~~l~~~~~L~~Ls~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~ 334 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFW--DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA 334 (594)
T ss_dssp HHHHHTCTTCCEEECCB--TCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred HHHHhcCCCcccccCCc--ccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH
Confidence 23566777777773 21 1111 112223467888888887665321 1346678999999988 44333332
Q ss_pred -hhhcCceeecccc--------cCchhhhhhhhhccc-ccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecc--
Q 001897 753 -LLTNASSLILNNC--------WGLDQMLETLVIDSV-GAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLH-- 820 (998)
Q Consensus 753 -~~~~L~~L~L~~c--------~~l~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~-- 820 (998)
.+++|++|++.+| ..+... .+..+ ..+++|+.|.+..+.+...... .....+|+|+.|+++
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~----~l~~l~~~~~~L~~L~~~~~~l~~~~~~---~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQ----GLVSVSMGCPKLESVLYFCRQMTNAALI---TIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHH----HHHHHHHHCTTCCEEEEEESCCCHHHHH---HHHHHCTTCCEEEEEES
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHH----HHHHHHHhchhHHHHHHhcCCcCHHHHH---HHHhhCCCcceeEeecc
Confidence 3688999999543 333221 11112 3478999998877665432111 111247899999999
Q ss_pred ---ccccccccccc--cccccccCCCccEEEeecCcccccccchhHHHhhCCCCCEEEEeccccchhhhccccccCCCCC
Q 001897 821 ---DLAYLGNISGL--VGYLGLRFSKLRLMEVTQCPRLKYLLTYGSFILALPNLQEIKVSFCDNLVELFCYYSELNFTPE 895 (998)
Q Consensus 821 ---~~~~l~~~~~~--~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~ 895 (998)
+|..++..|.. +......+++|+.|++++ .++...... ....+++|+.|++++|. +........ .
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~-l~~~~~~L~~L~L~~~~-i~~~~~~~l------~ 477 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEY-IGTYAKKMEMLSVAFAG-DSDLGMHHV------L 477 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHH-HHHHCTTCCEEEEESCC-SSHHHHHHH------H
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHH-HHHhchhccEeeccCCC-CcHHHHHHH------H
Confidence 45556543321 111112478999999965 444432221 22348999999999886 322111000 0
Q ss_pred CCCCccceeecCCCcccccc-ccCCCCCCCccEEEEecCCC
Q 001897 896 TVVPNLRNLELKNLPKLRTI-CRQKESWQCLEQVKVIKCNL 935 (998)
Q Consensus 896 ~~~p~L~~L~l~~~~~L~~i-~~~~~~l~~L~~L~i~~C~~ 935 (998)
..+|+|++|+|++|+.-... ......+++|+.|++++|+.
T Consensus 478 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 24799999999999862221 12345589999999999975
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=4.5e-20 Score=213.99 Aligned_cols=177 Identities=15% Similarity=-0.025 Sum_probs=102.0
Q ss_pred CCccccEEEEecccCchhh----HHH--hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCC
Q 001897 731 TKHDERRVTISGIDLSGEW----IGW--LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGC 804 (998)
Q Consensus 731 ~~~~L~~L~l~~~~l~~~~----~~~--~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 804 (998)
.+++++.|++++|.++... +.. .+++|++|++++|.-.......+........++|+.|++++|.+........
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 4567889999999888753 222 2688999999987532221111111111234699999999998754321111
Q ss_pred CCCCCCCCCcceeeccccccccccccccc-cccccCCCccEEEeecCccccccc--chhHHHhhCCCCCEEEEeccccch
Q 001897 805 AAHDDLLPNLEELHLHDLAYLGNISGLVG-YLGLRFSKLRLMEVTQCPRLKYLL--TYGSFILALPNLQEIKVSFCDNLV 881 (998)
Q Consensus 805 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~-~~~~~~~~L~~L~l~~c~~L~~l~--~~~~~~~~l~~L~~L~l~~c~~L~ 881 (998)
......+++|++|+|++|......+..+. ......++|+.|++++| .++... ..+..+..+++|++|++++|. +.
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~ 411 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC-LG 411 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS-CC
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC-CC
Confidence 22234568999999999943222121111 11112679999999998 454210 112346679999999999885 32
Q ss_pred hhhccccccCCCCCCCCCccceeecCCCcc
Q 001897 882 ELFCYYSELNFTPETVVPNLRNLELKNLPK 911 (998)
Q Consensus 882 ~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 911 (998)
......-. ...+ ...++|+.|.+.++..
T Consensus 412 ~~~~~~l~-~~l~-~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 412 DAGILQLV-ESVR-QPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHHHH-HHHT-STTCCCCEEECTTCCC
T ss_pred HHHHHHHH-HHhc-cCCcchhheeeccccc
Confidence 21100000 0000 2345788888877643
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=1.2e-17 Score=179.71 Aligned_cols=194 Identities=20% Similarity=0.258 Sum_probs=155.2
Q ss_pred eEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC-ChhhhcccCCceEeecCC
Q 001897 516 KRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL-PLSLLQLHNCRALLLRDC 594 (998)
Q Consensus 516 ~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 594 (998)
+.++..++.+..+|..+ .++++.|++++| .+..++...|..+++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 57788888888888755 478999999998 67778877789999999999999999977 678999999999999999
Q ss_pred CCCCCC-c-cccCCCCCCeeeecCCCCccc-ChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccc
Q 001897 595 FYLEDL-P-ALGGLTKLQDLDLSATSIREL-PRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRV 671 (998)
Q Consensus 595 ~~~~~l-p-~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 671 (998)
..++.+ | .+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..++...++++++|++|++++|.+....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccC
Confidence 755555 4 699999999999999999977 5568899999999999998 67777766899999999999999774211
Q ss_pred cCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeec
Q 001897 672 KGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIG 723 (998)
Q Consensus 672 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 723 (998)
...+..+++|+.|+++.+.+....+..+..+++|+.|++..+
T Consensus 170 ----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 170 ----------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp ----------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ----------HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 134777889999999877766554444444445554444433
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=4.9e-17 Score=191.86 Aligned_cols=258 Identities=18% Similarity=0.142 Sum_probs=197.1
Q ss_pred CcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeec
Q 001897 536 PETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLS 615 (998)
Q Consensus 536 ~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~ 615 (998)
.+++.|++++| .+..+|..++ ++|++|++++|.++.+|. .+++|++|+|++|. ++.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEEC
T ss_pred CCCcEEEecCC-CcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECc
Confidence 35778999888 6778887653 799999999999999987 67999999999987 455665 78999999999
Q ss_pred CCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEE
Q 001897 616 ATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLS 695 (998)
Q Consensus 616 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 695 (998)
+|.++.+|. .+++|++|++++|. +..+|.. +++|++|++++|.+.. ++ ..+.+|+.|+
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~-l~-------------~~~~~L~~L~ 167 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLAS-LP-------------ALPSELCKLW 167 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSC-CC-------------CCCTTCCEEE
T ss_pred CCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCC-cC-------------CccCCCCEEE
Confidence 999999988 67899999999997 7778764 4899999999987631 11 1235677777
Q ss_pred EEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHHhhhcCceeecccccCchhhhhhh
Q 001897 696 IRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGWLLTNASSLILNNCWGLDQMLETL 775 (998)
Q Consensus 696 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~ 775 (998)
++.+.+.... ..+++|+.|++++|.++.. ...+++|+.|++++|.-. .+
T Consensus 168 L~~N~l~~l~------------------------~~~~~L~~L~Ls~N~l~~l--~~~~~~L~~L~L~~N~l~-~l---- 216 (622)
T 3g06_A 168 AYNNQLTSLP------------------------MLPSGLQELSVSDNQLASL--PTLPSELYKLWAYNNRLT-SL---- 216 (622)
T ss_dssp CCSSCCSCCC------------------------CCCTTCCEEECCSSCCSCC--CCCCTTCCEEECCSSCCS-SC----
T ss_pred CCCCCCCCCc------------------------ccCCCCcEEECCCCCCCCC--CCccchhhEEECcCCccc-cc----
Confidence 7655544321 2235678888888887641 123589999999986421 11
Q ss_pred hhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCccccc
Q 001897 776 VIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKY 855 (998)
Q Consensus 776 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 855 (998)
+ ..+++|+.|++++|.+...+ ..+++|++|+|++| .++.+|. .+++|+.|++++| +++.
T Consensus 217 --~--~~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N-~L~~ 275 (622)
T 3g06_A 217 --P--ALPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRN-QLTR 275 (622)
T ss_dssp --C--CCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-CCCS
T ss_pred --C--CCCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCC-CCCc
Confidence 1 23589999999999876543 34689999999999 5667765 3789999999997 6777
Q ss_pred ccchhHHHhhCCCCCEEEEeccccc
Q 001897 856 LLTYGSFILALPNLQEIKVSFCDNL 880 (998)
Q Consensus 856 l~~~~~~~~~l~~L~~L~l~~c~~L 880 (998)
+|. .+..+++|+.|++++++--
T Consensus 276 lp~---~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 276 LPE---SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCG---GGGGSCTTCEEECCSCCCC
T ss_pred CCH---HHhhccccCEEEecCCCCC
Confidence 753 3678999999999998733
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=5.1e-17 Score=187.17 Aligned_cols=236 Identities=19% Similarity=0.233 Sum_probs=186.9
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccC-CCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLP-DCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
.+...+.++..+|. ...+++++|++++|.+..++ ..+..+++|+.|++++| .+..++...|.++++|++|+|++|.+
T Consensus 58 ~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcC
Confidence 34556666777764 45678999999999998764 45677999999999999 67777777789999999999999999
Q ss_pred CCCChh-hhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCC-CCcccChh-hhcCcCCcEEeCCCCccccccccc
Q 001897 574 HSLPLS-LLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSAT-SIRELPRG-MENLSNLRRLNLSRTHYLKKIQAG 649 (998)
Q Consensus 574 ~~lp~~-i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~-~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~ 649 (998)
..+|.. +..+++|++|+|++|......+ .+.++++|++|++++| .+..+|.. +..+++|++|++++|. +..+|.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~- 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN- 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC-
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc-
Confidence 988875 8889999999999987654444 5999999999999995 77788764 8899999999999997 677775
Q ss_pred ccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCC-
Q 001897 650 IICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANS- 728 (998)
Q Consensus 650 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~- 728 (998)
+..+++|+.|++++|.+.... ...+..+++|+.|+++.+.+.......+..+++|+.|++..+.+...
T Consensus 214 -~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 214 -LTPLVGLEELEMSGNHFPEIR----------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp -CTTCTTCCEEECTTSCCSEEC----------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred -ccccccccEEECcCCcCcccC----------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 889999999999999875322 35688899999999988887766666667777777777766654322
Q ss_pred ---CCCCccccEEEEecccC
Q 001897 729 ---LPTKHDERRVTISGIDL 745 (998)
Q Consensus 729 ---~~~~~~L~~L~l~~~~l 745 (998)
+..+.+|+.|++++|.+
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCE
T ss_pred hHHhccccCCCEEEccCCCc
Confidence 23445666666666653
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=186.68 Aligned_cols=236 Identities=19% Similarity=0.235 Sum_probs=186.5
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccC-CCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLP-DCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
.+...+..+..+|. .....++.|++++|.+..++ ..+..+++|+.|++++| .+..++...|.++++|++|+|++|.+
T Consensus 47 ~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 47 KVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcC
Confidence 34555666777775 45678999999999999776 45667999999999999 67778877889999999999999999
Q ss_pred CCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCC-CCcccCh-hhhcCcCCcEEeCCCCccccccccc
Q 001897 574 HSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSAT-SIRELPR-GMENLSNLRRLNLSRTHYLKKIQAG 649 (998)
Q Consensus 574 ~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~ 649 (998)
..+|. .+..+++|++|+|++|......+ .+.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~- 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN- 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-
Confidence 99887 68999999999999987654444 5999999999999995 7777776 48899999999999997 778875
Q ss_pred ccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCC-
Q 001897 650 IICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANS- 728 (998)
Q Consensus 650 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~- 728 (998)
+..+++|+.|++++|.+.... ...+..+++|+.|+++.+.+.......+..+++|+.|++..+.+...
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIR----------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEEC----------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred -cCCCcccCEEECCCCccCccC----------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 899999999999999875322 25678889999999988877766666666677777777765544321
Q ss_pred ---CCCCccccEEEEecccC
Q 001897 729 ---LPTKHDERRVTISGIDL 745 (998)
Q Consensus 729 ---~~~~~~L~~L~l~~~~l 745 (998)
+..+.+|+.|++++|.+
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCE
T ss_pred hhHhccccCCCEEEcCCCCc
Confidence 23345566666666553
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=9.8e-20 Score=218.52 Aligned_cols=371 Identities=14% Similarity=0.091 Sum_probs=230.9
Q ss_pred hhcCCCCccEEEcCCCCCCC-CChhhh-cccCCceEeecCCCCCCC--Ccc-ccCCCCCCeeeecCCCCcc-----cChh
Q 001897 556 FLDGFPALRVLNLSGTRIHS-LPLSLL-QLHNCRALLLRDCFYLED--LPA-LGGLTKLQDLDLSATSIRE-----LPRG 625 (998)
Q Consensus 556 ~~~~l~~Lr~L~l~~~~~~~-lp~~i~-~l~~L~~L~L~~~~~~~~--lp~-i~~l~~L~~L~l~~~~l~~-----lp~~ 625 (998)
++..+++|++|++++|.+.. .+..+. .+++|++|++++|..++. ++. +.++++|++|++++|.++. ++..
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 34578899999999998763 334454 689999999999965554 444 4589999999999998663 3333
Q ss_pred hhcCcCCcEEeCCCCccccccc----ccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecC
Q 001897 626 MENLSNLRRLNLSRTHYLKKIQ----AGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENI 701 (998)
Q Consensus 626 i~~L~~L~~L~l~~~~~l~~~p----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 701 (998)
...+++|++|++++|. ..+. ...+.++++|++|++.+|..... ....+..+++|+.|+++....
T Consensus 180 ~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~----------l~~~~~~~~~L~~L~l~~~~~ 247 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEK----------LATLLQRAPQLEELGTGGYTA 247 (594)
T ss_dssp CTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH----------HHHHHHHCTTCSEEECSBCCC
T ss_pred hhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH----------HHHHHhcCCcceEcccccccC
Confidence 4477899999999885 1121 12245679999999998732111 224566788899988643221
Q ss_pred CCC------CCCchhHhcccceeEEeecC----CCCCCCCCccccEEEEecccCchhhHHH---hhhcCceeecccccCc
Q 001897 702 PSQ------GTEDLTWIGRLRSFQFFIGP----TANSLPTKHDERRVTISGIDLSGEWIGW---LLTNASSLILNNCWGL 768 (998)
Q Consensus 702 ~~~------~~~~l~~l~~L~~L~l~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~---~~~~L~~L~L~~c~~l 768 (998)
... ....+..+++|+.+.-.... ++.....+++|+.|++++|.+++..+.. .+++|++|++.+|..
T Consensus 248 ~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~- 326 (594)
T 2p1m_B 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE- 326 (594)
T ss_dssp CCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGH-
T ss_pred ccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccC-
Confidence 000 01134556667766321111 1111224578999999999987655544 468999999998722
Q ss_pred hhhhhhhhhcccccCCCCCEEEEeCCCCc------cccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCc
Q 001897 769 DQMLETLVIDSVGAFASLKSLTIAGSRSS------LRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKL 842 (998)
Q Consensus 769 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~------~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L 842 (998)
...+. .....+++|+.|+|++|... .....+.......+++|++|.+.++ .++... .......+++|
T Consensus 327 ~~~l~----~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~--~~~l~~~~~~L 399 (594)
T 2p1m_B 327 DAGLE----VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR-QMTNAA--LITIARNRPNM 399 (594)
T ss_dssp HHHHH----HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES-CCCHHH--HHHHHHHCTTC
T ss_pred HHHHH----HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC-CcCHHH--HHHHHhhCCCc
Confidence 11111 11235789999999664210 0000000011123789999966554 333221 11111247999
Q ss_pred cEEEee-----cCcccccccchh---HHHhhCCCCCEEEEeccccchhhhccccccCCCCCCCCCccceeecCCCccccc
Q 001897 843 RLMEVT-----QCPRLKYLLTYG---SFILALPNLQEIKVSFCDNLVELFCYYSELNFTPETVVPNLRNLELKNLPKLRT 914 (998)
Q Consensus 843 ~~L~l~-----~c~~L~~l~~~~---~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 914 (998)
+.|++. +|.+++..+... ..+..+++|+.|++++ .+.......-. ..+++|++|++++|..-..
T Consensus 400 ~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~------~~~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 400 TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIG------TYAKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHH------HHCTTCCEEEEESCCSSHH
T ss_pred ceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHH------HhchhccEeeccCCCCcHH
Confidence 999999 788888655422 2356889999999976 33332111000 1378999999999863222
Q ss_pred cccC-CCCCCCccEEEEecCCCCCCC--CCCCcccCCcceEecc
Q 001897 915 ICRQ-KESWQCLEQVKVIKCNLLREL--PLTAQNADTVKEIIGE 955 (998)
Q Consensus 915 i~~~-~~~l~~L~~L~i~~C~~L~~l--P~~~~~l~~L~~l~~~ 955 (998)
.... ...+++|++|++++|+. +.. +.....+++|+.|...
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEE
T ss_pred HHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeee
Confidence 1111 24589999999999985 321 2344567889988754
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=8.2e-19 Score=191.77 Aligned_cols=103 Identities=18% Similarity=0.271 Sum_probs=48.4
Q ss_pred hhcCCCCccEEEcCCCCCCCCC-hhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcE
Q 001897 556 FLDGFPALRVLNLSGTRIHSLP-LSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRR 634 (998)
Q Consensus 556 ~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 634 (998)
++..+++|++|++++|.+..++ ..+..+++|++|++++|...... .+..+++|++|++++|.++.+|. +++|++
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~ 103 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIET 103 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEECcCCccccccC----CCCcCE
Confidence 3344445555555555555443 24555555555555554432222 24555555555555555544432 245555
Q ss_pred EeCCCCcccccccccccCCCCCccEEEcccCcc
Q 001897 635 LNLSRTHYLKKIQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 635 L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
|++++|. +..++.. .+++|++|++++|.+
T Consensus 104 L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l 132 (317)
T 3o53_A 104 LHAANNN-ISRVSCS---RGQGKKNIYLANNKI 132 (317)
T ss_dssp EECCSSC-CSEEEEC---CCSSCEEEECCSSCC
T ss_pred EECCCCc-cCCcCcc---ccCCCCEEECCCCCC
Confidence 5555554 3333321 244455555555444
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=4.8e-17 Score=177.06 Aligned_cols=237 Identities=19% Similarity=0.208 Sum_probs=183.9
Q ss_pred EeecCCCccccchhhhcccceEEEeecCCccccCCCC-CCCCcceEEEecCCCCCCCC---ChhhhcCCCCccEEEcCCC
Q 001897 496 LVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCK-VHCPETLTLLLQGNFPLGRV---PEKFLDGFPALRVLNLSGT 571 (998)
Q Consensus 496 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~~l~~L~l~~~~~~~~l---~~~~~~~l~~Lr~L~l~~~ 571 (998)
+...+.++..+|. ...+++++|++++|.+..+|... ..+++|+.|++++| .+..+ +.. +..+++|++|++++|
T Consensus 12 l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFN 88 (306)
T ss_dssp EECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSC
T ss_pred EEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCC
Confidence 4555666777765 44578999999999999998864 57999999999998 44433 344 357899999999999
Q ss_pred CCCCCChhhhcccCCceEeecCCCCCCCCc--cccCCCCCCeeeecCCCCccc-ChhhhcCcCCcEEeCCCCcccc-ccc
Q 001897 572 RIHSLPLSLLQLHNCRALLLRDCFYLEDLP--ALGGLTKLQDLDLSATSIREL-PRGMENLSNLRRLNLSRTHYLK-KIQ 647 (998)
Q Consensus 572 ~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~-~~p 647 (998)
.+..+|..+..+++|++|++++|......+ .+..+++|++|++++|.+... |..+..+++|++|++++|.... .+|
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 999999999999999999999987665544 589999999999999998854 5568899999999999998444 255
Q ss_pred ccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCC
Q 001897 648 AGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTAN 727 (998)
Q Consensus 648 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 727 (998)
.. +..+++|++|++++|.+... ....+..+++|+.|+++.+.+.......+..+++|+.|++..+.+..
T Consensus 169 ~~-~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 169 DI-FTELRNLTFLDLSQCQLEQL----------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp SC-CTTCTTCCEEECTTSCCCEE----------CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred hH-HhhCcCCCEEECCCCCcCCc----------CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 54 89999999999999987432 12567788999999998888776655566667777777776665432
Q ss_pred ----CCCCC-ccccEEEEecccCc
Q 001897 728 ----SLPTK-HDERRVTISGIDLS 746 (998)
Q Consensus 728 ----~~~~~-~~L~~L~l~~~~l~ 746 (998)
.+... .+|+.|++++|.+.
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCHHHHHhhhccCCEEEccCCCee
Confidence 22333 36667777766654
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=3.9e-16 Score=166.21 Aligned_cols=192 Identities=22% Similarity=0.329 Sum_probs=122.8
Q ss_pred cceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChh-hhcccCCceEeec
Q 001897 514 SLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLS-LLQLHNCRALLLR 592 (998)
Q Consensus 514 ~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~ 592 (998)
..+.++++++.+..+|..+. +.++.|++++| .+..++...|.++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 34567777777777766443 56777777776 45666665567777777777777777777664 3667777777777
Q ss_pred CCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccccc
Q 001897 593 DCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWR 670 (998)
Q Consensus 593 ~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 670 (998)
+|......+ .+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...+..+++|+.|++++|.+...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEe
Confidence 766444333 367777777777777777766544 5677777777777776 5666666567777777777777765321
Q ss_pred ccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeE
Q 001897 671 VKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQ 719 (998)
Q Consensus 671 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 719 (998)
....+..+++|+.|+++.+.+.......+..+++|+.|+
T Consensus 173 ----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 173 ----------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp ----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ----------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence 112355667777777766655544333333333333333
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=1.1e-15 Score=162.87 Aligned_cols=196 Identities=23% Similarity=0.362 Sum_probs=164.4
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccCC-CCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPD-CKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
.+...+..+..+|. .....+++|++++|.+..++. .+..+++|++|++++| .+..++..+|..+++|++|++++|.+
T Consensus 20 ~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 20 SVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp EEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcC
Confidence 45566666777664 345789999999999998876 5667999999999998 67788988889999999999999999
Q ss_pred CCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCcccccccccc
Q 001897 574 HSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGI 650 (998)
Q Consensus 574 ~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~ 650 (998)
..+|. .+..+++|++|++++|......+ .+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 176 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGA 176 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT
T ss_pred CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhH
Confidence 98886 46899999999999988666555 489999999999999999999876 7899999999999997 77787766
Q ss_pred cCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCC
Q 001897 651 ICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 651 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
+.++++|++|++++|.+.... ...+..+++|+.|+++.+.+..
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVP----------EGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCBCC
T ss_pred hccCCCcCEEECCCCcCCcCC----------HHHhccccCCCEEEecCCCeeC
Confidence 899999999999999874211 1346778899999998776543
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=1e-17 Score=183.01 Aligned_cols=166 Identities=20% Similarity=0.204 Sum_probs=119.6
Q ss_pred EEEeecCCccccCCCC-CCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCC
Q 001897 517 RVSFMNNSITKLPDCK-VHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCF 595 (998)
Q Consensus 517 ~l~l~~~~~~~l~~~~-~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~ 595 (998)
..+++.+.+...+..+ ..+++++.|++++| .+..++...|..+++|++|++++|.+...++ +..+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc
Confidence 3344444444333222 33678899999988 6667776677899999999999999887665 8889999999999886
Q ss_pred CCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcc
Q 001897 596 YLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQE 675 (998)
Q Consensus 596 ~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 675 (998)
.. . +..+++|++|++++|.+..++.. .+++|++|++++|. +..++...++.+++|++|++++|.+....
T Consensus 92 l~-~---l~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---- 160 (317)
T 3o53_A 92 VQ-E---LLVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVN---- 160 (317)
T ss_dssp EE-E---EEECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEE----
T ss_pred cc-c---ccCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCccc----
Confidence 32 2 33448899999999999877653 47889999999987 56666555888999999999988774221
Q ss_pred cccccccccc-cccccCceEEEEeecC
Q 001897 676 DEGQTNFEEL-GCLERLLVLSIRLENI 701 (998)
Q Consensus 676 ~~~~~~~~~l-~~l~~L~~L~l~~~~~ 701 (998)
...+ ..+++|+.|+++.+.+
T Consensus 161 ------~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 161 ------FAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ------GGGGGGGTTTCCEEECTTSCC
T ss_pred ------HHHHhhccCcCCEEECCCCcC
Confidence 1233 3567777777765544
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=5.5e-16 Score=165.84 Aligned_cols=195 Identities=21% Similarity=0.250 Sum_probs=136.7
Q ss_pred ecCCCccccchhhhcccceEEEeecCCccccCC-CCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC
Q 001897 498 RSGAGLTEVSETELVNSLKRVSFMNNSITKLPD-CKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL 576 (998)
Q Consensus 498 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l 576 (998)
..+..+..+|. ...+.+++|++++|.+..++. .+..+++|++|++++| .+..++...|..+++|++|++++|.+..+
T Consensus 14 c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 14 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp CTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 34444555554 344578888888888887765 5566888888888887 56666666678888888888888888866
Q ss_pred C-hhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcc--cChhhhcCcCCcEEeCCCCcccccccccccC
Q 001897 577 P-LSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRE--LPRGMENLSNLRRLNLSRTHYLKKIQAGIIC 652 (998)
Q Consensus 577 p-~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~ 652 (998)
+ ..+.++++|++|++++|......+ .++.+++|++|++++|.+.. +|..+..+++|++|++++|. +..++...+.
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 170 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR 170 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhh
Confidence 5 467888888888888877655555 58888888888888888875 67788888888888888887 5555544466
Q ss_pred CCCCcc----EEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCC
Q 001897 653 RLSSLE----ILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGT 706 (998)
Q Consensus 653 ~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 706 (998)
.+++|+ .|++++|.+.... .......+|+.|+++.+.+.....
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~-----------~~~~~~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQ-----------PGAFKEIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEEC-----------TTSSCSCCEEEEECCSSCCSCCCT
T ss_pred hhhhccccceeeecCCCcccccC-----------ccccCCCcccEEECCCCceeecCH
Confidence 666665 7888877764211 112222367777777666654433
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=1.4e-15 Score=162.70 Aligned_cols=144 Identities=26% Similarity=0.328 Sum_probs=76.9
Q ss_pred EeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCC
Q 001897 519 SFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYL 597 (998)
Q Consensus 519 ~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~ 597 (998)
...+..+..+|..+. +++++|++++| .+..++...|.++++|++|++++|.+..++. .+..+++|++|++++|...
T Consensus 13 ~c~~~~l~~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCSSCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCccccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 333444445554332 34556666655 4444444445556666666666666555443 4555666666666665544
Q ss_pred CCCc-cccCCCCCCeeeecCCCCcccCh-hhhcCcCCcEEeCCCCccccc--ccccccCCCCCccEEEcccCcc
Q 001897 598 EDLP-ALGGLTKLQDLDLSATSIRELPR-GMENLSNLRRLNLSRTHYLKK--IQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 598 ~~lp-~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
...+ .+.++++|++|++++|.+..++. .++.+++|++|++++|. +.. +|.. ++++++|++|++++|.+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCC
Confidence 3333 35556666666666665555544 35555666666665555 332 2333 55555566665555544
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=3.1e-16 Score=181.52 Aligned_cols=125 Identities=21% Similarity=0.234 Sum_probs=74.2
Q ss_pred CCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeee
Q 001897 535 CPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDL 614 (998)
Q Consensus 535 ~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l 614 (998)
+++|+.|++++| .+..++...|..+++|++|+|++|.+...++ ++.+++|++|+|++|... .+| ..++|++|++
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~---~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL---VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EEE---ECTTCCEEEC
T ss_pred CCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CCC---CCCCcCEEEC
Confidence 446666666666 4455555555666777777777766665443 666666777777666422 222 2266666777
Q ss_pred cCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 615 SATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 615 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
++|.+..+|.. .+++|++|++++|. +..+++..++.+++|+.|++++|.+.
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred cCCcCCCCCcc--ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC
Confidence 66666655442 35666666666665 33343333566666666666666553
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=1.9e-15 Score=162.16 Aligned_cols=176 Identities=25% Similarity=0.243 Sum_probs=136.0
Q ss_pred cccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEee
Q 001897 512 VNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLL 591 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L 591 (998)
..+++.+++.++.+..+|..+. ++++.|++++| .+..++...|..+++|++|++++|.+..+|.. +.+++|++|++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 3467788888888888887664 67888888888 56666666678888999999999888877664 78888999999
Q ss_pred cCCCCCCCCc-cccCCCCCCeeeecCCCCcccCh-hhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccc
Q 001897 592 RDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPR-GMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHW 669 (998)
Q Consensus 592 ~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 669 (998)
++|... .+| .+..+++|++|++++|.++.+|. .+..+++|++|++++|. +..+|.+.+..+++|+.|++++|.+..
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCc
Confidence 887644 556 58888889999999888888874 47888889999998887 667777777888889999988887742
Q ss_pred cccCcccccccccccccccccCceEEEEeecCCC
Q 001897 670 RVKGQEDEGQTNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
.. ...+..+++|+.|+++.+.+..
T Consensus 163 l~----------~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 163 LP----------AGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CC----------TTTTTTCTTCCEEECCSSCCCC
T ss_pred cC----------HHHhcCcCCCCEEECCCCcCCc
Confidence 11 1335667888888887766653
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=2.2e-15 Score=163.52 Aligned_cols=173 Identities=20% Similarity=0.327 Sum_probs=140.7
Q ss_pred hhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceE
Q 001897 510 ELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRAL 589 (998)
Q Consensus 510 ~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 589 (998)
...++++++++.++.+..++ .+..+++|+.|++++| .+..++. +..+++|++|++++|.+..+| .+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 34668999999999888877 4667899999999988 6666766 688999999999999988875 68889999999
Q ss_pred eecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccc
Q 001897 590 LLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHW 669 (998)
Q Consensus 590 ~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 669 (998)
++++|. +..++.+..+++|++|++++|.++.+|. +..+++|++|++++|. +..++. +..+++|+.|++++|.+..
T Consensus 113 ~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ECCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCc
Confidence 999986 4456678999999999999999988876 8889999999999987 666665 7889999999999887631
Q ss_pred cccCcccccccccccccccccCceEEEEeecCCCC
Q 001897 670 RVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQ 704 (998)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 704 (998)
+..+..+++|+.|+++.+.+...
T Consensus 188 ------------~~~l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 188 ------------ISPLASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp ------------CGGGGGCTTCCEEECTTSCCCBC
T ss_pred ------------ChhhcCCCCCCEEEccCCccCcc
Confidence 12367788888888877766543
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=1.8e-17 Score=180.60 Aligned_cols=241 Identities=19% Similarity=0.156 Sum_probs=144.3
Q ss_pred CcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC--CCChhhh-------cccCCceEeecCCCCCCCCc-cc--
Q 001897 536 PETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH--SLPLSLL-------QLHNCRALLLRDCFYLEDLP-AL-- 603 (998)
Q Consensus 536 ~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~--~lp~~i~-------~l~~L~~L~L~~~~~~~~lp-~i-- 603 (998)
.+++.+.+++|. + .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|......| .+
T Consensus 43 ~~L~~l~l~~n~-l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDT-E-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCT-T-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeecccc-c-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 445556666663 3 566655332 777777777764 3555554 67777777777777665666 33
Q ss_pred cCCCCCCeeeecCCCCcccChhhhcC-----cCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCccccc
Q 001897 604 GGLTKLQDLDLSATSIRELPRGMENL-----SNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEG 678 (998)
Q Consensus 604 ~~l~~L~~L~l~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 678 (998)
+.+++|++|++++|.++.+|..++.+ ++|++|++++|. +..++...++++++|++|++++|.+....+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 190 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERG------ 190 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHH------
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchH------
Confidence 77777777777777777667666666 777777777776 455554447777777777777776532110
Q ss_pred ccccccc--cccccCceEEEEeecCCCCCC---CchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHH-
Q 001897 679 QTNFEEL--GCLERLLVLSIRLENIPSQGT---EDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGW- 752 (998)
Q Consensus 679 ~~~~~~l--~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~- 752 (998)
.+..+ ..+++|+.|+++.+.+..... ..+..+++|+ .|++++|.+++..+..
T Consensus 191 --~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~--------------------~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 191 --LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ--------------------GLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp --HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS--------------------EEECTTSCCCSSCCCSC
T ss_pred --HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC--------------------EEECCCCcCCcccchhh
Confidence 11222 566777777776665542110 0111223344 4444444433322100
Q ss_pred --hhhcCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeecccccc
Q 001897 753 --LLTNASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAY 824 (998)
Q Consensus 753 --~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 824 (998)
.+++|+.|++++|.-. . .+..+. ++|+.|++++|.+...+ . ...+++|++|+|++|+.
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~-----ip~~~~--~~L~~L~Ls~N~l~~~p-----~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-Q-----VPKGLP--AKLSVLDLSYNRLDRNP-----S-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-S-----CCSSCC--SEEEEEECCSSCCCSCC-----C-TTTSCEEEEEECTTCTT
T ss_pred hhhcCCCCEEECCCCccC-h-----hhhhcc--CCceEEECCCCCCCCCh-----h-HhhCCCCCEEeccCCCC
Confidence 1356666666664321 1 122233 78999999999876543 2 45689999999999853
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=1.3e-15 Score=162.37 Aligned_cols=177 Identities=24% Similarity=0.334 Sum_probs=127.7
Q ss_pred hhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChh-hhcccCCc
Q 001897 509 TELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLS-LLQLHNCR 587 (998)
Q Consensus 509 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~ 587 (998)
....++++.+.+.++.+..++. +..+++|+.|++++| .+..++ .+..+++|++|++++|.+..+|.. +..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccccc-cccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3456778888888888776653 566888888888887 455544 357788888888888888877654 57888888
Q ss_pred eEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccC
Q 001897 588 ALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLS 665 (998)
Q Consensus 588 ~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~ 665 (998)
+|++++|......+ .++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..++...++.+++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC
Confidence 88888877555444 378888888888888888877765 5778888888888886 56666665678888888888887
Q ss_pred cccccccCcccccccccccccccccCceEEEEeec
Q 001897 666 DYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLEN 700 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 700 (998)
.+.... ...+..+++|+.|+++.+.
T Consensus 192 ~l~~~~----------~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 192 QLKSVP----------DGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCSCCC----------TTTTTTCTTCCEEECCSSC
T ss_pred cCCccC----------HHHHhCCcCCCEEEccCCC
Confidence 764211 1235566666666665443
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=8.2e-15 Score=154.09 Aligned_cols=176 Identities=22% Similarity=0.318 Sum_probs=134.4
Q ss_pred cceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeec
Q 001897 514 SLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLR 592 (998)
Q Consensus 514 ~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~ 592 (998)
..++++++++.+..+|..+. +.++.|++++| .+..++...|.++++|++|++++|.+..++. .+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45677888888888887664 67888888888 5666666667888889999999888887665 47888889999998
Q ss_pred CCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccccc
Q 001897 593 DCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWR 670 (998)
Q Consensus 593 ~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 670 (998)
+|......+ .+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...++.+++|++|++++|.+...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 887655544 478888899999988888888776 5788889999988886 6677776688888888998888876421
Q ss_pred ccCcccccccccccccccccCceEEEEeecCCC
Q 001897 671 VKGQEDEGQTNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 671 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
. ...+..+++|+.|+++.+.+..
T Consensus 171 ~----------~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 P----------HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp C----------TTTTTTCTTCCEEECCSCCBCT
T ss_pred C----------HHHHhCCCCCCEEEeeCCceeC
Confidence 1 1346667778888877666544
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=4e-15 Score=158.45 Aligned_cols=173 Identities=23% Similarity=0.383 Sum_probs=146.8
Q ss_pred ccEEeecCCCccccchhhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCC
Q 001897 493 CKSLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTR 572 (998)
Q Consensus 493 ~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~ 572 (998)
...+...+..+..++.....+++++|++++|.+..++ .+..+++|++|++++| .+..++...|..+++|++|++++|.
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc
Confidence 3445556666666666667789999999999998765 5677999999999999 6778888888999999999999999
Q ss_pred CCCCChh-hhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCccccccccc
Q 001897 573 IHSLPLS-LLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAG 649 (998)
Q Consensus 573 ~~~lp~~-i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~ 649 (998)
+..+|.. ++.+++|++|++++|......+ .++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..++..
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 199 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDG 199 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHH
Confidence 9988765 7899999999999997654444 379999999999999999988776 6889999999999998 6677777
Q ss_pred ccCCCCCccEEEcccCccc
Q 001897 650 IICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 650 ~l~~l~~L~~L~l~~~~~~ 668 (998)
.++.+++|+.|++++|.+.
T Consensus 200 ~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 200 VFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp TTTTCTTCCEEECCSSCBC
T ss_pred HHhCCcCCCEEEccCCCcc
Confidence 6899999999999999763
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=3.1e-15 Score=156.07 Aligned_cols=187 Identities=11% Similarity=0.200 Sum_probs=149.8
Q ss_pred ccccchhhhcccceEEEeecCCccccCC-CCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCC-CCCCCCCh-h
Q 001897 503 LTEVSETELVNSLKRVSFMNNSITKLPD-CKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSG-TRIHSLPL-S 579 (998)
Q Consensus 503 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~-~~~~~lp~-~ 579 (998)
+..+|. ....++++++++|.+..+|. .+..+++|+.|++++|..+..++...|.++++|++|++++ |.+..+|. .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 556665 56689999999999998887 4556899999999998547888887789999999999998 88988875 6
Q ss_pred hhcccCCceEeecCCCCCCCCccccCCCCCC---eeeecCC-CCcccChh-hhcCcCCc-EEeCCCCcccccccccccCC
Q 001897 580 LLQLHNCRALLLRDCFYLEDLPALGGLTKLQ---DLDLSAT-SIRELPRG-MENLSNLR-RLNLSRTHYLKKIQAGIICR 653 (998)
Q Consensus 580 i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~l~~~p~~~l~~ 653 (998)
+..+++|++|++++|... .+|.+..+++|+ +|++++| .++.+|.. +..+++|+ +|++++|. +..+|...+..
T Consensus 101 f~~l~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~ 178 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG 178 (239)
T ss_dssp EECCTTCCEEEEEEECCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT
T ss_pred hCCCCCCCEEeCCCCCCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC
Confidence 788999999999998744 477788888888 9999999 99988865 88899999 99999987 66888774544
Q ss_pred CCCccEEEcccCc-ccccccCccccccccccccccc-ccCceEEEEeecCCCC
Q 001897 654 LSSLEILDMTLSD-YHWRVKGQEDEGQTNFEELGCL-ERLLVLSIRLENIPSQ 704 (998)
Q Consensus 654 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~ 704 (998)
++|+.|++++|. +.. + ....+..+ ++|+.|+++.+.+...
T Consensus 179 -~~L~~L~L~~n~~l~~-i---------~~~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTV-I---------DKDAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp -CEEEEEECTTCTTCCE-E---------CTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred -CCCCEEEcCCCCCccc-C---------CHHHhhccccCCcEEECCCCccccC
Confidence 899999999984 532 1 11346667 8888888877766543
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=8.9e-15 Score=157.00 Aligned_cols=192 Identities=20% Similarity=0.214 Sum_probs=158.2
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccC-CCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLP-DCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
.+...+..+..+|. ...+.++.|++++|.+..++ ..+..+++|+.|++++| .+..++.. ..+++|++|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 14 EVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD--GTLPVLGTLDLSHNQL 89 (290)
T ss_dssp EEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC--SCCTTCCEEECCSSCC
T ss_pred EEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC--CCCCcCCEEECCCCcC
Confidence 45556666676664 34578999999999998764 45667999999999999 56666653 7899999999999999
Q ss_pred CCCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCccccccccccc
Q 001897 574 HSLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGII 651 (998)
Q Consensus 574 ~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l 651 (998)
..+|..+..+++|++|++++|......| .+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|.+.+
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 168 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLL 168 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTT
T ss_pred CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHh
Confidence 9999999999999999999998666555 599999999999999999998876 5789999999999998 788998878
Q ss_pred CCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCC
Q 001897 652 CRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIP 702 (998)
Q Consensus 652 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 702 (998)
.++++|+.|++++|.+.. ....+..+.+|+.++++.+...
T Consensus 169 ~~l~~L~~L~L~~N~l~~-----------ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLYT-----------IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCTTCCEEECCSSCCCC-----------CCTTTTTTCCCSEEECCSCCBC
T ss_pred cCcCCCCEEECCCCcCCc-----------cChhhcccccCCeEEeCCCCcc
Confidence 899999999999998751 1234555667888887766554
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=2.1e-14 Score=155.68 Aligned_cols=189 Identities=24% Similarity=0.391 Sum_probs=159.9
Q ss_pred ccEEeecCCCccccchhhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCC
Q 001897 493 CKSLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTR 572 (998)
Q Consensus 493 ~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~ 572 (998)
...+...+..+..++.....+++++|++++|.+..++. +..+++|+.|++++| .+..++. +..+++|++|++++|.
T Consensus 43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGG--GTTCTTCCEEECTTSC
T ss_pred cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCchh--hcCCCCCCEEECCCCC
Confidence 34555666666666666667899999999999998887 778999999999999 5666653 6899999999999999
Q ss_pred CCCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccC
Q 001897 573 IHSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIIC 652 (998)
Q Consensus 573 ~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~ 652 (998)
+..+|. +..+++|++|++++|.. ..++.++.+++|++|++++|.++.+|. +..+++|++|++++|. +..++. +.
T Consensus 119 l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~ 192 (308)
T 1h6u_A 119 ITDVTP-LAGLSNLQVLYLDLNQI-TNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LA 192 (308)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GG
T ss_pred CCCchh-hcCCCCCCEEECCCCcc-CcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hc
Confidence 999875 89999999999999864 555669999999999999999998877 8999999999999998 667765 78
Q ss_pred CCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCC
Q 001897 653 RLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 653 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
.+++|++|++++|.+.. ...+..+++|+.|+++.+.+..
T Consensus 193 ~l~~L~~L~L~~N~l~~------------~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 193 SLPNLIEVHLKNNQISD------------VSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GCTTCCEEECTTSCCCB------------CGGGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEEccCCccCc------------cccccCCCCCCEEEccCCeeec
Confidence 99999999999998742 1247889999999998887654
No 87
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=8.1e-16 Score=167.53 Aligned_cols=178 Identities=17% Similarity=0.194 Sum_probs=99.1
Q ss_pred ceEEEeecCCcc--ccCCCCC-------CCCcceEEEecCCCCCCCCChhhh-cCCCCccEEEcCCCCCCCCChhhhcc-
Q 001897 515 LKRVSFMNNSIT--KLPDCKV-------HCPETLTLLLQGNFPLGRVPEKFL-DGFPALRVLNLSGTRIHSLPLSLLQL- 583 (998)
Q Consensus 515 l~~l~l~~~~~~--~l~~~~~-------~~~~l~~L~l~~~~~~~~l~~~~~-~~l~~Lr~L~l~~~~~~~lp~~i~~l- 583 (998)
++++++.+|.+. .+|.... .+++|+.|++++|.....+|..+| ..+++|++|++++|.+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 555555555553 2333222 356666666666643334555443 56666677777666666666666655
Q ss_pred ----cCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcc---cChhh--hcCcCCcEEeCCCCcccc---cccccc
Q 001897 584 ----HNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRE---LPRGM--ENLSNLRRLNLSRTHYLK---KIQAGI 650 (998)
Q Consensus 584 ----~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~l~---~~p~~~ 650 (998)
++|++|++++|......| .++++++|++|++++|.+.. +|..+ +.+++|++|++++|. +. .++...
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 223 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSAL 223 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHH
Confidence 666677766666544444 46666666777776666542 33343 566666666666665 33 223333
Q ss_pred cCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCC
Q 001897 651 ICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIP 702 (998)
Q Consensus 651 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 702 (998)
+.++++|++|++++|.+.... ....+..+++|+.|+++.+.+.
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~---------~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAA---------GAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSC---------CCSCCCCCTTCCEEECTTSCCS
T ss_pred HhcCCCCCEEECCCCcCCccc---------chhhhhhcCCCCEEECCCCccC
Confidence 445666666666666553211 0123334556666666555544
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=2.4e-15 Score=174.02 Aligned_cols=213 Identities=14% Similarity=0.098 Sum_probs=161.4
Q ss_pred cccceEEEeecCCccccC-CCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEe
Q 001897 512 VNSLKRVSFMNNSITKLP-DCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALL 590 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~l~-~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 590 (998)
.+++++|++++|.+..++ ..+..+++|++|++++| .+...++ +..+++|++|++++|.+..+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 348999999999998776 46677999999999999 4544444 6899999999999999987764 38999999
Q ss_pred ecCCCCCCCCccccCCCCCCeeeecCCCCccc-ChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccc
Q 001897 591 LRDCFYLEDLPALGGLTKLQDLDLSATSIREL-PRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHW 669 (998)
Q Consensus 591 L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 669 (998)
+++|......+ ..+++|++|++++|.++.+ |..++.+++|++|++++|......|....+.+++|+.|++++|.+..
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99987654444 3468899999999999976 55789999999999999985444555533489999999999998742
Q ss_pred cccCcccccccccccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCC---CCCCCCccccEEEEecccCc
Q 001897 670 RVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTA---NSLPTKHDERRVTISGIDLS 746 (998)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~L~~L~l~~~~l~ 746 (998)
. .....+++|+.|+++.+.+....+. +..+++|+.|++..+.+. ..+..+++|+.|++++|.+.
T Consensus 184 ~------------~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 V------------KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp E------------ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred c------------cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 2 2344688999999988887764433 666777777777665442 23344456666666666655
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=1.6e-14 Score=155.23 Aligned_cols=174 Identities=22% Similarity=0.328 Sum_probs=148.4
Q ss_pred hhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCce
Q 001897 509 TELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRA 588 (998)
Q Consensus 509 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 588 (998)
....++++.+++.+|.+..++. +..+++|+.|++++| .+..++. +..+++|++|++++|.+..+|. +..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 3456789999999999988864 677999999999999 6666665 6899999999999999998765 899999999
Q ss_pred EeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 589 LLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 589 L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
|++++|. +..++.+..+++|++|++++|.++.+ ..+..+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 117 L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC
Confidence 9999986 45568899999999999999999988 678999999999999997 666665 889999999999999774
Q ss_pred ccccCcccccccccccccccccCceEEEEeecCCCC
Q 001897 669 WRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQ 704 (998)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 704 (998)
.+..+..+++|+.|+++.+.+...
T Consensus 192 ------------~l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 192 ------------DLRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ------------BCGGGTTCTTCSEEEEEEEEEECC
T ss_pred ------------CChhhccCCCCCEEECcCCcccCC
Confidence 124578899999999988876553
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=3e-14 Score=149.71 Aligned_cols=172 Identities=23% Similarity=0.348 Sum_probs=146.5
Q ss_pred cEEeecCCCccccchhhhcccceEEEeecCCccccCC-CCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCC
Q 001897 494 KSLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPD-CKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTR 572 (998)
Q Consensus 494 ~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~ 572 (998)
..+...+..+..+|. ...+.+++|++++|.+..++. .+..+++|++|++++| .+..++...|..+++|++|++++|.
T Consensus 17 ~~l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 17 KEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TEEECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEEecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc
Confidence 345566677777765 345789999999999987765 4667999999999999 6777777778999999999999999
Q ss_pred CCCCCh-hhhcccCCceEeecCCCCCCCCcc-ccCCCCCCeeeecCCCCcccCh-hhhcCcCCcEEeCCCCccccccccc
Q 001897 573 IHSLPL-SLLQLHNCRALLLRDCFYLEDLPA-LGGLTKLQDLDLSATSIRELPR-GMENLSNLRRLNLSRTHYLKKIQAG 649 (998)
Q Consensus 573 ~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~ 649 (998)
+..+|. .+..+++|++|+|++|......+. +..+++|++|++++|.++.+|. .++.+++|++|++++|. +..++..
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 173 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHG 173 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHH
Confidence 998875 578999999999999876544443 7999999999999999999987 58899999999999998 6777776
Q ss_pred ccCCCCCccEEEcccCccc
Q 001897 650 IICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 650 ~l~~l~~L~~L~l~~~~~~ 668 (998)
.+..+++|+.|++++|.+.
T Consensus 174 ~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTCTTCCEEECCSCCBC
T ss_pred HHhCCCCCCEEEeeCCcee
Confidence 6899999999999999874
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=1.1e-14 Score=151.94 Aligned_cols=205 Identities=18% Similarity=0.276 Sum_probs=152.4
Q ss_pred ccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCC-CCCCCh-hhhcccCCceEeecCCCCCCCCc-
Q 001897 525 ITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTR-IHSLPL-SLLQLHNCRALLLRDCFYLEDLP- 601 (998)
Q Consensus 525 ~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~-~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp- 601 (998)
+..+|. + .++++.|++++| .+..++...|.++++|++|++++|. +..+|. .+..+++|++|++++|..++.+|
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-C--CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 677777 3 348899999998 6788888778999999999999997 888876 68899999999999833445555
Q ss_pred -cccCCCCCCeeeecCCCCcccChhhhcCcCCc---EEeCCCCcccccccccccCCCCCcc-EEEcccCcccccccCccc
Q 001897 602 -ALGGLTKLQDLDLSATSIRELPRGMENLSNLR---RLNLSRTHYLKKIQAGIICRLSSLE-ILDMTLSDYHWRVKGQED 676 (998)
Q Consensus 602 -~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~~p~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~ 676 (998)
.+..+++|++|++++|.++.+|. +..+++|+ +|++++|..+..+|...+.++++|+ .|++++|.+. .++.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~--- 173 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG--- 173 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT---
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH---
Confidence 58899999999999999999987 88888888 9999999447888887789999999 9999998774 2220
Q ss_pred ccccccccccccccCceEEEEeec-CCCCCCCchhHhcccceeEEeecCCCCCCCCC-ccccEEEEecccCchhhHHHhh
Q 001897 677 EGQTNFEELGCLERLLVLSIRLEN-IPSQGTEDLTWIGRLRSFQFFIGPTANSLPTK-HDERRVTISGIDLSGEWIGWLL 754 (998)
Q Consensus 677 ~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~ 754 (998)
..+.. ++|+.|+++.+. +.......+. .+ .+|+.|++++|.++. .+...+
T Consensus 174 ------~~~~~-~~L~~L~L~~n~~l~~i~~~~~~--------------------~l~~~L~~L~l~~N~l~~-l~~~~~ 225 (239)
T 2xwt_C 174 ------YAFNG-TKLDAVYLNKNKYLTVIDKDAFG--------------------GVYSGPSLLDVSQTSVTA-LPSKGL 225 (239)
T ss_dssp ------TTTTT-CEEEEEECTTCTTCCEECTTTTT--------------------TCSBCCSEEECTTCCCCC-CCCTTC
T ss_pred ------hhcCC-CCCCEEEcCCCCCcccCCHHHhh--------------------ccccCCcEEECCCCcccc-CChhHh
Confidence 12222 577888776653 4433233333 33 456666666666553 222256
Q ss_pred hcCceeeccccc
Q 001897 755 TNASSLILNNCW 766 (998)
Q Consensus 755 ~~L~~L~L~~c~ 766 (998)
++|+.|.+.++.
T Consensus 226 ~~L~~L~l~~~~ 237 (239)
T 2xwt_C 226 EHLKELIARNTW 237 (239)
T ss_dssp TTCSEEECTTC-
T ss_pred ccCceeeccCcc
Confidence 788888887754
No 92
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=7.9e-14 Score=144.01 Aligned_cols=150 Identities=24% Similarity=0.323 Sum_probs=129.1
Q ss_pred ceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChh-hhcccCCceEeecC
Q 001897 515 LKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLS-LLQLHNCRALLLRD 593 (998)
Q Consensus 515 l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~ 593 (998)
...++..++.+..+|..+. ++++.|++++| .+..++...|..+++|++|++++|.+..+|.. +..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4467788888888887664 88999999998 56667666779999999999999999998864 68999999999999
Q ss_pred CCCCCCCc-cccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 594 CFYLEDLP-ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 594 ~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
|......+ .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..++...+..+++|+.|++.+|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 87655444 4789999999999999999999999999999999999997 77888777899999999999998764
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=6.1e-14 Score=155.27 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=62.9
Q ss_pred CCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCCCCCc--cccCCCCCCe-eeecCCCCcccC
Q 001897 548 PLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP--ALGGLTKLQD-LDLSATSIRELP 623 (998)
Q Consensus 548 ~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp--~i~~l~~L~~-L~l~~~~l~~lp 623 (998)
.+..+|.++ .++++.|+|++|.|+.+|. .|.++++|++|+|++|...+.+| .+.++++|+. +.+++|++..+|
T Consensus 20 ~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 20 KVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 444555443 2356666666666666664 35666666666666665555444 3566666554 344445666654
Q ss_pred h-hhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEccc
Q 001897 624 R-GMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTL 664 (998)
Q Consensus 624 ~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~ 664 (998)
. .+..+++|++|++++|. +..+|...+....++..|++.+
T Consensus 97 ~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp TTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEES
T ss_pred chhhhhccccccccccccc-cccCCchhhcccchhhhhhhcc
Confidence 3 35666666666666665 4445443334444555555543
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=4e-14 Score=144.13 Aligned_cols=170 Identities=24% Similarity=0.338 Sum_probs=125.1
Q ss_pred eEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChh-hhcccCCceEeecCC
Q 001897 516 KRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLS-LLQLHNCRALLLRDC 594 (998)
Q Consensus 516 ~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~ 594 (998)
+.+...++.+..+|..+ .++++.|++++| .+..++...|..+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 35566666677777654 357888888888 56677777778888888888888888887764 578888888888888
Q ss_pred CCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccccccc
Q 001897 595 FYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVK 672 (998)
Q Consensus 595 ~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 672 (998)
......+ .+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+.++++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee----
Confidence 6554444 378888888888888888887765 6788888888888887 66677666788888888888887652
Q ss_pred CcccccccccccccccccCceEEEEeecCCCCCC
Q 001897 673 GQEDEGQTNFEELGCLERLLVLSIRLENIPSQGT 706 (998)
Q Consensus 673 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 706 (998)
+.+++|+.|.++.+.+....+
T Consensus 162 -------------~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 162 -------------CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp -------------CCTTTTHHHHHHHHHCTTTBB
T ss_pred -------------cCCCCHHHHHHHHHhCCceee
Confidence 234456666665555554433
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=4e-14 Score=166.90 Aligned_cols=174 Identities=24% Similarity=0.314 Sum_probs=134.3
Q ss_pred hhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCce
Q 001897 509 TELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRA 588 (998)
Q Consensus 509 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 588 (998)
...++.++.|++.++.+..++ .+..+++|+.|++++| .+..++. +..+++|+.|+|++|.+..+| .+..+++|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 344667888888888887776 4667888888888888 5566665 578888888888888888776 6888888888
Q ss_pred EeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 589 LLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 589 L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
|+|++|.. ..++.+..+++|+.|+|++|.+..+ ..+..|++|+.|+|++|. +..+++ +..+++|+.|++++|.+.
T Consensus 114 L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGI-SDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCC-CCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCC-CCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC
Confidence 88888764 4567788888888888888888877 568888888888888887 555554 788888888888888763
Q ss_pred ccccCcccccccccccccccccCceEEEEeecCCCC
Q 001897 669 WRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQ 704 (998)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 704 (998)
. +..+..+++|+.|+++.+.+...
T Consensus 189 ~------------l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 D------------LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp B------------CGGGTTCTTCSEEECCSEEEECC
T ss_pred C------------ChHHccCCCCCEEEccCCcCcCC
Confidence 1 24577788888888877665544
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1.1e-13 Score=141.78 Aligned_cols=149 Identities=23% Similarity=0.331 Sum_probs=119.9
Q ss_pred eEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC-ChhhhcccCCceEeecCC
Q 001897 516 KRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL-PLSLLQLHNCRALLLRDC 594 (998)
Q Consensus 516 ~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 594 (998)
+.++..++.+..+|..+. ++++.|++++| .+..++...|..+++|++|++++|.+..+ |..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456777788888887654 67888888888 66777776778889999999999998876 668889999999999988
Q ss_pred CCCCCCcc-ccCCCCCCeeeecCCCCcccC-hhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 595 FYLEDLPA-LGGLTKLQDLDLSATSIRELP-RGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 595 ~~~~~lp~-i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
......+. +..+++|++|++++|.++.++ ..+..+++|++|++++|. +..++.+.+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 75544443 788999999999999888774 558888999999999887 66777766888899999999888763
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=3.2e-15 Score=165.04 Aligned_cols=125 Identities=21% Similarity=0.226 Sum_probs=78.4
Q ss_pred ceEEEecCCCCCCCCChhhhcCC--CCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCC-Cc-cccCCCCCCeee
Q 001897 538 TLTLLLQGNFPLGRVPEKFLDGF--PALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLED-LP-ALGGLTKLQDLD 613 (998)
Q Consensus 538 l~~L~l~~~~~~~~l~~~~~~~l--~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-lp-~i~~l~~L~~L~ 613 (998)
.+.++++++. +. +..+..+ +.+++|++++|.+...+..+..+++|++|++++|..... +| .+..+++|++|+
T Consensus 49 ~~~l~l~~~~-~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKN-LH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCB-CC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeecccccc-CC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4466666552 21 3334555 677777777777776666666777777777777653322 44 466777777777
Q ss_pred ecCCCCc-ccChhhhcCcCCcEEeCCCCccccc--ccccccCCCCCccEEEcccC-cc
Q 001897 614 LSATSIR-ELPRGMENLSNLRRLNLSRTHYLKK--IQAGIICRLSSLEILDMTLS-DY 667 (998)
Q Consensus 614 l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~l~~L~~L~l~~~-~~ 667 (998)
+++|.+. ..|..+..+++|++|++++|..+.. ++.. +.++++|++|++++| .+
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCc
Confidence 7777666 4556666777777777777733432 3332 566777777777766 44
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=9.6e-14 Score=139.81 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=104.0
Q ss_pred hcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCC-CChhhhcccCCceE
Q 001897 511 LVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHS-LPLSLLQLHNCRAL 589 (998)
Q Consensus 511 ~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~l~~L~~L 589 (998)
..++++++++++|.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .|..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3567888888888887777 5666777888887777 444443 25677777888887777764 56667777777777
Q ss_pred eecCCCCCCCCc-cccCCCCCCeeeecCCC-CcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcc
Q 001897 590 LLRDCFYLEDLP-ALGGLTKLQDLDLSATS-IRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 590 ~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
++++|......| .++.+++|++|++++|. +..+| .+..+++|++|++++|. +..++ . +..+++|++|++++|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~-l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-G-IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-T-GGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-H-hccCCCCCEEEeeCccc
Confidence 777776555444 57777777777777776 66665 57777777777777776 55555 2 67777777777777654
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=1.5e-14 Score=159.64 Aligned_cols=176 Identities=20% Similarity=0.191 Sum_probs=129.4
Q ss_pred ccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCC-CChhhhcCCCCccEEEcCCCCCC-CCChhhhcccCCceEe
Q 001897 513 NSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGR-VPEKFLDGFPALRVLNLSGTRIH-SLPLSLLQLHNCRALL 590 (998)
Q Consensus 513 ~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~-l~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~ 590 (998)
..++.+++.+|.+...+...+.+++|+.|++++|..... ++ ..+..+++|++|++++|.+. ..|..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 578888888888877666677788999999988842222 33 34688889999999998877 5667788889999999
Q ss_pred ecCCCCCCC--Cc-cccCCCCCCeeeecCC-CCcc--cChhhhcCc-CCcEEeCCCCc-cc--ccccccccCCCCCccEE
Q 001897 591 LRDCFYLED--LP-ALGGLTKLQDLDLSAT-SIRE--LPRGMENLS-NLRRLNLSRTH-YL--KKIQAGIICRLSSLEIL 660 (998)
Q Consensus 591 L~~~~~~~~--lp-~i~~l~~L~~L~l~~~-~l~~--lp~~i~~L~-~L~~L~l~~~~-~l--~~~p~~~l~~l~~L~~L 660 (998)
+++|..++. ++ .+.++++|++|++++| .++. +|..+..++ +|++|++++|. .+ ..+|.. +.++++|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEE
Confidence 998855553 45 3788889999999988 8873 677788888 99999998884 12 334443 6788899999
Q ss_pred EcccCcccccccCcccccccccccccccccCceEEEEee
Q 001897 661 DMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLE 699 (998)
Q Consensus 661 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 699 (998)
++++|.... ...+..+..+++|+.|+++.+
T Consensus 228 ~l~~~~~l~---------~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 228 DLSDSVMLK---------NDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ECTTCTTCC---------GGGGGGGGGCTTCCEEECTTC
T ss_pred eCCCCCcCC---------HHHHHHHhCCCCCCEeeCCCC
Confidence 988886311 112345666777777777554
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=2.3e-13 Score=139.53 Aligned_cols=149 Identities=21% Similarity=0.312 Sum_probs=118.4
Q ss_pred eEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCC-ChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecC
Q 001897 516 KRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRV-PEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRD 593 (998)
Q Consensus 516 ~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l-~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~ 593 (998)
+.++++++.+..+|..+. ..++.|++++| .+..+ +..+|..+++|++|++++|.++.++. .+..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 478888888888887653 45678888888 45555 45567888999999999999887766 788899999999998
Q ss_pred CCCCCCCc-cccCCCCCCeeeecCCCCccc-ChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 594 CFYLEDLP-ALGGLTKLQDLDLSATSIREL-PRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 594 ~~~~~~lp-~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
|......| .+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 87665555 488899999999999988877 5668888999999999887 56665555888999999999888764
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=7.8e-15 Score=165.17 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=38.6
Q ss_pred hhcCceeecccccCchhhhhhhhhccc--ccCCCCCEEEEeCCCCccccCCCCCCCC-CCCCCcceeecccccccc
Q 001897 754 LTNASSLILNNCWGLDQMLETLVIDSV--GAFASLKSLTIAGSRSSLRPIGGCAAHD-DLLPNLEELHLHDLAYLG 826 (998)
Q Consensus 754 ~~~L~~L~L~~c~~l~~~~~~~~~~~l--~~l~~L~~L~L~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~l~ 826 (998)
+++|++|+|++|.-..... ...+..+ +.+++|+.|+|++|.+........+... ..+|+|++|+|++|+...
T Consensus 243 ~~~L~~L~L~~n~i~~~~~-~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGA-AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CTTCCEEECTTCCCCHHHH-HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCCcCEEECCCCCCchhhH-HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 4566677776664321111 1112223 3478888888888877651000001111 346888888888885443
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=3.7e-14 Score=157.94 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=62.2
Q ss_pred hhhcCCCCccEEEcCCCCCCCCC-----hhhhccc-CCceEeecCCCCCCCCc-cccCC-----CCCCeeeecCCCCccc
Q 001897 555 KFLDGFPALRVLNLSGTRIHSLP-----LSLLQLH-NCRALLLRDCFYLEDLP-ALGGL-----TKLQDLDLSATSIREL 622 (998)
Q Consensus 555 ~~~~~l~~Lr~L~l~~~~~~~lp-----~~i~~l~-~L~~L~L~~~~~~~~lp-~i~~l-----~~L~~L~l~~~~l~~l 622 (998)
.++...++|++|++++|.+...+ ..+..++ +|++|+|++|......+ .+..+ ++|++|++++|.++..
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 34444555677777766666554 3455566 66777776665444333 33332 6677777777666644
Q ss_pred Chh-----hhcC-cCCcEEeCCCCcccccccccc----cCC-CCCccEEEcccCcc
Q 001897 623 PRG-----MENL-SNLRRLNLSRTHYLKKIQAGI----ICR-LSSLEILDMTLSDY 667 (998)
Q Consensus 623 p~~-----i~~L-~~L~~L~l~~~~~l~~~p~~~----l~~-l~~L~~L~l~~~~~ 667 (998)
+.. +..+ ++|++|++++|. +...+... +.. .++|++|++++|.+
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 332 3333 567777776666 33333221 223 24677777766655
No 103
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.46 E-value=3.5e-12 Score=141.50 Aligned_cols=285 Identities=15% Similarity=0.110 Sum_probs=169.0
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC------CHHHHHHH
Q 001897 156 HQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL------NLRWVQAQ 229 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~------~~~~~~~~ 229 (998)
.+.||+++++++.+++... +++.|+|++|+|||||++++++.. . .+|+++.... +...+.+.
T Consensus 13 ~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 13 DIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---------P-GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---------S-EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---------C-cEEEEeecccccccCCCHHHHHHH
Confidence 4567888888888887654 799999999999999999998752 1 6788775432 56666676
Q ss_pred HHHHhcC-----------------Ccc-hhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc---------cccccCCCC
Q 001897 230 IAERLNL-----------------DVK-MEESMQRLGIRLHERLLRESNFLLILDDVWETID---------LDSLGVPQP 282 (998)
Q Consensus 230 i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~---------~~~l~~~l~ 282 (998)
+.+.+.. ..+ ...+.......+.+.....++++|||||++.... +..+....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~- 159 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY- 159 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-
Confidence 6665542 000 0123344444444444322389999999987543 11111111
Q ss_pred CCCCCcEEEEecCChHH-Hhh----------c-CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCC
Q 001897 283 EDHGGSKIILTSRSLEV-CMA----------M-KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGL 350 (998)
Q Consensus 283 ~~~~gs~iivTtR~~~v-~~~----------~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 350 (998)
....+.++|+|++...+ ... . .....+++.+|+.+|+.+++.+........ .-.+.+.+|++.++|+
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLDGI 238 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHTTC
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCC
Confidence 11247789999987653 211 1 112479999999999999998765322111 2245778999999999
Q ss_pred hHHHHHHHHHhcCCCCHHHHH-HHHHHHhhcCCCcccchhhhHHHHHhccccc---chhhHHHHhhhccCCCCCccCHHH
Q 001897 351 PLAIITMGTAMRGKTNVKLWK-HALKEWQKSVPCIKGIENNVYNSLKWSYDAL---EGNSKYCFLYCSLFPEDFSIEESE 426 (998)
Q Consensus 351 Plai~~~~~~l~~~~~~~~w~-~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~lk~cfl~~a~fp~~~~i~~~~ 426 (998)
|+++..++..+....+...+. ...+. +...+.-.+..+ ++..+..+..+|. + .++...
T Consensus 239 P~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~ 300 (350)
T 2qen_A 239 PGWLVVFGVEYLRNGDFGRAMKRTLEV--------------AKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSL 300 (350)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHH
T ss_pred HHHHHHHHHHHhccccHhHHHHHHHHH--------------HHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHH
Confidence 999999887643211222111 11111 111111112222 6788889988887 2 134445
Q ss_pred HHHHHHHhCCcccccchhHHHHhHhHHhhhhhhccccccCCCcCeEEE-ccchhhH
Q 001897 427 LVRYWLAEGLIDEQENHEDSFNRGISLIENLKDHCLLEDGASEGTVKI-HDVVRDV 481 (998)
Q Consensus 427 li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~m-Hdlv~d~ 481 (998)
+.....+.. -. . . ......+++.|.+..++... .+.|.+ |.+++++
T Consensus 301 l~~~~~~~~-~~-~-~----~~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 301 IRDYLAVKG-TK-I-P----EPRLYALLENLKKMNWIVEE--DNTYKIADPVVATV 347 (350)
T ss_dssp HHHHHHHTT-CC-C-C----HHHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHH
T ss_pred HHHHHHHHh-CC-C-C----HHHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHH
Confidence 444332211 00 0 0 12244578889999998753 246766 4555554
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=1.1e-14 Score=164.11 Aligned_cols=266 Identities=14% Similarity=0.058 Sum_probs=150.1
Q ss_pred hcCCCCccEEEcCCCCCCC-----CChhhhcccCCceEeecCCCCC---CCCc-c-------ccCCCCCCeeeecCCCCc
Q 001897 557 LDGFPALRVLNLSGTRIHS-----LPLSLLQLHNCRALLLRDCFYL---EDLP-A-------LGGLTKLQDLDLSATSIR 620 (998)
Q Consensus 557 ~~~l~~Lr~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~---~~lp-~-------i~~l~~L~~L~l~~~~l~ 620 (998)
+..+++|++|++++|.+.. ++..+..+++|++|+|++|... ..+| . +..+++|++|+|++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3567778888888887763 3344667788888888776322 1233 2 367778888888887776
Q ss_pred c-----cChhhhcCcCCcEEeCCCCccccc----ccccccCCC---------CCccEEEcccCcccccccCccccccccc
Q 001897 621 E-----LPRGMENLSNLRRLNLSRTHYLKK----IQAGIICRL---------SSLEILDMTLSDYHWRVKGQEDEGQTNF 682 (998)
Q Consensus 621 ~-----lp~~i~~L~~L~~L~l~~~~~l~~----~p~~~l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 682 (998)
. +|..+..+++|++|++++|..... ++.. +..+ ++|++|++++|.+.... .....
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~l~ 180 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA-LQELAVNKKAKNAPPLRSIICGRNRLENGS------MKEWA 180 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH-HHHHHHHHHHHTCCCCCEEECCSSCCTGGG------HHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH-HHHHhhhhhcccCCCCcEEECCCCCCCcHH------HHHHH
Confidence 4 666777778888888877763211 1111 2333 67777777776653100 00011
Q ss_pred ccccccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhh----HH-H--hhh
Q 001897 683 EELGCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEW----IG-W--LLT 755 (998)
Q Consensus 683 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~----~~-~--~~~ 755 (998)
..+..+++|+.|+++.+ .++... .. . .++
T Consensus 181 ~~l~~~~~L~~L~L~~n--------------------------------------------~l~~~g~~~l~~~~l~~~~ 216 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQN--------------------------------------------GIRPEGIEHLLLEGLAYCQ 216 (386)
T ss_dssp HHHHHCTTCCEEECCSS--------------------------------------------CCCHHHHHHHHHTTGGGCT
T ss_pred HHHHhCCCcCEEECcCC--------------------------------------------CCCHhHHHHHHHHHhhcCC
Confidence 23344445555554433 333211 11 1 245
Q ss_pred cCceeecccccCchhhhhhhhhcccccCCCCCEEEEeCCCCccccCCCCCCCC--CCCCCcceeecccccccc----ccc
Q 001897 756 NASSLILNNCWGLDQMLETLVIDSVGAFASLKSLTIAGSRSSLRPIGGCAAHD--DLLPNLEELHLHDLAYLG----NIS 829 (998)
Q Consensus 756 ~L~~L~L~~c~~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~l~----~~~ 829 (998)
+|+.|+|++|.-.... ....+..+..+++|+.|+|++|.+........+... ..+++|++|+|++|.... .+|
T Consensus 217 ~L~~L~Ls~n~l~~~g-~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLG-SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TCCEEECCSSCCHHHH-HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CccEEECcCCCCCcHH-HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 6666666665421110 011234557789999999999987543111011111 347999999999996444 255
Q ss_pred cccccccccCCCccEEEeecCcccccccc-hhHHHhhCCCCCEEEEeccc
Q 001897 830 GLVGYLGLRFSKLRLMEVTQCPRLKYLLT-YGSFILALPNLQEIKVSFCD 878 (998)
Q Consensus 830 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~~l~~L~~L~l~~c~ 878 (998)
.... ..+++|+.|++++|+ ++.... .......++.++.+++....
T Consensus 296 ~~l~---~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~~d 341 (386)
T 2ca6_A 296 TVID---EKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDELD 341 (386)
T ss_dssp HHHH---HHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECCCC
T ss_pred HHHH---hcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhhcc
Confidence 4331 147999999999975 433332 12233445666655554433
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=6.2e-13 Score=142.78 Aligned_cols=165 Identities=21% Similarity=0.368 Sum_probs=142.3
Q ss_pred cEEeecCCCccccchhhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 494 KSLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 494 ~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
..+...+..+..++.....+++++|++++|.+..++. +..+++|+.|++++| .+..++. +..+++|++|++++|.+
T Consensus 49 ~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n~i 124 (291)
T 1h6t_A 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHNGI 124 (291)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG--GTTCTTCCEEECTTSCC
T ss_pred cEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh--hccCCCCCEEECCCCcC
Confidence 4455566666666666667899999999999998877 778999999999999 5666664 68999999999999999
Q ss_pred CCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCC
Q 001897 574 HSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICR 653 (998)
Q Consensus 574 ~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~ 653 (998)
..+ ..+..+++|++|++++|.. ..++.++.+++|++|++++|.++.++. +..+++|++|++++|. +..++. +..
T Consensus 125 ~~~-~~l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~--l~~ 198 (291)
T 1h6t_A 125 SDI-NGLVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA--LAG 198 (291)
T ss_dssp CCC-GGGGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG--GTT
T ss_pred CCC-hhhcCCCCCCEEEccCCcC-CcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCChh--hcc
Confidence 987 4789999999999999864 445889999999999999999998877 9999999999999997 677764 899
Q ss_pred CCCccEEEcccCccc
Q 001897 654 LSSLEILDMTLSDYH 668 (998)
Q Consensus 654 l~~L~~L~l~~~~~~ 668 (998)
+++|+.|++++|.+.
T Consensus 199 l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 199 LKNLDVLELFSQECL 213 (291)
T ss_dssp CTTCSEEEEEEEEEE
T ss_pred CCCCCEEECcCCccc
Confidence 999999999998764
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=4.2e-13 Score=136.53 Aligned_cols=167 Identities=23% Similarity=0.331 Sum_probs=138.2
Q ss_pred EeecCCCccccchhhhcccceEEEeecCCccccCCCC-CCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC
Q 001897 496 LVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCK-VHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH 574 (998)
Q Consensus 496 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~ 574 (998)
+...+.++..+|. ...+++++|++++|.+..++... ..+++|++|++++| .+..++...|..+++|++|++++|.+.
T Consensus 12 v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 12 VECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCC
Confidence 3445555555553 34568999999999999888754 56999999999998 677888888899999999999999999
Q ss_pred CCChh-hhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCccccccccccc
Q 001897 575 SLPLS-LLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGII 651 (998)
Q Consensus 575 ~lp~~-i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l 651 (998)
.+|.. +..+++|++|++++|......+ .+.++++|++|++++|.++.+|.. +..+++|++|++++|.. .
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~ 161 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------D 161 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------C
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------e
Confidence 88875 6899999999999987655555 489999999999999999988876 78899999999999863 3
Q ss_pred CCCCCccEEEcccCccccccc
Q 001897 652 CRLSSLEILDMTLSDYHWRVK 672 (998)
Q Consensus 652 ~~l~~L~~L~l~~~~~~~~~~ 672 (998)
+.+++|+.|++..|.+...++
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBB
T ss_pred cCCCCHHHHHHHHHhCCceee
Confidence 567789999988887765444
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=2e-13 Score=151.74 Aligned_cols=149 Identities=21% Similarity=0.278 Sum_probs=92.5
Q ss_pred eEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhc-CCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecC
Q 001897 516 KRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLD-GFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRD 593 (998)
Q Consensus 516 ~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~-~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~ 593 (998)
+.++++++.+..+|..+. ..++.|++++| .+..++...|. .+++|++|+|++|.+..++. .+..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 355666666666665443 34566666666 45555555555 66777777777777766653 466677777777777
Q ss_pred CCCCCCCc-cccCCCCCCeeeecCCCCccc-ChhhhcCcCCcEEeCCCCccccccccccc---CCCCCccEEEcccCccc
Q 001897 594 CFYLEDLP-ALGGLTKLQDLDLSATSIREL-PRGMENLSNLRRLNLSRTHYLKKIQAGII---CRLSSLEILDMTLSDYH 668 (998)
Q Consensus 594 ~~~~~~lp-~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l---~~l~~L~~L~l~~~~~~ 668 (998)
|......+ .+..+++|++|+|++|.+..+ |..+..+++|++|++++|. +..+|...+ ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 65443333 366677777777777776655 3456667777777777665 555665544 45667777777766653
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=3.2e-13 Score=135.99 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=116.0
Q ss_pred CCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCee
Q 001897 534 HCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDL 612 (998)
Q Consensus 534 ~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L 612 (998)
.+++++.|++++| .+..++ . +..+++|++|++++|.+..++ .+..+++|++|++++|......| .++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCC-CccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4678888888887 566777 3 578889999999988776654 78888999999999887655444 68888999999
Q ss_pred eecCCCCcc-cChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccC
Q 001897 613 DLSATSIRE-LPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERL 691 (998)
Q Consensus 613 ~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 691 (998)
++++|.++. .|..++.+++|++|++++|..+..+|. +..+++|+.|++++|.+.. +..+..+++|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~------------~~~l~~l~~L 183 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD------------YRGIEDFPKL 183 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC------------CTTGGGCSSC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC------------hHHhccCCCC
Confidence 999988884 677788889999999988875677763 7888899999998887631 2356777888
Q ss_pred ceEEEEeecCC
Q 001897 692 LVLSIRLENIP 702 (998)
Q Consensus 692 ~~L~l~~~~~~ 702 (998)
+.|+++.+.+.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 88888766543
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=3.2e-13 Score=146.86 Aligned_cols=178 Identities=19% Similarity=0.166 Sum_probs=129.1
Q ss_pred cccceEEEeecCCcc-ccCCCC--CCCCcceEEEecCCCCCCCCC---hhhhcCCCCccEEEcCCCCCCCCC-hhhhccc
Q 001897 512 VNSLKRVSFMNNSIT-KLPDCK--VHCPETLTLLLQGNFPLGRVP---EKFLDGFPALRVLNLSGTRIHSLP-LSLLQLH 584 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~-~l~~~~--~~~~~l~~L~l~~~~~~~~l~---~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~ 584 (998)
..+++++++++|.+. ..|..+ ..+++|++|++++|......+ ...+..+++|++|++++|.+..+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 356889999999887 455555 668899999999884433322 122357889999999999988766 5788899
Q ss_pred CCceEeecCCCCCCC--Cc---cccCCCCCCeeeecCCCCcccChh----hhcCcCCcEEeCCCCcccccccccccCCC-
Q 001897 585 NCRALLLRDCFYLED--LP---ALGGLTKLQDLDLSATSIRELPRG----MENLSNLRRLNLSRTHYLKKIQAGIICRL- 654 (998)
Q Consensus 585 ~L~~L~L~~~~~~~~--lp---~i~~l~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~~p~~~l~~l- 654 (998)
+|++|+|++|..... ++ .++.+++|++|++++|+++.+|.. ++.+++|++|++++|......|.. +..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence 999999999875442 22 247889999999999998877653 567899999999998844434655 5555
Q ss_pred --CCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCC
Q 001897 655 --SSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 655 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
++|++|++++|.+. .++ ..+. ++|+.|+++.|.+..
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp----------~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVP----------KGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCC----------SCCC--SCCSCEECCSCCCCS
T ss_pred CcCcCCEEECCCCCCC-chh----------hhhc--CCCCEEECCCCcCCC
Confidence 69999999988875 222 2222 678888887776654
No 110
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.45 E-value=1.4e-12 Score=148.38 Aligned_cols=303 Identities=14% Similarity=0.115 Sum_probs=174.3
Q ss_pred ccchHHHHHHHHHhh-c----C--CCceEEEE--EeCCCChHHHHHHHHHHHhhhccccCCCC-eEEEEEeCCCCCHHHH
Q 001897 157 QTTASKTLGKLMKLL-D----C--DEIRRIGI--WGLGGIGKTTLVKNLNNILKRDSSAHRSG-MVIWATVSKELNLRWV 226 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l-~----~--~~~~vi~I--~G~gG~GKTtLa~~v~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~~ 226 (998)
+.+++++++++..++ . . ...+.+.| +|++|+||||||+.+++..........|+ .++|+.+....+...+
T Consensus 24 l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTI 103 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHH
T ss_pred CCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHH
Confidence 445667777776666 2 2 34556666 99999999999999998764321111122 3678888777889999
Q ss_pred HHHHHHHhcCCcch-hhhHHHHHHHHHHHHH-cCCeEEEEEcccccccc--------cccccCCC---CCCC--CCcEEE
Q 001897 227 QAQIAERLNLDVKM-EESMQRLGIRLHERLL-RESNFLLILDDVWETID--------LDSLGVPQ---PEDH--GGSKII 291 (998)
Q Consensus 227 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~~--------~~~l~~~l---~~~~--~gs~ii 291 (998)
...++.+++..... ..+.......+.+.+. .+++++|||||++.... +..+...+ +..+ ....||
T Consensus 104 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI 183 (412)
T 1w5s_A 104 LSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFL 183 (412)
T ss_dssp HHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEE
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEE
Confidence 99999998764321 1223344445555543 34599999999987421 11111111 1112 345588
Q ss_pred EecCChHHHhhc---------CCCeEEEccCCChHHHHHHHHHhhCC-CCCCCCchHHHHHHHHHcc------CChHHHH
Q 001897 292 LTSRSLEVCMAM---------KTDVEVRVDLLNDDEAWQLFSQNAGV-AASKDPIKPFAQAIARECK------GLPLAII 355 (998)
Q Consensus 292 vTtR~~~v~~~~---------~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~c~------glPlai~ 355 (998)
+||+...+...+ .....+++.+++.++++++|..++.. ......-.+....|++.|+ |.|..+.
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~ 263 (412)
T 1w5s_A 184 LVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAI 263 (412)
T ss_dssp EEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHH
T ss_pred EEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHH
Confidence 788755432111 11234999999999999999876521 1111223567889999999 9997665
Q ss_pred HHHHHh---c---CC--CCHHHHHHHHHHHhhcCCCcccchhhh-HHHHHhcccccchhhHHHHhhhccCC--CCCccCH
Q 001897 356 TMGTAM---R---GK--TNVKLWKHALKEWQKSVPCIKGIENNV-YNSLKWSYDALEGNSKYCFLYCSLFP--EDFSIEE 424 (998)
Q Consensus 356 ~~~~~l---~---~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i-~~~l~~sy~~L~~~lk~cfl~~a~fp--~~~~i~~ 424 (998)
.++... . +. -+.+.+..+.... . ...+.-++..||++.+.++..++.+. .+..+..
T Consensus 264 ~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~-------------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~ 330 (412)
T 1w5s_A 264 VALKMACEMAEAMGRDSLSEDLVRKAVSEN-------------EAASIQTHELEALSIHELIILRLIAEATLGGMEWINA 330 (412)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-------------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccH
Confidence 554321 1 11 1122333322211 1 23455577889999999998888653 2334555
Q ss_pred HHHHHHHH--H-h--CCcccccchhHHHHhHhHHhhhhhhccccccC----CCcCeEEEccch
Q 001897 425 SELVRYWL--A-E--GLIDEQENHEDSFNRGISLIENLKDHCLLEDG----ASEGTVKIHDVV 478 (998)
Q Consensus 425 ~~li~~w~--a-~--g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----~~~~~~~mHdlv 478 (998)
.++...+. + . |. ... . ......+++.|.+..++... ...++|++|++.
T Consensus 331 ~~~~~~~~~~~~~~~~~-~~~-~----~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 331 GLLRQRYEDASLTMYNV-KPR-G----YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHHSCC-CCC-C----HHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHHhhcCC-CCC-C----HHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 55554442 2 1 21 100 0 12244568888888988632 134466677665
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=3.1e-13 Score=149.60 Aligned_cols=204 Identities=13% Similarity=0.101 Sum_probs=143.7
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccCCC-CCCCCcceEEEecCCCCCCCCChhhhcCCCCccE-EEcCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDC-KVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRV-LNLSGTR 572 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~-L~l~~~~ 572 (998)
.+...+.++..+|. ....++++|++++|.+..+|.. +..+++|+.|++++|...+.++...|.++++|.. +.+++|+
T Consensus 13 ~v~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 34556666777775 3456788999999999888875 4568899999999886566777777888877664 5666788
Q ss_pred CCCCC-hhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecC-CCCcccChh-hhcC-cCCcEEeCCCCccccccc
Q 001897 573 IHSLP-LSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSA-TSIRELPRG-MENL-SNLRRLNLSRTHYLKKIQ 647 (998)
Q Consensus 573 ~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~-~~l~~lp~~-i~~L-~~L~~L~l~~~~~l~~~p 647 (998)
+..+| ..+..+++|++|++++|......+ .+....++..|++.+ +.+..+|.. +..+ ..|+.|++++|. +..+|
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEEC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCC
Confidence 88775 467888999999998876544444 355666777888866 477777754 4444 468888888887 67777
Q ss_pred ccccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchh
Q 001897 648 AGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLT 710 (998)
Q Consensus 648 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 710 (998)
.+ +...++|+.|++.+++....++ ...+..+++|+.|+++.+.+.......+.
T Consensus 171 ~~-~f~~~~L~~l~l~~~n~l~~i~---------~~~f~~l~~L~~LdLs~N~l~~lp~~~~~ 223 (350)
T 4ay9_X 171 NS-AFNGTQLDELNLSDNNNLEELP---------NDVFHGASGPVILDISRTRIHSLPSYGLE 223 (350)
T ss_dssp TT-SSTTEEEEEEECTTCTTCCCCC---------TTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred hh-hccccchhHHhhccCCcccCCC---------HHHhccCcccchhhcCCCCcCccChhhhc
Confidence 76 4566788888887644332222 13467788888888887777665544433
No 112
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=149.28 Aligned_cols=181 Identities=14% Similarity=0.075 Sum_probs=121.2
Q ss_pred cceEEEeecCCccc-----cCCCCCCCCcceEEEecCCCCCCCCChhhh-cCCCCccEEEcCCCCCCCC-C----hhhhc
Q 001897 514 SLKRVSFMNNSITK-----LPDCKVHCPETLTLLLQGNFPLGRVPEKFL-DGFPALRVLNLSGTRIHSL-P----LSLLQ 582 (998)
Q Consensus 514 ~l~~l~l~~~~~~~-----l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~-~~l~~Lr~L~l~~~~~~~l-p----~~i~~ 582 (998)
.++++.+.+..+.. +.. ...+++|+.|++++|......|..++ ..+++|++|++++|.+... | ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45667776665431 111 11245688889988854445555444 7788899999999888742 2 24457
Q ss_pred ccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcc---cC--hhhhcCcCCcEEeCCCCccccccccc---ccCC
Q 001897 583 LHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRE---LP--RGMENLSNLRRLNLSRTHYLKKIQAG---IICR 653 (998)
Q Consensus 583 l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~---lp--~~i~~L~~L~~L~l~~~~~l~~~p~~---~l~~ 653 (998)
+++|++|++++|......| .++.+++|++|++++|++.. +| ..++.+++|++|++++|. +..++.. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc
Confidence 8889999999888766665 58888999999999988653 33 234678889999998887 5544431 3567
Q ss_pred CCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCC
Q 001897 654 LSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 654 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
+++|++|++++|.+....+ ..+..+..+++|+.|+++.+.+..
T Consensus 223 l~~L~~L~Ls~N~l~~~~p-------~~~~~~~~~~~L~~L~Ls~N~l~~ 265 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVN-------PSAPRCMWSSALNSLNLSFAGLEQ 265 (310)
T ss_dssp TCCCSSEECTTSCCCCCCC-------SCCSSCCCCTTCCCEECCSSCCCS
T ss_pred CCCCCEEECCCCCCCccch-------hhHHhccCcCcCCEEECCCCCCCc
Confidence 8889999998888743221 112223333688888887776663
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=1.3e-13 Score=145.69 Aligned_cols=166 Identities=20% Similarity=0.232 Sum_probs=100.8
Q ss_pred ceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCC
Q 001897 515 LKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDC 594 (998)
Q Consensus 515 l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 594 (998)
+..+.+..+.+..++ .+..+++++.|++++| .+..++ . +..+++|++|++++|.+..+|. +..+++|++|++++|
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 333444455554444 2344566666666666 455555 2 4566777777777777776665 667777777777766
Q ss_pred CCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCc
Q 001897 595 FYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQ 674 (998)
Q Consensus 595 ~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 674 (998)
.. +.+|.+.. ++|++|++++|.++.+| .+..+++|++|++++|. +..++. ++.+++|+.|++++|.+..
T Consensus 96 ~l-~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~----- 164 (263)
T 1xeu_A 96 RL-KNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN----- 164 (263)
T ss_dssp CC-SCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB-----
T ss_pred cc-CCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc-----
Confidence 53 33444333 66777777777776664 46667777777777766 555542 6667777777777766531
Q ss_pred ccccccccccccccccCceEEEEeecCCC
Q 001897 675 EDEGQTNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 675 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
...+..+++|+.|+++.+.+..
T Consensus 165 -------~~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 -------TGGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -------CTTSTTCCCCCEEEEEEEEEEC
T ss_pred -------hHHhccCCCCCEEeCCCCcccC
Confidence 1345566667777776655543
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=1e-12 Score=138.66 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=132.8
Q ss_pred ccccchhhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhc
Q 001897 503 LTEVSETELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQ 582 (998)
Q Consensus 503 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~ 582 (998)
+.+++......+++++++.+|.+..++ .+..+++|+.|++++| .+..++. +..+++|++|++++|.+..+|....
T Consensus 31 i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~- 105 (263)
T 1xeu_A 31 VTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS- 105 (263)
T ss_dssp TTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC-
T ss_pred cccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccCCcCcccc-
Confidence 344444455678999999999999888 5778999999999999 6777776 6899999999999999999886444
Q ss_pred ccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEc
Q 001897 583 LHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDM 662 (998)
Q Consensus 583 l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l 662 (998)
++|++|++++|. ++.++.+..+++|++|++++|.++.+| .+..+++|++|++++|. +..++ .+..+++|+.|++
T Consensus 106 -~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~--~l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 -ACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTG--GLTRLKKVNWIDL 179 (263)
T ss_dssp -SSCCEEECCSSC-CSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCT--TSTTCCCCCEEEE
T ss_pred -CcccEEEccCCc-cCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchH--HhccCCCCCEEeC
Confidence 999999999986 455778999999999999999999986 68999999999999998 55553 3899999999999
Q ss_pred ccCccc
Q 001897 663 TLSDYH 668 (998)
Q Consensus 663 ~~~~~~ 668 (998)
++|.+.
T Consensus 180 ~~N~~~ 185 (263)
T 1xeu_A 180 TGQKCV 185 (263)
T ss_dssp EEEEEE
T ss_pred CCCccc
Confidence 998764
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=2.2e-12 Score=150.21 Aligned_cols=189 Identities=18% Similarity=0.200 Sum_probs=133.3
Q ss_pred cceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecC
Q 001897 514 SLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRD 593 (998)
Q Consensus 514 ~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 593 (998)
+++.|++++|.+..+|..+. ++|+.|++++| .+..+| ..+++|++|++++|.++.+|. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQN-ALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCC-CCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 68889999998888887663 78899999888 566777 346889999999999988888 655 899999998
Q ss_pred CCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccC
Q 001897 594 CFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKG 673 (998)
Q Consensus 594 ~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 673 (998)
|.... +|. .+++|++|++++|.++.+|. .+++|++|++++|. +..+|. ++ ++|+.|++++|.+. .++.
T Consensus 130 N~l~~-lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 130 NQLTM-LPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp SCCSC-CCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS-SCCC
T ss_pred CcCCC-CCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC-chhh
Confidence 86544 666 68889999999999988887 57889999999887 666776 44 88999999988774 2220
Q ss_pred cccccccccccc-cccccCceEEEEeecCCCCCCCchhHhcccceeEEeecCCCCCCCCCccccEEEEecccCchhhHHH
Q 001897 674 QEDEGQTNFEEL-GCLERLLVLSIRLENIPSQGTEDLTWIGRLRSFQFFIGPTANSLPTKHDERRVTISGIDLSGEWIGW 752 (998)
Q Consensus 674 ~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 752 (998)
....+ .....|+.|+++.|.+.... .. +..+++|+.|++++|.+++..+..
T Consensus 198 -------~~~~L~~~~~~L~~L~Ls~N~l~~lp-~~--------------------l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 198 -------VPVRNHHSEETEIFFRCRENRITHIP-EN--------------------ILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp -------CC--------CCEEEECCSSCCCCCC-GG--------------------GGGSCTTEEEECCSSSCCHHHHHH
T ss_pred -------HHHhhhcccccceEEecCCCcceecC-HH--------------------HhcCCCCCEEEeeCCcCCCcCHHH
Confidence 00011 11122377777666554321 11 112345667777777777655544
No 116
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=9.3e-12 Score=138.43 Aligned_cols=281 Identities=15% Similarity=0.132 Sum_probs=163.5
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC-----CCHHHHHHHH
Q 001897 156 HQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE-----LNLRWVQAQI 230 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~i 230 (998)
.+.||+++++.+.+ +.. +++.|+|++|+|||||++++++.... ..+|+++... .+.......+
T Consensus 14 ~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL--------PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC--------CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC--------CEEEEEchhhccccCCCHHHHHHHH
Confidence 45678889999988 765 69999999999999999999887421 2578887643 3445555554
Q ss_pred HHHhcC------------------C-----cc------hhhhHHHHHHHHHHHHHcC--CeEEEEEccccccc-----cc
Q 001897 231 AERLNL------------------D-----VK------MEESMQRLGIRLHERLLRE--SNFLLILDDVWETI-----DL 274 (998)
Q Consensus 231 ~~~l~~------------------~-----~~------~~~~~~~~~~~l~~~l~~~--~r~LlVlDdv~~~~-----~~ 274 (998)
.+.+.. + .. ....... +.+.+... ++++|||||++... ++
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFAN----LLESFEQASKDNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHH----HHHHHHHTCSSCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHH----HHHHHHhcCCCCeEEEEECHHHhhccCchhH
Confidence 443310 0 00 0112222 33333321 38999999997642 22
Q ss_pred ccccCCCCCCCCCcEEEEecCChHHHh-h---------c-CC-CeEEEccCCChHHHHHHHHHhhCCC-CCCCCchHHHH
Q 001897 275 DSLGVPQPEDHGGSKIILTSRSLEVCM-A---------M-KT-DVEVRVDLLNDDEAWQLFSQNAGVA-ASKDPIKPFAQ 341 (998)
Q Consensus 275 ~~l~~~l~~~~~gs~iivTtR~~~v~~-~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~ 341 (998)
..+...+.....+.++|+|+|...... . . +. ...+++.+|+.+++.+++.+..... ..... ..
T Consensus 158 ~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~ 233 (357)
T 2fna_A 158 LPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YE 233 (357)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HH
T ss_pred HHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HH
Confidence 111111111124678999999865422 1 1 11 3579999999999999998765311 11122 17
Q ss_pred HHHHHccCChHHHHHHHHHhcCCCCHHHHHH-HHHHHhhcCCCcccchhhhHHHHH-hcc--cccchhhHHHHhhhccCC
Q 001897 342 AIARECKGLPLAIITMGTAMRGKTNVKLWKH-ALKEWQKSVPCIKGIENNVYNSLK-WSY--DALEGNSKYCFLYCSLFP 417 (998)
Q Consensus 342 ~i~~~c~glPlai~~~~~~l~~~~~~~~w~~-~~~~l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~lk~cfl~~a~fp 417 (998)
.|++.|+|+|+++..++..+........|.. ..+.. ...+...+. +.+ ..+++..+..+..+|.
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-- 301 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----------KKLILKEFENFLHGREIARKRYLNIMRTLSK-- 301 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----------HHHHHHHHHHHhhccccccHHHHHHHHHHHc--
Confidence 8999999999999999887643322333321 11110 011111121 111 1688889999999988
Q ss_pred CCCccCHHHHHHHHH-HhCC-cccccchhHHHHhHhHHhhhhhhccccccCCCcCeEEE-ccchhhH
Q 001897 418 EDFSIEESELVRYWL-AEGL-IDEQENHEDSFNRGISLIENLKDHCLLEDGASEGTVKI-HDVVRDV 481 (998)
Q Consensus 418 ~~~~i~~~~li~~w~-a~g~-i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~m-Hdlv~d~ 481 (998)
+. +...+....- ..|. +. ......+++.|.+..++...+ +.|++ |+++++.
T Consensus 302 -g~--~~~~l~~~~~~~~g~~~~--------~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 -CG--KWSDVKRALELEEGIEIS--------DSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp -CB--CHHHHHHHHHHHHCSCCC--------HHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHH
T ss_pred -CC--CHHHHHHHHHHhcCCCCC--------HHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHh
Confidence 22 3344432211 1121 11 122445788899999987542 46765 5666654
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=6.2e-13 Score=147.80 Aligned_cols=169 Identities=25% Similarity=0.291 Sum_probs=93.5
Q ss_pred EeecCCCccccchhhhcccceEEEeecCCccccCCCCC--CCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 496 LVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCKV--HCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 496 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~--~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
+...+..+..+|. .....++.|++++|.+..++...+ .+++|+.|++++| .+..++...|..+++|++|+|++|.+
T Consensus 23 l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 23 LSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcC
Confidence 3344444555443 234455666666666665554433 4566666666665 44555554456666666666666666
Q ss_pred CCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChhh----hcCcCCcEEeCCCCccccccc
Q 001897 574 HSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRGM----ENLSNLRRLNLSRTHYLKKIQ 647 (998)
Q Consensus 574 ~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~i----~~L~~L~~L~l~~~~~l~~~p 647 (998)
..+|. .+..+++|++|+|++|......| .+..+++|++|+|++|.++.+|..+ ..+++|++|++++|. +..+|
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~ 179 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLP 179 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccC
Confidence 65544 35566666666666655444434 4666666666666666666666553 446666666666665 44555
Q ss_pred ccccCCCCC--ccEEEcccCcc
Q 001897 648 AGIICRLSS--LEILDMTLSDY 667 (998)
Q Consensus 648 ~~~l~~l~~--L~~L~l~~~~~ 667 (998)
...+..++. |+.|++.+|.+
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCE
T ss_pred HHHhhhccHhhcceEEecCCCc
Confidence 444455554 25566655544
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=2e-13 Score=152.06 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=83.9
Q ss_pred CCcceEEEecCCCCCCCCCh----hhhcCCC-CccEEEcCCCCCCCC-Chhhhcc-----cCCceEeecCCCCCCCCcc-
Q 001897 535 CPETLTLLLQGNFPLGRVPE----KFLDGFP-ALRVLNLSGTRIHSL-PLSLLQL-----HNCRALLLRDCFYLEDLPA- 602 (998)
Q Consensus 535 ~~~l~~L~l~~~~~~~~l~~----~~~~~l~-~Lr~L~l~~~~~~~l-p~~i~~l-----~~L~~L~L~~~~~~~~lp~- 602 (998)
..+++.|++++| .+...+. ..+..++ +|++|++++|.+... +..+..+ ++|++|+|++|......+.
T Consensus 21 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 344777777777 4555554 4456677 788888888877754 3455554 7788888888775544442
Q ss_pred ----ccCC-CCCCeeeecCCCCcccChh-----hhc-CcCCcEEeCCCCcccc----cccccccCCCC-CccEEEcccCc
Q 001897 603 ----LGGL-TKLQDLDLSATSIRELPRG-----MEN-LSNLRRLNLSRTHYLK----KIQAGIICRLS-SLEILDMTLSD 666 (998)
Q Consensus 603 ----i~~l-~~L~~L~l~~~~l~~lp~~-----i~~-L~~L~~L~l~~~~~l~----~~p~~~l~~l~-~L~~L~l~~~~ 666 (998)
+..+ ++|++|++++|.++..+.. +.. .++|++|++++|.... .++.. +..++ +|++|++++|.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-LAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTSC
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-HhcCCccccEeeecCCC
Confidence 4444 7788888888877755542 233 2578888888876321 22222 34444 78888888776
Q ss_pred cc
Q 001897 667 YH 668 (998)
Q Consensus 667 ~~ 668 (998)
+.
T Consensus 179 l~ 180 (362)
T 3goz_A 179 LA 180 (362)
T ss_dssp GG
T ss_pred Cc
Confidence 63
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=2.4e-12 Score=151.80 Aligned_cols=164 Identities=21% Similarity=0.376 Sum_probs=140.3
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH 574 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~ 574 (998)
.+...+..+..++.....++++.|++++|.+..++. +..+++|+.|++++| .+..++. +..+++|+.|+|++|.+.
T Consensus 47 ~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~ 122 (605)
T 1m9s_A 47 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSS--LKDLKKLKSLSLEHNGIS 122 (605)
T ss_dssp CCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTT--STTCTTCCEEECTTSCCC
T ss_pred EEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChh--hccCCCCCEEEecCCCCC
Confidence 344455556666666678899999999999988876 778999999999999 6666663 689999999999999999
Q ss_pred CCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCC
Q 001897 575 SLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRL 654 (998)
Q Consensus 575 ~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l 654 (998)
.+| .+..|++|+.|+|++|.. ..++.++.+++|+.|+|++|.+..++. +..+++|++|+|++|. +..+|. +..+
T Consensus 123 ~l~-~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~--l~~l 196 (605)
T 1m9s_A 123 DIN-GLVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA--LAGL 196 (605)
T ss_dssp CCG-GGGGCTTCSEEECCSSCC-CCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG--GTTC
T ss_pred CCc-cccCCCccCEEECCCCcc-CCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChH--HccC
Confidence 874 689999999999999874 445889999999999999999998877 9999999999999997 666754 8999
Q ss_pred CCccEEEcccCccc
Q 001897 655 SSLEILDMTLSDYH 668 (998)
Q Consensus 655 ~~L~~L~l~~~~~~ 668 (998)
++|+.|++++|.+.
T Consensus 197 ~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 197 KNLDVLELFSQECL 210 (605)
T ss_dssp TTCSEEECCSEEEE
T ss_pred CCCCEEEccCCcCc
Confidence 99999999999874
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=3.8e-12 Score=130.35 Aligned_cols=146 Identities=22% Similarity=0.337 Sum_probs=124.5
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccCC-CCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPD-CKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
.+...+.++..+|. ...+.+++|++++|.+..++. .+..+++|+.|++++| .+..++...|.++++|++|+|++|.+
T Consensus 15 ~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 34556666777765 345789999999999998876 4566899999999999 66677666679999999999999999
Q ss_pred CCCChh-hhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCcc
Q 001897 574 HSLPLS-LLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHY 642 (998)
Q Consensus 574 ~~lp~~-i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 642 (998)
..+|.. +..+++|++|+|++|......| .+..+++|++|++++|.++.+|.. +..+++|++|++++|..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999876 6889999999999998766666 699999999999999999988865 88899999999999873
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=4.7e-12 Score=129.65 Aligned_cols=146 Identities=19% Similarity=0.268 Sum_probs=124.4
Q ss_pred EEeecCCCccccchhhhcccceEEEeecCCccccCC-C-CCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCC
Q 001897 495 SLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPD-C-KVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTR 572 (998)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~-~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~ 572 (998)
.+...+..+..+|. .....+++|++++|.+..++. . +..+++|+.|++++| .+..++...|.++++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc
Confidence 34555666666664 445678999999999998743 3 567999999999999 6777887778999999999999999
Q ss_pred CCCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCccc-ChhhhcCcCCcEEeCCCCcc
Q 001897 573 IHSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIREL-PRGMENLSNLRRLNLSRTHY 642 (998)
Q Consensus 573 ~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~ 642 (998)
+..+|. .+..+++|++|+|++|......| .+..+++|++|++++|.++.+ |..+..+++|++|++++|..
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 998876 48899999999999998776666 699999999999999999988 67799999999999999974
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=3.1e-12 Score=148.93 Aligned_cols=185 Identities=17% Similarity=0.180 Sum_probs=143.4
Q ss_pred cEEeecCCCccccchhhhcccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCC
Q 001897 494 KSLVRSGAGLTEVSETELVNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRI 573 (998)
Q Consensus 494 ~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 573 (998)
..+...+..+..+|.. ..++++.|++++|.+..+| ..+++|+.|++++| .+..+|. + .. +|++|++++|.+
T Consensus 62 ~~L~Ls~n~L~~lp~~-l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l-~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 62 SELQLNRLNLSSLPDN-LPPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-L-PA--SLKHLDVDNNQL 132 (571)
T ss_dssp SEEECCSSCCSCCCSC-CCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-C-CT--TCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCHh-HcCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-h-hc--CCCEEECCCCcC
Confidence 3455555566665542 3478999999999999888 34789999999999 6666887 3 43 899999999999
Q ss_pred CCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCC
Q 001897 574 HSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICR 653 (998)
Q Consensus 574 ~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~ 653 (998)
+.+|. .+++|++|++++|... .+|. .+++|++|++++|.++.+|. +. ++|++|++++|. +..+|. +..
T Consensus 133 ~~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~ 200 (571)
T 3cvr_A 133 TMLPE---LPALLEYINADNNQLT-MLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV 200 (571)
T ss_dssp SCCCC---CCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC-
T ss_pred CCCCC---cCccccEEeCCCCccC-cCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH
Confidence 99988 6899999999998754 4666 67899999999999999998 65 899999999997 678887 443
Q ss_pred CCCc-------cEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCCCCCCchhHh
Q 001897 654 LSSL-------EILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGTEDLTWI 712 (998)
Q Consensus 654 l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 712 (998)
+| +.|++++|.+.. ....+..+++|+.|+++.|.+....+..+..+
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~-----------lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITH-----------IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ---------CCEEEECCSSCCCC-----------CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred --hhhcccccceEEecCCCccee-----------cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 66 999999998741 23456778999999998888776555444444
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=7.8e-12 Score=128.98 Aligned_cols=144 Identities=24% Similarity=0.366 Sum_probs=124.0
Q ss_pred EeecCCCccccchhhhcccceEEEeecCCcccc-CCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCC
Q 001897 496 LVRSGAGLTEVSETELVNSLKRVSFMNNSITKL-PDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIH 574 (998)
Q Consensus 496 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l-~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~ 574 (998)
+...+..+..+|. ....++++|++++|.+..+ |..+..+++|+.|++++| .+..++...|..+++|++|+|++|.++
T Consensus 24 v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 24 VDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp EECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred eEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCC
Confidence 4455666666665 4458899999999999977 455667999999999999 678888888899999999999999999
Q ss_pred CCChh-hhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCcc
Q 001897 575 SLPLS-LLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHY 642 (998)
Q Consensus 575 ~lp~~-i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 642 (998)
.+|.. +..+++|++|+|++|... .+| .+..+++|++|++++|.++.+|.. +..+++|++|++++|..
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 98875 689999999999998755 666 799999999999999999998864 88899999999999874
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=4e-12 Score=124.27 Aligned_cols=131 Identities=22% Similarity=0.168 Sum_probs=78.3
Q ss_pred ccceEEEeecCCcc--ccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCC-CChhhhcccCCceE
Q 001897 513 NSLKRVSFMNNSIT--KLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHS-LPLSLLQLHNCRAL 589 (998)
Q Consensus 513 ~~l~~l~l~~~~~~--~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~l~~L~~L 589 (998)
+++++|++++|.+. .+|..+..+++|+.|++++| .+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 46777777777766 66665555666666666666 34444 234666666666666666665 55555556666666
Q ss_pred eecCCCCCCCC--ccccCCCCCCeeeecCCCCcccCh----hhhcCcCCcEEeCCCCccccccc
Q 001897 590 LLRDCFYLEDL--PALGGLTKLQDLDLSATSIRELPR----GMENLSNLRRLNLSRTHYLKKIQ 647 (998)
Q Consensus 590 ~L~~~~~~~~l--p~i~~l~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~~p 647 (998)
++++|...... +.+..+++|++|++++|.+..+|. .+..+++|++|++++|. ...+|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 66666433321 245666666666666666665554 45556666666666654 33343
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.4e-11 Score=123.18 Aligned_cols=124 Identities=20% Similarity=0.250 Sum_probs=99.9
Q ss_pred EEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCC
Q 001897 540 TLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATS 618 (998)
Q Consensus 540 ~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~ 618 (998)
+++++++ .+..+|..+ .+.|++|++++|.+..+|..+..+++|++|+|++|......+ .+..+++|++|++++|.
T Consensus 14 ~l~~~~~-~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNK-GLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTS-CCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCC-CCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4555555 566677654 357888999999998888888899999999999887665555 58899999999999999
Q ss_pred CcccCh-hhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 619 IRELPR-GMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 619 l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
++.+|. .+..+++|++|++++|. +..+|.+.+..+++|+.|++.+|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 988775 48889999999999987 67788776888999999999888763
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=4.3e-12 Score=124.07 Aligned_cols=105 Identities=30% Similarity=0.318 Sum_probs=49.0
Q ss_pred CCccEEEcCCCCCC--CCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcc-cChhhhcCcCCcEEeC
Q 001897 561 PALRVLNLSGTRIH--SLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRE-LPRGMENLSNLRRLNL 637 (998)
Q Consensus 561 ~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l 637 (998)
++|++|++++|.+. .+|..+..+++|++|++++|... .++.+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-ChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 34455555555544 44444445555555555554422 22444445555555555555443 4444444555555555
Q ss_pred CCCcccccccc-cccCCCCCccEEEcccCcc
Q 001897 638 SRTHYLKKIQA-GIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 638 ~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~ 667 (998)
++|. +..+|. ..++.+++|+.|++++|.+
T Consensus 103 s~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 103 SGNK-LKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp BSSS-CCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred cCCc-cCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 5544 333321 1244455555555555443
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=5e-12 Score=120.79 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=6.0
Q ss_pred cceEEEeecCCcc
Q 001897 514 SLKRVSFMNNSIT 526 (998)
Q Consensus 514 ~l~~l~l~~~~~~ 526 (998)
+++++++++|.+.
T Consensus 18 ~l~~L~l~~n~l~ 30 (149)
T 2je0_A 18 DVKELVLDNSRSN 30 (149)
T ss_dssp GCSEEECTTCBCB
T ss_pred cCeEEEccCCcCC
Confidence 4444444444443
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=5.3e-12 Score=152.86 Aligned_cols=154 Identities=14% Similarity=0.195 Sum_probs=98.8
Q ss_pred ccceEEEeecCCccccCCCCCCCCcceEEEecCCC----CCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCce
Q 001897 513 NSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNF----PLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRA 588 (998)
Q Consensus 513 ~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~----~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 588 (998)
..++++++..+.+...+........|+.+.+.... .+. ++...|..++.|++|+|++|.+..+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 45777888777777666655555555544433211 222 4556678899999999999999999999999999999
Q ss_pred EeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcc
Q 001897 589 LLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 589 L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
|+|++|... .+| .+++|++|++|+|++|.|+.+|..+++|++|++|+|++|. +..+|.+ +++|++|+.|++++|.+
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCcc
Confidence 999998765 666 6999999999999999999999999999999999999997 6788887 89999999999999988
Q ss_pred ccc
Q 001897 668 HWR 670 (998)
Q Consensus 668 ~~~ 670 (998)
...
T Consensus 329 ~~~ 331 (727)
T 4b8c_D 329 EKQ 331 (727)
T ss_dssp CSH
T ss_pred CCC
Confidence 643
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.8e-11 Score=122.31 Aligned_cols=125 Identities=22% Similarity=0.304 Sum_probs=90.2
Q ss_pred eEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChh--hhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeec
Q 001897 539 LTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLS--LLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLS 615 (998)
Q Consensus 539 ~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~--i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~ 615 (998)
++++++++ .+..+|..++ ..|++|++++|.+..++.. ++.+++|++|+|++|......| .+..+++|++|+++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 35556555 4566665442 3778888888888777653 7788888888888877666556 58888888888888
Q ss_pred CCCCcccChh-hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCccc
Q 001897 616 ATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 616 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
+|.++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8888876654 7778888888888887 44444444788888888888887764
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=1.3e-11 Score=117.81 Aligned_cols=126 Identities=23% Similarity=0.322 Sum_probs=108.0
Q ss_pred CCcceEEEecCCCCC-CCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCee
Q 001897 535 CPETLTLLLQGNFPL-GRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDL 612 (998)
Q Consensus 535 ~~~l~~L~l~~~~~~-~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L 612 (998)
.++++.|++++|... ..+|. .+..+++|++|++++|.+..+ ..++.+++|++|++++|.....+| .++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 478899999999433 26775 458899999999999999988 788999999999999998776677 46779999999
Q ss_pred eecCCCCcccC--hhhhcCcCCcEEeCCCCcccccccc---cccCCCCCccEEEcc
Q 001897 613 DLSATSIRELP--RGMENLSNLRRLNLSRTHYLKKIQA---GIICRLSSLEILDMT 663 (998)
Q Consensus 613 ~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~---~~l~~l~~L~~L~l~ 663 (998)
++++|.++.+| ..++.+++|++|++++|. +..+|. ..++.+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 99999999876 789999999999999997 666665 458899999999875
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=6.8e-14 Score=163.98 Aligned_cols=179 Identities=22% Similarity=0.255 Sum_probs=105.3
Q ss_pred cccceEEEeecCCccccCCCCCCCCcceEEEecCCCC------------CCCCChhhhcCCCCccEEE-cCCCCCCCCCh
Q 001897 512 VNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFP------------LGRVPEKFLDGFPALRVLN-LSGTRIHSLPL 578 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~------------~~~l~~~~~~~l~~Lr~L~-l~~~~~~~lp~ 578 (998)
.+.+++|++++|.+..+|..+..|++|+.|++.+|.. ....++..++.+++|+.|+ ++.+.+..++.
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 3467788888888888888888888888888755520 1222233345555666665 44443332221
Q ss_pred ------hhhc--ccCCceEeecCCCCCCCCccccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccc
Q 001897 579 ------SLLQ--LHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGI 650 (998)
Q Consensus 579 ------~i~~--l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~ 650 (998)
.+.. ...|++|+|++|.. +.+|.++.+++|++|++++|.++.+|..++.|++|++|++++|. +..+| .
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~- 503 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G- 503 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCC-SSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-
T ss_pred hhhhcccccccCccCceEEEecCCCC-CCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-
Confidence 1111 12466666666643 33555666666666666666666666666666666666666665 44555 3
Q ss_pred cCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeecCCC
Q 001897 651 ICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLENIPS 703 (998)
Q Consensus 651 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 703 (998)
++++++|+.|++++|.+.... .+..++.+++|+.|+++.|.+..
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~---------~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSA---------AIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSS---------TTGGGGGCTTCCEEECTTSGGGG
T ss_pred cCCCCCCcEEECCCCCCCCCC---------CcHHHhcCCCCCEEEecCCcCCC
Confidence 666666666666666553211 02455666666666666555543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.5e-11 Score=121.19 Aligned_cols=128 Identities=18% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCcc-ccCCCCCCeee
Q 001897 535 CPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLPA-LGGLTKLQDLD 613 (998)
Q Consensus 535 ~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-i~~l~~L~~L~ 613 (998)
+.+++.|++++| .+..++. +....++|++|++++|.+..+ ..+..+++|++|++++|......+. +..+++|++|+
T Consensus 18 ~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 444455555544 3333332 222222555555555555544 3455555555555555543322222 25555555555
Q ss_pred ecCCCCcccCh--hhhcCcCCcEEeCCCCccccccccc---ccCCCCCccEEEcccCc
Q 001897 614 LSATSIRELPR--GMENLSNLRRLNLSRTHYLKKIQAG---IICRLSSLEILDMTLSD 666 (998)
Q Consensus 614 l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~---~l~~l~~L~~L~l~~~~ 666 (998)
+++|.+..+|. .+..+++|++|++++|. +..+|.. .++.+++|+.|+++.|.
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 55555555554 45555555555555554 3344432 24555555555555443
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=3.6e-12 Score=154.35 Aligned_cols=146 Identities=21% Similarity=0.202 Sum_probs=102.0
Q ss_pred EeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCC
Q 001897 519 SFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLE 598 (998)
Q Consensus 519 ~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~ 598 (998)
.+..|.+...+..+..++.|+.|++++| .+..+|..++ .+++|++|+|++|.+..+|..|++|++|++|+|++|...
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTS-CCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccceecChhhhccCCCCcEEECCCC-CCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-
Confidence 3344444445556667888999999888 5668887775 788999999999999999988999999999999998755
Q ss_pred CCc-cccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCC-ccEEEcccCccc
Q 001897 599 DLP-ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSS-LEILDMTLSDYH 668 (998)
Q Consensus 599 ~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~-L~~L~l~~~~~~ 668 (998)
.+| .+++|++|++|+|++|.++.+|..+++|++|++|+|++|.....+|.. +..+.. +..|++.+|.+.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCC
T ss_pred ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCccc
Confidence 666 688999999999999999999988999999999999998844444433 433221 123556666553
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=6.1e-11 Score=118.51 Aligned_cols=125 Identities=25% Similarity=0.362 Sum_probs=108.1
Q ss_pred eEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCCh-hhhcCCCCccEEEcCCCCCCCC-ChhhhcccCCceEeecC
Q 001897 516 KRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPE-KFLDGFPALRVLNLSGTRIHSL-PLSLLQLHNCRALLLRD 593 (998)
Q Consensus 516 ~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~-~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~ 593 (998)
+.++++++.+..+|..+. .+++.|++++| .+..++. .+|..+++|++|++++|.+..+ |..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 678899999999998664 38999999999 5666665 4578999999999999999977 67899999999999999
Q ss_pred CCCCCCCc-cccCCCCCCeeeecCCCCccc-ChhhhcCcCCcEEeCCCCccc
Q 001897 594 CFYLEDLP-ALGGLTKLQDLDLSATSIREL-PRGMENLSNLRRLNLSRTHYL 643 (998)
Q Consensus 594 ~~~~~~lp-~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l 643 (998)
|......| .+..+++|++|++++|.++.+ |..+..+++|++|++++|...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 98766666 499999999999999999966 677999999999999999843
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=9.8e-11 Score=116.94 Aligned_cols=123 Identities=27% Similarity=0.385 Sum_probs=107.4
Q ss_pred eEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCC
Q 001897 516 KRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDC 594 (998)
Q Consensus 516 ~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~ 594 (998)
+.++++++.+..+|..+. ++++.|++++| .+..+|. .|..+++|++|++++|.++.++. .|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 467888888988987654 68999999998 6778884 56899999999999999998875 6899999999999999
Q ss_pred CCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCcc
Q 001897 595 FYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHY 642 (998)
Q Consensus 595 ~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 642 (998)
......| .+..+++|++|++++|.++.+|.. +..+++|++|++++|..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 8666666 599999999999999999999875 78899999999999873
No 136
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.20 E-value=1.8e-11 Score=108.89 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=63.2
Q ss_pred cccchhhhhhhhcchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001897 16 GHVLCGPFCSKINNTVKIQSNLQALEKELEVLIGLRDDMICQLALAEKDG-KVPRTQVKAWVRSVDEFIFEVDLMQESVR 94 (998)
Q Consensus 16 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~Wl~~~~~~~~d~~d~~d~~~ 94 (998)
++++.+.+.+++..+.+++++++.|+++|+.|++++.+++. .. ...+++++.|+++||+++||+||++|+|.
T Consensus 7 l~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~-------~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 7 IPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGE-------VPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH-------hccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555667788999999999999999999999988874 11 23688999999999999999999999998
Q ss_pred Hhhc
Q 001897 95 AKEK 98 (998)
Q Consensus 95 ~~~~ 98 (998)
++..
T Consensus 80 ~~~~ 83 (115)
T 3qfl_A 80 VQVD 83 (115)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7653
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.5e-10 Score=114.13 Aligned_cols=107 Identities=27% Similarity=0.398 Sum_probs=66.0
Q ss_pred CCccEEEcCCCCCCCCChh-hhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeC
Q 001897 561 PALRVLNLSGTRIHSLPLS-LLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNL 637 (998)
Q Consensus 561 ~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 637 (998)
++|++|++++|.+..+|.. +..+++|++|++++|......+ .+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4566666666666655543 4566666666666655433333 256666677777766666666554 456677777777
Q ss_pred CCCcccccccccccCCCCCccEEEcccCccc
Q 001897 638 SRTHYLKKIQAGIICRLSSLEILDMTLSDYH 668 (998)
Q Consensus 638 ~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 668 (998)
++|. +..+|...+..+++|++|++++|.+.
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 7665 55666654566777777777776653
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=2.4e-10 Score=112.60 Aligned_cols=126 Identities=23% Similarity=0.358 Sum_probs=99.3
Q ss_pred ceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChh-hhcccCCceEeecC
Q 001897 515 LKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLS-LLQLHNCRALLLRD 593 (998)
Q Consensus 515 l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~ 593 (998)
.+.+++.++.+..+|..+. ++++.|++++| .+..++...|..+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3567788888888876543 68888888888 56677777778888899999998888888764 57888899999988
Q ss_pred CCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCccc
Q 001897 594 CFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYL 643 (998)
Q Consensus 594 ~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l 643 (998)
|......+ .+..+++|++|++++|.++.+|.. +..+++|++|++++|...
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 87555444 378888899999998888888876 467888999998888743
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=5.3e-11 Score=117.16 Aligned_cols=126 Identities=13% Similarity=0.168 Sum_probs=108.1
Q ss_pred cccceEEEeecCCccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhh-hcccCCceEe
Q 001897 512 VNSLKRVSFMNNSITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSL-LQLHNCRALL 590 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i-~~l~~L~~L~ 590 (998)
..+++++++++|.+..+|......++|+.|++++| .+..++ .+..+++|++|++++|.+..+|..+ ..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 45789999999999988653333559999999999 566663 3689999999999999999998765 8999999999
Q ss_pred ecCCCCCCCCc---cccCCCCCCeeeecCCCCcccChh----hhcCcCCcEEeCCCCc
Q 001897 591 LRDCFYLEDLP---ALGGLTKLQDLDLSATSIRELPRG----MENLSNLRRLNLSRTH 641 (998)
Q Consensus 591 L~~~~~~~~lp---~i~~l~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~ 641 (998)
+++|.. +.+| .+..+++|++|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999875 4555 588999999999999999999986 8999999999999886
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1.8e-10 Score=134.93 Aligned_cols=119 Identities=22% Similarity=0.229 Sum_probs=81.4
Q ss_pred ceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCccccCCCCCCeeeecCC
Q 001897 538 TLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLPALGGLTKLQDLDLSAT 617 (998)
Q Consensus 538 l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~~L~~L~l~~~ 617 (998)
|+.|++++| .+..+|. +..+++|++|++++|.+..+|..++.+++|++|+|++|... .+|.++++++|++|++++|
T Consensus 443 L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSS
T ss_pred ceEEEecCC-CCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCcccCCCCCCcEEECCCC
Confidence 555666666 4555664 46777777777777777777777777777777777776544 3667777777777777777
Q ss_pred CCccc--ChhhhcCcCCcEEeCCCCccccccccc---ccCCCCCccEEE
Q 001897 618 SIREL--PRGMENLSNLRRLNLSRTHYLKKIQAG---IICRLSSLEILD 661 (998)
Q Consensus 618 ~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~---~l~~l~~L~~L~ 661 (998)
.++.+ |..++.|++|+.|++++|. +..+|+. ++..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 77766 6777777777777777776 4444432 123356666664
No 141
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.11 E-value=1.9e-09 Score=121.05 Aligned_cols=290 Identities=16% Similarity=0.109 Sum_probs=169.9
Q ss_pred cccchHHHHHHHHHhhc----CCCceEEEEEeCCCChHHHHHHHHHHHhhhcccc-CCCCeEEEEEeCCCCCHHHHHHHH
Q 001897 156 HQTTASKTLGKLMKLLD----CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSA-HRSGMVIWATVSKELNLRWVQAQI 230 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i 230 (998)
.+.|++++++++..++. ....+.+.|+|++|+||||+|+.+++........ +.-...+|+++....+...+...+
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 99 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAI 99 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHH
Confidence 34567788888887773 3456789999999999999999999876431100 001246788888888999999999
Q ss_pred HHHhcCCcch-hhhHHHHHHHHHHHHH-cCCeEEEEEccccccccc----cccc---CCCCCC--CCCcEEEEecCChH-
Q 001897 231 AERLNLDVKM-EESMQRLGIRLHERLL-RESNFLLILDDVWETIDL----DSLG---VPQPED--HGGSKIILTSRSLE- 298 (998)
Q Consensus 231 ~~~l~~~~~~-~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~~~----~~l~---~~l~~~--~~gs~iivTtR~~~- 298 (998)
+.+++..... ..+.......+...+. .+++.+||||+++..... +.+. ...... ..+..+|.||+...
T Consensus 100 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~ 179 (387)
T 2v1u_A 100 AEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF 179 (387)
T ss_dssp HHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch
Confidence 9998764322 1123444455555553 335899999999865321 1121 111111 34567788887652
Q ss_pred -------HHhhcCCCeEEEccCCChHHHHHHHHHhhCC-CCCCCCchHHHHHHHHHcc---CChHHH-HHHHHHhc----
Q 001897 299 -------VCMAMKTDVEVRVDLLNDDEAWQLFSQNAGV-AASKDPIKPFAQAIARECK---GLPLAI-ITMGTAMR---- 362 (998)
Q Consensus 299 -------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~c~---glPlai-~~~~~~l~---- 362 (998)
+...+ ....+.+.+++.++..+++.+.+.. .....--.+..+.+++.++ |.|-.+ ..+..+..
T Consensus 180 ~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 180 VENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAER 258 (387)
T ss_dssp SSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 22222 1257899999999999999988632 0111112345678888888 999433 33222211
Q ss_pred -C--CCCHHHHHHHHHHHhhcCCCcccchhhhHHHHHhcccccchhhHHHHhhhc-cCCCCCccCHHHHHHHHH----Hh
Q 001897 363 -G--KTNVKLWKHALKEWQKSVPCIKGIENNVYNSLKWSYDALEGNSKYCFLYCS-LFPEDFSIEESELVRYWL----AE 434 (998)
Q Consensus 363 -~--~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~a-~fp~~~~i~~~~li~~w~----a~ 434 (998)
+ .-+.+.+..+++... ...+.-++..|+.+.+..+..++ ++-....+...++.+... ..
T Consensus 259 ~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (387)
T 2v1u_A 259 RREERVRREHVYSARAEIE-------------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL 325 (387)
T ss_dssp TTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 1 123455555554331 12345567788888877776666 443222344443333221 22
Q ss_pred CCcccccchhHHHHhHhHHhhhhhhcccccc
Q 001897 435 GLIDEQENHEDSFNRGISLIENLKDHCLLED 465 (998)
Q Consensus 435 g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 465 (998)
| +.+. .......+++.|...++++.
T Consensus 326 ~-~~~~-----~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 326 G-LEHV-----TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp T-CCCC-----CHHHHHHHHHHHHHTTSEEE
T ss_pred C-CCCC-----CHHHHHHHHHHHHhCCCeEE
Confidence 3 1111 12334567888888888874
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.09 E-value=1.7e-09 Score=121.53 Aligned_cols=245 Identities=17% Similarity=0.145 Sum_probs=149.1
Q ss_pred cccchHHHHHHHHHhhc----CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 001897 156 HQTTASKTLGKLMKLLD----CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIA 231 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 231 (998)
.+.|++++++.+.+++. ....+.+.|+|++|+||||||+.+++........ -...+|+.+....+...+...++
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG--KFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS--SCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC--CceEEEEECCCCCCHHHHHHHHH
Confidence 45577788888888776 4556789999999999999999999876432100 22467888877777888888888
Q ss_pred HHhcCCcch-hhhHHHHHHHHHHHHHc-CCeEEEEEcccccccc------cccccCCCCC-CCCCcEEEEecCChHHHhh
Q 001897 232 ERLNLDVKM-EESMQRLGIRLHERLLR-ESNFLLILDDVWETID------LDSLGVPQPE-DHGGSKIILTSRSLEVCMA 302 (998)
Q Consensus 232 ~~l~~~~~~-~~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~~------~~~l~~~l~~-~~~gs~iivTtR~~~v~~~ 302 (998)
..++..... ..+.......+.+.+.. +++.+||||+++.... +..+...+.. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 877653321 11233444455555543 3489999999976421 1112111100 2335667888876543222
Q ss_pred cC-------CCeEEEccCCChHHHHHHHHHhhCC-CCCCCCchHHHHHHHHHcc---CChHHHHHHHHHh-c-----C--
Q 001897 303 MK-------TDVEVRVDLLNDDEAWQLFSQNAGV-AASKDPIKPFAQAIARECK---GLPLAIITMGTAM-R-----G-- 363 (998)
Q Consensus 303 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~c~---glPlai~~~~~~l-~-----~-- 363 (998)
+. ....+++.+++.++..+++.+.+.. .....-..+..+.+++.++ |.|..+..+.... . +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 11 1258999999999999999987631 1112223566777888888 9998543333221 1 1
Q ss_pred CCCHHHHHHHHHHHhhcCCCcccchhhhHHHHHhcccccchhhHHHHhhhcc
Q 001897 364 KTNVKLWKHALKEWQKSVPCIKGIENNVYNSLKWSYDALEGNSKYCFLYCSL 415 (998)
Q Consensus 364 ~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~a~ 415 (998)
.-+.+.+..++.... ...+.-.+..+|...+..+..++.
T Consensus 259 ~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~il~ai~~ 297 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE-------------RDRVRDIILTLPFHSKLVLMAVVS 297 (386)
T ss_dssp SCCHHHHHHHHHHHH-------------HHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHH
Confidence 123344444444321 124555667788877777766663
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.06 E-value=5.6e-09 Score=117.07 Aligned_cols=242 Identities=15% Similarity=0.063 Sum_probs=148.3
Q ss_pred ccchHHHHHHHHHhh----cCCCceEEEEEeCCCChHHHHHHHHHHHhhhccc--cCC-CCeEEEEEeCCCC-CHHHHHH
Q 001897 157 QTTASKTLGKLMKLL----DCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSS--AHR-SGMVIWATVSKEL-NLRWVQA 228 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l----~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~--~~~-f~~~~wv~~s~~~-~~~~~~~ 228 (998)
+.|++++++++..++ .....+.|.|+|++|+||||+|+.+++....... ... ....+|++++... +...+..
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 101 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLS 101 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHH
Confidence 345566666665544 3445679999999999999999999987643210 011 2356888887777 8888889
Q ss_pred HHHHHhc-CCcc-hhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc---ccc-ccCCCCCCCCCcEEEEecCChHH---
Q 001897 229 QIAERLN-LDVK-MEESMQRLGIRLHERLLRESNFLLILDDVWETID---LDS-LGVPQPEDHGGSKIILTSRSLEV--- 299 (998)
Q Consensus 229 ~i~~~l~-~~~~-~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~---~~~-l~~~l~~~~~gs~iivTtR~~~v--- 299 (998)
.++..+. .... ...+.......+.+.+... +.+|||||++.... .+. +...+... .+..||+||+....
T Consensus 102 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 102 SLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTT
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhh
Confidence 9888872 2111 1112234445555656554 44999999987532 122 11111111 57889999986522
Q ss_pred -----HhhcCCCeEEEccCCChHHHHHHHHHhhCC-CCCCCCchHHHHHHHHHcc---CChH-HHHHHHHHh--c---CC
Q 001897 300 -----CMAMKTDVEVRVDLLNDDEAWQLFSQNAGV-AASKDPIKPFAQAIARECK---GLPL-AIITMGTAM--R---GK 364 (998)
Q Consensus 300 -----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~l--~---~~ 364 (998)
...+ ...+++.+++.++..++|..++.. .....--.+..+.|++.++ |.|. |+..+-... . ..
T Consensus 180 l~~~l~sr~--~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~ 257 (384)
T 2qby_B 180 MEPRVLSSL--GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI 257 (384)
T ss_dssp SCHHHHHTC--CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred hCHHHHhcC--CCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 1222 238999999999999999988631 1111222456778888888 8887 333333222 2 12
Q ss_pred CCHHHHHHHHHHHhhcCCCcccchhhhHHHHHhcccccchhhHHHHhhhcc
Q 001897 365 TNVKLWKHALKEWQKSVPCIKGIENNVYNSLKWSYDALEGNSKYCFLYCSL 415 (998)
Q Consensus 365 ~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~a~ 415 (998)
-+.+.+..+++... ...+..++..|+++.+..+..++.
T Consensus 258 i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 258 IRKEHVDKAIVDYE-------------QERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp CCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHh-------------cchHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666655432 134556677888877777766665
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=7.7e-10 Score=108.26 Aligned_cols=101 Identities=25% Similarity=0.417 Sum_probs=64.8
Q ss_pred cEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCCc
Q 001897 564 RVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRTH 641 (998)
Q Consensus 564 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 641 (998)
+.++++++.+..+|..+. .+|++|+|++|......| .+.++++|++|+|++|+++.+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666666553 566666666665444444 466667777777777777766665 3567777777777665
Q ss_pred ccccccccccCCCCCccEEEcccCcc
Q 001897 642 YLKKIQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 642 ~l~~~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
+..+|.+.+..+++|++|++++|.+
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred -cceeCHHHhccccCCCEEEeCCCCc
Confidence 5566665566677777777776655
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=9.4e-10 Score=107.26 Aligned_cols=102 Identities=27% Similarity=0.403 Sum_probs=69.7
Q ss_pred ccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChh-hhcCcCCcEEeCCCC
Q 001897 563 LRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRG-MENLSNLRRLNLSRT 640 (998)
Q Consensus 563 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 640 (998)
.+.++++++.+..+|..+. .+|++|+|++|......| .+.++++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3566777777777766553 667777777766554445 467777777777777777777665 467777777777777
Q ss_pred cccccccccccCCCCCccEEEcccCcc
Q 001897 641 HYLKKIQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 641 ~~l~~~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
. +..+|.+.+.++++|+.|++++|.+
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 6 5666665567777777777777765
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=4.5e-12 Score=127.64 Aligned_cols=142 Identities=24% Similarity=0.250 Sum_probs=97.5
Q ss_pred CCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCCCcccChhhh
Q 001897 549 LGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATSIRELPRGME 627 (998)
Q Consensus 549 ~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~ 627 (998)
+..+|. .+..+++|++|++++|.+..+| .+..+++|++|++++|... .+| .+..+++|++|++++|.++.+| .+.
T Consensus 37 l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp CCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 444554 3477888888888888888887 8888888888888887644 556 4666788888888888888876 678
Q ss_pred cCcCCcEEeCCCCcccccccc-cccCCCCCccEEEcccCcccccccCcccccccccccccccccCceEE
Q 001897 628 NLSNLRRLNLSRTHYLKKIQA-GIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLS 695 (998)
Q Consensus 628 ~L~~L~~L~l~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 695 (998)
.+++|++|++++|. +..++. ..+..+++|++|++++|.+....+............+..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 88888888888887 555443 23778888888888888764322210000001112356667777665
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=7.2e-12 Score=126.11 Aligned_cols=143 Identities=20% Similarity=0.250 Sum_probs=114.6
Q ss_pred ceEEEeecC--CccccCCCCCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeec
Q 001897 515 LKRVSFMNN--SITKLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLR 592 (998)
Q Consensus 515 l~~l~l~~~--~~~~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 592 (998)
++...+.+. .+..+|..+..+++|+.|++++| .+..+| .+..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 344444433 44455556777899999999988 566677 4688999999999999999999988899999999999
Q ss_pred CCCCCCCCccccCCCCCCeeeecCCCCcccCh--hhhcCcCCcEEeCCCCcccccccc---------cccCCCCCccEEE
Q 001897 593 DCFYLEDLPALGGLTKLQDLDLSATSIRELPR--GMENLSNLRRLNLSRTHYLKKIQA---------GIICRLSSLEILD 661 (998)
Q Consensus 593 ~~~~~~~lp~i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~---------~~l~~l~~L~~L~ 661 (998)
+|.. +.+|.+..+++|++|++++|.++.+|. .+..+++|++|++++|......|. ..+..+++|+.|+
T Consensus 102 ~N~l-~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 102 YNQI-ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEC-CCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCcC-CcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9864 457788899999999999999998775 688999999999999974333332 2478899999997
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.96 E-value=4.6e-08 Score=109.79 Aligned_cols=286 Identities=17% Similarity=0.150 Sum_probs=166.3
Q ss_pred ccchHHHHHHHHHhhcC----CCce--EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 001897 157 QTTASKTLGKLMKLLDC----DEIR--RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQI 230 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~----~~~~--vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 230 (998)
..+++++++++..++.. .... .+.|+|++|+||||+|+.+++...... -..++++.++...+...+...+
T Consensus 19 l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT----TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC----CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc----CeeEEEEeCccCCCHHHHHHHH
Confidence 44566677776666643 3334 899999999999999999998764220 1246788888888889999999
Q ss_pred HHHhcCCcch-hhhHHHHHHHHHHHHH-cCCeEEEEEccccccc--ccccccCCCCC-CC---CCcEEEEecCChHHHhh
Q 001897 231 AERLNLDVKM-EESMQRLGIRLHERLL-RESNFLLILDDVWETI--DLDSLGVPQPE-DH---GGSKIILTSRSLEVCMA 302 (998)
Q Consensus 231 ~~~l~~~~~~-~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~--~~~~l~~~l~~-~~---~gs~iivTtR~~~v~~~ 302 (998)
+..++..... ..+.......+...+. .+++.+||||+++... ....+...+.. .. .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9988754321 1123344444444443 2348899999997751 22222222211 11 36678888876544332
Q ss_pred cC-------CCeEEEccCCChHHHHHHHHHhhCC-CCCCCCchHHHHHHHHHc---------cCChHHHHHHHHHhc---
Q 001897 303 MK-------TDVEVRVDLLNDDEAWQLFSQNAGV-AASKDPIKPFAQAIAREC---------KGLPLAIITMGTAMR--- 362 (998)
Q Consensus 303 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~c---------~glPlai~~~~~~l~--- 362 (998)
.. ....+.+.+++.++..+++...+.. .....--.+..+.|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 21 1247999999999999999887632 111122346778899999 788755444333211
Q ss_pred ---CC--CCHHHHHHHHHHHhhcCCCcccchhhhHHHHHhcccccchhhHHHHhhhccCC---CCCccCHHHHHHHHHH-
Q 001897 363 ---GK--TNVKLWKHALKEWQKSVPCIKGIENNVYNSLKWSYDALEGNSKYCFLYCSLFP---EDFSIEESELVRYWLA- 433 (998)
Q Consensus 363 ---~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~a~fp---~~~~i~~~~li~~w~a- 433 (998)
+. -+.+....+.... . ...+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~---~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEV---L----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHH---S----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHHH---h----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 11 1122222222211 1 11223345677888887777776543 2214555555554332
Q ss_pred ---hCCcccccchhHHHHhHhHHhhhhhhcccccc
Q 001897 434 ---EGLIDEQENHEDSFNRGISLIENLKDHCLLED 465 (998)
Q Consensus 434 ---~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 465 (998)
.|.. ... ......++++|....++..
T Consensus 322 ~~~~~~~-~~~-----~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 322 CEEYGER-PRV-----HSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHTTCC-CCC-----HHHHHHHHHHHHHTTSSEE
T ss_pred HHHcCCC-CCC-----HHHHHHHHHHHHhCCCeEE
Confidence 2311 110 1234456888888888874
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=2.8e-09 Score=104.24 Aligned_cols=99 Identities=25% Similarity=0.324 Sum_probs=67.4
Q ss_pred eEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC-ChhhhcccCCceEeecCCCCCCCCcc-ccCCCCCCeeeecC
Q 001897 539 LTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL-PLSLLQLHNCRALLLRDCFYLEDLPA-LGGLTKLQDLDLSA 616 (998)
Q Consensus 539 ~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~-i~~l~~L~~L~l~~ 616 (998)
..++++++ .+..+|..+ .++|++|++++|.+..+ |..+.++++|++|+|++|......+. +.++++|++|+|++
T Consensus 15 ~~l~~~~n-~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34555555 455666544 25677777777777766 44667777777777777754443333 57777788888887
Q ss_pred CCCcccChh-hhcCcCCcEEeCCCCc
Q 001897 617 TSIRELPRG-MENLSNLRRLNLSRTH 641 (998)
Q Consensus 617 ~~l~~lp~~-i~~L~~L~~L~l~~~~ 641 (998)
|.++.+|.. +..+++|++|++++|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 777777765 7777888888887776
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.93 E-value=1.2e-08 Score=106.28 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=111.7
Q ss_pred cccccchHHHHHHHHHhhcCCC-ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDE-IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 232 (998)
+....++++.++.+..++.... .+.+.|+|++|+||||+|+.+++........... .+.. ... ...+..
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~------~~~~---~~~-~~~~~~ 91 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT------PCGV---CDN-CREIEQ 91 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS------CCSC---SHH-HHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC------CCcc---cHH-HHHHhc
Confidence 3345567778888887776543 3589999999999999999999876432110000 0000 000 000100
Q ss_pred HhcC-----CcchhhhHHHHHHHHHHHH----HcCCeEEEEEcccccc--cccccccCCCCCCCCCcEEEEecCChHH-H
Q 001897 233 RLNL-----DVKMEESMQRLGIRLHERL----LRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKIILTSRSLEV-C 300 (998)
Q Consensus 233 ~l~~-----~~~~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-~ 300 (998)
.... ........ .....+.+.+ ..+++.+||+||++.. ..++.+...+.....+..+|+||+.... .
T Consensus 92 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKV-EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TCCSSEEEEETTCGGGH-HHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred cCCcceEEecCcccccH-HHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0000 00000011 1111122211 1234799999999764 2334443333233457788888876432 1
Q ss_pred h-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHh
Q 001897 301 M-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAM 361 (998)
Q Consensus 301 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 361 (998)
. .......+++.+++.++..+++.+.+..... .--.+..+.|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1223468999999999999999988743221 1224567899999999999987766543
No 151
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.92 E-value=1.6e-08 Score=103.65 Aligned_cols=185 Identities=14% Similarity=0.052 Sum_probs=113.0
Q ss_pred cccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAER 233 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 233 (998)
+....|+++.++.+.+++.....+.+.|+|++|+|||++|+.+++.+.... .-...+.+..+...+...+...+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN---WRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG---GGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc---cccceEEeccccccChHHHHHHHHHH
Confidence 344556777888888888776666699999999999999999998753221 11123445554444433322222111
Q ss_pred hcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCChHH-Hh-hcCCCeEE
Q 001897 234 LNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRSLEV-CM-AMKTDVEV 309 (998)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~v-~~-~~~~~~~~ 309 (998)
.... .....++.+||+||++... ..+.+...+.....+.++|+||+.... .. .......+
T Consensus 93 ~~~~----------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 93 ARTA----------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp HTSC----------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hccc----------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 1100 0112458999999998752 223332222223456788888876432 11 11223488
Q ss_pred EccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHH
Q 001897 310 RVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMG 358 (998)
Q Consensus 310 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 358 (998)
++.+++.++..+++.+.+...... --.+..+.|++.++|.|..+..+.
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999998877321111 224567789999999998654443
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=2.6e-09 Score=116.89 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=47.5
Q ss_pred CcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccCc-eEEEEeecCCCCCCC
Q 001897 629 LSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLL-VLSIRLENIPSQGTE 707 (998)
Q Consensus 629 L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~ 707 (998)
+++|+.|++++|. +..+|...+.++++|+.|++..+ +. .+ .-..+.++++|+ .+.+.. .+......
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~-~I---------~~~aF~~~~~L~~~l~l~~-~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LK-TI---------GQRVFSNCGRLAGTLELPA-SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CC-EE---------CTTTTTTCTTCCEEEEECT-TCCEECTT
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cc-ee---------hHHHhhCChhccEEEEEcc-cceEEchh
Confidence 4556666665554 55555555556666666665544 11 01 112344555555 555533 33333444
Q ss_pred chhHhcccceeEEeecCC----CCCCCCCccccEEE
Q 001897 708 DLTWIGRLRSFQFFIGPT----ANSLPTKHDERRVT 739 (998)
Q Consensus 708 ~l~~l~~L~~L~l~~~~~----~~~~~~~~~L~~L~ 739 (998)
.+..+.+|+.+.+..+.+ ...+..+.+|+.++
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 455555666655533322 12344455555543
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=6.3e-09 Score=101.38 Aligned_cols=99 Identities=26% Similarity=0.342 Sum_probs=68.6
Q ss_pred eEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCC-ChhhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecC
Q 001897 539 LTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSL-PLSLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSA 616 (998)
Q Consensus 539 ~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~ 616 (998)
+++++++| .+..+|..+ .+.|++|++++|.+..+ |..+..+++|++|+|++|......+ .+..+++|++|+|++
T Consensus 12 ~~l~~s~n-~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGK-SLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCC-CcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35555555 455566544 35677777777777766 4457777777777777776544444 367788888888888
Q ss_pred CCCcccChh-hhcCcCCcEEeCCCCc
Q 001897 617 TSIRELPRG-MENLSNLRRLNLSRTH 641 (998)
Q Consensus 617 ~~l~~lp~~-i~~L~~L~~L~l~~~~ 641 (998)
|.++.+|.. +..+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 888877764 7778888888888776
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=9.1e-08 Score=106.85 Aligned_cols=116 Identities=11% Similarity=0.207 Sum_probs=57.9
Q ss_pred cceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCCCCCc--cccCCCCCCeee
Q 001897 537 ETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP--ALGGLTKLQDLD 613 (998)
Q Consensus 537 ~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp--~i~~l~~L~~L~ 613 (998)
+|+.+.+..+ +..++...|.++ .|+.+.+.. .+..++. .|.+|.+|+.+++.+|. +..+| .+. ..+|+.+.
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT-TCCCSEEE
T ss_pred CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEe-ecccCEEE
Confidence 4555555443 444555555553 455565554 4444432 45555666666665543 23333 233 35566666
Q ss_pred ecCCCCcccChh-hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEc
Q 001897 614 LSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDM 662 (998)
Q Consensus 614 l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l 662 (998)
+.. .++.++.. +.++.+|+.+.+..+ +..++...+.+ ++|+.+.+
T Consensus 210 lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 210 LPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp CCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE
T ss_pred eCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe
Confidence 553 24444433 445556666665542 44455444444 55555555
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.75 E-value=8e-08 Score=104.75 Aligned_cols=269 Identities=14% Similarity=0.077 Sum_probs=133.4
Q ss_pred cccchHHHHHHHHHhhc-----CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 001897 156 HQTTASKTLGKLMKLLD-----CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQI 230 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 230 (998)
++.|.+..+..+..++. ......|.|+|++|+|||++|+.+++.... ..+++.++......++..
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~--------~~~~~~~~~~~~~~~l~~-- 82 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV--------NLRVTSGPAIEKPGDLAA-- 82 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC--------CEEEECTTTCCSHHHHHH--
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEeccccCChHHHHH--
Confidence 34455555555554443 234467899999999999999999886421 134555443332222211
Q ss_pred HHHhcCCcchhhhHHHHHHHHHHHHHc--CCeEEEEEccccccc--ccccccCCCC--------C----------CCCCc
Q 001897 231 AERLNLDVKMEESMQRLGIRLHERLLR--ESNFLLILDDVWETI--DLDSLGVPQP--------E----------DHGGS 288 (998)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~l~~--~~r~LlVlDdv~~~~--~~~~l~~~l~--------~----------~~~gs 288 (998)
.+.. .+..+|+||+++... ....+...+. . ..++.
T Consensus 83 -----------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 83 -----------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -----------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -----------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 1111 235688888887642 1111100000 0 01235
Q ss_pred EEEEecCChH-HHhhc--CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHhcCC-
Q 001897 289 KIILTSRSLE-VCMAM--KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAMRGK- 364 (998)
Q Consensus 289 ~iivTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~- 364 (998)
++|.||.... +.... .....+.+.+++.++..+++.+.+..... .--.+....+++.++|.|-.+..+...+...
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 5666665432 21111 11357899999999999999888743222 2234667899999999998887665544211
Q ss_pred -------CCHHHHHHHHHHHhhcCCCcccchhhhHHHHHhcccccchhhHHHHhhhccCCCCCccCHHHHH----HHHHH
Q 001897 365 -------TNVKLWKHALKEWQKSVPCIKGIENNVYNSLKWSYDALEGNSKYCFLYCSLFPEDFSIEESELV----RYWLA 433 (998)
Q Consensus 365 -------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li----~~w~a 433 (998)
-+.+....+...+..........+..+...+.-.|..=+.....+-..++ +++..+. ++-+.
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lg-------i~~~tl~~~l~~~~i~ 291 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALS-------EDPGTLEEVHEPYLIR 291 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTT-------SCHHHHHHHTHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhC-------CCHHHHHHHHhHHHHH
Confidence 12333444333321111001111111222222222111111222222222 2333332 23556
Q ss_pred hCCcccccchhHHHHhHhHHhh-hhhhcccccc
Q 001897 434 EGLIDEQENHEDSFNRGISLIE-NLKDHCLLED 465 (998)
Q Consensus 434 ~g~i~~~~~~~~~~~~~~~~~~-~L~~~~l~~~ 465 (998)
.|++..........+.+..++. ++.+|+++|+
T Consensus 292 ~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 292 QGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp TTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 7888655444445566778887 8888888873
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=3e-08 Score=108.28 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=38.0
Q ss_pred cccceEEEeecCCcc--ccCCCCCCCCcceEEEecCCCCCCCCChhhhcC--------CCCccEEEcCCCCCCCCCh-hh
Q 001897 512 VNSLKRVSFMNNSIT--KLPDCKVHCPETLTLLLQGNFPLGRVPEKFLDG--------FPALRVLNLSGTRIHSLPL-SL 580 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~--~l~~~~~~~~~l~~L~l~~~~~~~~l~~~~~~~--------l~~Lr~L~l~~~~~~~lp~-~i 580 (998)
..+++.|++++|.+. ..+... .+.+..+.+..+ .+|...|.+ +.+|+.|++.+ .++.++. .|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~--~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT--YPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS--SGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcccc--cccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 457888999888877 222111 111222222222 344444555 55555555555 4554443 34
Q ss_pred hcccCCceEeecCCC
Q 001897 581 LQLHNCRALLLRDCF 595 (998)
Q Consensus 581 ~~l~~L~~L~L~~~~ 595 (998)
..|++|+.|++.+|.
T Consensus 121 ~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 121 KGCDNLKICQIRKKT 135 (329)
T ss_dssp TTCTTCCEEEBCCSS
T ss_pred hcCcccceEEcCCCC
Confidence 555555555555543
No 157
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=1.5e-07 Score=102.46 Aligned_cols=186 Identities=16% Similarity=0.126 Sum_probs=110.9
Q ss_pred cccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAER 233 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 233 (998)
+....|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++.+.... .....+++..+...+...+. ++++.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~i~-~~~~~ 95 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS---YADGVLELNASDDRGIDVVR-NQIKH 95 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG---HHHHEEEECTTSCCSHHHHH-THHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc---ccCCEEEecCccccChHHHH-HHHHH
Confidence 344556777888888888777666699999999999999999998763211 01123445444433322221 11111
Q ss_pred hcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCChHH-Hh-hcCCCeEE
Q 001897 234 LNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRSLEV-CM-AMKTDVEV 309 (998)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~v-~~-~~~~~~~~ 309 (998)
+.... ..+..+++.++|+||++... ..+.+...+.....++++|+||+...- .. .......+
T Consensus 96 ~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 96 FAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp HHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 10000 00002348899999998752 233333222223356778888865321 11 12234589
Q ss_pred EccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHH-HHHHH
Q 001897 310 RVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLA-IITMG 358 (998)
Q Consensus 310 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla-i~~~~ 358 (998)
++.+++.++..+++.+.+..... .--.+....|++.++|.|.. +..+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDV-KYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999887632111 11245678899999999954 44443
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=6.5e-08 Score=106.66 Aligned_cols=98 Identities=22% Similarity=0.232 Sum_probs=50.4
Q ss_pred EcCCC-CCCCCChhhhcccCCceEeecC-CCCCCCCc-cccCCCCCCeeeecCCCCcccCh-hhhcCcCCcEEeCCCCcc
Q 001897 567 NLSGT-RIHSLPLSLLQLHNCRALLLRD-CFYLEDLP-ALGGLTKLQDLDLSATSIRELPR-GMENLSNLRRLNLSRTHY 642 (998)
Q Consensus 567 ~l~~~-~~~~lp~~i~~l~~L~~L~L~~-~~~~~~lp-~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 642 (998)
+++++ .+..+|. +..+.+|++|+|++ |......+ .++.|.+|++|+|++|.|+.+|. .+.+|++|++|+|++|.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~- 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA- 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-
Confidence 44444 4555555 55555555555554 33222222 35555555555555555555443 34555555666655554
Q ss_pred cccccccccCCCCCccEEEcccCcc
Q 001897 643 LKKIQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 643 l~~~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
+..+|...+..++ |+.|++.+|.+
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCc
Confidence 4455554333333 56666555544
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.62 E-value=1.5e-06 Score=97.08 Aligned_cols=165 Identities=15% Similarity=0.220 Sum_probs=114.7
Q ss_pred CCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCCCCCc--cccCCCCCCe
Q 001897 535 CPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP--ALGGLTKLQD 611 (998)
Q Consensus 535 ~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp--~i~~l~~L~~ 611 (998)
+..+..+.+.+ .+..++...|.++ +|+.+.+..+ ++.++. .|.+ .+|+.+.+.+ .++.++ .+.+|.+|+.
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCe
Confidence 45555565554 3667777788875 7999999876 777765 4555 4799999986 355555 5999999999
Q ss_pred eeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcccccccCcccccccccccccccccC
Q 001897 612 LDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERL 691 (998)
Q Consensus 612 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 691 (998)
+++.+|+++.+|.......+|+.+.+..+ +..++...+.++++|+.+++..+-- .+. -..+.+ .+|
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~--~I~---------~~aF~~-~~L 250 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVS--TIG---------QEAFRE-SGI 250 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCC--EEC---------TTTTTT-CCC
T ss_pred eecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCcc--Ccc---------cccccc-CCc
Confidence 99999999999988666799999999854 7788888899999999999876421 111 122333 567
Q ss_pred ceEEEEeecCCCCCCCchhHhcccceeEEe
Q 001897 692 LVLSIRLENIPSQGTEDLTWIGRLRSFQFF 721 (998)
Q Consensus 692 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 721 (998)
+.+.+. +.+.......+..+.+|+.+.+.
T Consensus 251 ~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 251 TTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp SEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred cEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 777773 23333333444445555555443
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.7e-07 Score=103.28 Aligned_cols=98 Identities=22% Similarity=0.182 Sum_probs=58.5
Q ss_pred EecCCCCCCCCChhhhcCCCCccEEEcCC-CCCCCCCh-hhhcccCCceEeecCCCCCCCCc-cccCCCCCCeeeecCCC
Q 001897 542 LLQGNFPLGRVPEKFLDGFPALRVLNLSG-TRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP-ALGGLTKLQDLDLSATS 618 (998)
Q Consensus 542 ~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~-~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~i~~l~~L~~L~l~~~~ 618 (998)
+++++..+..+|. +..+.+|++|+|++ |.+..+|. .|+.|++|++|+|++|......| .+.+|++|++|+|++|.
T Consensus 14 ~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 3443324555565 45666666666664 66666653 46666666666666665444444 46666667777777776
Q ss_pred CcccChhhhcCcCCcEEeCCCCc
Q 001897 619 IRELPRGMENLSNLRRLNLSRTH 641 (998)
Q Consensus 619 l~~lp~~i~~L~~L~~L~l~~~~ 641 (998)
++.+|..+....+|+.|++.+|.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 66666554433336777766665
No 161
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.3e-06 Score=92.73 Aligned_cols=167 Identities=10% Similarity=0.035 Sum_probs=99.8
Q ss_pred chHHHHHHHHHhh----cCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCC--CeEEEEEeCCCCCHHHHHHHHHH
Q 001897 159 TASKTLGKLMKLL----DCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRS--GMVIWATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 159 ~~~~~~~~l~~~l----~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~ 232 (998)
+|+++++++...+ ..+....+.|+|++|+|||++|+.|++.+......... -..+.+++....+...+...|++
T Consensus 24 ~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~ 103 (318)
T 3te6_A 24 SQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWF 103 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHH
Confidence 4666776666544 45677899999999999999999999987543211111 13567888888889999999999
Q ss_pred HhcCCcchhhhHHHHHHHHHHHH--HcCCeEEEEEcccccccccccccCCC--C--CCCCCcEEEEecCCh-----HH--
Q 001897 233 RLNLDVKMEESMQRLGIRLHERL--LRESNFLLILDDVWETIDLDSLGVPQ--P--EDHGGSKIILTSRSL-----EV-- 299 (998)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l--~~~~r~LlVlDdv~~~~~~~~l~~~l--~--~~~~gs~iivTtR~~-----~v-- 299 (998)
++................+.... ..+++++++||+++....-+.+...+ + ..++.+ ||.++... .+
T Consensus 104 ~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~-vI~i~n~~d~~~~~L~~ 182 (318)
T 3te6_A 104 AISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLS-IICVGGHNVTIREQINI 182 (318)
T ss_dssp HHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEE-EEEECCSSCCCHHHHHT
T ss_pred HhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEE-EEEEecCcccchhhcch
Confidence 99643211111112222232322 23458999999998764211111111 1 112222 33334322 11
Q ss_pred --HhhcCCCeEEEccCCChHHHHHHHHHhh
Q 001897 300 --CMAMKTDVEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 300 --~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (998)
...+. ...+.+.+.+.+|-.+++.+++
T Consensus 183 ~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 183 MPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 12222 2578999999999999998887
No 162
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=7e-07 Score=97.37 Aligned_cols=185 Identities=15% Similarity=0.074 Sum_probs=109.0
Q ss_pred ccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001897 155 EHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERL 234 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 234 (998)
....|.++.++.+..++..+..+.+.|+|++|+||||+|+.+++.+..... -...+.+..+...+...+...+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~---- 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW---RHNFLELNASDERGINVIREKV---- 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH---HHHEEEEETTCHHHHHTTHHHH----
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc---cCceEEeeccccCchHHHHHHH----
Confidence 344566777788888887777667999999999999999999987532210 0113334433211111110000
Q ss_pred cCCcchhhhHHHHHHHHHH--HHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCChHH-Hhh-cCCCeE
Q 001897 235 NLDVKMEESMQRLGIRLHE--RLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRSLEV-CMA-MKTDVE 308 (998)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~--~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~-~~~~~~ 308 (998)
..... .+..+++.++|+||++... ..+.+...+.....++++|+||....- ... ......
T Consensus 98 --------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 98 --------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp --------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred --------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 00000 0111357899999998652 233333222223346788888875421 111 112247
Q ss_pred EEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHHHHh
Q 001897 309 VRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMGTAM 361 (998)
Q Consensus 309 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 361 (998)
+++.+++.++..+++.+.+...... --.+....|++.++|.|..+..+....
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 8999999999999998877432211 124567789999999998765544433
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=1.3e-08 Score=112.53 Aligned_cols=154 Identities=18% Similarity=0.131 Sum_probs=74.1
Q ss_pred cccceEEEeecCCccc-----cCCCCC-CCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCC-----hhh
Q 001897 512 VNSLKRVSFMNNSITK-----LPDCKV-HCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLP-----LSL 580 (998)
Q Consensus 512 ~~~l~~l~l~~~~~~~-----l~~~~~-~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp-----~~i 580 (998)
.+.++.+++++|.+.. +...+. .+.+|+.|++++|.....-...+...+++|+.|+|++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4567788888777652 111121 12466666666662211111122233445666666666654221 111
Q ss_pred -hcccCCceEeecCCCCCCC----Cc-cccCCCCCCeeeecCCCCc-----ccChhhhcCcCCcEEeCCCCccccc----
Q 001897 581 -LQLHNCRALLLRDCFYLED----LP-ALGGLTKLQDLDLSATSIR-----ELPRGMENLSNLRRLNLSRTHYLKK---- 645 (998)
Q Consensus 581 -~~l~~L~~L~L~~~~~~~~----lp-~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~---- 645 (998)
...++|++|+|++|..... ++ .+..+++|++|+|++|.+. .++..+...++|++|++++|. +..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHH
Confidence 1245566666666543211 11 2345556666666666554 223444555556666666654 221
Q ss_pred -ccccccCCCCCccEEEcccCcc
Q 001897 646 -IQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 646 -~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
+... +...++|++|++++|.+
T Consensus 230 ~l~~~-L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 230 ALARA-AREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHH-HHHCSSCCEEECTTSSC
T ss_pred HHHHH-HHhCCCCCEEeccCCCC
Confidence 1111 33445566666655554
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.39 E-value=6e-06 Score=92.45 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=30.9
Q ss_pred CCCccceeecCCCccccccccC-CCCCCCccEEEEecCCCCCCCCCCCcccCCcceE
Q 001897 897 VVPNLRNLELKNLPKLRTICRQ-KESWQCLEQVKVIKCNLLRELPLTAQNADTVKEI 952 (998)
Q Consensus 897 ~~p~L~~L~l~~~~~L~~i~~~-~~~l~~L~~L~i~~C~~L~~lP~~~~~l~~L~~l 952 (998)
.+.+|+.+.+.. +++.+... +..|++|+.+++.. .++.+...+.++++|+.+
T Consensus 341 ~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 341 GCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred CCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 345677776643 25555432 55677777777754 345555566667777665
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.35 E-value=4.9e-08 Score=107.90 Aligned_cols=163 Identities=20% Similarity=0.181 Sum_probs=106.8
Q ss_pred CCcceEEEecCCCCCCCCChhh----h-cCCCCccEEEcCCCCCCC--CChhhhcccCCceEeecCCCCCCCCc-cc---
Q 001897 535 CPETLTLLLQGNFPLGRVPEKF----L-DGFPALRVLNLSGTRIHS--LPLSLLQLHNCRALLLRDCFYLEDLP-AL--- 603 (998)
Q Consensus 535 ~~~l~~L~l~~~~~~~~l~~~~----~-~~l~~Lr~L~l~~~~~~~--lp~~i~~l~~L~~L~L~~~~~~~~lp-~i--- 603 (998)
.+.++.|++++|. +....... + ...++|++|+|++|.+.. +..-...+.+|++|+|++|....... .+
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 3567788888883 33222111 1 233689999999998763 22223456788999999886433222 22
Q ss_pred --cCCCCCCeeeecCCCCcc-----cChhhhcCcCCcEEeCCCCccccc-----ccccccCCCCCccEEEcccCcccccc
Q 001897 604 --GGLTKLQDLDLSATSIRE-----LPRGMENLSNLRRLNLSRTHYLKK-----IQAGIICRLSSLEILDMTLSDYHWRV 671 (998)
Q Consensus 604 --~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----~p~~~l~~l~~L~~L~l~~~~~~~~~ 671 (998)
...++|++|+|++|.++. ++..+..+++|++|++++|. +.. ++.. +...++|++|++++|.+...
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~- 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDT- 226 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHH-
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHH-
Confidence 356789999999998863 55566788889999999987 432 2222 66778899999998877421
Q ss_pred cCcccccccccccccccccCceEEEEeecCCCCCC
Q 001897 672 KGQEDEGQTNFEELGCLERLLVLSIRLENIPSQGT 706 (998)
Q Consensus 672 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 706 (998)
........+...++|+.|+++.|.+.....
T Consensus 227 -----g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 227 -----AALALARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp -----HHHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred -----HHHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 011223446667889999998887765433
No 166
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.30 E-value=6.2e-06 Score=89.42 Aligned_cols=182 Identities=13% Similarity=0.040 Sum_probs=108.8
Q ss_pred ccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001897 155 EHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERL 234 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 234 (998)
....|.+..++.+.+++..+..+.+.++|++|+||||+|+.+++.+..... -...+.++.+.......+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~------- 86 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW---RDNFIEMNASDERGIDVVR------- 86 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH---HHHCEEEETTSTTCTTTSS-------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc---cCCeEEEeCccccChHHHH-------
Confidence 345566777888888887776666999999999999999999887532110 0112334444322111110
Q ss_pred cCCcchhhhHHHHHHHHHHH--HHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCChH-HHh-hcCCCeE
Q 001897 235 NLDVKMEESMQRLGIRLHER--LLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRSLE-VCM-AMKTDVE 308 (998)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~--l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~~~~~~~ 308 (998)
......... +..+++.++|+|+++... ..+.+...+.....+.++|+||.... +.. .......
T Consensus 87 -----------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 87 -----------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp -----------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred -----------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence 000011000 112347899999997652 23444444433345677888776543 111 1123358
Q ss_pred EEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHH
Q 001897 309 VRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMG 358 (998)
Q Consensus 309 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 358 (998)
+++.+++.++..+++.+.+...... --.+....+++.++|.+..+....
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999998877432221 224567788899999887654433
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.24 E-value=3e-06 Score=84.12 Aligned_cols=154 Identities=14% Similarity=0.152 Sum_probs=83.3
Q ss_pred ccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccC--CCCeEEEEEeCCCCCHHHHHHHHHH
Q 001897 155 EHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAH--RSGMVIWATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~--~f~~~~wv~~s~~~~~~~~~~~i~~ 232 (998)
....|+++.++++.+.+.....+.+.|+|++|+|||++|+.+++.+....... .....+++.++ .+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----- 90 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG------ALV----- 90 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH------HHH-----
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH------HHh-----
Confidence 34456778888999888877777889999999999999999998764321111 11234444331 111
Q ss_pred HhcCCcchhhhHHHHHHHHHHHH-HcCCeEEEEEccccccc---------ccccccCCCCCCCCCcEEEEecCChHHHh-
Q 001897 233 RLNLDVKMEESMQRLGIRLHERL-LRESNFLLILDDVWETI---------DLDSLGVPQPEDHGGSKIILTSRSLEVCM- 301 (998)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l-~~~~r~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtR~~~v~~- 301 (998)
.. .............+.+.+ ..+++.+|||||++... ++..+...+.. ..+..+|.||.......
T Consensus 91 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~ 166 (195)
T 1jbk_A 91 --AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQY 166 (195)
T ss_dssp --TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHHH
T ss_pred --cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHHH
Confidence 00 000111112222222222 23457899999997652 11111111111 12345666666544221
Q ss_pred ------hcCCCeEEEccCCChHHHHHHH
Q 001897 302 ------AMKTDVEVRVDLLNDDEAWQLF 323 (998)
Q Consensus 302 ------~~~~~~~~~l~~L~~~~~~~lf 323 (998)
....-..+.+.+++.++..+++
T Consensus 167 ~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 167 IEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 1112236888999888776543
No 168
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.21 E-value=1.6e-05 Score=84.49 Aligned_cols=176 Identities=14% Similarity=0.167 Sum_probs=95.3
Q ss_pred cccccchHHHHHHHHHhhcC-------------CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC
Q 001897 154 IEHQTTASKTLGKLMKLLDC-------------DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE 220 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~ 220 (998)
+....|.++.++++.+.+.. ...+.+.|+|++|+|||++|+.+++.... ..+.+..+.-
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~--------~~~~v~~~~~ 87 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA--------TFIRVVGSEL 87 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC--------EEEEEEGGGG
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEehHHH
Confidence 34444555555555554421 34567999999999999999999886421 1233333221
Q ss_pred CCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc----------------ccccccCCCC--
Q 001897 221 LNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI----------------DLDSLGVPQP-- 282 (998)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~----------------~~~~l~~~l~-- 282 (998)
.+ .. . .........+..........+|+||+++... .+..+...+.
T Consensus 88 ~~--------------~~-~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 88 VK--------------KF-I-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp CC--------------CS-T-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred HH--------------hc-c-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 10 00 0 0111222233333334447899999996531 0111111110
Q ss_pred CCCCCcEEEEecCChHHH-----hhcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCC-hHHHH
Q 001897 283 EDHGGSKIILTSRSLEVC-----MAMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGL-PLAII 355 (998)
Q Consensus 283 ~~~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~ 355 (998)
....+..||.||...... ....-...+.+...+.++..++|...+......... ....+++.+.|. |-.+.
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~--~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV--NLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHHCTTCCHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC--CHHHHHHHcCCCCHHHHH
Confidence 122356788888754321 111223478999999999999998887543222211 145677777773 43443
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.15 E-value=2.4e-06 Score=88.48 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=98.1
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch
Q 001897 161 SKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM 240 (998)
Q Consensus 161 ~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 240 (998)
...++.+..+......+.+.|+|++|+||||+|+.+++..... ...++|+.++...+. + .
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-----~~~~~~~~~~~~~~~----------~----~- 96 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-----ERRSFYIPLGIHASI----------S----T- 96 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEGGGGGGS----------C----G-
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEEHHHHHHH----------H----H-
Confidence 3455566666555567889999999999999999999876432 234567766432110 0 0
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEEEcccccccc----cccccCCCCC-CCCC-cEEEEecCC---------hHHHhhcCC
Q 001897 241 EESMQRLGIRLHERLLRESNFLLILDDVWETID----LDSLGVPQPE-DHGG-SKIILTSRS---------LEVCMAMKT 305 (998)
Q Consensus 241 ~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~----~~~l~~~l~~-~~~g-s~iivTtR~---------~~v~~~~~~ 305 (998)
. ..+.+ . +..+||+||++.... .+.+...+.. ...+ .++|+||+. ..+...+..
T Consensus 97 -~--------~~~~~-~-~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~ 165 (242)
T 3bos_A 97 -A--------LLEGL-E-QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHW 165 (242)
T ss_dssp -G--------GGTTG-G-GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHH
T ss_pred -H--------HHHhc-c-CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhc
Confidence 0 00011 2 256899999976521 1112111100 0112 247777763 222223333
Q ss_pred CeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 306 DVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 306 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
...+++.+++.++..+++...+..... .--.+....+++.++|.+-.+..+
T Consensus 166 ~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 166 GLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp SEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHH
Confidence 478999999999999999887742211 223466778899999987666443
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.14 E-value=0.00015 Score=76.32 Aligned_cols=177 Identities=12% Similarity=0.095 Sum_probs=93.5
Q ss_pred CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Q 001897 173 CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLH 252 (998)
Q Consensus 173 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 252 (998)
....+.+.|+|++|+|||++|+.+++... .. .+.+..+... .+. ... ........+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~-------~~-~~~i~~~~~~------------~g~--~~~-~~~~~~~~~~ 117 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN-------FP-FIKICSPDKM------------IGF--SET-AKCQAMKKIF 117 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT-------CS-EEEEECGGGC------------TTC--CHH-HHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC-------CC-EEEEeCHHHh------------cCC--chH-HHHHHHHHHH
Confidence 45667899999999999999999988632 11 2223332210 110 000 1111112222
Q ss_pred HHHHcCCeEEEEEccccccc------------ccccc---cCCCCCCCCCcEEEEecCChHHHhh---cC-CCeEEEccC
Q 001897 253 ERLLRESNFLLILDDVWETI------------DLDSL---GVPQPEDHGGSKIILTSRSLEVCMA---MK-TDVEVRVDL 313 (998)
Q Consensus 253 ~~l~~~~r~LlVlDdv~~~~------------~~~~l---~~~l~~~~~gs~iivTtR~~~v~~~---~~-~~~~~~l~~ 313 (998)
......+..+|+||+++... ....+ ............||.||........ .+ -...+++.+
T Consensus 118 ~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~ 197 (272)
T 1d2n_A 118 DDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPN 197 (272)
T ss_dssp HHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCC
T ss_pred HHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCC
Confidence 22333458899999986531 01111 1111112234456777877654332 11 246788999
Q ss_pred CCh-HHHHHHHHHhhCCCCCCCCchHHHHHHHHHccC------ChHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 001897 314 LND-DEAWQLFSQNAGVAASKDPIKPFAQAIARECKG------LPLAIITMGTAMRGKTNVKLWKHALKEWQK 379 (998)
Q Consensus 314 L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g------lPlai~~~~~~l~~~~~~~~w~~~~~~l~~ 379 (998)
++. ++-..++.+.. . -..+....|++.+.| ++-++..+-... .......+..+++.+..
T Consensus 198 l~~r~~i~~i~~~~~-~-----~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~-~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 198 IATGEQLLEALELLG-N-----FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL-QMDPEYRVRKFLALLRE 263 (272)
T ss_dssp EEEHHHHHHHHHHHT-C-----SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT-TSCGGGHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcC-C-----CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHh-hhchHHHHHHHHHHHHH
Confidence 988 66666665532 1 124557788888877 444444433332 23334556666665543
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.14 E-value=1.6e-05 Score=88.37 Aligned_cols=184 Identities=14% Similarity=0.090 Sum_probs=103.0
Q ss_pred cccchHHHHHHHHHhhcCCC-ceEEEEEeCCCChHHHHHHHHHHHhhhccccC---C-------------CCeEEEEEeC
Q 001897 156 HQTTASKTLGKLMKLLDCDE-IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAH---R-------------SGMVIWATVS 218 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~---~-------------f~~~~wv~~s 218 (998)
...|+++.++.+..++...+ ...+.|+|++|+||||+|+.+++......... . +...+.+..+
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA 96 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETT
T ss_pred hccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEeccc
Confidence 34566677777777776554 35789999999999999999988764221000 0 0001111111
Q ss_pred CCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCC
Q 001897 219 KELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRS 296 (998)
Q Consensus 219 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~ 296 (998)
... ...........+...-..+++.++|+||++... ..+.+...+.....+..+|++|..
T Consensus 97 ~~~------------------~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 97 SRT------------------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp CSC------------------CSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred ccC------------------CHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 100 001111111111100012347899999997642 233332222222345667777654
Q ss_pred hH-HH-hhcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHH
Q 001897 297 LE-VC-MAMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMG 358 (998)
Q Consensus 297 ~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 358 (998)
.. +. ........+++.+++.++..+++.+.+..... .--.+....|++.++|.|..+..+.
T Consensus 159 ~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 159 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 32 11 11223468999999999999999877632111 1124557789999999998876554
No 172
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.13 E-value=8.6e-05 Score=82.94 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=47.1
Q ss_pred ccccCCCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccccCCCccEEEeecCcccccccc
Q 001897 779 SVGAFASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKYLLT 858 (998)
Q Consensus 779 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 858 (998)
.+..+.+|+.+.+..+ ...... .....+.+|+.+.|.++ ++.+....- ..+.+|+.+.+.. +++.+..
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~----~aF~~c~~L~~i~lp~~--v~~I~~~aF---~~c~~L~~i~lp~--~l~~I~~ 359 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGE----EAFESCTSLVSIDLPYL--VEEIGKRSF---RGCTSLSNINFPL--SLRKIGA 359 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECT----TTTTTCTTCCEECCCTT--CCEECTTTT---TTCTTCCEECCCT--TCCEECT
T ss_pred cccccccccccccccc-cceech----hhhcCCCCCCEEEeCCc--ccEEhHHhc---cCCCCCCEEEECc--cccEehH
Confidence 3456778888888654 222211 33445678888887543 444433211 1356677777643 3555543
Q ss_pred hhHHHhhCCCCCEEEEec
Q 001897 859 YGSFILALPNLQEIKVSF 876 (998)
Q Consensus 859 ~~~~~~~l~~L~~L~l~~ 876 (998)
. .+..+++|+.+++..
T Consensus 360 ~--aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 360 N--AFQGCINLKKVELPK 375 (394)
T ss_dssp T--TBTTCTTCCEEEEEG
T ss_pred H--HhhCCCCCCEEEECC
Confidence 2 355677888887753
No 173
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.10 E-value=4.8e-05 Score=79.68 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=92.4
Q ss_pred cccccchHHHHHHHHHhhcC---------CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHH
Q 001897 154 IEHQTTASKTLGKLMKLLDC---------DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLR 224 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 224 (998)
+.|.....+.+.+++.++.. ...+.|.|+|++|+|||++|+.+++.... ..+.+.++.-.+.
T Consensus 8 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~--------~~~~~~~~~~~~~- 78 (262)
T 2qz4_A 8 VAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV--------PFLAMAGAEFVEV- 78 (262)
T ss_dssp SCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC--------CEEEEETTTTSSS-
T ss_pred hCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEEechHHHHhh-
Confidence 34444444555555555432 23456889999999999999999986531 1344554432110
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc-------------c----cccccCCCC--CCC
Q 001897 225 WVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI-------------D----LDSLGVPQP--EDH 285 (998)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~-------------~----~~~l~~~l~--~~~ 285 (998)
. .... ......+.+........+|+||+++... . +..+...+. ...
T Consensus 79 ---------~-----~~~~-~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 ---------I-----GGLG-AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp ---------S-----TTHH-HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred ---------c-----cChh-HHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0 0011 1111222333333447899999997641 0 011111111 112
Q ss_pred CCcEEEEecCChHHH-hh-c---CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChH
Q 001897 286 GGSKIILTSRSLEVC-MA-M---KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPL 352 (998)
Q Consensus 286 ~gs~iivTtR~~~v~-~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 352 (998)
.+..||.||...... .. . .-...+.+...+.++-.+++...+...............+++.+.|.+-
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH
Confidence 355677777654321 11 1 1236788999999999999988774322222222234677888877654
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.00 E-value=8.5e-05 Score=83.52 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=98.4
Q ss_pred cccccchHHHH---HHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 001897 154 IEHQTTASKTL---GKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQI 230 (998)
Q Consensus 154 ~~~~~~~~~~~---~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 230 (998)
+....|.+..+ ..+...+.......+.|+|++|+||||+|+.+++..... | +.+... .....++.. +
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-----f---~~l~a~-~~~~~~ir~-~ 94 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-----V---ERISAV-TSGVKEIRE-A 94 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-----E---EEEETT-TCCHHHHHH-H
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-----e---EEEEec-cCCHHHHHH-H
Confidence 33344444444 456666666777889999999999999999999864211 1 122221 122222211 1
Q ss_pred HHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEE-ecCChH--H-HhhcC
Q 001897 231 AERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIIL-TSRSLE--V-CMAMK 304 (998)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-TtR~~~--v-~~~~~ 304 (998)
...........++.+|+||+++... ..+.+...+.. + ...+|. ||.+.. + .....
T Consensus 95 -----------------~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 95 -----------------IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp -----------------HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHT
T ss_pred -----------------HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhC
Confidence 1111111223458899999997652 23333322222 2 233443 554432 1 11222
Q ss_pred CCeEEEccCCChHHHHHHHHHhhCCCC------CCCCchHHHHHHHHHccCChHHHHHHH
Q 001897 305 TDVEVRVDLLNDDEAWQLFSQNAGVAA------SKDPIKPFAQAIARECKGLPLAIITMG 358 (998)
Q Consensus 305 ~~~~~~l~~L~~~~~~~lf~~~~~~~~------~~~~~~~~~~~i~~~c~glPlai~~~~ 358 (998)
....+.+.+++.++...++.+.+.... ...--.+..+.|++.++|.+-.+..+.
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 345788999999999999988874311 111234567788888999876654433
No 175
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=3.1e-05 Score=85.20 Aligned_cols=193 Identities=16% Similarity=0.115 Sum_probs=105.2
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001897 156 HQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (998)
...|.++.++.+..++.......+.|+|++|+||||+|+.+++.+..... ..+ ..+.+..+.......+...+.....
T Consensus 38 ~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDL-MKS-RILELNASDERGISIVREKVKNFAR 115 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHH-HTT-SEEEECSSSCCCHHHHTTHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcc-ccc-ceEEEccccccchHHHHHHHHHHhh
Confidence 34455566777888887765555899999999999999999887542100 011 2344444443333332222111100
Q ss_pred CCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCChH-HHhh-cCCCeEEEc
Q 001897 236 LDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRSLE-VCMA-MKTDVEVRV 311 (998)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l 311 (998)
......... ........++-++++|+++... ....+...+.......++|++|.... +... ......+++
T Consensus 116 ~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~ 189 (353)
T 1sxj_D 116 LTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRF 189 (353)
T ss_dssp SCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEEC
T ss_pred hcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEe
Confidence 000000000 0000112235799999987652 12222222212223566777665332 2111 111247899
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 312 DLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 312 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
.+++.++....+.+.+..... .--++..+.|++.++|.|-.+..+
T Consensus 190 ~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 190 KALDASNAIDRLRFISEQENV-KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999887743221 122467789999999998865443
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.96 E-value=3e-05 Score=87.47 Aligned_cols=171 Identities=13% Similarity=0.176 Sum_probs=98.9
Q ss_pred HHHHHhhcCCC-ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhh
Q 001897 165 GKLMKLLDCDE-IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEES 243 (998)
Q Consensus 165 ~~l~~~l~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 243 (998)
..+........ ...+.|+|++|+||||||+.+++....... . ..++++++. .+..++...+... .
T Consensus 118 ~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~--~-~~v~~v~~~------~~~~~~~~~~~~~-----~ 183 (440)
T 2z4s_A 118 HAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEP--D-LRVMYITSE------KFLNDLVDSMKEG-----K 183 (440)
T ss_dssp HHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCC--S-SCEEEEEHH------HHHHHHHHHHHTT-----C
T ss_pred HHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCC--C-CeEEEeeHH------HHHHHHHHHHHcc-----c
Confidence 33444433333 678999999999999999999987643211 1 124555443 3344444443211 1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEcccccccc----cccccCCCCC-CCCCcEEEEecCC---------hHHHhhcCCCeEE
Q 001897 244 MQRLGIRLHERLLRESNFLLILDDVWETID----LDSLGVPQPE-DHGGSKIILTSRS---------LEVCMAMKTDVEV 309 (998)
Q Consensus 244 ~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~ 309 (998)
. ..+...+. .+.-+|+|||++.... .+.+...+.. ...|..||+||.. ..+...+..+..+
T Consensus 184 ~----~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i 258 (440)
T 2z4s_A 184 L----NEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVA 258 (440)
T ss_dssp H----HHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCC
T ss_pred H----HHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEE
Confidence 1 11222232 1367999999976532 1122111110 1346778888875 2334445455678
Q ss_pred EccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHH
Q 001897 310 RVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAII 355 (998)
Q Consensus 310 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 355 (998)
.+.+++.++..+++.+.+..... .--.+....|++.+.|.+-.+.
T Consensus 259 ~l~~p~~e~r~~iL~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 259 KLEPPDEETRKSIARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp BCCCCCHHHHHHHHHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHH
Confidence 99999999999999888732111 1112356788888888876543
No 177
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.95 E-value=0.00029 Score=77.11 Aligned_cols=159 Identities=9% Similarity=0.027 Sum_probs=86.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+.|.|+|++|+|||++|+.+++.... ..+.+.++.-... . .. ........+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~--------~~~~i~~~~l~~~--------------~-~g-~~~~~~~~~~~~ 171 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGA--------TFFSISASSLTSK--------------W-VG-EGEKMVRALFAV 171 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTC--------EEEEEEGGGGCCS--------------S-TT-HHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC--------eEEEEehHHhhcc--------------c-cc-hHHHHHHHHHHH
Confidence 4568999999999999999999886421 2344555432110 0 00 111122223333
Q ss_pred HHcCCeEEEEEcccccccc-------------cccccCCC----CCCCCCcEEEEecCChH-HHh--hcCCCeEEEccCC
Q 001897 255 LLRESNFLLILDDVWETID-------------LDSLGVPQ----PEDHGGSKIILTSRSLE-VCM--AMKTDVEVRVDLL 314 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~-------------~~~l~~~l----~~~~~gs~iivTtR~~~-v~~--~~~~~~~~~l~~L 314 (998)
....+..+|+||+++.... ...+...+ .....+..||.||.... +.. .-.....+.+...
T Consensus 172 a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p 251 (357)
T 3d8b_A 172 ARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLP 251 (357)
T ss_dssp HHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCC
T ss_pred HHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCc
Confidence 3334578999999954310 11111111 11123445665665432 211 1123357889999
Q ss_pred ChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccC-ChHHHHHHH
Q 001897 315 NDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKG-LPLAIITMG 358 (998)
Q Consensus 315 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~ 358 (998)
+.++..+++...+...... -.......|++.+.| .+-.+..++
T Consensus 252 ~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 252 EASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999988777432211 124567788899988 444555443
No 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.94 E-value=6.8e-06 Score=89.84 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=21.2
Q ss_pred CccccEEEEecccCchhhHHH------hhhcCceeeccccc
Q 001897 732 KHDERRVTISGIDLSGEWIGW------LLTNASSLILNNCW 766 (998)
Q Consensus 732 ~~~L~~L~l~~~~l~~~~~~~------~~~~L~~L~L~~c~ 766 (998)
+++|+.|+|+.|.+++..... .+++|+.|+|++|.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 345666666666666543222 25778888887764
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=4.9e-05 Score=83.65 Aligned_cols=196 Identities=14% Similarity=0.079 Sum_probs=99.8
Q ss_pred cccchHHHHHHHHHhh-cCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccC-CCC--------------------eEE
Q 001897 156 HQTTASKTLGKLMKLL-DCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAH-RSG--------------------MVI 213 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l-~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~-~f~--------------------~~~ 213 (998)
...|.++.++.+..++ ..++...+.|+|+.|+||||+|+.++..+....... .++ ..+
T Consensus 15 ~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHL 94 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEE
T ss_pred HhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceE
Confidence 3445566777788877 665555599999999999999999988542211100 010 011
Q ss_pred EEEeCCCC-CHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEE
Q 001897 214 WATVSKEL-NLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKI 290 (998)
Q Consensus 214 wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~i 290 (998)
.+..+... ......++++..+.......... .+ ..+.. +.-++|||++.... ..+.+...+.....+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~l-s~l~~-~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~ 167 (354)
T 1sxj_E 95 EITPSDMGNNDRIVIQELLKEVAQMEQVDFQD-----SK-DGLAH-RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRL 167 (354)
T ss_dssp EECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEE
T ss_pred EecHhhcCCcchHHHHHHHHHHHHhccccccc-----cc-cccCC-CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEE
Confidence 11111100 00001222222221110000000 00 00122 36799999997742 112222211111235677
Q ss_pred EEecCCh-HHHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHHH
Q 001897 291 ILTSRSL-EVCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITMG 358 (998)
Q Consensus 291 ivTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 358 (998)
|++|... .+.. .......+++.+++.++..+.+.+.+......-+-++....|++.++|.+-.+..+.
T Consensus 168 Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 168 IMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 7777642 2211 112236899999999999999988773221110103567789999999887665444
No 180
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=8.2e-06 Score=77.94 Aligned_cols=40 Identities=8% Similarity=0.221 Sum_probs=19.2
Q ss_pred CCcceeeccccccccccccccccccccCCCccEEEeecCccccc
Q 001897 812 PNLEELHLHDLAYLGNISGLVGYLGLRFSKLRLMEVTQCPRLKY 855 (998)
Q Consensus 812 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 855 (998)
.+|++|++++|. +++.. ..... .+++|+.|++++|+.+++
T Consensus 61 ~~L~~LDLs~~~-Itd~G--L~~L~-~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG--FDHME-GLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CCEEEEEEESCC-CCGGG--GGGGT-TCSCCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHHH--HHHhc-CCCCCCEEEeCCCCccCH
Confidence 356777777664 22211 11111 355555555555555544
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.88 E-value=0.00036 Score=75.27 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=87.5
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
.+-|.++|++|+|||++|+.+++.... ..+.++.+ ++ ..... .........+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~--------~~~~v~~~------~l----~~~~~------g~~~~~~~~~f~~a 106 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANS--------TFFSVSSS------DL----VSKWM------GESEKLVKQLFAMA 106 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTC--------EEEEEEHH------HH----HTTTG------GGHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCC--------CEEEEchH------HH----hhccc------chHHHHHHHHHHHH
Confidence 457999999999999999999987421 12333321 11 11100 11222333344444
Q ss_pred HcCCeEEEEEcccccccc-------------ccccc---CCCCCCCCCcEEEEecCChH-----HHhhcCCCeEEEccCC
Q 001897 256 LRESNFLLILDDVWETID-------------LDSLG---VPQPEDHGGSKIILTSRSLE-----VCMAMKTDVEVRVDLL 314 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~~~-------------~~~l~---~~l~~~~~gs~iivTtR~~~-----v~~~~~~~~~~~l~~L 314 (998)
...+..+|+||+++.... ...+. ..+.....+..||.||.... +.. .-...+.+...
T Consensus 107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p 184 (322)
T 3eie_A 107 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 184 (322)
T ss_dssp HHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCC
T ss_pred HhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCC
Confidence 444578999999975421 11111 11111234566666776432 222 23457888999
Q ss_pred ChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCC-hHHHHHH
Q 001897 315 NDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGL-PLAIITM 357 (998)
Q Consensus 315 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~ 357 (998)
+.++-.++|..++....... -......|++.+.|. +-.|..+
T Consensus 185 ~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 185 DLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999998885432211 234567888888874 4344433
No 182
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=3.7e-06 Score=92.00 Aligned_cols=138 Identities=16% Similarity=0.208 Sum_probs=59.7
Q ss_pred hhcCCCCccEEEcCCCCCCCCChhhhcccCCceEeecCCCCCCCCc-cc--cCCCCCCeeeecCC--C------CcccCh
Q 001897 556 FLDGFPALRVLNLSGTRIHSLPLSLLQLHNCRALLLRDCFYLEDLP-AL--GGLTKLQDLDLSAT--S------IRELPR 624 (998)
Q Consensus 556 ~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~i--~~l~~L~~L~l~~~--~------l~~lp~ 624 (998)
++..+++|+.|+++++.-..+|. + .+++|+.|+|..|....... .+ ..+++|++|+|+.+ . +..+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 34555666666666552123333 2 25566666665543211111 12 25666666665421 0 111111
Q ss_pred hh--hcCcCCcEEeCCCCcccccccccc--cCCCCCccEEEcccCcccccccCcccccccccccccccccCceEEEEeec
Q 001897 625 GM--ENLSNLRRLNLSRTHYLKKIQAGI--ICRLSSLEILDMTLSDYHWRVKGQEDEGQTNFEELGCLERLLVLSIRLEN 700 (998)
Q Consensus 625 ~i--~~L~~L~~L~l~~~~~l~~~p~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 700 (998)
.+ ..+++|++|++.+|......+..+ ...+++|++|+++.|.+... +.......+.++++|+.|+++.+.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~------G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE------GARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH------HHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH------HHHHHHhhcccCCcceEEECCCCc
Confidence 11 235566666666555322111110 12355666666665544210 001112233455566666665444
Q ss_pred C
Q 001897 701 I 701 (998)
Q Consensus 701 ~ 701 (998)
+
T Consensus 319 i 319 (362)
T 2ra8_A 319 L 319 (362)
T ss_dssp C
T ss_pred C
Confidence 3
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=4.3e-05 Score=88.27 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=102.6
Q ss_pred cccccchHHHHHHHHHhhcC-----------------CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEE
Q 001897 154 IEHQTTASKTLGKLMKLLDC-----------------DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWAT 216 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~-----------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~ 216 (998)
+....|.++.++++..++.. +..+.+.|+|++|+||||+|+.+++... + .++.++
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-------~-~~i~in 109 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-------Y-DILEQN 109 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-------C-EEEEEC
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-------C-CEEEEe
Confidence 34455666777777777653 1347899999999999999999998641 1 245566
Q ss_pred eCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc-----cccccCCCCCCCCCcEEE
Q 001897 217 VSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID-----LDSLGVPQPEDHGGSKII 291 (998)
Q Consensus 217 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~ii 291 (998)
++.......+...+ ...........-...... ......++.+||||+++.... +..+...+. . .+..||
T Consensus 110 ~s~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~---~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~-~-~~~~iI 183 (516)
T 1sxj_A 110 ASDVRSKTLLNAGV-KNALDNMSVVGYFKHNEE---AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR-K-TSTPLI 183 (516)
T ss_dssp TTSCCCHHHHHHTG-GGGTTBCCSTTTTTC-------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH-H-CSSCEE
T ss_pred CCCcchHHHHHHHH-HHHhccccHHHHHhhhhh---hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH-h-cCCCEE
Confidence 66555443222221 111100000000000000 001124578999999976522 112211111 1 123355
Q ss_pred EecCChH---HHhhcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccC-ChHHHHHHH
Q 001897 292 LTSRSLE---VCMAMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKG-LPLAIITMG 358 (998)
Q Consensus 292 vTtR~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~ 358 (998)
+++.+.. +.........+.+.+++.++..+++.+.+...... --.+....|++.++| ++-++..+.
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5544322 22222344679999999999999988776322111 112346789999999 445555543
No 184
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.82 E-value=0.00033 Score=76.36 Aligned_cols=170 Identities=14% Similarity=0.096 Sum_probs=95.0
Q ss_pred cccccchHHHHHHHHHhhc-----CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLD-----CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQA 228 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 228 (998)
+..+.|.+..+..+..++. ......|.|+|++|+|||++|+.+++.... . .+.+.++.......+.
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~-----~---~~~~~~~~~~~~~~~~- 98 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA-----N---IKTTAAPMIEKSGDLA- 98 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC-----C---EEEEEGGGCCSHHHHH-
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----C---eEEecchhccchhHHH-
Confidence 4445555566666555553 234567899999999999999999876421 1 2334433221111111
Q ss_pred HHHHHhcCCcchhhhHHHHHHHHHHHHH-cCCeEEEEEccccccc--ccccccCC------------------CCCCCCC
Q 001897 229 QIAERLNLDVKMEESMQRLGIRLHERLL-RESNFLLILDDVWETI--DLDSLGVP------------------QPEDHGG 287 (998)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~--~~~~l~~~------------------l~~~~~g 287 (998)
..+. ..+..+|+||+++... ....+... .....++
T Consensus 99 ------------------------~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 99 ------------------------AILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp ------------------------HHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred ------------------------HHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 1111 1236788889887652 11111000 0001123
Q ss_pred cEEEEecCChHH-Hh--hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 288 SKIILTSRSLEV-CM--AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 288 s~iivTtR~~~v-~~--~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
..+|.||..... .. .-.....+.+.+++.++..+++.+.+..... .--.+....|++.+.|.|-.+..+
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 556666654321 11 1122468999999999999999887743221 122456778888999998655443
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.82 E-value=0.00027 Score=76.70 Aligned_cols=171 Identities=16% Similarity=0.101 Sum_probs=99.6
Q ss_pred HHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhcccc-----------------CCCCeEEEEEeC---CC
Q 001897 162 KTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSA-----------------HRSGMVIWATVS---KE 220 (998)
Q Consensus 162 ~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-----------------~~f~~~~wv~~s---~~ 220 (998)
+..+.+...+..+++ ..+.++|+.|+||||+|+.+.+.+...... .+++. .++... ..
T Consensus 9 ~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~~~ 87 (334)
T 1a5t_A 9 PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGKNT 87 (334)
T ss_dssp HHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTCSS
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccCCC
Confidence 445666777766654 579999999999999999999876432211 12332 233322 11
Q ss_pred CCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCChH
Q 001897 221 LNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRSLE 298 (998)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~ 298 (998)
..+.++ +++.+.+.... ..+++-++|+|+++... ..+.+...+-....++.+|++|...+
T Consensus 88 ~~i~~i-r~l~~~~~~~~-----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 88 LGVDAV-REVTEKLNEHA-----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp BCHHHH-HHHHHHTTSCC-----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCHHHH-HHHHHHHhhcc-----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 222221 22222221100 11347789999998752 22333222222234566666665532
Q ss_pred -HHh-hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 299 -VCM-AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 299 -v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
+.. ..+....+++.++++++..+.+.+.. .-..+.+..+++.++|.|..+..+
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 22334689999999999999988775 112345678999999999776543
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.82 E-value=0.00054 Score=73.68 Aligned_cols=157 Identities=15% Similarity=0.173 Sum_probs=87.0
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
.+-|.++|++|+|||++|+.+++.... . ..+.+..+.-.+. ..+ .. +.....+.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~----~---~~~~i~~~~l~~~---------~~g------~~-~~~~~~lf~~a 101 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANN----S---TFFSISSSDLVSK---------WLG------ES-EKLVKNLFQLA 101 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTS----C---EEEEEECCSSCCS---------SCC------SC-HHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCC----C---cEEEEEhHHHHhh---------hhh------HH-HHHHHHHHHHH
Confidence 468999999999999999999986411 1 1233444322110 000 01 11222333333
Q ss_pred HcCCeEEEEEcccccccc-------------cccccC---CCCCCCCCcEEEEecCCh-----HHHhhcCCCeEEEccCC
Q 001897 256 LRESNFLLILDDVWETID-------------LDSLGV---PQPEDHGGSKIILTSRSL-----EVCMAMKTDVEVRVDLL 314 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~~~-------------~~~l~~---~l~~~~~gs~iivTtR~~-----~v~~~~~~~~~~~l~~L 314 (998)
...+..+|+||+++.... ...+.. .+.....+..||.||... .+.+ .-...+.+...
T Consensus 102 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P 179 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 179 (322)
T ss_dssp HHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCC
T ss_pred HhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCc
Confidence 344578999999976511 000100 011122345566566532 2222 33467889999
Q ss_pred ChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh-HHHHHHH
Q 001897 315 NDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP-LAIITMG 358 (998)
Q Consensus 315 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 358 (998)
+.++-.+++..+....... --......|++.+.|.. -.+..+.
T Consensus 180 ~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 180 EPHARAAMFKLHLGTTQNS-LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp CHHHHHHHHHHHHTTCCBC-CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999998877433221 12345678888888864 3344443
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.77 E-value=0.0012 Score=70.21 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=85.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+.|.|+|++|+||||+|+.+++.... ..+.+.++.... ... .........+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~--------~~~~i~~~~l~~--------------~~~--~~~~~~~~~~~~~ 108 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA--------TFLNISAASLTS--------------KYV--GDGEKLVRALFAV 108 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC--------EEEEEESTTTSS--------------SSC--SCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC--------CeEEeeHHHHhh--------------ccc--chHHHHHHHHHHH
Confidence 3568899999999999999999886421 123444433211 000 0111222223333
Q ss_pred HHcCCeEEEEEccccccccc-------------cccc---CCCCC--CCCCcEEEEecCCh-----HHHhhcCCCeEEEc
Q 001897 255 LLRESNFLLILDDVWETIDL-------------DSLG---VPQPE--DHGGSKIILTSRSL-----EVCMAMKTDVEVRV 311 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~~-------------~~l~---~~l~~--~~~gs~iivTtR~~-----~v~~~~~~~~~~~l 311 (998)
....+..+|+||+++....- ..+. ...+. .+.+..||.||... .+... ....+.+
T Consensus 109 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~ 186 (297)
T 3b9p_A 109 ARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR--FTKRVYV 186 (297)
T ss_dssp HHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH--CCEEEEC
T ss_pred HHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh--CCeEEEe
Confidence 33345789999999764210 0010 01111 12345566677643 22332 2356788
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChH-HHHHH
Q 001897 312 DLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPL-AIITM 357 (998)
Q Consensus 312 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 357 (998)
...+.++...++...+..... .-.......+++.+.|.+- ++..+
T Consensus 187 ~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 187 SLPDEQTRELLLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CCCCHHHHHHHHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 888888888888777643221 1123456788889988775 44343
No 188
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.76 E-value=0.00021 Score=78.94 Aligned_cols=49 Identities=8% Similarity=-0.029 Sum_probs=34.4
Q ss_pred eEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHcc-CChHHHHH
Q 001897 307 VEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECK-GLPLAIIT 356 (998)
Q Consensus 307 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~-glPlai~~ 356 (998)
..+.+.+++.++..+++.+++..... .--.+....|++.+. |.|-.+..
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 45799999999999999987743221 122456778888887 77765543
No 189
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=1.8e-05 Score=75.52 Aligned_cols=91 Identities=16% Similarity=0.125 Sum_probs=57.7
Q ss_pred CCCCEEEEeCCCCccccCCCCCCCCCCCCCcceeeccccccccccccccccccc---cCCCccEEEeecCcccccccchh
Q 001897 784 ASLKSLTIAGSRSSLRPIGGCAAHDDLLPNLEELHLHDLAYLGNISGLVGYLGL---RFSKLRLMEVTQCPRLKYLLTYG 860 (998)
Q Consensus 784 ~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~L~~l~~~~ 860 (998)
..|+.|++++|.+... +. .....+++|++|+|++|..+++..- ..... ..++|+.|++++|+++++-...
T Consensus 61 ~~L~~LDLs~~~Itd~---GL-~~L~~~~~L~~L~L~~C~~ItD~gL--~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~- 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI---GF-DHMEGLQYVEKIRLCKCHYIEDGCL--ERLSQLENLQKSMLEMEIISCGNVTDKGII- 133 (176)
T ss_dssp CCEEEEEEESCCCCGG---GG-GGGTTCSCCCEEEEESCTTCCHHHH--HHHHTCHHHHHHCCEEEEESCTTCCHHHHH-
T ss_pred ceEeEEeCcCCCccHH---HH-HHhcCCCCCCEEEeCCCCccCHHHH--HHHHhcccccCCCCEEEcCCCCcCCHHHHH-
Confidence 4688888888874422 11 2235688899999998877665321 11110 1246788888888877765432
Q ss_pred HHHhhCCCCCEEEEeccccchh
Q 001897 861 SFILALPNLQEIKVSFCDNLVE 882 (998)
Q Consensus 861 ~~~~~l~~L~~L~l~~c~~L~~ 882 (998)
.+..+++|+.|+|++|+.++.
T Consensus 134 -~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 -ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -HGGGCTTCCEEEEESCTTCCC
T ss_pred -HHhcCCCCCEEECCCCCCCCc
Confidence 245677777777777776654
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.74 E-value=0.00022 Score=77.10 Aligned_cols=164 Identities=18% Similarity=0.122 Sum_probs=92.8
Q ss_pred HHHHHhhcCC--CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhh
Q 001897 165 GKLMKLLDCD--EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEE 242 (998)
Q Consensus 165 ~~l~~~l~~~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 242 (998)
..+..+.... ....+.|+|++|+||||||+.+++..... .. .++++++ .++...+...+...
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~----~~-~~~~i~~------~~~~~~~~~~~~~~----- 87 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR----GY-RVIYSSA------DDFAQAMVEHLKKG----- 87 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT----TC-CEEEEEH------HHHHHHHHHHHHHT-----
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC----CC-EEEEEEH------HHHHHHHHHHHHcC-----
Confidence 3344444333 35678999999999999999999876432 11 2455543 23333333333210
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEEcccccccc---c-ccccCCCC-CCCCCcEEEEecCC---------hHHHhhcCCCeE
Q 001897 243 SMQRLGIRLHERLLRESNFLLILDDVWETID---L-DSLGVPQP-EDHGGSKIILTSRS---------LEVCMAMKTDVE 308 (998)
Q Consensus 243 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~---~-~~l~~~l~-~~~~gs~iivTtR~---------~~v~~~~~~~~~ 308 (998)
.. ..+..... +.-+|+|||+..... + +.+...+. ....|..||+||.. ..+...+.....
T Consensus 88 ~~----~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 88 TI----NEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp CH----HHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred cH----HHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 11 11222222 266999999976531 1 11211111 01235578887753 223334445567
Q ss_pred EEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHH
Q 001897 309 VRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLA 353 (998)
Q Consensus 309 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 353 (998)
+++.+ +.++..+++.+.+..... .--.+....|++.+ |.+-.
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHH
Confidence 99999 999999999888742221 12245677888888 76543
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.72 E-value=0.00014 Score=71.35 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 155 EHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
....|+++.++.+.+.+.....+.+.|+|++|+||||+|+.+++...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34456778888888888777677889999999999999999998764
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.72 E-value=0.00095 Score=74.11 Aligned_cols=179 Identities=13% Similarity=0.077 Sum_probs=94.0
Q ss_pred cccccchHHHHHHHHHhhc------------CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC
Q 001897 154 IEHQTTASKTLGKLMKLLD------------CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL 221 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~ 221 (998)
+....|.+..++.+..++. ....+-|.|+|++|+|||++|+.+++.... ..+.++++.-.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~--------~~~~v~~~~l~ 185 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA--------TFFNISAASLT 185 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC--------EEEEECSCCC-
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC--------cEEEeeHHHhh
Confidence 3444455556666655541 123468999999999999999999876321 23344443322
Q ss_pred CHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc-------------cccccCCC---C-CC
Q 001897 222 NLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID-------------LDSLGVPQ---P-ED 284 (998)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~-------------~~~l~~~l---~-~~ 284 (998)
+. . .+ .. ......+..........+|+||+++.... ...+...+ . ..
T Consensus 186 ~~--~-------~g------~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 186 SK--Y-------VG------EG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ---------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred cc--c-------cc------hH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 10 0 00 00 11122223333333468999999975410 00111000 0 01
Q ss_pred CCCcEEEEecCChH-HHh--hcCCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChH-HHHHH
Q 001897 285 HGGSKIILTSRSLE-VCM--AMKTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPL-AIITM 357 (998)
Q Consensus 285 ~~gs~iivTtR~~~-v~~--~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 357 (998)
.....||.||.... +.. .-.....+.+...+.++..+++...+...... -.......|++.+.|..- ++..+
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 22345565665422 111 11233568899999999999998887443221 224466788888888654 44443
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.70 E-value=0.00047 Score=75.30 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=85.2
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLL 256 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 256 (998)
+-|.|+|++|+|||++|+.+++.... ..+.+..+ ++... .. ... ......+.....
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~--------~~~~v~~~------~l~~~----~~-----g~~-~~~~~~~f~~a~ 140 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANS--------TFFSVSSS------DLVSK----WM-----GES-EKLVKQLFAMAR 140 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC--------EEEEEEHH------HHHSC----C--------C-HHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC--------CEEEeeHH------HHhhh----hc-----chH-HHHHHHHHHHHH
Confidence 46889999999999999999987531 12233322 11111 00 001 112222333333
Q ss_pred cCCeEEEEEcccccccc-------------cccccCC---CCCCCCCcEEEEecCCh-----HHHhhcCCCeEEEccCCC
Q 001897 257 RESNFLLILDDVWETID-------------LDSLGVP---QPEDHGGSKIILTSRSL-----EVCMAMKTDVEVRVDLLN 315 (998)
Q Consensus 257 ~~~r~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~gs~iivTtR~~-----~v~~~~~~~~~~~l~~L~ 315 (998)
..+..+|+||+++.... ...+... +.....+..||.||... .+.. .-...+.+...+
T Consensus 141 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~ 218 (355)
T 2qp9_X 141 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPD 218 (355)
T ss_dssp HTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCC
T ss_pred HcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcC
Confidence 34588999999976421 1111111 11112355566666543 2222 334678899999
Q ss_pred hHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCC-hHHHHHHH
Q 001897 316 DDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGL-PLAIITMG 358 (998)
Q Consensus 316 ~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 358 (998)
.++-.+++..++....... -......|++.+.|. +-.|..+.
T Consensus 219 ~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 219 LAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999988875432211 134567888888884 43444433
No 194
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.62 E-value=2.2e-05 Score=77.14 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=64.8
Q ss_pred hhcCCCCccEEEcCCC-CCC-----CCChhhhcccCCceEeecCCCCCCC----Cc-cccCCCCCCeeeecCCCCcc---
Q 001897 556 FLDGFPALRVLNLSGT-RIH-----SLPLSLLQLHNCRALLLRDCFYLED----LP-ALGGLTKLQDLDLSATSIRE--- 621 (998)
Q Consensus 556 ~~~~l~~Lr~L~l~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~~~~~----lp-~i~~l~~L~~L~l~~~~l~~--- 621 (998)
++...+.|+.|+|++| .+. .+...+...++|++|+|++|..... +. .+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456677777777777 665 2344555566777777777653221 11 24455667777777777662
Q ss_pred --cChhhhcCcCCcEEeC--CCCccccc-----ccccccCCCCCccEEEcccCcc
Q 001897 622 --LPRGMENLSNLRRLNL--SRTHYLKK-----IQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 622 --lp~~i~~L~~L~~L~l--~~~~~l~~-----~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
+...+...++|++|++ ++|. ++. +.. .+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 4455566667777777 5555 221 111 244556677777776654
No 195
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.60 E-value=9.5e-05 Score=79.53 Aligned_cols=133 Identities=13% Similarity=0.144 Sum_probs=72.1
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
.....|.|+|++|+|||++|+.+++.+......... ..+.++.+.- .... ........ ..+.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~-~~~~~~~~~l--------------~~~~-~g~~~~~~-~~~~~ 127 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKG-HLVSVTRDDL--------------VGQY-IGHTAPKT-KEVLK 127 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSC-CEEEECGGGT--------------CCSS-TTCHHHHH-HHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCC-cEEEEcHHHh--------------hhhc-ccccHHHH-HHHHH
Confidence 345579999999999999999998876432111111 2233332211 0000 00011111 11212
Q ss_pred HHHcCCeEEEEEcccccc-----------cccccccCCCCCCCCCcEEEEecCChHH----------HhhcCCCeEEEcc
Q 001897 254 RLLRESNFLLILDDVWET-----------IDLDSLGVPQPEDHGGSKIILTSRSLEV----------CMAMKTDVEVRVD 312 (998)
Q Consensus 254 ~l~~~~r~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~v----------~~~~~~~~~~~l~ 312 (998)
.. +.-+|+||+++.. .....+...+.....+..||.||..... ... ....+++.
T Consensus 128 ~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~ 202 (309)
T 3syl_A 128 RA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFP 202 (309)
T ss_dssp HH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEEC
T ss_pred hc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcC
Confidence 11 2459999999843 1112222222223345678888764322 222 12678999
Q ss_pred CCChHHHHHHHHHhhC
Q 001897 313 LLNDDEAWQLFSQNAG 328 (998)
Q Consensus 313 ~L~~~~~~~lf~~~~~ 328 (998)
+++.++-.+++...+.
T Consensus 203 ~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 203 DYSDEELFEIAGHMLD 218 (309)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999887763
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0034 Score=68.20 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=85.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+-|.++|++|.|||.||+++++..... .+.+..+.-.+ ....++ +...+.+...
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~--------f~~v~~s~l~s---------------k~vGes-e~~vr~lF~~ 236 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCK--------FIRVSGAELVQ---------------KYIGEG-SRMVRELFVM 236 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCE--------EEEEEGGGGSC---------------SSTTHH-HHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCC--------ceEEEhHHhhc---------------cccchH-HHHHHHHHHH
Confidence 45678999999999999999999975321 23444432211 001111 2223334444
Q ss_pred HHcCCeEEEEEcccccccc----------------cccccCCCC--CCCCCcEEEEecCChHH-----HhhcCCCeEEEc
Q 001897 255 LLRESNFLLILDDVWETID----------------LDSLGVPQP--EDHGGSKIILTSRSLEV-----CMAMKTDVEVRV 311 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~iivTtR~~~v-----~~~~~~~~~~~l 311 (998)
......++|++|+++.... +..+...+. ....+..||.||...+. .+.-.-+..+++
T Consensus 237 Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i 316 (405)
T 4b4t_J 237 AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF 316 (405)
T ss_dssp HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEEC
T ss_pred HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEc
Confidence 4445589999999875410 001111110 12334456667753322 221234568999
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 312 DLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 312 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
..-+.++-.++|+.+........+.. ...|++.+.|.-
T Consensus 317 ~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~S 354 (405)
T 4b4t_J 317 PPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCS 354 (405)
T ss_dssp CCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCC
T ss_pred CCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCC
Confidence 99999999999988774432222211 456778887754
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=0.00057 Score=74.44 Aligned_cols=176 Identities=13% Similarity=0.122 Sum_probs=96.8
Q ss_pred ccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCC-eEEEEEeCCCCCHHHHHHHHHHHhc
Q 001897 157 QTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSG-MVIWATVSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (998)
..|.+..++.+...+..+++..+.++|++|+||||+|+.++..+... .+. .+.-++.+.......+...+ ..+
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~----~~~~~~~~~~~~~~~~~~~ir~~i-~~~- 100 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK----NYSNMVLELNASDDRGIDVVRNQI-KDF- 100 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT----SHHHHEEEECTTSCCSHHHHHTHH-HHH-
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC----CccceEEEEcCcccccHHHHHHHH-HHH-
Confidence 33455666777777777766569999999999999999999876422 111 12233333322222221111 110
Q ss_pred CCcchhhhHHHHHHHHHHHH--HcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCChH-HHh-hcCCCeEE
Q 001897 236 LDVKMEESMQRLGIRLHERL--LRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRSLE-VCM-AMKTDVEV 309 (998)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~l--~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~~~~~~~~ 309 (998)
.+.. ..+.+-++|+|+++... ..+.+...+.......++|++|.... +.. ..+....+
T Consensus 101 ----------------~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 101 ----------------ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp ----------------HHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ----------------HhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 0000 01236789999987542 12222211111123556666665432 111 11223578
Q ss_pred EccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHH
Q 001897 310 RVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAII 355 (998)
Q Consensus 310 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 355 (998)
++.+++.++..+.+.+.+..... .--++..+.|++.++|.+--+.
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~-~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKL-KLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC-CBCHHHHHHHHHHHTTCHHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 99999999988888776632211 1123456788889999876543
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.59 E-value=0.0018 Score=72.91 Aligned_cols=159 Identities=15% Similarity=0.137 Sum_probs=84.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+.|.|+|++|+|||+||+.+++.... . ..+.++.+.- .... .+.. ... ...+...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~----~---~~~~v~~~~l------~~~~---~g~~---~~~----~~~~f~~ 222 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANN----S---TFFSISSSDL------VSKW---LGES---EKL----VKNLFQL 222 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCS----S---EEEEECCC------------------C---CCT----HHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC----C---CEEEEeHHHH------Hhhh---cchH---HHH----HHHHHHH
Confidence 3468999999999999999999986411 1 1222333221 1111 1110 011 1122222
Q ss_pred HHcCCeEEEEEcccccccc-------------cccccCCCC---CCCCCcEEEEecCChHHH-h--hcCCCeEEEccCCC
Q 001897 255 LLRESNFLLILDDVWETID-------------LDSLGVPQP---EDHGGSKIILTSRSLEVC-M--AMKTDVEVRVDLLN 315 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~-------------~~~l~~~l~---~~~~gs~iivTtR~~~v~-~--~~~~~~~~~l~~L~ 315 (998)
....+..+|+||+++.... ...+...+. ....+..||.||...... . .-.....+.+...+
T Consensus 223 a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~ 302 (444)
T 2zan_A 223 ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE 302 (444)
T ss_dssp HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCC
T ss_pred HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcC
Confidence 3334578999999975410 011111111 123456677677643221 1 11234578888888
Q ss_pred hHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCC-hHHHHHH
Q 001897 316 DDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGL-PLAIITM 357 (998)
Q Consensus 316 ~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~ 357 (998)
.++-..+|..++....... -......|++.+.|. +-.|..+
T Consensus 303 ~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 303 AHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp HHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999988874432111 134567888888884 3344333
No 199
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.53 E-value=0.00047 Score=74.60 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=94.5
Q ss_pred cccccchHHHHHHHHHhhcCCCc-eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEI-RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 232 (998)
+....|.++.+..+..++..... .++.+.|++|+|||++|+.+++... ...+.++.+.. ....+...+ .
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~--------~~~~~i~~~~~-~~~~i~~~~-~ 94 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN--------ADMMFVNGSDC-KIDFVRGPL-T 94 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT--------EEEEEEETTTC-CHHHHHTHH-H
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--------CCEEEEccccc-CHHHHHHHH-H
Confidence 34445566677777777776554 5677788899999999999988642 12445554432 222221111 1
Q ss_pred HhcCCcchhhhHHHHHHHHHHHH-HcCCeEEEEEccccccc---ccccccCCCCCCCCCcEEEEecCChH-----HHhhc
Q 001897 233 RLNLDVKMEESMQRLGIRLHERL-LRESNFLLILDDVWETI---DLDSLGVPQPEDHGGSKIILTSRSLE-----VCMAM 303 (998)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l-~~~~r~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtR~~~-----v~~~~ 303 (998)
.. .... ..+++.++|+||++... ..+.+...+.....+.++|+||.... +...+
T Consensus 95 ~~-----------------~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 95 NF-----------------ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HH-----------------HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HH-----------------HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 10 0000 01247899999998653 22222221111123567887776532 22222
Q ss_pred CCCeEEEccCCChHHHHHHH-------HHhhCCCCCCCCchHHHHHHHHHccCChHHHH
Q 001897 304 KTDVEVRVDLLNDDEAWQLF-------SQNAGVAASKDPIKPFAQAIARECKGLPLAII 355 (998)
Q Consensus 304 ~~~~~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 355 (998)
..+++.+++.++-.+++ .+.+......-.-.+....|++.++|.+-.+.
T Consensus 158 ---~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 158 ---RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp ---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred ---cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHH
Confidence 47899999988744332 22221111111112667788888988765443
No 200
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.51 E-value=1.2e-05 Score=83.00 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=26.5
Q ss_pred cccCCceEeecCCCCCC--CCc-cccCCCCCCeeeecCCCCcccChhhhcCc--CCcEEeCCCCcc
Q 001897 582 QLHNCRALLLRDCFYLE--DLP-ALGGLTKLQDLDLSATSIRELPRGMENLS--NLRRLNLSRTHY 642 (998)
Q Consensus 582 ~l~~L~~L~L~~~~~~~--~lp-~i~~l~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~l~~~~~ 642 (998)
++++|+.|+|++|.... .+| .+..+++|++|+|++|.++.+ ..+..+. +|++|++++|..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcC
Confidence 34445555555443322 112 133455555555555555444 2233333 555555555553
No 201
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0044 Score=68.26 Aligned_cols=152 Identities=17% Similarity=0.186 Sum_probs=84.9
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
...+-|.++|++|.|||+||+++++..... .+.+..+.-.+ . .... .+...+.+..
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~--------fi~vs~s~L~s--------------k-~vGe-sek~ir~lF~ 296 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDAT--------FIRVIGSELVQ--------------K-YVGE-GARMVRELFE 296 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCE--------EEEEEGGGGCC--------------C-SSSH-HHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCC--------eEEEEhHHhhc--------------c-cCCH-HHHHHHHHHH
Confidence 356789999999999999999999975321 23444332110 0 0111 1222333334
Q ss_pred HHHcCCeEEEEEccccccccc----------------ccccCCC--CCCCCCcEEEEecCChHH-----HhhcCCCeEEE
Q 001897 254 RLLRESNFLLILDDVWETIDL----------------DSLGVPQ--PEDHGGSKIILTSRSLEV-----CMAMKTDVEVR 310 (998)
Q Consensus 254 ~l~~~~r~LlVlDdv~~~~~~----------------~~l~~~l--~~~~~gs~iivTtR~~~v-----~~~~~~~~~~~ 310 (998)
.......++|++|+++....- ..+...+ .....+..||.||...+. .+.-.-+..++
T Consensus 297 ~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~ 376 (467)
T 4b4t_H 297 MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVE 376 (467)
T ss_dssp HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEEC
T ss_pred HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEE
Confidence 444455899999998754110 0000000 012234456667753222 11113457889
Q ss_pred ccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 311 VDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 311 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
+..-+.++-.++|+.+........+.. ...|++.+.|.-
T Consensus 377 i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 377 FSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred eCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 998899999999988875433222211 356778887753
No 202
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.42 E-value=0.012 Score=65.49 Aligned_cols=119 Identities=7% Similarity=0.182 Sum_probs=61.5
Q ss_pred cceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCC---CCCCCh-hhhcccCCceEeecCCCCCCCCc--cccCCCCCC
Q 001897 537 ETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTR---IHSLPL-SLLQLHNCRALLLRDCFYLEDLP--ALGGLTKLQ 610 (998)
Q Consensus 537 ~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~---~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp--~i~~l~~L~ 610 (998)
.|..+.+..+ +..+....|.++.+|+.+.+..+. ++.+.. .|..+.+|+.+.+..+ +..++ .+..+.+|+
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCC
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccc
Confidence 3566665442 555666666777777777665542 444433 4555666666555432 33333 356666666
Q ss_pred eeeecCCCCcccCh-hhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcc
Q 001897 611 DLDLSATSIRELPR-GMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMT 663 (998)
Q Consensus 611 ~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~ 663 (998)
.+.+..+ +..++. .+..+.+|+.+.+..+ +..+....+. ..+|+.+.+.
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip 190 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIP 190 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEEC
T ss_pred cccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEEC
Confidence 6666432 333332 2455566666665443 3444443332 2445555543
No 203
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.41 E-value=0.00079 Score=76.49 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=81.6
Q ss_pred cccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCC-C-eEEEEEeCCCCCHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRS-G-MVIWATVSKELNLRWVQAQIA 231 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f-~-~~~wv~~s~~~~~~~~~~~i~ 231 (998)
+.+..|+++++..++..+......-+.|+|++|+|||++|+.++..+....+-... + ..+.++++
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------
Confidence 34456788889999988876666677899999999999999999886432211111 1 12233332
Q ss_pred HHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHHh-------hcC
Q 001897 232 ERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVCM-------AMK 304 (998)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~-------~~~ 304 (998)
....+. .......+.......++.+|++|. .......+...+. . ...++|.+|....... ...
T Consensus 246 ~~~~g~------~e~~~~~~~~~~~~~~~~iLfiD~--~~~a~~~L~~~L~-~-g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 246 TKYRGE------FEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA-R-GELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT-S-SSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ccccch------HHHHHHHHHHHHHhcCCeEEEEeC--chhHHHHHHHhhc-C-CCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 000000 001112223333334578899991 1112222333332 1 2345666555433111 011
Q ss_pred CCeEEEccCCChHHHHHHHHHhhC
Q 001897 305 TDVEVRVDLLNDDEAWQLFSQNAG 328 (998)
Q Consensus 305 ~~~~~~l~~L~~~~~~~lf~~~~~ 328 (998)
--..+.+.+.+.++..+++...+.
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHH
Confidence 123689999999999999987763
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.40 E-value=0.0023 Score=68.17 Aligned_cols=154 Identities=13% Similarity=0.149 Sum_probs=82.1
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
...+.|.|+|++|+|||++|+.+++.... ..+.+ +..++.... .+... .. ...+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~--------~~i~v------~~~~l~~~~---~g~~~---~~----~~~~f~ 102 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISI------KGPELLTMW---FGESE---AN----VREIFD 102 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTC--------EEEEE------CHHHHHHHH---HTTCT---TH----HHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCC--------CEEEE------EhHHHHhhh---cCchH---HH----HHHHHH
Confidence 34568999999999999999999986421 11222 222333222 12110 11 122223
Q ss_pred HHHcCCeEEEEEcccccccc----------------cccccCCCC--CCCCCcEEEEecCChHHH-hh-c---CCCeEEE
Q 001897 254 RLLRESNFLLILDDVWETID----------------LDSLGVPQP--EDHGGSKIILTSRSLEVC-MA-M---KTDVEVR 310 (998)
Q Consensus 254 ~l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~iivTtR~~~v~-~~-~---~~~~~~~ 310 (998)
........+|+||+++.... ...+...+. ....+..||.||...... .. . .-...+.
T Consensus 103 ~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~ 182 (301)
T 3cf0_A 103 KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIY 182 (301)
T ss_dssp HHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEE
T ss_pred HHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEe
Confidence 33333478999999974310 011111110 112356677777654321 11 1 2335789
Q ss_pred ccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHH
Q 001897 311 VDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLA 353 (998)
Q Consensus 311 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 353 (998)
+...+.++-.+++...........+.. ...+++.+.|.|-+
T Consensus 183 i~~p~~~~r~~il~~~l~~~~~~~~~~--~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 183 IPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNGFSGA 223 (301)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHTCSSCCHH
T ss_pred cCCcCHHHHHHHHHHHHccCCCCccch--HHHHHHHcCCCCHH
Confidence 999999998899888774322211111 23555666666543
No 205
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0054 Score=66.86 Aligned_cols=151 Identities=14% Similarity=0.191 Sum_probs=82.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+-|.++|++|.|||.||+++++..... .+.++.++-.+ . ... ..+...+.+...
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~--------fi~v~~s~l~s--------------k-~vG-esek~ir~lF~~ 270 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSAT--------FLRIVGSELIQ--------------K-YLG-DGPRLCRQIFKV 270 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCE--------EEEEESGGGCC--------------S-SSS-HHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCC--------EEEEEHHHhhh--------------c-cCc-hHHHHHHHHHHH
Confidence 35789999999999999999999975321 23343332110 0 011 112233334444
Q ss_pred HHcCCeEEEEEcccccccc----------------cccccCCCC--CCCCCcEEEEecCChHHH-hhc----CCCeEEEc
Q 001897 255 LLRESNFLLILDDVWETID----------------LDSLGVPQP--EDHGGSKIILTSRSLEVC-MAM----KTDVEVRV 311 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~iivTtR~~~v~-~~~----~~~~~~~l 311 (998)
......++|++|+++.... +..+...+. ....+..||.||...+.. ..+ .-+..+++
T Consensus 271 Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v 350 (437)
T 4b4t_I 271 AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILF 350 (437)
T ss_dssp HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECC
T ss_pred HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEc
Confidence 4445589999999875411 000100000 122344566677544332 222 12346788
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 312 DLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 312 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
..-+.++-.++|..+........+.. ...|++.+.|.-
T Consensus 351 ~lPd~~~R~~Il~~~l~~~~l~~dvd--l~~LA~~T~GfS 388 (437)
T 4b4t_I 351 ENPDLSTKKKILGIHTSKMNLSEDVN--LETLVTTKDDLS 388 (437)
T ss_dssp CCCCHHHHHHHHHHHHTTSCBCSCCC--HHHHHHHCCSCC
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 88888888899988775432222211 356777777653
No 206
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0051 Score=67.95 Aligned_cols=151 Identities=19% Similarity=0.272 Sum_probs=83.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+-|.++|++|.|||++|+++++..... .+.+..+.-.+ . ....+ ......+...
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~--------~~~v~~s~l~s--------------k-~~Ges-e~~ir~~F~~ 269 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGAN--------FIFSPASGIVD--------------K-YIGES-ARIIREMFAY 269 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE--------EEEEEGGGTCC--------------S-SSSHH-HHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC--------EEEEehhhhcc--------------c-cchHH-HHHHHHHHHH
Confidence 45789999999999999999999975321 23444433211 0 01111 2223333333
Q ss_pred HHcCCeEEEEEcccccccc----------------cccccCCC--CCCCCCcEEEEecCChHHH-hhc-C---CCeEEEc
Q 001897 255 LLRESNFLLILDDVWETID----------------LDSLGVPQ--PEDHGGSKIILTSRSLEVC-MAM-K---TDVEVRV 311 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l--~~~~~gs~iivTtR~~~v~-~~~-~---~~~~~~l 311 (998)
......++|++|+++.... +..+...+ .....+..||.||...+.. ..+ . -+..+++
T Consensus 270 A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i 349 (437)
T 4b4t_L 270 AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEI 349 (437)
T ss_dssp HHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECC
T ss_pred HHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeec
Confidence 4445589999999975411 00111111 0122345677777644332 121 1 2456888
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 312 DLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 312 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
..-+.++-.++|+.+........+.. ...+++.+.|.-
T Consensus 350 ~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~s 387 (437)
T 4b4t_L 350 PLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFN 387 (437)
T ss_dssp CCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCC
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCC
Confidence 88888888888887774322222211 356777777754
No 207
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.34 E-value=0.00023 Score=73.49 Aligned_cols=78 Identities=27% Similarity=0.293 Sum_probs=57.0
Q ss_pred cCCCCccEEEcCCCCCCCCC---hhhhcccCCceEeecCCCCCCCCccccCCC--CCCeeeecCCCCc-ccCh-------
Q 001897 558 DGFPALRVLNLSGTRIHSLP---LSLLQLHNCRALLLRDCFYLEDLPALGGLT--KLQDLDLSATSIR-ELPR------- 624 (998)
Q Consensus 558 ~~l~~Lr~L~l~~~~~~~lp---~~i~~l~~L~~L~L~~~~~~~~lp~i~~l~--~L~~L~l~~~~l~-~lp~------- 624 (998)
.++++|+.|+|++|.+..++ ..+..+++|++|+|++|... .+..+..+. +|++|+|++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-CchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45788899999999887654 56678999999999987644 334333333 8999999999887 3542
Q ss_pred hhhcCcCCcEEe
Q 001897 625 GMENLSNLRRLN 636 (998)
Q Consensus 625 ~i~~L~~L~~L~ 636 (998)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 256778888776
No 208
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.33 E-value=0.00012 Score=71.77 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=75.7
Q ss_pred CCCCcceEEEecCCCCCCC-----CChhhhcCCCCccEEEcCCCCCCC-----CChhhhcccCCceEeecCCCCCCC---
Q 001897 533 VHCPETLTLLLQGNFPLGR-----VPEKFLDGFPALRVLNLSGTRIHS-----LPLSLLQLHNCRALLLRDCFYLED--- 599 (998)
Q Consensus 533 ~~~~~l~~L~l~~~~~~~~-----l~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~~~--- 599 (998)
..++.+++|++++|..+.. +. ..+...+.|++|+|++|.+.. +...+...++|++|+|++|.....
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 3456667777766522221 11 224567889999999998863 445566778899999998865432
Q ss_pred -Cc-cccCCCCCCeeee--cCCCCc-----ccChhhhcCcCCcEEeCCCCc
Q 001897 600 -LP-ALGGLTKLQDLDL--SATSIR-----ELPRGMENLSNLRRLNLSRTH 641 (998)
Q Consensus 600 -lp-~i~~l~~L~~L~l--~~~~l~-----~lp~~i~~L~~L~~L~l~~~~ 641 (998)
+. .+...++|++|+| ++|.+. .+...+...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 22 4777888999999 778887 255567777899999999887
No 209
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.32 E-value=0.00069 Score=83.36 Aligned_cols=158 Identities=13% Similarity=0.182 Sum_probs=83.7
Q ss_pred cccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCC--CeEEEEEeCCCCCHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRS--GMVIWATVSKELNLRWVQAQIA 231 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~ 231 (998)
+.+..|+++++..+++.+......-+.++|++|+||||+|+.+++.+....+.... ..+++++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 34456778899999998877666678999999999999999999886432221111 1244444322110
Q ss_pred HHhcCCcchhhhHHHHHHHHHHHHHc-CCeEEEEEcccccccc-------cc---cccCCCCCCCCCcEEEEecCChHHH
Q 001897 232 ERLNLDVKMEESMQRLGIRLHERLLR-ESNFLLILDDVWETID-------LD---SLGVPQPEDHGGSKIILTSRSLEVC 300 (998)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~~-------~~---~l~~~l~~~~~gs~iivTtR~~~v~ 300 (998)
+.. ...........+...... +++.+|++|++..... ++ .+...+ .. .+..+|.+|......
T Consensus 240 ---g~~--~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 240 ---GAK--YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATTLDEYR 312 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEECHHHHH
T ss_pred ---cCc--cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecCchHHh
Confidence 000 001122222333333333 3578999999976521 11 111111 11 233455555433221
Q ss_pred -----hhc-CCCeEEEccCCChHHHHHHHHHhh
Q 001897 301 -----MAM-KTDVEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 301 -----~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 327 (998)
... .-...+.+.+.+.++..+++....
T Consensus 313 ~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 313 EIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 111 112358899999999999887544
No 210
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0026 Score=70.25 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=81.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+-|.++|++|.|||++|+++++..... .+.+..+.-.+ . .... .+...+.+...
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~--------f~~v~~s~l~~--------------~-~vGe-se~~ir~lF~~ 269 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNAT--------FLKLAAPQLVQ--------------M-YIGE-GAKLVRDAFAL 269 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE--------EEEEEGGGGCS--------------S-CSSH-HHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCC--------EEEEehhhhhh--------------c-ccch-HHHHHHHHHHH
Confidence 45789999999999999999999975321 23444332110 0 0011 11222333333
Q ss_pred HHcCCeEEEEEcccccccc----------------cccccCCCC--CCCCCcEEEEecCChHH-Hhhc----CCCeEEEc
Q 001897 255 LLRESNFLLILDDVWETID----------------LDSLGVPQP--EDHGGSKIILTSRSLEV-CMAM----KTDVEVRV 311 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~iivTtR~~~v-~~~~----~~~~~~~l 311 (998)
......++|++|+++.... ...+...+. ....+-.||.||...+. -..+ .-+..+++
T Consensus 270 A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i 349 (434)
T 4b4t_M 270 AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEF 349 (434)
T ss_dssp HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEEC
T ss_pred HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEe
Confidence 3333489999999864310 001111111 12234456667754332 2222 22457888
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 312 DLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 312 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
..-+.++-.++|+.+........+.. ..+|++.+.|.-
T Consensus 350 ~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~s 387 (434)
T 4b4t_M 350 PLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEFN 387 (434)
T ss_dssp CCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSCC
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 88888888888877763322222111 356777887753
No 211
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.30 E-value=0.00015 Score=70.83 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=60.0
Q ss_pred HHHHHHHHhhcC---CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCc
Q 001897 162 KTLGKLMKLLDC---DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDV 238 (998)
Q Consensus 162 ~~~~~l~~~l~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 238 (998)
+.++.+.++..+ ..-..+.|+|++|+||||||+.+++..... ..+ .+++++ ..++...+........
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~-~~~~~~------~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK---KGI-RGYFFD------TKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH---SCC-CCCEEE------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH---cCC-eEEEEE------HHHHHHHHHHHhcCch
Confidence 344444444432 345789999999999999999999876421 111 123333 4444444443332111
Q ss_pred chhhhHHHHHHHHHHHHHcCCeEEEEEcccccc--cccc--cccCCCCC-CCCCcEEEEecCC
Q 001897 239 KMEESMQRLGIRLHERLLRESNFLLILDDVWET--IDLD--SLGVPQPE-DHGGSKIILTSRS 296 (998)
Q Consensus 239 ~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~--~l~~~l~~-~~~gs~iivTtR~ 296 (998)
. . .+.+.+. +.-+|||||++.. ..|. .+...+.. ...|..||+||..
T Consensus 91 ~-----~----~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 91 D-----T----KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp C-----S----HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred H-----H----HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0 0 1222232 2568999999742 2222 11111110 1246778888864
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0092 Score=65.82 Aligned_cols=151 Identities=18% Similarity=0.190 Sum_probs=77.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+-|.++|++|.|||++|+++++..... .+.+..++-.+ .....+ +...+.+...
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~--------~~~v~~~~l~~---------------~~~Ge~-e~~ir~lF~~ 260 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAA--------FIRVNGSEFVH---------------KYLGEG-PRMVRDVFRL 260 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCE--------EEEEEGGGTCC---------------SSCSHH-HHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC--------eEEEecchhhc---------------cccchh-HHHHHHHHHH
Confidence 45679999999999999999999975321 23444433211 000111 2222333333
Q ss_pred HHcCCeEEEEEcccccccc----------------cccccCCCC--CCCCCcEEEEecCChHH-----HhhcCCCeEEEc
Q 001897 255 LLRESNFLLILDDVWETID----------------LDSLGVPQP--EDHGGSKIILTSRSLEV-----CMAMKTDVEVRV 311 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~iivTtR~~~v-----~~~~~~~~~~~l 311 (998)
......+++++|+++.... +..+...+. ....|..||.||...+. .+...-+..+++
T Consensus 261 A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~ 340 (428)
T 4b4t_K 261 ARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEF 340 (428)
T ss_dssp HHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEEC
T ss_pred HHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEc
Confidence 4444589999999864310 011110000 12334566767754322 111122346777
Q ss_pred cCCC-hHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 312 DLLN-DDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 312 ~~L~-~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
..+. .++-.++|..+.......++.. ...+++.+.|.-
T Consensus 341 p~lPd~~~R~~Il~~~~~~~~l~~~~d--l~~lA~~t~G~s 379 (428)
T 4b4t_K 341 PSLRDRRERRLIFGTIASKMSLAPEAD--LDSLIIRNDSLS 379 (428)
T ss_dssp CSSCCHHHHHHHHHHHHHSSCBCTTCC--HHHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCcccC--HHHHHHHCCCCC
Confidence 6564 4555667766653322212111 356777777753
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.17 E-value=0.0038 Score=76.00 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=90.3
Q ss_pred cccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhcccc-CCCCeEEE-EEeCCCCCHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSA-HRSGMVIW-ATVSKELNLRWVQAQIA 231 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-~~f~~~~w-v~~s~~~~~~~~~~~i~ 231 (998)
+....|+++++..+++.+......-+.|+|.+|+||||+|+.+++.+....+. ......++ ++++..
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 33455778889999998887777778999999999999999999876432211 11233332 221110
Q ss_pred HHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEccccccc--------c---cccccCCCCCCCCCcEEEEecCChHHH
Q 001897 232 ERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETI--------D---LDSLGVPQPEDHGGSKIILTSRSLEVC 300 (998)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--------~---~~~l~~~l~~~~~gs~iivTtR~~~v~ 300 (998)
+.. .......+.....+.+.+...++.+|++|++.... . ...+...+. ..+..+|.+|......
T Consensus 254 --~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 254 --LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFS 328 (758)
T ss_dssp ---CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHH
T ss_pred --hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHh
Confidence 000 00111223333344444444457899999997541 1 111222222 2345666666544332
Q ss_pred hhc-------CCCeEEEccCCChHHHHHHHHHhh
Q 001897 301 MAM-------KTDVEVRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 301 ~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 327 (998)
... ..-..+.+...+.++..+++....
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 111 111368899999999888887654
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.13 E-value=0.0032 Score=76.47 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=81.9
Q ss_pred cccccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCC-CCe-EEEEEeCCCCCHHHHHHHHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHR-SGM-VIWATVSKELNLRWVQAQIA 231 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~-f~~-~~wv~~s~~~~~~~~~~~i~ 231 (998)
+....|+++.+..++..+......-+.++|++|+|||++|+.+++.+....+-.. .+. .+.++. .
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------g 245 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------G 245 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------c
Confidence 3445678889999999887766667889999999999999999988643221111 111 122222 0
Q ss_pred HHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCCCcEEEEecCChHHHhh-------cC
Q 001897 232 ERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETIDLDSLGVPQPEDHGGSKIILTSRSLEVCMA-------MK 304 (998)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-------~~ 304 (998)
....+ ..+.....+.......++.+|++|. .......+...+. ....++|.||........ ..
T Consensus 246 ~~~~G------~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 246 TKYRG------EFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ccccc------hHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 00000 0111112223333334578999992 1111122332222 224566666654431110 01
Q ss_pred CCeEEEccCCChHHHHHHHHHhhC
Q 001897 305 TDVEVRVDLLNDDEAWQLFSQNAG 328 (998)
Q Consensus 305 ~~~~~~l~~L~~~~~~~lf~~~~~ 328 (998)
--..+.+...+.++..+++.....
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHH
Confidence 114689999999999999987663
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.11 E-value=0.0046 Score=69.52 Aligned_cols=172 Identities=15% Similarity=0.155 Sum_probs=91.7
Q ss_pred cccccchHHHHHHHHHhhcCC---------CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHH
Q 001897 154 IEHQTTASKTLGKLMKLLDCD---------EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLR 224 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 224 (998)
+.|.....+.+.+++..+... -.+-|.|+|++|+||||||+.+++.... . .+.+++++-...
T Consensus 18 i~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~-----~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 18 VGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV-----P---FFHISGSDFVEL- 88 (476)
T ss_dssp CCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC-----C---EEEEEGGGTTTC-
T ss_pred hCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----C---eeeCCHHHHHHH-
Confidence 344444445555665555321 2345889999999999999999986431 1 234444332110
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc----------------cccccCCCC--CCCC
Q 001897 225 WVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID----------------LDSLGVPQP--EDHG 286 (998)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~ 286 (998)
+. ... ......+..........+|+||+++.... +..+...+. ....
T Consensus 89 ---------~~-----g~~-~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 ---------FV-----GVG-AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp ---------CT-----THH-HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ---------Hh-----ccc-HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 00 001 11122233333334588999999965311 111111110 1123
Q ss_pred CcEEEEecCChHHHh-h-c---CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 287 GSKIILTSRSLEVCM-A-M---KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 287 gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
+..||.||...+... . . .-...+.+...+.++-.+++..++......++.. ...|++.+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCc
Confidence 556777776654322 1 1 1234788888888888888877774332222211 345777888876
No 216
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.10 E-value=0.008 Score=64.94 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=37.0
Q ss_pred eEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChHHHHHH
Q 001897 307 VEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPLAIITM 357 (998)
Q Consensus 307 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 357 (998)
..+.+++.+.++-.+++.+.+..... .-..+.+..|++++.|.|-.+..+
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHH
Confidence 46899999999999999888732211 223567889999999999765443
No 217
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.10 E-value=0.00042 Score=64.78 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-|.|+|.+|+|||++|+.+++.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999875
No 218
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.08 E-value=0.0017 Score=68.87 Aligned_cols=145 Identities=15% Similarity=0.086 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCcch
Q 001897 162 KTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK-ELNLRWVQAQIAERLNLDVKM 240 (998)
Q Consensus 162 ~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~ 240 (998)
+.++.+...+..++.+...++|+.|+||||+|+.+.+... .....+.+. .++..+. ...+.++ +++.+.+....
T Consensus 4 ~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~-~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p-- 78 (305)
T 2gno_A 4 DQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVE-KFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP-- 78 (305)
T ss_dssp CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHH-TSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC--
T ss_pred HHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCc-hhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc--
Confidence 3455666666666678999999999999999999987521 100123343 4555442 3333333 22333332110
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCCCcEEEEecCC-hHHHhhcCCCeEEEccCCChH
Q 001897 241 EESMQRLGIRLHERLLRESNFLLILDDVWETI--DLDSLGVPQPEDHGGSKIILTSRS-LEVCMAMKTDVEVRVDLLNDD 317 (998)
Q Consensus 241 ~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~~~~l~~L~~~ 317 (998)
..+++-++|+|+++... ..+.+...+-...+.+.+|++|.+ ..+....... .+++.+++++
T Consensus 79 ---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 79 ---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp ---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred ---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 01236789999998652 233333322222345666666543 3343333334 8999999999
Q ss_pred HHHHHHHHhh
Q 001897 318 EAWQLFSQNA 327 (998)
Q Consensus 318 ~~~~lf~~~~ 327 (998)
+..+.+.+..
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999888776
No 219
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.08 E-value=0.0096 Score=66.13 Aligned_cols=145 Identities=8% Similarity=0.147 Sum_probs=101.5
Q ss_pred cceEEEeecCCccccCCC-CCCCCcceEEEecCCC--CCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceE
Q 001897 514 SLKRVSFMNNSITKLPDC-KVHCPETLTLLLQGNF--PLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRAL 589 (998)
Q Consensus 514 ~l~~l~l~~~~~~~l~~~-~~~~~~l~~L~l~~~~--~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L 589 (998)
.++.+.+..+ ++.+... +..|.+|+.+.+..+. .+..+....|..+..|+.+.+..+ +..++. .+..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 3677777643 5566554 4469999999997763 367788888899999988877654 555554 57889999999
Q ss_pred eecCCCCCCCCc--cccCCCCCCeeeecCCCCcccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccC
Q 001897 590 LLRDCFYLEDLP--ALGGLTKLQDLDLSATSIRELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLS 665 (998)
Q Consensus 590 ~L~~~~~~~~lp--~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~ 665 (998)
.+..+ ...++ .+..+.+|+.+.+..+ +..+........+|..+.+... +..+....+..+.+|........
T Consensus 143 ~lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 143 TIPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCS
T ss_pred cccce--eeeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceeccccc
Confidence 99753 34444 5888999999999754 5556555444567888887654 34444455777888887765543
No 220
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.05 E-value=0.0042 Score=70.48 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=80.7
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
...+-|.|+|++|+|||++|+.+++... . ..+.++++ ++...+. .... .....+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~-----~---~fv~vn~~----------~l~~~~~-----g~~~-~~~~~~f~ 291 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETG-----A---FFFLINGP----------EIMSKLA-----GESE-SNLRKAFE 291 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCS-----S---EEEEEEHH----------HHHTSCT-----THHH-HHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhC-----C---CEEEEEch----------Hhhhhhc-----chhH-HHHHHHHH
Confidence 3456789999999999999999987631 1 12334431 1111111 1111 11222233
Q ss_pred HHHcCCeEEEEEcccccccc-------------cccccCCCC--CCCCCcEEEEecCChH-HHhh----cCCCeEEEccC
Q 001897 254 RLLRESNFLLILDDVWETID-------------LDSLGVPQP--EDHGGSKIILTSRSLE-VCMA----MKTDVEVRVDL 313 (998)
Q Consensus 254 ~l~~~~r~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~gs~iivTtR~~~-v~~~----~~~~~~~~l~~ 313 (998)
.....+..+|+||+++.... ...+...+. ....+..||.||.... +... ..-...+.+..
T Consensus 292 ~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~ 371 (489)
T 3hu3_A 292 EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371 (489)
T ss_dssp HHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCC
T ss_pred HHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCC
Confidence 33344578999999953210 011111110 1223456666776542 2111 12345789999
Q ss_pred CChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCC
Q 001897 314 LNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGL 350 (998)
Q Consensus 314 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 350 (998)
.+.++-.+++..++......... ...++++.+.|.
T Consensus 372 P~~~eR~~IL~~~~~~~~l~~~~--~l~~la~~t~g~ 406 (489)
T 3hu3_A 372 PDATGRLEILQIHTKNMKLADDV--DLEQVANETHGH 406 (489)
T ss_dssp CCHHHHHHHHHHHTTTSCBCTTC--CHHHHHHTCTTC
T ss_pred CCHHHHHHHHHHHHhcCCCcchh--hHHHHHHHccCC
Confidence 99999999999887543222111 134566677664
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.03 E-value=0.0061 Score=63.14 Aligned_cols=175 Identities=18% Similarity=0.142 Sum_probs=86.8
Q ss_pred cccccchHHHHHHHHHhhcC---------CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHH
Q 001897 154 IEHQTTASKTLGKLMKLLDC---------DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLR 224 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 224 (998)
+.|.....+.+.+++.++.. ...+-|.|+|++|+||||+|+.+++.... . .+.++.+.-.+
T Consensus 14 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~---~~~i~~~~~~~-- 83 (257)
T 1lv7_A 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-----P---FFTISGSDFVE-- 83 (257)
T ss_dssp SCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-----C---EEEECSCSSTT--
T ss_pred hcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-----C---EEEEeHHHHHH--
Confidence 34444444455555555432 12345889999999999999999886421 1 23343332111
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHcCCeEEEEEcccccccc----------------cccccCCCC--CCCC
Q 001897 225 WVQAQIAERLNLDVKMEESMQRLGIRLHERLLRESNFLLILDDVWETID----------------LDSLGVPQP--EDHG 286 (998)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~ 286 (998)
.... .... ....+.+........++++|+++.... ...+...+. ....
T Consensus 84 --------~~~~-----~~~~-~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 --------MFVG-----VGAS-RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp --------SCCC-----CCHH-HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred --------Hhhh-----hhHH-HHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 0000 0111 112222333333468999999854310 000100000 1123
Q ss_pred CcEEEEecCChH-HHhhc----CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccC-ChHHH
Q 001897 287 GSKIILTSRSLE-VCMAM----KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKG-LPLAI 354 (998)
Q Consensus 287 gs~iivTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai 354 (998)
+..||.||...+ +.... .-...+.+...+.++-.+++..+.......++. ....++..+.| .+--+
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl 221 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADL 221 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHH
Confidence 456676776443 21111 123577888888888888887776432221211 12346666666 44333
No 222
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.96 E-value=0.0024 Score=63.45 Aligned_cols=112 Identities=15% Similarity=0.115 Sum_probs=58.9
Q ss_pred HHHHHHHhhcCC----CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCc
Q 001897 163 TLGKLMKLLDCD----EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDV 238 (998)
Q Consensus 163 ~~~~l~~~l~~~----~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 238 (998)
.++.+.+++... ..+.+.|+|++|+||||||+.+++..... ...+++++++ ++...+.......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-----~~~~~~~~~~------~~~~~~~~~~~~~- 104 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-----NVSSLIVYVP------ELFRELKHSLQDQ- 104 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-----TCCEEEEEHH------HHHHHHHHC---C-
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEEhH------HHHHHHHHHhccc-
Confidence 444455554432 22789999999999999999999876422 2345666553 3444443322111
Q ss_pred chhhhHHHHHHHHHHHHHcCCeEEEEEcccccc--ccccc--ccC-CCCCC-CCCcEEEEecCC
Q 001897 239 KMEESMQRLGIRLHERLLRESNFLLILDDVWET--IDLDS--LGV-PQPED-HGGSKIILTSRS 296 (998)
Q Consensus 239 ~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~--l~~-~l~~~-~~gs~iivTtR~ 296 (998)
... .+...+.+ .-+|||||++.. ..|.. +.. .+... ..+.++|+||..
T Consensus 105 ----~~~----~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 ----TMN----EKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCH----HHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----hHH----HHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 111 12222332 239999999653 33321 111 11111 234568888863
No 223
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.93 E-value=0.014 Score=64.42 Aligned_cols=52 Identities=10% Similarity=0.160 Sum_probs=23.6
Q ss_pred ccceEEEeecCCccccCCC-CCCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEc
Q 001897 513 NSLKRVSFMNNSITKLPDC-KVHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNL 568 (998)
Q Consensus 513 ~~l~~l~l~~~~~~~l~~~-~~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l 568 (998)
.+++.+.+.. .++.++.. +..|.+|+.+.+..+ +..+....|.++ .|..+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~ 98 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTG 98 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEE
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEEC
Confidence 3455555532 34444433 233555555555432 444555555544 3444433
No 224
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.79 E-value=0.00083 Score=62.91 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=29.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK 219 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~ 219 (998)
.-..++|+|+.|+|||||++.++...... .+ .++++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA----GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT----TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc----CC-cEEEEcHHH
Confidence 45689999999999999999999876421 12 256666543
No 225
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.75 E-value=0.0091 Score=63.79 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...+.|+|++|+|||++|+.+++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998875
No 226
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.68 E-value=0.0016 Score=68.06 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=32.7
Q ss_pred CcccccchHHHHHHHHHhhcC---------CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 153 SIEHQTTASKTLGKLMKLLDC---------DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~l~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.++|.....+.+.+++..+.. ...+-|.|+|++|+|||++|+.+++...
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 344554445555555554331 1234478999999999999999998753
No 227
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.67 E-value=0.0083 Score=63.41 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688899999999999999999875
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.62 E-value=0.011 Score=70.39 Aligned_cols=152 Identities=14% Similarity=0.162 Sum_probs=83.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
..+-|.++|++|.|||+||+++++.... ..+.|+.+ ++.... .. ..+.....+.+.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~--------~~~~v~~~----------~l~sk~-----~g-ese~~lr~lF~~ 292 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGA--------FFFLINGP----------EIMSKL-----AG-ESESNLRKAFEE 292 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTC--------EEEEEEHH----------HHHSSC-----TT-HHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC--------eEEEEEhH----------Hhhccc-----ch-HHHHHHHHHHHH
Confidence 3568999999999999999999986421 12344432 111111 11 112233334444
Q ss_pred HHcCCeEEEEEcccccccc-------------cccccCCCC--CCCCCcEEEEecCC-hHHHhhc----CCCeEEEccCC
Q 001897 255 LLRESNFLLILDDVWETID-------------LDSLGVPQP--EDHGGSKIILTSRS-LEVCMAM----KTDVEVRVDLL 314 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~gs~iivTtR~-~~v~~~~----~~~~~~~l~~L 314 (998)
.......+|+||+++.... ...+...+. ....+..||.||.. ..+-..+ .-...+++..-
T Consensus 293 A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~P 372 (806)
T 3cf2_A 293 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372 (806)
T ss_dssp HTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCC
T ss_pred HHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCC
Confidence 4445589999999875411 001110000 01123345555543 3332222 23467899999
Q ss_pred ChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCChH
Q 001897 315 NDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLPL 352 (998)
Q Consensus 315 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 352 (998)
+.++-.++|..+........+. ....|++++.|.--
T Consensus 373 d~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 373 DATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVG 408 (806)
T ss_dssp CHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCCH
T ss_pred CHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCCH
Confidence 9999999998877432222221 14567888887643
No 229
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.55 E-value=0.0041 Score=66.58 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=28.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE 220 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~ 220 (998)
...+.++|++|+||||+|+.+++..... -...+.+.++..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~-----~~~~~~~~~~~~ 86 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDT-----EEAMIRIDMTEY 86 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSC-----GGGEEEEEGGGC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCC-----CcceEEeecccc
Confidence 3589999999999999999998875321 112455666543
No 230
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.31 E-value=0.024 Score=57.97 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=55.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhcc-ccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcc------------hhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDS-SAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVK------------MEE 242 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------~~~ 242 (998)
-.++.|+|++|+|||||++.++....... ....-..++|++....+....+. ++++.++.... ...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46999999999999999999987532110 00113468899887765655443 34445543321 001
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 001897 243 SMQRLGIRLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 243 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
........+.+.+...+.-++|+|.+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 11122233444454445778999998644
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.27 E-value=0.017 Score=66.64 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...++.++|++|+||||||+.++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998875
No 232
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.15 E-value=0.0037 Score=65.48 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=43.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEe--CCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATV--SKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
+++.|+|++|+||||||.+++.. .. ..++|+++ .+..+. .. .+.+.....+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~G-------~~VlyIs~~~eE~v~~----------~~------~~le~~l~~i~~~ 179 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-LG-------GKDKYATVRFGEPLSG----------YN------TDFNVFVDDIARA 179 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-HH-------TTSCCEEEEBSCSSTT----------CB------CCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-CC-------CCEEEEEecchhhhhh----------hh------cCHHHHHHHHHHH
Confidence 57789999999999999999875 21 12456666 322111 00 2334444455566
Q ss_pred HHcCCeEEEEEcccccc
Q 001897 255 LLRESNFLLILDDVWET 271 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~ 271 (998)
+.+. + ++|+|++...
T Consensus 180 l~~~-~-LLVIDsI~aL 194 (331)
T 2vhj_A 180 MLQH-R-VIVIDSLKNV 194 (331)
T ss_dssp HHHC-S-EEEEECCTTT
T ss_pred HhhC-C-EEEEeccccc
Confidence 6555 5 9999998654
No 233
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.10 E-value=0.032 Score=59.76 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=58.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhcc-ccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch------------hh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDS-SAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM------------EE 242 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~~ 242 (998)
-.++.|+|.+|+||||+|.+++....... ....-..++|++....++..++.+ +++.++.+... ..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46899999999999999999987542110 001124689999988877776653 45666543210 01
Q ss_pred hHHHHHHHHHHHHHc-CCeEEEEEcccccc
Q 001897 243 SMQRLGIRLHERLLR-ESNFLLILDDVWET 271 (998)
Q Consensus 243 ~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~ 271 (998)
........+...+.. .+--+||+|.+...
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 111233344444444 44678888987543
No 234
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.09 E-value=0.023 Score=61.07 Aligned_cols=86 Identities=21% Similarity=0.210 Sum_probs=55.0
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-----hhhHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-----EESMQRLGIR 250 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~ 250 (998)
-.++.|+|++|+||||||.+++...... -..++|++....++.. .+++++..... ..+.++....
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~-----gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM-----GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEI 130 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHH
Confidence 4699999999999999999998775431 1347889887777654 45555544221 1233333333
Q ss_pred HHHHHHcCCeEEEEEcccccc
Q 001897 251 LHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 251 l~~~l~~~~r~LlVlDdv~~~ 271 (998)
+.......+.-++|+|.+...
T Consensus 131 ~~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 131 VDELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHHHTSCCSEEEEECTTTC
T ss_pred HHHHhhhcCCCeEEehHhhhh
Confidence 333333344568899998654
No 235
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.07 E-value=0.0066 Score=63.25 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..|.|+|.+|+|||++|+.+++..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 567799999999999999998753
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.03 E-value=0.25 Score=54.77 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=23.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..++|.++|.+|+||||++..++..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987765
No 237
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.02 E-value=0.13 Score=56.73 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+|.++|.+|+||||++..++..++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987765
No 238
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.01 E-value=0.034 Score=61.26 Aligned_cols=124 Identities=15% Similarity=0.199 Sum_probs=72.8
Q ss_pred CCCCcceEEEecCCCCCCCCChhhhcCCCCccEEEcCCCCCCCCCh-hhhcccCCceEeecCCCCCCCCc--cccCCCCC
Q 001897 533 VHCPETLTLLLQGNFPLGRVPEKFLDGFPALRVLNLSGTRIHSLPL-SLLQLHNCRALLLRDCFYLEDLP--ALGGLTKL 609 (998)
Q Consensus 533 ~~~~~l~~L~l~~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp--~i~~l~~L 609 (998)
..+..+..+.+..+ +..+....|.++..|+.+.+..+ ++.+.. .+.++.+|+.+.+..+ +..++ .+..+.+|
T Consensus 214 ~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 214 SYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTC
T ss_pred ccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccccc
Confidence 34555555555432 34455555666677777776554 444433 4556666777766542 33444 46667777
Q ss_pred CeeeecCCCCcccChh-hhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcc
Q 001897 610 QDLDLSATSIRELPRG-MENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMT 663 (998)
Q Consensus 610 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~ 663 (998)
+.+.+.++.++.++.. +.++.+|+.+.+..+ +..+....+.++++|+.+.+.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 7777766666666543 566677777776542 455555556666666666553
No 239
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.00 E-value=0.031 Score=63.16 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=87.7
Q ss_pred CcccccchHHHHHHHHHhhcCC---------CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCH
Q 001897 153 SIEHQTTASKTLGKLMKLLDCD---------EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNL 223 (998)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~ 223 (998)
.+.+.......+.+++..+... -.+-|.|+|++|+||||||+.++..... ..+.++.+.-.+
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~--------~~i~i~g~~~~~- 102 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV--------PFITASGSDFVE- 102 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC--------CEEEEEGGGGTS-
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEehhHHHH-
Confidence 3444444455566666555331 1234899999999999999999986421 134444432110
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHc---CCeEEEEEcccccccc----------------cccccCCCCC-
Q 001897 224 RWVQAQIAERLNLDVKMEESMQRLGIRLHERLLR---ESNFLLILDDVWETID----------------LDSLGVPQPE- 283 (998)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~---~~r~LlVlDdv~~~~~----------------~~~l~~~l~~- 283 (998)
.. .. .....+...+.. ....++++|+++.... +..+...+..
T Consensus 103 -------------~~-~g----~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 -------------MF-VG----VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp -------------SC-TT----HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred -------------hh-hh----hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 00 00 011122222222 1247999999964310 0111111111
Q ss_pred -CCCCcEEEEecCChHHHh-hc----CCCeEEEccCCChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 284 -DHGGSKIILTSRSLEVCM-AM----KTDVEVRVDLLNDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 284 -~~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
...+..|+.||...++.. .. .-...+.+...+.++-.+++..++......++. ....|+..+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 123445666666655422 11 234578899889888888888776432211111 1345666676654
No 240
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.98 E-value=0.039 Score=59.59 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=57.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhcc-ccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcc------------hh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDS-SAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVK------------ME 241 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------~~ 241 (998)
.-.++.|+|.+|+||||+|.+++....... ....-..++|++....++...+.+ +++.++.+.. ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 346999999999999999999987532110 001234689999988877776653 4455554321 01
Q ss_pred hhHHHHHHHHHHHHHc--CCeEEEEEcccccc
Q 001897 242 ESMQRLGIRLHERLLR--ESNFLLILDDVWET 271 (998)
Q Consensus 242 ~~~~~~~~~l~~~l~~--~~r~LlVlDdv~~~ 271 (998)
.........+.+.+.. .+--+||+|.+...
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 1122233334444443 44668888887543
No 241
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.93 E-value=0.0085 Score=72.75 Aligned_cols=126 Identities=21% Similarity=0.217 Sum_probs=65.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLL 256 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 256 (998)
..+.++|++|+|||++|+.+++.... .-...+.++++...+.... . ...+.....
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~-----~~~~~i~i~~s~~~~~~~~----------------~----~~~l~~~~~ 576 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFG-----DEESMIRIDMSEYMEKHST----------------S----GGQLTEKVR 576 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHS-----CTTCEEEEEGGGGCSSCCC----------------C-------CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC-----CCcceEEEechhccccccc----------------c----cchhhHHHH
Confidence 37999999999999999999887521 1223456666543211000 0 001111222
Q ss_pred cCCeEEEEEcccccccc--cccccC-----CCC------CCCCCcEEEEecCC-----hHH----Hhhc------CCCeE
Q 001897 257 RESNFLLILDDVWETID--LDSLGV-----PQP------EDHGGSKIILTSRS-----LEV----CMAM------KTDVE 308 (998)
Q Consensus 257 ~~~r~LlVlDdv~~~~~--~~~l~~-----~l~------~~~~gs~iivTtR~-----~~v----~~~~------~~~~~ 308 (998)
....-+|+||+++.... ...+.. .+. ......+||.||.. ..+ ...+ .-+..
T Consensus 577 ~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~ 656 (758)
T 3pxi_A 577 RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEI 656 (758)
T ss_dssp HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEE
T ss_pred hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeE
Confidence 23345889999976521 111110 010 01235688888872 111 1111 12357
Q ss_pred EEccCCChHHHHHHHHHhh
Q 001897 309 VRVDLLNDDEAWQLFSQNA 327 (998)
Q Consensus 309 ~~l~~L~~~~~~~lf~~~~ 327 (998)
+.+.++++++-.+++....
T Consensus 657 i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 657 IVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EECC--CHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHH
Confidence 8888998888777765543
No 242
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.89 E-value=0.035 Score=59.49 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=56.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhcc---------ccCCC--CeEEEEEeCCCCCHHHHHHHHHHHhcCCcch---
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDS---------SAHRS--GMVIWATVSKELNLRWVQAQIAERLNLDVKM--- 240 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---------~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--- 240 (998)
.-.++.|+|.+|+||||+|.+++....-.. ..+.. ..++|++....++..++.+ +++.++.+...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 346999999999999999999876531110 00101 4689999988887777664 45556543210
Q ss_pred ---------hhhHHHHHHHHHHHHHc-CCeEEEEEccccc
Q 001897 241 ---------EESMQRLGIRLHERLLR-ESNFLLILDDVWE 270 (998)
Q Consensus 241 ---------~~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~ 270 (998)
.+........+.+.+.. .+--+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 01111233344444444 3356788887743
No 243
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.86 E-value=0.064 Score=54.14 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=37.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccC-CCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAH-RSGMVIWATVSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (998)
-.+++|+|++|+|||||++.++.......... ....++|+.-........+ ..+.+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i-~~~~~~~~ 84 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 84 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHH-HHHHHHcC
Confidence 46999999999999999999987533211111 2345788876654444332 33344443
No 244
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.83 E-value=0.028 Score=56.43 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=34.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQA 228 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 228 (998)
-.++.|+|.+|+||||+|+.++. .. -..++|++....++...+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~~------~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--LS------GKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HH------CSEEEEEESSCCCCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--Hc------CCcEEEEECCCCCCHHHHHH
Confidence 46899999999999999999977 21 23578888877666655543
No 245
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.78 E-value=0.12 Score=53.92 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=73.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHc
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLR 257 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 257 (998)
-|.|+|++|+||||||+.++..... ..+.+... ++ ..... . ........+.+....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~--------~~i~~~~~------~~----~~~~~-----~-~~~~~i~~~~~~~~~ 130 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARV--------PFITASGS------DF----VEMFV-----G-VGAARVRDLFETAKR 130 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC--------CEEEEEHH------HH----HHSTT-----T-HHHHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHcCC--------CEEEecHH------HH----HHHHh-----h-HHHHHHHHHHHHHHh
Confidence 3899999999999999999886421 12333321 11 11100 0 001111222333332
Q ss_pred CCeEEEEEccccccc------------c----cccccCCCCCCC--CCcEEEEecCChHH-----HhhcCCCeEEEccCC
Q 001897 258 ESNFLLILDDVWETI------------D----LDSLGVPQPEDH--GGSKIILTSRSLEV-----CMAMKTDVEVRVDLL 314 (998)
Q Consensus 258 ~~r~LlVlDdv~~~~------------~----~~~l~~~l~~~~--~gs~iivTtR~~~v-----~~~~~~~~~~~l~~L 314 (998)
....++++|+++... . ...+...+..+. ....++.||...++ .....-...+.+...
T Consensus 131 ~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p 210 (278)
T 1iy2_A 131 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210 (278)
T ss_dssp SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCC
T ss_pred cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCc
Confidence 336899999985321 0 011111111111 12334445554333 111134457889988
Q ss_pred ChHHHHHHHHHhhCCCCCCCCchHHHHHHHHHccCCh
Q 001897 315 NDDEAWQLFSQNAGVAASKDPIKPFAQAIARECKGLP 351 (998)
Q Consensus 315 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 351 (998)
+.++-.+++..++......++. ....++..+.|..
T Consensus 211 ~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 211 DVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 9888888887776432211111 1335666666654
No 246
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.74 E-value=0.056 Score=59.26 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=55.7
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhcc-ccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch------------hh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDS-SAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM------------EE 242 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~~ 242 (998)
-.++.|+|.+|+|||||+..++-...... ....-..++|++....+....+. .+++.++..... ..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 36999999999999999997753321111 11123468899887766665543 356666543210 01
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 001897 243 SMQRLGIRLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 243 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
.......++.+.+...+--+||+|.+...
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhhh
Confidence 11222333444444445678889987543
No 247
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.72 E-value=0.042 Score=57.23 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=56.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-----hhhHHHHHHHHH
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-----EESMQRLGIRLH 252 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 252 (998)
++-|.|++|+||||||.+++...... ..-..++||+....++.. .+++++.+.+. ..+.++....+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~---g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ---YPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH---CTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc---CCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 68999999999999999987765421 112468999998888764 36777765431 123333312233
Q ss_pred HHH---HcCCeEEEEEccccccc
Q 001897 253 ERL---LRESNFLLILDDVWETI 272 (998)
Q Consensus 253 ~~l---~~~~r~LlVlDdv~~~~ 272 (998)
+.+ ...+.-++|+|-+....
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHHhhccCceEEEEecccccc
Confidence 333 44557899999987653
No 248
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.57 E-value=0.043 Score=59.22 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=54.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-----hhhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-----EESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~ 249 (998)
.-+++.|+|.+|+||||||.++....... -..++|++....++.. .++.++.+... ..+.++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~-----g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~ 129 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA-----GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALE 129 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 34689999999999999999998765422 2358899988777653 34556543221 112333333
Q ss_pred HHHHHHHcCCeEEEEEcccccc
Q 001897 250 RLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
.+.......+.-+||+|.+...
T Consensus 130 ~~~~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 130 IADMLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHHHHTTTCCSEEEEECGGGC
T ss_pred HHHHHHhcCCCCEEEEcChHhh
Confidence 3332333333568999998654
No 249
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.56 E-value=0.12 Score=57.05 Aligned_cols=28 Identities=32% Similarity=0.292 Sum_probs=24.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
..++|.++|++|+||||++..++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3589999999999999999999877653
No 250
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.52 E-value=0.014 Score=60.11 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
.-.+++|+|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346999999999999999999874
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.44 E-value=0.048 Score=59.07 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=54.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcc-----hhhhHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVK-----MEESMQRLGIR 250 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~ 250 (998)
-.++.|.|.+|+||||||.++....... -..++|++....++.. .++.++.+.. ...+.++....
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~-----g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~ 143 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA-----GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEI 143 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC-----CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHH
Confidence 3588899999999999999987765321 2368999998877654 2455554322 11233344334
Q ss_pred HHHHHHcCCeEEEEEcccccc
Q 001897 251 LHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 251 l~~~l~~~~r~LlVlDdv~~~ 271 (998)
+........--+||+|.+...
T Consensus 144 l~~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHHHTTTCCSEEEEECTTTC
T ss_pred HHHHHhcCCCCEEEEeChHHh
Confidence 433333333558999998543
No 252
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.43 E-value=0.05 Score=58.72 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=53.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-----hhhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-----EESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~ 249 (998)
.-+++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++.+... ..+.+....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~-----g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~ 131 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALE 131 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHH
Confidence 34689999999999999999998765421 2358899998877744 24555543211 112233333
Q ss_pred HHHHHHHcCCeEEEEEcccccc
Q 001897 250 RLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
.+.......+--+||+|.+...
T Consensus 132 ~~~~l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 132 ICDALARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHHHHHTCCSEEEEECGGGC
T ss_pred HHHHHHhccCCCEEEEcCHHHh
Confidence 3322222333558999997543
No 253
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.37 E-value=0.054 Score=54.83 Aligned_cols=47 Identities=23% Similarity=0.152 Sum_probs=31.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQ 229 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 229 (998)
-.+++|+|++|+|||||++.++...... -..++|+.... ...++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~-----~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD-----GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH-----TCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC-----CCeEEEEEccc--CHHHHHHH
Confidence 3689999999999999999998665321 12466666543 34444443
No 254
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.34 E-value=0.014 Score=62.24 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=52.4
Q ss_pred HHHhhcC-CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------C
Q 001897 167 LMKLLDC-DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN-LRWVQAQIAERLNL-------D 237 (998)
Q Consensus 167 l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~ 237 (998)
+++.+.. ..-..++|+|..|+|||||++.+.+.+... ...+. ++++-+.+... +.++. +.+.. +
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~--~~~v~-~I~~lIGER~~Ev~~~~----~~~~~~vV~atad 236 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN--HPDCV-LMVLLIDERPEEVTEMQ----RLVKGEVVASTFD 236 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH--CTTSE-EEEEEESSCHHHHHHHH----TTCSSEEEEECTT
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc--CCCee-EEEEEecCChHHHHHHH----HHhCeEEEEeCCC
Confidence 4444432 345689999999999999999998765321 12233 34566665432 22222 22211 0
Q ss_pred cchh--hhHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 238 VKME--ESMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 238 ~~~~--~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
.+.. ......+..+.+++. .++.+||++||+...
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 0000 011112222333333 467999999998654
No 255
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.09 E-value=0.068 Score=59.14 Aligned_cols=91 Identities=19% Similarity=0.368 Sum_probs=52.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC----------Ccchh--hh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNL----------DVKME--ES 243 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~----------~~~~~--~~ 243 (998)
..++|+|..|+|||||++.+....... .-+.++++-+.+.. ...++..++.+.-.. ..... ..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~----~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~ 227 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE----HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMR 227 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH----TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc----cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHH
Confidence 468999999999999999998765422 22445666666543 344555544332000 00000 00
Q ss_pred HHHHHHHHHHHHH--cCCeEEEEEcccccc
Q 001897 244 MQRLGIRLHERLL--RESNFLLILDDVWET 271 (998)
Q Consensus 244 ~~~~~~~l~~~l~--~~~r~LlVlDdv~~~ 271 (998)
.......+.+++. .++++|+++||+...
T Consensus 228 ~~~~~ltiAEyFrd~~G~~VLl~~D~itR~ 257 (473)
T 1sky_E 228 VALTGLTMAEYFRDEQGQDGLLFIDNIFRF 257 (473)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1112224455554 367999999998543
No 256
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.07 E-value=0.054 Score=56.36 Aligned_cols=126 Identities=17% Similarity=0.121 Sum_probs=65.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHc
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERLLR 257 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 257 (998)
-+.++|++|.||||||+.++..... ..+.+..+.-.+. .... .......+.+....
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~--------~~i~i~g~~l~~~---------------~~~~-~~~~i~~vf~~a~~ 101 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGL--------NFISVKGPELLNM---------------YVGE-SERAVRQVFQRAKN 101 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC--------EEEEEETTTTCSS---------------TTHH-HHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCC--------CEEEEEcHHHHhh---------------hhhH-HHHHHHHHHHHHHh
Confidence 3999999999999999999886421 2344543322110 0000 01111222222222
Q ss_pred CCeEEEEEccccccccc-------------ccccCCCCC--CCCCcEEEEecCChHHHh---h--cCCCeEEEccCCChH
Q 001897 258 ESNFLLILDDVWETIDL-------------DSLGVPQPE--DHGGSKIILTSRSLEVCM---A--MKTDVEVRVDLLNDD 317 (998)
Q Consensus 258 ~~r~LlVlDdv~~~~~~-------------~~l~~~l~~--~~~gs~iivTtR~~~v~~---~--~~~~~~~~l~~L~~~ 317 (998)
....++++|+++..... ..+...+.. .....-++.+|...++.. . ..-...+.+...+.+
T Consensus 102 ~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~ 181 (274)
T 2x8a_A 102 SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181 (274)
T ss_dssp TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHH
T ss_pred cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHH
Confidence 34789999998753110 000000111 112334555665544422 1 133567788888888
Q ss_pred HHHHHHHHhh
Q 001897 318 EAWQLFSQNA 327 (998)
Q Consensus 318 ~~~~lf~~~~ 327 (998)
+-.++|....
T Consensus 182 ~r~~il~~~~ 191 (274)
T 2x8a_A 182 DRLAILKTIT 191 (274)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888887766
No 257
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.05 E-value=0.54 Score=49.22 Aligned_cols=88 Identities=22% Similarity=0.174 Sum_probs=48.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCcch---hhhHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDVKM---EESMQRLGIRL 251 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l 251 (998)
..+|+++|.+|+||||++..++..+... -..+.++...... ...+.++...+..+.+.-. ..+........
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-----g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~ 172 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-----GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG 172 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-----TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHH
Confidence 5799999999999999999998766432 1235566554322 2223334445555543211 12333333344
Q ss_pred HHHHHcCCeEEEEEccc
Q 001897 252 HERLLRESNFLLILDDV 268 (998)
Q Consensus 252 ~~~l~~~~r~LlVlDdv 268 (998)
.+.+....-=++|+|-.
T Consensus 173 l~~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 173 VEKFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHhCCCCEEEEeCC
Confidence 44443221226777754
No 258
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.04 E-value=0.6 Score=51.39 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=35.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHH--HHHHHHHhcCC
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWV--QAQIAERLNLD 237 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~--~~~i~~~l~~~ 237 (998)
...+|+|+|.+|+||||++..++..+... -..+..+.. +.+..... ++...+..+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-----g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-----GRRPLLVAA-DTQRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEEEC-CSSCHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEeec-cccCchhHHHHHHhcccCCcc
Confidence 35789999999999999999998876532 123444554 44444332 33444555543
No 259
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.99 E-value=0.27 Score=55.10 Aligned_cols=63 Identities=13% Similarity=0.003 Sum_probs=41.8
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001897 163 TLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAER 233 (998)
Q Consensus 163 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 233 (998)
.+++++.-+. .-.++.|.|.+|+||||+|..++...... .-..++|++.. .+..++...++..
T Consensus 189 ~LD~~lgGl~--~G~l~ii~G~pg~GKT~lal~ia~~~a~~----~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 189 ELDQLIGTLG--PGSLNIIAARPAMGKTAFALTIAQNAALK----EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp HHHHHHCCCC--TTCEEEEEECTTSCHHHHHHHHHHHHHHT----TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred hhhhhcCCcC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 4566653232 23688999999999999999998765421 11247777664 4566777666543
No 260
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.96 E-value=0.36 Score=54.26 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 001897 163 TLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIA 231 (998)
Q Consensus 163 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 231 (998)
.++++..-+. .-.++.|.|.+|+||||+|..++...... .-..++|++... +..++...++
T Consensus 192 ~LD~~~gGl~--~G~liiI~G~pG~GKTtl~l~ia~~~~~~----~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 192 ELDRMTSGFQ--RSDLIIVAARPSVGKTAFALNIAQNVATK----TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp HHHHHHSSBC--TTCEEEEECCTTSCHHHHHHHHHHHHHHH----SSCCEEEEESSS--CHHHHHHHHH
T ss_pred HHHhhcCCCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEEECCC--CHHHHHHHHH
Confidence 4566653232 33689999999999999999998876431 112477776543 4566666654
No 261
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.90 E-value=0.77 Score=48.75 Aligned_cols=58 Identities=26% Similarity=0.243 Sum_probs=36.8
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcC
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK-ELNLRWVQAQIAERLNL 236 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 236 (998)
....+++|+|+.|+||||+++.++..++.. . ..+.++...- .....+-++...+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~----~-g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH----G-FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT----T-CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc----C-CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 456899999999999999999998876532 1 1244443322 12334444555566553
No 262
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.89 E-value=0.14 Score=55.22 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCC-CCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001897 163 TLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHR-SGMVIWATVSKELNLRWVQAQIAERLN 235 (998)
Q Consensus 163 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~ 235 (998)
.++.++.. .=..-.++.|+|++|+|||||++.++.........+. -..++|++....+....+ ..+++..+
T Consensus 119 ~LD~lL~g-gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~ 190 (349)
T 1pzn_A 119 SLDKLLGG-GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 190 (349)
T ss_dssp HHHHHHTS-SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTT
T ss_pred HHHHHhcC-CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcC
Confidence 45555431 1124579999999999999999999876421111111 124589988766544443 33444443
No 263
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.82 E-value=0.17 Score=61.19 Aligned_cols=130 Identities=13% Similarity=0.139 Sum_probs=68.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHER 254 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (998)
....|.|+|++|+||||||+.++..... . .+.+..+. +. + .. .. ........+.+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~-----~---~i~v~~~~----------l~---~-~~-~g-~~~~~l~~vf~~ 292 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGA-----F---FFLINGPE----------IM---S-KL-AG-ESESNLRKAFEE 292 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTC-----E---EEEEEHHH----------HS---S-SS-TT-HHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCC-----c---EEEEEchH----------hh---h-hh-hh-hHHHHHHHHHHH
Confidence 3467999999999999999999875321 1 23343211 10 0 00 01 111122222232
Q ss_pred HHcCCeEEEEEcccccccc----------------cccccCCCCCCCCCcEEEEecCCh-HHHhhc----CCCeEEEccC
Q 001897 255 LLRESNFLLILDDVWETID----------------LDSLGVPQPEDHGGSKIILTSRSL-EVCMAM----KTDVEVRVDL 313 (998)
Q Consensus 255 l~~~~r~LlVlDdv~~~~~----------------~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~----~~~~~~~l~~ 313 (998)
.......++++|+++.... +-.+...+. ...+..+|.||... .+.... .-...+.+..
T Consensus 293 a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~ 371 (806)
T 1ypw_A 293 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371 (806)
T ss_dssp HHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCC
T ss_pred HHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEecccCCchhcCHHHhcccccccccccCC
Confidence 3233478999999954311 001111111 12244566666543 222111 1235678888
Q ss_pred CChHHHHHHHHHhhCC
Q 001897 314 LNDDEAWQLFSQNAGV 329 (998)
Q Consensus 314 L~~~~~~~lf~~~~~~ 329 (998)
.+.++-.+++...+..
T Consensus 372 p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 372 PDATGRLEILQIHTKN 387 (806)
T ss_dssp CCHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 8899999998877643
No 264
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.76 E-value=0.029 Score=55.80 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=30.1
Q ss_pred HHHHHHHhhcC--CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 163 TLGKLMKLLDC--DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 163 ~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.+++|.+.+.. ..-.+|+|+|+.|.|||||++.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44555555543 4567999999999999999999988764
No 265
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.74 E-value=0.03 Score=55.27 Aligned_cols=40 Identities=33% Similarity=0.376 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcC---CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 162 KTLGKLMKLLDC---DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 162 ~~~~~l~~~l~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+.++++.+.+.. ....+|+|.|..|+||||+++.+...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344555554432 4567999999999999999999987653
No 266
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.71 E-value=0.048 Score=66.18 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+.++|++|+|||++|+.+++..
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999998865
No 267
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.62 E-value=0.15 Score=56.16 Aligned_cols=93 Identities=23% Similarity=0.395 Sum_probs=59.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCC------c------chh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLD------V------KME 241 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~------~~~ 241 (998)
+-..++|+|..|+|||+|++.+.+.+.. .+-+.++++-+.+.. .+.++.+++.+.=..+ . ..+
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~----~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d 227 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAK----AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMN 227 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTT----TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTT
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHh----hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCC
Confidence 4467999999999999999999886532 234667788777654 3566777766542221 0 001
Q ss_pred h------hHHHHHHHHHHHHHc--CCeEEEEEcccccc
Q 001897 242 E------SMQRLGIRLHERLLR--ESNFLLILDDVWET 271 (998)
Q Consensus 242 ~------~~~~~~~~l~~~l~~--~~r~LlVlDdv~~~ 271 (998)
. .....+..+.+++.. ++.+|+++||+...
T Consensus 228 ~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 228 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1 112233445566654 67999999998543
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.52 E-value=0.021 Score=54.77 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+|.|.|+.|+||||+|+.+...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 269
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.43 E-value=0.32 Score=52.43 Aligned_cols=157 Identities=10% Similarity=-0.051 Sum_probs=93.1
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHE 253 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 253 (998)
.-.++..++|..|.||++.|+.+.+.+... .|+....+.+....++.++...+.. .
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~ 71 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ----GFEEHHTFSIDPNTDWNAIFSLCQA--------------------M 71 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH----TCCEEEEEECCTTCCHHHHHHHHHH--------------------H
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC----CCCeeEEEEecCCCCHHHHHHHhcC--------------------c
Confidence 445789999999999999999998865421 2332222233333344333322110 1
Q ss_pred HHHcCCeEEEEEccccc-c--cccccccCCCCCCCCCcEEEEecCC-------hHHHhh-cCCCeEEEccCCChHHHHHH
Q 001897 254 RLLRESNFLLILDDVWE-T--IDLDSLGVPQPEDHGGSKIILTSRS-------LEVCMA-MKTDVEVRVDLLNDDEAWQL 322 (998)
Q Consensus 254 ~l~~~~r~LlVlDdv~~-~--~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~-~~~~~~~~l~~L~~~~~~~l 322 (998)
-+.+ ++-++|+|+++. . ..++.+...+..-.+++.+|++|.. ..+... ......++..+++.++....
T Consensus 72 plf~-~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 72 SLFA-SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRW 150 (343)
T ss_dssp HHCC-SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHH
T ss_pred CCcc-CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHH
Confidence 1223 477888999866 3 3344443333222346666665532 234433 34456899999999998888
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHccCChHHHHH
Q 001897 323 FSQNAGVAASKDPIKPFAQAIARECKGLPLAIIT 356 (998)
Q Consensus 323 f~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 356 (998)
+.+.+..... .--.+.+..+++.++|.+.++..
T Consensus 151 l~~~~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 151 VAARAKQLNL-ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHTTC-EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHHhchHHHHHHH
Confidence 8777632221 11245677888999998877754
No 270
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.38 E-value=0.11 Score=54.63 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+|+|+|.+|+||||++..++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999987764
No 271
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.35 E-value=0.19 Score=55.63 Aligned_cols=93 Identities=20% Similarity=0.360 Sum_probs=61.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCC-------cc------h
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLD-------VK------M 240 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~------~ 240 (998)
+-..++|.|..|+|||+|+..+.+.+.. .+-+.++++-+.+.. ...++.+++.+.=..+ .. .
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~----~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~ 239 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAK----AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQM 239 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTT----TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECT
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHh----hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCC
Confidence 3467899999999999999999886532 335678888887765 4566777766532221 00 0
Q ss_pred h------hhHHHHHHHHHHHHHc--CCeEEEEEcccccc
Q 001897 241 E------ESMQRLGIRLHERLLR--ESNFLLILDDVWET 271 (998)
Q Consensus 241 ~------~~~~~~~~~l~~~l~~--~~r~LlVlDdv~~~ 271 (998)
+ ......+..+.+++.. ++.+|+++||+...
T Consensus 240 d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 240 NEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp TSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 0 1122334455677765 67999999998543
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.35 E-value=0.023 Score=54.86 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+|.|.|++|+||||+|+.+...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998763
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.28 E-value=0.021 Score=54.99 Aligned_cols=22 Identities=36% Similarity=0.441 Sum_probs=19.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.+|.|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 54
No 274
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.25 E-value=0.025 Score=55.78 Aligned_cols=26 Identities=42% Similarity=0.443 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..++|.|+|+.|+||||+|+.+...+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998764
No 275
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.21 E-value=0.15 Score=51.95 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=32.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQ 229 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 229 (998)
-.++.|.|.+|+||||+|.+++...... -..++|++... ...++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~-----~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM-----GEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSS--CHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEccC--CHHHHHHH
Confidence 3689999999999999998887654321 23477777654 34444433
No 276
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.16 E-value=0.16 Score=54.02 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=42.6
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001897 163 TLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAER 233 (998)
Q Consensus 163 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 233 (998)
.+++++.-+ ..-.++.|.|.+|+||||+|..++.....+ + ..++|++.. .+..++...+...
T Consensus 57 ~LD~~lgGl--~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGY--KRRNFVLIAARPSMGKTAFALKQAKNMSDN---D--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSB--CTTCEEEEECCTTSSHHHHHHHHHHHHHTT---T--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred HHHhhcCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---C--CeEEEEECC--CCHHHHHHHHHHH
Confidence 455655322 233689999999999999999998765421 1 467787765 4667777776654
No 277
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.13 E-value=0.026 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+|+|+|++|+||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999764
No 278
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.06 E-value=0.063 Score=48.53 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=37.8
Q ss_pred eeeecCCCCc--ccChhhhcCcCCcEEeCCCCcccccccccccCCCCCccEEEcccCcc
Q 001897 611 DLDLSATSIR--ELPRGMENLSNLRRLNLSRTHYLKKIQAGIICRLSSLEILDMTLSDY 667 (998)
Q Consensus 611 ~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 667 (998)
.++.++++++ .+|..+. .+|++|+|++|. +..+|.+.+..+++|+.|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 5666666676 7775432 357777777776 6777777677777888888777765
No 279
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.03 E-value=0.028 Score=54.43 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998753
No 280
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.00 E-value=0.031 Score=54.32 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+.|.|+|+.|+||||+|+.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998764
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.96 E-value=0.031 Score=54.02 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999976
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.88 E-value=0.039 Score=54.47 Aligned_cols=28 Identities=39% Similarity=0.436 Sum_probs=24.7
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
....+|+|+|+.|.||||+|+.+...+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999988754
No 283
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.85 E-value=0.036 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
++|.|.|+.|+||||+|+.+...+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999988764
No 284
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.84 E-value=0.026 Score=54.12 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+|+|+|+.|+||||+++.+...+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998753
No 285
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.81 E-value=0.055 Score=54.49 Aligned_cols=36 Identities=33% Similarity=0.379 Sum_probs=27.9
Q ss_pred HHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 165 GKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 165 ~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334444445567899999999999999999998763
No 286
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.79 E-value=0.23 Score=52.06 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=47.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHH--HHHHHHHHhcCCcc---hhhhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRW--VQAQIAERLNLDVK---MEESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~--~~~~i~~~l~~~~~---~~~~~~~~~~ 249 (998)
...+++|+|.+|+||||++..++..+... -..+.++... ...... .+..+.+..+.+.- ...+...+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-----~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~ 170 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-----GRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 170 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-----TCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHH
Confidence 34789999999999999999998776532 1234555543 222222 12334455554322 1123333333
Q ss_pred HHHHHHH-cCCeEEEEEccc
Q 001897 250 RLHERLL-RESNFLLILDDV 268 (998)
Q Consensus 250 ~l~~~l~-~~~r~LlVlDdv 268 (998)
....... .+ .=++|+|-.
T Consensus 171 ~~l~~~~~~~-~D~viiDtp 189 (295)
T 1ls1_A 171 RVEEKARLEA-RDLILVDTA 189 (295)
T ss_dssp HHHHHHHHHT-CCEEEEECC
T ss_pred HHHHHHHhCC-CCEEEEeCC
Confidence 3333332 33 446778865
No 287
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.78 E-value=0.038 Score=54.56 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
....+|+|+|+.|+||||+++.+...+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 445799999999999999999998764
No 288
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.75 E-value=0.26 Score=52.45 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=41.8
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001897 163 TLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAER 233 (998)
Q Consensus 163 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 233 (998)
.+++++.-+. .-.++.|.|.+|+||||+|..++...... -..++|++. ..+..++...++..
T Consensus 35 ~LD~~~gGl~--~G~LiiIaG~pG~GKTt~al~ia~~~a~~-----g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 35 QLDNYTSGFN--KGSLVIIGARPSMGKTSLMMNMVLSALND-----DRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp HHHHHHCSBC--TTCEEEEEECTTSCHHHHHHHHHHHHHHT-----TCEEEEEES--SSCHHHHHHHHHHH
T ss_pred HHHHHhcCCC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeC--CCCHHHHHHHHHHH
Confidence 4566554332 23688999999999999999998775431 234667665 44667777776554
No 289
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.73 E-value=0.03 Score=55.41 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+|.|.|+.|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 290
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.72 E-value=0.043 Score=51.95 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..++++|+|..|+|||||+..+...++
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 467999999999999999999988764
No 291
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.65 E-value=0.08 Score=65.00 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=22.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+.|+|+.|+|||++|+.+++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998875
No 292
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.62 E-value=0.05 Score=54.59 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 164 LGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 164 ~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+.+...+.....++|+|+|.+|+|||||+..+....
T Consensus 18 ~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 18 AEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444444445578899999999999999999988764
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.62 E-value=0.047 Score=53.35 Aligned_cols=25 Identities=36% Similarity=0.260 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+|.|.|++|+||||+|+.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998764
No 294
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.62 E-value=0.031 Score=54.04 Aligned_cols=23 Identities=48% Similarity=0.543 Sum_probs=20.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
|.|.|+|+.|+|||||++.+..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999999875
No 295
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.59 E-value=0.26 Score=51.90 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=24.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
...+|+|+|++|+||||++..++..++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 4579999999999999999999887653
No 296
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.56 E-value=0.04 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999988654
No 297
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.55 E-value=0.042 Score=56.49 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++|.|+|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 578999999999999999998764
No 298
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.54 E-value=0.043 Score=52.85 Aligned_cols=24 Identities=50% Similarity=0.595 Sum_probs=21.4
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987653
No 299
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.52 E-value=0.038 Score=53.41 Aligned_cols=25 Identities=40% Similarity=0.461 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.++|.|+|++|+||||+|+.+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998764
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.51 E-value=0.045 Score=52.55 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.+|+|+|+.|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999999775
No 301
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.51 E-value=0.066 Score=56.04 Aligned_cols=28 Identities=25% Similarity=0.063 Sum_probs=24.6
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
....+|+|+|..|+||||||+.+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999987764
No 302
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.43 E-value=0.043 Score=54.23 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=21.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.|+|.|+.|+||||+|+.+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998865
No 303
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.41 E-value=0.045 Score=52.15 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...+|+|.|+.|+||||+|+.+...+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 304
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.40 E-value=0.044 Score=53.44 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 305
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.38 E-value=0.041 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 368999999999999999999875
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.35 E-value=0.039 Score=53.06 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+.|.|.|++|+||||+|+.+...+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998764
No 307
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.27 E-value=0.037 Score=53.85 Aligned_cols=24 Identities=46% Similarity=0.520 Sum_probs=21.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998764
No 308
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.26 E-value=0.06 Score=52.32 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=23.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+|.|.|++|+||||+++.+...+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999988764
No 309
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.23 E-value=0.054 Score=53.10 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...+|.|.|+.|+||||+|+.+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998754
No 310
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.19 E-value=0.051 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...+|+|+|+.|+|||||++.+...+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998754
No 311
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.17 E-value=0.055 Score=52.96 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+|+|.|++|+||||+|+.+...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998753
No 312
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.15 E-value=0.094 Score=55.77 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=25.9
Q ss_pred hcCCCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 171 LDCDEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 171 l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+..++...|.|+|++|+||||+++.++..+.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3455677899999999999999999988654
No 313
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.12 E-value=0.13 Score=46.42 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=22.6
Q ss_pred CccEEEcCCCCCCCCChh-hhcccCCceEeecCCC
Q 001897 562 ALRVLNLSGTRIHSLPLS-LLQLHNCRALLLRDCF 595 (998)
Q Consensus 562 ~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~ 595 (998)
+|++|+|++|.|+.+|.. +..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 466777777777766653 4566777777777664
No 314
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.12 E-value=0.049 Score=53.86 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.2
Q ss_pred eEEEEEeCCCChHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 315
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.12 E-value=0.059 Score=53.52 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...++|.|.|++|+||||.|+.+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999998864
No 316
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.08 E-value=0.057 Score=53.73 Aligned_cols=27 Identities=41% Similarity=0.379 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+|+|+|+.|+|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999987643
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.08 E-value=0.062 Score=52.13 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
....|+|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999875
No 318
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.06 E-value=0.084 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
-+.|+|++|+||||||+.++...
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999864
No 319
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.06 E-value=0.043 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++|.|.|++|+||||+|+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998764
No 320
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.03 E-value=0.064 Score=52.97 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
....+|+|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999875
No 321
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.02 E-value=0.061 Score=53.06 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
.+..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999876
No 322
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.02 E-value=0.047 Score=54.03 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.++|.|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 323
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.01 E-value=0.057 Score=53.07 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+|+|.|+.|+||||+|+.+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998764
No 324
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.00 E-value=0.055 Score=54.57 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=21.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+|+|+|+.|+||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999997753
No 325
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.99 E-value=0.058 Score=55.21 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+|+|+|+.|+||||+++.+...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999998654
No 326
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.97 E-value=0.06 Score=52.25 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..|.|.|+.|+||||+|+.+...+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998753
No 327
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.92 E-value=0.63 Score=52.47 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..++|+|+|.+|+||||++..+...+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999987664
No 328
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.89 E-value=0.046 Score=53.82 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++++|+|+.|+|||||++.+...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999997754
No 329
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.87 E-value=0.054 Score=53.63 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999997753
No 330
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.87 E-value=0.027 Score=52.14 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=19.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-|.|+|.+|+|||++|+.+++.
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 34779999999999999998763
No 331
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.86 E-value=0.049 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=19.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLN 197 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~ 197 (998)
.-.+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999643
No 332
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.80 E-value=0.064 Score=53.32 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.6
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.+|.|.|+.|+||||+|+.+...+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999988754
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.79 E-value=0.052 Score=51.93 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++|.|.|+.|+||||+|+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 334
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.78 E-value=0.063 Score=52.29 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998753
No 335
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.77 E-value=0.069 Score=52.12 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+|+|.|+.|+||||+|+.+...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998753
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.74 E-value=0.067 Score=53.03 Aligned_cols=25 Identities=48% Similarity=0.553 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999764
No 337
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.74 E-value=0.13 Score=49.65 Aligned_cols=117 Identities=16% Similarity=0.060 Sum_probs=58.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC---CCCHHHHHHHHHH---H----hcCCcch-h---
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK---ELNLRWVQAQIAE---R----LNLDVKM-E--- 241 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~---~----l~~~~~~-~--- 241 (998)
-..|-|++..|.||||+|-...-+... ..+ .+.++.... ..+...+++.+.- . +...... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g----~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG----HGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH----TTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH----CCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHH
Confidence 356777777779999999888776432 222 344554333 2233344443310 0 0000110 0
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEEEcccccc-----cccccccCCCCCCCCCcEEEEecCCh
Q 001897 242 ESMQRLGIRLHERLLRESNFLLILDDVWET-----IDLDSLGVPQPEDHGGSKIILTSRSL 297 (998)
Q Consensus 242 ~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~ 297 (998)
...........+.+.+++-=|||||++-.. ...+++...+...-...-||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 111222233444444554459999998443 22222222222233456799999974
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.63 E-value=0.07 Score=55.07 Aligned_cols=26 Identities=50% Similarity=0.667 Sum_probs=22.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988643
No 339
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.60 E-value=0.069 Score=50.15 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=23.7
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999998865
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.60 E-value=0.062 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 341
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.60 E-value=0.069 Score=52.23 Aligned_cols=24 Identities=46% Similarity=0.565 Sum_probs=21.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+|+|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988653
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.58 E-value=0.07 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=20.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.|.|.|+.|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 343
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.57 E-value=0.079 Score=52.20 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...+|.|.|++|+||||+|+.+...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998764
No 344
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.50 E-value=0.063 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998753
No 345
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.47 E-value=0.076 Score=54.54 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
....+|+|.|+.|+||||+|+.+...+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
No 346
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.44 E-value=0.25 Score=54.20 Aligned_cols=94 Identities=12% Similarity=0.192 Sum_probs=54.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCc-------chh-----h
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDV-------KME-----E 242 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~-----~ 242 (998)
-..++|.|..|+|||+|+.++.+...... .+.-..++++-+.+.. .+.++.+++.+.=..+. ... .
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~-d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLD-SSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSS-CSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhcc-CCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 34578999999999999999887632100 0011156666666543 45566666544311110 000 1
Q ss_pred hHHHHHHHHHHHHHc--CCeEEEEEccccc
Q 001897 243 SMQRLGIRLHERLLR--ESNFLLILDDVWE 270 (998)
Q Consensus 243 ~~~~~~~~l~~~l~~--~~r~LlVlDdv~~ 270 (998)
-....+..+.+++.. ++.+|+++||+..
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 122233456677763 6899999999864
No 347
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.42 E-value=0.078 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...|.|.|++|+||||+|+.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998764
No 348
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.30 E-value=0.089 Score=55.44 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
...+|+|+|++|+||||+++.++..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999877653
No 349
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.30 E-value=0.086 Score=52.38 Aligned_cols=26 Identities=38% Similarity=0.270 Sum_probs=23.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..+|+|.|+.|+||||+|+.+...+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988654
No 350
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.29 E-value=0.048 Score=54.35 Aligned_cols=25 Identities=40% Similarity=0.605 Sum_probs=22.2
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
++|+|.|+.|+||||+|+.+...+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999988754
No 351
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.28 E-value=0.066 Score=51.01 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=22.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
.++++|+|..|+|||||++.+...+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 368999999999999999999876543
No 352
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.27 E-value=0.081 Score=56.01 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=24.5
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
....+|+|+|+.|+|||||++.+..-+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4567999999999999999999988664
No 353
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.23 E-value=0.086 Score=53.86 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
....+|+|.|+.|+|||||++.+...+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999997754
No 354
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.21 E-value=0.12 Score=54.20 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
...+|.|.|++|+||||+|+.+...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.21 E-value=0.089 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..+|+|.|+.|+||||+|+.+...+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988754
No 356
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.20 E-value=0.057 Score=52.25 Aligned_cols=25 Identities=36% Similarity=0.317 Sum_probs=18.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+|.|.|+.|+||||+|+.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999998753
No 357
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.19 E-value=0.087 Score=51.30 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
...+|+|.|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999764
No 358
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.16 E-value=0.077 Score=54.45 Aligned_cols=26 Identities=38% Similarity=0.383 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...+|+|+|+.|+||||+++.+...+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999998653
No 359
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.12 E-value=0.081 Score=56.05 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=30.2
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCC
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSK 219 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~ 219 (998)
+..+||+|.|-|||||||.+-.+.--+... -..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~-----GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-----GKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC-----CCeEEEEecCC
Confidence 467999999999999999998887665431 12366677653
No 360
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.11 E-value=0.08 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
...|.|.|+.|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999875
No 361
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.09 E-value=0.066 Score=53.56 Aligned_cols=25 Identities=44% Similarity=0.595 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 362
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.08 E-value=0.25 Score=54.48 Aligned_cols=95 Identities=13% Similarity=0.200 Sum_probs=55.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCc--------ch----h
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKEL-NLRWVQAQIAERLNLDV--------KM----E 241 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~----~ 241 (998)
+-..++|.|..|+|||+|+..+++...... ...-+.++++-+.+.. .+.++.+++...=..+. +. .
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~-~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPG-SESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTT-CSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcc-CCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 345678899999999999999988632100 0111356667666543 45566666654311110 00 0
Q ss_pred hhHHHHHHHHHHHHH--cCCeEEEEEccccc
Q 001897 242 ESMQRLGIRLHERLL--RESNFLLILDDVWE 270 (998)
Q Consensus 242 ~~~~~~~~~l~~~l~--~~~r~LlVlDdv~~ 270 (998)
.-....+..+.+++. .++.+|+++||+..
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 112223344556665 46799999999754
No 363
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.04 E-value=0.076 Score=51.57 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=22.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.+++|+|+.|+|||||++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988764
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.01 E-value=0.085 Score=52.94 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...|.|.|+.|+||||+|+.+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998764
No 365
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.95 E-value=0.084 Score=52.71 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
-.+++|+|+.|+|||||++.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998764
No 366
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.93 E-value=0.092 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.|+|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997764
No 367
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.89 E-value=0.13 Score=54.28 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+|+|.|+.|+||||+|+.+...+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999876543
No 368
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.89 E-value=0.14 Score=57.77 Aligned_cols=48 Identities=25% Similarity=0.341 Sum_probs=33.0
Q ss_pred cccccchHHHHHHHHHhhcCCC--ceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 154 IEHQTTASKTLGKLMKLLDCDE--IRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~--~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
++|+....+.+..+++.+.... .+-+.++|++|+|||++|+.+++...
T Consensus 39 iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 39 LVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4444434444445555554432 35789999999999999999998753
No 369
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.88 E-value=0.11 Score=54.64 Aligned_cols=28 Identities=39% Similarity=0.394 Sum_probs=24.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
...+++|+|+.|+||||+++.++..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3479999999999999999999887653
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.84 E-value=0.097 Score=51.27 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.|+|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988763
No 371
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.75 E-value=0.055 Score=57.71 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=27.9
Q ss_pred HHHHhhcC-CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 166 KLMKLLDC-DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 166 ~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
++++.+.. ..-..++|+|..|+|||+|++.+.+...
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 45555543 3456889999999999999999988654
No 372
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.71 E-value=0.52 Score=47.06 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
-..|.|.|+.|+||||+++.+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999988753
No 373
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.65 E-value=0.11 Score=49.51 Aligned_cols=27 Identities=37% Similarity=0.385 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..++++|+|+.|+|||||++.+...+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 367899999999999999999987654
No 374
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.61 E-value=0.11 Score=51.59 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=24.1
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
....+|.|.|+.|+||||+|+.+...+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988654
No 375
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.58 E-value=0.32 Score=63.53 Aligned_cols=98 Identities=16% Similarity=0.156 Sum_probs=61.2
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcc---
Q 001897 163 TLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVK--- 239 (998)
Q Consensus 163 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--- 239 (998)
.++.++.+-.=..-++|.|+|++|+|||+||.++...... .=..++|+++...++... ++.++.+..
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-----~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~ 1483 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLL 1483 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCE
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEEcccccCHHH-----HHHcCCCchhce
Confidence 3555544112235679999999999999999999776432 223578898888777666 445553211
Q ss_pred --hhhhHHHHHHHHHHHHHcCCeEEEEEccccc
Q 001897 240 --MEESMQRLGIRLHERLLRESNFLLILDDVWE 270 (998)
Q Consensus 240 --~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~ 270 (998)
.....+.....+.+.....+--+||+|.+..
T Consensus 1484 v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~a 1516 (2050)
T 3cmu_A 1484 CSQPDTGEQALEICDALARSGAVDVIVVDSVAA 1516 (2050)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred eecCChHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 0112233444444444455567999999853
No 376
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.56 E-value=0.097 Score=52.23 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHH
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999775
No 377
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.55 E-value=0.12 Score=52.71 Aligned_cols=27 Identities=30% Similarity=0.197 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
....+|.|.|++|+||||+|+.+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998753
No 378
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.52 E-value=0.1 Score=52.97 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.. .+++|+|+.|.|||||++.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 89999999999999999998764
No 379
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.52 E-value=0.13 Score=49.88 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=22.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..+.|+|++|+||||+|..+++.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988764
No 380
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.51 E-value=0.11 Score=55.25 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=22.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+|+|.|+.|+||||||+.++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998864
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.50 E-value=0.12 Score=49.77 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
-.+|+|.|+.|+||||+++.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999988653
No 382
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.49 E-value=0.4 Score=53.59 Aligned_cols=90 Identities=20% Similarity=0.185 Sum_probs=54.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC-HHHHHHHHHH----HhcCC-----------c
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN-LRWVQAQIAE----RLNLD-----------V 238 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~----~l~~~-----------~ 238 (998)
+-..++|.|..|+|||+|++++.+. .+-+.++++-+.+..+ +.++.+++-+ ..+.. .
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~-------~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~ts 298 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKW-------SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTS 298 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHH-------SSCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCT
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhc-------cCCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECC
Confidence 4467899999999999999998764 2345788888887654 4555555422 11100 0
Q ss_pred ch----hhhHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 239 KM----EESMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 239 ~~----~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
+. .......+..+.+++. .++.+||++||+...
T Consensus 299 d~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~ 336 (588)
T 3mfy_A 299 NMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRW 336 (588)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHH
Confidence 00 0011122333445554 357999999998643
No 383
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.47 E-value=0.11 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+|.|.|++|+||||.|+.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998864
No 384
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.45 E-value=0.09 Score=57.04 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=28.5
Q ss_pred ccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 157 QTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 157 ~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..|.+..+..+..........-|.|+|++|+|||++|+.+++..
T Consensus 26 i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 26 IVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp SCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred ccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 33444433333333322223348999999999999999998865
No 385
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.40 E-value=0.41 Score=52.49 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=53.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhcc--cc---CCCC-eEEEEEeCCCC-CHHHHHHHHHHHhcCC----------c
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDS--SA---HRSG-MVIWATVSKEL-NLRWVQAQIAERLNLD----------V 238 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~--~~---~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~----------~ 238 (998)
-..++|.|..|+|||+|+..+.+...... .. .+-+ .++++-+.+.. .+.++.+++.+.=..+ .
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 35678999999999999999887632100 00 0111 56666666543 3555655544321010 0
Q ss_pred c--hhhhHHHHHHHHHHHHHc--CCeEEEEEccccc
Q 001897 239 K--MEESMQRLGIRLHERLLR--ESNFLLILDDVWE 270 (998)
Q Consensus 239 ~--~~~~~~~~~~~l~~~l~~--~~r~LlVlDdv~~ 270 (998)
+ ...-....+..+.+++.. ++.+|+++||+..
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0 011122334456677763 6899999999854
No 386
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.39 E-value=0.1 Score=51.39 Aligned_cols=25 Identities=32% Similarity=0.215 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+|+|.|+.|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998753
No 387
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.27 E-value=0.12 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..+|+|.|+.|+||||+|+.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 388
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.24 E-value=0.1 Score=53.25 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
-.+|+|+|+.|+||||+++.+...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998764
No 389
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.22 E-value=0.13 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLN 197 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~ 197 (998)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999987
No 390
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.16 E-value=0.15 Score=54.98 Aligned_cols=28 Identities=39% Similarity=0.394 Sum_probs=24.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
...+|+|+|+.|+||||+++.++..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3479999999999999999999887653
No 391
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.05 E-value=0.099 Score=52.46 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.+++|+|+.|.|||||++.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998754
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.02 E-value=0.14 Score=51.16 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCChHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 393
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.00 E-value=0.13 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=21.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+|+|.|+.|+||||+|+.+...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 394
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.98 E-value=0.14 Score=51.22 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.5
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..|.|.|++|+||||+|+.+...+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 395
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.94 E-value=0.097 Score=50.78 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=38.2
Q ss_pred cCCCCccEEEcCCC-CCC-----CCChhhhcccCCceEeecCCCCCCC----Cc-cccCCCCCCeeeecCCCCc-----c
Q 001897 558 DGFPALRVLNLSGT-RIH-----SLPLSLLQLHNCRALLLRDCFYLED----LP-ALGGLTKLQDLDLSATSIR-----E 621 (998)
Q Consensus 558 ~~l~~Lr~L~l~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~~~~~----lp-~i~~l~~L~~L~l~~~~l~-----~ 621 (998)
..-+.|+.|+|+++ .|. .+-..+..-..|+.|+|++|..... +. .+..-+.|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44456666777664 443 1223334444555555555542211 11 1333445566666655554 2
Q ss_pred cChhhhcCcCCcEEeCCC
Q 001897 622 LPRGMENLSNLRRLNLSR 639 (998)
Q Consensus 622 lp~~i~~L~~L~~L~l~~ 639 (998)
+-..+..-+.|++|+|++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 222233334455555544
No 396
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.93 E-value=0.08 Score=53.52 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=16.4
Q ss_pred ceEEEEEeCCCChHHHHHHHHH-HH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLN-NI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~-~~ 199 (998)
-.+++|+|+.|+|||||++.+. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998 54
No 397
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.93 E-value=0.084 Score=52.63 Aligned_cols=111 Identities=14% Similarity=0.002 Sum_probs=57.5
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch--hhhHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM--EESMQRLGIRLHE 253 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~ 253 (998)
-.++.|+|..|.||||++..+.++.... .. .++.+...... + -..+|++.++..... .....+....+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~----g~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA----DV-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT----TC-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc----CC-EEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 4688999999999999999998876432 12 23444333221 1 122445555543221 1112222222322
Q ss_pred HHHcCCeEEEEEcccccc--cccccccCCCCCCCCCcEEEEecCCh
Q 001897 254 RLLRESNFLLILDDVWET--IDLDSLGVPQPEDHGGSKIILTSRSL 297 (998)
Q Consensus 254 ~l~~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~ 297 (998)
....++.-+||+|.+... ..++.+.. +.+ .|-.||+|-+..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 222232449999998653 12222211 111 266788888754
No 398
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.93 E-value=0.14 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.|.|.|+.|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998764
No 399
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.87 E-value=0.42 Score=50.28 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=35.1
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAER 233 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 233 (998)
.-.+++|+|.+|+|||||++.++....... -..++|+.... +..++.+.+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~----G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAM----GKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTS----CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHc----CCeEEEEeCcC--CHHHHHHHHHHH
Confidence 346899999999999999999988764321 11466665543 445555554443
No 400
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.86 E-value=0.1 Score=53.54 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...+|.|+|++|+||||+|+.+...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998764
No 401
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.83 E-value=0.12 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+++|+|+.|+|||||++.+..-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999998654
No 402
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.80 E-value=0.15 Score=54.11 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=23.5
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
....+|+|+|+.|+|||||++.+...+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998754
No 403
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.79 E-value=0.14 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.|.|.|+.|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 404
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.78 E-value=1.2 Score=43.34 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
.|+|-|.-|+||||.++.+++.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999988764
No 405
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.77 E-value=0.26 Score=53.39 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=28.2
Q ss_pred HHHHHhhc--CCCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 165 GKLMKLLD--CDEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 165 ~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.+++..+. ..+..+|+|+|.+|+||||++..+...+.
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444443 35678999999999999999999977653
No 406
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.75 E-value=0.34 Score=51.97 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 161 SKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 161 ~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++.+..+...+..+ .-+.++|++|+|||++|+.+.+..
T Consensus 33 ~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 33 KYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 34555555554443 368899999999999999998864
No 407
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.66 E-value=0.95 Score=51.62 Aligned_cols=62 Identities=10% Similarity=-0.058 Sum_probs=40.9
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001897 164 LGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAER 233 (998)
Q Consensus 164 ~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 233 (998)
+++++.-+ ..-.++.|.|.+|+||||+|.+++...... +-..++|++... +..++...++..
T Consensus 232 LD~~lgGl--~~G~l~li~G~pG~GKT~lal~~a~~~a~~----~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 232 INDKTLGA--RGGEVIMVTSGSGMVMSTFVRQQALQWGTA----MGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp HHHHHCCC--CTTCEEEEEESSCHHHHHHHHHHHHHHTTT----SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred hhHhhccc--CCCeEEEEeecCCCCchHHHHHHHHHHHHh----cCCcEEEEeccC--CHHHHHHHHHHH
Confidence 45554322 234688999999999999999998765421 123577777644 566777766543
No 408
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.66 E-value=0.14 Score=54.04 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++|.|+|+.|+||||||+.++..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998763
No 409
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.62 E-value=0.096 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.089 Sum_probs=21.1
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999765
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.62 E-value=0.16 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...|.|.|+.|+||||+|+.+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998864
No 411
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.55 E-value=0.8 Score=51.05 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=39.6
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001897 163 TLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAE 232 (998)
Q Consensus 163 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 232 (998)
.+++++.-+. .-.++.|.|.+|+||||+|.+++...... -..++|++... +..++...++.
T Consensus 186 ~LD~~lgGl~--~G~liiIaG~pG~GKTtlal~ia~~~a~~-----g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 186 ELDRMTYGYK--RRNFVLIAARPSMGKTAFALKQAKNMSDN-----DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp HHHHHHSSBC--SSCEEEEEECSSSSHHHHHHHHHHHHHHT-----TCEEEEECSSS--CTTHHHHHHHH
T ss_pred HHHhhcCCCC--CCcEEEEEeCCCCChHHHHHHHHHHHHHc-----CCEEEEEECCC--CHHHHHHHHHH
Confidence 4566553222 33689999999999999999998776432 13467776543 44455555443
No 412
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.44 E-value=0.12 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 413
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.40 E-value=0.14 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.++|.|.|+.|+||||||..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 414
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.38 E-value=0.14 Score=52.33 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.+++|+|+.|.|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999763
No 415
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.35 E-value=0.27 Score=52.00 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCC---CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 163 TLGKLMKLLDCD---EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 163 ~~~~l~~~l~~~---~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.+..+.+++..- ....+.|+|++|+|||+||+.+++...
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444554431 247889999999999999999998764
No 416
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.31 E-value=0.19 Score=53.26 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..++|+|+|.+|+||||++..++..+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999987765
No 417
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.29 E-value=0.19 Score=55.93 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
...+|+|+|.+|+|||||++.++..++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 456999999999999999999987764
No 418
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.28 E-value=0.14 Score=53.10 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.+++|+|+.|+|||||++.+..-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998654
No 419
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.24 E-value=0.12 Score=53.12 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+++|+|+.|.|||||++.++.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999998754
No 420
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.24 E-value=0.13 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..++|.|+|+.|+||||||..++..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998754
No 421
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.17 E-value=0.11 Score=51.59 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.+++|+|+.|.|||||++.++.-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998764
No 422
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.17 E-value=0.13 Score=52.23 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.+++|+|+.|.|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998764
No 423
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.14 E-value=0.17 Score=49.33 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.|+|+|.+|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 424
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.13 E-value=0.13 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+++|+|+.|.|||||++.++.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 4468999999999999999998754
No 425
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.10 E-value=0.15 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+++|+|+.|.|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999763
No 426
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.10 E-value=0.41 Score=48.73 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=31.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQI 230 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 230 (998)
-.++.|.|.+|+|||++|.+++..... ..-..+++++... +..++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~----~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAE----EYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHH----HHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH----hcCCCceeecccC--CHHHHHHHH
Confidence 368999999999999999987543211 1122456666543 455555544
No 427
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.08 E-value=0.13 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999997654
No 428
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.02 E-value=0.13 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.+++|+|+.|.|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998764
No 429
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.96 E-value=0.15 Score=52.61 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+++|+|+.|.|||||++.+..-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999764
No 430
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.92 E-value=0.14 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34789999999999999999987643
No 431
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.88 E-value=0.69 Score=59.64 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=56.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-----hhhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-----EESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~ 249 (998)
.-+++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++.+.+. ..+.++...
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~-----G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~ 451 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALE 451 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHH
Confidence 34689999999999999999997765422 2368899988877754 25666654321 123334444
Q ss_pred HHHHHHHcCCeEEEEEcccccc
Q 001897 250 RLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
.+.......+--++|+|.+...
T Consensus 452 ~l~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 452 ICDALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHHHhcCCCEEEECCHHHh
Confidence 4443333444569999998654
No 432
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.84 E-value=0.18 Score=52.47 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..++|.|+|+.|+||||||..++..+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 433
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.81 E-value=0.14 Score=52.39 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998764
No 434
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.81 E-value=0.14 Score=52.12 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.+++|+|+.|.|||||++.++.-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998664
No 435
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.79 E-value=0.55 Score=47.20 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=23.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
-..|.|.|+.|+||||+++.+...+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987653
No 436
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.62 E-value=0.15 Score=52.43 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+++|+|+.|.|||||++.++.-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999998754
No 437
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.57 E-value=0.15 Score=51.90 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.+++|+|+.|.|||||++.++.-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999998754
No 438
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.54 E-value=0.69 Score=60.46 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=56.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcc-----hhhhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVK-----MEESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~ 249 (998)
.-+++.|.|.+|+||||||.+++...... -..++|++....++... ++.++.+.. ...+.++...
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~-----G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~ 451 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALE 451 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHH
Confidence 34699999999999999999998775421 23588998888776542 556665321 1123344444
Q ss_pred HHHHHHHcCCeEEEEEcccccc
Q 001897 250 RLHERLLRESNFLLILDDVWET 271 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~~ 271 (998)
.+.......+--+||+|.+...
T Consensus 452 ~~~~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 452 ICDALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGGGC
T ss_pred HHHHHHHhcCCcEEEECCHHHh
Confidence 4443333444569999998644
No 439
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.52 E-value=0.11 Score=54.35 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=19.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
+..+|+|.|+.|+||||+|+.+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 440
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.51 E-value=0.15 Score=52.68 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997643
No 441
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.44 E-value=0.65 Score=45.87 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=23.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKR 202 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 202 (998)
..|.|.|+.|+||||+++.+.+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988753
No 442
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.44 E-value=0.23 Score=50.01 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.-..|.|.|+.|+||||+++.+.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999998753
No 443
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.38 E-value=0.24 Score=51.06 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...++.+.|.||+||||++..+...+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45788999999999999999998654
No 444
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.37 E-value=0.21 Score=51.39 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..-.+++|+|+.|+||||+++.+...+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 4457999999999999999999987653
No 445
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.36 E-value=0.16 Score=51.94 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997643
No 446
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.33 E-value=0.18 Score=52.78 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.5
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
..-.+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445789999999999999999998764
No 447
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.32 E-value=0.51 Score=53.05 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=52.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC-CCHHHHHHHHHH----HhcCCc---------ch
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE-LNLRWVQAQIAE----RLNLDV---------KM 240 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~----~l~~~~---------~~ 240 (998)
+-..++|.|..|+|||+|+.++.+. .+-+.++++-+.+. ..+.++.+++-+ .++... ..
T Consensus 231 rGqr~~Ifgg~g~GKT~L~~~ia~~-------~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~ts 303 (600)
T 3vr4_A 231 KGGAAAVPGPFGAGKTVVQHQIAKW-------SDVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTS 303 (600)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHH-------SSCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEET
T ss_pred CCCEEeeecCCCccHHHHHHHHHhc-------cCCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECC
Confidence 4468999999999999999999875 22356788877765 234444444322 112110 00
Q ss_pred hh------hHHHHHHHHHHHHH-cCCeEEEEEcccc
Q 001897 241 EE------SMQRLGIRLHERLL-RESNFLLILDDVW 269 (998)
Q Consensus 241 ~~------~~~~~~~~l~~~l~-~~~r~LlVlDdv~ 269 (998)
+. .....+..+.+++. .++.+||++|++.
T Consensus 304 d~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 304 NMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 00 11122334455554 3578999999985
No 448
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.30 E-value=0.16 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+++|+|+.|.|||||++.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999998764
No 449
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.29 E-value=0.29 Score=53.30 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...|.++|++|+|||++|+.+++..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998864
No 450
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.29 E-value=0.15 Score=49.38 Aligned_cols=115 Identities=13% Similarity=0.070 Sum_probs=69.6
Q ss_pred hhcccCCceEeecCCCCCCCC-----c-cccCCCCCCeeeecCCCCc-----ccChhhhcCcCCcEEeCCCCcccc----
Q 001897 580 LLQLHNCRALLLRDCFYLEDL-----P-ALGGLTKLQDLDLSATSIR-----ELPRGMENLSNLRRLNLSRTHYLK---- 644 (998)
Q Consensus 580 i~~l~~L~~L~L~~~~~~~~l-----p-~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~---- 644 (998)
+.+-+.|+.|+|+++..+..- . .+..-..|+.|+|++|.|. .+...+..-+.|++|+|++|..-.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344577999999875334321 2 3667788999999999887 344556666889999999887321
Q ss_pred cccccccCCCCCccEEEcccCcc-cccccCcccccccccccccccccCceEEEEee
Q 001897 645 KIQAGIICRLSSLEILDMTLSDY-HWRVKGQEDEGQTNFEELGCLERLLVLSIRLE 699 (998)
Q Consensus 645 ~~p~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 699 (998)
.+-.. +..-+.|++|+++++.. .... .........|..-+.|..|+++++
T Consensus 117 ala~a-L~~N~tL~~L~L~n~~~~~ig~----~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRS-TLVTQSIVEFKADNQRQSVLGN----QVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHH-TTTTCCCSEEECCCCSSCCCCH----HHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHH-HhhCCceeEEECCCCcCcCcCH----HHHHHHHHHHHhCCCcCeEeccCC
Confidence 12222 45556799999876422 1110 011122334555567777776543
No 451
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.28 E-value=0.38 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
...|.|+|.+|+|||++|+.+++.
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHHh
Confidence 345779999999999999999885
No 452
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.27 E-value=0.16 Score=52.69 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+++|+|+.|.|||||++.++.-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999998764
No 453
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.24 E-value=0.24 Score=52.49 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=31.1
Q ss_pred CCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC
Q 001897 173 CDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE 220 (998)
Q Consensus 173 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~ 220 (998)
....++|+|+|-||+||||+|..++..+... -..++-|++...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~-----G~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-----GKRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC-----CCeEEEEeCCCC
Confidence 3467899999999999999999998776532 124666776543
No 454
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.23 E-value=0.19 Score=49.24 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999764
No 455
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.18 E-value=0.21 Score=51.60 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999988653
No 456
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.15 E-value=0.21 Score=52.79 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 457
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.15 E-value=0.24 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.4
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
+-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 458
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.09 E-value=0.25 Score=49.94 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...+|+|.|+.|+||||+++.+...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998753
No 459
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.07 E-value=0.21 Score=47.18 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 460
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.01 E-value=0.2 Score=52.22 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
-.++.|+|++|+|||||+..++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999987554
No 461
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.78 E-value=0.2 Score=55.49 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
....+|.|+|++|+||||+|+.+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999998765
No 462
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.71 E-value=0.26 Score=53.30 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=22.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++|+|.|+.|+||||||..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998864
No 463
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.51 E-value=1.4 Score=48.82 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=52.1
Q ss_pred CceEEEEEeCCCChHHHHHH-HHHHHhhhccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhcCCc------chhh---
Q 001897 175 EIRRIGIWGLGGIGKTTLVK-NLNNILKRDSSAHRSGM-VIWATVSKEL-NLRWVQAQIAERLNLDV------KMEE--- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~-~v~~~~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~--- 242 (998)
+-..++|+|..|+|||+||. .+.+.. .-+. ++++-+.+.. .+.++.+.+.+.=..+. ..++
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~-------~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~ 246 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK-------GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPAS 246 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT-------TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh-------cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHH
Confidence 34578999999999999964 666642 2443 5677777654 35556666544211110 0000
Q ss_pred ---hHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 243 ---SMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 243 ---~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
-....+..+.+++. .++.+|+++||+...
T Consensus 247 ~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 247 LQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 11122334455554 357999999998543
No 464
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.48 E-value=0.27 Score=55.51 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 161 SKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 161 ~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
++.++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 28 ~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 28 SHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 34455555544433 468899999999999999998754
No 465
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.39 E-value=0.22 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-+.|.|.|+.|+||||||.++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999999775
No 466
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.36 E-value=1.6 Score=48.53 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=52.2
Q ss_pred CceEEEEEeCCCChHHHHHH-HHHHHhhhccccCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhcCCc------chhh---
Q 001897 175 EIRRIGIWGLGGIGKTTLVK-NLNNILKRDSSAHRSG-MVIWATVSKEL-NLRWVQAQIAERLNLDV------KMEE--- 242 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~-~v~~~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~--- 242 (998)
+-..++|+|..|+|||+||. .+.+.. .-+ .++++-+.+.. .+.++.+.+.+.=..+. ..++
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~-------~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 233 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK-------GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAP 233 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG-------SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh-------cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHH
Confidence 34678999999999999964 666642 234 34677777654 35556666554221111 0011
Q ss_pred ---hHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 243 ---SMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 243 ---~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
-....+..+.+++. .++.+|+++||+...
T Consensus 234 ~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 234 LLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 11112234455554 357999999998543
No 467
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.25 E-value=0.31 Score=49.45 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...|+|.|..|+||||+++.+...+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999998865
No 468
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.23 E-value=0.21 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.+++|+|+.|.|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998653
No 469
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.19 E-value=0.48 Score=46.83 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=20.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.|.+.|.||+||||+|..+.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478899999999999998887764
No 470
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.16 E-value=0.23 Score=47.95 Aligned_cols=21 Identities=43% Similarity=0.574 Sum_probs=19.0
Q ss_pred EEEEEeCCCChHHHHHHHHHH
Q 001897 178 RIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~ 198 (998)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998865
No 471
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.08 E-value=0.27 Score=46.01 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHH
Q 001897 178 RIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 178 vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999998764
No 472
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.05 E-value=0.21 Score=50.30 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
.-.+|+|.|+.|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999998865
No 473
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.02 E-value=0.21 Score=52.48 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|+|+.|.|||||++.+..-+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 44689999999999999999986643
No 474
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.97 E-value=0.31 Score=52.84 Aligned_cols=26 Identities=31% Similarity=0.176 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
..-.+++|+|++|.|||||++.+...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45579999999999999999999875
No 475
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=87.94 E-value=1.8 Score=47.96 Aligned_cols=90 Identities=23% Similarity=0.244 Sum_probs=52.3
Q ss_pred CceEEEEEeCCCChHHHHH-HHHHHHhhhccccCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhcCCc--------chh--
Q 001897 175 EIRRIGIWGLGGIGKTTLV-KNLNNILKRDSSAHRSG-MVIWATVSKEL-NLRWVQAQIAERLNLDV--------KME-- 241 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~-- 241 (998)
+-..++|.|..|+|||+|| ..+.+. ..-+ .++++-+.+.. .+.++.+.+.+.=..+. +..
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~-------~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~ 233 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ-------RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAA 233 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT-------SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh-------ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChH
Confidence 3457899999999999997 456553 1233 36778887654 35566666544311111 000
Q ss_pred --hhHHHHHHHHHHHHH-cCCeEEEEEcccccc
Q 001897 242 --ESMQRLGIRLHERLL-RESNFLLILDDVWET 271 (998)
Q Consensus 242 --~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~ 271 (998)
.-....+..+.+++. .++.+|+++||+...
T Consensus 234 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 234 LQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 011122233444443 457999999998543
No 476
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.90 E-value=0.23 Score=51.75 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 477
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.79 E-value=0.5 Score=50.91 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
+..+|+|+|.+|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999999987543
No 478
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.70 E-value=0.31 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.7
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999763
No 479
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.68 E-value=1 Score=44.46 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
..|.|.|+.|+||||+++.+.+.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999988765
No 480
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.66 E-value=0.29 Score=46.05 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.--|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 481
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.56 E-value=0.38 Score=46.12 Aligned_cols=34 Identities=35% Similarity=0.415 Sum_probs=25.0
Q ss_pred HHHHHhhcC-CCceEEEEEeCCCChHHHHHHHHHH
Q 001897 165 GKLMKLLDC-DEIRRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 165 ~~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
.++.+.+-. .....|+|+|.+|+|||||...+..
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 344444444 5567789999999999999987753
No 482
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.55 E-value=0.32 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...++|.|++|+||||+|+.+.+.+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998764
No 483
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.38 E-value=0.32 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.+.+|+|..|.|||||+.+++--+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999997643
No 484
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.32 E-value=0.28 Score=52.22 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.+++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999998764
No 485
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.31 E-value=0.23 Score=55.05 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.0
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.++|+|+|.+|+||||++..++..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987654
No 486
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.26 E-value=0.31 Score=47.15 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.2
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36889999999999999999764
No 487
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.25 E-value=0.3 Score=52.41 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 44689999999999999999987643
No 488
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.23 E-value=0.47 Score=45.53 Aligned_cols=26 Identities=46% Similarity=0.575 Sum_probs=21.9
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.....|+|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988653
No 489
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.23 E-value=0.57 Score=45.12 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHH
Q 001897 165 GKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNN 198 (998)
Q Consensus 165 ~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~ 198 (998)
.++.+ +.......|+|+|.+|+|||||...+.+
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34555 3345556789999999999999999875
No 490
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.21 E-value=0.31 Score=52.21 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-.+++|+|+.|.|||||.+.++--
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3468999999999999999999764
No 491
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.20 E-value=0.31 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 492
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.14 E-value=0.35 Score=56.58 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=31.9
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEEeCCCChHHHHHHHHHHHh
Q 001897 156 HQTTASKTLGKLMKLLDCDEIRRIGIWGLGGIGKTTLVKNLNNIL 200 (998)
Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 200 (998)
...|....++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 3445555566655555544 588999999999999999998864
No 493
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.07 E-value=0.81 Score=47.17 Aligned_cols=39 Identities=31% Similarity=0.523 Sum_probs=28.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCC
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKE 220 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~ 220 (998)
++|+|.|-||+||||+|..++..+... -..++-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~-----G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM-----GKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT-----TCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC-----CCcEEEEcCCCC
Confidence 678889999999999999998876531 124666766533
No 494
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.99 E-value=1.2 Score=53.24 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=43.2
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001897 176 IRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKMEESMQRLGIRLHERL 255 (998)
Q Consensus 176 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 255 (998)
.+-|.++|++|.|||.+|+++++.... -++.++ ..+ ++....+ ++ +.....+.+..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~----------~f~~v~----~~~----l~s~~vG-----es-e~~vr~lF~~A 566 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA----------NFISIK----GPE----LLTMWFG-----ES-EANVREIFDKA 566 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTC----------EEEECC----HHH----HHTTTCS-----SC-HHHHHHHHHHH
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCC----------ceEEec----cch----hhccccc-----hH-HHHHHHHHHHH
Confidence 356889999999999999999986321 123332 112 2221111 11 22334455555
Q ss_pred HcCCeEEEEEcccccc
Q 001897 256 LRESNFLLILDDVWET 271 (998)
Q Consensus 256 ~~~~r~LlVlDdv~~~ 271 (998)
+......|+||+++..
T Consensus 567 r~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 567 RQAAPCVLFFDELDSI 582 (806)
T ss_dssp HTTCSEEEECSCGGGC
T ss_pred HHcCCceeechhhhHH
Confidence 5556899999998753
No 495
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.92 E-value=0.8 Score=49.09 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=32.7
Q ss_pred cCCCceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCC
Q 001897 172 DCDEIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELN 222 (998)
Q Consensus 172 ~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 222 (998)
.....+++.+.|.||+||||+|..++..+... ..-..++-|+.....+
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~---~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALA---QPNEQFLLISTDPAHN 61 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHH---CTTSCEEEEECCSSCH
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh---cCCCeEEEEECCCCCC
Confidence 34566899999999999999999988765410 1122466676654433
No 496
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.84 E-value=0.4 Score=46.45 Aligned_cols=25 Identities=32% Similarity=0.189 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4458899999999999999998764
No 497
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.82 E-value=1.4 Score=56.76 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=59.6
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHHhhhccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCcch-----hhhHHHHHH
Q 001897 175 EIRRIGIWGLGGIGKTTLVKNLNNILKRDSSAHRSGMVIWATVSKELNLRWVQAQIAERLNLDVKM-----EESMQRLGI 249 (998)
Q Consensus 175 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~ 249 (998)
+-++|-|+|+.|+||||||.++...... .=...+|+++.+..++.- ++.+|.+.+. .++-++...
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~-----~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~ 1499 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALE 1499 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHh-----cCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHH
Confidence 3479999999999999999999865432 245689999988887764 7777765432 112233344
Q ss_pred HHHHHHHcCCeEEEEEccccc
Q 001897 250 RLHERLLRESNFLLILDDVWE 270 (998)
Q Consensus 250 ~l~~~l~~~~r~LlVlDdv~~ 270 (998)
.+...++.+.--++|+|-|-.
T Consensus 1500 ~~~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1500 ICDALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCSTT
T ss_pred HHHHHHHcCCCCEEEEccHHh
Confidence 445555566567999998743
No 498
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=86.80 E-value=0.42 Score=46.05 Aligned_cols=25 Identities=32% Similarity=0.170 Sum_probs=20.9
Q ss_pred eEEEEEeCCCChHHHHHHHHHHHhh
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNILK 201 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~~~ 201 (998)
.++.|+|+.|+||||++..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999977776653
No 499
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.78 E-value=0.38 Score=46.72 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHH
Q 001897 174 DEIRRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 174 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.....|+|+|.+|+|||||...+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34577999999999999999998764
No 500
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.75 E-value=0.35 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.2
Q ss_pred eEEEEEeCCCChHHHHHHHHHHH
Q 001897 177 RRIGIWGLGGIGKTTLVKNLNNI 199 (998)
Q Consensus 177 ~vi~I~G~gG~GKTtLa~~v~~~ 199 (998)
.-|+|+|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998764
Done!