Query 001898
Match_columns 998
No_of_seqs 466 out of 2781
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 11:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02727 NAD kinase 100.0 2E-249 4E-254 2168.4 77.5 970 7-998 1-986 (986)
2 KOG2178 Predicted sugar kinase 100.0 4E-74 8.8E-79 630.5 28.4 332 661-998 65-409 (409)
3 PLN02935 Bifunctional NADH kin 100.0 3.1E-70 6.7E-75 622.2 34.8 318 675-997 179-502 (508)
4 PRK02649 ppnK inorganic polyph 100.0 6.8E-67 1.5E-71 571.8 35.0 295 691-998 2-300 (305)
5 PRK04539 ppnK inorganic polyph 100.0 4.8E-66 1E-70 563.2 33.0 289 687-993 2-295 (296)
6 PRK14077 pnk inorganic polypho 100.0 1.4E-65 3E-70 557.5 34.5 278 689-990 9-286 (287)
7 PRK01911 ppnK inorganic polyph 100.0 5E-65 1.1E-69 554.3 35.3 288 692-994 2-291 (292)
8 PRK03372 ppnK inorganic polyph 100.0 9.7E-65 2.1E-69 554.8 35.6 293 688-992 3-299 (306)
9 PRK03378 ppnK inorganic polyph 100.0 1.6E-64 3.5E-69 550.5 35.6 287 688-992 3-290 (292)
10 PRK02231 ppnK inorganic polyph 100.0 1.5E-63 3.3E-68 537.7 32.6 269 707-992 2-271 (272)
11 PRK01231 ppnK inorganic polyph 100.0 8E-63 1.7E-67 537.9 35.3 287 690-993 4-291 (295)
12 PRK02155 ppnK NAD(+)/NADH kina 100.0 1.3E-62 2.8E-67 535.4 34.2 285 688-991 3-288 (291)
13 PRK01185 ppnK inorganic polyph 100.0 3.1E-60 6.6E-65 512.0 33.9 264 692-988 2-266 (271)
14 PRK02645 ppnK inorganic polyph 100.0 6.2E-60 1.3E-64 517.4 33.7 288 690-996 3-299 (305)
15 PRK14076 pnk inorganic polypho 100.0 2.3E-59 4.9E-64 549.9 34.8 285 684-990 284-569 (569)
16 COG0061 nadF NAD kinase [Coenz 100.0 8E-59 1.7E-63 503.4 34.6 280 691-991 1-281 (281)
17 PRK03501 ppnK inorganic polyph 100.0 5.7E-59 1.2E-63 500.4 33.0 254 691-987 3-263 (264)
18 PRK03708 ppnK inorganic polyph 100.0 8.9E-59 1.9E-63 502.3 34.1 273 692-990 2-276 (277)
19 PRK04885 ppnK inorganic polyph 100.0 3E-57 6.6E-62 487.5 31.7 251 692-988 2-261 (265)
20 PRK14075 pnk inorganic polypho 100.0 7.2E-56 1.6E-60 474.9 32.7 254 692-993 2-255 (256)
21 PRK00561 ppnK inorganic polyph 100.0 2E-55 4.4E-60 471.2 31.9 245 692-987 2-255 (259)
22 PF01513 NAD_kinase: ATP-NAD k 100.0 6.1E-54 1.3E-58 465.3 25.7 270 692-971 1-284 (285)
23 PRK04761 ppnK inorganic polyph 100.0 8.5E-51 1.8E-55 432.8 27.3 214 754-985 24-241 (246)
24 PLN02929 NADH kinase 100.0 3.4E-49 7.3E-54 430.2 29.1 234 704-972 33-296 (301)
25 PF13350 Y_phosphatase3: Tyros 99.9 9.3E-24 2E-28 211.9 10.4 132 247-387 1-164 (164)
26 PF03162 Y_phosphatase2: Tyros 99.8 1.7E-20 3.7E-25 190.1 11.8 122 245-385 4-129 (164)
27 TIGR01244 conserved hypothetic 99.8 4.6E-19 1E-23 173.9 14.5 113 267-383 7-121 (135)
28 KOG4180 Predicted kinase [Gene 99.8 1.5E-18 3.2E-23 188.1 11.4 206 753-965 103-386 (395)
29 PF04273 DUF442: Putative phos 99.7 5.4E-17 1.2E-21 155.0 10.7 100 267-370 7-108 (110)
30 COG3453 Uncharacterized protei 99.6 7.2E-15 1.6E-19 141.0 12.5 111 267-381 8-120 (130)
31 KOG1572 Predicted protein tyro 99.5 1.4E-13 3E-18 145.4 11.6 128 244-390 56-191 (249)
32 smart00195 DSPc Dual specifici 99.5 2.6E-13 5.6E-18 131.6 12.1 106 267-383 6-115 (138)
33 cd00127 DSPc Dual specificity 99.4 1.3E-12 2.9E-17 125.7 11.1 108 267-383 7-118 (139)
34 COG2365 Protein tyrosine/serin 99.4 3.1E-13 6.7E-18 145.6 6.4 128 267-395 53-184 (249)
35 PTZ00393 protein tyrosine phos 99.3 2.7E-11 5.9E-16 129.5 12.5 99 277-383 106-206 (241)
36 PTZ00242 protein tyrosine phos 99.2 7.9E-11 1.7E-15 120.0 13.2 108 268-383 17-135 (166)
37 PF00782 DSPc: Dual specificit 99.2 2.9E-11 6.3E-16 116.2 7.3 105 269-382 1-109 (133)
38 PF05706 CDKN3: Cyclin-depende 99.2 5.1E-11 1.1E-15 121.2 7.7 101 277-380 61-168 (168)
39 PRK12361 hypothetical protein; 99.1 4.2E-10 9.1E-15 133.3 13.9 108 267-381 100-211 (547)
40 KOG1720 Protein tyrosine phosp 98.8 2.4E-08 5.2E-13 104.7 9.6 94 280-381 87-182 (225)
41 TIGR00147 lipid kinase, YegS/R 98.7 8.7E-07 1.9E-11 96.8 20.8 109 691-812 2-118 (293)
42 KOG1719 Dual specificity phosp 98.3 3.1E-06 6.8E-11 85.5 9.3 99 278-381 42-144 (183)
43 KOG2836 Protein tyrosine phosp 98.2 6.1E-06 1.3E-10 81.7 9.5 106 268-381 18-131 (173)
44 PF14566 PTPlike_phytase: Inos 98.2 2.9E-06 6.3E-11 85.3 7.1 63 308-370 84-147 (149)
45 COG2453 CDC14 Predicted protei 98.1 5.8E-06 1.3E-10 85.4 8.3 76 311-386 67-146 (180)
46 KOG1716 Dual specificity phosp 98.1 1.8E-05 3.9E-10 87.3 10.4 110 266-384 79-193 (285)
47 KOG1717 Dual specificity phosp 97.9 3.7E-05 8.1E-10 83.5 9.1 105 267-380 177-285 (343)
48 smart00404 PTPc_motif Protein 97.7 4.4E-05 9.6E-10 69.3 5.1 53 319-371 5-63 (105)
49 smart00012 PTPc_DSPc Protein t 97.7 4.4E-05 9.6E-10 69.3 5.1 53 319-371 5-63 (105)
50 KOG1718 Dual specificity phosp 97.7 0.00024 5.3E-09 73.1 10.8 103 267-380 22-128 (198)
51 PRK13057 putative lipid kinase 97.6 0.01 2.2E-07 65.3 22.4 60 753-812 48-109 (287)
52 PRK00861 putative lipid kinase 97.5 0.038 8.1E-07 61.3 25.6 107 691-812 3-116 (300)
53 PRK12361 hypothetical protein; 97.2 0.057 1.2E-06 65.0 23.8 241 690-973 242-542 (547)
54 PRK13059 putative lipid kinase 97.1 0.093 2E-06 58.3 23.2 108 691-812 2-117 (295)
55 PRK13055 putative lipid kinase 97.0 0.13 2.9E-06 58.1 23.1 106 691-812 3-121 (334)
56 PRK13337 putative lipid kinase 96.9 0.11 2.5E-06 57.7 21.1 106 691-812 2-118 (304)
57 cd00047 PTPc Protein tyrosine 96.8 0.0024 5.2E-08 67.5 6.6 50 332-381 147-206 (231)
58 smart00194 PTPc Protein tyrosi 96.5 0.0059 1.3E-07 65.9 6.9 52 331-382 174-234 (258)
59 COG1597 LCB5 Sphingosine kinas 96.4 0.72 1.6E-05 51.9 22.9 235 691-974 3-297 (301)
60 COG5599 PTP2 Protein tyrosine 96.2 0.0034 7.4E-08 68.8 3.6 44 327-370 196-241 (302)
61 PRK11914 diacylglycerol kinase 96.2 0.029 6.2E-07 62.3 10.7 109 690-812 8-124 (306)
62 COG3199 Predicted inorganic po 95.6 0.02 4.2E-07 65.1 6.1 60 754-814 99-160 (355)
63 PRK13054 lipid kinase; Reviewe 95.3 0.071 1.5E-06 59.2 9.3 107 690-812 3-119 (300)
64 PHA02740 protein tyrosine phos 95.3 0.023 4.9E-07 63.8 5.4 22 347-368 221-242 (298)
65 PRK15375 pathogenicity island 95.1 0.062 1.3E-06 64.0 8.4 55 331-386 439-507 (535)
66 PHA02742 protein tyrosine phos 95.1 0.024 5.3E-07 63.5 4.7 22 347-368 229-250 (303)
67 PLN02727 NAD kinase 94.8 0.032 7E-07 70.1 5.1 81 523-610 533-614 (986)
68 KOG2283 Clathrin coat dissocia 94.7 0.023 5E-07 66.8 3.4 96 281-386 45-148 (434)
69 COG5350 Predicted protein tyro 94.6 0.085 1.9E-06 54.1 6.7 86 282-368 27-114 (172)
70 PHA02747 protein tyrosine phos 94.6 0.037 8.1E-07 62.3 4.6 22 348-369 230-251 (312)
71 KOG0792 Protein tyrosine phosp 94.6 0.039 8.5E-07 69.5 5.1 50 332-381 1045-1103(1144)
72 PLN02160 thiosulfate sulfurtra 94.4 0.17 3.8E-06 50.3 8.4 87 275-375 17-107 (136)
73 PHA02746 protein tyrosine phos 94.3 0.051 1.1E-06 61.5 5.1 22 348-369 248-269 (323)
74 PF00102 Y_phosphatase: Protei 94.3 0.046 1E-06 56.9 4.3 40 331-370 151-193 (235)
75 TIGR03702 lip_kinase_YegS lipi 94.3 0.18 4E-06 55.8 9.2 59 754-812 51-115 (293)
76 PF00781 DAGK_cat: Diacylglyce 94.3 0.058 1.3E-06 52.5 4.7 35 756-790 55-93 (130)
77 cd01523 RHOD_Lact_B Member of 94.3 0.15 3.2E-06 47.1 7.1 85 276-375 2-87 (100)
78 PHA02738 hypothetical protein; 93.7 0.055 1.2E-06 61.2 3.9 22 347-368 227-248 (320)
79 cd01518 RHOD_YceA Member of th 93.6 0.27 5.8E-06 45.5 7.6 85 274-375 3-87 (101)
80 cd01533 4RHOD_Repeat_2 Member 93.5 0.28 6.1E-06 46.1 7.6 82 273-375 10-92 (109)
81 PLN02204 diacylglycerol kinase 92.9 0.99 2.2E-05 55.3 12.8 113 649-774 105-237 (601)
82 KOG0793 Protein tyrosine phosp 92.4 1.3 2.9E-05 54.3 12.6 49 333-381 910-965 (1004)
83 PLN02958 diacylglycerol kinase 92.0 0.62 1.3E-05 55.8 9.5 113 686-812 107-238 (481)
84 cd01448 TST_Repeat_1 Thiosulfa 91.9 0.74 1.6E-05 43.9 8.2 95 276-375 3-106 (122)
85 KOG2386 mRNA capping enzyme, g 91.4 0.2 4.4E-06 58.2 4.4 102 274-381 47-159 (393)
86 KOG0791 Protein tyrosine phosp 91.2 0.26 5.7E-06 56.6 5.0 47 325-371 261-311 (374)
87 KOG0789 Protein tyrosine phosp 91.2 0.23 5E-06 56.9 4.6 24 345-368 297-320 (415)
88 smart00046 DAGKc Diacylglycero 91.0 0.25 5.4E-06 48.3 4.1 35 755-789 49-88 (124)
89 COG0607 PspE Rhodanese-related 89.8 1 2.2E-05 41.5 6.8 79 277-376 9-88 (110)
90 cd01444 GlpE_ST GlpE sulfurtra 89.2 1.7 3.7E-05 39.3 7.7 80 275-375 2-82 (96)
91 cd01519 RHOD_HSP67B2 Member of 89.1 1.2 2.7E-05 41.1 6.8 87 276-375 2-92 (106)
92 cd01528 RHOD_2 Member of the R 88.9 1.6 3.5E-05 40.4 7.4 81 274-375 1-84 (101)
93 cd01534 4RHOD_Repeat_3 Member 88.4 2 4.3E-05 39.4 7.6 79 276-375 2-82 (95)
94 KOG0790 Protein tyrosine phosp 87.8 0.35 7.6E-06 56.6 2.6 32 333-364 432-468 (600)
95 cd01527 RHOD_YgaP Member of th 86.8 1.2 2.7E-05 40.8 5.3 77 275-375 4-80 (99)
96 cd01449 TST_Repeat_2 Thiosulfa 86.2 1.8 3.9E-05 40.8 6.2 95 276-375 2-104 (118)
97 KOG1530 Rhodanese-related sulf 85.6 2.8 6E-05 42.4 7.2 82 276-370 26-111 (136)
98 PF00581 Rhodanese: Rhodanese- 85.5 3.3 7.2E-05 37.9 7.4 80 276-367 1-86 (113)
99 PRK05320 rhodanese superfamily 85.4 2 4.3E-05 47.5 6.9 86 273-375 110-201 (257)
100 cd01524 RHOD_Pyr_redox Member 85.4 3.2 6.9E-05 37.7 7.1 75 276-374 2-76 (90)
101 PRK14071 6-phosphofructokinase 84.1 1.4 3.1E-05 51.0 5.2 54 755-810 107-170 (360)
102 cd01522 RHOD_1 Member of the R 84.1 6.4 0.00014 37.9 8.9 85 276-375 2-90 (117)
103 TIGR02482 PFKA_ATP 6-phosphofr 83.9 1.1 2.5E-05 50.6 4.3 54 754-809 90-153 (301)
104 cd01526 RHOD_ThiF Member of th 83.9 2.4 5.3E-05 40.8 6.0 87 273-374 8-97 (122)
105 COG0205 PfkA 6-phosphofructoki 83.5 1.2 2.7E-05 51.3 4.4 54 754-809 93-156 (347)
106 PRK01415 hypothetical protein; 83.2 2.8 6.2E-05 46.3 6.8 84 271-375 110-197 (247)
107 PRK00162 glpE thiosulfate sulf 83.0 4.3 9.3E-05 38.1 7.1 78 275-375 7-84 (108)
108 cd01530 Cdc25 Cdc25 phosphatas 82.7 5.6 0.00012 38.8 8.0 25 345-370 66-91 (121)
109 cd01520 RHOD_YbbB Member of th 82.2 5.6 0.00012 38.8 7.8 28 345-374 84-112 (128)
110 cd00763 Bacterial_PFK Phosphof 81.2 2.4 5.1E-05 48.4 5.5 53 754-809 91-153 (317)
111 KOG4228 Protein tyrosine phosp 80.5 1.5 3.2E-05 56.5 3.9 32 333-364 713-747 (1087)
112 PTZ00286 6-phospho-1-fructokin 80.5 2 4.3E-05 51.3 4.8 53 754-808 175-242 (459)
113 PRK05600 thiamine biosynthesis 80.4 3.6 7.7E-05 47.8 6.7 85 274-374 272-357 (370)
114 PRK10287 thiosulfate:cyanide s 80.4 3.6 7.8E-05 39.5 5.6 67 288-375 20-86 (104)
115 PRK14072 6-phosphofructokinase 80.2 1.9 4.1E-05 50.9 4.4 53 754-808 102-169 (416)
116 PRK00142 putative rhodanese-re 80.1 4.7 0.0001 45.9 7.4 84 271-375 110-197 (314)
117 TIGR02981 phageshock_pspE phag 79.4 5.2 0.00011 38.1 6.3 69 286-375 16-84 (101)
118 KOG4471 Phosphatidylinositol 3 79.1 2.6 5.6E-05 51.3 5.0 26 345-370 372-397 (717)
119 PF06602 Myotub-related: Myotu 78.7 2.8 6E-05 48.5 5.1 32 338-370 223-254 (353)
120 PLN02884 6-phosphofructokinase 78.7 1.9 4.1E-05 50.9 3.8 124 683-809 46-210 (411)
121 PRK06830 diphosphate--fructose 77.5 2.5 5.5E-05 50.3 4.4 53 754-808 171-238 (443)
122 PRK06555 pyrophosphate--fructo 77.5 2.1 4.7E-05 50.3 3.7 54 754-809 111-179 (403)
123 KOG4435 Predicted lipid kinase 76.9 7.4 0.00016 45.7 7.6 85 755-850 116-213 (535)
124 PLN02564 6-phosphofructokinase 76.5 2.7 5.9E-05 50.5 4.3 54 754-809 175-243 (484)
125 TIGR02483 PFK_mixed phosphofru 76.3 3.2 6.9E-05 47.5 4.6 54 754-810 93-156 (324)
126 cd08194 Fe-ADH6 Iron-containin 74.8 5.3 0.00012 46.1 6.0 88 690-787 23-130 (375)
127 cd01521 RHOD_PspE2 Member of t 74.7 8.4 0.00018 36.4 6.3 82 272-375 7-92 (110)
128 PRK03202 6-phosphofructokinase 72.2 5.1 0.00011 45.8 4.9 52 754-808 92-153 (320)
129 PRK06895 putative anthranilate 71.6 12 0.00025 39.2 7.1 75 691-789 2-82 (190)
130 cd00363 PFK Phosphofructokinas 71.5 5.1 0.00011 46.1 4.8 55 754-810 91-160 (338)
131 cd08193 HVD 5-hydroxyvalerate 70.9 6.3 0.00014 45.5 5.4 88 690-787 26-133 (376)
132 cd01529 4RHOD_Repeats Member o 70.5 7.7 0.00017 35.5 4.9 29 345-375 54-82 (96)
133 cd01525 RHOD_Kc Member of the 70.0 12 0.00026 34.6 6.1 27 347-375 65-91 (105)
134 PRK09860 putative alcohol dehy 69.1 7.4 0.00016 45.3 5.5 88 690-787 31-138 (383)
135 cd08176 LPO Lactadehyde:propan 68.7 7.7 0.00017 44.8 5.5 94 691-794 29-144 (377)
136 COG1454 EutG Alcohol dehydroge 68.0 5.9 0.00013 46.4 4.3 76 690-775 29-105 (377)
137 cd08169 DHQ-like Dehydroquinat 67.2 12 0.00027 42.9 6.7 92 690-787 23-117 (344)
138 PF00365 PFK: Phosphofructokin 66.6 2.3 5.1E-05 47.6 0.8 54 754-809 91-154 (282)
139 smart00450 RHOD Rhodanese Homo 66.3 28 0.0006 30.7 7.4 30 345-376 54-83 (100)
140 cd01447 Polysulfide_ST Polysul 66.1 20 0.00044 32.6 6.7 28 346-375 60-87 (103)
141 PRK07765 para-aminobenzoate sy 66.0 12 0.00027 40.1 6.0 79 692-789 2-86 (214)
142 TIGR00566 trpG_papA glutamine 65.3 13 0.00028 39.0 5.8 34 755-789 43-82 (188)
143 cd08185 Fe-ADH1 Iron-containin 65.0 12 0.00027 43.2 6.2 76 691-775 26-102 (380)
144 cd08181 PPD-like 1,3-propanedi 64.9 11 0.00024 43.3 5.8 87 691-787 26-132 (357)
145 cd08179 NADPH_BDH NADPH-depend 63.3 11 0.00025 43.5 5.5 75 691-775 24-100 (375)
146 TIGR03865 PQQ_CXXCW PQQ-depend 63.0 57 0.0012 33.6 9.9 98 274-375 37-143 (162)
147 PRK11784 tRNA 2-selenouridine 62.9 29 0.00063 40.2 8.6 28 346-375 87-115 (345)
148 cd08171 GlyDH-like2 Glycerol d 62.7 15 0.00033 42.0 6.3 97 691-797 23-122 (345)
149 cd01443 Cdc25_Acr2p Cdc25 enzy 62.2 36 0.00078 32.3 7.8 77 275-367 4-86 (113)
150 cd08178 AAD_C C-terminal alcoh 62.2 9 0.00019 44.7 4.4 76 690-775 21-97 (398)
151 PRK10624 L-1,2-propanediol oxi 62.0 12 0.00026 43.4 5.4 75 691-775 31-106 (382)
152 PRK07411 hypothetical protein; 61.8 16 0.00034 42.9 6.3 84 274-375 283-368 (390)
153 TIGR02477 PFKA_PPi diphosphate 61.7 7.5 0.00016 47.5 3.8 34 754-787 160-198 (539)
154 PRK08762 molybdopterin biosynt 61.6 21 0.00045 41.5 7.2 79 275-375 5-83 (376)
155 cd08192 Fe-ADH7 Iron-containin 61.4 8.5 0.00018 44.3 4.0 76 690-775 24-100 (370)
156 cd08187 BDH Butanol dehydrogen 61.4 13 0.00028 43.1 5.5 89 690-787 28-136 (382)
157 PRK06774 para-aminobenzoate sy 61.1 14 0.0003 38.6 5.2 34 755-789 43-82 (191)
158 PLN02251 pyrophosphate-depende 60.7 8 0.00017 47.5 3.8 54 754-809 189-259 (568)
159 cd08551 Fe-ADH iron-containing 60.6 10 0.00022 43.6 4.4 96 690-795 23-140 (370)
160 TIGR02638 lactal_redase lactal 60.2 12 0.00026 43.3 5.0 75 690-774 29-104 (379)
161 TIGR01357 aroB 3-dehydroquinat 60.2 14 0.00029 42.2 5.3 90 690-787 20-115 (344)
162 PRK07085 diphosphate--fructose 60.1 8.4 0.00018 47.3 3.8 32 755-786 164-200 (555)
163 cd08186 Fe-ADH8 Iron-containin 59.9 13 0.00029 43.0 5.3 76 690-775 26-103 (383)
164 KOG1089 Myotubularin-related p 59.8 15 0.00033 45.0 5.9 35 345-379 342-376 (573)
165 PRK07878 molybdopterin biosynt 59.2 25 0.00054 41.2 7.3 81 274-375 288-369 (392)
166 cd08173 Gro1PDH Sn-glycerol-1- 59.1 24 0.00052 40.2 7.1 82 691-787 26-110 (339)
167 cd08170 GlyDH Glycerol dehydro 58.9 24 0.00052 40.3 7.0 86 690-787 22-109 (351)
168 cd08175 G1PDH Glycerol-1-phosp 58.9 20 0.00044 40.9 6.4 88 691-787 24-112 (348)
169 cd07766 DHQ_Fe-ADH Dehydroquin 58.8 15 0.00034 41.3 5.4 33 754-787 77-112 (332)
170 PLN03028 pyrophosphate--fructo 58.7 9 0.0002 47.5 3.8 33 754-786 172-209 (610)
171 PRK06186 hypothetical protein; 58.2 24 0.00052 38.8 6.5 36 753-788 51-91 (229)
172 PRK01269 tRNA s(4)U8 sulfurtra 57.7 16 0.00035 43.9 5.6 67 289-374 408-474 (482)
173 cd00765 Pyrophosphate_PFK Phos 57.2 9.9 0.00021 46.6 3.8 43 754-796 165-224 (550)
174 PRK00002 aroB 3-dehydroquinate 56.9 24 0.00051 40.7 6.6 91 690-787 31-126 (358)
175 cd08177 MAR Maleylacetate redu 56.5 16 0.00036 41.5 5.2 85 690-787 23-109 (337)
176 PTZ00468 phosphofructokinase f 56.5 9.4 0.0002 50.7 3.6 44 754-797 799-864 (1328)
177 PLN02723 3-mercaptopyruvate su 55.4 29 0.00062 39.5 6.9 44 330-375 252-295 (320)
178 cd08195 DHQS Dehydroquinate sy 55.3 24 0.00053 40.3 6.3 91 690-787 24-119 (345)
179 TIGR02478 6PF1K_euk 6-phosphof 55.2 10 0.00023 48.0 3.6 54 754-809 477-546 (745)
180 PLN02834 3-dehydroquinate synt 55.1 18 0.00039 43.1 5.4 32 756-788 164-198 (433)
181 cd08182 HEPD Hydroxyethylphosp 55.1 21 0.00045 41.2 5.7 73 690-775 23-96 (367)
182 PTZ00287 6-phosphofructokinase 55.0 13 0.00029 49.7 4.6 53 755-809 928-997 (1419)
183 cd08183 Fe-ADH2 Iron-containin 54.7 23 0.0005 41.0 6.0 71 691-775 23-94 (374)
184 cd08189 Fe-ADH5 Iron-containin 54.7 22 0.00048 41.1 5.9 76 690-775 26-102 (374)
185 cd01531 Acr2p Eukaryotic arsen 54.3 45 0.00098 31.5 7.0 78 275-368 4-83 (113)
186 cd00764 Eukaryotic_PFK Phospho 54.0 12 0.00025 47.7 3.8 54 754-809 477-546 (762)
187 cd01743 GATase1_Anthranilate_S 53.3 12 0.00026 38.7 3.1 36 754-789 41-81 (184)
188 cd08180 PDD 1,3-propanediol de 53.0 22 0.00047 40.4 5.4 87 690-787 22-117 (332)
189 PRK05670 anthranilate synthase 52.8 19 0.00041 37.5 4.6 66 706-789 11-82 (189)
190 cd01532 4RHOD_Repeat_1 Member 52.4 37 0.0008 31.0 5.9 15 346-361 49-63 (92)
191 PRK15454 ethanol dehydrogenase 52.1 16 0.00034 42.9 4.2 77 690-775 49-125 (395)
192 cd08191 HHD 6-hydroxyhexanoate 51.9 23 0.00049 41.3 5.4 88 691-787 23-129 (386)
193 PF04343 DUF488: Protein of un 51.7 22 0.00049 34.6 4.6 46 280-325 6-53 (122)
194 PRK06203 aroB 3-dehydroquinate 51.0 31 0.00066 40.6 6.3 33 754-787 110-145 (389)
195 TIGR03167 tRNA_sel_U_synt tRNA 50.6 28 0.00061 39.8 5.8 24 349-374 76-100 (311)
196 PRK09423 gldA glycerol dehydro 50.1 26 0.00056 40.4 5.5 85 691-787 30-116 (366)
197 PF13685 Fe-ADH_2: Iron-contai 49.9 53 0.0011 36.6 7.6 89 689-795 18-117 (250)
198 PRK07053 glutamine amidotransf 49.9 48 0.001 36.2 7.2 80 690-789 2-93 (234)
199 PRK11493 sseA 3-mercaptopyruva 49.8 70 0.0015 35.6 8.6 97 275-375 7-114 (281)
200 cd08549 G1PDH_related Glycerol 49.7 31 0.00067 39.4 6.0 86 691-787 25-112 (332)
201 PF04179 Init_tRNA_PT: Initiat 49.7 53 0.0012 39.6 8.1 74 286-368 317-397 (451)
202 cd00158 RHOD Rhodanese Homolog 49.3 41 0.0009 29.3 5.5 27 345-373 48-74 (89)
203 cd08190 HOT Hydroxyacid-oxoaci 49.2 18 0.00039 42.6 4.1 75 691-775 24-99 (414)
204 COG2897 SseA Rhodanese-related 48.8 72 0.0016 36.3 8.5 93 276-371 159-257 (285)
205 cd03174 DRE_TIM_metallolyase D 48.8 1E+02 0.0022 33.2 9.6 95 278-374 119-216 (265)
206 CHL00101 trpG anthranilate syn 47.2 17 0.00037 38.1 3.2 35 755-789 43-82 (190)
207 TIGR00337 PyrG CTP synthase. C 46.2 48 0.001 40.7 7.1 85 691-789 290-382 (525)
208 PRK10310 PTS system galactitol 46.0 1.5E+02 0.0033 28.0 9.0 90 691-811 3-94 (94)
209 PF02126 PTE: Phosphotriestera 45.7 30 0.00066 39.5 5.1 99 278-379 42-186 (308)
210 PRK09629 bifunctional thiosulf 45.4 75 0.0016 39.7 8.7 44 330-375 206-249 (610)
211 PRK07649 para-aminobenzoate/an 45.0 34 0.00074 36.3 5.0 34 755-789 43-82 (195)
212 cd08172 GlyDH-like1 Glycerol d 44.9 38 0.00082 38.8 5.8 83 691-787 24-108 (347)
213 PRK00843 egsA NAD(P)-dependent 44.8 58 0.0013 37.5 7.2 82 691-787 35-119 (350)
214 TIGR02478 6PF1K_euk 6-phosphof 44.5 18 0.00039 46.0 3.4 54 754-809 93-178 (745)
215 PRK11366 puuD gamma-glutamyl-g 44.3 50 0.0011 36.5 6.4 67 708-789 29-117 (254)
216 KOG1115 Ceramide kinase [Lipid 44.1 22 0.00048 42.1 3.7 75 688-772 156-234 (516)
217 KOG0782 Predicted diacylglycer 44.0 62 0.0013 39.8 7.3 64 758-829 419-496 (1004)
218 KOG4228 Protein tyrosine phosp 43.5 13 0.00028 48.5 1.8 93 113-208 680-798 (1087)
219 PTZ00468 phosphofructokinase f 43.3 21 0.00045 47.6 3.7 33 754-786 195-232 (1328)
220 TIGR03405 Phn_Fe-ADH phosphona 43.1 30 0.00065 39.8 4.6 76 691-775 24-99 (355)
221 cd07943 DRE_TIM_HOA 4-hydroxy- 42.0 1.6E+02 0.0036 32.4 9.9 81 277-358 115-196 (263)
222 cd08197 DOIS 2-deoxy-scyllo-in 41.6 50 0.0011 38.3 6.1 87 690-787 23-118 (355)
223 PRK15378 inositol phosphate ph 41.5 28 0.00062 42.0 4.1 19 351-369 460-479 (564)
224 PF06283 ThuA: Trehalose utili 41.2 88 0.0019 33.2 7.5 98 692-813 1-109 (217)
225 PF05925 IpgD: Enterobacterial 40.9 9.1 0.0002 46.3 0.0 20 346-365 452-471 (559)
226 PRK13805 bifunctional acetalde 40.6 44 0.00096 43.1 6.0 77 690-775 480-558 (862)
227 cd08199 EEVS 2-epi-5-epi-valio 40.4 60 0.0013 37.7 6.5 93 688-787 24-122 (354)
228 cd03132 GATase1_catalase Type 40.4 1.2E+02 0.0025 29.8 7.7 35 755-789 62-105 (142)
229 cd07939 DRE_TIM_NifV Streptomy 39.3 2.1E+02 0.0046 31.5 10.2 94 280-375 116-209 (259)
230 PRK11574 oxidative-stress-resi 38.8 1E+02 0.0022 32.0 7.4 38 754-791 65-111 (196)
231 PRK06490 glutamine amidotransf 38.7 61 0.0013 35.6 5.9 36 754-789 51-96 (239)
232 PRK09875 putative hydrolase; P 38.5 1.5E+02 0.0033 33.7 9.2 44 276-321 36-79 (292)
233 TIGR03217 4OH_2_O_val_ald 4-hy 38.4 2E+02 0.0044 33.3 10.3 82 276-358 116-199 (333)
234 cd00764 Eukaryotic_PFK Phospho 38.3 27 0.00059 44.5 3.5 54 754-809 96-181 (762)
235 PRK13566 anthranilate synthase 38.0 1E+02 0.0022 39.4 8.4 79 689-789 525-608 (720)
236 PF00465 Fe-ADH: Iron-containi 37.6 21 0.00045 41.0 2.2 77 691-776 22-98 (366)
237 cd07944 DRE_TIM_HOA_like 4-hyd 37.4 2E+02 0.0043 32.1 9.7 86 279-368 114-201 (266)
238 cd08188 Fe-ADH4 Iron-containin 36.9 35 0.00076 39.6 3.9 76 690-775 28-104 (377)
239 COG2012 RPB5 DNA-directed RNA 33.9 11 0.00024 35.1 -0.6 18 77-94 36-63 (80)
240 cd01744 GATase1_CPSase Small c 33.3 38 0.00083 35.0 3.2 35 755-789 39-79 (178)
241 PRK08195 4-hyroxy-2-oxovalerat 32.7 2.7E+02 0.0058 32.3 10.1 82 276-358 117-200 (337)
242 KOG1116 Sphingosine kinase, in 32.2 67 0.0015 39.7 5.3 86 688-788 177-276 (579)
243 PRK05380 pyrG CTP synthetase; 31.9 1E+02 0.0022 38.0 6.8 37 752-788 340-381 (533)
244 PRK11858 aksA trans-homoaconit 30.6 3.5E+02 0.0075 31.8 10.7 79 279-358 121-199 (378)
245 PRK11493 sseA 3-mercaptopyruva 30.4 69 0.0015 35.6 4.8 43 331-375 215-257 (281)
246 COG1819 Glycosyl transferases, 30.3 2.3E+02 0.005 33.5 9.2 60 749-812 294-369 (406)
247 PRK07567 glutamine amidotransf 30.2 41 0.00089 36.9 2.9 36 754-789 50-103 (242)
248 cd01535 4RHOD_Repeat_4 Member 29.8 2E+02 0.0044 29.0 7.6 34 333-369 37-70 (145)
249 PF07899 Frigida: Frigida-like 29.5 52 0.0011 37.4 3.6 102 94-226 148-249 (290)
250 COG4069 Uncharacterized protei 28.7 47 0.001 38.0 3.0 37 751-788 262-298 (367)
251 cd08198 DHQS-like2 Dehydroquin 28.5 1.1E+02 0.0024 36.0 6.1 33 754-787 98-133 (369)
252 cd01746 GATase1_CTP_Synthase T 28.4 1.1E+02 0.0024 33.6 5.8 37 753-789 53-94 (235)
253 PRK09389 (R)-citramalate synth 28.3 3.4E+02 0.0074 33.1 10.4 78 280-358 120-197 (488)
254 PRK10586 putative oxidoreducta 28.0 64 0.0014 37.5 4.1 41 754-795 85-128 (362)
255 cd07940 DRE_TIM_IPMS 2-isoprop 27.7 3.8E+02 0.0082 29.7 9.9 78 280-358 120-200 (268)
256 PF00117 GATase: Glutamine ami 27.4 27 0.0006 35.9 0.9 37 753-789 40-82 (192)
257 TIGR02090 LEU1_arch isopropylm 26.8 4.5E+02 0.0098 30.7 10.7 80 278-358 116-195 (363)
258 TIGR02660 nifV_homocitr homoci 26.7 4.1E+02 0.0089 31.0 10.3 78 280-358 119-196 (365)
259 cd08196 DHQS-like1 Dehydroquin 26.5 1.2E+02 0.0026 35.2 6.0 77 691-776 20-96 (346)
260 PRK08857 para-aminobenzoate sy 26.3 70 0.0015 33.6 3.7 34 755-789 43-82 (193)
261 PRK09393 ftrA transcriptional 26.2 1.4E+02 0.0031 33.5 6.4 37 753-789 73-116 (322)
262 PRK09065 glutamine amidotransf 26.0 56 0.0012 35.7 3.0 36 754-789 53-98 (237)
263 PRK08250 glutamine amidotransf 25.8 62 0.0013 35.3 3.3 36 754-789 44-94 (235)
264 KOG4667 Predicted esterase [Li 25.8 34 0.00073 37.9 1.3 42 118-172 195-242 (269)
265 PRK12564 carbamoyl phosphate s 25.2 1E+02 0.0022 36.1 5.1 35 755-789 218-258 (360)
266 cd01745 GATase1_2 Subgroup of 25.1 1E+02 0.0022 32.3 4.7 36 754-789 52-110 (189)
267 PRK14042 pyruvate carboxylase 24.0 6.7E+02 0.015 31.6 11.9 91 267-358 110-208 (596)
268 COG1370 Prefoldin, molecular c 23.9 2.4E+02 0.0052 29.6 6.8 113 845-963 29-153 (155)
269 TIGR01815 TrpE-clade3 anthrani 23.7 55 0.0012 41.6 2.7 78 690-789 516-598 (717)
270 PRK09629 bifunctional thiosulf 23.6 3E+02 0.0065 34.5 9.0 89 275-375 11-108 (610)
271 COG1054 Predicted sulfurtransf 23.6 3.1E+02 0.0067 31.7 8.2 80 271-370 111-194 (308)
272 cd07948 DRE_TIM_HCS Saccharomy 23.4 4.8E+02 0.01 29.2 9.7 76 281-358 119-195 (262)
273 KOG1510 RNA polymerase II holo 23.2 98 0.0021 31.8 3.8 83 74-157 28-116 (139)
274 cd08550 GlyDH-like Glycerol_de 23.0 77 0.0017 36.3 3.6 33 754-787 76-109 (349)
275 cd03784 GT1_Gtf_like This fami 23.0 1.1E+02 0.0024 34.8 4.9 59 748-810 297-371 (401)
276 TIGR01426 MGT glycosyltransfer 22.8 82 0.0018 36.0 3.7 34 750-787 286-319 (392)
277 cd03128 GAT_1 Type 1 glutamine 22.7 95 0.0021 25.5 3.2 38 753-790 44-90 (92)
278 PF00682 HMGL-like: HMGL-like 22.2 3.3E+02 0.0071 29.2 7.9 79 279-358 113-192 (237)
279 PRK13527 glutamine amidotransf 22.0 62 0.0014 34.1 2.4 36 754-789 42-87 (200)
280 PRK00915 2-isopropylmalate syn 21.8 5.8E+02 0.013 31.3 10.7 80 278-358 124-207 (513)
281 cd01742 GATase1_GMP_Synthase T 21.7 53 0.0011 33.6 1.7 37 753-789 39-80 (181)
282 TIGR00888 guaA_Nterm GMP synth 21.5 64 0.0014 33.5 2.3 34 756-789 42-80 (188)
283 cd08174 G1PDH-like Glycerol-1- 21.5 96 0.0021 35.2 3.9 32 755-787 75-107 (331)
284 COG1570 XseA Exonuclease VII, 20.9 3.5E+02 0.0076 32.8 8.4 96 687-801 132-243 (440)
285 PRK05597 molybdopterin biosynt 20.9 1.3E+02 0.0028 35.0 4.8 28 346-375 313-340 (355)
286 COG0693 ThiJ Putative intracel 20.5 3.3E+02 0.0071 28.0 7.3 39 754-792 65-112 (188)
287 TIGR01823 PabB-fungal aminodeo 20.2 2.6E+02 0.0057 35.9 7.6 36 754-789 52-96 (742)
No 1
>PLN02727 NAD kinase
Probab=100.00 E-value=2.1e-249 Score=2168.41 Aligned_cols=970 Identities=74% Similarity=1.121 Sum_probs=912.1
Q ss_pred cccCCCCccccccc---cccccCCcceEeeeeeEeeccchhhh-hccceEEEEeeeccccccccCCcccccccCCCCCCC
Q 001898 7 MQRLSSPATGILCS---SKLHNNETKLWGFGFRFKLQRRNESV-RRRVKLVVSAELSKSFSLNLGLDSQVIQSNDPSQLP 82 (998)
Q Consensus 7 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (998)
|.|+ +|+|||++. ++++++++||+||||||. |++.+ ||++||||+||||++||++||||||+||+||+||||
T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (986)
T PLN02727 1 MARL-SPVTGILSSCLCSVKLNSDGKLLGFGFGFW---QRKEPLKRRLKFVVSAELSKSFSSNLGLDSQNFQSRDLSQLP 76 (986)
T ss_pred CCCC-CCccccccccccceeeccccceeccchhhh---hccHHHHhhhhheehhhhhhccccccCcccccccccchhcCc
Confidence 6788 999999743 999999999999999995 55566 999999999999999999999999999999999999
Q ss_pred ccCCCCCchhhhhhhhhhhHHHHHHHHHHHHhhcCCCccceeeeeccCCCCCCCcccceeechhhHHHhhccCCcccccc
Q 001898 83 WIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSG 162 (998)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ec~v~~~~~~~~~~~led~ii~~~~~~~~~ln~g~~~v~s~ 162 (998)
||||||||||||||||||||+|||||+|||+|||||+||||+|+|||++||+|.|||||+++||||+++||+||.|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 156 (986)
T PLN02727 77 WIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECPVSYDFTSEEKPLLEDKIVSVLGCMLSLLNKGREEVLSG 156 (986)
T ss_pred cccCCCccHHHHhhhhhHHHHHHHHHHHHHHHhcCcccccccccccCCccccchhhhhHHHHHHHHHHHHhcchhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccCCccccchhhhhhhhhHHHHHHHhccCCCCCchhHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 001898 163 RSSIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIH 242 (998)
Q Consensus 163 ~~~~~~~f~~~~~~~~~~~~p~l~l~r~~~~~~~~~~~~~l~~yl~p~~~~~~~v~rkLqR~~~~~~d~g~Pr~~g~p~~ 242 (998)
|+++|++|+++|++.||+++||||+||.+||+|||+||++|++||+|+++|+++||||||||+|+|||.||||.+||||+
T Consensus 157 r~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~pr~~~~p~~ 236 (986)
T PLN02727 157 RSSIMSSFRGSEVSAMEDKLPPLAIFRGEMKRCCESLHVALENYLTPDDDRSLDVWRKLQRLKNVCYDAGFPRSDDYPCH 236 (986)
T ss_pred chhhhhhcccchhhhhhccCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHhhhhhcCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeccCCcccccCCCCcceEEEcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEE
Q 001898 243 TLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKI 322 (998)
Q Consensus 243 t~i~Nfr~V~~~~s~d~~~~~~~~~~LYRSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhI 322 (998)
+.|+||.+|+++++++|+..++.+..+|||+||+++++++|++.|||||||||++.++...+.+.++++++..|++|+|+
T Consensus 237 ~~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhI 316 (986)
T PLN02727 237 TLFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKI 316 (986)
T ss_pred ccccccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999987434445556788899999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHHhhccccccccchhhhhhhhhc
Q 001898 323 PVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKA 402 (998)
Q Consensus 323 PV~d~~~ps~e~v~~flelL~d~~~~PVLVHCtAGKDRTG~vvaLll~llGVs~ddIlaDYL~SN~~~~~~~~~~~~~~~ 402 (998)
|+.+...|+.+++.+|++++++..++|||+||++|.||||+|++||+.++-...+ ...-+++.
T Consensus 317 PVs~~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~-----------------~~~~~~~~ 379 (986)
T PLN02727 317 PVEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAE-----------------RLLGQNSV 379 (986)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHHHHHHHcccch-----------------hhhccccc
Confidence 9988899999999999999965678999999999999999999999986433221 11123355
Q ss_pred ccccchhhhcccchhcchhhhcccCccccccccccccccccCCCcccc-cccccccccchhhccccCccccccccccCCc
Q 001898 403 SAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKG-LSSVEGVESAKEVDTAVGSLGTTFSKETDPF 481 (998)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (998)
..+...+.+++|++++.+|+++++|+.++..++..+++++++++++|| +.++|++...+++. +++++++||++|+|||
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 458 (986)
T PLN02727 380 VNGNGKLDQETGSLQETNDKDSSSNGSESGESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVG-TGVESQSNFNMESDPL 458 (986)
T ss_pred cccCcccccccCccccccccccccCcccccccccccccccccccccccccccccccccccccc-ccccccceeeeecCcc
Confidence 666777889999999999999999999999999999999999999999 99999999999999 8889999999999999
Q ss_pred cccCCCCcccchHHHhhhhhccccCCCccccccccccccCC----------ccccCCCCCcccccccccccccCCCCCCC
Q 001898 482 KAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLP----------SEIVSSGPVSGVAETRYSQWSLSGNNLSP 551 (998)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (998)
|||+||||||||+||++|||+||++||+|+|||+|+|++|| ++|.+.++++||+|++++|+++++++.++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~sng~~s~kn~s~ 538 (986)
T PLN02727 459 KAQVPPCDVFSKKEMSKFFRSKKIYPPTYLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSSP 538 (986)
T ss_pred cccCCCcccccHHHHHHHHhhcccCCcccccchhcccccCCccccccccchhhccCccchhhhhhccCCCccccccccCc
Confidence 99999999999999999999999999999999999999998 88999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCCCCccccCCccCccccCCCcccccccccccccccccccccccccccccccCCCCCCCCCCCCC-cc
Q 001898 552 NHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVISSSVRDVQRSNGKPSNSGDDDLG-PI 630 (998)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 630 (998)
+.|++.+.+.|.+||+.+.|+|++.+.++.+.+..|++.+.+++|+++++.++++++.++.+++|+++++..+||++ +|
T Consensus 539 d~qss~~~~~k~sNGss~~s~~s~s~~Ss~~~~~~~~ng~~stsv~~nl~~~v~s~s~res~s~Ng~a~vgssd~~~~~~ 618 (986)
T PLN02727 539 KYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGASSSTVSDNLERSVASVSVRESQRSNGKASLGSSDDELGAI 618 (986)
T ss_pred cccchhhccccCCCCccccccCcccccccccCCccccCCCccccccCCCcccccccccccccccCCccccccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccccccccCCeeeeecccccceeEeeecCcceeeeeecCCCccccCCchhhHhcccccCCCEEEEEecCChhHHHHHHHH
Q 001898 631 VGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEV 710 (998)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~s~~~~~~ps~~~~~l~w~~~pk~VlIv~K~~~~~~~~a~~l 710 (998)
|||||||+||+||||+|||++||++||||||||||.+++|+++|+|||+||++|+|.++|++|+||+|+++++.+.+.+|
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~c~~~~~~~~~~~~~~~s~~~~~l~W~~p~rtVgIV~K~~~ea~~~~~eL 698 (986)
T PLN02727 619 EGNMCASATGVVRVQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELMEEAKEV 698 (986)
T ss_pred cccccccccccEEeeccCCcceEEEEecCcceeehhhccccccccCcchhceeeecCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred HHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCCC
Q 001898 711 ASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSL 790 (998)
Q Consensus 711 ~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINlG~L 790 (998)
++||.+++|++|++|++.++.+...+.++....++..+..++.+++|+||+||||||||+|+|++....+||||||+|+|
T Consensus 699 ~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlGrL 778 (986)
T PLN02727 699 ASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSL 778 (986)
T ss_pred HHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 99998767999999999887664455543344444444456667899999999999999999999999999999999999
Q ss_pred cccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceeeeEEEecCCCCeeEEEEEEECCEEe
Q 001898 791 GFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 870 (998)
Q Consensus 791 GFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALNDVvI~Rg~~~~~~~i~V~IDge~v 870 (998)
|||++++++++++.|+++++|+|.++++++++||+|+|++.++|+.+....++|||||+|.|+..++|+.++|||||+++
T Consensus 779 GFLTdi~~ee~~~~L~~Il~G~y~i~~~~ie~R~~L~~~V~r~g~~i~~~~~~ALNEVVI~Rg~~~~mi~ieVyIDg~~l 858 (986)
T PLN02727 779 GFLTSHYFEDFRQDLRQVIHGNNTLDGVYITLRMRLRCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 858 (986)
T ss_pred cccccCCHHHHHHHHHHHHcCCccccccccceeeEEEEEEecCCcccccccceEEEEEEEecCCCccEEEEEEEECCEEe
Confidence 99999999999999999999998766677899999999999888765433468999999999999999999999999999
Q ss_pred eeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCCEEEEEEcCCCCccEEEEEcCcccc
Q 001898 871 TKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQ 950 (998)
Q Consensus 871 ~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s~I~I~v~~~~r~~~~vsiDG~~~~ 950 (998)
++|+||||||||||||||||||||||||||++++|+|||||||+|++||||||++++|+|++....+..++|++||+...
T Consensus 859 ~tyrgDGLIVSTPTGSTAYSLSAGGPIVhP~v~aIvITPIcPHSLs~RPIVLp~ds~I~IkI~~~sr~~a~Ls~DGq~~~ 938 (986)
T PLN02727 859 TKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQ 938 (986)
T ss_pred EEeecceEEEECCCchHHhHhhcCCceeCCCCCeEEEEecCcccCCCCCEEECCCCeEEEEEccCCCCceEEEECCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999765545789999999999
Q ss_pred ccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCCCccCCCCC
Q 001898 951 QLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERLDQKAL 998 (998)
Q Consensus 951 ~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~R~~Qk~l 998 (998)
.|.+||+|.|++|++++++|+..++..+||++|++||+||+|.+||+|
T Consensus 939 ~L~~GD~I~Ir~S~~~v~lVr~~~~~~dFf~~LR~KL~W~~r~~Qk~l 986 (986)
T PLN02727 939 QLSRGDSVRISMSQHPLPTVNKSDQTGDWFRSLIRCLNWNERLDQKAL 986 (986)
T ss_pred ecCCCCEEEEEECCceEEEEEeCCCCCCHHHHHHHHhCCCcccccCCC
Confidence 999999999999999999998876556899999999999999999997
No 2
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-74 Score=630.49 Aligned_cols=332 Identities=49% Similarity=0.836 Sum_probs=287.8
Q ss_pred ceeeeeecCCCccccC-CchhhHhcccccCCCEEEEEecCChhHHHHHHHHHHHHhcCC-CeEEEEcCChhhHh--hcC-
Q 001898 661 SCNREKVTESSLAFTH-PSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQE-KMNILVEPDVHDIF--ARI- 735 (998)
Q Consensus 661 ~c~~~~~~~s~~~~~~-ps~~~~~l~w~~~pk~VlIv~K~~~~~~~~a~~l~~~L~~~~-gi~V~ve~~~~~~~--~~~- 735 (998)
||+++... ......+ +...+|.++|-++|+.|+|.||.+.+..+..+++++||.... .+.|+++.++++.. ...
T Consensus 65 sn~~~~~~-~~~~~~~~~~~~s~~l~~~~p~~~~lv~K~~d~s~~~~~~Elv~~ll~~~~~i~V~v~~~~~~~~~f~~~~ 143 (409)
T KOG2178|consen 65 SNSRELMS-NVAAVRSIQKSLSQRLIWLKPPKNLLVTKKNDESVLEKFVELVEWLLQTFPNITVYVEDKVAKDKQFSAGN 143 (409)
T ss_pred ccchhhhh-hhhhhhhccchhhhchhccCCCceEEEEcCCcHHHHHHHHHHHHHHHhhCCCeEEEechhhhhhhhhcccc
Confidence 56665222 2223323 345667899999999988888887788899999999997654 69999999887632 110
Q ss_pred --CCCcc-ceeee--ccCcccccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHc
Q 001898 736 --PGFGF-VQTFY--LQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIY 810 (998)
Q Consensus 736 --~~~~~-~~~~~--~~~~~dl~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~ 810 (998)
+.++. ...+| .....++.+.+|+|||||||||+|+|+.+|++..|||+.|++|+|||||+|+++++++.|.++++
T Consensus 144 ~~e~~~~~~~i~y~~~e~~~d~~~~~D~iItLGGDGTvL~aS~LFq~~VPPV~sFslGslGFLtpf~f~~f~~~l~~v~~ 223 (409)
T KOG2178|consen 144 LDESFGVKERILYWTTEGCDDLPNRFDLIITLGGDGTVLYASSLFQRSVPPVLSFSLGSLGFLTPFPFANFQEQLARVLN 223 (409)
T ss_pred hhhcccchhceEeeccccccccccceeEEEEecCCccEEEehhhhcCCCCCeEEeecCCccccccccHHHHHHHHHHHhc
Confidence 01111 11122 22246778889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeeeeeEEEEEEEeCCeecC---CcccceeeeEEEecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChh
Q 001898 811 GNNTLDGVYITLRMRLCCEIFRNGKAMP---GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGST 887 (998)
Q Consensus 811 G~~~i~~~~i~~R~rL~~~V~r~G~~v~---~~~~~ALNDVvI~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGST 887 (998)
|+ .++.+||||+|+++|.++... ...+++||||+|+||.++.|+.+++|+||+++|+++|||||||||||||
T Consensus 224 ~~-----~~v~lR~RL~C~i~rk~~~~~~~~~~~~~vLNEvvIdRGpsP~ls~l~ly~d~~~iT~vq~DGliVaTPTGST 298 (409)
T KOG2178|consen 224 GR-----AAVNLRMRLRCSLKRKDLAEKTHAASSHYVLNEVVIDRGPSPFLSNLDLYVDDKLITKVQGDGLIVATPTGST 298 (409)
T ss_pred Cc-----ceEeeeeeEEEEEEEecccccccccceEEEeeeEEEccCCCchhcceeEEecCcEEEEEecceEEEecCCchh
Confidence 98 468999999999998654421 1268999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCCEEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCcee
Q 001898 888 AYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPI 967 (998)
Q Consensus 888 AYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l 967 (998)
|||+|||||||||+++||++||||||+|+|||||+|++.+++|+++.++|..+|+++||+.+.+|..||.|.|+.|.+++
T Consensus 299 AYS~sAGGSlvhP~vpAIlvTPICPhSLSFRPIIlPds~~L~I~i~~dsR~~awvSfDG~~r~El~~GD~i~I~tS~ypf 378 (409)
T KOG2178|consen 299 AYSASAGGSLVHPSVPAILVTPICPHSLSFRPIILPDSSELRVEVPLDSRSTAWVSFDGRPRQELSLGDYIDITTSRYPF 378 (409)
T ss_pred hhHhhcCCceecCCCCeEEEeccCCCcccccceEccCccEEEEEeCccccccceEEecCcchhhccCCceEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCchHHHHhhhcCCCCccCCCCC
Q 001898 968 PTVNKSDQTGDWFHSLVRCLNWNERLDQKAL 998 (998)
Q Consensus 968 ~lV~~~~~~~d~f~~Lr~KL~Wg~R~~Qk~l 998 (998)
++|+..++..|||++|.++|+||.|++||+|
T Consensus 379 Pti~~s~~~~dWf~sl~~~L~WN~r~rqk~~ 409 (409)
T KOG2178|consen 379 PTIISSDEESDWFESLARLLNWNVRKRQKPF 409 (409)
T ss_pred ceeecCcchhhHHHHHHHHcCCCchhhccCC
Confidence 9999998889999999999999999999986
No 3
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=100.00 E-value=3.1e-70 Score=622.22 Aligned_cols=318 Identities=45% Similarity=0.796 Sum_probs=272.6
Q ss_pred cCCchhhHhcccccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcC-CCCccceeeec-cCccc
Q 001898 675 THPSTQQQMLMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARI-PGFGFVQTFYL-QDTSD 751 (998)
Q Consensus 675 ~~ps~~~~~l~w~~~pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~-~~~~~~~~~~~-~~~~d 751 (998)
+.+|++|..|.|.++|++|+||.|+.. ++.+.+.+|++||.+++|+.|++++..+..+... ...+....+.. ....+
T Consensus 179 ~~~~~~~~~l~w~~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 258 (508)
T PLN02935 179 AERSSKQISLKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILL 258 (508)
T ss_pred ccCCCceEEeeecCCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhh
Confidence 456788889999999999999999886 6778899999999745789999988765432110 00011110000 11122
Q ss_pred ccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEE
Q 001898 752 LHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIF 831 (998)
Q Consensus 752 l~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~ 831 (998)
+..++|+||+||||||||+|+|.+....+||||||+|+||||++++++++++.|+++++|+ |.++.|+||+|.|.
T Consensus 259 l~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G~LGFLt~i~~~e~~~~Le~il~G~-----y~Ie~R~~L~~~v~ 333 (508)
T PLN02935 259 LHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRDCLDAILKGP-----ISITLRHRLQCHII 333 (508)
T ss_pred cccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCCCcceecccCHHHHHHHHHHHHcCC-----ceEEEEeEEEEEEE
Confidence 4457999999999999999999999999999999999999999999999999999999998 56899999999998
Q ss_pred eCCeecC---CcccceeeeEEEecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeE
Q 001898 832 RNGKAMP---GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFT 908 (998)
Q Consensus 832 r~G~~v~---~~~~~ALNDVvI~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillT 908 (998)
++++... ...++|||||+|.|+..++|+.++|||||+++++|+||||||||||||||||||||||||||++++|+||
T Consensus 334 ~~~~~~~~~~~~~~~ALNEvvI~rg~~~~~i~l~V~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~l~~ivlT 413 (508)
T PLN02935 334 RDAAKNEYETEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFT 413 (508)
T ss_pred cCCceecccccccceeccceEEecCCCceEEEEEEEECCEeEEEEECCcEEEecCccHHHHHHhcCCcccCCCCCeEEEE
Confidence 7764321 0235799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCeEeCCCCEEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcC
Q 001898 909 PICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLN 988 (998)
Q Consensus 909 PIcPHsLs~RPIVlp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~ 988 (998)
|||||+|++||||||++++|+|++....+..+++++||+....|.+||.|.|++|+.++++|+..+...+||++|++||+
T Consensus 414 PIcPHsLs~RPIVlp~~s~I~I~v~~~~~~~a~lsiDGq~~~~L~~GD~V~I~kS~~~v~lV~l~~~~~~Ff~~Lr~KL~ 493 (508)
T PLN02935 414 PICPHSLSFRPLILPEYVTIRVQVPFNSRGQAWASFDGKDRKQLSAGDALVCSMAPWPVPTACQVESTNDFLRSIHDGLH 493 (508)
T ss_pred ecCCCcCCCCCeEECCCCEEEEEEccCCCCceEEEEcCCcceecCCCCEEEEEECCCceEEEeeCCCCCCHHHHHHHHcC
Confidence 99999999999999999999999875444568999999999999999999999999999999876545699999999999
Q ss_pred CCCccCCCC
Q 001898 989 WNERLDQKA 997 (998)
Q Consensus 989 Wg~R~~Qk~ 997 (998)
||.|.+|++
T Consensus 494 Wg~R~rq~~ 502 (508)
T PLN02935 494 WNLRKTQSF 502 (508)
T ss_pred CCccccccC
Confidence 999999985
No 4
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=6.8e-67 Score=571.78 Aligned_cols=295 Identities=26% Similarity=0.378 Sum_probs=255.4
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCc--c-ceeeeccCcccccCCccEEEEEcCCc
Q 001898 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFG--F-VQTFYLQDTSDLHERVDFVACLGGDG 766 (998)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~--~-~~~~~~~~~~dl~~~~DlVIvLGGDG 766 (998)
++|+|+.++.. ++.+.+.++.+||.+ .|++++++++.++.+. ..... . .......+..++.+++|++|+|||||
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG 79 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRASSSGGILG-YANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDG 79 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcC-ccccccccccccccccChhhcccCcCEEEEEeCcH
Confidence 57999999876 577889999999964 6899999876544331 11000 0 00000001134445789999999999
Q ss_pred hHHHHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceee
Q 001898 767 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 846 (998)
Q Consensus 767 TlL~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALN 846 (998)
|||+|+|.+...++||||||+|+||||+++++++++++|+++++|+ |.++.|+||+|++.++|+.+ ...+|||
T Consensus 80 TlL~aar~~~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~-----y~ie~r~~L~~~v~~~~~~~--~~~~ALN 152 (305)
T PRK02649 80 TVLSAARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQ-----YTIEERTMLTVSVMRGDQLR--WEALSLN 152 (305)
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCC-----cEEEEeeeEEEEEEECCcce--eeeeeee
Confidence 9999999999899999999999999999999999999999999998 56899999999998777543 2357999
Q ss_pred eEEEecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCC
Q 001898 847 EVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSA 926 (998)
Q Consensus 847 DVvI~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s 926 (998)
|++|.|+..++|++++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||||+|+++
T Consensus 153 evvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Phsl~~RplVlp~~~ 232 (305)
T PRK02649 153 EMVLHREPLTSMCHFEIAIGRHAPVDIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPICPHSLASRALVFSDSE 232 (305)
T ss_pred eeeeecCCCccEEEEEEEECCEEEEEEecCeEEEeCCCcHHHHHhhCCCcccCCCCCeEEEEecCcCCCCCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCCCccCCCCC
Q 001898 927 RLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERLDQKAL 998 (998)
Q Consensus 927 ~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~R~~Qk~l 998 (998)
+|+|++... ..+.+++||+....|.+||.|.|++|++++++++..+ .+||++||+||+||++..||||
T Consensus 233 ~I~i~~~~~--~~~~l~~DG~~~~~l~~gd~i~I~~s~~~~~lv~~~~--~~f~~~Lr~KL~wg~~~~~~~~ 300 (305)
T PRK02649 233 PVTVFPATP--ERLVMVVDGNAGCYVWPEDRVLIRRSPYPVRFIRLQD--PEFFRVLREKLGWGLPHIAKPT 300 (305)
T ss_pred EEEEEecCC--CcEEEEEecceeEecCCCCEEEEEECCCEEEEEEcCC--CCHHHHHHHHcCCCCCcccCCC
Confidence 999988642 4689999999999999999999999999999998765 4899999999999999999996
No 5
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=4.8e-66 Score=563.21 Aligned_cols=289 Identities=28% Similarity=0.535 Sum_probs=251.6
Q ss_pred ccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhh---Hhh-cCCCCccceeeeccCcccccCCccEEEE
Q 001898 687 KTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHD---IFA-RIPGFGFVQTFYLQDTSDLHERVDFVAC 761 (998)
Q Consensus 687 ~~~pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~---~~~-~~~~~~~~~~~~~~~~~dl~~~~DlVIv 761 (998)
.+++++|+|+.|+.. ++.+.+.++++||.+ +|++|++++.... .+. ...+. ...+..++.+++|+||+
T Consensus 2 ~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~D~vi~ 74 (296)
T PRK04539 2 NSPFHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDEVGIKEGCIYTQDTVGC------HIVNKTELGQYCDLVAV 74 (296)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecccccccchhccccccc------cccchhhcCcCCCEEEE
Confidence 456789999999876 567889999999964 6899999764321 110 00010 00112344557999999
Q ss_pred EcCCchHHHHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcc
Q 001898 762 LGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKV 841 (998)
Q Consensus 762 LGGDGTlL~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~ 841 (998)
||||||||+|+|.+...++||+|||+|+||||+++++++++++|+++++|+ |.+++|+||++++.++|+.+ ..
T Consensus 75 lGGDGT~L~aa~~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~-----~~~~~r~~l~~~v~~~~~~~--~~ 147 (296)
T PRK04539 75 LGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYMTDKLLPVLEGK-----YLAEERILIEAALIREGKTA--ER 147 (296)
T ss_pred ECCcHHHHHHHHHhcccCCCEEEEecCCCeEeeccCHHHHHHHHHHHHcCC-----ceEEEeeeEEEEEEECCeee--ee
Confidence 999999999999998889999999999999999999999999999999998 45799999999998887654 23
Q ss_pred cceeeeEEEecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeE
Q 001898 842 FDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVI 921 (998)
Q Consensus 842 ~~ALNDVvI~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIV 921 (998)
++||||++|.|+..++|++++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||+|
T Consensus 148 ~~ALNdvvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Phsl~~rplV 227 (296)
T PRK04539 148 ALALNDAVLSRGGAGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICPQSMTNRPIA 227 (296)
T ss_pred eeeehhhhhccCCcCceEEEEEEECCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEecCcCcccCCCEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCCCcc
Q 001898 922 LPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERL 993 (998)
Q Consensus 922 lp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~R~ 993 (998)
+|++++|+|++.. ...+.+++||+....+.+||+|.|++|++++++++..+ .+||++||+||+|+.++
T Consensus 228 l~~~~~i~i~~~~--~~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~li~~~~--~~f~~~Lr~KL~w~~~~ 295 (296)
T PRK04539 228 IPDTSEIEILVTQ--GGDARVHFDGQTHIDVQNLDRITIRRYRNPLRILHPTD--YQYFKTLRQKLHWGEQL 295 (296)
T ss_pred ECCCCEEEEEEcC--CCcEEEEEcCCceeecCCCCEEEEEECCCceEEEEcCC--CcHHHHHHHHhcCCccc
Confidence 9999999999864 24689999999999999999999999999999998765 48999999999999875
No 6
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.4e-65 Score=557.51 Aligned_cols=278 Identities=26% Similarity=0.501 Sum_probs=247.9
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH
Q 001898 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (998)
Q Consensus 689 ~pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTl 768 (998)
.+++|+|+.++.+++.+.++++++||.+ +|+++++++..+..+. ..++ ...++.+++|+||++||||||
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~Dlvi~iGGDGT~ 77 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSI-YKVEILLEKESAEILD-LPGY---------GLDELFKISDFLISLGGDGTL 77 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhc-cccc---------chhhcccCCCEEEEECCCHHH
Confidence 4689999999888778889999999964 6899999887654432 1111 113344578999999999999
Q ss_pred HHHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceeeeE
Q 001898 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (998)
Q Consensus 769 L~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALNDV 848 (998)
|+|+|.+...++||+|||+|+||||+++++++++++|+++++|+ |.+++|++|++++.++++.. ..++||||+
T Consensus 78 L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~-----y~ie~r~~L~~~v~~~~~~~--~~~~AlNev 150 (287)
T PRK14077 78 ISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGE-----FEIEKPYMLSVFLEKKQGKI--LEKLAFNDV 150 (287)
T ss_pred HHHHHHhcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCC-----CeEEEEEEEEEEEEeCCceE--EEEEEeeee
Confidence 99999999889999999999999999999999999999999998 45799999999988766433 235799999
Q ss_pred EEecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCCEE
Q 001898 849 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARL 928 (998)
Q Consensus 849 vI~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s~I 928 (998)
+|.|+..++|+++++++||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||+|+|++++|
T Consensus 151 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Phsl~~rpiVl~~~~~I 230 (287)
T PRK14077 151 VISKNNQASMAHIEAFLNEKYFNEYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTPVCSHSLTQRPIVLPKGFEV 230 (287)
T ss_pred eeccCCCccEEEEEEEECCEEEEEEEcCEEEEeCCCchhHhHhhcCCcccCCCCCeEEEEecccccccCCCEEECCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCC
Q 001898 929 ELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWN 990 (998)
Q Consensus 929 ~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg 990 (998)
+|++.. .+.+++||+....+++||+|.|++|+.++++++..+ .+||+.||+||+|+
T Consensus 231 ~i~~~~----~~~l~~DG~~~~~l~~~d~i~I~~s~~~~~lv~~~~--~~f~~~Lr~KL~w~ 286 (287)
T PRK14077 231 EFKTKS----DCILCIDGQDRYKMNDFKSIKVGLSDKNVALIRHKN--RDYFQILKEKLHWG 286 (287)
T ss_pred EEEECC----CEEEEEcCCeeEecCCCCEEEEEECCCEEEEEECCC--CCHHHHHHHHhCCC
Confidence 998642 589999999999999999999999999999998764 58999999999997
No 7
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=5e-65 Score=554.33 Aligned_cols=288 Identities=25% Similarity=0.458 Sum_probs=245.0
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeecc-CcccccCCccEEEEEcCCchHH
Q 001898 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGGDGVIL 769 (998)
Q Consensus 692 ~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~-~~~dl~~~~DlVIvLGGDGTlL 769 (998)
+|+|+.|+.. ++.+.++++++||.+ .|+++++++..++.+.....+. ...... +..++.+.+|+||+||||||||
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dlvi~lGGDGT~L 78 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEEKFLDFLKQDLKFH--PSYDTFSDNEELDGSADMVISIGGDGTFL 78 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhccccccc--cccccccchhhcccCCCEEEEECCcHHHH
Confidence 5899988775 677889999999964 6899999887654332100000 000000 1134445789999999999999
Q ss_pred HHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceeeeEE
Q 001898 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (998)
Q Consensus 770 ~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALNDVv 849 (998)
+|+|.+...++||||||+|+||||++++++++++.|+++++|+ |.++.|+||++++ +++... ..++|||||+
T Consensus 79 ~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~-----~~i~~r~~L~~~~--~~~~~~-~~~~alNdvv 150 (292)
T PRK01911 79 RTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGD-----YTIEERSLLQLES--NPKLFG-ELNFALNEIA 150 (292)
T ss_pred HHHHHhcCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHcCC-----ceEEEEeeEEEEE--cCCcce-eeeEEEEEEE
Confidence 9999999889999999999999999999999999999999998 4579999999985 333221 1357999999
Q ss_pred EecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCCEEE
Q 001898 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 929 (998)
Q Consensus 850 I~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s~I~ 929 (998)
|.|+..++|+.++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||+|+|++++|+
T Consensus 151 i~r~~~~~~i~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Ph~l~~RplVl~~~~~I~ 230 (292)
T PRK01911 151 ILKRDTSSMITVHTYLNGEYLNSYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVITPIAPHNLNVRPLVIPDDTEIT 230 (292)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEEEecccCccCCCCEEECCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCCCccC
Q 001898 930 LKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERLD 994 (998)
Q Consensus 930 I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~R~~ 994 (998)
|++.... ..+.+++||+. ..+.+||.|+|++|+.++++++..+ .+||+.||+||+|+++++
T Consensus 231 i~~~~~~-~~~~l~~DG~~-~~l~~gd~v~i~~s~~~~~lv~~~~--~~f~~~Lr~KL~w~~~~~ 291 (292)
T PRK01911 231 LEVESRS-DNFLVSLDSRS-ETVDNGTELTIKKADFTIKLVELNN--HSFLKTLRNKLLWGEDKR 291 (292)
T ss_pred EEEecCC-CceEEEEeCCe-eecCCCCEEEEEECCCeEEEEEeCC--CcHHHHHHHHcCCCCcCC
Confidence 9986432 45789999999 5999999999999999999998765 589999999999998765
No 8
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=9.7e-65 Score=554.85 Aligned_cols=293 Identities=28% Similarity=0.393 Sum_probs=252.1
Q ss_pred cCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhc-CCCC--ccceeeeccCcccccCCccEEEEEc
Q 001898 688 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFAR-IPGF--GFVQTFYLQDTSDLHERVDFVACLG 763 (998)
Q Consensus 688 ~~pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~-~~~~--~~~~~~~~~~~~dl~~~~DlVIvLG 763 (998)
+++++|+|+.|+.. ++.+.++++++||.+ +|++|++++..+..+.. .+.. +.....+. ...++.+++|+||+||
T Consensus 3 ~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~vi~lG 80 (306)
T PRK03372 3 TASRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLDAEAVDLGATHPAPDDFRAMEVVD-ADPDAADGCELVLVLG 80 (306)
T ss_pred CCccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEeechhhhhccccccccccccccccc-chhhcccCCCEEEEEc
Confidence 46789999999875 677889999999965 68999988765433211 0100 00000000 0123445789999999
Q ss_pred CCchHHHHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccc
Q 001898 764 GDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFD 843 (998)
Q Consensus 764 GDGTlL~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ 843 (998)
||||||+|+|.+...++||||||+|+||||+++++++++++|+++++|+ |.+++|+||++++.++|+.+ ...+
T Consensus 81 GDGT~L~aar~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~-----y~i~~R~~L~~~v~~~g~~~--~~~~ 153 (306)
T PRK03372 81 GDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRD-----YRVEERMTLDVTVRVGGEIV--WRGW 153 (306)
T ss_pred CCHHHHHHHHHhccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCC-----ceEEEeeeEEEEEEECCEEE--eeee
Confidence 9999999999999899999999999999999999999999999999998 55899999999998888754 2357
Q ss_pred eeeeEEEecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeC
Q 001898 844 VLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILP 923 (998)
Q Consensus 844 ALNDVvI~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp 923 (998)
||||++|.|+..++|++++|+|||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||+|+|
T Consensus 154 ALNdvvi~r~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Ph~l~~RplVv~ 233 (306)
T PRK03372 154 ALNEASLEKADREGMLEVVLEVDGRPVSSFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPLNAHALFARPLVVS 233 (306)
T ss_pred EEEeEEeecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEecccccCCCCCeEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCCCc
Q 001898 924 DSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNER 992 (998)
Q Consensus 924 ~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~R 992 (998)
++++|+|++.... ..+.+++||+....|.+||+|.|++|++++++++..+ .+||++||+||+|..-
T Consensus 234 ~~~~I~i~~~~~~-~~~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~~~--~~f~~~Lr~KL~~~~~ 299 (306)
T PRK03372 234 PTSTVAVEILADT-SDAVLWCDGRRSVDLPPGARVEVRRGATPVRLARLDS--APFTDRLVRKFRLPVT 299 (306)
T ss_pred CCCEEEEEEecCC-CcEEEEEcCCeeEecCCCCEEEEEECCCeEEEEEeCC--CCHHHHHHHHcCCCCC
Confidence 9999999987532 4689999999999999999999999999999998765 4899999999999853
No 9
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.6e-64 Score=550.46 Aligned_cols=287 Identities=26% Similarity=0.466 Sum_probs=251.4
Q ss_pred cCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCc
Q 001898 688 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (998)
Q Consensus 688 ~~pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDG 766 (998)
...++|+|+.|+.. ++.+.++++++||.+ +|++++++++.+..+. .... ...+..++.+++|+||+|||||
T Consensus 3 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~-~~~~------~~~~~~~~~~~~d~vi~lGGDG 74 (292)
T PRK03378 3 NHFKCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQQIAHELQ-LKNV------KTGTLAEIGQQADLAIVVGGDG 74 (292)
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcC-cccc------cccchhhcCCCCCEEEEECCcH
Confidence 34689999999876 577889999999964 6899999886544321 1100 0011234455799999999999
Q ss_pred hHHHHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceee
Q 001898 767 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 846 (998)
Q Consensus 767 TlL~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALN 846 (998)
|||+|+|.+...++||+|||+|+||||+++++++++++|+++++|+ |.+++|++|++++.++++.. ..++|||
T Consensus 75 T~L~aa~~~~~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~-----~~i~~r~~L~~~v~~~~~~~--~~~~aLN 147 (292)
T PRK03378 75 NMLGAARVLARYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGH-----YISEKRFLLEAQVCRHGQQK--RISTAIN 147 (292)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCC-----ceEEEEEEEEEEEEeCCceE--EeEEEEE
Confidence 9999999998889999999999999999999999999999999998 45899999999998776543 2467999
Q ss_pred eEEEecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCC
Q 001898 847 EVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSA 926 (998)
Q Consensus 847 DVvI~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s 926 (998)
|++|.++..++|+++++++||+++++|+|||+||||||||||||||||||||+|++++|++||||||+|++||+|+|+++
T Consensus 148 dvvi~~~~~~~~i~~~v~idg~~~~~~~~DGlIvsTptGSTAYslSAGGPii~P~~~~~~itPI~Phsl~~rplVl~~~~ 227 (292)
T PRK03378 148 EVVLHPGKVAHMIEFEVYIDDNFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVIDSSS 227 (292)
T ss_pred EEEEccCCCccEEEEEEEECCEEEEEEEccEEEEeCCCchHHhHhhcCCceeCCCCCeEEEEecccccCCCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCCCc
Q 001898 927 RLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNER 992 (998)
Q Consensus 927 ~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~R 992 (998)
+|+|++... ...+.+++||+....|++||+|.|++|++++++|+..+ .+||++||+||+|++.
T Consensus 228 ~i~i~~~~~-~~~~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~~~--~~f~~~Lr~KL~w~~~ 290 (292)
T PRK03378 228 TIRLKFSPN-RSDLEISCDSQIALPIQPGEEVLIRRSDYHLNLIHPKD--YSYFNTLRTKLGWSKK 290 (292)
T ss_pred EEEEEEccC-CCcEEEEECCceEEEcCCCcEEEEEECCCEEEEEEcCC--CCHHHHHHHHcCCCCC
Confidence 999998752 35689999999999999999999999999999998765 4899999999999954
No 10
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.5e-63 Score=537.68 Aligned_cols=269 Identities=27% Similarity=0.490 Sum_probs=235.6
Q ss_pred HHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEe
Q 001898 707 AKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFN 786 (998)
Q Consensus 707 a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN 786 (998)
++++++||.+ +|+.++++++.+..+. ... ....+..++.+++|+||++|||||||+|+|.+...++||+|||
T Consensus 2 ~~~l~~~l~~-~g~~v~~~~~~~~~~~-~~~------~~~~~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 2 HKNLFHWLKE-RGYQVLVEKEIAEQLN-LPE------NHLASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred HHHHHHHHHH-CCCEEEEecchhhhcC-ccc------cccCChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 5789999964 6899999886544321 110 0001113445578999999999999999999988899999999
Q ss_pred CCCCcccCCCCcccHHHHHHHHHc-cCCCCCceeeeeeeEEEEEEEeCCeecCCcccceeeeEEEecCCCCeeEEEEEEE
Q 001898 787 LGSLGFLTSHPFEDYRQDLRQVIY-GNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYE 865 (998)
Q Consensus 787 lG~LGFLt~~~~eel~~~L~~il~-G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALNDVvI~Rg~~~~~~~i~V~I 865 (998)
+|+||||++++++++.+.|+++++ |+ |.+++|+||++++.++|+.+. .++||||++|.++..++|++++++|
T Consensus 74 ~G~lGFL~~~~~~~~~~~l~~~~~~g~-----~~i~~r~~L~~~v~~~~~~~~--~~~alNev~i~~~~~~~~~~~~v~i 146 (272)
T PRK02231 74 RGNLGFLTDIDPKNAYEQLEACLERGE-----FFVEERFLLEAKIERNGKIIA--TSNALNEVVIHPAKIAHMIDFHVYI 146 (272)
T ss_pred CCCCcccccCCHHHHHHHHHHHHhcCC-----ceEEEeeeEEEEEEECCeEee--eeEEEEEEEEecCCCCceEEEEEEE
Confidence 999999999999999999999998 87 568999999999887776542 3579999999999999999999999
Q ss_pred CCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCCEEEEEEcCCCCccEEEEEc
Q 001898 866 HDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFD 945 (998)
Q Consensus 866 Dge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s~I~I~v~~~~r~~~~vsiD 945 (998)
||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||||+|++++|+|++.......+.+++|
T Consensus 147 ~~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~Phsl~~RpiVl~~~~~I~i~~~~~~~~~~~l~~D 226 (272)
T PRK02231 147 DDKFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPNLNAIALVPMFPHTLSSRPLVIDGDSKISLRFAEYNTPQLEVSCD 226 (272)
T ss_pred CCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEeccccccCCCCEEECCCCEEEEEEcCCCCccEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986533345889999
Q ss_pred CccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCCCc
Q 001898 946 GKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNER 992 (998)
Q Consensus 946 G~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~R 992 (998)
|+....+++||+|+|++|++++++++..+ .+||++|++||+|++.
T Consensus 227 G~~~~~l~~~d~v~I~~s~~~~~lv~~~~--~~f~~~Lr~KL~w~~~ 271 (272)
T PRK02231 227 SQIALPFTPDDRVHVQKSPDKLRLLHLKN--YNYYNVLSSKLGWLKK 271 (272)
T ss_pred CCeEEEeCCCcEEEEEEcCCEEEEEEcCC--CCHHHHHHHHhCCCCC
Confidence 99999999999999999999999998765 5899999999999954
No 11
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=8e-63 Score=537.91 Aligned_cols=287 Identities=28% Similarity=0.526 Sum_probs=250.3
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTl 768 (998)
.++|+|+.++.. .+.+.++++.+||.+ +++++++++...+.+... ... .....++.+.+|+||++|||||+
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~~~~~~~~~~-~~~------~~~~~~~~~~~d~vi~~GGDGt~ 75 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDEETAEVLPGH-GLQ------TVSRKLLGEVCDLVIVVGGDGSL 75 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcc-ccc------ccchhhcccCCCEEEEEeCcHHH
Confidence 568999999876 567789999999965 689999987654322110 000 01112344578999999999999
Q ss_pred HHHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceeeeE
Q 001898 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (998)
Q Consensus 769 L~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALNDV 848 (998)
|++++.+....+||+|||+|+||||+++++++++++|+++++|+ |.++.|+||++++.++|+.+ ..++||||+
T Consensus 76 l~~~~~~~~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~-----~~i~~r~~L~~~v~~~~~~~--~~~~ALNev 148 (295)
T PRK01231 76 LGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGH-----YQEEERFLLEAEVRRGGEVI--GQGDALNDV 148 (295)
T ss_pred HHHHHHhcCCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCC-----ceEEEEEEEEEEEEECCcEE--eeeeEEEEE
Confidence 99999998889999999999999999999999999999999998 45799999999998777654 235799999
Q ss_pred EEecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCCEE
Q 001898 849 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARL 928 (998)
Q Consensus 849 vI~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s~I 928 (998)
+|.++..++|++++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||||+|++++|
T Consensus 149 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlivsTptGSTAY~lSAGGpIv~p~~~~~~itPI~ph~l~~rpiVl~~~~~I 228 (295)
T PRK01231 149 VLHPGKSTRMIEFELYIDGQFVCSQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMFPHTLSSRPIVVDGNSEI 228 (295)
T ss_pred EEccCCCCcEEEEEEEECCEEEEEEEcceEEEeCCCCchhhhhhcCCceecCCCCeEEEEecCCCccCCCCEEECCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCCCcc
Q 001898 929 ELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERL 993 (998)
Q Consensus 929 ~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~R~ 993 (998)
+|++....+..+.+++||+....+.+||.|.|++|+.+++++...+ .+||++|++||+|+.+.
T Consensus 229 ~i~~~~~~~~~~~l~~DG~~~~~l~~g~~i~i~~s~~~~~l~~~~~--~~f~~~l~~KL~w~~~~ 291 (295)
T PRK01231 229 KIVISKDNRTYPRVSCDGQNSVTLAPGDTVTIRKKPQKLRLIHPLD--YNYYETCRTKLGWGSRL 291 (295)
T ss_pred EEEEccCCCCceEEEeCCCceEecCCCCEEEEEECCCeEEEEEcCC--CCHHHHHHHhcCCCCCc
Confidence 9998754445689999999999999999999999999999998765 48999999999999875
No 12
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=100.00 E-value=1.3e-62 Score=535.43 Aligned_cols=285 Identities=30% Similarity=0.532 Sum_probs=249.4
Q ss_pred cCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCc
Q 001898 688 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (998)
Q Consensus 688 ~~pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDG 766 (998)
+.+++|+|+.|... ++.+.+.++++||.+ .+++++++......... ..+. ..+..++.+.+|+||++||||
T Consensus 3 ~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~-~g~~v~v~~~~~~~~~~-~~~~------~~~~~~~~~~~d~vi~~GGDG 74 (291)
T PRK02155 3 SQFKTVALIGRYQTPGIAEPLESLAAFLAK-RGFEVVFEADTARNIGL-TGYP------ALTPEEIGARADLAVVLGGDG 74 (291)
T ss_pred CcCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCc-cccc------ccChhHhccCCCEEEEECCcH
Confidence 34688999999875 677889999999964 68999998765432211 0000 011234445789999999999
Q ss_pred hHHHHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceee
Q 001898 767 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 846 (998)
Q Consensus 767 TlL~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALN 846 (998)
|||+|+|.+...++|+||||+|+||||++++++++++.|+++++|+ |.+++|++|++++.++|+.+ ..++|||
T Consensus 75 t~l~~~~~~~~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~-----~~i~~r~~L~~~v~~~~~~~--~~~~AlN 147 (291)
T PRK02155 75 TMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGN-----YEEEERMLLEARVVRDGEPI--FHALAFN 147 (291)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCC-----ceEEEeEEEEEEEEECCeEE--Eeeeeee
Confidence 9999999998889999999999999999999999999999999998 45799999999988777654 2357999
Q ss_pred eEEEecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCC
Q 001898 847 EVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSA 926 (998)
Q Consensus 847 DVvI~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s 926 (998)
|++|.|+..++|++++|+|||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||+|+|+++
T Consensus 148 ev~v~~~~~~~~~~~~v~i~~~~~~~~~gDGlIVsTPtGSTAYslSaGGPIv~p~~~~~~ltPI~p~~l~~rpiVl~~~~ 227 (291)
T PRK02155 148 DVVVNRSGFSGMVELRVSVDGRFMYNQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIAPHTLSNRPIVLPDDS 227 (291)
T ss_pred heeeccCCCCceEEEEEEECCEEEEEEecCeEEEECCCchhhhhhhcCCcccCCCCCeEEEEecCcCccCCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCCC
Q 001898 927 RLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNE 991 (998)
Q Consensus 927 ~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~ 991 (998)
+|+|++.. . ..+.+++||+....+++||+|.|+.|+.+++++...+ .+||++|++||+|+.
T Consensus 228 ~i~i~~~~-~-~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~~~~~~~--~~f~~~l~~Kl~w~~ 288 (291)
T PRK02155 228 EVAIQIVG-G-RDVSVNFDMQSLTSLELGDRIEVRRSPHTVRFLHPVG--YSYYATLRKKLHWNE 288 (291)
T ss_pred EEEEEEcC-C-CcEEEEEcCCcceeCCCCCEEEEEECCCeEEEEecCC--CCHHHHHHHhcCCCC
Confidence 99999875 3 3689999999999999999999999999999998765 489999999999995
No 13
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.1e-60 Score=511.97 Aligned_cols=264 Identities=28% Similarity=0.497 Sum_probs=231.9
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 001898 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (998)
Q Consensus 692 ~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~ 770 (998)
+|+|+.++.. ++.+.++++++|| + .+++++++.+.++.+. ... .+..+. ++|+||++|||||||+
T Consensus 2 ~i~iv~~~~~~~~~~~~~~i~~~l-~-~g~~~~~~~~~~~~~~-~~~---------~~~~~~--~~D~vi~lGGDGT~L~ 67 (271)
T PRK01185 2 KVAFVIRKDCKRCIKIAKSIIELL-P-PDWEIIYEMEAAKALG-MDG---------LDIEEI--NADVIITIGGDGTILR 67 (271)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH-h-cCCEEEEechhhhhcC-ccc---------Cccccc--CCCEEEEEcCcHHHHH
Confidence 4899988775 6778899999999 4 4899998876544321 100 011222 6899999999999999
Q ss_pred HHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceeeeEEE
Q 001898 771 ASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850 (998)
Q Consensus 771 Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALNDVvI 850 (998)
|+|.+. +||+|||+|+||||+++++++++++|+++++|+ |.+++|++|++.+ +|+. .++||||++|
T Consensus 68 a~~~~~---~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~-----~~i~~r~~L~~~v--~g~~----~~~aLNdvvv 133 (271)
T PRK01185 68 TLQRAK---GPILGINMGGLGFLTEIEIDEVGSAIKKLIRGE-----YFIDERMKLKVYI--NGER----LEDCTNEAVI 133 (271)
T ss_pred HHHHcC---CCEEEEECCCCccCcccCHHHHHHHHHHHHcCC-----cEEEEeeEEEEEE--CCcE----eEEEEEEEEE
Confidence 999874 599999999999999999999999999999998 4579999999987 5543 2469999999
Q ss_pred ecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCCEEEE
Q 001898 851 DRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLEL 930 (998)
Q Consensus 851 ~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s~I~I 930 (998)
.++..++|++++++|||+++.+|+||||||||||||||||||||||||+|++++|++||||||+++.||+|+|++++|+|
T Consensus 134 ~~~~~~~~i~~~v~i~~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Ph~l~~rplVl~~~~~I~i 213 (271)
T PRK01185 134 HTDRIAKIRQFKIYYDGHFLDTFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVISYIAPYSSRPKSVVVPSESTVEI 213 (271)
T ss_pred ecCCCCcEEEEEEEECCEEEEEEEeeEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEecccCCCCCCCEEECCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcC
Q 001898 931 KIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLN 988 (998)
Q Consensus 931 ~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~ 988 (998)
++.. ...+.+++||+....+.+||+|+|++|++++++++..+ +||++||+||.
T Consensus 214 ~~~~--~~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~~v~~~~---~f~~~Lr~KL~ 266 (271)
T PRK01185 214 KIAG--DQSSLLILDGQYEYKISKGDTVEISKSENYARFISFRE---SPYDRIREKLI 266 (271)
T ss_pred EEcC--CCCEEEEECCCceEecCCCCEEEEEECCCeeEEEEcCC---CHHHHHHHHHh
Confidence 9864 34689999999999999999999999999999998752 89999999984
No 14
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=6.2e-60 Score=517.42 Aligned_cols=288 Identities=29% Similarity=0.451 Sum_probs=243.5
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTl 768 (998)
.++|+||.+++. ...+.+.++++||. +.|++|.++....+... ... + .......+|+||++||||||
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~-~~g~~v~v~~~~~~~~~-~~~------~----~~~~~~~~d~vi~~GGDGT~ 70 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLE-ARGCKVLMGPSGPKDNP-YPV------F----LASASELIDLAIVLGGDGTV 70 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHH-HCCCEEEEecCchhhcc-ccc------h----hhccccCcCEEEEECCcHHH
Confidence 478999999875 56678899999996 46899888765433111 000 0 12234568999999999999
Q ss_pred HHHHHhccCCCCcEEEEeC-CCCcccCCCC--cccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCee---cCCccc
Q 001898 769 LHASNLFRGAVPPVISFNL-GSLGFLTSHP--FEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKA---MPGKVF 842 (998)
Q Consensus 769 L~Aar~~~~~~~PVLGINl-G~LGFLt~~~--~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~---v~~~~~ 842 (998)
|++++.+...++||+|||+ |+||||+++. .++ ++.|+++++|+ |.+++|+||+|+++++|+. .....+
T Consensus 71 l~~~~~~~~~~~pv~gin~~G~lGFL~~~~~~~~~-~~~l~~i~~g~-----~~i~~r~~L~~~~~~~~~~~~~~~~~~~ 144 (305)
T PRK02645 71 LAAARHLAPHDIPILSVNVGGHLGFLTHPRDLLQD-ESVWDRLQEDR-----YAIERRMMLQARVFEGDRSNEEPVSESY 144 (305)
T ss_pred HHHHHHhccCCCCEEEEecCCcceEecCchhhcch-HHHHHHHHcCC-----ceEEEeeEEEEEEEeCCcccccccccce
Confidence 9999999888999999999 8999999875 344 78999999998 4579999999998776531 001246
Q ss_pred ceeeeEEEecCCCCeeE--EEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCe
Q 001898 843 DVLNEVVVDRGSNPYLS--KIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPV 920 (998)
Q Consensus 843 ~ALNDVvI~Rg~~~~~~--~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPI 920 (998)
+||||++|.++..++++ .++|+|||+++++|+||||||||||||||||||||||||+|++++|++||||||++++|||
T Consensus 145 ~AlNev~i~~~~~~~~~~~~~~v~id~~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~vtPi~ph~l~~rpl 224 (305)
T PRK02645 145 YALNDFYLKPASEDRSPTCILELEIDGEVVDQYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPICPMSLSSRPI 224 (305)
T ss_pred EEEeeEEEeccCcccccceEEEEEECCEEEEEEecCEEEEecCCChhhhhhhcCCcccCCCCCeEEEEecCcccccCCCE
Confidence 79999999998877775 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCCCccCCC
Q 001898 921 ILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERLDQK 996 (998)
Q Consensus 921 Vlp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~R~~Qk 996 (998)
|+|++++|+|++.......+.+++||+....+++||+|.|++|+.+++++...+ ..+||+.|++||+|+++..||
T Consensus 225 Vlp~~~~i~i~~~~~~~~~~~l~~DG~~~~~l~~~~~i~i~~s~~~~~~v~~~~-~~~f~~~L~~Kl~w~~~~~~~ 299 (305)
T PRK02645 225 VIPPGSRVVIWPLGDYDLNIKLWKDGVLATSIWPGQRCVIQKARHPAKFIILEE-SYSYYRTLREKLHWAGSLIHY 299 (305)
T ss_pred EECCCCEEEEEEcCCCCCcEEEEECCCcceecCCCCEEEEEECCCceEEEEeCC-CCCHHHHHHHHcCCCCccccc
Confidence 999999999997643334588999999999999999999999999999997643 248999999999999998886
No 15
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.3e-59 Score=549.87 Aligned_cols=285 Identities=27% Similarity=0.479 Sum_probs=249.2
Q ss_pred cccccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEE
Q 001898 684 LMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 762 (998)
Q Consensus 684 l~w~~~pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvL 762 (998)
-.|..+|++|+|+.|+.. ++.+.++++++||.+ .+++|++++.....+... . .... ....+ ..++|+||+|
T Consensus 284 ~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~~~~v~~~~~~~~~~~~~--~--~~~~--~~~~~-~~~~dlvi~l 355 (569)
T PRK14076 284 NKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDS-KGIPYELESFLYNKLKNR--L--NEEC--NLIDD-IEEISHIISI 355 (569)
T ss_pred hhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHH-CCCEEEEechhhhhhccc--c--cccc--ccccc-ccCCCEEEEE
Confidence 469999999999999875 677889999999964 689999987654432210 0 0000 00112 2368999999
Q ss_pred cCCchHHHHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCccc
Q 001898 763 GGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVF 842 (998)
Q Consensus 763 GGDGTlL~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~ 842 (998)
|||||||+|+|.+...++||||||+|+||||++++++++++.|+++++|+ |.+++|+||+++++++++.. ..+
T Consensus 356 GGDGT~L~aa~~~~~~~~PilGin~G~lGFL~~~~~~~~~~~l~~~~~g~-----~~i~~r~~L~~~v~~~~~~~--~~~ 428 (569)
T PRK14076 356 GGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIISGE-----YEIEKRTKLSGFILKDGHQN--ILP 428 (569)
T ss_pred CCcHHHHHHHHHhcCCCCCEEEEcCCCCCcCcccCHHHHHHHHHHHHcCC-----ceEEEeEEEEEEEEECCcce--eee
Confidence 99999999999999899999999999999999999999999999999998 55899999999998776543 246
Q ss_pred ceeeeEEEecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEe
Q 001898 843 DVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVIL 922 (998)
Q Consensus 843 ~ALNDVvI~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVl 922 (998)
+||||++|.|+..++|++++|+|||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||||+
T Consensus 429 ~alNdv~i~~~~~~~~~~~~v~i~~~~~~~~~~DGlivsTptGSTaYslSAGGPiv~p~~~~~~~tPI~ph~l~~rplV~ 508 (569)
T PRK14076 429 SALNEVVITTKNPAKMLHFEVYVNGELVEEVRADGIIISTPTGSTAYSLSAGGPIVEPTVDGFIIVPICPFKLSSRPLVV 508 (569)
T ss_pred EEEEEEEEccCCCCceEEEEEEECCEEEEEEECCEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEeeccCCCCCCCEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCC
Q 001898 923 PDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWN 990 (998)
Q Consensus 923 p~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg 990 (998)
|++++|+|++.. ..+.+++||+...+|.+||+|.|++|++++++|+. .+||++||+||+-|
T Consensus 509 ~~~~~i~i~~~~---~~~~l~~DG~~~~~l~~gd~I~I~~s~~~~~~v~~----~~f~~~Lr~Kl~~~ 569 (569)
T PRK14076 509 SANSEIKIKLLK---KSALVVIDGSIEFEAKKGDEIIFRKSDSYAYFVKG----DNFYNKLKKLSLMG 569 (569)
T ss_pred CCCCEEEEEEeC---CcEEEEECCceeeecCCCCEEEEEECCceEEEEec----chHHHHHHHHhCCC
Confidence 999999999863 46899999999999999999999999999999974 27999999999854
No 16
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=100.00 E-value=8e-59 Score=503.43 Aligned_cols=280 Identities=33% Similarity=0.569 Sum_probs=248.0
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH
Q 001898 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (998)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL 769 (998)
++|+|+.++.. ++...++++..|+. ..+..+.+++...+.+... . .+ .+.-.+.+|+|+++|||||+|
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~l~~~--~----~~----~~~~~~~~d~ivvlGGDGtlL 69 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLK-FKGVTVEVDQELAEELKDF--A----DY----VDDDEEKADLIVVLGGDGTLL 69 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHH-hcCceEEEechhhhhcccc--c----cc----ccccccCceEEEEeCCcHHHH
Confidence 47899999886 56788899999996 4688888888877655321 0 00 111236799999999999999
Q ss_pred HHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceeeeEE
Q 001898 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (998)
Q Consensus 770 ~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALNDVv 849 (998)
++++++...++||+|||+|+|||||+++++++++.++++++|+ |.+++|++|++.+.+.+ . ..++||||++
T Consensus 70 ~~~~~~~~~~~pilgin~G~lGFLt~~~~~~~~~~~~~~~~~~-----~~~~~r~~l~~~v~~~~--~--~~~~aLNEv~ 140 (281)
T COG0061 70 RAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDALLEGE-----YRIEERLLLEVSVNRGD--I--RRALALNEVV 140 (281)
T ss_pred HHHHHhccCCCCEEEEeCCCcccccccCHHHHHHHHHHHhcCc-----eEEEEeEEEEEEEEeCC--c--cccceeeEEE
Confidence 9999999999999999999999999999999999999999976 56799999999997665 2 3578999999
Q ss_pred EecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCCEEE
Q 001898 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 929 (998)
Q Consensus 850 I~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s~I~ 929 (998)
|.++..++|+.+++|+||+++++++||||||||||||||||+|||||||||++++|+|||||||++++||+|+|..++|+
T Consensus 141 I~~~~~~~~~~~~v~id~~~~~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi~p~~l~~Rpiv~p~~~~v~ 220 (281)
T COG0061 141 IHRGSPAKMIEFEVYIDDEFFESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPICPHSLSFRPLVLPSSSTVR 220 (281)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEEeecCCCcccCCCEEECCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCCC
Q 001898 930 LKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNE 991 (998)
Q Consensus 930 I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~ 991 (998)
+++....+..+++++||+....+.+|++|+|+++++++++++.... .+||++|++||+|+.
T Consensus 221 i~~~~~~~~~~~~~~Dg~~~~~~~~~~~i~i~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 281 (281)
T COG0061 221 IEVLLTPKRDAVVVVDGQELLLINPGDRIEIRRSPYKARFIRLRSY-DDFFERLRSKLIWGV 281 (281)
T ss_pred EEEccCCCcceEEEEcCCceEecCCCCEEEEEECCCceeEEecCCc-ccHHHHHHHHhcCCC
Confidence 9988655556799999999999999999999999999999986543 389999999999984
No 17
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=5.7e-59 Score=500.38 Aligned_cols=254 Identities=23% Similarity=0.401 Sum_probs=226.3
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~ 770 (998)
++|+|+.+..+++.+.++++.+||.+ .|+++.++ . +++|+||++|||||||+
T Consensus 3 ~~i~iv~~~~~~a~~~~~~l~~~l~~-~g~~~~~~--------------------------~-~~~D~vi~lGGDGT~L~ 54 (264)
T PRK03501 3 RNLFFFYKRDKELVEKVKPLKKIAEE-YGFTVVDH--------------------------P-KNANIIVSIGGDGTFLQ 54 (264)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHHH-CCCEEEcC--------------------------C-CCccEEEEECCcHHHHH
Confidence 37899988888778889999999964 46665531 0 34799999999999999
Q ss_pred HHHhccCC-CCcEEEEeC-CCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceeeeE
Q 001898 771 ASNLFRGA-VPPVISFNL-GSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (998)
Q Consensus 771 Aar~~~~~-~~PVLGINl-G~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALNDV 848 (998)
|+|.+... .+||+|||+ |+||||++++++++++.|+++++|+ |.+++|++|++.+ +|+. .++||||+
T Consensus 55 a~~~~~~~~~~pilgIn~~G~lGFL~~~~~~~~~~~l~~i~~g~-----~~~~~r~~l~~~v--~~~~----~~~alNev 123 (264)
T PRK03501 55 AVRKTGFREDCLYAGISTKDQLGFYCDFHIDDLDKMIQAITKEE-----IEVRKYPTIEVTV--DGST----SFYCLNEF 123 (264)
T ss_pred HHHHhcccCCCeEEeEecCCCCeEcccCCHHHHHHHHHHHHcCC-----cEEEEeeeEEEEE--CCcc----ceEEEEEE
Confidence 99998765 789999999 9999999999999999999999998 4579999999987 4432 25799999
Q ss_pred EEecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCC-C----CCeEeC
Q 001898 849 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLS-F----RPVILP 923 (998)
Q Consensus 849 vI~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs-~----RPIVlp 923 (998)
+| ++..++|+.++|+|||+++++|+||||||||||||||||||||||||+|++++|++||||||+++ + ||+|+|
T Consensus 124 vi-~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~P~~~~~~~~l~rpiVl~ 202 (264)
T PRK03501 124 SI-RSSIIKTFVIDVYIDDLHFETFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQVSELASLNNNTYRTLGSPFILS 202 (264)
T ss_pred EE-cCCCCceEEEEEEECCEEeEEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEeccccCccccccCCCCEEEC
Confidence 99 77778899999999999999999999999999999999999999999999999999999999987 5 999999
Q ss_pred CCCEEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhc
Q 001898 924 DSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCL 987 (998)
Q Consensus 924 ~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL 987 (998)
++++|+|++.......+.+++||+. .++++||+|.|++|++++++++..+ .+||++||+|+
T Consensus 203 ~~~~I~i~~~~~~~~~~~l~~DG~~-~~l~~~d~i~I~~s~~~~~lv~~~~--~~f~~~Lr~Kf 263 (264)
T PRK03501 203 HERKLTLKIVQDGNDYPIIGMDNEA-LSIKHVEKIDIRLSDKQIKTVKLKD--NSFWEKVKRTF 263 (264)
T ss_pred CCCEEEEEEecCCCCcEEEEEeCCE-EEcCCCCEEEEEECCCEEEEEEeCC--CCHHHHHHHhh
Confidence 9999999987533346789999998 9999999999999999999998765 48999999997
No 18
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=8.9e-59 Score=502.27 Aligned_cols=273 Identities=29% Similarity=0.494 Sum_probs=237.0
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchHH
Q 001898 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (998)
Q Consensus 692 ~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl-~~~~DlVIvLGGDGTlL 769 (998)
+|+|+.+++. +..+.+.++++||.+ .+++|.++++.......... ....++ ..++|+||++|||||||
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~~~~~~~~~~~~---------~~~~~~~~~~~d~vi~iGGDGTlL 71 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDSETYEHLPEFSE---------EDVLPLEEMDVDFIIAIGGDGTIL 71 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcccc---------cccccccccCCCEEEEEeCcHHHH
Confidence 5899988875 678889999999964 68999987643322110000 000112 23789999999999999
Q ss_pred HHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceeeeEE
Q 001898 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (998)
Q Consensus 770 ~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALNDVv 849 (998)
+|+| +...++||+|||+|++|||++++++++.++|+++++|+ |.++.|++|++.+ +|+. .++||||++
T Consensus 72 ~a~~-~~~~~~pi~gIn~G~lGFl~~~~~~~~~~~l~~i~~g~-----~~~~~r~~l~~~~--~~~~----~~~alNdv~ 139 (277)
T PRK03708 72 RIEH-KTKKDIPILGINMGTLGFLTEVEPEETFFALSRLLEGD-----YFIDERIKLRVYI--NGEN----VPDALNEVV 139 (277)
T ss_pred HHHH-hcCCCCeEEEEeCCCCCccccCCHHHHHHHHHHHHcCC-----ceEEEeEEEEEEE--CCeE----eEEEeeeEE
Confidence 9999 66778999999999999999999999999999999998 4579999999987 5543 257999999
Q ss_pred EecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCCEEE
Q 001898 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 929 (998)
Q Consensus 850 I~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s~I~ 929 (998)
|.++..++|++++|+|||+++++|+||||||||||||||||+|||||||||++++|++||||||+++.||+|+|++++|+
T Consensus 140 v~~~~~~~~~~~~v~idg~~~~~~~gDGvIvsTptGSTAY~lSaGGpIv~p~~~~~~vtPi~p~~l~~rplV~~~~~~i~ 219 (277)
T PRK03708 140 ILTGIPGKIIHLKYYVDGELADEVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILIAPLCPFKLSSRPMVVPSSSRID 219 (277)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCcccCCCCCeEEEEecccccCCCCCEEECCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCC
Q 001898 930 LKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWN 990 (998)
Q Consensus 930 I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg 990 (998)
|++.... ..+.+++||+....+++|+.|.|++|++.++++... .+||+.||+||.|.
T Consensus 220 l~~~~~~-~~~~l~~DG~~~~~l~~~~~v~i~~s~~~~~~~~~~---~~f~~~lr~KL~~~ 276 (277)
T PRK03708 220 VKLLRTG-REIILVIDGQYYEELPPDTEITIKKSPRKTKFVRFS---KEIYPKYTMKIKER 276 (277)
T ss_pred EEEecCC-CcEEEEECCCeeEecCCCCEEEEEECCCeEEEEecC---CcHHHHHHHHhhhc
Confidence 9986433 368899999999999999999999999999999875 38999999999994
No 19
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3e-57 Score=487.46 Aligned_cols=251 Identities=21% Similarity=0.309 Sum_probs=221.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHHH
Q 001898 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (998)
Q Consensus 692 ~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~A 771 (998)
+|+|+.+..++..+.++++.+||.+ .|+++ + .+++|+||++|||||||+|
T Consensus 2 ~i~Ii~~~~~~~~~~~~~l~~~l~~-~g~~~--~---------------------------~~~~Dlvi~iGGDGT~L~a 51 (265)
T PRK04885 2 KVAIISNGDPKSKRVASKLKKYLKD-FGFIL--D---------------------------EKNPDIVISVGGDGTLLSA 51 (265)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-cCCcc--C---------------------------CcCCCEEEEECCcHHHHHH
Confidence 4889988666788899999999964 35441 0 1357999999999999999
Q ss_pred HHhccC--CCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceeeeEE
Q 001898 772 SNLFRG--AVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (998)
Q Consensus 772 ar~~~~--~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALNDVv 849 (998)
+|.+.. .++||+|||+|+||||++++++++++.|+++++|+ |.+++|++|++++.++++.. ..++||||++
T Consensus 52 ~~~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~-----y~i~~r~~L~~~v~~~~~~~--~~~~alNev~ 124 (265)
T PRK04885 52 FHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAKDP-----GQVVSYPLLEVKITYEDGEK--EKYLALNEAT 124 (265)
T ss_pred HHHhcccCCCCeEEEEeCCCceecccCCHHHHHHHHHHHHcCC-----ceEEEEeeEEEEEEeCCCcE--eeeeeeeeee
Confidence 999987 68999999999999999999999999999999998 45789999999987655432 1357999999
Q ss_pred EecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCC-------CeEe
Q 001898 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFR-------PVIL 922 (998)
Q Consensus 850 I~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~R-------PIVl 922 (998)
|.++. ++++++++|||+++++|+||||||||||||||||||||||||+|++++|++|||||+ +.| |+|+
T Consensus 125 i~~~~--~~~~~~v~id~~~~~~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltPI~~l--~~r~~~~~~~plVl 200 (265)
T PRK04885 125 IKRIE--GTLVADVYINGVLFERFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIASI--NNRVFRTLGSPLIL 200 (265)
T ss_pred eccCC--ceEEEEEEECCEEEEEEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEeeccc--cccccccCCCCEEE
Confidence 99865 699999999999999999999999999999999999999999999999999999974 444 9999
Q ss_pred CCCCEEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcC
Q 001898 923 PDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLN 988 (998)
Q Consensus 923 p~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~ 988 (998)
|++++|+|++.. ...+.+++||+. ..+++||+|+|++|++++++++..+ .+||++||+||-
T Consensus 201 ~~~~~I~i~~~~--~~~~~l~~DG~~-~~l~~~d~i~i~~s~~~~~li~~~~--~~f~~~Lr~Kf~ 261 (265)
T PRK04885 201 PKHHTITLKPVN--DDDYQITVDHLT-IKHKNVKSIEYRVANEKIRFARFRH--FPFWKRVKDSFI 261 (265)
T ss_pred CCCCEEEEEEcC--CCcEEEEECCCE-eecCCCCEEEEEECCceEEEEEcCC--CCHHHHHHHHhc
Confidence 999999999864 246899999999 9999999999999999999998765 489999999974
No 20
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=7.2e-56 Score=474.85 Aligned_cols=254 Identities=25% Similarity=0.369 Sum_probs=223.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHHH
Q 001898 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (998)
Q Consensus 692 ~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~A 771 (998)
+++|++|+. ..+.++++.+||.+ .|+.+.++.+.. ....++|+||++|||||||+|
T Consensus 2 ~~~~~~~~~--~~~~~~~~~~~l~~-~~~~~~~~~~~~---------------------~~~~~~d~vi~iGGDGT~L~a 57 (256)
T PRK14075 2 KLGIFYREE--KEKEAKFLKEKISK-EHEVVEFCEASA---------------------SGKVTADLIIVVGGDGTVLKA 57 (256)
T ss_pred EEEEEeCcc--HHHHHHHHHHHHHH-cCCeeEeecccc---------------------cccCCCCEEEEECCcHHHHHH
Confidence 467776665 55778899999965 577777654321 112468999999999999999
Q ss_pred HHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceeeeEEEe
Q 001898 772 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVD 851 (998)
Q Consensus 772 ar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALNDVvI~ 851 (998)
+|.+ ++||+|||+|+||||++++++++++.|+++++|+ |.+++|++|++++. ++ .++||||++|.
T Consensus 58 ~~~~---~~Pilgin~G~lGfl~~~~~~~~~~~l~~~~~g~-----~~~~~r~~l~~~~~-~~------~~~alNev~i~ 122 (256)
T PRK14075 58 AKKV---GTPLVGFKAGRLGFLSSYTLEEIDRFLEDLKNWN-----FREEKRWFLKIESE-LG------NHLALNDVTLE 122 (256)
T ss_pred HHHc---CCCEEEEeCCCCccccccCHHHHHHHHHHHHcCC-----cEEEEeeEEEEEEc-CC------cEEEEEEEEEe
Confidence 9998 7999999999999999999999999999999998 55789999999873 22 25799999999
Q ss_pred cCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCCCCeEeCCCCEEEEE
Q 001898 852 RGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELK 931 (998)
Q Consensus 852 Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~RPIVlp~~s~I~I~ 931 (998)
++..++++++++++||+.+.+|+||||||||||||||||+|||||||+|+++++++||||||+++.||+|+|++++|+|+
T Consensus 123 ~~~~~~~~~~~v~i~~~~~~~~~~DG~ivsTptGSTaY~lSaGGpiv~p~~~~l~ItPI~Ph~L~~rpiVlp~~~~I~I~ 202 (256)
T PRK14075 123 RDPSQKMVEIEVSFEDHSSMWFFADGVVISTPTGSTAYSLSLGGPIILPNCEVFEITPIAPQFLATRSIVIPSNEKVTVE 202 (256)
T ss_pred cCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCceeCCCCCeEEeeeeehhhcCCCceEcCCCCEEEEE
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEecCCCCCchHHHHhhhcCCCCcc
Q 001898 932 IPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERL 993 (998)
Q Consensus 932 v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~R~ 993 (998)
+. ..+.+.+||+. +..++.|+|+.+++.++++...+ .+||+.|++||+|+.|+
T Consensus 203 ~~----~~~~l~iDGe~---~~~~~~I~I~~s~~~l~li~~~~--~~f~~~l~~kl~w~~~~ 255 (256)
T PRK14075 203 SQ----RDINLIVDGVL---VGKTNRITVKKSRRYVRILRPKD--YDFVTVIKEKLGYGRRI 255 (256)
T ss_pred EC----CceEEEECCCC---cCCCcEEEEEECCCEEEEEEcCC--CCHHHHHHHHhcCCcCC
Confidence 74 25789999986 56888999999999999998764 59999999999999875
No 21
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2e-55 Score=471.25 Aligned_cols=245 Identities=21% Similarity=0.304 Sum_probs=212.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHHH
Q 001898 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (998)
Q Consensus 692 ~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~A 771 (998)
+..|+.++.++..+.++++.+++... ++ ..+++|+||+||||||||+|
T Consensus 2 ~~~i~~~~~~~s~~~~~~l~~~~~~~-~~-------------------------------~~~~~D~vi~iGGDGT~L~a 49 (259)
T PRK00561 2 KYKIFASTTPQTEPVLPKLKKVLKKK-LA-------------------------------VEDGADYLFVLGGDGFFVST 49 (259)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhC-CC-------------------------------ccCCCCEEEEECCcHHHHHH
Confidence 57899999998888888888877421 10 01357999999999999999
Q ss_pred HHhccCCCCcEEEEeCCCCcccCCCCcccHHH-HHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCcccceeeeEEE
Q 001898 772 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQ-DLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850 (998)
Q Consensus 772 ar~~~~~~~PVLGINlG~LGFLt~~~~eel~~-~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~ALNDVvI 850 (998)
+|.+...++||+|||+|+||||++++++++++ .++++.+ + .+++|++|++.+ +++ ..+||||++|
T Consensus 50 ~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~~~~~l~~--~-----~~~~r~~L~~~~--~~~-----~~~AlNE~vi 115 (259)
T PRK00561 50 AANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFANKLDQ--L-----KFTQIDLLEVQI--DDQ-----IHLVLNELAV 115 (259)
T ss_pred HHHhcCCCCcEEEEecCCCccccccCHHHHHHHHHHHHhh--C-----CeEEEEEEEEEE--CCC-----eeEEEEEEEE
Confidence 99999899999999999999999999999998 6666654 2 257899999987 333 2479999999
Q ss_pred ecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCC-----CCCCCeEeCCC
Q 001898 851 DRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHS-----LSFRPVILPDS 925 (998)
Q Consensus 851 ~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHs-----Ls~RPIVlp~~ 925 (998)
.++. ++.++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||+ +..||+|+|++
T Consensus 116 ~~~~---~~~~~v~idg~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~itPI~Ph~~~~~~~~~rplVl~~~ 192 (259)
T PRK00561 116 YTNT---AYPINIFIDNEFWEKYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIELNPLLHPNQTTIQSPIILPID 192 (259)
T ss_pred ccCC---ceEEEEEECCEEEEEEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEEEeeCCCCcccccccCCCeEECCC
Confidence 8765 689999999999999999999999999999999999999999999999999999998 45799999999
Q ss_pred CEEEEEEcCCC--CccEEEEEcCccccccCCCCEEEEEeeCceee-EEecCCCCCchHHHHhhhc
Q 001898 926 ARLELKIPDDA--RSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIP-TVNKSDQTGDWFHSLVRCL 987 (998)
Q Consensus 926 s~I~I~v~~~~--r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~-lV~~~~~~~d~f~~Lr~KL 987 (998)
++|+|++.... +..+.+++||+....+.+||+|.|++++.+++ +++..+ .+||+.|++|+
T Consensus 193 ~~I~i~~~~~~~~~~~~~l~~DG~~~~~l~~~d~v~i~~s~~~~~~~v~~~~--~~f~~~Lr~Kf 255 (259)
T PRK00561 193 TKVEFEIKKAFDHDQFPRFYADGAKLRLGNSDTTIEISLVRSQAMFVASLKT--RDFIQKLKSTF 255 (259)
T ss_pred CEEEEEEccCCCCCCcEEEEEcCCeeecCCCCCEEEEEEcCccceEEEECCC--CCHHHHHHHHh
Confidence 99999986421 13578999999999999999999999999999 687654 59999999998
No 22
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=100.00 E-value=6.1e-54 Score=465.32 Aligned_cols=270 Identities=36% Similarity=0.615 Sum_probs=227.4
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCC--Cccce---------eeeccCcccccCCccEE
Q 001898 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPG--FGFVQ---------TFYLQDTSDLHERVDFV 759 (998)
Q Consensus 692 ~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~--~~~~~---------~~~~~~~~dl~~~~DlV 759 (998)
+|+|+.|+.. ++.+.++++++||.++.++.++++..+++.+..... ..... ...........+++|+|
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 6899999995 678999999999986558999998877653321000 00000 01111122346789999
Q ss_pred EEEcCCchHHHHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCe--ec
Q 001898 760 ACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGK--AM 837 (998)
Q Consensus 760 IvLGGDGTlL~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~--~v 837 (998)
|++|||||+|+++|.+...++||+|||+|++|||++++++++.+.|+++++|+ |.+++|++|++.+.+.+. ..
T Consensus 81 i~lGGDGT~L~~~~~~~~~~~Pilgin~G~lgfl~~~~~~~~~~~l~~~~~g~-----~~~~~r~~l~~~~~~~~~~~~~ 155 (285)
T PF01513_consen 81 IVLGGDGTFLRAARLFGDYDIPILGINTGTLGFLTEFEPEDIEEALEKILAGE-----YSIEERMRLEVSVDRKKGAEIA 155 (285)
T ss_dssp EEEESHHHHHHHHHHCTTST-EEEEEESSSSTSSSSEEGCGHHHHHHHHHHTH-----CEEEEEEEEEEEEEETTE-CEE
T ss_pred EEECCCHHHHHHHHHhccCCCcEEeecCCCccccccCCHHHHHHHHHHHhcCC-----eEEEEeeeEEEEEecCCcccee
Confidence 99999999999999999889999999999999999999999999999999988 568999999999987765 22
Q ss_pred CCcccceeeeEEEecCCCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCCC
Q 001898 838 PGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSF 917 (998)
Q Consensus 838 ~~~~~~ALNDVvI~Rg~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs~ 917 (998)
..++||||++|.++..+.++++++++|++++++++|||+|||||||||||++||||||++|++++|++||||||+++.
T Consensus 156 --~~~~alNei~i~~~~~~~~~~~~v~i~~~~~~~~~~dGlivsTptGSTay~lSaGGpiv~p~~~~~~~tpi~p~~~~~ 233 (285)
T PF01513_consen 156 --LIDYALNEIVISRGRASRMIELEVFIDGEFLETYRGDGLIVSTPTGSTAYSLSAGGPIVHPGLDVIILTPICPHSLSN 233 (285)
T ss_dssp --EEEEESSEEEEEESSTSSEEEEEEEETTEEEEEEEESEEEEEETGGGGTHHHHTT--EE-TTSSEEEEEEESESSTT-
T ss_pred --eeeeeecCeeEEcCCCccceEEEEEECCEEEEEEEEeeeEEEecCCceEEEEecCccEeccCcceeEEEeccccccCC
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeCCCCEEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCceeeEEe
Q 001898 918 RPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVN 971 (998)
Q Consensus 918 RPIVlp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~ 971 (998)
||+|+|++++|+|++. +..+.+++||+....+++||+|+|++|++++++|+
T Consensus 234 rpiVl~~~~~i~i~~~---~~~~~~~~DG~~~~~~~~~d~i~i~~s~~~~~~ir 284 (285)
T PF01513_consen 234 RPIVLPDDSEIEIKVE---RREAVLAIDGQREIELKPGDEIRIRKSPKPVKLIR 284 (285)
T ss_dssp S-EEEETTSEEEEEEE---SCEEEEEETTTEEEEECTTEEEEEEEECCEEEEEE
T ss_pred ceEEECCCCEEEEEEe---CCCEEEEEECCceEEeCCCcEEEEEEcCCccEEEe
Confidence 9999999999999987 35789999999999999999999999999999985
No 23
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=100.00 E-value=8.5e-51 Score=432.85 Aligned_cols=214 Identities=23% Similarity=0.324 Sum_probs=183.0
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCCCcccCC-CCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEe
Q 001898 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTS-HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFR 832 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINlG~LGFLt~-~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r 832 (998)
+++|+||+||||||||+|+|.+...++||+|||+|+||||++ ++++++.+.|+++..+. ++.|++ ++. ..
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G~lGFL~~~~~~~e~~~~l~~~~~~~-------~~~l~~-~~~-~~ 94 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSEDDLLERIAAAEPTV-------LHPLRM-TAT-DV 94 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCCCCcccCCCCHHHHHHHHHHhhcCc-------EEEEEE-EEE-EC
Confidence 357999999999999999999988899999999999999996 89999999999887653 233433 333 22
Q ss_pred CCeecCCcccceeeeEEEecCCCCeeEEEEEEECCEE-eeeEeecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeC
Q 001898 833 NGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL-ITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPIC 911 (998)
Q Consensus 833 ~G~~v~~~~~~ALNDVvI~Rg~~~~~~~i~V~IDge~-v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIc 911 (998)
+|+. ..++||||++|.|+. ++++.++++|||++ +++|+||||||||||||||||||||||||+|++++|++||||
T Consensus 95 ~~~~---~~~~ALNev~i~~~~-~~~~~~~v~idg~~~~~~~~gDGlIVSTPtGSTAY~lSAGGPIv~P~~~~~~itPI~ 170 (246)
T PRK04761 95 SGEV---HEALAINEVSLFRQT-RQAAKLRISIDGKVRMEELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPIS 170 (246)
T ss_pred CCcE---eeeeeeeheeeecCC-CceEEEEEEECCEEEEEEEecCeEEEeCCcCHHHHHhhCCCcccCCCCCeEEEEeec
Confidence 3432 235799999999887 67999999999996 999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCeEeCCCCEEEEEEcCCCCccEEEEEcCccccccCCCCEEEEEeeCce-eeEEecCCCCCchHHHHhh
Q 001898 912 PHSLS-FRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHP-IPTVNKSDQTGDWFHSLVR 985 (998)
Q Consensus 912 PHsLs-~RPIVlp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~-l~lV~~~~~~~d~f~~Lr~ 985 (998)
||++. +||+|+|++++|+|++....+..+.+++||+.. ..+|+|.|++|+.. ++++...+ .+||++|-.
T Consensus 171 P~~~~~~RplVlp~~~~I~i~~~~~~~~~~~l~~DG~~~---~~~~~v~I~~s~~~~~~l~~~~~--~~~~~~~~~ 241 (246)
T PRK04761 171 PFRPRRWRGALLPNSATVRFDVLEPDKRPVSAVADNTEV---RDVVEVTIREDKDITVTLLFDPG--HSLEERILA 241 (246)
T ss_pred ccCCcCCccEEECCCCEEEEEEecCCCCcEEEEEcCCCc---ccCcEEEEEEcCCccEEEEECCC--CCHHHHHHH
Confidence 99976 899999999999999864333468899999875 34899999999987 88888765 589988754
No 24
>PLN02929 NADH kinase
Probab=100.00 E-value=3.4e-49 Score=430.16 Aligned_cols=234 Identities=23% Similarity=0.364 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHHHHHhccCCCCcEE
Q 001898 704 MEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVI 783 (998)
Q Consensus 704 ~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVL 783 (998)
...+..+.+||.+ .|+++...... +..+...++|+||++|||||||+|+|.+ ...+||+
T Consensus 33 ~~~~~~~~~~L~~-~gi~~~~v~r~-------------------~~~~~~~~~Dlvi~lGGDGT~L~aa~~~-~~~iPvl 91 (301)
T PLN02929 33 KDTVNFCKDILQQ-KSVDWECVLRN-------------------ELSQPIRDVDLVVAVGGDGTLLQASHFL-DDSIPVL 91 (301)
T ss_pred HHHHHHHHHHHHH-cCCEEEEeecc-------------------ccccccCCCCEEEEECCcHHHHHHHHHc-CCCCcEE
Confidence 4456788889864 57776422110 0012235789999999999999999999 7889999
Q ss_pred EEeCC------------------CCcccCCCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCCccccee
Q 001898 784 SFNLG------------------SLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVL 845 (998)
Q Consensus 784 GINlG------------------~LGFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~~~~~AL 845 (998)
|||+| ++||||+++++++++.|+++++|+ |.+++|+||++++ +|+.. ..+||
T Consensus 92 GIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~-----~~~~~r~~L~~~v--~g~~~---~~~AL 161 (301)
T PLN02929 92 GVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGR-----LKPTELSRISTVV--NGTLL---ETPAL 161 (301)
T ss_pred EEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCC-----ceEEEeeeEEEEe--cCCcc---cceEe
Confidence 99999 799999999999999999999998 4579999999988 55443 23799
Q ss_pred eeEEEecCCCCeeEEEEEEEC-----CEEeeeEeecEeEEcCCCChhHHhhhcCC---CCcCCCCCceeeEEeCCCCCCC
Q 001898 846 NEVVVDRGSNPYLSKIECYEH-----DRLITKVQGDGVIVATPTGSTAYSTAAGG---SMVHPNVPCMLFTPICPHSLSF 917 (998)
Q Consensus 846 NDVvI~Rg~~~~~~~i~V~ID-----ge~v~~~rgDGLIVSTPTGSTAYsLSAGG---PIV~P~v~aillTPIcPHsLs~ 917 (998)
||++|.++..+++++++++|| |+++.+++|||||||||||||||+||||| ||++|++++|++||||||+ +.
T Consensus 162 NEv~I~~~~~~~~~~~~v~i~~~g~~~~~~~~~~~DGliVsTpTGSTAY~lSAGG~i~Piv~P~l~~~vltPI~Ph~-~~ 240 (301)
T PLN02929 162 NDVLIAHPSPAAVSRFSFRVGRQGGSSGPLINVRSSGLRVSTAAGSTAAMLSAGGFPMPLLSRDLQYMVREPISPGH-PP 240 (301)
T ss_pred eEEEEccCCCccEEEEEEEEcCccCCCceeEEeecCcEEEeCCccHHHHHHhcCCCCCCCCCcccceEEEEeeCCCC-CC
Confidence 999999999999999999999 88999999999999999999999999999 9999999999999999999 99
Q ss_pred CCe---EeCCCCEEEEEEcCCCCccEEEEEcC-ccccccCCCCEEEEEeeCceeeEEec
Q 001898 918 RPV---ILPDSARLELKIPDDARSNAWVSFDG-KRRQQLSRGDSVRIFMSEHPIPTVNK 972 (998)
Q Consensus 918 RPI---Vlp~~s~I~I~v~~~~r~~~~vsiDG-~~~~~L~~Gd~V~I~~S~~~l~lV~~ 972 (998)
||+ |++++++|+|++.. ..+.+++|| +....++.||+|+|++++.+++++..
T Consensus 241 r~l~~~vv~~~~~i~i~~~~---~~~~i~iDG~~~~~~l~~gd~i~I~~s~~~l~l~~~ 296 (301)
T PLN02929 241 KSLMHGFYKPGQHMQVRWNS---RKGTIYIDGSHVMHSIKLGDTIEISSDAPPLKVFLS 296 (301)
T ss_pred CCccccEECCCCeEEEEEeC---CCEEEEECCCcceEecCCCCEEEEEECCCeEEEEEe
Confidence 999 99999999998843 358999999 56678999999999999999999974
No 25
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.90 E-value=9.3e-24 Score=211.87 Aligned_cols=132 Identities=23% Similarity=0.285 Sum_probs=85.8
Q ss_pred CceeeeccCCcccccCCCCcceEEEcCCC---CHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEe
Q 001898 247 NWSPVYLSNSKDDIASKDSEVTFCRGGQV---TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (998)
Q Consensus 247 Nfr~V~~~~s~d~~~~~~~~~~LYRSgqp---T~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIP 323 (998)
|||++++.++.+ +...+.+.||||+++ |++|++.|.++||+||||||++.+ .. ........|++++|+|
T Consensus 1 N~RDlGg~~~~~--g~~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E-~~-----~~p~~~~~g~~~~~~p 72 (164)
T PF13350_consen 1 NFRDLGGYPTAD--GRRIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTE-RE-----RAPDPLIDGVQYVHIP 72 (164)
T ss_dssp S-EEGGGTST------TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHH-HH-----HHS----TT-EEEE--
T ss_pred CccccCCCCccc--eeeecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccc-cc-----cCCCCCcCCceeeeec
Confidence 899998887765 456778899999965 799999999999999999999851 11 0112234599999999
Q ss_pred cCCCCCCC-----------------------------HHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCC
Q 001898 324 VEVRTAPT-----------------------------MEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (998)
Q Consensus 324 V~d~~~ps-----------------------------~e~v~~flelL~d~~~~PVLVHCtAGKDRTG~vvaLll~llGV 374 (998)
+....... .+.+.++++++.+.. +|+||||++||||||+++|+++.++||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV 151 (164)
T PF13350_consen 73 IFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGV 151 (164)
T ss_dssp SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCC
Confidence 97543321 134567777776554 799999999999999999999999999
Q ss_pred CHHHHHHhhcccc
Q 001898 375 CASQISGQTITSN 387 (998)
Q Consensus 375 s~ddIlaDYL~SN 387 (998)
+.++|++||++||
T Consensus 152 ~~~~I~~DY~lSn 164 (164)
T PF13350_consen 152 PDEDIIADYLLSN 164 (164)
T ss_dssp -HHHHHHHHHGGG
T ss_pred CHHHHHHHHHhcC
Confidence 9999999999998
No 26
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.83 E-value=1.7e-20 Score=190.10 Aligned_cols=122 Identities=23% Similarity=0.262 Sum_probs=88.4
Q ss_pred CCCceeeeccCCcccccCCCCcceEEEcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEec
Q 001898 245 FANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPV 324 (998)
Q Consensus 245 i~Nfr~V~~~~s~d~~~~~~~~~~LYRSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV 324 (998)
..||..|. ..+||||||++.++++|+++|+||||+||++. .. .....+++..||+++|+|+
T Consensus 4 P~nF~~V~--------------~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~---~~--~~~~~f~~~~~I~l~~~~~ 64 (164)
T PF03162_consen 4 PLNFGMVE--------------PGVYRSAQPTPANFPFLERLGLKTIINLRPEP---PS--QDFLEFAEENGIKLIHIPM 64 (164)
T ss_dssp -TT-EEEE--------------TTEEEESS--HHHHHHHHHHT-SEEEE--SS--------HHHHHHHHHTT-EEEE---
T ss_pred CccccCCC--------------CCccCCCCCChhhHHHHHHCCCceEEEecCCC---CC--HHHHHHHhhcCceEEEecc
Confidence 56888887 38999999999999999999999999999874 11 2344578999999999999
Q ss_pred CCCCC----CCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHHhhcc
Q 001898 325 EVRTA----PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTIT 385 (998)
Q Consensus 325 ~d~~~----ps~e~v~~flelL~d~~~~PVLVHCtAGKDRTG~vvaLll~llGVs~ddIlaDYL~ 385 (998)
..... ++.+.+.++++++.+..++||||||..|+||||+++||+|.++||+.+.|+++|-.
T Consensus 65 ~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 65 SSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRR 129 (164)
T ss_dssp ----GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHH
T ss_pred ccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHH
Confidence 86554 56788999999877888999999999999999999999999999999999999986
No 27
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.80 E-value=4.6e-19 Score=173.90 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=95.7
Q ss_pred ceEEEcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchh--HhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc
Q 001898 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYE--AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 344 (998)
Q Consensus 267 ~~LYRSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~--a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d 344 (998)
..||||+||+++|++.|+++|||+|||||++.+ ....+ ..+.+.+...|++|+|+|+.. ..++.+++..|.+++.
T Consensus 7 ~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E-~~~~p~~~~~~~~a~~~gl~y~~iPv~~-~~~~~~~v~~f~~~~~- 83 (135)
T TIGR01244 7 EHLYVSPQLTKADAAQAAQLGFKTVINNRPDRE-EESQPDFAQIKAAAEAAGVTYHHQPVTA-GDITPDDVETFRAAIG- 83 (135)
T ss_pred CCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCC-CCCCCCHHHHHHHHHHCCCeEEEeecCC-CCCCHHHHHHHHHHHH-
Confidence 479999999999999999999999999999852 22222 123455677899999999984 4578999999999995
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHHhh
Q 001898 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQT 383 (998)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG~vvaLll~llGVs~ddIlaDY 383 (998)
..++|||+||++|| |||+++++++...|++.++|+++-
T Consensus 84 ~~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~ 121 (135)
T TIGR01244 84 AAEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRA 121 (135)
T ss_pred hCCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 56799999999999 999999999888999999998764
No 28
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=99.76 E-value=1.5e-18 Score=188.10 Aligned_cols=206 Identities=25% Similarity=0.325 Sum_probs=143.6
Q ss_pred cCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC---CCCcccCC--CCcccHHHHHHHHHccCCCCCceeeeeeeEEE
Q 001898 753 HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL---GSLGFLTS--HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLC 827 (998)
Q Consensus 753 ~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINl---G~LGFLt~--~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~ 827 (998)
..++|+||++|||||||.||+.+....+||+|||. |+-|.||- ..++....+|.++..|++.+ ..|.|++
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~~Seg~lcL~~~~~~n~~~al~k~~sgnF~w-----v~r~rir 177 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLTSGNFEW-----VLRQRIR 177 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeeecCCCCcCcceEeccccCCCCcHHHHHHHHhccHHH-----hhhheeE
Confidence 57899999999999999999988888899999997 77788773 23477888999999999764 4577777
Q ss_pred EEEEeC-Ceec---------------------------------CCcccceeeeEEEecCCCCeeEEEEEEECCEEeeeE
Q 001898 828 CEIFRN-GKAM---------------------------------PGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKV 873 (998)
Q Consensus 828 ~~V~r~-G~~v---------------------------------~~~~~~ALNDVvI~Rg~~~~~~~i~V~IDge~v~~~ 873 (998)
.++.-+ |-.. ....+.|||||+|....++++++|++.||+..+.++
T Consensus 178 ~tv~g~~gip~p~dlh~~q~s~nqr~sa~~i~~~~~s~sea~~~~~LpvlALNEVfIgE~lsarVS~y~i~idd~~~~Kq 257 (395)
T KOG4180|consen 178 GTVVGDDGIPDPIDLHDQQLSDNQRSSAKEIEETLLSHSEAVEIVALPVLALNEVFIGESLSARVSYYEISIDDKDGVKQ 257 (395)
T ss_pred EEEecCCCCCCchhhhhhhhccccccchhhHHHHHHhhhhhccccccchhhhcceeecCcccccceeEEEEecCcccccc
Confidence 776531 1100 012356899999999999999999999999999999
Q ss_pred eecEeEEcCCCChhHHhhhcC--------C---CCcCCCC------------------CceeeEEeCCC-CCCCC-Ce--
Q 001898 874 QGDGVIVATPTGSTAYSTAAG--------G---SMVHPNV------------------PCMLFTPICPH-SLSFR-PV-- 920 (998)
Q Consensus 874 rgDGLIVSTPTGSTAYsLSAG--------G---PIV~P~v------------------~aillTPIcPH-sLs~R-PI-- 920 (998)
++.|++|||.||||+|+++.. + ++..-+. ..+++.|=-|. ..+.| ||
T Consensus 258 Kssgl~vctgTGstsw~~~iNria~q~v~d~l~~l~~~~~~~vp~~Re~ve~i~~~~nq~llF~PD~p~l~fSiRepi~n 337 (395)
T KOG4180|consen 258 KSSGLVVCTGTGSTSWTFNINRIAEQAVGDLLMILLSRDNLQVPFMRELVEEISTAYNQHLLFKPDRPQLAFSIREPIFN 337 (395)
T ss_pred cCCCeeEecCCCcceEeecccHHHHHHHHHHHHHHHhcCcccchhhhhhhHHHHHHhhhcCccCCCCcchhhhhhhhhhc
Confidence 999999999999999997642 2 1111111 11112222221 11222 22
Q ss_pred -EeCCC----CEEEEEEcCCCCc-cEEEEEcCccccccCCCCEEEEEeeCc
Q 001898 921 -ILPDS----ARLELKIPDDARS-NAWVSFDGKRRQQLSRGDSVRIFMSEH 965 (998)
Q Consensus 921 -Vlp~~----s~I~I~v~~~~r~-~~~vsiDG~~~~~L~~Gd~V~I~~S~~ 965 (998)
+.|.+ ..=+|.+. +|+ ++.+.+||-..+.++.|....+...+.
T Consensus 338 ~~~~s~~~R~f~~kI~ik--srC~da~lVidG~is~~fndga~a~mev~~e 386 (395)
T KOG4180|consen 338 ATWPSTDPRGFADKICIK--SRCQDAHLVIDGGISIPFNDGALAVMEVHPE 386 (395)
T ss_pred cccCCCcccccceeEEEe--cceeeeeEEEecceEeecCcchhheeeecch
Confidence 23333 22245554 333 688999998888888887766655443
No 29
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.70 E-value=5.4e-17 Score=155.01 Aligned_cols=100 Identities=28% Similarity=0.372 Sum_probs=73.2
Q ss_pred ceEEEcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCc--hhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc
Q 001898 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNF--YEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 344 (998)
Q Consensus 267 ~~LYRSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~--~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d 344 (998)
..||.|+||+++|++.|++.|||||||||++.+ ++. ....+.+.++..|+.|+|+||. ...++.+++.+|.++++
T Consensus 7 ~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E-~~~qp~~~~~~~~a~~~Gl~y~~iPv~-~~~~~~~~v~~f~~~l~- 83 (110)
T PF04273_consen 7 DDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGE-EPGQPSSAEEAAAAEALGLQYVHIPVD-GGAITEEDVEAFADALE- 83 (110)
T ss_dssp TTEEEECS--HHHHHHHHHCT--EEEE-S-TTS-TTT-T-HHCHHHHHHHCT-EEEE-----TTT--HHHHHHHHHHHH-
T ss_pred CCeEECCCCCHHHHHHHHHCCCcEEEECCCCCC-CCCCCCHHHHHHHHHHcCCeEEEeecC-CCCCCHHHHHHHHHHHH-
Confidence 489999999999999999999999999999862 222 2235678899999999999999 56789999999999995
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHH
Q 001898 345 SSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (998)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG~vvaLll~ 370 (998)
..++|||+||.+|. |++++++|...
T Consensus 84 ~~~~Pvl~hC~sG~-Ra~~l~~l~~~ 108 (110)
T PF04273_consen 84 SLPKPVLAHCRSGT-RASALWALAQA 108 (110)
T ss_dssp TTTTSEEEE-SCSH-HHHHHHHHHHH
T ss_pred hCCCCEEEECCCCh-hHHHHHHHHhh
Confidence 56789999999999 99999998764
No 30
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.60 E-value=7.2e-15 Score=140.96 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=99.3
Q ss_pred ceEEEcCCCCHhhHHHHHhcCCcEEEEcCCCCc--CCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc
Q 001898 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERV--KDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 344 (998)
Q Consensus 267 ~~LYRSgqpT~eDl~~L~elGIKTVIDLRsee~--ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d 344 (998)
..|+.|||++++|+..++.+|||+|||.|++.+ .+|.. +.++++++..|+.|.|+||. ...++.++++.|.+.+ +
T Consensus 8 d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~-~~i~~aa~~aGl~y~~iPV~-~~~iT~~dV~~f~~Al-~ 84 (130)
T COG3453 8 DRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGF-AAIAAAAEAAGLTYTHIPVT-GGGITEADVEAFQRAL-D 84 (130)
T ss_pred cceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCCh-HHHHHHHHhcCCceEEeecC-CCCCCHHHHHHHHHHH-H
Confidence 489999999999999999999999999999962 23333 56788899999999999998 6789999999999999 4
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHH
Q 001898 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 381 (998)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG~vvaLll~llGVs~ddIla 381 (998)
...+|||.||++|. |+-.+|.+-...-|++.+++.+
T Consensus 85 eaegPVlayCrsGt-Rs~~ly~~~~~~~gm~~de~~a 120 (130)
T COG3453 85 EAEGPVLAYCRSGT-RSLNLYGLGELDGGMSRDEIEA 120 (130)
T ss_pred HhCCCEEeeecCCc-hHHHHHHHHHHhcCCCHHHHHH
Confidence 77899999999999 9999999999878999999966
No 31
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.49 E-value=1.4e-13 Score=145.38 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=108.0
Q ss_pred CCCCceeeeccCCcccccCCCCcceEEEcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEe
Q 001898 244 LFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (998)
Q Consensus 244 ~i~Nfr~V~~~~s~d~~~~~~~~~~LYRSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIP 323 (998)
..-||..|. ..|||||.|.+..+.+|..+++|+||.|+++. |+.....+++..+|+++||.
T Consensus 56 pPlnFs~V~--------------~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~-----yp~~nl~f~~~~~Ik~~~i~ 116 (249)
T KOG1572|consen 56 PPLNFSMVD--------------NGLYRSGFPRPENFSFLKTLHLKSIISLCPEP-----YPEENLNFLESNGIKLYQIG 116 (249)
T ss_pred CCccccccc--------------cceeecCCCCccchHHHHHhhhheEEEecCCC-----CChHHHHHHHhcCceEEEEe
Confidence 356777776 38999999999999999999999999999974 33344568999999999999
Q ss_pred cCCCC----CC----CHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHHhhccccccc
Q 001898 324 VEVRT----AP----TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVL 390 (998)
Q Consensus 324 V~d~~----~p----s~e~v~~flelL~d~~~~PVLVHCtAGKDRTG~vvaLll~llGVs~ddIlaDYL~SN~~~ 390 (998)
+.... .| ..+.+...++++.+..++|+|+||..||+|||++++|+|.+++|+..-|+++|+.-.-.-
T Consensus 117 ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~fa~sk 191 (249)
T KOG1572|consen 117 IEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLRFAGSK 191 (249)
T ss_pred cccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHHhccch
Confidence 98654 23 245677777777788999999999999999999999999999999999999998765443
No 32
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.48 E-value=2.6e-13 Score=131.56 Aligned_cols=106 Identities=12% Similarity=0.185 Sum_probs=82.2
Q ss_pred ceEEEcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCC-CCCHHHHHHHHHHHh--
Q 001898 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT-APTMEQVEKFASLVS-- 343 (998)
Q Consensus 267 ~~LYRSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~-~ps~e~v~~flelL~-- 343 (998)
+.||+|++|+..++++|+++||++||||+.+. .. + ...|++|+|+|+.|.. .+..+.+....++++
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~--~~-~--------~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~ 74 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKLGITHVINVTNEV--PN-L--------NKKGFTYLGVPILDNTETKISPYFPEAVEFIEDA 74 (138)
T ss_pred CCeEECChhHcCCHHHHHHcCCCEEEEccCCC--CC-C--------CCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHH
Confidence 36999999999999999999999999998864 11 1 2468999999999743 333444444444443
Q ss_pred cCCCCcEEEeCcCCCChHHHHHHHHHH-HcCCCHHHHHHhh
Q 001898 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQ-YMARCASQISGQT 383 (998)
Q Consensus 344 d~~~~PVLVHCtAGKDRTG~vvaLll~-llGVs~ddIlaDY 383 (998)
...++||||||.+|++|||+++++|++ ..|++.++|++..
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v 115 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFV 115 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 245789999999999999999777655 4799999998843
No 33
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.40 E-value=1.3e-12 Score=125.73 Aligned_cols=108 Identities=9% Similarity=0.182 Sum_probs=82.9
Q ss_pred ceEEEcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCC-HHHHHHHHHHHhc-
Q 001898 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVSN- 344 (998)
Q Consensus 267 ~~LYRSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps-~e~v~~flelL~d- 344 (998)
+.||+|+++...+.+.|+++||++||||+.+.. . ......|++|+|+|+.|...+. ...+..+.+++..
T Consensus 7 ~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~-~--------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 7 PGLYLGSYPAASDKELLKKLGITHVLNVAKEVP-N--------ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred CCeEECChhHhcCHHHHHHcCCCEEEEcccCCC-C--------cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999751 1 1234579999999998776443 3344444444431
Q ss_pred -CCCCcEEEeCcCCCChHHHHHHHH-HHHcCCCHHHHHHhh
Q 001898 345 -SSKKPLYLHSKEGVWRTYAMVSRW-RQYMARCASQISGQT 383 (998)
Q Consensus 345 -~~~~PVLVHCtAGKDRTG~vvaLl-l~llGVs~ddIlaDY 383 (998)
..++||||||.+|.+|||++++.+ +...|++.++|++..
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~v 118 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFV 118 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 346799999999999999986555 445799999998743
No 34
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=99.39 E-value=3.1e-13 Score=145.62 Aligned_cols=128 Identities=15% Similarity=0.150 Sum_probs=100.3
Q ss_pred ceEEEcCCCCHhhHH--HHHhcCCcEEEEcCCCC-cCCCchhHhhHH-hhhcCCcEEEEEecCCCCCCCHHHHHHHHHHH
Q 001898 267 VTFCRGGQVTEEGLK--WLMEKGYKTIVDIRAER-VKDNFYEAAIDD-AILSGKVELIKIPVEVRTAPTMEQVEKFASLV 342 (998)
Q Consensus 267 ~~LYRSgqpT~eDl~--~L~elGIKTVIDLRsee-~ee~~~~a~e~~-~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL 342 (998)
...|||++|.+.+.. ++..++++++|+|+.+. .....+. .+.. .....++.....+.........+.+.++++++
T Consensus 53 ~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~ 131 (249)
T COG2365 53 IIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYT-DHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLL 131 (249)
T ss_pred eeEcCCCCcccccCCccccccccccccccccccchhhhhhhh-hhhhhhccccchhhhhhccCccchhhHHHHHHHHHHH
Confidence 578999999877666 78888999999999722 1111111 1111 13445566666666656667788899999988
Q ss_pred hcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHHhhccccccccchhh
Q 001898 343 SNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDST 395 (998)
Q Consensus 343 ~d~~~~PVLVHCtAGKDRTG~vvaLll~llGVs~ddIlaDYL~SN~~~~~~~~ 395 (998)
.+..++|||+||++||||||+++||++.++|++.+++.+||+.+|.+......
T Consensus 132 ~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 132 ADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred hhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 76667999999999999999999999999999999999999999999998866
No 35
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.27 E-value=2.7e-11 Score=129.47 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=84.3
Q ss_pred HhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeC
Q 001898 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHS 354 (998)
Q Consensus 277 ~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d--~~~~PVLVHC 354 (998)
+..++.|++.||++||++.... |. .+.++..||+|+++|+.|...|+.+.+.+|+++++. ..+++|+|||
T Consensus 106 ~~yl~eLk~~gV~~lVrlcE~~-----Yd---~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC 177 (241)
T PTZ00393 106 PLYIKEMKNYNVTDLVRTCERT-----YN---DGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHC 177 (241)
T ss_pred HHHHHHHHHcCCCEEEECCCCC-----CC---HHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 5778999999999999996643 21 244678899999999999999999999999988753 3567999999
Q ss_pred cCCCChHHHHHHHHHHHcCCCHHHHHHhh
Q 001898 355 KEGVWRTYAMVSRWRQYMARCASQISGQT 383 (998)
Q Consensus 355 tAGKDRTG~vvaLll~llGVs~ddIlaDY 383 (998)
.+|.+|||+++++|+...|++.++|++--
T Consensus 178 ~AGlGRTGtl~AayLI~~GmspeeAI~~V 206 (241)
T PTZ00393 178 VAGLGRAPVLASIVLIEFGMDPIDAIVFI 206 (241)
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999888899999998743
No 36
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.24 E-value=7.9e-11 Score=120.04 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=85.1
Q ss_pred eEEEcCCCCH----hhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 001898 268 TFCRGGQVTE----EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (998)
Q Consensus 268 ~LYRSgqpT~----eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~ 343 (998)
+|.--..|++ ++++.|++.||+.||++..+. +. .+.++..|++|.++|+.|...|+.+.+.+|++++.
T Consensus 17 r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~-----~~---~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~ 88 (166)
T PTZ00242 17 KFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT-----YD---AELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLD 88 (166)
T ss_pred EEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC-----CC---HHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHH
Confidence 4555555654 677999999999999996543 21 13466789999999999888999988888877764
Q ss_pred c------CCCCcEEEeCcCCCChHHHHHHHHHHHc-CCCHHHHHHhh
Q 001898 344 N------SSKKPLYLHSKEGVWRTYAMVSRWRQYM-ARCASQISGQT 383 (998)
Q Consensus 344 d------~~~~PVLVHCtAGKDRTG~vvaLll~ll-GVs~ddIlaDY 383 (998)
. ..++||+|||.+|.+|||+++++++... |++.++|++..
T Consensus 89 ~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~v 135 (166)
T PTZ00242 89 QEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFV 135 (166)
T ss_pred HHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3 2478999999999999999988887654 49999998854
No 37
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.19 E-value=2.9e-11 Score=116.23 Aligned_cols=105 Identities=15% Similarity=0.290 Sum_probs=81.2
Q ss_pred EEEcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCC-CCCCCHHHHHHHHHHHhc--C
Q 001898 269 FCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV-RTAPTMEQVEKFASLVSN--S 345 (998)
Q Consensus 269 LYRSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d-~~~ps~e~v~~flelL~d--~ 345 (998)
||.|+.+... .++|+++||++|||++.+. ..+ ......+++|+++|+.| ...+..+.+..+.+++.+ .
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~-~~~-------~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~ 71 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEEC-PNP-------YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAIS 71 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSS-STS-------HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHH
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCC-cCc-------hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhc
Confidence 6899998888 9999999999999999875 111 22356789999999987 334444455555555542 4
Q ss_pred CCCcEEEeCcCCCChHHHHHHHHHHH-cCCCHHHHHHh
Q 001898 346 SKKPLYLHSKEGVWRTYAMVSRWRQY-MARCASQISGQ 382 (998)
Q Consensus 346 ~~~PVLVHCtAGKDRTG~vvaLll~l-lGVs~ddIlaD 382 (998)
.+++|||||.+|.+|||++++.|++. .|++.++|++-
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 109 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEY 109 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHH
Confidence 57899999999999999998777665 79999999873
No 38
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.16 E-value=5.1e-11 Score=121.24 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=62.9
Q ss_pred HhhHHHHHhcCCcEEEEcCCCCcCCCch-hHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHH----HHHHhcCCCCcEE
Q 001898 277 EEGLKWLMEKGYKTIVDIRAERVKDNFY-EAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKF----ASLVSNSSKKPLY 351 (998)
Q Consensus 277 ~eDl~~L~elGIKTVIDLRsee~ee~~~-~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~f----lelL~d~~~~PVL 351 (998)
..|++.|++.|++.||.|-+..+ -..+ .....+.++..||.|+|+||.|...|+.+...++ .+.+ ..++.|+
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~E-L~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L--~~g~~V~ 137 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDHE-LARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARL--ENGRKVL 137 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HHH-HHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHH--HTT--EE
T ss_pred HHHHHHHHHCCCCEEEEeCcHHH-HHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHH--HcCCEEE
Confidence 67899999999999999988751 1111 0234577889999999999999999987654443 3344 3467999
Q ss_pred EeCcCCCChHHHHHHHHHHHcC--CCHHHHH
Q 001898 352 LHSKEGVWRTYAMVSRWRQYMA--RCASQIS 380 (998)
Q Consensus 352 VHCtAGKDRTG~vvaLll~llG--Vs~ddIl 380 (998)
+||..|.+|||+++|+++..+| +++++|+
T Consensus 138 vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 138 VHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp EE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 9999999999999999988766 6777764
No 39
>PRK12361 hypothetical protein; Provisional
Probab=99.12 E-value=4.2e-10 Score=133.31 Aligned_cols=108 Identities=15% Similarity=0.247 Sum_probs=86.8
Q ss_pred ceEEEcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--
Q 001898 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-- 344 (998)
Q Consensus 267 ~~LYRSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d-- 344 (998)
+.||.|+++++.|++.|++.||++||||+.+. +...+ .....+++|+++|+.|...|+.+++.+..+++++
T Consensus 100 ~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~-~~~~~------~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~ 172 (547)
T PRK12361 100 ENLYLGCRLFPADLEKLKSNKITAILDVTAEF-DGLDW------SLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQV 172 (547)
T ss_pred CcEEECCCCCcccHHHHHHcCCCEEEEccccc-ccccc------cccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999653 11111 1223689999999999888998888888777753
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHH--cCCCHHHHHH
Q 001898 345 SSKKPLYLHSKEGVWRTYAMVSRWRQY--MARCASQISG 381 (998)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG~vvaLll~l--lGVs~ddIla 381 (998)
..+++|||||.+|.+|++++++.|++. .+++.++|++
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~ 211 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQ 211 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHH
Confidence 346799999999999999998888764 3678877743
No 40
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=98.77 E-value=2.4e-08 Score=104.69 Aligned_cols=94 Identities=17% Similarity=0.319 Sum_probs=78.8
Q ss_pred HHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcC-CCCcEEEeCcCCC
Q 001898 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNS-SKKPLYLHSKEGV 358 (998)
Q Consensus 280 l~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~-~~~PVLVHCtAGK 358 (998)
+..++...+++|+-|...- |+ ++.....||.++++|+.|+..|+++.+.+|+++++.. ..+.|.|||++|-
T Consensus 87 ~~~~~~~~v~s~vrln~~~-----yd---~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGl 158 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRL-----YD---AKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGL 158 (225)
T ss_pred HHHhhhcccceEEEcCCCC-----CC---hHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCC
Confidence 4566677999999996542 22 3556788999999999999999999999999998632 2589999999999
Q ss_pred ChHHHHHHHHHHH-cCCCHHHHHH
Q 001898 359 WRTYAMVSRWRQY-MARCASQISG 381 (998)
Q Consensus 359 DRTG~vvaLll~l-lGVs~ddIla 381 (998)
+|||++.|+|+++ .|+++.|+++
T Consensus 159 GRTG~liAc~lmy~~g~ta~eaI~ 182 (225)
T KOG1720|consen 159 GRTGTLIACYLMYEYGMTAGEAIA 182 (225)
T ss_pred CchhHHHHHHHHHHhCCCHHHHHH
Confidence 9999998888765 6999999987
No 41
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=98.73 E-value=8.7e-07 Score=96.84 Aligned_cols=109 Identities=26% Similarity=0.279 Sum_probs=74.9
Q ss_pred CEEEEEecC--Ch-hHHHHHHHHHHHHhcCCCeEEEEcCChhh-HhhcCCCCccceeeeccCcccccCCccEEEEEcCCc
Q 001898 691 RTVLVLKKP--GP-ALMEEAKEVASFLYHQEKMNILVEPDVHD-IFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (998)
Q Consensus 691 k~VlIv~K~--~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~-~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDG 766 (998)
++++||..| +. ...+.+.++.++|.+ .++++.+...... .... . . ......++|+||++||||
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~~~~~~~---------~-~--~~~~~~~~d~ivv~GGDG 68 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWEKGDAAR---------Y-V--EEARKFGVDTVIAGGGDG 68 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecCcccHHH---------H-H--HHHHhcCCCEEEEECCCC
Confidence 688888888 43 345667788888854 4666544222110 0000 0 0 011234689999999999
Q ss_pred hHHHHHHhccC-CCCcEEE-EeCCCCcccCC-CC-cccHHHHHHHHHccC
Q 001898 767 VILHASNLFRG-AVPPVIS-FNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (998)
Q Consensus 767 TlL~Aar~~~~-~~~PVLG-INlG~LGFLt~-~~-~eel~~~L~~il~G~ 812 (998)
|+..+++.+.. ...|.+| |+.|+.++|+. +. +++..++++.+.+|+
T Consensus 69 Tl~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~ 118 (293)
T TIGR00147 69 TINEVVNALIQLDDIPALGILPLGTANDFARSLGIPEDLDKAAKLVIAGD 118 (293)
T ss_pred hHHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCC
Confidence 99999987754 4557788 89999999997 66 678888999888876
No 42
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.28 E-value=3.1e-06 Score=85.51 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=78.8
Q ss_pred hhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCC-CCCCHHHHHHHHHHHhc--CCCCcEEEeC
Q 001898 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR-TAPTMEQVEKFASLVSN--SSKKPLYLHS 354 (998)
Q Consensus 278 eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~-~~ps~e~v~~flelL~d--~~~~PVLVHC 354 (998)
.|.+.++++|+..||.+..+. +...+ -...+..||+++.+|..|. ..|+.+.+.+..+++.. ..++-++|||
T Consensus 42 ~~~~~i~ke~v~gvv~~ne~y--E~~a~---s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHC 116 (183)
T KOG1719|consen 42 MDVPLIKKENVGGVVTLNEPY--ELLAP---SNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHC 116 (183)
T ss_pred ccchHHHhcCCCeEEEeCCch--hhhhh---hHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEe
Confidence 567789999999999997764 11111 1246789999999998765 46889999888887753 4467899999
Q ss_pred cCCCChHHHHHHHHHH-HcCCCHHHHHH
Q 001898 355 KEGVWRTYAMVSRWRQ-YMARCASQISG 381 (998)
Q Consensus 355 tAGKDRTG~vvaLll~-llGVs~ddIla 381 (998)
+||..|+.++++||++ .-+|+.++|.+
T Consensus 117 KAGRtRSaTvV~cYLmq~~~wtpe~A~~ 144 (183)
T KOG1719|consen 117 KAGRTRSATVVACYLMQHKNWTPEAAVE 144 (183)
T ss_pred cCCCccchhhhhhhhhhhcCCCHHHHHH
Confidence 9999999999999876 46999999876
No 43
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.21 E-value=6.1e-06 Score=81.72 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=84.0
Q ss_pred eEEEcCCCCHhh----HHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 001898 268 TFCRGGQVTEEG----LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (998)
Q Consensus 268 ~LYRSgqpT~eD----l~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~ 343 (998)
+|..--.|+... ++.|++.|++|||-..... | +...++..||..+..|+.|...|..+.++.+++++.
T Consensus 18 rFLIThnPtnaTln~fieELkKygvttvVRVCe~T-----Y---dt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~ 89 (173)
T KOG2836|consen 18 RFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPT-----Y---DTTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVK 89 (173)
T ss_pred EEEEecCCCchhHHHHHHHHHhcCCeEEEEecccc-----c---CCchhhhcCceEeecccccCCCCchHHHHHHHHHHH
Confidence 344445565443 5678899999999998765 2 123467889999999999988888888888887664
Q ss_pred ----cCCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHH
Q 001898 344 ----NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 381 (998)
Q Consensus 344 ----d~~~~PVLVHCtAGKDRTG~vvaLll~llGVs~ddIla 381 (998)
+..+.-|.|||-||-+|+.+++|+.+...|+..++|++
T Consensus 90 ~~f~e~p~~cvavhcvaglgrapvlvalalie~gmkyedave 131 (173)
T KOG2836|consen 90 TKFREEPGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVE 131 (173)
T ss_pred HHHhhCCCCeEEEEeecccCcchHHHHHHHHHccccHHHHHH
Confidence 23345699999999999999999999999999999976
No 44
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.20 E-value=2.9e-06 Score=85.29 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=47.7
Q ss_pred hHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcC-CCCcEEEeCcCCCChHHHHHHHHHH
Q 001898 308 IDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNS-SKKPLYLHSKEGVWRTYAMVSRWRQ 370 (998)
Q Consensus 308 e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~-~~~PVLVHCtAGKDRTG~vvaLll~ 370 (998)
+.+.++..|+.|++||+.|...|.++.+.+|++++... .+..+.|||.+|++||.++.+++.+
T Consensus 84 e~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~l 147 (149)
T PF14566_consen 84 EEELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDL 147 (149)
T ss_dssp HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999643 3457999999999999999666543
No 45
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.15 E-value=5.8e-06 Score=85.38 Aligned_cols=76 Identities=14% Similarity=0.278 Sum_probs=58.6
Q ss_pred hhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeCcCCCChHHHHHHHHHHH--cCCCHHHHHHhhccc
Q 001898 311 AILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHSKEGVWRTYAMVSRWRQY--MARCASQISGQTITS 386 (998)
Q Consensus 311 ~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d--~~~~PVLVHCtAGKDRTG~vvaLll~l--lGVs~ddIlaDYL~S 386 (998)
..+..|+.++++|+.|...|+.+++.++.++|.+ ..++.|+|||.+|.+|||++++-|+++ .+...+++++-....
T Consensus 67 ~~~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~ 146 (180)
T COG2453 67 IEENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRR 146 (180)
T ss_pred eeccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 3466799999999999999999988888887763 345599999999999999997644333 466677776644433
No 46
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.06 E-value=1.8e-05 Score=87.35 Aligned_cols=110 Identities=14% Similarity=0.195 Sum_probs=82.4
Q ss_pred cceEEEcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCH----HHHHHHHHH
Q 001898 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM----EQVEKFASL 341 (998)
Q Consensus 266 ~~~LYRSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~----e~v~~flel 341 (998)
.+.+|-|.+..+.+...|.++||..|+|+.... .... .....+++|.++|+.|....+. +....|++.
T Consensus 79 ~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~--~~~~------~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~ 150 (285)
T KOG1716|consen 79 LPNLYLGSQGVASDPDLLKKLGITHVLNVSSSC--PNPR------FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEK 150 (285)
T ss_pred cCCceecCcccccchhhHHHcCCCEEEEecccC--Cccc------cccccCceEEeccccCCccccHHHHHHHHHHHHHH
Confidence 358899999999999999999999999998764 1110 1223489999999997655443 233445555
Q ss_pred HhcCCCCcEEEeCcCCCChHHHH-HHHHHHHcCCCHHHHHHhhc
Q 001898 342 VSNSSKKPLYLHSKEGVWRTYAM-VSRWRQYMARCASQISGQTI 384 (998)
Q Consensus 342 L~d~~~~PVLVHCtAGKDRTG~v-vaLll~llGVs~ddIlaDYL 384 (998)
+. ..++.|||||.+|..|+-++ +|.+....|++.++|++-.-
T Consensus 151 a~-~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk 193 (285)
T KOG1716|consen 151 AR-EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVK 193 (285)
T ss_pred HH-hCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 42 45789999999999999988 56666778999999976443
No 47
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.91 E-value=3.7e-05 Score=83.47 Aligned_cols=105 Identities=15% Similarity=0.217 Sum_probs=76.9
Q ss_pred ceEEEcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHH-HHHHHHHHHhc-
Q 001898 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTME-QVEKFASLVSN- 344 (998)
Q Consensus 267 ~~LYRSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e-~v~~flelL~d- 344 (998)
+.||-|+.-+...++-|+++||++|||..+.- -+.+ -....+.|..||+.|..--... .+.+.+.+|.+
T Consensus 177 p~LYLg~a~ds~NldvLkk~gI~yviNVTpnl--pn~f-------e~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeA 247 (343)
T KOG1717|consen 177 PNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL--PNNF-------ENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEA 247 (343)
T ss_pred cchhcccccccccHHHHHhcCceEEEecCCCC--cchh-------hcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHh
Confidence 47899998888899999999999999997753 1112 1345689999999865433322 23444555543
Q ss_pred -CCCCcEEEeCcCCCChHHHH-HHHHHHHcCCCHHHHH
Q 001898 345 -SSKKPLYLHSKEGVWRTYAM-VSRWRQYMARCASQIS 380 (998)
Q Consensus 345 -~~~~PVLVHCtAGKDRTG~v-vaLll~llGVs~ddIl 380 (998)
..+--|||||-+|..|+-++ +|+++..+..+.++|+
T Consensus 248 rsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAy 285 (343)
T KOG1717|consen 248 RSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAY 285 (343)
T ss_pred hccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHH
Confidence 34567999999999999998 5555666788888884
No 48
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.71 E-value=4.4e-05 Score=69.32 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=37.2
Q ss_pred EEEEecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCcCCCChHHHHHHHHHHH
Q 001898 319 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQY 371 (998)
Q Consensus 319 yIhIPV~d~~~ps~-e~v~~flelL~d~-----~~~PVLVHCtAGKDRTG~vvaLll~l 371 (998)
|.+.+..+...|.. +.+..|++.+... .++||+|||.+|++|||+++++++..
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~ 63 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILL 63 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHH
Confidence 33444555555644 6777777766431 26799999999999999998777664
No 49
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.71 E-value=4.4e-05 Score=69.32 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=37.2
Q ss_pred EEEEecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCcCCCChHHHHHHHHHHH
Q 001898 319 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQY 371 (998)
Q Consensus 319 yIhIPV~d~~~ps~-e~v~~flelL~d~-----~~~PVLVHCtAGKDRTG~vvaLll~l 371 (998)
|.+.+..+...|.. +.+..|++.+... .++||+|||.+|++|||+++++++..
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~ 63 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILL 63 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHH
Confidence 33444555555644 6777777766431 26799999999999999998777664
No 50
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.71 E-value=0.00024 Score=73.07 Aligned_cols=103 Identities=13% Similarity=0.183 Sum_probs=72.8
Q ss_pred ceEEEcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCC-HHHHHHHHHHHh--
Q 001898 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVS-- 343 (998)
Q Consensus 267 ~~LYRSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps-~e~v~~flelL~-- 343 (998)
..||.|.-....+-..|++.||..|||-..+.. .. ...+++|+.+|+.|..... -+.++...+.+.
T Consensus 22 ~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~p-n~----------~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v 90 (198)
T KOG1718|consen 22 PSLFLSNGVAANDKLLLKKRKITCIINATTEVP-NT----------SLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSV 90 (198)
T ss_pred cceeEeccccccCHHHHHhcCceEEEEcccCCC-Cc----------cCCCceeEEEEcccCCcchhhhhhhHHHHHHHHH
Confidence 378888555666677899999999999987641 11 2358999999998643221 233333333332
Q ss_pred cCCCCcEEEeCcCCCChHHHHH-HHHHHHcCCCHHHHH
Q 001898 344 NSSKKPLYLHSKEGVWRTYAMV-SRWRQYMARCASQIS 380 (998)
Q Consensus 344 d~~~~PVLVHCtAGKDRTG~vv-aLll~llGVs~ddIl 380 (998)
....+..|+||.||..|+..+. |.++.+-+++.-||.
T Consensus 91 ~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy 128 (198)
T KOG1718|consen 91 IMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAY 128 (198)
T ss_pred HhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHH
Confidence 2457899999999999999985 555667889988884
No 51
>PRK13057 putative lipid kinase; Reviewed
Probab=97.60 E-value=0.01 Score=65.34 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=48.1
Q ss_pred cCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCCCcccCCC-C-cccHHHHHHHHHccC
Q 001898 753 HERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSH-P-FEDYRQDLRQVIYGN 812 (998)
Q Consensus 753 ~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINlG~LGFLt~~-~-~eel~~~L~~il~G~ 812 (998)
..++|.||++|||||+-.+++.+....+|+.-|.+|+-.-++.. . +.+++++++.+..|.
T Consensus 48 ~~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~ 109 (287)
T PRK13057 48 ADGVDLVIVGGGDGTLNAAAPALVETGLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQ 109 (287)
T ss_pred HcCCCEEEEECchHHHHHHHHHHhcCCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCC
Confidence 35679999999999999999988777889888899987655532 2 457888898888776
No 52
>PRK00861 putative lipid kinase; Reviewed
Probab=97.53 E-value=0.038 Score=61.26 Aligned_cols=107 Identities=13% Similarity=0.226 Sum_probs=65.5
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEcCChhh--HhhcCCCCccceeeeccCcccccCCccEEEEEcCC
Q 001898 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDVHD--IFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (998)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~~l~~~L~~~~gi~V~ve~~~~~--~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGD 765 (998)
++++||..|.. .......++...|.+...+.++......+ .+. .....+..|+||++|||
T Consensus 3 ~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a---------------~~~~~~~~d~vv~~GGD 67 (300)
T PRK00861 3 RSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLA---------------QEAIERGAELIIASGGD 67 (300)
T ss_pred ceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHH---------------HHHHhcCCCEEEEECCh
Confidence 57788877763 22344567777775432344444322111 110 01113467999999999
Q ss_pred chHHHHHHhccCCCCcEEEEeCCCCcccC-CCC-cccHHHHHHHHHccC
Q 001898 766 GVILHASNLFRGAVPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (998)
Q Consensus 766 GTlL~Aar~~~~~~~PVLGINlG~LGFLt-~~~-~eel~~~L~~il~G~ 812 (998)
||+=.++..+....+|+-=|-.|+-.-++ .+. +.++.++++.+.+|.
T Consensus 68 GTl~evv~~l~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~ 116 (300)
T PRK00861 68 GTLSAVAGALIGTDIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGK 116 (300)
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCC
Confidence 99999999887777776556777643222 222 346788888888876
No 53
>PRK12361 hypothetical protein; Provisional
Probab=97.20 E-value=0.057 Score=64.98 Aligned_cols=241 Identities=14% Similarity=0.129 Sum_probs=125.2
Q ss_pred CCEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEcCCh--hhHhhcCCCCccceeeeccCcccccCCccEEEEEcC
Q 001898 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (998)
Q Consensus 690 pk~VlIv~K~~~---~~~~~a~~l~~~L~~~~gi~V~ve~~~--~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGG 764 (998)
.++++||..|.. ...+.+.++.+.|.+...++++..... +..+. ..-..+++|.||++||
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~la---------------~~~~~~~~d~Viv~GG 306 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEALA---------------KQARKAGADIVIACGG 306 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHHHH---------------HHHHhcCCCEEEEECC
Confidence 456777777663 234567788888864322333332211 11110 0011345799999999
Q ss_pred CchHHHHHHhccCCCCcEEEEeCCCCcccCC-C---C--cccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecC
Q 001898 765 DGVILHASNLFRGAVPPVISFNLGSLGFLTS-H---P--FEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMP 838 (998)
Q Consensus 765 DGTlL~Aar~~~~~~~PVLGINlG~LGFLt~-~---~--~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~ 838 (998)
|||+=.++..+.+.++|+-=|-+|+---++- + . ..+..++++.+.+|... .+.. +.+ +++
T Consensus 307 DGTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~~~----~iD~-----g~v--n~~--- 372 (547)
T PRK12361 307 DGTVTEVASELVNTDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGHTQ----RIDT-----ARC--NDR--- 372 (547)
T ss_pred CcHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCCCe----EEEE-----EEE--cCe---
Confidence 9999999988877777755557776432221 1 1 14677788888877631 1111 011 111
Q ss_pred CcccceeeeEEEe----------c------CCC------------CeeEEEEEEECCEEeeeEeecEeEEcCCCChhHH-
Q 001898 839 GKVFDVLNEVVVD----------R------GSN------------PYLSKIECYEHDRLITKVQGDGVIVATPTGSTAY- 889 (998)
Q Consensus 839 ~~~~~ALNDVvI~----------R------g~~------------~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAY- 889 (998)
+.+|=+.|. + |.. .+...+.|.+||+.......--++|+- |+.-+
T Consensus 373 ----~fln~agiG~da~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~l~i~~dg~~~~~~~~~~l~v~N--~~~~~~ 446 (547)
T PRK12361 373 ----LMLLLVGIGFEQKMIESADRERKNALGQLAYLDGLWRAVNENETLTLTVTLDDAEPQTISTHSLVVAN--AAPFTS 446 (547)
T ss_pred ----EEEEEEeechhHHHHHhccHHHHhccCHHHHHHHHHHHhhcCCCeeEEEEECCCCceEEEEEEEEEEc--CCCccc
Confidence 122322220 0 000 022467788898765555666666654 21100
Q ss_pred hhhcCCCCcCCC---CCceeeEEeCCC---CC--------------CCCCeEeCCCCEEEEEEcCCCCccEEEEEcCccc
Q 001898 890 STAAGGSMVHPN---VPCMLFTPICPH---SL--------------SFRPVILPDSARLELKIPDDARSNAWVSFDGKRR 949 (998)
Q Consensus 890 sLSAGGPIV~P~---v~aillTPIcPH---sL--------------s~RPIVlp~~s~I~I~v~~~~r~~~~vsiDG~~~ 949 (998)
.+.-||+.-.++ ++.+++.+..+. .+ ....+..-...+|+|+.. ....+.+||...
T Consensus 447 ~~~~Ggg~~~~~DG~Ldv~~v~~~~~~~~~l~~l~~~~~~g~~~~~~~~~v~~~~~k~v~I~~~----~~~~~~iDGE~~ 522 (547)
T PRK12361 447 LLAQGGGEPNMTDGLLDITWLDSGGEPGEQLLSLAELALSGLGKEPEANKVHHAHAKKVTISSQ----KPIKYVIDGELF 522 (547)
T ss_pred ccccCCCCCCCCCceeEEEEEcCCCcchHHHHHHHHHHHHHhcccCCCCceEEEEeeEEEEEeC----CceEEEECCccC
Confidence 122355443333 344444442210 00 011111112234455432 346788999864
Q ss_pred cccCCCCEEEEEeeCceeeEEecC
Q 001898 950 QQLSRGDSVRIFMSEHPIPTVNKS 973 (998)
Q Consensus 950 ~~L~~Gd~V~I~~S~~~l~lV~~~ 973 (998)
. .+.++|+..+..++++.+.
T Consensus 523 ~----~~p~~i~v~p~al~vlvp~ 542 (547)
T PRK12361 523 E----DEDLTIEVQPASLKVFVPY 542 (547)
T ss_pred C----ceEEEEEEecCceEEEecC
Confidence 2 3679999999999998754
No 54
>PRK13059 putative lipid kinase; Reviewed
Probab=97.14 E-value=0.093 Score=58.30 Aligned_cols=108 Identities=15% Similarity=0.213 Sum_probs=63.5
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE-cCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCc
Q 001898 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (998)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~~l~~~L~~~~gi~V~v-e~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDG 766 (998)
++++||..|.. ...+.+.++.++|.+ .+.++.+ ......... .......+.+|.||++||||
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~-------------~~~~~~~~~~d~vi~~GGDG 67 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISLEYDLK-------------NAFKDIDESYKYILIAGGDG 67 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccCcchHH-------------HHHHHhhcCCCEEEEECCcc
Confidence 46777777763 234556778888864 4665443 111111000 00112235679999999999
Q ss_pred hHHHHHHhccC--CCCcEEEEeCCCCcccC-CCC-cccHHHHHHHHHccC
Q 001898 767 VILHASNLFRG--AVPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (998)
Q Consensus 767 TlL~Aar~~~~--~~~PVLGINlG~LGFLt-~~~-~eel~~~L~~il~G~ 812 (998)
|+=.+++-+.. ..+|+-=|-+|+---++ .+. +.+..++++.+..|.
T Consensus 68 Tv~evv~gl~~~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~ 117 (295)
T PRK13059 68 TVDNVVNAMKKLNIDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSK 117 (295)
T ss_pred HHHHHHHHHHhcCCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCC
Confidence 99888887653 34665445777632222 111 456778888888876
No 55
>PRK13055 putative lipid kinase; Reviewed
Probab=97.00 E-value=0.13 Score=58.15 Aligned_cols=106 Identities=11% Similarity=0.171 Sum_probs=61.7
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeE--EEEcC-C--hhhHhhcCCCCccceeeeccCcccccCCccEEEEE
Q 001898 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMN--ILVEP-D--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 762 (998)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~~l~~~L~~~~gi~--V~ve~-~--~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvL 762 (998)
++++||..|.. ...+.+.++...|.+ .+++ ++... . -+..+.. ......+|+||++
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~~~~~~a~~~~~---------------~~~~~~~d~vvv~ 66 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTTPEPNSAKNEAK---------------RAAEAGFDLIIAA 66 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEeecCCccHHHHHH---------------HHhhcCCCEEEEE
Confidence 67888887763 234556778888854 4554 33222 1 1111110 0112457999999
Q ss_pred cCCchHHHHHHhccCC--CCcEEEEeCCCCcccC-CCC-cc-cHHHHHHHHHccC
Q 001898 763 GGDGVILHASNLFRGA--VPPVISFNLGSLGFLT-SHP-FE-DYRQDLRQVIYGN 812 (998)
Q Consensus 763 GGDGTlL~Aar~~~~~--~~PVLGINlG~LGFLt-~~~-~e-el~~~L~~il~G~ 812 (998)
|||||+=.+++-+... .+|+-=|-+|+---++ .+. +. +..++++.+..|.
T Consensus 67 GGDGTl~evvngl~~~~~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~ 121 (334)
T PRK13055 67 GGDGTINEVVNGIAPLEKRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQ 121 (334)
T ss_pred CCCCHHHHHHHHHhhcCCCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCC
Confidence 9999998888876542 3444335677632222 111 23 5777888888776
No 56
>PRK13337 putative lipid kinase; Reviewed
Probab=96.89 E-value=0.11 Score=57.71 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=60.5
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEE--EEcCChhh--HhhcCCCCccceeeeccCcccccCCccEEEEEc
Q 001898 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNI--LVEPDVHD--IFARIPGFGFVQTFYLQDTSDLHERVDFVACLG 763 (998)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~~l~~~L~~~~gi~V--~ve~~~~~--~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLG 763 (998)
++++||..|.. .....+.++.+.|.+ .++++ +..+...+ .+. . .-..+.+|+||++|
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~~~~a~~~a-------------~--~~~~~~~d~vvv~G 65 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTGPGDATLAA-------------E--RAVERKFDLVIAAG 65 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecCCCCHHHHH-------------H--HHHhcCCCEEEEEc
Confidence 57788877763 223456677777754 45553 32221111 010 0 01124579999999
Q ss_pred CCchHHHHHHhccCC--CCcEEEEeCCCCcccCC-CC-cccHHHHHHHHHccC
Q 001898 764 GDGVILHASNLFRGA--VPPVISFNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (998)
Q Consensus 764 GDGTlL~Aar~~~~~--~~PVLGINlG~LGFLt~-~~-~eel~~~L~~il~G~ 812 (998)
||||+=.++.-+... .+|+-=|-.|+---++- +. +.++.++++.+..|.
T Consensus 66 GDGTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~ 118 (304)
T PRK13337 66 GDGTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGH 118 (304)
T ss_pred CCCHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCC
Confidence 999998888865433 34544446675433221 11 346777888888776
No 57
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=96.79 E-value=0.0024 Score=67.53 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcC----CCCcEEEeCcCCCChHHHHHHHHHHH------cCCCHHHHHH
Q 001898 332 MEQVEKFASLVSNS----SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISG 381 (998)
Q Consensus 332 ~e~v~~flelL~d~----~~~PVLVHCtAGKDRTG~vvaLll~l------lGVs~ddIla 381 (998)
.+.+.+|++.+... ..+|++|||.+|.+|||+++++...+ ..++..+++.
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~ 206 (231)
T cd00047 147 PDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVK 206 (231)
T ss_pred hHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 36777777766533 36799999999999999997766432 1355555544
No 58
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=96.45 E-value=0.0059 Score=65.86 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHhcC---CCCcEEEeCcCCCChHHHHHHHHHHH------cCCCHHHHHHh
Q 001898 331 TMEQVEKFASLVSNS---SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISGQ 382 (998)
Q Consensus 331 s~e~v~~flelL~d~---~~~PVLVHCtAGKDRTG~vvaLll~l------lGVs~ddIlaD 382 (998)
+.+.+.+|++.+... ..+|++|||.+|.+|||+++++...+ ..++..+++..
T Consensus 174 ~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~ 234 (258)
T smart00194 174 SPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKE 234 (258)
T ss_pred CHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHH
Confidence 456677777766432 16799999999999999997765432 23555555543
No 59
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=96.38 E-value=0.72 Score=51.94 Aligned_cols=235 Identities=20% Similarity=0.248 Sum_probs=124.1
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE---cCC-hhhHhhcCCCCccceeeeccCcccccCCccEEEEEc
Q 001898 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV---EPD-VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLG 763 (998)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~~l~~~L~~~~gi~V~v---e~~-~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLG 763 (998)
+++.++..+.. .......++.+.|.+. +.++.+ +.. -+..+. ..-..+.+|.||+.|
T Consensus 3 ~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~-g~~~~~~~t~~~g~a~~~a---------------~~a~~~~~D~via~G 66 (301)
T COG1597 3 KKALLIYNPTSGKGKAKKLLREVEELLEEA-GHELSVRVTEEAGDAIEIA---------------REAAVEGYDTVIAAG 66 (301)
T ss_pred ceEEEEEcccccccchhhHHHHHHHHHHhc-CCeEEEEEeecCccHHHHH---------------HHHHhcCCCEEEEec
Confidence 56666665543 2455677888888653 443332 111 011110 011123789999999
Q ss_pred CCchHHHHHHhccCCCCcEEEE-eCCCCcccC---CCCcccHHHHHHHHHccCCCCCceeeeeeeEEEEEEEeCCeecCC
Q 001898 764 GDGVILHASNLFRGAVPPVISF-NLGSLGFLT---SHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPG 839 (998)
Q Consensus 764 GDGTlL~Aar~~~~~~~PVLGI-NlG~LGFLt---~~~~eel~~~L~~il~G~~~i~~~~i~~R~rL~~~V~r~G~~v~~ 839 (998)
||||+=.++.-+...+.|.||| -+|+--=++ .++.+++.++++.+.+|+. |..--+.+ +++
T Consensus 67 GDGTv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~~---------~~vDlg~~--~~~---- 131 (301)
T COG1597 67 GDGTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLDDIEAALELIKSGET---------RKVDLGQV--NGR---- 131 (301)
T ss_pred CcchHHHHHHHHhcCCCCceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCCe---------EEEeehhc--CCc----
Confidence 9999999998777666664665 566543222 2444468899999988862 11111111 221
Q ss_pred cccceeeeEEEec----------------C------------CCCeeEEEEEEECCEEeeeEeecEeEEcCCCChhHHhh
Q 001898 840 KVFDVLNEVVVDR----------------G------------SNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYST 891 (998)
Q Consensus 840 ~~~~ALNDVvI~R----------------g------------~~~~~~~i~V~IDge~v~~~rgDGLIVSTPTGSTAYsL 891 (998)
.+.+|=+.+.- + ..-+...++|.+|++.+. ++.+.+..-.+-
T Consensus 132 --~~fin~a~~G~~a~~~~~~~~~~k~~~g~~~y~~~~~~~l~~~~~~~~~i~~d~~~~~---~~~~~~~~~~~~----- 201 (301)
T COG1597 132 --RYFINNAGIGFDAEVVAAVEEERKKGFGRLAYALAGLAVLARLKPFRIEIEYDGKTFE---GEALALLVFNGN----- 201 (301)
T ss_pred --ceEEEEeecchhHHHHHhhcHHHHhccchHHHHHHHHHhccccCCCcEEEEEcCcEEE---EEEEEEEEecCc-----
Confidence 02233222210 0 001235677888887643 333333332222
Q ss_pred hcCC-CCcCCC-------CCceeeEEeCCCC-------------CCCCCeEeCCCCEEEEEEcCCCCccEEEEEcCcccc
Q 001898 892 AAGG-SMVHPN-------VPCMLFTPICPHS-------------LSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQ 950 (998)
Q Consensus 892 SAGG-PIV~P~-------v~aillTPIcPHs-------------Ls~RPIVlp~~s~I~I~v~~~~r~~~~vsiDG~~~~ 950 (998)
+.|| ..+.|+ .+.+++.+.+... .....+......+++|... ....+.+||....
T Consensus 202 ~~gg~~~~~p~a~~~dG~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~~~----~~~~~~~DGE~~~ 277 (301)
T COG1597 202 SYGGGMKLAPDASLDDGLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAKKLEITSD----PPIPVNLDGEYLG 277 (301)
T ss_pred ccccccccCCcCCCCCceEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEEEeccEEEEEcC----CCceEeeCCccCC
Confidence 4444 444443 3444444543211 1111233334444555433 3567999998764
Q ss_pred ccCCCCEEEEEeeCceeeEEecCC
Q 001898 951 QLSRGDSVRIFMSEHPIPTVNKSD 974 (998)
Q Consensus 951 ~L~~Gd~V~I~~S~~~l~lV~~~~ 974 (998)
..+ +.|+.-+..++++.+.+
T Consensus 278 ~~p----~~i~~~p~al~vl~p~~ 297 (301)
T COG1597 278 KTP----VTIEVLPGALRVLVPPD 297 (301)
T ss_pred CCc----EEEEEecccEEEEcCCC
Confidence 443 89999999888886654
No 60
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.24 E-value=0.0034 Score=68.78 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHhcC--CCCcEEEeCcCCCChHHHHHHHHHH
Q 001898 327 RTAPTMEQVEKFASLVSNS--SKKPLYLHSKEGVWRTYAMVSRWRQ 370 (998)
Q Consensus 327 ~~~ps~e~v~~flelL~d~--~~~PVLVHCtAGKDRTG~vvaLll~ 370 (998)
...|+...+.+++.-+.+. ..+|++|||.||.||||+++|+-..
T Consensus 196 ~~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~l 241 (302)
T COG5599 196 FNVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDIL 241 (302)
T ss_pred cCCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHH
Confidence 3455566667777766544 5789999999999999999776543
No 61
>PRK11914 diacylglycerol kinase; Reviewed
Probab=96.19 E-value=0.029 Score=62.34 Aligned_cols=109 Identities=25% Similarity=0.307 Sum_probs=68.5
Q ss_pred CCEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEE--EEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcC
Q 001898 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNI--LVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (998)
Q Consensus 690 pk~VlIv~K~~~---~~~~~a~~l~~~L~~~~gi~V--~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGG 764 (998)
+++++||..|.. ...+.+.++.+.|.+ .++++ +......+. ... . .....+.+|+||++||
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~~~~~~-~~~-----a-------~~~~~~~~d~vvv~GG 73 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGTDAHDA-RHL-----V-------AAALAKGTDALVVVGG 73 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeCCHHHH-HHH-----H-------HHHHhcCCCEEEEECC
Confidence 478888888763 345667788888854 45553 332221111 000 0 0112345799999999
Q ss_pred CchHHHHHHhccCCCCcEEEEeCCCCcccC-CCC--cccHHHHHHHHHccC
Q 001898 765 DGVILHASNLFRGAVPPVISFNLGSLGFLT-SHP--FEDYRQDLRQVIYGN 812 (998)
Q Consensus 765 DGTlL~Aar~~~~~~~PVLGINlG~LGFLt-~~~--~eel~~~L~~il~G~ 812 (998)
|||+=.++..+...++|+-=|-.|+--=++ .+. .++.+++++.+..|.
T Consensus 74 DGTi~evv~~l~~~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~g~ 124 (306)
T PRK11914 74 DGVISNALQVLAGTDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGW 124 (306)
T ss_pred chHHHHHhHHhccCCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHcCC
Confidence 999999998877777786666778653333 222 246778888888776
No 62
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=95.59 E-value=0.02 Score=65.07 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=49.3
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCCCcccC--CCCcccHHHHHHHHHccCCC
Q 001898 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLT--SHPFEDYRQDLRQVIYGNNT 814 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINlG~LGFLt--~~~~eel~~~L~~il~G~~~ 814 (998)
..+|+|+.+|||||.=-++.-. +.++|||||.+|.-=|.. .++|++....+..+++|++.
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av-~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~lkg~~r 160 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAV-GADVPVLGIPAGVKNYSGVFALSPEDAARLLGAFLKGNAR 160 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhc-cCCCceEeeccccceeccccccChHHHHHHHHHHhccccc
Confidence 3799999999999987777766 678999999999765543 46789998899999999643
No 63
>PRK13054 lipid kinase; Reviewed
Probab=95.32 E-value=0.071 Score=59.24 Aligned_cols=107 Identities=21% Similarity=0.183 Sum_probs=62.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE--cCChh--hHhhcCCCCccceeeeccCcccccCCccEEEEEcCC
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV--EPDVH--DIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~v--e~~~~--~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGD 765 (998)
+++++||..++........++..+|.+ .++++.+ .+... ..+. .....+++|.||++|||
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a---------------~~~~~~~~d~vvv~GGD 66 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLRE-EGHTLHVRVTWEKGDAARYV---------------EEALALGVATVIAGGGD 66 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHH-cCCEEEEEEecCCCcHHHHH---------------HHHHHcCCCEEEEECCc
Confidence 467777777665444556667777754 4555433 22111 1110 01113457999999999
Q ss_pred chHHHHHHhccCC----CCcEEEEeCCCCcccC-CCC-cccHHHHHHHHHccC
Q 001898 766 GVILHASNLFRGA----VPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (998)
Q Consensus 766 GTlL~Aar~~~~~----~~PVLGINlG~LGFLt-~~~-~eel~~~L~~il~G~ 812 (998)
||+=.+++-+... .+|+-=|-.|+---++ .+. +.+..++++.+.+|.
T Consensus 67 GTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~ 119 (300)
T PRK13054 67 GTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGR 119 (300)
T ss_pred cHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCC
Confidence 9999988876532 3455445677532222 121 346778888888776
No 64
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=95.31 E-value=0.023 Score=63.75 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=19.4
Q ss_pred CCcEEEeCcCCCChHHHHHHHH
Q 001898 347 KKPLYLHSKEGVWRTYAMVSRW 368 (998)
Q Consensus 347 ~~PVLVHCtAGKDRTG~vvaLl 368 (998)
.+|++|||.+|.+|||++.++-
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiD 242 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFD 242 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHH
Confidence 5799999999999999996554
No 65
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=95.11 E-value=0.062 Score=63.97 Aligned_cols=55 Identities=27% Similarity=0.251 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHhcC------------CCCcEEEeCcCCCChHHHHHHHHHHH-c-CCCHHHHHHhhccc
Q 001898 331 TMEQVEKFASLVSNS------------SKKPLYLHSKEGVWRTYAMVSRWRQY-M-ARCASQISGQTITS 386 (998)
Q Consensus 331 s~e~v~~flelL~d~------------~~~PVLVHCtAGKDRTG~vvaLll~l-l-GVs~ddIlaDYL~S 386 (998)
+.+.+..|++.+... ...| +|||.||.+|||++++++... . -++.++|+.|.-.+
T Consensus 439 ST~~LleLvr~Vr~~~q~~~~~~~~~nk~~P-VVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~q 507 (535)
T PRK15375 439 STDQLEYLADRVKNSNQNGAPGRSSSDKHLP-MIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNS 507 (535)
T ss_pred ChHHHHHHHHHHHHhhhcccccccccCCCCc-eEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 445577776655321 1235 799999999999998887542 1 36788888876554
No 66
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=95.06 E-value=0.024 Score=63.48 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.4
Q ss_pred CCcEEEeCcCCCChHHHHHHHH
Q 001898 347 KKPLYLHSKEGVWRTYAMVSRW 368 (998)
Q Consensus 347 ~~PVLVHCtAGKDRTG~vvaLl 368 (998)
.+|++|||.+|.+|||++.++-
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid 250 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAID 250 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHH
Confidence 4799999999999999997654
No 67
>PLN02727 NAD kinase
Probab=94.79 E-value=0.032 Score=70.07 Aligned_cols=81 Identities=11% Similarity=-0.084 Sum_probs=71.2
Q ss_pred ccccCCC-CCcccccccccccccCCCCCCCCCCCCCCCCCCccCCCCccccCCccCccccCCCccccccccccccccccc
Q 001898 523 SEIVSSG-PVSGVAETRYSQWSLSGNNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLD 601 (998)
Q Consensus 523 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (998)
+++.+.+ +.+++++.++|||++++++.+++.|++...+.+++||+++++|++..|.... ++..+.+ +++|++
T Consensus 533 ~kn~s~d~qss~~~~~k~sNGss~~s~~s~s~~Ss~~~~~~~~ng~~stsv~~nl~~~v~-----s~s~res--~s~Ng~ 605 (986)
T PLN02727 533 EKNSSPKYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGASSSTVSDNLERSVA-----SVSVRES--QRSNGK 605 (986)
T ss_pred ccccCccccchhhccccCCCCccccccCcccccccccCCccccCCCccccccCCCccccc-----ccccccc--cccCCc
Confidence 6677777 8899999999999999999999999999999999999999999999888876 4555555 788999
Q ss_pred ccccccccc
Q 001898 602 EQVISSSVR 610 (998)
Q Consensus 602 ~~~~~~~~~ 610 (998)
.++.+++-.
T Consensus 606 a~vgssd~~ 614 (986)
T PLN02727 606 ASLGSSDDE 614 (986)
T ss_pred cccccccCc
Confidence 999887765
No 68
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=94.69 E-value=0.023 Score=66.79 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=61.8
Q ss_pred HHHHhc--CCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHH----HHHhcCCCCcEEEeC
Q 001898 281 KWLMEK--GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFA----SLVSNSSKKPLYLHS 354 (998)
Q Consensus 281 ~~L~el--GIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~fl----elL~d~~~~PVLVHC 354 (998)
.+|... |=-.|.||+.+. .|. ....-=+...+|+.|..+|+.+.+..|- .++......=+.+||
T Consensus 45 ~fL~s~H~~~y~vyNL~~er----~yd------~~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHC 114 (434)
T KOG2283|consen 45 LFLDSKHKDHYKVYNLSSER----LYD------PSRFHGRVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHC 114 (434)
T ss_pred HHHhhccCCceEEEecCccc----cCC------ccccccceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEc
Confidence 345443 444599999743 111 0111223455899999999998877654 455434445689999
Q ss_pred cCCCChHHHHHHHHHHHcC--CCHHHHHHhhccc
Q 001898 355 KEGVWRTYAMVSRWRQYMA--RCASQISGQTITS 386 (998)
Q Consensus 355 tAGKDRTG~vvaLll~llG--Vs~ddIlaDYL~S 386 (998)
++||+|||+|+..++.+.| .++++|++-|...
T Consensus 115 k~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~k 148 (434)
T KOG2283|consen 115 KAGKGRTGVMICAYLIYSGISATAEEALDYFNEK 148 (434)
T ss_pred cCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhh
Confidence 9999999999544444434 3478887777655
No 69
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=94.59 E-value=0.085 Score=54.12 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=52.6
Q ss_pred HHHhcCCcEEEEcCCCCcCCCchhHhh-HHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc-CCCCcEEEeCcCCCC
Q 001898 282 WLMEKGYKTIVDIRAERVKDNFYEAAI-DDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-SSKKPLYLHSKEGVW 359 (998)
Q Consensus 282 ~L~elGIKTVIDLRsee~ee~~~~a~e-~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d-~~~~PVLVHCtAGKD 359 (998)
+....|-+.+|.|+...... ..++.. .+.-....++=+..|=..+..|.++++...++++.. ....|+||||.+|..
T Consensus 27 ~~~rh~~t~mlsl~a~~t~~-~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGIS 105 (172)
T COG5350 27 TAARHGPTHMLSLLAKGTYF-HRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGIS 105 (172)
T ss_pred HHhhcCCceEEEeecccccc-cCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccccc
Confidence 44456899999999864111 111000 011111122223333333456788999999988853 345799999999999
Q ss_pred hHHHHHHHH
Q 001898 360 RTYAMVSRW 368 (998)
Q Consensus 360 RTG~vvaLl 368 (998)
|+.++++..
T Consensus 106 RStA~A~i~ 114 (172)
T COG5350 106 RSTAAALIA 114 (172)
T ss_pred cchHHHHHH
Confidence 999986553
No 70
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=94.56 E-value=0.037 Score=62.28 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.5
Q ss_pred CcEEEeCcCCCChHHHHHHHHH
Q 001898 348 KPLYLHSKEGVWRTYAMVSRWR 369 (998)
Q Consensus 348 ~PVLVHCtAGKDRTG~vvaLll 369 (998)
+|++|||.+|.+|||+++++-.
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi 251 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDI 251 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHH
Confidence 6999999999999999976643
No 71
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=94.55 E-value=0.039 Score=69.53 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhc--CC-CCcEEEeCcCCCChHHHHH----HHHHHH--cCCCHHHHHH
Q 001898 332 MEQVEKFASLVSN--SS-KKPLYLHSKEGVWRTYAMV----SRWRQY--MARCASQISG 381 (998)
Q Consensus 332 ~e~v~~flelL~d--~~-~~PVLVHCtAGKDRTG~vv----aLll~l--lGVs~ddIla 381 (998)
..++..|++.+.. .. +-||++||.||.+|||+++ ++.+.. .-++.-+|+.
T Consensus 1045 ~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr 1103 (1144)
T KOG0792|consen 1045 PNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVR 1103 (1144)
T ss_pred hHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHH
Confidence 4555556555532 22 5599999999999999983 333322 4566666654
No 72
>PLN02160 thiosulfate sulfurtransferase
Probab=94.41 E-value=0.17 Score=50.31 Aligned_cols=87 Identities=16% Similarity=0.276 Sum_probs=52.2
Q ss_pred CCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCC----CCCCHHHHHHHHHHHhcCCCCcE
Q 001898 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR----TAPTMEQVEKFASLVSNSSKKPL 350 (998)
Q Consensus 275 pT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~----~~ps~e~v~~flelL~d~~~~PV 350 (998)
++++++..+.+.+ ..|||.|+..+ | ..-...|...+++|+... ...+.+.+..+...+ ..+.||
T Consensus 17 i~~~e~~~~~~~~-~~lIDVR~~~E----~-----~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~--~~~~~I 84 (136)
T PLN02160 17 VDVSQAKTLLQSG-HQYLDVRTQDE----F-----RRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLL--NPADDI 84 (136)
T ss_pred eCHHHHHHHHhCC-CEEEECCCHHH----H-----hcCCCCCcceecccchhcCcccccCCHHHHHHHHhcc--CCCCcE
Confidence 5777888777667 47999999751 1 111123434577886321 111233333333333 346799
Q ss_pred EEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 351 YLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 351 LVHCtAGKDRTG~vvaLll~llGVs 375 (998)
++||..|. |+..++..+.. .|..
T Consensus 85 ivyC~sG~-RS~~Aa~~L~~-~G~~ 107 (136)
T PLN02160 85 LVGCQSGA-RSLKATTELVA-AGYK 107 (136)
T ss_pred EEECCCcH-HHHHHHHHHHH-cCCC
Confidence 99999998 99988766643 5654
No 73
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=94.34 E-value=0.051 Score=61.53 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.4
Q ss_pred CcEEEeCcCCCChHHHHHHHHH
Q 001898 348 KPLYLHSKEGVWRTYAMVSRWR 369 (998)
Q Consensus 348 ~PVLVHCtAGKDRTG~vvaLll 369 (998)
+|++|||.+|.+|||+++++-.
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~ 269 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDN 269 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHH
Confidence 7999999999999999976543
No 74
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=94.31 E-value=0.046 Score=56.93 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHhc---CCCCcEEEeCcCCCChHHHHHHHHHH
Q 001898 331 TMEQVEKFASLVSN---SSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (998)
Q Consensus 331 s~e~v~~flelL~d---~~~~PVLVHCtAGKDRTG~vvaLll~ 370 (998)
+.+.+..|++.+.. ....|++|||.+|.+|||+++++...
T Consensus 151 ~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~ 193 (235)
T PF00102_consen 151 SPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDIL 193 (235)
T ss_dssp SSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHH
T ss_pred ccchhhhhhhhccccccCCccceEeecccccccccccccchhh
Confidence 34555565555432 35689999999999999999776654
No 75
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=94.30 E-value=0.18 Score=55.82 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=39.1
Q ss_pred CCccEEEEEcCCchHHHHHHhccCC----CCcEEEEeCCCCc-ccCCCC-cccHHHHHHHHHccC
Q 001898 754 ERVDFVACLGGDGVILHASNLFRGA----VPPVISFNLGSLG-FLTSHP-FEDYRQDLRQVIYGN 812 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~----~~PVLGINlG~LG-FLt~~~-~eel~~~L~~il~G~ 812 (998)
.+.|.||++|||||+=.++.-+... .+|+-=|-+|+-- |--.+. +.+.+++++.++.|.
T Consensus 51 ~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~ 115 (293)
T TIGR03702 51 LGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPLGTANDFATAAGIPLEPAKALKLALNGA 115 (293)
T ss_pred cCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHhCC
Confidence 4579999999999998888766422 2344435677542 222222 456778888888776
No 76
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=94.28 E-value=0.058 Score=52.54 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=27.4
Q ss_pred ccEEEEEcCCchHHHHHHhccCCCC----cEEEEeCCCC
Q 001898 756 VDFVACLGGDGVILHASNLFRGAVP----PVISFNLGSL 790 (998)
Q Consensus 756 ~DlVIvLGGDGTlL~Aar~~~~~~~----PVLGINlG~L 790 (998)
.|.||++|||||+=.++..+..... |+.=|.+|+-
T Consensus 55 ~~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~GT~ 93 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPAGTG 93 (130)
T ss_dssp -SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-SSS
T ss_pred ccEEEEEcCccHHHHHHHHHhhcCCCccceEEEecCCCh
Confidence 5999999999999999998876654 6666678864
No 77
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=94.25 E-value=0.15 Score=47.06 Aligned_cols=85 Identities=15% Similarity=0.054 Sum_probs=46.4
Q ss_pred CHhhHHHHHhcCC-cEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 001898 276 TEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (998)
Q Consensus 276 T~eDl~~L~elGI-KTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHC 354 (998)
+++++..+.+.|= -.|||.|+++ + +. .....| -+++|+......-.+........+ ..+.||++||
T Consensus 2 s~~el~~~l~~~~~~~liDvR~~~--e--~~-----~ghi~g--a~~ip~~~~~~~~~~~~~~~~~~~--~~~~~ivv~C 68 (100)
T cd01523 2 DPEDLYARLLAGQPLFILDVRNES--D--YE-----RWKIDG--ENNTPYFDPYFDFLEIEEDILDQL--PDDQEVTVIC 68 (100)
T ss_pred CHHHHHHHHHcCCCcEEEEeCCHH--H--Hh-----hcccCC--CcccccccchHHHHHhhHHHHhhC--CCCCeEEEEc
Confidence 5667776655542 4799999975 1 11 111122 245665421110001112233333 3567999999
Q ss_pred cCCCChHHHHHHHHHHHcCCC
Q 001898 355 KEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 355 tAGKDRTG~vvaLll~llGVs 375 (998)
..|. |+..++..+.. +|.+
T Consensus 69 ~~G~-rs~~aa~~L~~-~G~~ 87 (100)
T cd01523 69 AKEG-SSQFVAELLAE-RGYD 87 (100)
T ss_pred CCCC-cHHHHHHHHHH-cCce
Confidence 9998 88777666644 5764
No 78
>PHA02738 hypothetical protein; Provisional
Probab=93.74 E-value=0.055 Score=61.17 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.1
Q ss_pred CCcEEEeCcCCCChHHHHHHHH
Q 001898 347 KKPLYLHSKEGVWRTYAMVSRW 368 (998)
Q Consensus 347 ~~PVLVHCtAGKDRTG~vvaLl 368 (998)
.+|++|||.+|.+|||++.|+-
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaid 248 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVD 248 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHH
Confidence 3699999999999999986554
No 79
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=93.65 E-value=0.27 Score=45.53 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=47.3
Q ss_pred CCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 001898 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (998)
Q Consensus 274 qpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVH 353 (998)
.++++++..+.+.+=-.|||.|++. + +. .....| -+++|+..... ..+.+.+ +.....+.||+||
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~-e---~~-----~ghi~g--A~~ip~~~~~~-~~~~~~~---~~~~~~~~~ivvy 67 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDY-E---YD-----IGHFKG--AVNPDVDTFRE-FPFWLDE---NLDLLKGKKVLMY 67 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChh-h---hh-----cCEecc--ccCCCcccHhH-hHHHHHh---hhhhcCCCEEEEE
Confidence 3577787776655445799999874 1 10 011122 34566542110 0111222 1111456799999
Q ss_pred CcCCCChHHHHHHHHHHHcCCC
Q 001898 354 SKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 354 CtAGKDRTG~vvaLll~llGVs 375 (998)
|..|. |+..++..+ ..+|..
T Consensus 68 C~~G~-rs~~a~~~L-~~~G~~ 87 (101)
T cd01518 68 CTGGI-RCEKASAYL-KERGFK 87 (101)
T ss_pred CCCch-hHHHHHHHH-HHhCCc
Confidence 99998 998776554 445764
No 80
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=93.52 E-value=0.28 Score=46.09 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=47.4
Q ss_pred CCCCHhhHHHHHhcCC-cEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEE
Q 001898 273 GQVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLY 351 (998)
Q Consensus 273 gqpT~eDl~~L~elGI-KTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVL 351 (998)
..++++++..+.+.|= -.|||.|+.. + |. .....| -+|+|+ ..+...+..+....+.|++
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~--e--~~-----~ghIpg--ainip~--------~~l~~~~~~l~~~~~~~iv 70 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFD--E--YR-----KMTIPG--SVSCPG--------AELVLRVGELAPDPRTPIV 70 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHH--H--Hh-----cCcCCC--ceeCCH--------HHHHHHHHhcCCCCCCeEE
Confidence 3467888887766552 3699999864 1 11 001111 234443 2344444444223467999
Q ss_pred EeCcCCCChHHHHHHHHHHHcCCC
Q 001898 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 352 VHCtAGKDRTG~vvaLll~llGVs 375 (998)
|||..|. |+..++..+ ..+|.+
T Consensus 71 v~C~~G~-rs~~a~~~L-~~~G~~ 92 (109)
T cd01533 71 VNCAGRT-RSIIGAQSL-INAGLP 92 (109)
T ss_pred EECCCCc-hHHHHHHHH-HHCCCC
Confidence 9999998 886655444 446764
No 81
>PLN02204 diacylglycerol kinase
Probab=92.95 E-value=0.99 Score=55.28 Aligned_cols=113 Identities=22% Similarity=0.345 Sum_probs=61.0
Q ss_pred ccceeEeeecCcceeeeee---cCCCccccCCchhhHhccc-----------ccCCCEEEEEecCCh---hHHHHHHHHH
Q 001898 649 KAEMFLVRTDGFSCNREKV---TESSLAFTHPSTQQQMLMW-----------KTTPRTVLVLKKPGP---ALMEEAKEVA 711 (998)
Q Consensus 649 ~~~~~~~~~~~~~c~~~~~---~~s~~~~~~ps~~~~~l~w-----------~~~pk~VlIv~K~~~---~~~~~a~~l~ 711 (998)
..+|+.+--.++.++|-.. ....+.|.|++.+. -..| ...+|+++||..|.. ...+...++.
T Consensus 105 ~~~~~~f~v~~~~~~~~~~~~w~~~~~~f~~~d~~~-~~~w~~~l~~~l~~~~~r~k~llVivNP~sGkg~~~~~~~~V~ 183 (601)
T PLN02204 105 TQEMYRFTVHGFQRSRKEPCLWVLAVYTFGHKDLQT-CQSWVDRLNASLNKEVGRPKNLLVFVHPLSGKGSGSRTWETVS 183 (601)
T ss_pred cccceeeEEEEeeecccCCCcceeEEEeecCCCHHH-HHHHHHHHHHHHhhccCCCceEEEEECCCCCCcchHHHHHHHH
Confidence 3455544444444444332 22346666665543 2334 246889998888752 3445566777
Q ss_pred HHHhcCCCeE--EEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchHHHHHHh
Q 001898 712 SFLYHQEKMN--ILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVILHASNL 774 (998)
Q Consensus 712 ~~L~~~~gi~--V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTlL~Aar~ 774 (998)
..|.+ .+++ |++.+...+... .. ....+ ....+|.||++||||||=.+++-
T Consensus 184 p~f~~-a~i~~~v~~T~~aghA~d------~~-----~~~~~~~l~~~D~VVaVGGDGt~nEVlNG 237 (601)
T PLN02204 184 PIFIR-AKVKTKVIVTERAGHAFD------VM-----ASISNKELKSYDGVIAVGGDGFFNEILNG 237 (601)
T ss_pred HHHHH-cCCeEEEEEecCcchHHH------HH-----HHHhhhhccCCCEEEEEcCccHHHHHHHH
Confidence 77754 3444 555443221110 00 00011 13468999999999997666653
No 82
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=92.40 E-value=1.3 Score=54.35 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcC---CCCcEEEeCcCCCChHHHH----HHHHHHHcCCCHHHHHH
Q 001898 333 EQVEKFASLVSNS---SKKPLYLHSKEGVWRTYAM----VSRWRQYMARCASQISG 381 (998)
Q Consensus 333 e~v~~flelL~d~---~~~PVLVHCtAGKDRTG~v----vaLll~llGVs~ddIla 381 (998)
..+..|.+-++.. ..-||+|||..|.+|||+- +.|-+++.|+-.-||.+
T Consensus 910 rslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaA 965 (1004)
T KOG0793|consen 910 RSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAA 965 (1004)
T ss_pred HHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHH
Confidence 4567777766431 2349999999999999987 34446677888777754
No 83
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=92.02 E-value=0.62 Score=55.76 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=63.8
Q ss_pred cccCCCEEEEEecCCh---hHHHHH-HHHHHHHhcCCCeEEEE--cCChhhHhhcCCCCccceeeeccCcccccCCccEE
Q 001898 686 WKTTPRTVLVLKKPGP---ALMEEA-KEVASFLYHQEKMNILV--EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFV 759 (998)
Q Consensus 686 w~~~pk~VlIv~K~~~---~~~~~a-~~l~~~L~~~~gi~V~v--e~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlV 759 (998)
+...|++++||..|.. ...... .++...|.+ .++++-+ .+...+... .. . .-....+|.|
T Consensus 107 ~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~~~ghA~~------la-----~--~~~~~~~D~V 172 (481)
T PLN02958 107 SLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETKYQLHAKE------VV-----R--TMDLSKYDGI 172 (481)
T ss_pred hccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEeccCccHHHH------HH-----H--HhhhcCCCEE
Confidence 3346899999988763 233443 346667754 4555433 222111100 00 0 0012457999
Q ss_pred EEEcCCchHHHHHHhccCC-------CCcEEEEeCCCC-cccCCC-----CcccHHHHHHHHHccC
Q 001898 760 ACLGGDGVILHASNLFRGA-------VPPVISFNLGSL-GFLTSH-----PFEDYRQDLRQVIYGN 812 (998)
Q Consensus 760 IvLGGDGTlL~Aar~~~~~-------~~PVLGINlG~L-GFLt~~-----~~eel~~~L~~il~G~ 812 (998)
|++||||||=.+++-+... .+|+-=|-+|+- +|-..+ .+.+..+++..++.|.
T Consensus 173 V~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~ 238 (481)
T PLN02958 173 VCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGH 238 (481)
T ss_pred EEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCC
Confidence 9999999988888765432 456544567753 222222 1446677888888887
No 84
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=91.94 E-value=0.74 Score=43.92 Aligned_cols=95 Identities=9% Similarity=-0.013 Sum_probs=50.2
Q ss_pred CHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCC---------CCCCHHHHHHHHHHHhcCC
Q 001898 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR---------TAPTMEQVEKFASLVSNSS 346 (998)
Q Consensus 276 T~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~---------~~ps~e~v~~flelL~d~~ 346 (998)
+++++..+.+.+--.|||.|+.++..... .+-..-...|. +++|..+. ..++.+.+.+++..+....
T Consensus 3 ~~~~l~~~l~~~~~~ivDvR~~~~~~~~~--~~~~~ghI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd01448 3 SPDWLAEHLDDPDVRILDARWYLPDRDGR--KEYLEGHIPGA--VFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISN 78 (122)
T ss_pred CHHHHHHHhCCCCeEEEEeecCCCCCchh--hHHhhCCCCCC--EEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 55666665544335799999974110000 01011122332 55664321 2244566666665443345
Q ss_pred CCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 347 KKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 347 ~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
+.||+++|..|-.|+..++.++ ..+|.+
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHH-HHcCCC
Confidence 7899999999733555554444 446765
No 85
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=91.38 E-value=0.2 Score=58.19 Aligned_cols=102 Identities=20% Similarity=0.270 Sum_probs=67.5
Q ss_pred CCCHhh-HHHHHhcCC--cEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCC-CCCHHHHHHHHHHHhc-----
Q 001898 274 QVTEEG-LKWLMEKGY--KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT-APTMEQVEKFASLVSN----- 344 (998)
Q Consensus 274 qpT~eD-l~~L~elGI--KTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~-~ps~e~v~~flelL~d----- 344 (998)
+.++.+ +..|+++|+ --+|||.... ..| .....+..|+.|+.+--.... .|+.+.+..|..++..
T Consensus 47 ~f~~~dl~~~l~~~~~~vgl~iDltnt~---ryy---~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~ 120 (393)
T KOG2386|consen 47 RFQPKDLFELLKEHNYKVGLKIDLTNTL---RYY---DKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDT 120 (393)
T ss_pred ccCHHHHHHHHHhcCceEEEEEecccee---eee---ccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcc
Confidence 344444 566777654 5689997654 223 234567789999998766444 5667777776665542
Q ss_pred -CCCCcEEEeCcCCCChHHHHH-HHHHHHcCCCHHHHHH
Q 001898 345 -SSKKPLYLHSKEGVWRTYAMV-SRWRQYMARCASQISG 381 (998)
Q Consensus 345 -~~~~PVLVHCtAGKDRTG~vv-aLll~llGVs~ddIla 381 (998)
..+.=|++||++|+.|||.++ +++..-.+++..+|++
T Consensus 121 ~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik 159 (393)
T KOG2386|consen 121 KLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIK 159 (393)
T ss_pred cCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHH
Confidence 123449999999999999994 4443445677777765
No 86
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=91.23 E-value=0.26 Score=56.57 Aligned_cols=47 Identities=28% Similarity=0.363 Sum_probs=31.3
Q ss_pred CCCCCCC-HHHHHHHHHHHh---cCCCCcEEEeCcCCCChHHHHHHHHHHH
Q 001898 325 EVRTAPT-MEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQY 371 (998)
Q Consensus 325 ~d~~~ps-~e~v~~flelL~---d~~~~PVLVHCtAGKDRTG~vvaLll~l 371 (998)
.|...|+ ...+.+|.+.+. .....|++|||.||.+|||++.|+=+.+
T Consensus 261 Pd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LL 311 (374)
T KOG0791|consen 261 PDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLL 311 (374)
T ss_pred cccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHH
Confidence 3344442 333444443332 3457899999999999999998887654
No 87
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.21 E-value=0.23 Score=56.91 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.1
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHH
Q 001898 345 SSKKPLYLHSKEGVWRTYAMVSRW 368 (998)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG~vvaLl 368 (998)
...+|++|||.+|.+|||+++++-
T Consensus 297 ~~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 297 PKQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCCeEEECCCCCCccchHHHHH
Confidence 345799999999999999997544
No 88
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=91.04 E-value=0.25 Score=48.26 Aligned_cols=35 Identities=34% Similarity=0.535 Sum_probs=27.5
Q ss_pred CccEEEEEcCCchHHHHHHhccCCC-----CcEEEEeCCC
Q 001898 755 RVDFVACLGGDGVILHASNLFRGAV-----PPVISFNLGS 789 (998)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~~~~-----~PVLGINlG~ 789 (998)
..|.||++|||||+=.++..+.... +|+.=|-+|+
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 4789999999999999998765433 6666667775
No 89
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=89.85 E-value=1 Score=41.55 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=47.8
Q ss_pred HhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcE-EEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 001898 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVE-LIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (998)
Q Consensus 277 ~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~-yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHCt 355 (998)
......+...+--.|||.|.+. + +. ..+-.. .+|+|+.+... +........++|++++|.
T Consensus 9 ~~~~~~~~~~~~~~liDvR~~~-e---~~-------~~~i~~~~~~ip~~~~~~--------~~~~~~~~~~~~ivv~C~ 69 (110)
T COG0607 9 EDEAALLLAGEDAVLLDVREPE-E---YE-------RGHIPGAAINIPLSELKA--------AENLLELPDDDPIVVYCA 69 (110)
T ss_pred HHHHHHhhccCCCEEEeccChh-H---hh-------hcCCCcceeeeecccchh--------hhcccccCCCCeEEEEeC
Confidence 3344555566788999999984 1 11 111122 77888873211 111110245789999999
Q ss_pred CCCChHHHHHHHHHHHcCCCH
Q 001898 356 EGVWRTYAMVSRWRQYMARCA 376 (998)
Q Consensus 356 AGKDRTG~vvaLll~llGVs~ 376 (998)
+|. |++.++..+.. +|...
T Consensus 70 ~G~-rS~~aa~~L~~-~G~~~ 88 (110)
T COG0607 70 SGV-RSAAAAAALKL-AGFTN 88 (110)
T ss_pred CCC-ChHHHHHHHHH-cCCcc
Confidence 999 99888777765 46443
No 90
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=89.16 E-value=1.7 Score=39.28 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=43.6
Q ss_pred CCHhhHHHHHhcCC-cEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 001898 275 VTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (998)
Q Consensus 275 pT~eDl~~L~elGI-KTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVH 353 (998)
++++++..+.+.+- -.|||+|+.. + +. .......| -+++|. ..+...+..+ ..+.|++||
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~-e---~~---~~~~hi~g--a~~ip~--------~~~~~~~~~~--~~~~~ivv~ 62 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPA-S---YA---ALPDHIPG--AIHLDE--------DSLDDWLGDL--DRDRPVVVY 62 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHH-H---Hh---cccCCCCC--CeeCCH--------HHHHHHHhhc--CCCCCEEEE
Confidence 45667766555432 4699999863 0 10 00000111 223333 2444444444 457799999
Q ss_pred CcCCCChHHHHHHHHHHHcCCC
Q 001898 354 SKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 354 CtAGKDRTG~vvaLll~llGVs 375 (998)
|..|. |+..++..+.. +|.+
T Consensus 63 c~~g~-~s~~a~~~l~~-~G~~ 82 (96)
T cd01444 63 CYHGN-SSAQLAQALRE-AGFT 82 (96)
T ss_pred eCCCC-hHHHHHHHHHH-cCCc
Confidence 99887 77776555543 4654
No 91
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=89.10 E-value=1.2 Score=41.06 Aligned_cols=87 Identities=24% Similarity=0.209 Sum_probs=46.5
Q ss_pred CHhhHHHHHh-cCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCC---CCCHHHHHHHHHHHhcCCCCcEE
Q 001898 276 TEEGLKWLME-KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT---APTMEQVEKFASLVSNSSKKPLY 351 (998)
Q Consensus 276 T~eDl~~L~e-lGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~---~ps~e~v~~flelL~d~~~~PVL 351 (998)
+.+++..+.+ .+=-+|||.|+..+ +. .-...|. +++|+.... .++.+.+.+++.......+.||+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e----~~-----~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 70 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEE----LK-----TGKIPGA--INIPLSSLPDALALSEEEFEKKYGFPKPSKDKELI 70 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHH----Hh-----cCcCCCc--EEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEE
Confidence 3455555544 43357999998741 11 0111222 456654211 22334444444332223467999
Q ss_pred EeCcCCCChHHHHHHHHHHHcCCC
Q 001898 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 352 VHCtAGKDRTG~vvaLll~llGVs 375 (998)
++|..|. |+..++.++ ..+|..
T Consensus 71 v~c~~g~-~s~~~~~~l-~~~G~~ 92 (106)
T cd01519 71 FYCKAGV-RSKAAAELA-RSLGYE 92 (106)
T ss_pred EECCCcH-HHHHHHHHH-HHcCCc
Confidence 9999997 776654444 446764
No 92
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=88.92 E-value=1.6 Score=40.37 Aligned_cols=81 Identities=11% Similarity=0.210 Sum_probs=46.0
Q ss_pred CCCHhhHHHHHhcC--CcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc-CCCCcE
Q 001898 274 QVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-SSKKPL 350 (998)
Q Consensus 274 qpT~eDl~~L~elG--IKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d-~~~~PV 350 (998)
|++++++..+.+.+ --.|||+|+.+ + +. .....|. +++|+. .+..+.+.+.. ..+.|+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~--e--~~-----~~hI~ga--~~ip~~--------~~~~~~~~~~~~~~~~~v 61 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPE--E--LE-----IAFLPGF--LHLPMS--------EIPERSKELDSDNPDKDI 61 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHH--H--Hh-----cCcCCCC--EecCHH--------HHHHHHHHhcccCCCCeE
Confidence 46777777666554 34799999864 1 10 0111222 344432 33334444422 246799
Q ss_pred EEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 351 YLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 351 LVHCtAGKDRTG~vvaLll~llGVs 375 (998)
+++|..|. |+-..+..+.. +|.+
T Consensus 62 v~~c~~g~-rs~~~~~~l~~-~G~~ 84 (101)
T cd01528 62 VVLCHHGG-RSMQVAQWLLR-QGFE 84 (101)
T ss_pred EEEeCCCc-hHHHHHHHHHH-cCCc
Confidence 99999996 87666555544 5665
No 93
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=88.40 E-value=2 Score=39.38 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=42.3
Q ss_pred CHhhHHHHHhcC--CcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 001898 276 TEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (998)
Q Consensus 276 T~eDl~~L~elG--IKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVH 353 (998)
+++++..+.+.+ --.+||.|+.+ + |. .....| -+++|.. .+......+....+.||+++
T Consensus 2 s~~~l~~~~~~~~~~~~liDvR~~~--e--~~-----~ghipg--a~~ip~~--------~l~~~~~~~~~~~~~~iv~~ 62 (95)
T cd01534 2 GAAELARWAAEGDRTVYRFDVRTPE--E--YE-----AGHLPG--FRHTPGG--------QLVQETDHFAPVRGARIVLA 62 (95)
T ss_pred CHHHHHHHHHcCCCCeEEEECCCHH--H--HH-----hCCCCC--cEeCCHH--------HHHHHHHHhcccCCCeEEEE
Confidence 566777666554 34689999864 0 11 011122 2455542 12111112212235699999
Q ss_pred CcCCCChHHHHHHHHHHHcCCC
Q 001898 354 SKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 354 CtAGKDRTG~vvaLll~llGVs 375 (998)
|..|. |+..++..+ ..+|.+
T Consensus 63 c~~G~-rs~~aa~~L-~~~G~~ 82 (95)
T cd01534 63 DDDGV-RADMTASWL-AQMGWE 82 (95)
T ss_pred CCCCC-hHHHHHHHH-HHcCCE
Confidence 99998 876554444 556764
No 94
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=87.75 E-value=0.35 Score=56.65 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhc-----CCCCcEEEeCcCCCChHHHH
Q 001898 333 EQVEKFASLVSN-----SSKKPLYLHSKEGVWRTYAM 364 (998)
Q Consensus 333 e~v~~flelL~d-----~~~~PVLVHCtAGKDRTG~v 364 (998)
-.+..|++-+.. ...+||.|||.||.+|||++
T Consensus 432 g~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTf 468 (600)
T KOG0790|consen 432 GGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTF 468 (600)
T ss_pred cHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceE
Confidence 356666665532 23579999999999999998
No 95
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=86.83 E-value=1.2 Score=40.80 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=44.3
Q ss_pred CCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 001898 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (998)
Q Consensus 275 pT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHC 354 (998)
++++++..+.+.+ -.|||+|+.+ + +. . -...| .+++|.... ......+ ..+.||+++|
T Consensus 4 i~~~el~~~~~~~-~~liDvR~~~--e--~~----~-~hi~g--a~~ip~~~~--------~~~~~~~--~~~~~iv~~c 61 (99)
T cd01527 4 ISPNDACELLAQG-AVLVDIREPD--E--YL----R-ERIPG--ARLVPLSQL--------ESEGLPL--VGANAIIFHC 61 (99)
T ss_pred cCHHHHHHHHHCC-CEEEECCCHH--H--HH----h-CcCCC--CEECChhHh--------cccccCC--CCCCcEEEEe
Confidence 5778887766667 6899999964 1 11 0 01122 245554421 1111112 4567999999
Q ss_pred cCCCChHHHHHHHHHHHcCCC
Q 001898 355 KEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 355 tAGKDRTG~vvaLll~llGVs 375 (998)
..|. |+..++..++. +|..
T Consensus 62 ~~g~-~s~~~~~~L~~-~g~~ 80 (99)
T cd01527 62 RSGM-RTQQNAERLAA-ISAG 80 (99)
T ss_pred CCCc-hHHHHHHHHHH-cCCc
Confidence 9998 87766555543 3544
No 96
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=86.21 E-value=1.8 Score=40.83 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=47.7
Q ss_pred CHhhHHHHHhcCCcEEEEcCCCCcCCCchhHh---hHHhhhcCCcEEEEEecCCC-----CCCCHHHHHHHHHHHhcCCC
Q 001898 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAA---IDDAILSGKVELIKIPVEVR-----TAPTMEQVEKFASLVSNSSK 347 (998)
Q Consensus 276 T~eDl~~L~elGIKTVIDLRsee~ee~~~~a~---e~~~~e~~GI~yIhIPV~d~-----~~ps~e~v~~flelL~d~~~ 347 (998)
+++++..+.+.+=-.|||.|+.. +....... +...-...| -+++|+... ..+..+.+.+++.-+.-..+
T Consensus 2 s~~~l~~~l~~~~~~iiDvR~~~-e~~~~~~~~~~~~~~ghIpg--A~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd01449 2 TAEEVLANLDSGDVQLVDARSPE-RFRGEVPEPRPGLRSGHIPG--AVNIPWTSLLDEDGTFKSPEELRALFAALGITPD 78 (118)
T ss_pred CHHHHHHhcCCCCcEEEeCCCHH-HcCCcCCCCCCCCcCCcCCC--CcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence 45666655544324799999974 11100000 000001122 244554311 11334555555443322356
Q ss_pred CcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 348 KPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 348 ~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
.||+++|..|. |+..++..+ ..+|.+
T Consensus 79 ~~iv~yc~~g~-~s~~~~~~l-~~~G~~ 104 (118)
T cd01449 79 KPVIVYCGSGV-TACVLLLAL-ELLGYK 104 (118)
T ss_pred CCEEEECCcHH-HHHHHHHHH-HHcCCC
Confidence 79999999987 877765544 446765
No 97
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=85.60 E-value=2.8 Score=42.39 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=50.8
Q ss_pred CHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCC-cEEEEEecCCCCCCCHHHHHHHHHHHh---cCCCCcEE
Q 001898 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGK-VELIKIPVEVRTAPTMEQVEKFASLVS---NSSKKPLY 351 (998)
Q Consensus 276 T~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~G-I~yIhIPV~d~~~ps~e~v~~flelL~---d~~~~PVL 351 (998)
+-++...|.+.|=+..||.|.++ | ++..+ -.-|+||+......-...=.+|.+.+. -..+..++
T Consensus 26 ~~~qvk~L~~~~~~~llDVRepe-E-----------fk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiI 93 (136)
T KOG1530|consen 26 SVEQVKNLLQHPDVVLLDVREPE-E-----------FKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEII 93 (136)
T ss_pred EHHHHHHHhcCCCEEEEeecCHH-H-----------hhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEE
Confidence 56777888888889999999986 1 11112 456888874222111111123433332 23456899
Q ss_pred EeCcCCCChHHHHHHHHHH
Q 001898 352 LHSKEGVWRTYAMVSRWRQ 370 (998)
Q Consensus 352 VHCtAGKDRTG~vvaLll~ 370 (998)
|||.+|+ |...+.-.+..
T Consensus 94 f~C~SG~-Rs~~A~~~l~s 111 (136)
T KOG1530|consen 94 FGCASGV-RSLKATKILVS 111 (136)
T ss_pred EEeccCc-chhHHHHHHHH
Confidence 9999999 99888655544
No 98
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=85.52 E-value=3.3 Score=37.94 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=47.3
Q ss_pred CHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCC----CCCCCHHHHHHHHHHHhc--CCCCc
Q 001898 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV----RTAPTMEQVEKFASLVSN--SSKKP 349 (998)
Q Consensus 276 T~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d----~~~ps~e~v~~flelL~d--~~~~P 349 (998)
|++++..+.+.+=-.|||.|+.. .|. .-...|- +|+|... ......+.+..+...... ..+.+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~----~~~-----~~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPE----EYE-----RGHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKD 69 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHH----HHH-----HSBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSE
T ss_pred CHHHHHhhhhCCCeEEEEeCCHH----HHH-----cCCCCCC--cccccccccccccccccccccccccccccccccccc
Confidence 46677766655778999999864 111 1122333 7888742 222334444444333322 45668
Q ss_pred EEEeCcCCCChHHHHHHH
Q 001898 350 LYLHSKEGVWRTYAMVSR 367 (998)
Q Consensus 350 VLVHCtAGKDRTG~vvaL 367 (998)
|+|+|..|. |++.+++.
T Consensus 70 iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 70 IVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp EEEEESSSC-HHHHHHHH
T ss_pred ceeeeeccc-ccchhHHH
Confidence 999998888 88887655
No 99
>PRK05320 rhodanese superfamily protein; Provisional
Probab=85.42 E-value=2 Score=47.52 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=48.6
Q ss_pred CCCCHhhHHHHHhcCC------cEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCC
Q 001898 273 GQVTEEGLKWLMEKGY------KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSS 346 (998)
Q Consensus 273 gqpT~eDl~~L~elGI------KTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~ 346 (998)
..++++++..+.+.+- -.|||.|+..+ + +.-...| .+++|+..... ..+.+.. ......
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E----~-----~~Ghi~G--AiniPl~~f~~-~~~~l~~---~~~~~k 174 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFE----V-----DVGTFDG--ALDYRIDKFTE-FPEALAA---HRADLA 174 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHH----H-----ccCccCC--CEeCChhHhhh-hHHHHHh---hhhhcC
Confidence 4578888877665542 36899999751 0 0001112 35666642110 0111111 111124
Q ss_pred CCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 347 KKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 347 ~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
++||+++|+.|. |+-.++.+++. .|.+
T Consensus 175 dk~IvvyC~~G~-Rs~~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 175 GKTVVSFCTGGI-RCEKAAIHMQE-VGID 201 (257)
T ss_pred CCeEEEECCCCH-HHHHHHHHHHH-cCCc
Confidence 679999999998 99888777654 4654
No 100
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=85.35 E-value=3.2 Score=37.67 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=42.6
Q ss_pred CHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 001898 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (998)
Q Consensus 276 T~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHCt 355 (998)
++++++.+.+.++ .|||+|+.++ |. .-...| .+++|.. .+...+..+ ..+.|++++|.
T Consensus 2 ~~~e~~~~~~~~~-~iiD~R~~~~----~~-----~~hipg--A~~ip~~--------~~~~~~~~~--~~~~~vvl~c~ 59 (90)
T cd01524 2 QWHELDNYRADGV-TLIDVRTPQE----FE-----KGHIKG--AINIPLD--------ELRDRLNEL--PKDKEIIVYCA 59 (90)
T ss_pred CHHHHHHHhcCCC-EEEECCCHHH----Hh-----cCCCCC--CEeCCHH--------HHHHHHHhc--CCCCcEEEEcC
Confidence 5677777776665 5999998641 11 001112 2444432 344433334 34679999999
Q ss_pred CCCChHHHHHHHHHHHcCC
Q 001898 356 EGVWRTYAMVSRWRQYMAR 374 (998)
Q Consensus 356 AGKDRTG~vvaLll~llGV 374 (998)
.|. |+..++..+ ..+|.
T Consensus 60 ~g~-~a~~~a~~L-~~~G~ 76 (90)
T cd01524 60 VGL-RGYIAARIL-TQNGF 76 (90)
T ss_pred CCh-hHHHHHHHH-HHCCC
Confidence 987 665554444 44565
No 101
>PRK14071 6-phosphofructokinase; Provisional
Probab=84.13 E-value=1.4 Score=50.98 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=40.4
Q ss_pred CccEEEEEcCCchHHHHHHhccCCCCcEEEEeC----------CCCcccCCCCcccHHHHHHHHHc
Q 001898 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVIY 810 (998)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINl----------G~LGFLt~~~~eel~~~L~~il~ 810 (998)
++|.+|++|||||+-.+.++.....+||+||-. -++||-|..+. ..++++.+..
T Consensus 107 ~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~--~~~~id~i~~ 170 (360)
T PRK14071 107 GLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNI--ATEALDRLHF 170 (360)
T ss_pred CCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHH--HHHHHHHHHh
Confidence 789999999999997666555434899999943 37899987554 5566766643
No 102
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=84.13 E-value=6.4 Score=37.87 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=46.1
Q ss_pred CHhhHHHHHhcC-CcEEEEcCCCCcCCCchhHhhHH-hhhcCCcEEEEEecCCCC--CCCHHHHHHHHHHHhcCCCCcEE
Q 001898 276 TEEGLKWLMEKG-YKTIVDIRAERVKDNFYEAAIDD-AILSGKVELIKIPVEVRT--APTMEQVEKFASLVSNSSKKPLY 351 (998)
Q Consensus 276 T~eDl~~L~elG-IKTVIDLRsee~ee~~~~a~e~~-~~e~~GI~yIhIPV~d~~--~ps~e~v~~flelL~d~~~~PVL 351 (998)
+++++..+.+.+ =-+|||.|+..+ + + .-...| -+++|..... .++......+...+ ..+.|++
T Consensus 2 s~~el~~~l~~~~~~~vIDvR~~~e----~-----~~~ghIpg--A~~ip~~~~~~~~~~~~~~~~l~~~~--~~~~~iv 68 (117)
T cd01522 2 TPAEAWALLQADPQAVLVDVRTEAE----W-----KFVGGVPD--AVHVAWQVYPDMEINPNFLAELEEKV--GKDRPVL 68 (117)
T ss_pred CHHHHHHHHHhCCCeEEEECCCHHH----H-----hcccCCCC--ceecchhhccccccCHHHHHHHHhhC--CCCCeEE
Confidence 566666665553 356999998651 1 0 011122 2556654211 11222223333333 3567999
Q ss_pred EeCcCCCChHHHHHHHHHHHcCCC
Q 001898 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 352 VHCtAGKDRTG~vvaLll~llGVs 375 (998)
++|..|. |+..++..++. +|.+
T Consensus 69 v~C~~G~-rs~~aa~~L~~-~G~~ 90 (117)
T cd01522 69 LLCRSGN-RSIAAAEAAAQ-AGFT 90 (117)
T ss_pred EEcCCCc-cHHHHHHHHHH-CCCC
Confidence 9999997 88877655543 5654
No 103
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=83.92 E-value=1.1 Score=50.60 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=40.9
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINl-------G---~LGFLt~~~~eel~~~L~~il 809 (998)
.+.|.+|++|||||+-.|.++....++||+||.. | ++||-|.+ +.+-++++++.
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~--~~~~~~i~~i~ 153 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTAL--NTIIDAVDKIR 153 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHH--HHHHHHHHHHH
Confidence 3689999999999998888776556899999964 3 78998864 33445566553
No 104
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=83.91 E-value=2.4 Score=40.85 Aligned_cols=87 Identities=17% Similarity=0.327 Sum_probs=45.8
Q ss_pred CCCCHhhHHHHHhcCC-cEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHH--HHHHHhcCCCCc
Q 001898 273 GQVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEK--FASLVSNSSKKP 349 (998)
Q Consensus 273 gqpT~eDl~~L~elGI-KTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~--flelL~d~~~~P 349 (998)
..++++++..+.+.+- -.|||+|+.+ + +. .....| -+++|+...... ...+.. +.... ...++|
T Consensus 8 ~~is~~el~~~~~~~~~~~ivDvR~~~-e---~~-----~~hIpg--ai~ip~~~~~~~-~~~~~~~~~~~~~-~~~~~~ 74 (122)
T cd01526 8 ERVSVKDYKNILQAGKKHVLLDVRPKV-H---FE-----ICRLPE--AINIPLSELLSK-AAELKSLQELPLD-NDKDSP 74 (122)
T ss_pred cccCHHHHHHHHhCCCCeEEEEcCCHH-H---hh-----cccCCC--CeEccHHHHhhh-hhhhhhhhhcccc-cCCCCc
Confidence 3567888887776633 3589999975 1 10 011122 345665321100 000100 01111 145789
Q ss_pred EEEeCcCCCChHHHHHHHHHHHcCC
Q 001898 350 LYLHSKEGVWRTYAMVSRWRQYMAR 374 (998)
Q Consensus 350 VLVHCtAGKDRTG~vvaLll~llGV 374 (998)
++++|.+|. |+..++..++ .+|.
T Consensus 75 ivv~C~~G~-rs~~aa~~L~-~~G~ 97 (122)
T cd01526 75 IYVVCRRGN-DSQTAVRKLK-ELGL 97 (122)
T ss_pred EEEECCCCC-cHHHHHHHHH-HcCC
Confidence 999999997 8776655443 3576
No 105
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=83.49 E-value=1.2 Score=51.27 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=40.8
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC----------CCCcccCCCCcccHHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVI 809 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINl----------G~LGFLt~~~~eel~~~L~~il 809 (998)
.+.|.+|++|||||+-.|..+.....+|++||-- =++||.|..+ -.-+++.++-
T Consensus 93 ~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~--~~~eaid~l~ 156 (347)
T COG0205 93 LGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALE--TAVEAIDNLR 156 (347)
T ss_pred cCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHH--HHHHHHHHHH
Confidence 4689999999999999988887665699999943 2789998744 3445555543
No 106
>PRK01415 hypothetical protein; Validated
Probab=83.25 E-value=2.8 Score=46.29 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=50.3
Q ss_pred EcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHH----HhcCC
Q 001898 271 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASL----VSNSS 346 (998)
Q Consensus 271 RSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flel----L~d~~ 346 (998)
++..++++++..+.+..=-+|||.|.+.+-+.. .-.| -+++|+. .+.+|-+. .....
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~G---------hi~g--Ainip~~--------~f~e~~~~~~~~~~~~k 170 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVG---------TFKS--AINPNTK--------TFKQFPAWVQQNQELLK 170 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcC---------CcCC--CCCCChH--------HHhhhHHHHhhhhhhcC
Confidence 456789999988877655679999997410000 0011 1334433 22222111 11235
Q ss_pred CCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 347 KKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 347 ~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
++||+++|++|. |+-.++.+++. +|..
T Consensus 171 ~k~Iv~yCtgGi-Rs~kAa~~L~~-~Gf~ 197 (247)
T PRK01415 171 GKKIAMVCTGGI-RCEKSTSLLKS-IGYD 197 (247)
T ss_pred CCeEEEECCCCh-HHHHHHHHHHH-cCCC
Confidence 779999999998 98888777654 4654
No 107
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=83.03 E-value=4.3 Score=38.09 Aligned_cols=78 Identities=12% Similarity=0.122 Sum_probs=43.7
Q ss_pred CCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 001898 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (998)
Q Consensus 275 pT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHC 354 (998)
++++++..+.+.+=-.|||+|+..+ +. .....| -+++|. ..+..++..+ ..+.|++|+|
T Consensus 7 is~~el~~~l~~~~~~ivDvR~~~e----~~-----~ghi~g--A~~ip~--------~~l~~~~~~~--~~~~~ivv~c 65 (108)
T PRK00162 7 INVEQAHQKLQEGGAVLVDIRDPQS----FA-----MGHAPG--AFHLTN--------DSLGAFMRQA--DFDTPVMVMC 65 (108)
T ss_pred cCHHHHHHHHHcCCCEEEEcCCHHH----Hh-----cCCCCC--CeECCH--------HHHHHHHHhc--CCCCCEEEEe
Confidence 4677777655443257999998640 10 001112 133332 3455555444 3567999999
Q ss_pred cCCCChHHHHHHHHHHHcCCC
Q 001898 355 KEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 355 tAGKDRTG~vvaLll~llGVs 375 (998)
..|. |+..++.. +...|.+
T Consensus 66 ~~g~-~s~~a~~~-L~~~G~~ 84 (108)
T PRK00162 66 YHGN-SSQGAAQY-LLQQGFD 84 (108)
T ss_pred CCCC-CHHHHHHH-HHHCCch
Confidence 9998 76555433 3345664
No 108
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=82.70 E-value=5.6 Score=38.75 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=19.8
Q ss_pred CCCCcEEEeCc-CCCChHHHHHHHHHH
Q 001898 345 SSKKPLYLHSK-EGVWRTYAMVSRWRQ 370 (998)
Q Consensus 345 ~~~~PVLVHCt-AGKDRTG~vvaLll~ 370 (998)
..+.+|+|||. +|. |+..++..+..
T Consensus 66 ~~~~~vv~yC~~sg~-rs~~aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSSK-RGPRMARHLRN 91 (121)
T ss_pred CCCCEEEEECCCccc-cHHHHHHHHHH
Confidence 35779999997 887 98888776665
No 109
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=82.24 E-value=5.6 Score=38.80 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=19.9
Q ss_pred CCCCcEEEeCc-CCCChHHHHHHHHHHHcCC
Q 001898 345 SSKKPLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (998)
Q Consensus 345 ~~~~PVLVHCt-AGKDRTG~vvaLll~llGV 374 (998)
..+.||+++|. +|. |+..++.++ ..+|.
T Consensus 84 ~~~~~vvvyC~~~G~-rs~~a~~~L-~~~G~ 112 (128)
T cd01520 84 ERDPKLLIYCARGGM-RSQSLAWLL-ESLGI 112 (128)
T ss_pred CCCCeEEEEeCCCCc-cHHHHHHHH-HHcCC
Confidence 45679999997 466 888777444 44676
No 110
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=81.16 E-value=2.4 Score=48.41 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=39.0
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINl-------G---~LGFLt~~~~eel~~~L~~il 809 (998)
.+.|.+|++|||||+-.|.++.. .++||+||-. | ++||-|.++ .+.+.++.+.
T Consensus 91 ~~Id~Li~IGGdgs~~~a~~L~e-~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~--~~~~~i~~i~ 153 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAMRLTE-HGFPCVGLPGTIDNDIPGTDYTIGFDTALN--TVVEAIDRIR 153 (317)
T ss_pred cCCCEEEEECCchHHHHHHHHHH-cCCCEEEecccccCCCCCCccCCCHHHHHH--HHHHHHHHHH
Confidence 47899999999999988776554 4799999953 3 789988743 3444555553
No 111
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=80.54 E-value=1.5 Score=56.49 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhc---CCCCcEEEeCcCCCChHHHH
Q 001898 333 EQVEKFASLVSN---SSKKPLYLHSKEGVWRTYAM 364 (998)
Q Consensus 333 e~v~~flelL~d---~~~~PVLVHCtAGKDRTG~v 364 (998)
..+.+|++-+.. ...+|++|||.||.+|||+.
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~f 747 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCF 747 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceE
Confidence 455666665542 24589999999999999997
No 112
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=80.46 E-value=2 Score=51.35 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=39.3
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC----------CCCcccCCCCcccHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 808 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGINl----------G~LGFLt~~~~eel~~~L~~i 808 (998)
.++|.+|++|||||+-.|.++.. +..+||+||-. =++||-|.++ ...++++.+
T Consensus 175 ~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~--~~~~aI~~~ 242 (459)
T PTZ00286 175 HGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVE--EAQNAIRAA 242 (459)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHH--HHHHHHHHH
Confidence 47999999999999988877654 35689999953 3789988743 444555554
No 113
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=80.39 E-value=3.6 Score=47.84 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=47.7
Q ss_pred CCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcC-CcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 001898 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSG-KVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (998)
Q Consensus 274 qpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~-GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLV 352 (998)
..+++++..+.+.+=-.|||.|++++ |. ..... +...+|+|+...... . .+.+.+....+.||+|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E----~~-----~ghI~~~~gAinIPl~~l~~~-~----~~~~~l~~~~~~~Ivv 337 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHE----VL-----LKDLPEGGASLKLPLSAITDD-A----DILHALSPIDGDNVVV 337 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHH----hh-----hccCCCCCccEeCcHHHhhcc-h----hhhhhccccCCCcEEE
Confidence 45777777666554337999999751 10 00111 134678887522110 0 1122222112339999
Q ss_pred eCcCCCChHHHHHHHHHHHcCC
Q 001898 353 HSKEGVWRTYAMVSRWRQYMAR 374 (998)
Q Consensus 353 HCtAGKDRTG~vvaLll~llGV 374 (998)
||.+|. |+..++..++. +|.
T Consensus 338 ~C~sG~-RS~~Aa~~L~~-~G~ 357 (370)
T PRK05600 338 YCASGI-RSADFIEKYSH-LGH 357 (370)
T ss_pred ECCCCh-hHHHHHHHHHH-cCC
Confidence 999999 98887666554 565
No 114
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=80.36 E-value=3.6 Score=39.49 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=37.3
Q ss_pred CcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHH
Q 001898 288 YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSR 367 (998)
Q Consensus 288 IKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHCtAGKDRTG~vvaL 367 (998)
=++|||.|++++ |. .-...| -+|+|+. ++...++.+....+.|++++|..|. |+..++..
T Consensus 20 ~~~lIDvR~~~e----f~-----~ghIpG--AiniP~~--------~l~~~l~~l~~~~~~~IVlyC~~G~-rS~~aa~~ 79 (104)
T PRK10287 20 AEHWIDVRVPEQ----YQ-----QEHVQG--AINIPLK--------EVKERIATAVPDKNDTVKLYCNAGR-QSGQAKEI 79 (104)
T ss_pred CCEEEECCCHHH----Hh-----cCCCCc--cEECCHH--------HHHHHHHhcCCCCCCeEEEEeCCCh-HHHHHHHH
Confidence 368999999751 11 001112 2445543 3444343332234568999999996 87777655
Q ss_pred HHHHcCCC
Q 001898 368 WRQYMARC 375 (998)
Q Consensus 368 ll~llGVs 375 (998)
+. .+|.+
T Consensus 80 L~-~~G~~ 86 (104)
T PRK10287 80 LS-EMGYT 86 (104)
T ss_pred HH-HcCCC
Confidence 54 35653
No 115
>PRK14072 6-phosphofructokinase; Provisional
Probab=80.23 E-value=1.9 Score=50.92 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=38.4
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC----------CCCcccCCCCcccHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 808 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGINl----------G~LGFLt~~~~eel~~~L~~i 808 (998)
.++|.+|++|||||+-.|.++.. +..+||+||-- -+.||-|..+ .+.+++.++
T Consensus 102 ~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~--~i~~ai~~l 169 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAK--YIATSVLEA 169 (416)
T ss_pred cCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHH--HHHHHHHHH
Confidence 36899999999999988877543 34599999953 3678887643 344555555
No 116
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=80.07 E-value=4.7 Score=45.88 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=48.9
Q ss_pred EcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHH----HHhcCC
Q 001898 271 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFAS----LVSNSS 346 (998)
Q Consensus 271 RSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~fle----lL~d~~ 346 (998)
++..++++++..+.+.+=-+|||.|...+ + ..-...| -+++|+.. +.++.. .+....
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E----~-----~~GhI~G--Ai~ip~~~--------~~~~~~~l~~~~~~~k 170 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYE----Y-----EIGHFEN--AIEPDIET--------FREFPPWVEENLDPLK 170 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHH----H-----hcCcCCC--CEeCCHHH--------hhhhHHHHHHhcCCCC
Confidence 34467888887765543357999998641 1 0001122 24555542 222222 222235
Q ss_pred CCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 347 KKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 347 ~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
++||++||++|. |...++.+++. +|..
T Consensus 171 dk~IvvyC~~G~-Rs~~aa~~L~~-~Gf~ 197 (314)
T PRK00142 171 DKKVVMYCTGGI-RCEKASAWMKH-EGFK 197 (314)
T ss_pred cCeEEEECCCCc-HHHHHHHHHHH-cCCC
Confidence 679999999999 99887666654 5654
No 117
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=79.37 E-value=5.2 Score=38.09 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=39.0
Q ss_pred cCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHH
Q 001898 286 KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMV 365 (998)
Q Consensus 286 lGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHCtAGKDRTG~vv 365 (998)
.--+.+||.|+.++ +. .....| -+++|.. .+...+..+....+.|++++|..|. |+..++
T Consensus 16 ~~~~~lIDvR~~~e----f~-----~ghIpg--Ainip~~--------~l~~~l~~~~~~~~~~vvlyC~~G~-rS~~aa 75 (101)
T TIGR02981 16 FAAEHWIDVRIPEQ----YQ-----QEHIQG--AINIPLK--------EIKEHIATAVPDKNDTVKLYCNAGR-QSGMAK 75 (101)
T ss_pred ccCCEEEECCCHHH----Hh-----cCCCCC--CEECCHH--------HHHHHHHHhCCCCCCeEEEEeCCCH-HHHHHH
Confidence 35578999998640 10 011112 2445442 3333333322234668999999998 888886
Q ss_pred HHHHHHcCCC
Q 001898 366 SRWRQYMARC 375 (998)
Q Consensus 366 aLll~llGVs 375 (998)
..+.. +|.+
T Consensus 76 ~~L~~-~G~~ 84 (101)
T TIGR02981 76 DILLD-MGYT 84 (101)
T ss_pred HHHHH-cCCC
Confidence 65543 5653
No 118
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.08 E-value=2.6 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHH
Q 001898 345 SSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (998)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG~vvaLll~ 370 (998)
....||||||.-|.|||.-++++..+
T Consensus 372 ~~~~sVlVHCSDGWDRT~QlvsLA~L 397 (717)
T KOG4471|consen 372 SESRSVLVHCSDGWDRTAQLVSLAML 397 (717)
T ss_pred cCCceEEEEcCCCccchHHHHHHHHH
Confidence 56779999999999999999766655
No 119
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=78.75 E-value=2.8 Score=48.47 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=24.2
Q ss_pred HHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHH
Q 001898 338 FASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (998)
Q Consensus 338 flelL~d~~~~PVLVHCtAGKDRTG~vvaLll~ 370 (998)
+++.+. ..+.+|||||..|.|||..+++|...
T Consensus 223 i~~~l~-~~~~~Vlvh~~dGwDrt~q~~sL~ql 254 (353)
T PF06602_consen 223 IADLLH-DEGSSVLVHCSDGWDRTSQLSSLAQL 254 (353)
T ss_dssp HHHHHH-TT--EEEEECTTSSSHHHHHHHHHHH
T ss_pred HHHHhh-ccCceEEEEcCCCCcccHHHHHHHHH
Confidence 344552 46679999999999999999888876
No 120
>PLN02884 6-phosphofructokinase
Probab=78.67 E-value=1.9 Score=50.86 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=69.2
Q ss_pred hcccccCCCEEEEEecCCh-hHH-HHHHHHHHHHhcCCCe-EEEEcCC-hhhHhhc--------------CCCCc--cce
Q 001898 683 MLMWKTTPRTVLVLKKPGP-ALM-EEAKEVASFLYHQEKM-NILVEPD-VHDIFAR--------------IPGFG--FVQ 742 (998)
Q Consensus 683 ~l~w~~~pk~VlIv~K~~~-~~~-~~a~~l~~~L~~~~gi-~V~ve~~-~~~~~~~--------------~~~~~--~~~ 742 (998)
.+-|+....+|+|++-=++ +-+ ...+.++..+.. .|+ +|+--.+ ..-.+.. +...+ ...
T Consensus 46 ~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~-~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LG 124 (411)
T PLN02884 46 KIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI-YGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLG 124 (411)
T ss_pred eEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH-cCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceec
Confidence 4666777789999988775 333 344566666543 366 5763221 1111100 00000 000
Q ss_pred ee-eccCcccc-----cCCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC-------C---CCcccCCCCcccH
Q 001898 743 TF-YLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSHPFEDY 801 (998)
Q Consensus 743 ~~-~~~~~~dl-----~~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGINl-------G---~LGFLt~~~~eel 801 (998)
+- +.....++ ..++|.+|++|||||+-.|.++.. +..+||+||-- | ++||-|.++ .+
T Consensus 125 tsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~--~~ 202 (411)
T PLN02884 125 VSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVE--EA 202 (411)
T ss_pred cCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHH--HH
Confidence 00 00001111 247999999999999988877543 24599999943 2 789988743 45
Q ss_pred HHHHHHHH
Q 001898 802 RQDLRQVI 809 (998)
Q Consensus 802 ~~~L~~il 809 (998)
.++++++.
T Consensus 203 ~~ai~~l~ 210 (411)
T PLN02884 203 QRAINSAY 210 (411)
T ss_pred HHHHHHHH
Confidence 56666553
No 121
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=77.55 E-value=2.5 Score=50.30 Aligned_cols=53 Identities=26% Similarity=0.396 Sum_probs=38.6
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC----------CCCcccCCCCcccHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 808 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGINl----------G~LGFLt~~~~eel~~~L~~i 808 (998)
.++|.+|++|||||+-.|.++.. +..+||+||-. =++||-|.++ ...++++.+
T Consensus 171 ~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~--~a~~aI~~~ 238 (443)
T PRK06830 171 MNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVE--KATEAIRCA 238 (443)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHH--HHHHHHHHH
Confidence 47999999999999988876553 35689999953 2788888743 344555544
No 122
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=77.50 E-value=2.1 Score=50.30 Aligned_cols=54 Identities=28% Similarity=0.330 Sum_probs=39.9
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGINl-------G---~LGFLt~~~~eel~~~L~~il 809 (998)
.++|.+|++|||||+-.|.++.. ..++||+||-- | ++||-|.++ .+.++++++.
T Consensus 111 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~--~~~~ai~~l~ 179 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAE--QGARFFDNVI 179 (403)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHH--HHHHHHHHHH
Confidence 37899999999999998877653 34799999953 2 688888743 3445666654
No 123
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=76.90 E-value=7.4 Score=45.71 Aligned_cols=85 Identities=21% Similarity=0.211 Sum_probs=45.5
Q ss_pred CccEEEEEcCCchHHHHHH-hccC--CCCcEEEEeCCCC-----cccCC-C-C---cccHHHHHHHHHccCCCCCceeee
Q 001898 755 RVDFVACLGGDGVILHASN-LFRG--AVPPVISFNLGSL-----GFLTS-H-P---FEDYRQDLRQVIYGNNTLDGVYIT 821 (998)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar-~~~~--~~~PVLGINlG~L-----GFLt~-~-~---~eel~~~L~~il~G~~~i~~~~i~ 821 (998)
..|+|+|.|||||+=-++- .|.+ ...||-=+-.|.. --|.. | + ...+-+++..+++++..
T Consensus 116 ~~Dii~VaGGDGT~~eVVTGi~Rrr~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~k------- 188 (535)
T KOG4435|consen 116 QEDIIYVAGGDGTIGEVVTGIFRRRKAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKK------- 188 (535)
T ss_pred CCCeEEEecCCCcHHHhhHHHHhcccccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhccccc-------
Confidence 3499999999999977664 2322 3445532223321 11211 1 1 22344566677777632
Q ss_pred eeeEEEEEEEeCCeecCCcccceeeeEEE
Q 001898 822 LRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850 (998)
Q Consensus 822 ~R~rL~~~V~r~G~~v~~~~~~ALNDVvI 850 (998)
..+.-.|...|... ...++||++.-
T Consensus 189 --sv~~fdv~~~gs~l--~P~fgl~glsw 213 (535)
T KOG4435|consen 189 --SVYAFDVTTEGSTL--APEFGLGGLSW 213 (535)
T ss_pred --ceEEEEeccCCCcc--ccccccCccch
Confidence 23333444455543 34678888754
No 124
>PLN02564 6-phosphofructokinase
Probab=76.54 E-value=2.7 Score=50.47 Aligned_cols=54 Identities=26% Similarity=0.371 Sum_probs=38.4
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC----------CCCcccCCCCcccHHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVI 809 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGINl----------G~LGFLt~~~~eel~~~L~~il 809 (998)
.++|.+|++|||||+-.|.++.. +..++|+||-- =++||-|.+ +.+.++++++.
T Consensus 175 ~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv--~~~~~aI~~i~ 243 (484)
T PLN02564 175 RGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAH 243 (484)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHH--HHHHHHHHHHH
Confidence 37999999999999988877654 33455999954 268888873 34455665553
No 125
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=76.26 E-value=3.2 Score=47.49 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=39.9
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHHc
Q 001898 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIY 810 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINl-------G---~LGFLt~~~~eel~~~L~~il~ 810 (998)
.+.|.+|++|||||+-.|.++.. ..+||+||.. | ++||-|..+. +.+.++.+..
T Consensus 93 ~~Id~LivIGGdgS~~~a~~L~~-~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~--~~~~i~~i~~ 156 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARRLAD-KGLPVVGVPKTIDNDLEATDYTFGFDTAVEI--ATEALDRLHT 156 (324)
T ss_pred cCCCEEEEECCchHHHHHHHHHh-cCCCEEeeccccCCCCcCCccCcCHHHHHHH--HHHHHHHHHH
Confidence 46899999999999977666544 5699999954 3 6899887554 5556666543
No 126
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=74.82 E-value=5.3 Score=46.09 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=51.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl-~~~~DlVIvLGGDGTl 768 (998)
.++++||.-..-.......++.+.|.+ .++++.+-..+.. .+....+.. -.... ..++|+||.+|| |+.
T Consensus 23 ~~r~livt~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~~----~p~~~~v~~----~~~~~~~~~~D~IIaiGG-GS~ 92 (375)
T cd08194 23 GKRPLIVTDKVMVKLGLVDKLTDSLKK-EGIESAIFDDVVS----EPTDESVEE----GVKLAKEGGCDVIIALGG-GSP 92 (375)
T ss_pred CCeEEEEcCcchhhcchHHHHHHHHHH-CCCeEEEECCCCC----CcCHHHHHH----HHHHHHhcCCCEEEEeCC-chH
Confidence 478999986543323356778888854 4666554322110 111000000 00011 247899999999 999
Q ss_pred HHHHHhcc-------------------CCCCcEEEEeC
Q 001898 769 LHASNLFR-------------------GAVPPVISFNL 787 (998)
Q Consensus 769 L~Aar~~~-------------------~~~~PVLGINl 787 (998)
+-+++.+. ...+|++.|.+
T Consensus 93 ~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 93 IDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred HHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 99998653 34579999975
No 127
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=74.66 E-value=8.4 Score=36.38 Aligned_cols=82 Identities=10% Similarity=0.058 Sum_probs=44.3
Q ss_pred cCCCCHhhHHHHHhcC--CcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHH-HHHHHHhcCCCC
Q 001898 272 GGQVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVE-KFASLVSNSSKK 348 (998)
Q Consensus 272 SgqpT~eDl~~L~elG--IKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~-~flelL~d~~~~ 348 (998)
+..++++++..+.+.+ --.|||+|+.+ + |. .-...|. +++|.. .+. .....+ ..+.
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~-e---~~-----~ghIpgA--~~ip~~--------~l~~~~~~~i--~~~~ 65 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAE-A---YA-----RGHVPGA--INLPHR--------EICENATAKL--DKEK 65 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHH-H---Hh-----cCCCCCC--EeCCHH--------HhhhHhhhcC--CCCC
Confidence 3467888888776654 23799999864 1 11 0111222 344432 111 112223 3567
Q ss_pred cEEEeCcCCCC-hHHHHHHHHHHHcCCC
Q 001898 349 PLYLHSKEGVW-RTYAMVSRWRQYMARC 375 (998)
Q Consensus 349 PVLVHCtAGKD-RTG~vvaLll~llGVs 375 (998)
||+++|..|.. |+..++..+ ..+|.+
T Consensus 66 ~vvvyc~~g~~~~s~~~a~~l-~~~G~~ 92 (110)
T cd01521 66 LFVVYCDGPGCNGATKAALKL-AELGFP 92 (110)
T ss_pred eEEEEECCCCCchHHHHHHHH-HHcCCe
Confidence 99999998863 544444444 345763
No 128
>PRK03202 6-phosphofructokinase; Provisional
Probab=72.24 E-value=5.1 Score=45.84 Aligned_cols=52 Identities=27% Similarity=0.412 Sum_probs=39.0
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQV 808 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINl-------G---~LGFLt~~~~eel~~~L~~i 808 (998)
.+.|.+|++|||||+-.|.++. ..++||+||.. | ++||-|..+ .+-+.++++
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~L~-e~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~--~~~~~i~~l 153 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKRLT-EHGIPVIGLPGTIDNDIAGTDYTIGFDTALN--TAVEAIDRL 153 (320)
T ss_pred cCCCEEEEeCChHHHHHHHHHH-hcCCcEEEecccccCCCCCCccCcCHHHHHH--HHHHHHHHH
Confidence 4689999999999998887765 45899999954 3 788888743 344555555
No 129
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=71.63 E-value=12 Score=39.19 Aligned_cols=75 Identities=9% Similarity=0.172 Sum_probs=43.9
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCc---h
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG---V 767 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDG---T 767 (998)
++|+||-..+.... .++++|.+ .|.++.+-+... .+.++ .+.+|.||+.||-| .
T Consensus 2 ~~iliid~~dsf~~----~i~~~l~~-~g~~~~v~~~~~-----------------~~~~~-l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSFTF----NLVDLIRK-LGVPMQVVNVED-----------------LDLDE-VENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCchHH----HHHHHHHH-cCCcEEEEECCc-----------------cChhH-hccCCEEEECCCCCChHH
Confidence 57888877765433 36677754 355554422100 00112 23579999999999 2
Q ss_pred ---HHHHHHhccCCCCcEEEEeCCC
Q 001898 768 ---ILHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 768 ---lL~Aar~~~~~~~PVLGINlG~ 789 (998)
++...+.+ ...+|||||-+|.
T Consensus 59 ~~~~~~~i~~~-~~~~PiLGIClG~ 82 (190)
T PRK06895 59 YPQLFAMLERY-HQHKSILGVCLGH 82 (190)
T ss_pred hhHHHHHHHHh-cCCCCEEEEcHHH
Confidence 22233332 3478999999886
No 130
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=71.53 E-value=5.1 Score=46.10 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=39.7
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHHc
Q 001898 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIY 810 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGINl-------G---~LGFLt~~~~eel~~~L~~il~ 810 (998)
.+.|.+|++|||||+-.|..+.. ..++||+||-. | ++||-|.. +.+.++++++..
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~--~~~~~~i~~l~~ 160 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTAL--KTIVEAIDRIRD 160 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHH--HHHHHHHHHHHH
Confidence 47899999999999988876543 23799999954 2 67887763 334556666543
No 131
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=70.93 E-value=6.3 Score=45.48 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=51.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTl 768 (998)
.++++||.-..-.......++...|.+ .++++.+-..+. ..+....+... ... ...++|+||.+|| |++
T Consensus 26 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-Gs~ 95 (376)
T cd08193 26 AKRVLVVTDPGILKAGLIDPLLASLEA-AGIEVTVFDDVE----ADPPEAVVEAA----VEAARAAGADGVIGFGG-GSS 95 (376)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999986543223356778888854 466655322221 11111000000 001 1247899999999 999
Q ss_pred HHHHHhcc-------------------CCCCcEEEEeC
Q 001898 769 LHASNLFR-------------------GAVPPVISFNL 787 (998)
Q Consensus 769 L~Aar~~~-------------------~~~~PVLGINl 787 (998)
+-+++.+. ...+|++.|.+
T Consensus 96 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 133 (376)
T cd08193 96 MDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPT 133 (376)
T ss_pred HHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCC
Confidence 99998653 13578988875
No 132
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=70.50 E-value=7.7 Score=35.52 Aligned_cols=29 Identities=3% Similarity=-0.079 Sum_probs=20.6
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
..+.+|+++|..|. |+..++..+ ..+|.+
T Consensus 54 ~~~~~ivv~c~~g~-~s~~~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGSL-LARFAAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCChH-HHHHHHHHH-HHcCCC
Confidence 45679999999887 877665544 446764
No 133
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=69.97 E-value=12 Score=34.56 Aligned_cols=27 Identities=7% Similarity=-0.133 Sum_probs=19.9
Q ss_pred CCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 347 KKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 347 ~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
+.+|+++|..|. |+..++..+. .+|.+
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~~L~-~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAAFLV-KCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHHHHH-HcCCC
Confidence 679999999998 8777665443 45664
No 134
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=69.13 E-value=7.4 Score=45.28 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=51.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTl 768 (998)
.++++||.-..-.....+.++.+.|.+ .++.+.+-..+. ..|....+... .+. -..++|+||.+|| |..
T Consensus 31 ~~~~livt~~~~~~~g~~~~v~~~L~~-~~i~~~~f~~v~----~np~~~~v~~~----~~~~~~~~~D~IiaiGG-GS~ 100 (383)
T PRK09860 31 FTRTLIVTDNMLTKLGMAGDVQKALEE-RNIFSVIYDGTQ----PNPTTENVAAG----LKLLKENNCDSVISLGG-GSP 100 (383)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHHcCCCEEEEeCC-chH
Confidence 379999986543334456678888864 466654422221 00110000000 000 1357999999999 999
Q ss_pred HHHHHhcc-------------------CCCCcEEEEeC
Q 001898 769 LHASNLFR-------------------GAVPPVISFNL 787 (998)
Q Consensus 769 L~Aar~~~-------------------~~~~PVLGINl 787 (998)
+-+++.+. ...+|++.|.+
T Consensus 101 iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPT 138 (383)
T PRK09860 101 HDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINT 138 (383)
T ss_pred HHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeC
Confidence 99988653 13468888875
No 135
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=68.71 E-value=7.7 Score=44.83 Aligned_cols=94 Identities=18% Similarity=0.317 Sum_probs=53.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl-~~~~DlVIvLGGDGTlL 769 (998)
++++||....-.......++.+.|.+ .++++.+-..+.. .+....+... .... ..++|+||.+|| |+++
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~i 98 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDE-AGIDYVIYDGVKP----NPTITNVKDG----LAVFKKEGCDFIISIGG-GSPH 98 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCCC----CCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHHH
Confidence 78999986543223456778888854 4666544322210 1110000000 0011 247899999999 9999
Q ss_pred HHHHhcc-------------------CCCCcEEEEeC--CCCcccC
Q 001898 770 HASNLFR-------------------GAVPPVISFNL--GSLGFLT 794 (998)
Q Consensus 770 ~Aar~~~-------------------~~~~PVLGINl--G~LGFLt 794 (998)
-+++.+. ...+|++.|-+ |+=+..+
T Consensus 99 D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t 144 (377)
T cd08176 99 DCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVT 144 (377)
T ss_pred HHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccC
Confidence 9998653 24578888875 5443333
No 136
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=68.00 E-value=5.9 Score=46.39 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=49.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTl 768 (998)
.++++||+-++-.....+.++.+.|.. .++++.+-.++. ..|....+. ...+. -..++|.||.||| |..
T Consensus 29 ~~r~liVTd~~~~~~g~~~~v~~~L~~-~~i~~~if~~v~----p~P~~~~v~----~~~~~~~~~~~D~iIalGG-GS~ 98 (377)
T COG1454 29 AKRALIVTDRGLAKLGLLDKVLDSLDA-AGIEYEVFDEVE----PEPTIETVE----AGAEVAREFGPDTIIALGG-GSV 98 (377)
T ss_pred CCceEEEECCccccchhHHHHHHHHHh-cCCeEEEecCCC----CCCCHHHHH----HHHHHHHhcCCCEEEEeCC-ccH
Confidence 479999999986667788999999965 467766544432 111110000 00001 1357999999999 999
Q ss_pred HHHHHhc
Q 001898 769 LHASNLF 775 (998)
Q Consensus 769 L~Aar~~ 775 (998)
+-+++..
T Consensus 99 ~D~AK~i 105 (377)
T COG1454 99 IDAAKAI 105 (377)
T ss_pred HHHHHHH
Confidence 9998854
No 137
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=67.20 E-value=12 Score=42.90 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=50.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL 769 (998)
.++++||.-..-.. ....++.+.|.+..++++++-+.... .+....+......-.+.-..++|+||.+|| |+++
T Consensus 23 ~~k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~----~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEE----YKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 47889988655322 35677888875313555544332110 011000000000000011246899999999 9999
Q ss_pred HHHHhcc---CCCCcEEEEeC
Q 001898 770 HASNLFR---GAVPPVISFNL 787 (998)
Q Consensus 770 ~Aar~~~---~~~~PVLGINl 787 (998)
-+++..+ ...+|++-|.+
T Consensus 97 D~ak~vA~~~~rgip~i~VPT 117 (344)
T cd08169 97 DVAGFVASTLFRGIAFIRVPT 117 (344)
T ss_pred HHHHHHHHHhccCCcEEEecC
Confidence 8887654 34788888876
No 138
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=66.61 E-value=2.3 Score=47.59 Aligned_cols=54 Identities=28% Similarity=0.374 Sum_probs=37.3
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINl-------G---~LGFLt~~~~eel~~~L~~il 809 (998)
.+.|.+|++|||||+-.|..+.....+||+||-. | ++||-|..+ .+-+.++.+.
T Consensus 91 ~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkTIDNDi~gtd~siGf~TA~~--~~~~~i~~i~ 154 (282)
T PF00365_consen 91 LGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKTIDNDIPGTDYSIGFDTAVN--YIAEAIDNIK 154 (282)
T ss_dssp TTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEETTSSCTTSSS-BTHHHHHH--HHHHHHHHHH
T ss_pred hCCCEEEEecCCCHHHHHHHHHhcCceEEEEEeccccCCcCCCCCCcccCchhH--HHHHHHHHHH
Confidence 4789999999999987776655345689999953 3 678877633 3444555443
No 139
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=66.33 E-value=28 Score=30.66 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=19.8
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcCCCH
Q 001898 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCA 376 (998)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG~vvaLll~llGVs~ 376 (998)
..+.+|+++|..|. |+-.++..+. .+|.+.
T Consensus 54 ~~~~~iv~~c~~g~-~a~~~~~~l~-~~G~~~ 83 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSAKAAWLLR-ELGFKN 83 (100)
T ss_pred CCCCeEEEEeCCCc-HHHHHHHHHH-HcCCCc
Confidence 45679999997777 7755544443 356553
No 140
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=66.06 E-value=20 Score=32.65 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=18.6
Q ss_pred CCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 346 ~~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
.+.||+|+|..|. |+-.++. ++..+|.+
T Consensus 60 ~~~~ivv~c~~g~-~s~~~~~-~l~~~G~~ 87 (103)
T cd01447 60 EDKPFVFYCASGW-RSALAGK-TLQDMGLK 87 (103)
T ss_pred CCCeEEEEcCCCC-cHHHHHH-HHHHcChH
Confidence 4679999999886 7654443 33445654
No 141
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=65.99 E-value=12 Score=40.10 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=45.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH--
Q 001898 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL-- 769 (998)
Q Consensus 692 ~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL-- 769 (998)
+|+++-... .....+.+||.+ .|+.+.+-+.....+ .+..++..++|.||+.||.|..-
T Consensus 2 ~ilv~d~~~----~~~~~~~~~l~~-~G~~~~~~~~~~~~~--------------~~~~~~~~~~dgliisGGp~~~~~~ 62 (214)
T PRK07765 2 RILVVDNYD----SFVFNLVQYLGQ-LGVEAEVWRNDDPRL--------------ADEAAVAAQFDGVLLSPGPGTPERA 62 (214)
T ss_pred eEEEEECCC----cHHHHHHHHHHH-cCCcEEEEECCCcCH--------------HHHHHhhcCCCEEEECCCCCChhhc
Confidence 466665553 223457778764 466655433211000 01122245689999999998753
Q ss_pred ----HHHHhccCCCCcEEEEeCCC
Q 001898 770 ----HASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 770 ----~Aar~~~~~~~PVLGINlG~ 789 (998)
...+.+....+|||||-+|.
T Consensus 63 ~~~~~~i~~~~~~~~PiLGIC~G~ 86 (214)
T PRK07765 63 GASIDMVRACAAAGTPLLGVCLGH 86 (214)
T ss_pred chHHHHHHHHHhCCCCEEEEccCH
Confidence 23344445679999999986
No 142
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=65.32 E-value=13 Score=39.02 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=25.7
Q ss_pred CccEEEEEcCCchHHH------HHHhccCCCCcEEEEeCCC
Q 001898 755 RVDFVACLGGDGVILH------ASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 755 ~~DlVIvLGGDGTlL~------Aar~~~~~~~PVLGINlG~ 789 (998)
.+|.||..||-|..-. ..+.+ ...+|||||-+|.
T Consensus 43 ~~d~iilsgGpg~p~~~~~~~~~i~~~-~~~~PvLGIC~G~ 82 (188)
T TIGR00566 43 LPLLIVISPGPCTPNEAGISLEAIRHF-AGKLPILGVCLGH 82 (188)
T ss_pred CCCEEEEcCCCCChhhcchhHHHHHHh-ccCCCEEEECHHH
Confidence 4789999999998643 33444 3578999998885
No 143
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=64.98 E-value=12 Score=43.15 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=43.9
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH
Q 001898 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (998)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL 769 (998)
++++||.-... .......++.+.|.+ .++++.+-..+. ..+....+.... . .-...++|+||.+|| |..+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~-~~~~~~~~~~v~----~~p~~~~v~~~~--~-~~~~~~~D~IiavGG-GS~i 96 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQ-AGVEVVVFDKVE----PNPTTTTVMEGA--A-LAREEGCDFVVGLGG-GSSM 96 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHH-cCCeEEEeCCcc----CCCCHHHHHHHH--H-HHHHcCCCEEEEeCC-ccHH
Confidence 78999997654 344566788888864 466665422221 011100000000 0 001247899999999 9999
Q ss_pred HHHHhc
Q 001898 770 HASNLF 775 (998)
Q Consensus 770 ~Aar~~ 775 (998)
-+++.+
T Consensus 97 D~aK~i 102 (380)
T cd08185 97 DTAKAI 102 (380)
T ss_pred HHHHHH
Confidence 988764
No 144
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=64.89 E-value=11 Score=43.29 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=50.2
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 001898 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (998)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTl 768 (998)
++++||.-+.. .......++.+.|.+ .++++.+-.++. ..+....+... ... ...++|+||.+|| |+.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GSv 95 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEE-LGIEYEIFDEVE----ENPSLETIMEA----VEIAKKFNADFVIGIGG-GSP 95 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 78999987664 333445667777754 466554322221 01110000000 000 1347899999999 999
Q ss_pred HHHHHhcc------------------CCCCcEEEEeC
Q 001898 769 LHASNLFR------------------GAVPPVISFNL 787 (998)
Q Consensus 769 L~Aar~~~------------------~~~~PVLGINl 787 (998)
+-+++.+. ...+|++.|.+
T Consensus 96 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPT 132 (357)
T cd08181 96 LDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPT 132 (357)
T ss_pred HHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeC
Confidence 99998532 23578888875
No 145
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=63.33 E-value=11 Score=43.46 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=42.5
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 001898 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (998)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTl 768 (998)
++++||.-... .......++.+.|.+ .++++.+-..+.. .+....+... ... ...++|+||.+|| |..
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GSv 93 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKE-AGIEVEVFEGVEP----DPSVETVLKG----AEAMREFEPDWIIALGG-GSP 93 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHH-cCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 78898875543 334456778888853 4666554322210 1110000000 000 1247899999999 999
Q ss_pred HHHHHhc
Q 001898 769 LHASNLF 775 (998)
Q Consensus 769 L~Aar~~ 775 (998)
+-+++.+
T Consensus 94 iD~AK~i 100 (375)
T cd08179 94 IDAAKAM 100 (375)
T ss_pred HHHHHHH
Confidence 9988865
No 146
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=63.02 E-value=57 Score=33.65 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=47.5
Q ss_pred CCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHH-----hhhcCCcEEEEEec---CCCCCCCHHHHHHHHHHH-hc
Q 001898 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDD-----AILSGKVELIKIPV---EVRTAPTMEQVEKFASLV-SN 344 (998)
Q Consensus 274 qpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~-----~~e~~GI~yIhIPV---~d~~~ps~e~v~~flelL-~d 344 (998)
.++.+++..+.+.+=..|||.|+.+.....+. .... .-...|- +++|. .....+..+.+.+.+..+ ..
T Consensus 37 ~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~-~G~~~~~~~~~HIPGA--v~ip~~~~~~l~~~~~~~~~~~l~~~~~~ 113 (162)
T TIGR03865 37 VLDTEAAQALLARGPVALIDVYPRPPKPKNLL-EGTVWRDEPRLNIPGS--LWLPNTGYGNLAPAWQAYFRRGLERATGG 113 (162)
T ss_pred ccCHHHHHHHHhCCCcEEEECCCCcccccccc-ccceeccccCCCCCCc--EEecccCCCCCCCchhHHHHHHHHHhcCC
Confidence 46888888776665456999997541000010 0000 0012232 23342 212222222233322211 11
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
..+.||+++|..|.-|+..++.++ ..+|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L-~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRA-LAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHH-HhcCCc
Confidence 356799999999875666554444 335654
No 147
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=62.88 E-value=29 Score=40.21 Aligned_cols=28 Identities=11% Similarity=-0.027 Sum_probs=20.5
Q ss_pred CCCcEEEeCc-CCCChHHHHHHHHHHHcCCC
Q 001898 346 SKKPLYLHSK-EGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 346 ~~~PVLVHCt-AGKDRTG~vvaLll~llGVs 375 (998)
.+.+|+++|. .|. |++.++.++. .+|..
T Consensus 87 ~~~~ivvyC~rgG~-RS~~aa~~L~-~~G~~ 115 (345)
T PRK11784 87 ANPRGLLYCWRGGL-RSGSVQQWLK-EAGID 115 (345)
T ss_pred CCCeEEEEECCCCh-HHHHHHHHHH-HcCCC
Confidence 5679999996 555 9998876555 35763
No 148
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=62.66 E-value=15 Score=41.97 Aligned_cols=97 Identities=13% Similarity=0.175 Sum_probs=55.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~ 770 (998)
++++||.-.... .....++.+.|.+ .++++.+-..+. ..+....+.... ..-...++|+||.+|| |+++-
T Consensus 23 ~r~liv~d~~~~-~~~~~~v~~~l~~-~~~~~~~~~~~~----~~p~~~~v~~~~---~~~~~~~~d~iiavGG-Gs~~D 92 (345)
T cd08171 23 KKVVVIGGKTAL-AAAKDKIKAALEQ-SGIEITDFIWYG----GESTYENVERLK---KNPAVQEADMIFAVGG-GKAID 92 (345)
T ss_pred CEEEEEeCHHHH-HHHHHHHHHHHHH-CCCeEEEEEecC----CCCCHHHHHHHH---HHHhhcCCCEEEEeCC-cHHHH
Confidence 789999765432 2335677777754 466554211110 001100000000 0001347899999999 99999
Q ss_pred HHHhcc-CCCCcEEEEeC--CCCcccCCCC
Q 001898 771 ASNLFR-GAVPPVISFNL--GSLGFLTSHP 797 (998)
Q Consensus 771 Aar~~~-~~~~PVLGINl--G~LGFLt~~~ 797 (998)
+++.+. ...+|++-|.+ |+=+..+.+.
T Consensus 93 ~aK~ia~~~~~p~i~VPTt~gtgse~t~~a 122 (345)
T cd08171 93 TVKVLADKLGKPVFTFPTIASNCAAVTAVS 122 (345)
T ss_pred HHHHHHHHcCCCEEEecCccccCccccceE
Confidence 999764 34789999975 6666655543
No 149
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=62.18 E-value=36 Score=32.29 Aligned_cols=77 Identities=19% Similarity=0.175 Sum_probs=39.8
Q ss_pred CCHhhHHHHHhcC------CcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCC
Q 001898 275 VTEEGLKWLMEKG------YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK 348 (998)
Q Consensus 275 pT~eDl~~L~elG------IKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~ 348 (998)
++++++..+.+.+ =-.|||.|+.+ +. .....| -+++|+.... +.+.+..+.+......
T Consensus 4 is~~el~~~l~~~~~~~~~~~~iiDvR~~e-----f~-----~ghipg--Ai~ip~~~~~----~~~~~~~~~~~~~~~~ 67 (113)
T cd01443 4 ISPEELVALLENSDSNAGKDFVVVDLRRDD-----YE-----GGHIKG--SINLPAQSCY----QTLPQVYALFSLAGVK 67 (113)
T ss_pred cCHHHHHHHHhCCccccCCcEEEEECCchh-----cC-----CCcccC--ceecchhHHH----HHHHHHHHHhhhcCCC
Confidence 4677777776665 23689999752 11 001122 3566765211 1122222222123456
Q ss_pred cEEEeCcCCCChHHHHHHH
Q 001898 349 PLYLHSKEGVWRTYAMVSR 367 (998)
Q Consensus 349 PVLVHCtAGKDRTG~vvaL 367 (998)
+|++||..|-.|+-.++..
T Consensus 68 ~iv~~C~~~g~rs~~a~~~ 86 (113)
T cd01443 68 LAIFYCGSSQGRGPRAARW 86 (113)
T ss_pred EEEEECCCCCcccHHHHHH
Confidence 8999999753376555433
No 150
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=62.15 E-value=9 Score=44.68 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=42.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTl 768 (998)
.++++||.-+.-.......++.+.|.+ .|+++.+-..+. ..+....+... ... ...++|+||.+|| |..
T Consensus 21 ~~k~liVtd~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 90 (398)
T cd08178 21 KKRAFIVTDRFMVKLGYVDKVIDVLKR-RGVETEVFSDVE----PDPSLETVRKG----LELMNSFKPDTIIALGG-GSP 90 (398)
T ss_pred CCeEEEEcChhHHhCccHHHHHHHHHH-CCCeEEEecCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 378999985432222356678888864 467665432221 01110000000 001 1347899999999 999
Q ss_pred HHHHHhc
Q 001898 769 LHASNLF 775 (998)
Q Consensus 769 L~Aar~~ 775 (998)
+-+++.+
T Consensus 91 iD~AK~i 97 (398)
T cd08178 91 MDAAKIM 97 (398)
T ss_pred HHHHHHH
Confidence 9888765
No 151
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=62.03 E-value=12 Score=43.42 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=42.0
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTlL 769 (998)
++++||.-..-.......++.+.|.+ .++++.+-.++. ..+....+... ... ...++|+||.+|| |..+
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~i 100 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDA-AGLAYEIYDGVK----PNPTIEVVKEG----VEVFKASGADYLIAIGG-GSPQ 100 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHH-CCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-hHHH
Confidence 78999987543223356678888854 466554432221 01111000000 001 1247899999999 9999
Q ss_pred HHHHhc
Q 001898 770 HASNLF 775 (998)
Q Consensus 770 ~Aar~~ 775 (998)
-+++.+
T Consensus 101 D~aK~i 106 (382)
T PRK10624 101 DTCKAI 106 (382)
T ss_pred HHHHHH
Confidence 999753
No 152
>PRK07411 hypothetical protein; Validated
Probab=61.78 E-value=16 Score=42.91 Aligned_cols=84 Identities=23% Similarity=0.236 Sum_probs=47.7
Q ss_pred CCCHhhHHHHHhcCC--cEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEE
Q 001898 274 QVTEEGLKWLMEKGY--KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLY 351 (998)
Q Consensus 274 qpT~eDl~~L~elGI--KTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVL 351 (998)
.++.+++..+.+.+- -.|||.|+.++ +. .....| -+++|+.+.... ....++.++ ..+.||+
T Consensus 283 ~Is~~el~~~l~~~~~~~vlIDVR~~~E----~~-----~ghIpG--AiniP~~~l~~~--~~~~~l~~l---~~d~~IV 346 (390)
T PRK07411 283 EMTVTELKALLDSGADDFVLIDVRNPNE----YE-----IARIPG--SVLVPLPDIENG--PGVEKVKEL---LNGHRLI 346 (390)
T ss_pred ccCHHHHHHHHhCCCCCeEEEECCCHHH----hc-----cCcCCC--CEEccHHHhhcc--cchHHHhhc---CCCCeEE
Confidence 467888887666553 36899999641 10 011122 345665422111 011223222 2467999
Q ss_pred EeCcCCCChHHHHHHHHHHHcCCC
Q 001898 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 352 VHCtAGKDRTG~vvaLll~llGVs 375 (998)
+||..|. |+..++..++ .+|..
T Consensus 347 vyC~~G~-RS~~aa~~L~-~~G~~ 368 (390)
T PRK07411 347 AHCKMGG-RSAKALGILK-EAGIE 368 (390)
T ss_pred EECCCCH-HHHHHHHHHH-HcCCC
Confidence 9999998 9988765554 46764
No 153
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=61.66 E-value=7.5 Score=47.50 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=27.7
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC
Q 001898 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL 787 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGINl 787 (998)
-+.|.+|++|||||+-.|+.+.. +..++|+||-.
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPk 198 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPK 198 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 36899999999999988887653 45699999943
No 154
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=61.62 E-value=21 Score=41.46 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=44.1
Q ss_pred CCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 001898 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (998)
Q Consensus 275 pT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHC 354 (998)
++.+++..+.+.+ -.|||.|+++ + |. .-...| -+++|.. .+.+.+..+....+.+|+++|
T Consensus 5 is~~el~~~l~~~-~~ivDvR~~~-e---~~-----~ghIpg--Ai~ip~~--------~l~~~~~~~~~~~~~~IvvyC 64 (376)
T PRK08762 5 ISPAEARARAAQG-AVLIDVREAH-E---RA-----SGQAEG--ALRIPRG--------FLELRIETHLPDRDREIVLIC 64 (376)
T ss_pred eCHHHHHHHHhCC-CEEEECCCHH-H---Hh-----CCcCCC--CEECCHH--------HHHHHHhhhcCCCCCeEEEEc
Confidence 4677777776667 4799999864 1 11 001112 1344432 333333322113567999999
Q ss_pred cCCCChHHHHHHHHHHHcCCC
Q 001898 355 KEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 355 tAGKDRTG~vvaLll~llGVs 375 (998)
..|. |+..++.++ ..+|.+
T Consensus 65 ~~G~-rs~~aa~~L-~~~G~~ 83 (376)
T PRK08762 65 ASGT-RSAHAAATL-RELGYT 83 (376)
T ss_pred CCCc-HHHHHHHHH-HHcCCC
Confidence 9987 876655444 334553
No 155
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=61.42 E-value=8.5 Score=44.30 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=43.1
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl-~~~~DlVIvLGGDGTl 768 (998)
.++++||.-..-.......++.+.|.+ .|+++.+-..+. ..+....+... .... ..++|+||.+|| |++
T Consensus 24 ~~~~liv~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-GSv 93 (370)
T cd08192 24 IKRPLIVTDPGLAALGLVARVLALLED-AGLAAALFDEVP----PNPTEAAVEAG----LAAYRAGGCDGVIAFGG-GSA 93 (370)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 378999987554333356778888854 466654322211 01110000000 0011 257899999999 999
Q ss_pred HHHHHhc
Q 001898 769 LHASNLF 775 (998)
Q Consensus 769 L~Aar~~ 775 (998)
+-+++.+
T Consensus 94 iD~aK~i 100 (370)
T cd08192 94 LDLAKAV 100 (370)
T ss_pred HHHHHHH
Confidence 9988764
No 156
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=61.38 E-value=13 Score=43.11 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=50.8
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTl 768 (998)
.++++||.-+.. .......++.+.|.+ .|+++.+-..+. ..+....+.... ..-...++|+||.+|| |+.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~~---~~~~~~~~D~IIaiGG-GS~ 98 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKE-AGIEVVELGGVE----PNPRLETVREGI---ELCKEEKVDFILAVGG-GSV 98 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHH-cCCeEEEECCcc----CCCCHHHHHHHH---HHHHHcCCCEEEEeCC-hHH
Confidence 378999976543 233445677777753 467665432221 001100000000 0001247899999999 999
Q ss_pred HHHHHhccC-------------------CCCcEEEEeC
Q 001898 769 LHASNLFRG-------------------AVPPVISFNL 787 (998)
Q Consensus 769 L~Aar~~~~-------------------~~~PVLGINl 787 (998)
+-+++.+.- ..+|++.|.+
T Consensus 99 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 99 IDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred HHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 999986522 3579999986
No 157
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=61.06 E-value=14 Score=38.63 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=25.7
Q ss_pred CccEEEEEcCCchH------HHHHHhccCCCCcEEEEeCCC
Q 001898 755 RVDFVACLGGDGVI------LHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 755 ~~DlVIvLGGDGTl------L~Aar~~~~~~~PVLGINlG~ 789 (998)
++|.||+.||.|.. +...+.+ ...+|||||-+|.
T Consensus 43 ~~~~iilsgGP~~~~~~~~~~~~i~~~-~~~~PiLGIC~G~ 82 (191)
T PRK06774 43 APSHLVISPGPCTPNEAGISLAVIRHF-ADKLPILGVCLGH 82 (191)
T ss_pred CCCeEEEcCCCCChHhCCCchHHHHHh-cCCCCEEEECHHH
Confidence 57999999999984 3334444 3479999998875
No 158
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=60.72 E-value=8 Score=47.54 Aligned_cols=54 Identities=26% Similarity=0.286 Sum_probs=37.4
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC-------C-----CCcccCCCCcccHHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSHPFEDYRQDLRQVI 809 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGINl-------G-----~LGFLt~~~~eel~~~L~~il 809 (998)
-+.|.+|++|||||+-.|+.+.. +..++|+||-. | ++||=|... -+-+.+.++.
T Consensus 189 l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k--~~a~~I~ni~ 259 (568)
T PLN02251 189 LDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACK--IYSEMIGNVM 259 (568)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHH--HHHHHHHHHH
Confidence 36899999999999999887543 35589999953 2 567776532 2334444443
No 159
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=60.62 E-value=10 Score=43.61 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=53.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl-~~~~DlVIvLGGDGTl 768 (998)
.++++||.-..........++.+.|.+ .++++.+-..+. ..+....+... .... ..++|+||.+|| |++
T Consensus 23 ~~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~~~----~~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs~ 92 (370)
T cd08551 23 GRKALIVTDPGLVKTGVLDKVIDSLKE-AGIEVVIFDGVE----PNPTLSNVDAA----VAAYREEGCDGVIAVGG-GSV 92 (370)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEECCCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999986553223455677788753 456555322211 00110000000 0011 246899999999 999
Q ss_pred HHHHHhccC-------------------CCCcEEEEeC--CCCcccCC
Q 001898 769 LHASNLFRG-------------------AVPPVISFNL--GSLGFLTS 795 (998)
Q Consensus 769 L~Aar~~~~-------------------~~~PVLGINl--G~LGFLt~ 795 (998)
+-+++.+.. ..+|++.|.+ |+=+..+.
T Consensus 93 ~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~ 140 (370)
T cd08551 93 LDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTP 140 (370)
T ss_pred HHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCC
Confidence 999987531 1579988875 44334443
No 160
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=60.19 E-value=12 Score=43.33 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=42.1
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTl 768 (998)
.++++||....-.......++.+.|.+ .++++.+-.++. ..+....+... ... ...++|+||.+|| |.+
T Consensus 29 ~~r~lvvt~~~~~~~g~~~~v~~~L~~-~~i~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IiaiGG-GSv 98 (379)
T TIGR02638 29 FKKALVVTDKDLIKFGVADKVTDLLDE-AGIAYELFDEVK----PNPTITVVKAG----VAAFKASGADYLIAIGG-GSP 98 (379)
T ss_pred CCEEEEEcCcchhhccchHHHHHHHHH-CCCeEEEECCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-hHH
Confidence 379999987553222356677788753 466655433221 01111000000 000 1247899999999 999
Q ss_pred HHHHHh
Q 001898 769 LHASNL 774 (998)
Q Consensus 769 L~Aar~ 774 (998)
+-+++.
T Consensus 99 iD~aKa 104 (379)
T TIGR02638 99 IDTAKA 104 (379)
T ss_pred HHHHHH
Confidence 998864
No 161
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=60.18 E-value=14 Score=42.22 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=48.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEE---EEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCc
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNI---LVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V---~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDG 766 (998)
.++++||.-..-... ...++.+.|.+ .|+++ .++.... .+....+......-.+.-..+.|+||.+|| |
T Consensus 20 ~~~~livtd~~~~~~-~~~~v~~~L~~-~g~~~~~~~~~~~e~-----~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-G 91 (344)
T TIGR01357 20 PSKLVIITDETVADL-YADKLLEALQA-LGYNVLKLTVPDGEE-----SKSLETVQRLYDQLLEAGLDRSSTIIALGG-G 91 (344)
T ss_pred CCeEEEEECCchHHH-HHHHHHHHHHh-cCCceeEEEeCCCCC-----CCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-h
Confidence 378999985543222 46778888854 35543 2221100 000000000000000001134699999999 9
Q ss_pred hHHHHHHhcc---CCCCcEEEEeC
Q 001898 767 VILHASNLFR---GAVPPVISFNL 787 (998)
Q Consensus 767 TlL~Aar~~~---~~~~PVLGINl 787 (998)
+++-+++.+. ...+|++-|.+
T Consensus 92 sv~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 92 VVGDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHHHHccCCCEEEecC
Confidence 9999888764 45789888876
No 162
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=60.07 E-value=8.4 Score=47.27 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=27.1
Q ss_pred CccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEe
Q 001898 755 RVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 786 (998)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN 786 (998)
+.|.+|++|||||+-.|..+.. +..+||+||-
T Consensus 164 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIP 200 (555)
T PRK07085 164 KLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVP 200 (555)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEe
Confidence 7899999999999998887653 3589999994
No 163
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=59.89 E-value=13 Score=43.04 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=43.4
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCch
Q 001898 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (998)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl-~~~~DlVIvLGGDGT 767 (998)
.++++||.-... .......++.+.|.+ .++++.+-..+. ..+....+... .+.+ ..++|+||.+|| |+
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 95 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDE-HGIEYVLYNKVT----PNPTVDQVDEA----AKLGREFGAQAVIAIGG-GS 95 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHHcCCCEEEEeCC-cc
Confidence 378999986653 334456778888854 466655433221 11111100000 0011 246899999999 99
Q ss_pred HHHHHHhc
Q 001898 768 ILHASNLF 775 (998)
Q Consensus 768 lL~Aar~~ 775 (998)
++-+++.+
T Consensus 96 ~iD~aK~i 103 (383)
T cd08186 96 PIDSAKSA 103 (383)
T ss_pred HHHHHHHH
Confidence 99988765
No 164
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=59.79 E-value=15 Score=44.98 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=27.2
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHH
Q 001898 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQI 379 (998)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG~vvaLll~llGVs~ddI 379 (998)
..+.+|||||.-|.|||..+..|...++.=...+|
T Consensus 342 ~~~~sVlvhcsdGwDrT~qV~SLaQllLDP~yRTi 376 (573)
T KOG1089|consen 342 SEGASVLVHCSDGWDRTCQVSSLAQLLLDPYYRTI 376 (573)
T ss_pred hCCCeEEEEccCCcchhHHHHHHHHHHhCchhhhH
Confidence 45579999999999999999988877555444443
No 165
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=59.15 E-value=25 Score=41.21 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=46.4
Q ss_pred CCCHhhHHHHHhcCCc-EEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 001898 274 QVTEEGLKWLMEKGYK-TIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (998)
Q Consensus 274 qpT~eDl~~L~elGIK-TVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLV 352 (998)
.++++++..+.+.+-. .|||+|+.+ + +. .....| -+++|+.... ..+ -+..+ ..+.|+++
T Consensus 288 ~Is~~el~~~l~~~~~~~lIDvR~~~-e---f~-----~ghIpG--Ainip~~~l~--~~~----~~~~l--~~d~~iVv 348 (392)
T PRK07878 288 TITPRELKEWLDSGKKIALIDVREPV-E---WD-----IVHIPG--AQLIPKSEIL--SGE----ALAKL--PQDRTIVL 348 (392)
T ss_pred ccCHHHHHHHHhCCCCeEEEECCCHH-H---Hh-----cCCCCC--CEEcChHHhc--chh----HHhhC--CCCCcEEE
Confidence 4688888877766533 699999975 1 10 111122 2456654211 111 11223 35679999
Q ss_pred eCcCCCChHHHHHHHHHHHcCCC
Q 001898 353 HSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 353 HCtAGKDRTG~vvaLll~llGVs 375 (998)
+|..|. |+..++..++ .+|.+
T Consensus 349 yC~~G~-rS~~aa~~L~-~~G~~ 369 (392)
T PRK07878 349 YCKTGV-RSAEALAALK-KAGFS 369 (392)
T ss_pred EcCCCh-HHHHHHHHHH-HcCCC
Confidence 999998 8766655444 35654
No 166
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=59.13 E-value=24 Score=40.24 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=49.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCCh-hhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV-HDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~-~~~~~~~~~~~~~~~~~~~~~~dl-~~~~DlVIvLGGDGTl 768 (998)
++++||.-..-.. ....++.+.|.+...+.+++.++- .+.+.. .. +.+ ..++|+||.+|| |++
T Consensus 26 ~~~liv~d~~~~~-~~~~~v~~~l~~~~~~~~~~~~~~~~~~v~~---------~~----~~~~~~~~d~iIaiGG-Gs~ 90 (339)
T cd08173 26 GRVLVVTGPTTKS-IAGKKVEALLEDEGEVDVVIVEDATYEEVEK---------VE----SSARDIGADFVIGVGG-GRV 90 (339)
T ss_pred CeEEEEECCchHH-HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH---------HH----HHhhhcCCCEEEEeCC-chH
Confidence 6889988654322 345677777754322334433321 111100 00 011 136899999999 999
Q ss_pred HHHHHhcc-CCCCcEEEEeC
Q 001898 769 LHASNLFR-GAVPPVISFNL 787 (998)
Q Consensus 769 L~Aar~~~-~~~~PVLGINl 787 (998)
+-+++.+. ...+|++-|.+
T Consensus 91 ~D~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 91 IDVAKVAAYKLGIPFISVPT 110 (339)
T ss_pred HHHHHHHHHhcCCCEEEecC
Confidence 99999764 34689998875
No 167
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=58.93 E-value=24 Score=40.35 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=50.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTl 768 (998)
.++++||.-..-.. ....++.+.|.+ .++++.+.. +. ..+....+... .+. ...++|+||.+|| |..
T Consensus 22 ~~r~livt~~~~~~-~~~~~v~~~L~~-~~i~~~~~~-~~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~ 89 (351)
T cd08170 22 GKRALIIADEFVLD-LVGAKIEESLAA-AGIDARFEV-FG----GECTRAEIERL----AEIARDNGADVVIGIGG-GKT 89 (351)
T ss_pred CCeEEEEECHHHHH-HHHHHHHHHHHh-CCCeEEEEE-eC----CcCCHHHHHHH----HHHHhhcCCCEEEEecC-chh
Confidence 37899998543322 456778888854 466653221 10 01110000000 001 1247899999999 999
Q ss_pred HHHHHhccC-CCCcEEEEeC
Q 001898 769 LHASNLFRG-AVPPVISFNL 787 (998)
Q Consensus 769 L~Aar~~~~-~~~PVLGINl 787 (998)
+-+++.+.. ..+|++.|.+
T Consensus 90 iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 90 LDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred hHHHHHHHHHcCCCEEEeCC
Confidence 999997643 4689999975
No 168
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=58.92 E-value=20 Score=40.93 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=49.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~ 770 (998)
++++||..+.-.... ..++.+.|.+ .++++.+...... ...+....+... ...+.+++|+||.||| |.++-
T Consensus 24 ~~~livtd~~~~~~~-~~~v~~~l~~-~~i~~~~~~~~~~--~~~pt~~~v~~~----~~~~~~~~d~IIaIGG-Gs~~D 94 (348)
T cd08175 24 KKALIVADENTYAAA-GKKVEALLKR-AGVVVLLIVLPAG--DLIADEKAVGRV----LKELERDTDLIIAVGS-GTIND 94 (348)
T ss_pred CcEEEEECCcHHHHH-HHHHHHHHHH-CCCeeEEeecCCC--cccCCHHHHHHH----HHHhhccCCEEEEECC-cHHHH
Confidence 688999865432222 4678888854 4664432111000 000111000000 0111127899999999 99999
Q ss_pred HHHhcc-CCCCcEEEEeC
Q 001898 771 ASNLFR-GAVPPVISFNL 787 (998)
Q Consensus 771 Aar~~~-~~~~PVLGINl 787 (998)
+++.+. ...+|++-|.+
T Consensus 95 ~aK~vA~~~~~p~i~IPT 112 (348)
T cd08175 95 ITKYVSYKTGIPYISVPT 112 (348)
T ss_pred HHHHHHHhcCCCEEEecC
Confidence 999774 35689999975
No 169
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=58.77 E-value=15 Score=41.29 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=27.5
Q ss_pred CCccEEEEEcCCchHHHHHHhccC---CCCcEEEEeC
Q 001898 754 ERVDFVACLGGDGVILHASNLFRG---AVPPVISFNL 787 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~---~~~PVLGINl 787 (998)
.++|+||.+|| |+++-+++.+.. ..+|++-|.+
T Consensus 77 ~~~d~IIaiGG-Gs~~D~aK~ia~~~~~~~p~i~iPT 112 (332)
T cd07766 77 AEVDAVIAVGG-GSTLDTAKAVAALLNRGLPIIIVPT 112 (332)
T ss_pred cCcCEEEEeCC-chHHHHHHHHHHHhcCCCCEEEEeC
Confidence 47899999999 999999987642 2789999975
No 170
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=58.70 E-value=9 Score=47.47 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=27.1
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEe
Q 001898 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 786 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN 786 (998)
-+.|.+|++|||||+-.|+.+.. +..++|+||-
T Consensus 172 l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIP 209 (610)
T PLN03028 172 LKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVP 209 (610)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEec
Confidence 36899999999999998887543 3479999993
No 171
>PRK06186 hypothetical protein; Validated
Probab=58.25 E-value=24 Score=38.82 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=30.8
Q ss_pred cCCccEEEEEcCCch-----HHHHHHhccCCCCcEEEEeCC
Q 001898 753 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (998)
Q Consensus 753 ~~~~DlVIvLGGDGT-----lL~Aar~~~~~~~PVLGINlG 788 (998)
.+++|-|++.||=|. .+.|+++....++|+|||-+|
T Consensus 51 l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClG 91 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGG 91 (229)
T ss_pred HhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechh
Confidence 457899999999775 677888888889999999888
No 172
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=57.71 E-value=16 Score=43.94 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=38.8
Q ss_pred cEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHH
Q 001898 289 KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRW 368 (998)
Q Consensus 289 KTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHCtAGKDRTG~vvaLl 368 (998)
..+||.|++++ |. ...+...+++.+|+|+. .+...+.-+ ..++|++++|.+|. |+..++..+
T Consensus 408 ~~lIDVR~~~E----~~---~~hI~g~~~~a~niP~~--------~l~~~~~~l--~~~~~iivyC~~G~-rS~~aa~~L 469 (482)
T PRK01269 408 DVIIDIRSPDE----QE---DKPLKLEGVEVKSLPFY--------KLSTQFGDL--DQSKTYLLYCDRGV-MSRLQALYL 469 (482)
T ss_pred CEEEECCCHHH----Hh---cCCCCCCCceEEECCHH--------HHHHHHhhc--CCCCeEEEECCCCH-HHHHHHHHH
Confidence 35888888641 10 01111112566777764 232222223 34679999999999 888887666
Q ss_pred HHHcCC
Q 001898 369 RQYMAR 374 (998)
Q Consensus 369 l~llGV 374 (998)
.. +|.
T Consensus 470 ~~-~G~ 474 (482)
T PRK01269 470 RE-QGF 474 (482)
T ss_pred HH-cCC
Confidence 54 565
No 173
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=57.23 E-value=9.9 Score=46.62 Aligned_cols=43 Identities=30% Similarity=0.372 Sum_probs=32.7
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC-------C-----CCcccCCC
Q 001898 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSH 796 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGINl-------G-----~LGFLt~~ 796 (998)
-+.|.+|++|||||+-.|+.+.. +..++|+||-. | ++||=|..
T Consensus 165 ~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~ 224 (550)
T cd00765 165 LDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTAT 224 (550)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHH
Confidence 36899999999999998877543 34589999953 3 56777653
No 174
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=56.88 E-value=24 Score=40.67 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=49.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCch
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~--ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGT 767 (998)
.++++||.-..-.. ....++.+.|.+ .++++. +-+... ..+....+......-.+.-..+.|+||.+|| |+
T Consensus 31 ~~~~livtd~~~~~-~~~~~v~~~L~~-~gi~~~~~~~~~~e----~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gs 103 (358)
T PRK00002 31 GKKVAIVTDETVAP-LYLEKLRASLEA-AGFEVDVVVLPDGE----QYKSLETLEKIYDALLEAGLDRSDTLIALGG-GV 103 (358)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHh-cCCceEEEEeCCCC----CCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cH
Confidence 47899998655422 356778888854 355433 211110 0000000000000000001134699999999 99
Q ss_pred HHHHHHhcc---CCCCcEEEEeC
Q 001898 768 ILHASNLFR---GAVPPVISFNL 787 (998)
Q Consensus 768 lL~Aar~~~---~~~~PVLGINl 787 (998)
++-+++.++ ..++|++-|.+
T Consensus 104 v~D~aK~iA~~~~~gip~i~IPT 126 (358)
T PRK00002 104 IGDLAGFAAATYMRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHHhcCCCCEEEcCc
Confidence 999998764 45789888876
No 175
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=56.54 E-value=16 Score=41.54 Aligned_cols=85 Identities=19% Similarity=0.176 Sum_probs=49.1
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl-~~~~DlVIvLGGDGTl 768 (998)
.++++||.-..-... ...++.+.|.+. ++.++-+-. ..+....+... .... ..++|+||.+|| |++
T Consensus 23 ~~~~livt~~~~~~~-~~~~v~~~l~~~-~~~~~~~~~------~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-Gs~ 89 (337)
T cd08177 23 ASRALVLTTPSLATK-LAERVASALGDR-VAGTFDGAV------MHTPVEVTEAA----VAAAREAGADGIVAIGG-GST 89 (337)
T ss_pred CCeEEEEcChHHHHH-HHHHHHHHhccC-CcEEeCCCC------CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHH
Confidence 378999986543223 567788888543 443331100 00100000000 0011 257899999999 999
Q ss_pred HHHHHhccC-CCCcEEEEeC
Q 001898 769 LHASNLFRG-AVPPVISFNL 787 (998)
Q Consensus 769 L~Aar~~~~-~~~PVLGINl 787 (998)
+-+++.+.. ..+|++-|.+
T Consensus 90 iD~aK~ia~~~~~p~i~IPT 109 (337)
T cd08177 90 IDLAKAIALRTGLPIIAIPT 109 (337)
T ss_pred HHHHHHHHHHhcCCEEEEcC
Confidence 999987643 3689998875
No 176
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=56.45 E-value=9.4 Score=50.65 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=33.7
Q ss_pred CCccEEEEEcCCchHHHHHHhccC----------CCCcEEEEeC-------C-----CCcccCCCC
Q 001898 754 ERVDFVACLGGDGVILHASNLFRG----------AVPPVISFNL-------G-----SLGFLTSHP 797 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~----------~~~PVLGINl-------G-----~LGFLt~~~ 797 (998)
.+.|.+|+||||||+-.|+.+... ..+||+||-. | ++||-|..+
T Consensus 799 ~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~ 864 (1328)
T PTZ00468 799 FNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTK 864 (1328)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHH
Confidence 368999999999999998876532 3799999953 2 567777643
No 177
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=55.44 E-value=29 Score=39.51 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 330 PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 330 ps~e~v~~flelL~d~~~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
.+.+.+++.+.-+.-..+.||+++|..|. |+..++..+. .+|.+
T Consensus 252 ~~~~el~~~~~~~gi~~~~~iv~yC~sG~-~A~~~~~~L~-~~G~~ 295 (320)
T PLN02723 252 LPAEELKKRFEQEGISLDSPIVASCGTGV-TACILALGLH-RLGKT 295 (320)
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCCC
Confidence 34566666554321135679999999987 7766655554 56764
No 178
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=55.28 E-value=24 Score=40.33 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=48.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCC--eEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCch
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEK--MNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g--i~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGT 767 (998)
.++++||.-..-.. ....++.+.|.+. | ..+++-+... ..+....+......-.+.-..+.|+||.+|| |+
T Consensus 24 ~~~~livtd~~~~~-~~~~~l~~~L~~~-g~~~~~~~~~~~e----~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gs 96 (345)
T cd08195 24 GSKILIVTDENVAP-LYLEKLKAALEAA-GFEVEVIVIPAGE----ASKSLETLEKLYDALLEAGLDRKSLIIALGG-GV 96 (345)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHhc-CCceEEEEeCCCC----CcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hH
Confidence 47899998655322 3567788887543 4 3333211110 0010000000000000011234599999999 99
Q ss_pred HHHHHHhcc---CCCCcEEEEeC
Q 001898 768 ILHASNLFR---GAVPPVISFNL 787 (998)
Q Consensus 768 lL~Aar~~~---~~~~PVLGINl 787 (998)
++-++..++ ..++|++-|.+
T Consensus 97 v~D~ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 97 VGDLAGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred HHhHHHHHHHHHhcCCCeEEcch
Confidence 999988764 45788888765
No 179
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=55.20 E-value=10 Score=48.02 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=38.6
Q ss_pred CCccEEEEEcCCchHHHHHHhcc------CCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~------~~~~PVLGINl-------G---~LGFLt~~~~eel~~~L~~il 809 (998)
-+.|.+|++|||||+-.|..+.. ...+||+||-. | ++||-|..+ .+.++++++.
T Consensus 477 ~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~--~~~~~id~i~ 546 (745)
T TIGR02478 477 HKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALN--EITEYCDNIK 546 (745)
T ss_pred cCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHH--HHHHHHHHHH
Confidence 36899999999999988776653 25699999953 2 688888743 3345555443
No 180
>PLN02834 3-dehydroquinate synthase
Probab=55.14 E-value=18 Score=43.06 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=24.8
Q ss_pred ccEEEEEcCCchHHHHHHhcc---CCCCcEEEEeCC
Q 001898 756 VDFVACLGGDGVILHASNLFR---GAVPPVISFNLG 788 (998)
Q Consensus 756 ~DlVIvLGGDGTlL~Aar~~~---~~~~PVLGINlG 788 (998)
.|+||.+|| |+++-+++..+ ..++|++-|.+.
T Consensus 164 ~~~VIAiGG-Gsv~D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 164 RCTFVALGG-GVIGDMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred CcEEEEECC-hHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 459999999 99999988542 457888777663
No 181
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=55.11 E-value=21 Score=41.15 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=40.1
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl-~~~~DlVIvLGGDGTl 768 (998)
.++++||.-.... ....+.+.|.+ .++++.+-..+.. .+.+..+... .+.. ..++|+||.+|| |+.
T Consensus 23 ~~~~livtd~~~~---~~~~~~~~l~~-~~~~~~~~~~~~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-Gs~ 89 (367)
T cd08182 23 GKRVLLVTGPRSA---IASGLTDILKP-LGTLVVVFDDVQP----NPDLEDLAAG----IRLLREFGPDAVLAVGG-GSV 89 (367)
T ss_pred CCeEEEEeCchHH---HHHHHHHHHHH-cCCeEEEEcCcCC----CcCHHHHHHH----HHHHHhcCcCEEEEeCC-cHH
Confidence 3789999866543 34456666653 3565554322210 1111000000 0011 246899999999 999
Q ss_pred HHHHHhc
Q 001898 769 LHASNLF 775 (998)
Q Consensus 769 L~Aar~~ 775 (998)
+-+++.+
T Consensus 90 ~D~aK~i 96 (367)
T cd08182 90 LDTAKAL 96 (367)
T ss_pred HHHHHHH
Confidence 9998865
No 182
>PTZ00287 6-phosphofructokinase; Provisional
Probab=54.95 E-value=13 Score=49.69 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=36.9
Q ss_pred CccEEEEEcCCchHHHHHHhcc---CCCCc--EEEEeC-------C-----CCcccCCCCcccHHHHHHHHH
Q 001898 755 RVDFVACLGGDGVILHASNLFR---GAVPP--VISFNL-------G-----SLGFLTSHPFEDYRQDLRQVI 809 (998)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~---~~~~P--VLGINl-------G-----~LGFLt~~~~eel~~~L~~il 809 (998)
+.|.+|++|||||+-.|+.+.. ..++| |+||-. | ++||=|..+ -+-+++.++.
T Consensus 928 ~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~--~~seaI~nL~ 997 (1419)
T PTZ00287 928 QLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTK--VYASLIGNVL 997 (1419)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHH--HHHHHHHHHH
Confidence 6899999999999999887643 24566 999953 4 677766533 2334555543
No 183
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=54.73 E-value=23 Score=40.99 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=41.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTlL 769 (998)
++++||...... .+.++...|.+ .++++.+..... .+....+... ... -..++|+||.+|| |..+
T Consensus 23 ~r~livtd~~~~---~~~~v~~~L~~-~g~~~~~~~~~~-----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~~ 88 (374)
T cd08183 23 RRVLLVTGASSL---RAAWLIEALRA-AGIEVTHVVVAG-----EPSVELVDAA----VAEARNAGCDVVIAIGG-GSVI 88 (374)
T ss_pred CcEEEEECCchH---HHHHHHHHHHH-cCCeEEEecCCC-----CcCHHHHHHH----HHHHHhcCCCEEEEecC-chHH
Confidence 789999876543 56678888854 466654422110 1110000000 001 1247999999999 9999
Q ss_pred HHHHhc
Q 001898 770 HASNLF 775 (998)
Q Consensus 770 ~Aar~~ 775 (998)
-+++.+
T Consensus 89 D~aK~i 94 (374)
T cd08183 89 DAGKAI 94 (374)
T ss_pred HHHHHH
Confidence 988754
No 184
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=54.66 E-value=22 Score=41.13 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=42.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTl 768 (998)
.++++||.-..-.......++.+.|.+ .|+++.+-..+. ..+....+... .+. ...++|+||.+|| |..
T Consensus 26 ~~~~lvvt~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-GS~ 95 (374)
T cd08189 26 VKKVLIVTDKGLVKLGLLDKVLEALEG-AGIEYAVYDGVP----PDPTIENVEAG----LALYRENGCDAILAVGG-GSV 95 (374)
T ss_pred CCeEEEEeCcchhhcccHHHHHHHHHh-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 379999986553222345677777754 466655432221 01111000000 000 1347899999999 999
Q ss_pred HHHHHhc
Q 001898 769 LHASNLF 775 (998)
Q Consensus 769 L~Aar~~ 775 (998)
+-+++.+
T Consensus 96 ~D~aK~i 102 (374)
T cd08189 96 IDCAKAI 102 (374)
T ss_pred HHHHHHH
Confidence 9988754
No 185
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=54.33 E-value=45 Score=31.53 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=39.8
Q ss_pred CCHhhHHHHHhcC--CcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 001898 275 VTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (998)
Q Consensus 275 pT~eDl~~L~elG--IKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLV 352 (998)
++++++..+...+ --.|||+|+.+ -... ...| .+++|.... ...+.++.+......+.+++|
T Consensus 4 is~~~l~~~~~~~~~~~~iiDvR~~e-~~~~---------hi~g--A~~ip~~~l----~~~~~~~~~~~~~~~~~~iv~ 67 (113)
T cd01531 4 ISPAQLKGWIRNGRPPFQVVDVRDED-YAGG---------HIKG--SWHYPSTRF----KAQLNQLVQLLSGSKKDTVVF 67 (113)
T ss_pred CCHHHHHHHHHcCCCCEEEEEcCCcc-cCCC---------cCCC--CEecCHHHH----hhCHHHHHHHHhcCCCCeEEE
Confidence 4677777776654 12589999852 1100 1112 235554411 112233332221134579999
Q ss_pred eCcCCCChHHHHHHHH
Q 001898 353 HSKEGVWRTYAMVSRW 368 (998)
Q Consensus 353 HCtAGKDRTG~vvaLl 368 (998)
||..+..|...++..+
T Consensus 68 yC~~~~~r~~~aa~~l 83 (113)
T cd01531 68 HCALSQVRGPSAARKF 83 (113)
T ss_pred EeecCCcchHHHHHHH
Confidence 9984433777775544
No 186
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=54.01 E-value=12 Score=47.66 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=39.3
Q ss_pred CCccEEEEEcCCchHHHHHHhcc------CCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 001898 754 ERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~------~~~~PVLGINl-------G---~LGFLt~~~~eel~~~L~~il 809 (998)
.++|.+|++|||||+-.+.++.. ...+|++||-. | ++||-|.++ .+-++++++.
T Consensus 477 ~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln--~~~~~id~i~ 546 (762)
T cd00764 477 YGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALN--ALMKYCDRIK 546 (762)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHH--HHHHHHHHHH
Confidence 46999999999999988776543 25799999953 3 688888643 4445555553
No 187
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=53.28 E-value=12 Score=38.70 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=25.9
Q ss_pred CCccEEEEEcCCchHH-----HHHHhccCCCCcEEEEeCCC
Q 001898 754 ERVDFVACLGGDGVIL-----HASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL-----~Aar~~~~~~~PVLGINlG~ 789 (998)
..+|.||+.||.|+.. ...+......+|||||-+|.
T Consensus 41 ~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 81 (184)
T cd01743 41 LNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred cCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhH
Confidence 5689999999999843 23333223568999998885
No 188
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=53.02 E-value=22 Score=40.45 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=46.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTl 768 (998)
.++++||.-..-.......++.+.|.+. +++.+-.++. ..+....+... .+. ...++|+||.+|| |..
T Consensus 22 ~~~~lvv~~~~~~~~g~~~~v~~~l~~~--~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs~ 90 (332)
T cd08180 22 NKRVLIVTDPFMVKSGMLDKVTDHLDSS--IEVEIFSDVV----PDPPIEVVAKG----IKKFLDFKPDIVIALGG-GSA 90 (332)
T ss_pred CCeEEEEeCchhhhCccHHHHHHHHHhc--CcEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEECC-chH
Confidence 3788999854322222456777787532 4443322211 01110000000 000 1246899999999 999
Q ss_pred HHHHHhc----c----CCCCcEEEEeC
Q 001898 769 LHASNLF----R----GAVPPVISFNL 787 (998)
Q Consensus 769 L~Aar~~----~----~~~~PVLGINl 787 (998)
+-+++.+ . ...+|++.|.+
T Consensus 91 ~D~aKa~a~~~~~~~~~~~~p~i~VPT 117 (332)
T cd08180 91 IDAAKAIIYFAKKLGKKKKPLFIAIPT 117 (332)
T ss_pred HHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 9998842 1 23479999875
No 189
>PRK05670 anthranilate synthase component II; Provisional
Probab=52.83 E-value=19 Score=37.54 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH------HHHHhccCCC
Q 001898 706 EAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL------HASNLFRGAV 779 (998)
Q Consensus 706 ~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL------~Aar~~~~~~ 779 (998)
....+++||.+ .|+++.+-+...... ...+. .++|.||+.||-|+.- ...+.+ ...
T Consensus 11 f~~~i~~~l~~-~g~~~~v~~~~~~~~--------------~~~~~--~~~dglIlsgGpg~~~d~~~~~~~l~~~-~~~ 72 (189)
T PRK05670 11 FTYNLVQYLGE-LGAEVVVYRNDEITL--------------EEIEA--LNPDAIVLSPGPGTPAEAGISLELIREF-AGK 72 (189)
T ss_pred hHHHHHHHHHH-CCCcEEEEECCCCCH--------------HHHHh--CCCCEEEEcCCCCChHHcchHHHHHHHh-cCC
Confidence 35667888865 477666543211000 00111 1379999999999862 222333 246
Q ss_pred CcEEEEeCCC
Q 001898 780 PPVISFNLGS 789 (998)
Q Consensus 780 ~PVLGINlG~ 789 (998)
+|||||-+|.
T Consensus 73 ~PvLGIClG~ 82 (189)
T PRK05670 73 VPILGVCLGH 82 (189)
T ss_pred CCEEEECHHH
Confidence 8999998885
No 190
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=52.44 E-value=37 Score=31.05 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=12.3
Q ss_pred CCCcEEEeCcCCCChH
Q 001898 346 SKKPLYLHSKEGVWRT 361 (998)
Q Consensus 346 ~~~PVLVHCtAGKDRT 361 (998)
.+.|++++|..|. |.
T Consensus 49 ~~~~ivl~c~~G~-~~ 63 (92)
T cd01532 49 RDTPIVVYGEGGG-ED 63 (92)
T ss_pred CCCeEEEEeCCCC-ch
Confidence 3679999999998 53
No 191
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=52.06 E-value=16 Score=42.90 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=43.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL 769 (998)
.++++|+....-.......++.+.|.+ .|+++.+...+.. .|....+.... ..--..++|+||.+|| |..+
T Consensus 49 ~~~~lvv~~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~~----~P~~~~v~~~~---~~~r~~~~D~IiavGG-GS~i 119 (395)
T PRK15454 49 LKHLFVMADSFLHQAGMTAGLTRSLAV-KGIAMTLWPCPVG----EPCITDVCAAV---AQLRESGCDGVIAFGG-GSVL 119 (395)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCCC----CcCHHHHHHHH---HHHHhcCcCEEEEeCC-hHHH
Confidence 378888876543333446778888854 5777654332210 11100000000 0001357999999999 9999
Q ss_pred HHHHhc
Q 001898 770 HASNLF 775 (998)
Q Consensus 770 ~Aar~~ 775 (998)
-+++.+
T Consensus 120 D~AKai 125 (395)
T PRK15454 120 DAAKAV 125 (395)
T ss_pred HHHHHH
Confidence 988764
No 192
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=51.94 E-value=23 Score=41.26 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=49.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~ 770 (998)
++++||....-.......++.+.|.+ .++++.+-..+.. .+.. ... ...-..-...++|+||.+|| |.++-
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~~~~--~~v-~~~~~~~~~~~~D~IIaiGG-GS~iD 93 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAA-AGVEVEVFDGVLP----DLPR--SEL-CDAASAAARAGPDVIIGLGG-GSCID 93 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH-cCCeEEEECCCCC----CcCH--HHH-HHHHHHHHhcCCCEEEEeCC-chHHH
Confidence 78999986443223456677777754 4666544332210 0000 000 00000011257899999999 99999
Q ss_pred HHHhccC-------------------CCCcEEEEeC
Q 001898 771 ASNLFRG-------------------AVPPVISFNL 787 (998)
Q Consensus 771 Aar~~~~-------------------~~~PVLGINl 787 (998)
+++.+.- ..+|++.|.+
T Consensus 94 ~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 129 (386)
T cd08191 94 LAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPT 129 (386)
T ss_pred HHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeC
Confidence 9986531 1579998875
No 193
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=51.72 E-value=22 Score=34.62 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=32.4
Q ss_pred HHHHHhcCCcEEEEcCCCCc-CCCchh-HhhHHhhhcCCcEEEEEecC
Q 001898 280 LKWLMEKGYKTIVDIRAERV-KDNFYE-AAIDDAILSGKVELIKIPVE 325 (998)
Q Consensus 280 l~~L~elGIKTVIDLRsee~-ee~~~~-a~e~~~~e~~GI~yIhIPV~ 325 (998)
+..|++.||+.|||.|.-.. ..+++. ......+...||.|+|+|-.
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~L 53 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPEL 53 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhh
Confidence 45688889999999887641 122222 33456677899999999964
No 194
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=50.96 E-value=31 Score=40.58 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=26.4
Q ss_pred CCccEEEEEcCCchHHHHHHhcc---CCCCcEEEEeC
Q 001898 754 ERVDFVACLGGDGVILHASNLFR---GAVPPVISFNL 787 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~---~~~~PVLGINl 787 (998)
++.|+||.+|| |+++-++..+. ..++|++-|.+
T Consensus 110 dr~d~IIaiGG-Gsv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 110 DRHSYVLAIGG-GAVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred CCCceEEEeCC-cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 45679999999 99999987663 44789888875
No 195
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=50.56 E-value=28 Score=39.80 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=17.7
Q ss_pred cEEEeCc-CCCChHHHHHHHHHHHcCC
Q 001898 349 PLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (998)
Q Consensus 349 PVLVHCt-AGKDRTG~vvaLll~llGV 374 (998)
.++++|. .|. |++.++.++.. +|.
T Consensus 76 ~vvvyC~~gG~-RS~~aa~~L~~-~G~ 100 (311)
T TIGR03167 76 QPLLYCWRGGM-RSGSLAWLLAQ-IGF 100 (311)
T ss_pred cEEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 4999996 566 99988766654 576
No 196
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=50.11 E-value=26 Score=40.42 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=50.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTlL 769 (998)
++++||....-.. ....++.+.|.+ .++++.+.. +. ..+....+... ... ...++|+||.+|| |+++
T Consensus 30 ~~~livtd~~~~~-~~~~~v~~~l~~-~~~~~~~~~-~~----~ep~~~~v~~~----~~~~~~~~~d~IIavGG-Gsv~ 97 (366)
T PRK09423 30 KRALVIADEFVLG-IVGDRVEASLKE-AGLTVVFEV-FN----GECSDNEIDRL----VAIAEENGCDVVIGIGG-GKTL 97 (366)
T ss_pred CEEEEEEChhHHH-HHHHHHHHHHHh-CCCeEEEEE-eC----CCCCHHHHHHH----HHHHHhcCCCEEEEecC-hHHH
Confidence 7899998554322 256778888854 466553221 10 01110000000 001 1246899999999 9999
Q ss_pred HHHHhcc-CCCCcEEEEeC
Q 001898 770 HASNLFR-GAVPPVISFNL 787 (998)
Q Consensus 770 ~Aar~~~-~~~~PVLGINl 787 (998)
-+++.+. ...+|++-|.+
T Consensus 98 D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 98 DTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 9999764 34689999975
No 197
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=49.93 E-value=53 Score=36.57 Aligned_cols=89 Identities=20% Similarity=0.342 Sum_probs=51.8
Q ss_pred CCCEEEEEecCChhHHH-HHHHHHHHHhcCCCeEEEEc------CChhhHhhcCCCCccceeeeccCcccc-cCCccEEE
Q 001898 689 TPRTVLVLKKPGPALME-EAKEVASFLYHQEKMNILVE------PDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVA 760 (998)
Q Consensus 689 ~pk~VlIv~K~~~~~~~-~a~~l~~~L~~~~gi~V~ve------~~~~~~~~~~~~~~~~~~~~~~~~~dl-~~~~DlVI 760 (998)
..++++||.-.+. .+ ..+++.+.|.. .|++|.+- ++..+. ..+ ...+ ..++|+||
T Consensus 18 ~~~~~lvv~d~~t--~~~~g~~v~~~l~~-~g~~v~~~~~~~~~~~~~~~-~~~-------------~~~~~~~~~d~ii 80 (250)
T PF13685_consen 18 GLKKVLVVTDENT--YKAAGEKVEESLKS-AGIEVAVIEEFVGDADEDEV-EKL-------------VEALRPKDADLII 80 (250)
T ss_dssp T-SEEEEEEETTH--HHHHHHHHHHHHHT-TT-EEEEEE-EE---BHHHH-HHH-------------HTTS--TT--EEE
T ss_pred CCCcEEEEEcCCH--HHHHHHHHHHHHHH-cCCeEEEEecCCCCCCHHHH-HHH-------------HHHhcccCCCEEE
Confidence 4579999998874 22 23567777753 46776531 111111 000 1122 35789999
Q ss_pred EEcCCchHHHHHHhcc-CCCCcEEEEeC--CCCcccCC
Q 001898 761 CLGGDGVILHASNLFR-GAVPPVISFNL--GSLGFLTS 795 (998)
Q Consensus 761 vLGGDGTlL~Aar~~~-~~~~PVLGINl--G~LGFLt~ 795 (998)
.+|| ||+.-.+++.. ..++|.+.|-+ =+-||-++
T Consensus 81 ~vGg-G~i~D~~K~~A~~~~~p~isVPTa~S~DG~aS~ 117 (250)
T PF13685_consen 81 GVGG-GTIIDIAKYAAFELGIPFISVPTAASHDGFASP 117 (250)
T ss_dssp EEES-HHHHHHHHHHHHHHT--EEEEES--SSGGGTSS
T ss_pred EeCC-cHHHHHHHHHHHhcCCCEEEeccccccccccCC
Confidence 9999 99999999876 35899999965 45667654
No 198
>PRK07053 glutamine amidotransferase; Provisional
Probab=49.88 E-value=48 Score=36.21 Aligned_cols=80 Identities=16% Similarity=0.084 Sum_probs=45.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCch--
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV-- 767 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGT-- 767 (998)
.++|+||.+...+.... +.+||.+ .|..+-+-...... ....+ ..++|.+|+.||-..
T Consensus 2 m~~ilviqh~~~e~~g~---i~~~L~~-~g~~~~v~~~~~~~---------------~~~~~-~~~~d~lii~Ggp~~~~ 61 (234)
T PRK07053 2 MKTAVAIRHVAFEDLGS---FEQVLGA-RGYRVRYVDVGVDD---------------LETLD-ALEPDLLVVLGGPIGVY 61 (234)
T ss_pred CceEEEEECCCCCCChH---HHHHHHH-CCCeEEEEecCCCc---------------cCCCC-ccCCCEEEECCCCCCCC
Confidence 46799998877543322 5666654 45544332110000 00112 246899999998542
Q ss_pred ----------HHHHHHhccCCCCcEEEEeCCC
Q 001898 768 ----------ILHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 768 ----------lL~Aar~~~~~~~PVLGINlG~ 789 (998)
++...+.+...++|||||-+|.
T Consensus 62 d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~ 93 (234)
T PRK07053 62 DDELYPFLAPEIALLRQRLAAGLPTLGICLGA 93 (234)
T ss_pred CCCcCCcHHHHHHHHHHHHHCCCCEEEECccH
Confidence 2233344445679999998886
No 199
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=49.81 E-value=70 Score=35.56 Aligned_cols=97 Identities=12% Similarity=-0.015 Sum_probs=47.6
Q ss_pred CCHhhHHHHHhcCCcEEEEcCCCCcCCCc--hhHhhHHhhhcCCcEEEEEecCC---------CCCCCHHHHHHHHHHHh
Q 001898 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNF--YEAAIDDAILSGKVELIKIPVEV---------RTAPTMEQVEKFASLVS 343 (998)
Q Consensus 275 pT~eDl~~L~elGIKTVIDLRsee~ee~~--~~a~e~~~~e~~GI~yIhIPV~d---------~~~ps~e~v~~flelL~ 343 (998)
.+++++....+.+=-.|||.|+....... .+ .+-..-...|. +++|+.. ...++.+.+.++++-+-
T Consensus 7 vs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~-~~y~~GHIpGA--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (281)
T PRK11493 7 VAADWLAEHIDDPEIQIIDARMAPPGQEDRDVA-AEYRAGHIPGA--VFFDIEALSDHTSPLPHMMPRPETFAVAMRELG 83 (281)
T ss_pred cCHHHHHHhcCCCCeEEEEeeCCCCCccccchH-HHHHhCcCCCC--EEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 46666666555433579999985311100 01 01011122333 3344321 11234566666666543
Q ss_pred cCCCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 344 d~~~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
-..+.||+++|..|. +....++..+..+|..
T Consensus 84 i~~d~~VVvyc~~~~-~~a~~~~~~l~~~G~~ 114 (281)
T PRK11493 84 VNQDKHLVVYDEGNL-FSAPRAWWMLRTFGVE 114 (281)
T ss_pred CCCCCEEEEECCCCC-chHHHHHHHHHHhcCC
Confidence 245679999998775 4333332333445654
No 200
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=49.68 E-value=31 Score=39.38 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=49.8
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE-cCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~v-e~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL 769 (998)
++++||.-..-... ...++.+.|.+ .++++.+ ..+.. ..+....+... ...+.+++|+||.+|| |+++
T Consensus 25 ~kvlivtd~~~~~~-~~~~i~~~L~~-~~~~~~i~~~~~~----~~p~~~~v~~~----~~~~~~~~d~IIaiGG-Gsv~ 93 (332)
T cd08549 25 SKIMIVCGNNTYKV-AGKEIIERLES-NNFTKEVLERDSL----LIPDEYELGEV----LIKLDKDTEFLLGIGS-GTII 93 (332)
T ss_pred CcEEEEECCcHHHH-HHHHHHHHHHH-cCCeEEEEecCCC----CCCCHHHHHHH----HHHhhcCCCEEEEECC-cHHH
Confidence 68899987664322 23678888854 3554433 11111 00111000000 0112227899999999 9999
Q ss_pred HHHHhcc-CCCCcEEEEeC
Q 001898 770 HASNLFR-GAVPPVISFNL 787 (998)
Q Consensus 770 ~Aar~~~-~~~~PVLGINl 787 (998)
-+++.+. ...+|++-|.+
T Consensus 94 D~aK~iA~~~gip~I~VPT 112 (332)
T cd08549 94 DLVKFVSFKVGKPFISVPT 112 (332)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 9998764 34789999875
No 201
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=49.68 E-value=53 Score=39.58 Aligned_cols=74 Identities=8% Similarity=0.202 Sum_probs=46.2
Q ss_pred cCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHH------HHHHHHHH-HhcCCCCcEEEeCcCCC
Q 001898 286 KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTME------QVEKFASL-VSNSSKKPLYLHSKEGV 358 (998)
Q Consensus 286 lGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e------~v~~flel-L~d~~~~PVLVHCtAGK 358 (998)
..+..||++....... ........++|+|+......+.. .+..|+.. +....+.++||+|..||
T Consensus 317 ~~~~~vI~~s~~~~~~---------~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGk 387 (451)
T PF04179_consen 317 SEFDCVINCSESPTPK---------ESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGK 387 (451)
T ss_pred CCcCEEEEcCCCcccc---------cccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcc
Confidence 4788999997653110 11235688999999865544432 23334432 22224679999999999
Q ss_pred ChHHHHHHHH
Q 001898 359 WRTYAMVSRW 368 (998)
Q Consensus 359 DRTG~vvaLl 368 (998)
|..-.+++.+
T Consensus 388 DlSVgVaLaI 397 (451)
T PF04179_consen 388 DLSVGVALAI 397 (451)
T ss_pred hHHHHHHHHH
Confidence 9976664333
No 202
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=49.31 E-value=41 Score=29.26 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=19.8
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcC
Q 001898 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMA 373 (998)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG~vvaLll~llG 373 (998)
..+.+|+++|..|. |+..++..+.. +|
T Consensus 48 ~~~~~vv~~c~~~~-~a~~~~~~l~~-~G 74 (89)
T cd00158 48 DKDKPIVVYCRSGN-RSARAAKLLRK-AG 74 (89)
T ss_pred CCCCeEEEEeCCCc-hHHHHHHHHHH-hC
Confidence 45679999999987 77776655554 45
No 203
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=49.22 E-value=18 Score=42.57 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=42.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTlL 769 (998)
++++||.-..-.......++.+.|.+ .|+++.+-..+. ..+....+... .+. ...++|+||.+|| |.++
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GSvi 93 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEA-AGINFEVYDDVR----VEPTDESFKDA----IAFAKKGQFDAFVAVGG-GSVI 93 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH-cCCcEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccHH
Confidence 78999987663333456778888854 466655422211 01110000000 000 1346899999999 9999
Q ss_pred HHHHhc
Q 001898 770 HASNLF 775 (998)
Q Consensus 770 ~Aar~~ 775 (998)
-+++.+
T Consensus 94 D~AKai 99 (414)
T cd08190 94 DTAKAA 99 (414)
T ss_pred HHHHHH
Confidence 887654
No 204
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=48.82 E-value=72 Score=36.31 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=50.2
Q ss_pred CHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCc-EEEEEecCC-----CCCCCHHHHHHHHHHHhcCCCCc
Q 001898 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKV-ELIKIPVEV-----RTAPTMEQVEKFASLVSNSSKKP 349 (998)
Q Consensus 276 T~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI-~yIhIPV~d-----~~~ps~e~v~~flelL~d~~~~P 349 (998)
+.+.++...+.+-+.|||.|+.+ +-.+-. .+.......-| --+++|..+ ....+.+.++.|.+..--..+++
T Consensus 159 ~~~~~~~~~~~~~~~liDaR~~~-rf~G~~-~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~ 236 (285)
T COG2897 159 DATLVADALEVPAVLLIDARSPE-RFRGKE-PEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKE 236 (285)
T ss_pred CHHHHHHHhcCCCeEEEecCCHH-HhCCCC-CCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCC
Confidence 55667777777677799999985 111100 00000011111 112333211 11234566666665432245789
Q ss_pred EEEeCcCCCChHHHHHHHHHHH
Q 001898 350 LYLHSKEGVWRTYAMVSRWRQY 371 (998)
Q Consensus 350 VLVHCtAGKDRTG~vvaLll~l 371 (998)
|+++|..|. |+...+..+..+
T Consensus 237 vI~yCgsG~-~As~~~~al~~l 257 (285)
T COG2897 237 VIVYCGSGV-RASVTWLALAEL 257 (285)
T ss_pred EEEEcCCch-HHHHHHHHHHHh
Confidence 999999999 777776666553
No 205
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=48.79 E-value=1e+02 Score=33.19 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=57.8
Q ss_pred hhHHHHHhcCCcEEEEcCCCCc--CCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC-CcEEEeC
Q 001898 278 EGLKWLMEKGYKTIVDIRAERV--KDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHS 354 (998)
Q Consensus 278 eDl~~L~elGIKTVIDLRsee~--ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~-~PVLVHC 354 (998)
+-++.+++.|++..+++-.... ..+.+.....+.+...|+..+.++-. ....+++++.++++.+.+..+ -|+-+||
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT-VGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 3466778889999999943321 11112122335567789999888754 345778888888877754333 6888888
Q ss_pred cCCCChHHHHHHHHHHHcCC
Q 001898 355 KEGVWRTYAMVSRWRQYMAR 374 (998)
Q Consensus 355 tAGKDRTG~vvaLll~llGV 374 (998)
+--. =.|++-++.....|+
T Consensus 198 Hn~~-gla~an~laA~~aG~ 216 (265)
T cd03174 198 HNTL-GLAVANSLAALEAGA 216 (265)
T ss_pred CCCC-ChHHHHHHHHHHcCC
Confidence 7766 233333333333454
No 206
>CHL00101 trpG anthranilate synthase component 2
Probab=47.16 E-value=17 Score=38.05 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=25.6
Q ss_pred CccEEEEEcCCchHHH-----HHHhccCCCCcEEEEeCCC
Q 001898 755 RVDFVACLGGDGVILH-----ASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 755 ~~DlVIvLGGDGTlL~-----Aar~~~~~~~PVLGINlG~ 789 (998)
.+|.||+.||.|..-. .........+|||||-+|.
T Consensus 43 ~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGIClG~ 82 (190)
T CHL00101 43 NIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGH 82 (190)
T ss_pred CCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEchhH
Confidence 5799999999998633 1222224579999999886
No 207
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=46.18 E-value=48 Score=40.67 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=49.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCC---CeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCch
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQE---KMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~---gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGT 767 (998)
-+|+||.|..+ ....-..+.+.|.+.. ++.|.+..-..+.+.. . ..+...++|.||+-||-|.
T Consensus 290 v~IalVGKY~~-~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~------------~-~~~~L~~~dGIiLpGG~G~ 355 (525)
T TIGR00337 290 VTIGIVGKYVE-LKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEE------------E-GAEFLKGVDGILVPGGFGE 355 (525)
T ss_pred cEEEEEeCCcC-CHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhh------------h-hhhhhcCCCEEEeCCCCCC
Confidence 58999999764 2222356777775432 2333332211111100 0 0122456899999999764
Q ss_pred -----HHHHHHhccCCCCcEEEEeCCC
Q 001898 768 -----ILHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 768 -----lL~Aar~~~~~~~PVLGINlG~ 789 (998)
.+.+++.+...++|+|||-+|.
T Consensus 356 ~~~~g~i~ai~~a~e~~iP~LGIClG~ 382 (525)
T TIGR00337 356 RGVEGKILAIKYARENNIPFLGICLGM 382 (525)
T ss_pred hhhcChHHHHHHHHHcCCCEEEEcHHH
Confidence 4456777666789999998873
No 208
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=46.02 E-value=1.5e+02 Score=27.99 Aligned_cols=90 Identities=13% Similarity=0.239 Sum_probs=56.6
Q ss_pred CEEEEEecCChhHHHH-HHHHHHHHhcCCCeEEEEcCC-hhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH
Q 001898 691 RTVLVLKKPGPALMEE-AKEVASFLYHQEKMNILVEPD-VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~-a~~l~~~L~~~~gi~V~ve~~-~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTl 768 (998)
++|++++-.+-..... +.++-++|.+ +|+++-++.. +.+ + +...+++|+||+-. +
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~~~~e-~-----------------~~~~~~~D~iv~t~-~--- 59 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVNE-I-----------------ETYMDGVHLICTTA-R--- 59 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecHHH-H-----------------hhhcCCCCEEEECC-c---
Confidence 4799999999755554 5778888754 5787666542 111 1 11225679886633 1
Q ss_pred HHHHHhccCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcc
Q 001898 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYG 811 (998)
Q Consensus 769 L~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel~~~L~~il~G 811 (998)
+ ...+ .++|++-+ ++||+.++.+++++.+.+.++|
T Consensus 60 ~--~~~~--~~ip~~~~----~~llt~~~~~~~~e~i~~~l~~ 94 (94)
T PRK10310 60 V--DRSF--GDIPLVHG----MPFVSGVGIEALQNKILTILQG 94 (94)
T ss_pred c--cccc--CCCCEEEE----eecccccCHHHHHHHHHHHHcC
Confidence 1 1111 14775432 3699999999999988888765
No 209
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=45.67 E-value=30 Score=39.46 Aligned_cols=99 Identities=19% Similarity=0.142 Sum_probs=53.8
Q ss_pred hhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEe-cCC-CCCC------CHHH---------------
Q 001898 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP-VEV-RTAP------TMEQ--------------- 334 (998)
Q Consensus 278 eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIP-V~d-~~~p------s~e~--------------- 334 (998)
.+++.+++.|.+||||..+...-. .+...++..+.-|++.|.-= +.- ...| +.++
T Consensus 42 ~El~~~k~~Gg~tiVd~T~~g~GR--d~~~l~~is~~tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~Gidg 119 (308)
T PF02126_consen 42 AELKEFKAAGGRTIVDATPIGLGR--DVEALREISRRTGVNIIASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDG 119 (308)
T ss_dssp HHHHHHHHTTEEEEEE--SGGGTB---HHHHHHHHHHHT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STT
T ss_pred HHHHHHHHcCCCEEEecCCcccCc--CHHHHHHHHHHhCCeEEEeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 467788899999999998764211 22234566677788776522 110 0011 0111
Q ss_pred -----------------------HHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHH
Q 001898 335 -----------------------VEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQI 379 (998)
Q Consensus 335 -----------------------v~~flelL~d~~~~PVLVHCtAGKDRTG~vvaLll~llGVs~ddI 379 (998)
+.+.........+-||.+||..|. |.|.-.+-++...|++.+.+
T Consensus 120 T~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~-~~~~e~~~il~e~Gv~~~rv 186 (308)
T PF02126_consen 120 TGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGT-RMGLEQLDILEEEGVDPSRV 186 (308)
T ss_dssp SSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTG-TCHHHHHHHHHHTT--GGGE
T ss_pred CccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCC-cCHHHHHHHHHHcCCChhHe
Confidence 111111111234679999999998 67877766666789988766
No 210
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=45.44 E-value=75 Score=39.67 Aligned_cols=44 Identities=7% Similarity=-0.035 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 330 PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 330 ps~e~v~~flelL~d~~~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
.+.+.+.++++-+--..+.||++||..|. |++.++..++ .+|.+
T Consensus 206 k~~~el~~~~~~~Gi~~~~~VVvYC~sG~-rAa~~~~~L~-~lG~~ 249 (610)
T PRK09629 206 RIRQDMPEILRDLGITPDKEVITHCQTHH-RSGFTYLVAK-ALGYP 249 (610)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEECCCCh-HHHHHHHHHH-HcCCC
Confidence 44566666655432245679999999997 8887765554 45664
No 211
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=44.96 E-value=34 Score=36.27 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=25.2
Q ss_pred CccEEEEEcCCchHH------HHHHhccCCCCcEEEEeCCC
Q 001898 755 RVDFVACLGGDGVIL------HASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 755 ~~DlVIvLGGDGTlL------~Aar~~~~~~~PVLGINlG~ 789 (998)
++|.||..||-|..- ...+.+. ..+|||||-+|.
T Consensus 43 ~~d~iIlsgGP~~p~~~~~~~~~i~~~~-~~~PvLGIClG~ 82 (195)
T PRK07649 43 KPDFLMISPGPCSPNEAGISMEVIRYFA-GKIPIFGVCLGH 82 (195)
T ss_pred CCCEEEECCCCCChHhCCCchHHHHHhc-CCCCEEEEcHHH
Confidence 579999999998753 3333333 468999998885
No 212
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=44.88 E-value=38 Score=38.76 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=48.8
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTlL 769 (998)
++++||.-..-. .....++.+.|. ..++.+.+-... +....+... .+. ...++|+||.+|| |+++
T Consensus 24 ~~~liv~d~~~~-~~~~~~l~~~L~-~~~~~~~~~~~~-------p~~~~v~~~----~~~~~~~~~D~iIavGG-Gs~~ 89 (347)
T cd08172 24 KRPLIVTGPRSW-AAAKPYLPESLA-AGEAFVLRYDGE-------CSEENIERL----AAQAKENGADVIIGIGG-GKVL 89 (347)
T ss_pred CeEEEEECHHHH-HHHHHHHHHHHh-cCeEEEEEeCCC-------CCHHHHHHH----HHHHHhcCCCEEEEeCC-cHHH
Confidence 688888865532 234566777773 345554432221 110000000 011 1246899999999 9999
Q ss_pred HHHHhccC-CCCcEEEEeC
Q 001898 770 HASNLFRG-AVPPVISFNL 787 (998)
Q Consensus 770 ~Aar~~~~-~~~PVLGINl 787 (998)
-+++.+.. ..+|++-|.+
T Consensus 90 D~aK~ia~~~~~p~i~VPT 108 (347)
T cd08172 90 DTAKAVADRLGVPVITVPT 108 (347)
T ss_pred HHHHHHHHHhCCCEEEecC
Confidence 99997753 4689999875
No 213
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=44.77 E-value=58 Score=37.47 Aligned_cols=82 Identities=15% Similarity=0.260 Sum_probs=47.2
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCCh-hhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV-HDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~-~~~~~~~~~~~~~~~~~~~~~~dl-~~~~DlVIvLGGDGTl 768 (998)
++++||.-..-... ...++.+.|.+.....+++.++- .+.+.. .. +.+ ..++|+||.+|| |++
T Consensus 35 ~~~livtd~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~t~~~v~~---------~~----~~~~~~~~d~IIaiGG-Gsv 99 (350)
T PRK00843 35 GRALIVTGPTTKKI-AGDRVEENLEDAGDVEVVIVDEATMEEVEK---------VE----EKAKDVNAGFLIGVGG-GKV 99 (350)
T ss_pred CeEEEEECCcHHHH-HHHHHHHHHHhcCCeeEEeCCCCCHHHHHH---------HH----HHhhccCCCEEEEeCC-chH
Confidence 68899987764222 23556666643322333333221 111100 00 011 235799999999 999
Q ss_pred HHHHHhcc-CCCCcEEEEeC
Q 001898 769 LHASNLFR-GAVPPVISFNL 787 (998)
Q Consensus 769 L~Aar~~~-~~~~PVLGINl 787 (998)
+-+++.+. ...+|++-|.+
T Consensus 100 ~D~ak~vA~~rgip~I~IPT 119 (350)
T PRK00843 100 IDVAKLAAYRLGIPFISVPT 119 (350)
T ss_pred HHHHHHHHHhcCCCEEEeCC
Confidence 99998764 34789988875
No 214
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=44.53 E-value=18 Score=45.97 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=37.3
Q ss_pred CCccEEEEEcCCchHHHHHHhcc----------------------CCCCcEEEEeC-------C---CCcccCCCCcccH
Q 001898 754 ERVDFVACLGGDGVILHASNLFR----------------------GAVPPVISFNL-------G---SLGFLTSHPFEDY 801 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~----------------------~~~~PVLGINl-------G---~LGFLt~~~~eel 801 (998)
.++|.+|++|||||+-.|..+.. ...+||+||-- | ++||-|.++ .+
T Consensus 93 ~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiGfdTA~~--~i 170 (745)
T TIGR02478 93 RGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALH--RI 170 (745)
T ss_pred hCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcCCCCHHHHHH--HH
Confidence 47899999999999987764321 23789999943 3 678888643 34
Q ss_pred HHHHHHHH
Q 001898 802 RQDLRQVI 809 (998)
Q Consensus 802 ~~~L~~il 809 (998)
-++++.+.
T Consensus 171 ~~aid~i~ 178 (745)
T TIGR02478 171 CEAIDAIS 178 (745)
T ss_pred HHHHHHHH
Confidence 45555553
No 215
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=44.30 E-value=50 Score=36.46 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH-------------------
Q 001898 708 KEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI------------------- 768 (998)
Q Consensus 708 ~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTl------------------- 768 (998)
...++.+.+..++.|++.....+. ....++.+.+|-+|..||...+
T Consensus 29 ~~y~~~i~~aGg~pv~lp~~~~~~---------------~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD 93 (254)
T PRK11366 29 EKYLNAIIHAGGLPIALPHALAEP---------------SLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRD 93 (254)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCH---------------HHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHH
Confidence 445566666678888876332100 0012233458888888873222
Q ss_pred ---HHHHHhccCCCCcEEEEeCCC
Q 001898 769 ---LHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 769 ---L~Aar~~~~~~~PVLGINlG~ 789 (998)
+...+.+...++|||||-.|.
T Consensus 94 ~~e~~li~~a~~~~~PILGICrG~ 117 (254)
T PRK11366 94 LLSMALINAALERRIPIFAICRGL 117 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEECHhH
Confidence 233444445679999998885
No 216
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=44.07 E-value=22 Score=42.06 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=42.0
Q ss_pred cCCCEEEEEecCCh---hHHHHHHHHHHHHhcC-CCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEc
Q 001898 688 TTPRTVLVLKKPGP---ALMEEAKEVASFLYHQ-EKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLG 763 (998)
Q Consensus 688 ~~pk~VlIv~K~~~---~~~~~a~~l~~~L~~~-~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLG 763 (998)
.+||+++|+..|.. ......+.+..++... -...|+|.+..-..+.- .++...++ ...+|-||++|
T Consensus 156 ~RPknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTErAnhA~d~---------~~ei~~~~-~~~yDGiv~VG 225 (516)
T KOG1115|consen 156 ERPKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTERANHAFDV---------MAEIQNKE-LHTYDGIVAVG 225 (516)
T ss_pred cCCccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEccccchhhh---------hhhCCHhh-hhhcccEEEec
Confidence 47899999988753 2344555555554222 24567776654322110 01111122 34689999999
Q ss_pred CCchHHHHH
Q 001898 764 GDGVILHAS 772 (998)
Q Consensus 764 GDGTlL~Aa 772 (998)
|||-|=-..
T Consensus 226 GDG~FnEiL 234 (516)
T KOG1115|consen 226 GDGFFNEIL 234 (516)
T ss_pred CchhHHHHH
Confidence 999764433
No 217
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=44.04 E-value=62 Score=39.80 Aligned_cols=64 Identities=33% Similarity=0.461 Sum_probs=34.5
Q ss_pred EEEEEcCCchH---HHHHHhccCC-CCcE--EEEeCC-----CC---cccCCCCcccHHHHHHHHHccCCCCCceeeeee
Q 001898 758 FVACLGGDGVI---LHASNLFRGA-VPPV--ISFNLG-----SL---GFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLR 823 (998)
Q Consensus 758 lVIvLGGDGTl---L~Aar~~~~~-~~PV--LGINlG-----~L---GFLt~~~~eel~~~L~~il~G~~~i~~~~i~~R 823 (998)
-|++-|||||+ |.+...+.-. .+|| |...+| +| |-+++-. +-+.|..+.+|. ..-..|
T Consensus 419 RILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgytDEP---vSkil~~ve~gt-----vVqLDR 490 (1004)
T KOG0782|consen 419 RILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYTDEP---VSKILQAVEHGT-----VVQLDR 490 (1004)
T ss_pred EEEEecCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcCcch---HHHHHHHHhcCc-----EEeeee
Confidence 36688999996 5555444432 3444 333333 23 4445433 445566677775 223456
Q ss_pred eEEEEE
Q 001898 824 MRLCCE 829 (998)
Q Consensus 824 ~rL~~~ 829 (998)
-+|.++
T Consensus 491 W~lhvE 496 (1004)
T KOG0782|consen 491 WRLHVE 496 (1004)
T ss_pred eeeccc
Confidence 777654
No 218
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=43.46 E-value=13 Score=48.47 Aligned_cols=93 Identities=22% Similarity=0.197 Sum_probs=56.0
Q ss_pred HhhcCCCcccee----eeeccCCCCCCCcccceeechhh--HHHhhc---cCCccccc----ccccccccccccc-----
Q 001898 113 DTLCNPLTGECT----VSYEFTPEEKPLLEDKIVSVLGC--MLSLLN---KGREDVLS----GRSSIMNAYRVAD----- 174 (998)
Q Consensus 113 ~~~~~~~~~ec~----v~~~~~~~~~~~led~ii~~~~~--~~~~ln---~g~~~v~s----~~~~~~~~f~~~~----- 174 (998)
.+||=+-+|+|. --|-|+.|.-.|-.....+.|.. -+..+| +||.=|-+ ||. +-|.+-|
T Consensus 680 Rtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRT---G~fi~iDaml~~ 756 (1087)
T KOG4228|consen 680 RTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRT---GCFIVIDAMLDR 756 (1087)
T ss_pred EeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCc---ceEEEeHHHHHH
Confidence 478888889998 45888999888888888888877 344444 57762221 121 2233211
Q ss_pred -----cccccccCCccccchhhhhhhhhH---HHHHHHhccC
Q 001898 175 -----ISMTEDQLPPLAIFRSEMKRCCES---MHIALENYLT 208 (998)
Q Consensus 175 -----~~~~~~~~p~l~l~r~~~~~~~~~---~~~~l~~yl~ 208 (998)
.-+.-++.+.|.--|-.|+.+=+. +|++|..+..
T Consensus 757 ~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~ 798 (1087)
T KOG4228|consen 757 LECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEACL 798 (1087)
T ss_pred HHhhCccceechhHHHHhccccccccHHHHHHHHHHHHHHHh
Confidence 112224445677777777776665 4666655543
No 219
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=43.32 E-value=21 Score=47.65 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=26.8
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEe
Q 001898 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 786 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN 786 (998)
-+.|.+|++|||||+-.|+.+.. +..++|+||-
T Consensus 195 l~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIP 232 (1328)
T PTZ00468 195 LKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCP 232 (1328)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEe
Confidence 36899999999999988877543 3458999994
No 220
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=43.08 E-value=30 Score=39.83 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=38.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~ 770 (998)
++++||..+.-.......++.+.|... ...++ ..+. ..+....+...... ..+...++|+||.||| |+++-
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~-~~~~~--~~v~----~~pt~~~v~~~~~~-~~~~~~~~D~IIaiGG-GSviD 94 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGGR-LAALI--DDVA----PNPDVAQLDGLYAR-LWGDEGACDLVIALGG-GSVID 94 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhccC-cEEEe--CCCC----CCcCHHHHHHHHHH-HHhcCCCCCEEEEeCC-ccHHH
Confidence 789999865432234556777777432 23332 1110 00100000000000 0011134999999999 99999
Q ss_pred HHHhc
Q 001898 771 ASNLF 775 (998)
Q Consensus 771 Aar~~ 775 (998)
+++.+
T Consensus 95 ~aK~i 99 (355)
T TIGR03405 95 TAKVL 99 (355)
T ss_pred HHHHH
Confidence 88753
No 221
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=42.00 E-value=1.6e+02 Score=32.37 Aligned_cols=81 Identities=10% Similarity=0.042 Sum_probs=53.0
Q ss_pred HhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCC-cEEEeCc
Q 001898 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK-PLYLHSK 355 (998)
Q Consensus 277 ~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~-PVLVHCt 355 (998)
.+-++..++.|++..+++-......+.+.....+.+...|+..+.++=. ....+++++.++++.+....+. |+-+||+
T Consensus 115 ~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 115 EQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDS-AGAMLPDDVRERVRALREALDPTPVGFHGH 193 (263)
T ss_pred HHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCC-CCCcCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 4457778888999999983332111212222234556678988888643 4566788888888877544444 8999988
Q ss_pred CCC
Q 001898 356 EGV 358 (998)
Q Consensus 356 AGK 358 (998)
--.
T Consensus 194 n~~ 196 (263)
T cd07943 194 NNL 196 (263)
T ss_pred CCc
Confidence 766
No 222
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=41.63 E-value=50 Score=38.33 Aligned_cols=87 Identities=11% Similarity=0.165 Sum_probs=48.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeE--EEEcCChhhHhhcCCCCccceeeeccCcccc-cCCcc---EEEEEc
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMN--ILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVD---FVACLG 763 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~--V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl-~~~~D---lVIvLG 763 (998)
.++++||.-..-... ...++.+.|.+. +++ +++-+.... .+.+..+.... ..+ ..++| +||.+|
T Consensus 23 ~~rvlvVtd~~v~~~-~~~~l~~~L~~~-g~~~~~~~~~~~e~----~k~~~~v~~~~----~~~~~~~~dr~~~IIAvG 92 (355)
T cd08197 23 ADKYLLVTDSNVEDL-YGHRLLEYLREA-GAPVELLSVPSGEE----HKTLSTLSDLV----ERALALGATRRSVIVALG 92 (355)
T ss_pred CCeEEEEECccHHHH-HHHHHHHHHHhc-CCceEEEEeCCCCC----CCCHHHHHHHH----HHHHHcCCCCCcEEEEEC
Confidence 378999987664322 557788888643 443 332111100 00000000000 001 12444 999999
Q ss_pred CCchHHHHHHhcc---CCCCcEEEEeC
Q 001898 764 GDGVILHASNLFR---GAVPPVISFNL 787 (998)
Q Consensus 764 GDGTlL~Aar~~~---~~~~PVLGINl 787 (998)
| |+++-+++.++ ..++|++-|.+
T Consensus 93 G-Gsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 93 G-GVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred C-cHHHHHHHHHHHHhccCCCEEEecC
Confidence 9 99999998764 24689998887
No 223
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=41.52 E-value=28 Score=41.95 Aligned_cols=19 Identities=32% Similarity=0.113 Sum_probs=15.4
Q ss_pred EEeCcCCCChHHHH-HHHHH
Q 001898 351 YLHSKEGVWRTYAM-VSRWR 369 (998)
Q Consensus 351 LVHCtAGKDRTG~v-vaLll 369 (998)
.+.|.+||||||++ +.+-+
T Consensus 460 ~wNCkSGKDRTGmmD~eiKr 479 (564)
T PRK15378 460 AWNCKSGKDRTGMMDSEIKR 479 (564)
T ss_pred eeccCCCCccccchHHHHHH
Confidence 68999999999999 44433
No 224
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=41.22 E-value=88 Score=33.20 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=54.4
Q ss_pred EEEEEecCC----hhHHHHH-HHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCc
Q 001898 692 TVLVLKKPG----PALMEEA-KEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (998)
Q Consensus 692 ~VlIv~K~~----~~~~~~a-~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDG 766 (998)
+||||.+.. ....+.+ ..+...|.+..+++|-+..+... + ..+..+.+|+||.....|
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~-~----------------~~~~L~~~Dvvv~~~~~~ 63 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDD-L----------------TPENLKGYDVVVFYNTGG 63 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGC-T----------------SHHCHCT-SEEEEE-SSC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCccc-C----------------ChhHhcCCCEEEEECCCC
Confidence 689998883 2223334 44555554367899887666321 1 012246899999999888
Q ss_pred hH-----HHHHHhccCCCCcEEEEe-CCCCcccCCCCcccHHHHHHHHHccCC
Q 001898 767 VI-----LHASNLFRGAVPPVISFN-LGSLGFLTSHPFEDYRQDLRQVIYGNN 813 (998)
Q Consensus 767 Tl-----L~Aar~~~~~~~PVLGIN-lG~LGFLt~~~~eel~~~L~~il~G~~ 813 (998)
+- ..+.+.+...+.+++|++ .+...|- +. ....+++-|.+
T Consensus 64 ~~l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~---~~----~~~~~l~Gg~f 109 (217)
T PF06283_consen 64 DELTDEQRAALRDYVENGGGLVGLHGAATDSFP---DW----PEYNELLGGYF 109 (217)
T ss_dssp CGS-HHHHHHHHHHHHTT-EEEEEGGGGGCCHT---T-----HHHHHHHS--S
T ss_pred CcCCHHHHHHHHHHHHcCCCEEEEcccccccch---hH----HHHHHeeCccc
Confidence 53 334455556789999999 5555563 22 23344665654
No 225
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=40.86 E-value=9.1 Score=46.34 Aligned_cols=20 Identities=20% Similarity=-0.027 Sum_probs=0.0
Q ss_pred CCCcEEEeCcCCCChHHHHH
Q 001898 346 SKKPLYLHSKEGVWRTYAMV 365 (998)
Q Consensus 346 ~~~PVLVHCtAGKDRTG~vv 365 (998)
.+....+-|.+||||||++-
T Consensus 452 iGavp~~NCKSGKDRTG~lD 471 (559)
T PF05925_consen 452 IGAVPCWNCKSGKDRTGMLD 471 (559)
T ss_dssp --------------------
T ss_pred hCCeeeccCccCCccccccH
Confidence 34567899999999999993
No 226
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=40.57 E-value=44 Score=43.12 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=43.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhc-CCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCch
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYH-QEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGV 767 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~-~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGT 767 (998)
.++++||.-..-.......++.+.|.. ..++.+.+-..+.. .+....+... ... ...++|+||.+|| |+
T Consensus 480 ~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~----np~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 550 (862)
T PRK13805 480 KKRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEP----DPTLSTVRKG----AELMRSFKPDTIIALGG-GS 550 (862)
T ss_pred CCEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-ch
Confidence 479999986543333356678888752 34666554332210 0110000000 000 1247899999999 99
Q ss_pred HHHHHHhc
Q 001898 768 ILHASNLF 775 (998)
Q Consensus 768 lL~Aar~~ 775 (998)
.+-+++.+
T Consensus 551 viD~AK~i 558 (862)
T PRK13805 551 PMDAAKIM 558 (862)
T ss_pred HHHHHHHH
Confidence 99988765
No 227
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=40.44 E-value=60 Score=37.67 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=49.9
Q ss_pred cCCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EcCChhhHhhcCCCCccceeeecc-CcccccCCccEEEEEcC
Q 001898 688 TTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGG 764 (998)
Q Consensus 688 ~~pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~--ve~~~~~~~~~~~~~~~~~~~~~~-~~~dl~~~~DlVIvLGG 764 (998)
..+++++||.-..-.. ....++.+.|.+ .++++. +-+.... .+.+..+...... .......++|+||.+||
T Consensus 24 ~~~~~~lvVtd~~v~~-~~~~~v~~~l~~-~g~~~~~~v~~~~e~----~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG 97 (354)
T cd08199 24 EGSGRRFVVVDQNVDK-LYGKKLREYFAH-HNIPLTILVLRAGEA----AKTMDTVLKIVDALDAFGISRRREPVLAIGG 97 (354)
T ss_pred cCCCeEEEEECccHHH-HHHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 3568999998554321 134678888854 345433 2121100 0000000000000 00112234599999999
Q ss_pred CchHHHHHHhcc---CCCCcEEEEeC
Q 001898 765 DGVILHASNLFR---GAVPPVISFNL 787 (998)
Q Consensus 765 DGTlL~Aar~~~---~~~~PVLGINl 787 (998)
|+++-+++..+ ..++|++-|.+
T Consensus 98 -G~v~D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 98 -GVLTDVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred -cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 99999998765 55788877765
No 228
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=40.35 E-value=1.2e+02 Score=29.84 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=26.6
Q ss_pred CccEEEEEcCCch---------HHHHHHhccCCCCcEEEEeCCC
Q 001898 755 RVDFVACLGGDGV---------ILHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 755 ~~DlVIvLGGDGT---------lL~Aar~~~~~~~PVLGINlG~ 789 (998)
++|++|+.||.+. ++...+.+.....||.+|-.|.
T Consensus 62 ~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~ 105 (142)
T cd03132 62 LFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGS 105 (142)
T ss_pred hcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchH
Confidence 5899999999775 3445555556788999998774
No 229
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=39.29 E-value=2.1e+02 Score=31.46 Aligned_cols=94 Identities=6% Similarity=0.009 Sum_probs=54.9
Q ss_pred HHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCCC
Q 001898 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVW 359 (998)
Q Consensus 280 l~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHCtAGKD 359 (998)
++..++.|+...+++-......+.+.....+.+...|+..+.++=. ....+++++.+++..+.+..+-|+-+||+--.
T Consensus 116 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~- 193 (259)
T cd07939 116 VGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADT-VGILDPFTTYELIRRLRAATDLPLEFHAHNDL- 193 (259)
T ss_pred HHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC-
Confidence 4466778998888874432111212122234456678988888754 45567888888777665443468888887666
Q ss_pred hHHHHHHHHHHHcCCC
Q 001898 360 RTYAMVSRWRQYMARC 375 (998)
Q Consensus 360 RTG~vvaLll~llGVs 375 (998)
-.|++-++.....|++
T Consensus 194 Gla~An~laAi~aG~~ 209 (259)
T cd07939 194 GLATANTLAAVRAGAT 209 (259)
T ss_pred ChHHHHHHHHHHhCCC
Confidence 3344433332334653
No 230
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=38.84 E-value=1e+02 Score=31.99 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=30.2
Q ss_pred CCccEEEEEcCCc---------hHHHHHHhccCCCCcEEEEeCCCCc
Q 001898 754 ERVDFVACLGGDG---------VILHASNLFRGAVPPVISFNLGSLG 791 (998)
Q Consensus 754 ~~~DlVIvLGGDG---------TlL~Aar~~~~~~~PVLGINlG~LG 791 (998)
++.|+|++.||.+ .++...+.+...+.+|.+|-.|..-
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ 111 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPAT 111 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHH
Confidence 4689999999964 2666777777778999999999854
No 231
>PRK06490 glutamine amidotransferase; Provisional
Probab=38.69 E-value=61 Score=35.56 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=25.7
Q ss_pred CCccEEEEEcCCchH------H----HHHHhccCCCCcEEEEeCCC
Q 001898 754 ERVDFVACLGGDGVI------L----HASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 754 ~~~DlVIvLGGDGTl------L----~Aar~~~~~~~PVLGINlG~ 789 (998)
+++|.+|+.||-++. + ...+.+....+|||||-+|+
T Consensus 51 ~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 51 EDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred cccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 468999999998763 2 22333334578999999886
No 232
>PRK09875 putative hydrolase; Provisional
Probab=38.49 E-value=1.5e+02 Score=33.68 Aligned_cols=44 Identities=9% Similarity=0.238 Sum_probs=28.4
Q ss_pred CHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEE
Q 001898 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIK 321 (998)
Q Consensus 276 T~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIh 321 (998)
..+++..+++.|.+||||..+...-. .+...++..+.-|++.|-
T Consensus 36 ~~~el~~~~~~Gg~tiVd~T~~g~GR--d~~~l~~is~~tgv~Iv~ 79 (292)
T PRK09875 36 ICQEMNDLMTRGVRNVIEMTNRYMGR--NAQFMLDVMRETGINVVA 79 (292)
T ss_pred HHHHHHHHHHhCCCeEEecCCCccCc--CHHHHHHHHHHhCCcEEE
Confidence 34568889999999999998765211 222344555666766653
No 233
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=38.45 E-value=2e+02 Score=33.26 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=54.9
Q ss_pred CHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCC--CCcEEEe
Q 001898 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSS--KKPLYLH 353 (998)
Q Consensus 276 T~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~--~~PVLVH 353 (998)
..+-+++.+++|.++.+++-......+.+.....+.+...|...+.+.=. ....+++++.+.++.+.+.. +-|+-||
T Consensus 116 ~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 116 SEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDS-AGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred HHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccC-CCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 35667888899999999996543111112122335567788888877644 45667888888887775433 2689999
Q ss_pred CcCCC
Q 001898 354 SKEGV 358 (998)
Q Consensus 354 CtAGK 358 (998)
|+...
T Consensus 195 ~Hnnl 199 (333)
T TIGR03217 195 AHHNL 199 (333)
T ss_pred eCCCC
Confidence 98776
No 234
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=38.34 E-value=27 Score=44.52 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=36.5
Q ss_pred CCccEEEEEcCCchHHHHHHhc----------------------cCCCCcEEEEeC-------C---CCcccCCCCcccH
Q 001898 754 ERVDFVACLGGDGVILHASNLF----------------------RGAVPPVISFNL-------G---SLGFLTSHPFEDY 801 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~----------------------~~~~~PVLGINl-------G---~LGFLt~~~~eel 801 (998)
.++|.+|++|||||+-.|..+. ....++|+||-- | ++||-|..+ .+
T Consensus 96 ~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gTD~TiGfdTAl~--~i 173 (762)
T cd00764 96 RGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALH--RI 173 (762)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCCcCCCCHHHHHH--HH
Confidence 4799999999999998876431 123679999843 3 678888743 33
Q ss_pred HHHHHHHH
Q 001898 802 RQDLRQVI 809 (998)
Q Consensus 802 ~~~L~~il 809 (998)
-++++++.
T Consensus 174 ~eaId~i~ 181 (762)
T cd00764 174 CEVVDAIT 181 (762)
T ss_pred HHHHHHHH
Confidence 44555443
No 235
>PRK13566 anthranilate synthase; Provisional
Probab=37.97 E-value=1e+02 Score=39.37 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=49.2
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCch-
Q 001898 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV- 767 (998)
Q Consensus 689 ~pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGT- 767 (998)
..++|+||-.-.. ....+.+||.+ .|.+|.+-+.-... ..-+ ..++|.||+.||-|+
T Consensus 525 ~g~~IlvID~~ds----f~~~l~~~Lr~-~G~~v~vv~~~~~~----------------~~~~-~~~~DgVVLsgGpgsp 582 (720)
T PRK13566 525 EGKRVLLVDHEDS----FVHTLANYFRQ-TGAEVTTVRYGFAE----------------EMLD-RVNPDLVVLSPGPGRP 582 (720)
T ss_pred CCCEEEEEECCCc----hHHHHHHHHHH-CCCEEEEEECCCCh----------------hHhh-hcCCCEEEECCCCCCh
Confidence 3468888876632 24567888864 47776653321100 0001 135899999999885
Q ss_pred ----HHHHHHhccCCCCcEEEEeCCC
Q 001898 768 ----ILHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 768 ----lL~Aar~~~~~~~PVLGINlG~ 789 (998)
+....+.+...++|||||-+|.
T Consensus 583 ~d~~~~~lI~~a~~~~iPILGIClG~ 608 (720)
T PRK13566 583 SDFDCKATIDAALARNLPIFGVCLGL 608 (720)
T ss_pred hhCCcHHHHHHHHHCCCcEEEEehhH
Confidence 3444555555689999999985
No 236
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=37.55 E-value=21 Score=41.04 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=43.8
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~ 770 (998)
++++||.-+.-.......++.+.|.+ .++++.+-..+.. .+....+.... ..-...++|+||.+|| |+.+.
T Consensus 22 gr~lvVt~~~~~~~~~~~~v~~~L~~-~~i~~~~~~~~~~----~p~~~~v~~~~---~~~~~~~~D~IIaiGG-GS~~D 92 (366)
T PF00465_consen 22 GRVLVVTDPSLSKSGLVDRVLDALEE-AGIEVQVFDGVGP----NPTLEDVDEAA---EQARKFGADCIIAIGG-GSVMD 92 (366)
T ss_dssp TEEEEEEEHHHHHHTHHHHHHHHHHH-TTCEEEEEEEESS----S-BHHHHHHHH---HHHHHTTSSEEEEEES-HHHHH
T ss_pred CCEEEEECchHHhCccHHHHHHHHhh-CceEEEEEecCCC----CCcHHHHHHHH---HHHHhcCCCEEEEcCC-CCcCc
Confidence 59999986622333367888888854 5777654332210 00000000000 0001247899999999 99999
Q ss_pred HHHhcc
Q 001898 771 ASNLFR 776 (998)
Q Consensus 771 Aar~~~ 776 (998)
+++.+.
T Consensus 93 ~aK~va 98 (366)
T PF00465_consen 93 AAKAVA 98 (366)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998653
No 237
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=37.42 E-value=2e+02 Score=32.08 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=53.9
Q ss_pred hHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC--CcEEEeCcC
Q 001898 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK--KPLYLHSKE 356 (998)
Q Consensus 279 Dl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~--~PVLVHCtA 356 (998)
-++..+++|++..+++-......+.+.....+.+...|+..+.++=. ....+++++.++++.+....+ -|+-+||+-
T Consensus 114 ~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn 192 (266)
T cd07944 114 LIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS-FGSMYPEDIKRIISLLRSNLDKDIKLGFHAHN 192 (266)
T ss_pred HHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCCCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 35667778999999886543111111112234456678888888754 456678888888887754333 689999986
Q ss_pred CCChHHHHHHHH
Q 001898 357 GVWRTYAMVSRW 368 (998)
Q Consensus 357 GKDRTG~vvaLl 368 (998)
-. |+..+-.
T Consensus 193 ~~---Gla~AN~ 201 (266)
T cd07944 193 NL---QLALANT 201 (266)
T ss_pred Cc---cHHHHHH
Confidence 65 5554333
No 238
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=36.91 E-value=35 Score=39.60 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=41.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~DlVIvLGGDGTl 768 (998)
.++++||....-.......++.+.|.+ .++++.+-.++.. .+....+.. ..+. ...++|+||.+|| |..
T Consensus 28 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~~----~p~~~~v~~----~~~~~~~~~~d~IIaiGG-Gsv 97 (377)
T cd08188 28 AKKVLLVSDPGVIKAGWVDRVIESLEE-AGLEYVVFSDVSP----NPRDEEVMA----GAELYLENGCDVIIAVGG-GSP 97 (377)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEeCCCCC----CCCHHHHHH----HHHHHHhcCCCEEEEeCC-chH
Confidence 378999986543222245667777753 4555543222210 011000000 0001 1357899999999 999
Q ss_pred HHHHHhc
Q 001898 769 LHASNLF 775 (998)
Q Consensus 769 L~Aar~~ 775 (998)
+-+++.+
T Consensus 98 iD~AK~i 104 (377)
T cd08188 98 IDCAKGI 104 (377)
T ss_pred HHHHHHH
Confidence 9998654
No 239
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=33.91 E-value=11 Score=35.10 Aligned_cols=18 Identities=50% Similarity=1.053 Sum_probs=13.8
Q ss_pred CCCCCCcc----------CCCCCchhhh
Q 001898 77 DPSQLPWI----------GPVPGDIAEV 94 (998)
Q Consensus 77 ~~~~~~~~----------~~~~~~~~~~ 94 (998)
.+.||||| |-.||||.++
T Consensus 36 ~~~qLPkI~~~DPva~~lgak~GdvVkI 63 (80)
T COG2012 36 EPEQLPKIKASDPVAKALGAKPGDVVKI 63 (80)
T ss_pred CHHHCCcccccChhHHHccCCCCcEEEE
Confidence 35688886 7789998765
No 240
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=33.27 E-value=38 Score=35.01 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=25.9
Q ss_pred CccEEEEEcCCchH------HHHHHhccCCCCcEEEEeCCC
Q 001898 755 RVDFVACLGGDGVI------LHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 755 ~~DlVIvLGGDGTl------L~Aar~~~~~~~PVLGINlG~ 789 (998)
.+|.||..||.|.. +...+.+...++|||||-+|.
T Consensus 39 ~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~ 79 (178)
T cd01744 39 DPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGH 79 (178)
T ss_pred CCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHH
Confidence 57999999997653 334455555679999998874
No 241
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=32.69 E-value=2.7e+02 Score=32.28 Aligned_cols=82 Identities=12% Similarity=0.033 Sum_probs=54.3
Q ss_pred CHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCC--CCcEEEe
Q 001898 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSS--KKPLYLH 353 (998)
Q Consensus 276 T~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~--~~PVLVH 353 (998)
..+-+++.+++|+++.+++-......+.+.....+.+...|...+.+.=. ....+++++.++++.+.+.. +-|+-||
T Consensus 117 ~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 117 SEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDS-AGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 34557788889999999986553111112122334566788888777544 45667888888888775433 5688888
Q ss_pred CcCCC
Q 001898 354 SKEGV 358 (998)
Q Consensus 354 CtAGK 358 (998)
|+...
T Consensus 196 ~Hnnl 200 (337)
T PRK08195 196 GHNNL 200 (337)
T ss_pred eCCCc
Confidence 88766
No 242
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=32.15 E-value=67 Score=39.71 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=50.8
Q ss_pred cCCCEEEEEecCCh---hHHHHHHHHHHHHhcCCC--eEEEEcCCh--hhHhhcCCCCccceeeeccCcccccCCccEEE
Q 001898 688 TTPRTVLVLKKPGP---ALMEEAKEVASFLYHQEK--MNILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVA 760 (998)
Q Consensus 688 ~~pk~VlIv~K~~~---~~~~~a~~l~~~L~~~~g--i~V~ve~~~--~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVI 760 (998)
+.+++++|+..|.. .+.++.+..+.-|...-+ ++|.+...- |..+. . .....+.|-||
T Consensus 177 ~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~--------r-------t~dl~kyDgIv 241 (579)
T KOG1116|consen 177 KRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIV--------R-------TLDLGKYDGIV 241 (579)
T ss_pred CCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHH--------H-------hhhccccceEE
Confidence 35788888888763 466776655555543333 455544321 11111 0 11346789999
Q ss_pred EEcCCchHHHHHHh-ccC------CCCcEEEEeCC
Q 001898 761 CLGGDGVILHASNL-FRG------AVPPVISFNLG 788 (998)
Q Consensus 761 vLGGDGTlL~Aar~-~~~------~~~PVLGINlG 788 (998)
|+||||++--+..= +.+ ..+||-=|-+|
T Consensus 242 ~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~G 276 (579)
T KOG1116|consen 242 CVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCG 276 (579)
T ss_pred EecCCcCHHHhhhccccccchhhHhcCceeEeecC
Confidence 99999999888863 322 23566555555
No 243
>PRK05380 pyrG CTP synthetase; Validated
Probab=31.88 E-value=1e+02 Score=37.97 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=27.6
Q ss_pred ccCCccEEEEEcCCch-----HHHHHHhccCCCCcEEEEeCC
Q 001898 752 LHERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (998)
Q Consensus 752 l~~~~DlVIvLGGDGT-----lL~Aar~~~~~~~PVLGINlG 788 (998)
...++|-||+-||=|. .+.+++.+...++|+|||-+|
T Consensus 340 ~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 340 LLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred HhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 3467899999998542 455666666678999999887
No 244
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=30.60 E-value=3.5e+02 Score=31.78 Aligned_cols=79 Identities=6% Similarity=0.057 Sum_probs=51.7
Q ss_pred hHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCC
Q 001898 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (998)
Q Consensus 279 Dl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHCtAGK 358 (998)
-++..++.|++..++.-.....++.+.....+.+...|+..+.++=. ....+++++.++++.+.+..+-|+-+||+--.
T Consensus 121 ~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~ 199 (378)
T PRK11858 121 AVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDT-VGILDPFTMYELVKELVEAVDIPIEVHCHNDF 199 (378)
T ss_pred HHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 35567778999888863222112222222334566789999988854 45667888888887775444678999998766
No 245
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=30.36 E-value=69 Score=35.58 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 331 TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 331 s~e~v~~flelL~d~~~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
+.+.+++++...--..+.||+++|..|. |+..++..+. .+|..
T Consensus 215 ~~~~l~~~~~~~g~~~~~~ii~yC~~G~-~A~~~~~~l~-~~G~~ 257 (281)
T PRK11493 215 TTDELDAIFFGRGVSFDRPIIASCGSGV-TAAVVVLALA-TLDVP 257 (281)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCCC
Confidence 3455555544321134679999999999 8877755554 56775
No 246
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=30.33 E-value=2.3e+02 Score=33.51 Aligned_cols=60 Identities=25% Similarity=0.300 Sum_probs=42.8
Q ss_pred cccccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCC-------------CcccCC---CCcccHHHHHHHHHccC
Q 001898 749 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGS-------------LGFLTS---HPFEDYRQDLRQVIYGN 812 (998)
Q Consensus 749 ~~dl~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINlG~-------------LGFLt~---~~~eel~~~L~~il~G~ 812 (998)
...+...+|++|+-||=||+..+.+ .++|++.+-.+. .|.... .+.+.+.+++.+++...
T Consensus 294 ~~~~l~~ad~vI~hGG~gtt~eaL~----~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~ 369 (406)
T COG1819 294 QLELLPRADAVIHHGGAGTTSEALY----AGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADD 369 (406)
T ss_pred HHHHhhhcCEEEecCCcchHHHHHH----cCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCH
Confidence 3456789999999999999999885 368999886642 343333 45666777777777543
No 247
>PRK07567 glutamine amidotransferase; Provisional
Probab=30.21 E-value=41 Score=36.89 Aligned_cols=36 Identities=11% Similarity=-0.061 Sum_probs=25.1
Q ss_pred CCccEEEEEcCCchH------------------HHHHHhccCCCCcEEEEeCCC
Q 001898 754 ERVDFVACLGGDGVI------------------LHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 754 ~~~DlVIvLGGDGTl------------------L~Aar~~~~~~~PVLGINlG~ 789 (998)
+++|.||+.||-+.. ..+.+.+...++|||||-+|.
T Consensus 50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~ 103 (242)
T PRK07567 50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGV 103 (242)
T ss_pred hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhH
Confidence 468999999996532 112233335679999999886
No 248
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=29.82 E-value=2e+02 Score=29.04 Aligned_cols=34 Identities=6% Similarity=0.012 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHH
Q 001898 333 EQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWR 369 (998)
Q Consensus 333 e~v~~flelL~d~~~~PVLVHCtAGKDRTG~vvaLll 369 (998)
+.+...+.-+ ..+.|++++|..|. ++..++..+.
T Consensus 37 ~~l~~~l~~l--~~~~~vVv~c~~g~-~a~~aa~~L~ 70 (145)
T cd01535 37 AQLAQALEKL--PAAERYVLTCGSSL-LARFAAADLA 70 (145)
T ss_pred HHHHHHHHhc--CCCCCEEEEeCCCh-HHHHHHHHHH
Confidence 3444444333 34679999999975 6665554443
No 249
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=29.48 E-value=52 Score=37.43 Aligned_cols=102 Identities=17% Similarity=0.283 Sum_probs=69.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhcCCCccceeeeeccCCCCCCCcccceeechhhHHHhhccCCccccccccccccccccc
Q 001898 94 VEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVA 173 (998)
Q Consensus 94 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ec~v~~~~~~~~~~~led~ii~~~~~~~~~ln~g~~~v~s~~~~~~~~f~~~ 173 (998)
.|-+|++|....+-.. +..||-- .||.|+| -|.+-.++++|.+ =-...+|+.|.
T Consensus 148 ~del~~Lv~~va~~~~--a~~L~~s----------------Lgl~~k~---~d~V~~LI~~g~~---ieAv~fi~~f~-- 201 (290)
T PF07899_consen 148 EDELLKLVVSVARRKQ--APELCRS----------------LGLSDKM---PDIVEKLIKKGKQ---IEAVRFIYAFG-- 201 (290)
T ss_pred HHHHHHHHHHhcchHh--hHHHHHH----------------cCchhhh---HHHHHHHHHCCCc---cchHHHHHHHc--
Confidence 3667888887765554 5566642 3577776 4557788999888 44556677776
Q ss_pred ccccccccCCccccchhhhhhhhhHHHHHHHhccCCCCCchhHHHHHHHHhhh
Q 001898 174 DISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKN 226 (998)
Q Consensus 174 ~~~~~~~~~p~l~l~r~~~~~~~~~~~~~l~~yl~p~~~~~~~v~rkLqR~~~ 226 (998)
+.|++||.||.+.-+++..........+==++ ....-..-++|..++.
T Consensus 202 ----L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~-~a~~ea~~kel~aL~~ 249 (290)
T PF07899_consen 202 ----LVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS-EAQNEANEKELAALKS 249 (290)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHH
Confidence 47999999999999999888877666554333 2334445555666555
No 250
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.66 E-value=47 Score=37.98 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=27.8
Q ss_pred cccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCC
Q 001898 751 DLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG 788 (998)
Q Consensus 751 dl~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINlG 788 (998)
++.+..+++|++|-|=|.+- +..+.+.++||+||-=|
T Consensus 262 el~~~~~lvvTvGDDTT~va-gdIl~RfgipiiGItDg 298 (367)
T COG4069 262 ELIEGAGLVVTVGDDTTEVA-GDILYRFGIPIIGITDG 298 (367)
T ss_pred HhhccCceEEEEcCcchhHH-HHHHHhcCCcEEecccC
Confidence 34567789999998877664 55566789999998443
No 251
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=28.50 E-value=1.1e+02 Score=35.99 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=26.2
Q ss_pred CCccEEEEEcCCchHHHHHHhcc---CCCCcEEEEeC
Q 001898 754 ERVDFVACLGGDGVILHASNLFR---GAVPPVISFNL 787 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~---~~~~PVLGINl 787 (998)
++.|+||.||| |.++-++..++ ..++|++-|.+
T Consensus 98 ~r~~~IIalGG-G~v~D~ag~vA~~~~rGip~I~IPT 133 (369)
T cd08198 98 DRHSYVIAIGG-GAVLDAVGYAAATAHRGVRLIRIPT 133 (369)
T ss_pred CcCcEEEEECC-hHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34569999999 99999887664 45789888875
No 252
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=28.36 E-value=1.1e+02 Score=33.56 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=25.8
Q ss_pred cCCccEEEEEcCCch-----HHHHHHhccCCCCcEEEEeCCC
Q 001898 753 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 753 ~~~~DlVIvLGGDGT-----lL~Aar~~~~~~~PVLGINlG~ 789 (998)
...+|.||.-||-|+ .+.+.+.....++|+|||-+|.
T Consensus 53 l~~~dgivl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG~ 94 (235)
T cd01746 53 LKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGM 94 (235)
T ss_pred hccCCEEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhHH
Confidence 356899999998543 2334455445689999999874
No 253
>PRK09389 (R)-citramalate synthase; Provisional
Probab=28.28 E-value=3.4e+02 Score=33.13 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=51.4
Q ss_pred HHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCC
Q 001898 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (998)
Q Consensus 280 l~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHCtAGK 358 (998)
++.+++.|++..+++-.....++.+.....+.+...|...+.+|=. ....++.++..+++.+.+..+-|+=+||+--.
T Consensus 120 v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-vG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~ 197 (488)
T PRK09389 120 VEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDT-VGILTPEKTYELFKRLSELVKGPVSIHCHNDF 197 (488)
T ss_pred HHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCcCHHHHHHHHHHHHhhcCCeEEEEecCCc
Confidence 5667788999888874332122222222334556789999999865 45566777777777665444578999999766
No 254
>PRK10586 putative oxidoreductase; Provisional
Probab=27.99 E-value=64 Score=37.54 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=31.9
Q ss_pred CCccEEEEEcCCchHHHHHHhccC-CCCcEEEEeC--CCCcccCC
Q 001898 754 ERVDFVACLGGDGVILHASNLFRG-AVPPVISFNL--GSLGFLTS 795 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~-~~~PVLGINl--G~LGFLt~ 795 (998)
.++|+||.+|| |..+-+++.+.. ..+|++.|.+ |+=+..++
T Consensus 85 ~~~d~iiavGG-Gs~iD~aK~~a~~~~~p~i~vPT~a~t~s~~s~ 128 (362)
T PRK10586 85 DDRQVVIGVGG-GALLDTAKALARRLGLPFVAIPTIAATCAAWTP 128 (362)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHhhcCCCEEEEeCCccccccccC
Confidence 46899999999 999999998753 5789999986 44444443
No 255
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=27.75 E-value=3.8e+02 Score=29.66 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=47.8
Q ss_pred HHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC---CcEEEeCcC
Q 001898 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK---KPLYLHSKE 356 (998)
Q Consensus 280 l~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~---~PVLVHCtA 356 (998)
++..+++|++..+++-......+.+.....+.+...|+..+.++=. ....+++++..+++.+.+..+ -|+-+||+-
T Consensus 120 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn 198 (268)
T cd07940 120 VEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDT-VGYLTPEEFGELIKKLKENVPNIKVPISVHCHN 198 (268)
T ss_pred HHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCC-CCCCCHHHHHHHHHHHHHhCCCCceeEEEEecC
Confidence 4566778998887764332111112112234456678888877654 445678888888777754333 578888887
Q ss_pred CC
Q 001898 357 GV 358 (998)
Q Consensus 357 GK 358 (998)
-.
T Consensus 199 ~~ 200 (268)
T cd07940 199 DL 200 (268)
T ss_pred Cc
Confidence 66
No 256
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=27.41 E-value=27 Score=35.89 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=27.8
Q ss_pred cCCccEEEEEcCCch------HHHHHHhccCCCCcEEEEeCCC
Q 001898 753 HERVDFVACLGGDGV------ILHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 753 ~~~~DlVIvLGGDGT------lL~Aar~~~~~~~PVLGINlG~ 789 (998)
..++|.||+.||=|. .+.+.+.+....+|||||-+|.
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~ 82 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGH 82 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHH
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEEEEeehh
Confidence 467899999999554 3445566555789999998875
No 257
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=26.83 E-value=4.5e+02 Score=30.68 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=52.0
Q ss_pred hhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCC
Q 001898 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEG 357 (998)
Q Consensus 278 eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHCtAG 357 (998)
+-++..++.|++..+++-.....++.+.....+.+...|+..+.++=. ....+++++.++++.+.+..+-|+=+||+--
T Consensus 116 ~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd 194 (363)
T TIGR02090 116 EAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADT-VGVLTPQKMEELIKKLKENVKLPISVHCHND 194 (363)
T ss_pred HHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCC-CCccCHHHHHHHHHHHhcccCceEEEEecCC
Confidence 345567788999888874332112222222234456778998888755 4566788888888877544456888888876
Q ss_pred C
Q 001898 358 V 358 (998)
Q Consensus 358 K 358 (998)
.
T Consensus 195 ~ 195 (363)
T TIGR02090 195 F 195 (363)
T ss_pred C
Confidence 6
No 258
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=26.71 E-value=4.1e+02 Score=30.96 Aligned_cols=78 Identities=8% Similarity=0.101 Sum_probs=49.8
Q ss_pred HHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCC
Q 001898 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (998)
Q Consensus 280 l~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHCtAGK 358 (998)
++..++.|++..+++-.....++.+.....+.+...|+..+.++=. ....+++++.++++.+.+..+-|+=+||+--.
T Consensus 119 i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~ 196 (365)
T TIGR02660 119 VSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADT-VGILDPFSTYELVRALRQAVDLPLEMHAHNDL 196 (365)
T ss_pred HHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccc-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 5566778998777764332112222222334556689999888755 45567888888877775444568888888655
No 259
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=26.48 E-value=1.2e+02 Score=35.15 Aligned_cols=77 Identities=10% Similarity=0.126 Sum_probs=39.2
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 001898 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (998)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTlL~ 770 (998)
++++||.-+.-... ....+.+.|. +..+.+-+.... .+....+......-.+.-..+-|+||.+|| |.++-
T Consensus 20 ~r~lIVtD~~v~~l-~~~~l~~~L~---~~~~~~~~~~e~----~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~D 90 (346)
T cd08196 20 ENDVFIVDANVAEL-YRDRLDLPLD---AAPVIAIDATEE----NKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQD 90 (346)
T ss_pred CeEEEEECccHHHH-HHHHHHHHhc---CCeEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHH
Confidence 78899988875433 5677777774 233332222110 011000000000000000123389999999 99999
Q ss_pred HHHhcc
Q 001898 771 ASNLFR 776 (998)
Q Consensus 771 Aar~~~ 776 (998)
++...+
T Consensus 91 ~ak~vA 96 (346)
T cd08196 91 VTTFVA 96 (346)
T ss_pred HHHHHH
Confidence 887654
No 260
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=26.30 E-value=70 Score=33.57 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=25.1
Q ss_pred CccEEEEEcCCchHH------HHHHhccCCCCcEEEEeCCC
Q 001898 755 RVDFVACLGGDGVIL------HASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 755 ~~DlVIvLGGDGTlL------~Aar~~~~~~~PVLGINlG~ 789 (998)
+.|.+|+.||.|..- ...+.+ ...+|||||-+|.
T Consensus 43 ~~~~iilsgGp~~~~~~~~~~~~i~~~-~~~~PiLGIClG~ 82 (193)
T PRK08857 43 NPTHLVISPGPCTPNEAGISLQAIEHF-AGKLPILGVCLGH 82 (193)
T ss_pred CCCEEEEeCCCCChHHCcchHHHHHHh-cCCCCEEEEcHHH
Confidence 468999999998753 333443 3579999998885
No 261
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=26.22 E-value=1.4e+02 Score=33.50 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=28.8
Q ss_pred cCCccEEEEEcCCch-------HHHHHHhccCCCCcEEEEeCCC
Q 001898 753 HERVDFVACLGGDGV-------ILHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 753 ~~~~DlVIvLGGDGT-------lL~Aar~~~~~~~PVLGINlG~ 789 (998)
.+.+|++|+-||+|. ++...+.+.....+|.+|-.|.
T Consensus 73 ~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~ 116 (322)
T PRK09393 73 LDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGV 116 (322)
T ss_pred cCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHH
Confidence 357899999999774 6666666666778999998874
No 262
>PRK09065 glutamine amidotransferase; Provisional
Probab=25.98 E-value=56 Score=35.68 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=26.2
Q ss_pred CCccEEEEEcCCchH----------HHHHHhccCCCCcEEEEeCCC
Q 001898 754 ERVDFVACLGGDGVI----------LHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 754 ~~~DlVIvLGGDGTl----------L~Aar~~~~~~~PVLGINlG~ 789 (998)
.++|.||+.||-.+. +...+.+...++|||||-+|+
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~ 98 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH 98 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH
Confidence 468999999998762 233344444679999999886
No 263
>PRK08250 glutamine amidotransferase; Provisional
Probab=25.82 E-value=62 Score=35.33 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=25.1
Q ss_pred CCccEEEEEcCCchH---------------HHHHHhccCCCCcEEEEeCCC
Q 001898 754 ERVDFVACLGGDGVI---------------LHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 754 ~~~DlVIvLGGDGTl---------------L~Aar~~~~~~~PVLGINlG~ 789 (998)
+++|.+|+.||-.+. ....+.+...++||+||-.|.
T Consensus 44 ~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 94 (235)
T PRK08250 44 DGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGA 94 (235)
T ss_pred cccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhH
Confidence 468999999995441 223344445689999998775
No 264
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=25.81 E-value=34 Score=37.87 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=33.4
Q ss_pred CCccceeeeeccCCCCCCCcccceeechhh--HHHhhccCCccccccccccc----ccccc
Q 001898 118 PLTGECTVSYEFTPEEKPLLEDKIVSVLGC--MLSLLNKGREDVLSGRSSIM----NAYRV 172 (998)
Q Consensus 118 ~~~~ec~v~~~~~~~~~~~led~ii~~~~~--~~~~ln~g~~~v~s~~~~~~----~~f~~ 172 (998)
-.--+|+|= ..+|.+|.|||+-+. |+-+. =+|-+++| |||++
T Consensus 195 kId~~C~VL------TvhGs~D~IVPve~AkefAk~i-------~nH~L~iIEgADHnyt~ 242 (269)
T KOG4667|consen 195 KIDKQCRVL------TVHGSEDEIVPVEDAKEFAKII-------PNHKLEIIEGADHNYTG 242 (269)
T ss_pred CcCccCceE------EEeccCCceeechhHHHHHHhc-------cCCceEEecCCCcCccc
Confidence 366788882 579999999999998 55443 26889999 99998
No 265
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=25.22 E-value=1e+02 Score=36.11 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=25.9
Q ss_pred CccEEEEEcCCchH------HHHHHhccCCCCcEEEEeCCC
Q 001898 755 RVDFVACLGGDGVI------LHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 755 ~~DlVIvLGGDGTl------L~Aar~~~~~~~PVLGINlG~ 789 (998)
++|.||.-||.|.. +..++.+...++|||||-+|.
T Consensus 218 ~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~ 258 (360)
T PRK12564 218 NPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGH 258 (360)
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHH
Confidence 57999999997753 344555545579999998885
No 266
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=25.06 E-value=1e+02 Score=32.27 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCch-----------------------HHHHHHhccCCCCcEEEEeCCC
Q 001898 754 ERVDFVACLGGDGV-----------------------ILHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 754 ~~~DlVIvLGGDGT-----------------------lL~Aar~~~~~~~PVLGINlG~ 789 (998)
..+|.||.-||-+. .....+.+...++||+||-.|.
T Consensus 52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~ 110 (189)
T cd01745 52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGM 110 (189)
T ss_pred hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchH
Confidence 56899999999432 2344455545678999998874
No 267
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=23.96 E-value=6.7e+02 Score=31.62 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=54.6
Q ss_pred ceEEEcCC-C-----CHhhHHHHHhcCCcEEEE--cCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHH
Q 001898 267 VTFCRGGQ-V-----TEEGLKWLMEKGYKTIVD--IRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKF 338 (998)
Q Consensus 267 ~~LYRSgq-p-----T~eDl~~L~elGIKTVID--LRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~f 338 (998)
..++|-.. + ....++..++.|..+... +.........+.....+.+...|+..+.|.=. ....++.++.++
T Consensus 110 idv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDt-aG~l~P~~v~~l 188 (596)
T PRK14042 110 VDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDM-AGLLTPTVTVEL 188 (596)
T ss_pred CCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCc-ccCCCHHHHHHH
Confidence 35666663 2 234577788888887766 43322111112122334566788888777643 345577788777
Q ss_pred HHHHhcCCCCcEEEeCcCCC
Q 001898 339 ASLVSNSSKKPLYLHSKEGV 358 (998)
Q Consensus 339 lelL~d~~~~PVLVHCtAGK 358 (998)
++.+.+..+-|+-+||+.-.
T Consensus 189 v~alk~~~~ipi~~H~Hnt~ 208 (596)
T PRK14042 189 YAGLKQATGLPVHLHSHSTS 208 (596)
T ss_pred HHHHHhhcCCEEEEEeCCCC
Confidence 77765444578888887655
No 268
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.89 E-value=2.4e+02 Score=29.58 Aligned_cols=113 Identities=13% Similarity=0.262 Sum_probs=66.4
Q ss_pred eeeEEEecCCCCeeEEEEEEECCEEeeeEe-ecEeEEcCCCChhHHhhhcCCCCcCCCCCceeeEEeCCCCCC----CCC
Q 001898 845 LNEVVVDRGSNPYLSKIECYEHDRLITKVQ-GDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLS----FRP 919 (998)
Q Consensus 845 LNDVvI~Rg~~~~~~~i~V~IDge~v~~~r-gDGLIVSTPTGSTAYsLSAGGPIV~P~v~aillTPIcPHsLs----~RP 919 (998)
-+|+-|..+...++ + .|+.+|+.+.+.+ .||+..-|+-|-+=-=. .+=+|..++++-....|+.-. |--
T Consensus 29 ~~~v~~~~s~tGRi-R-qV~~~G~~~~t~Ra~DG~~tL~~~Ga~~L~~----~l~~P~~RVvV~~E~e~f~r~Gk~VFaK 102 (155)
T COG1370 29 PDDVKIVLSKTGRI-R-QVFVDGERIATVRANDGLFTLTIEGARRLHR----ALPFPRMRVVVSDEAEEFVRKGKSVFAK 102 (155)
T ss_pred cCCceEEEcCCCce-E-EEEECCEEEEEEEcCCceEEechhhhHHHHh----cCCCCceEEEeccccHHHHHhccchhhh
Confidence 35666653443433 2 4688999999999 99999888877654332 244677776666666664311 111
Q ss_pred eEeCCCCEEE-----EEEcCCCC--ccEEEEEcCccccccCCCCEEEEEee
Q 001898 920 VILPDSARLE-----LKIPDDAR--SNAWVSFDGKRRQQLSRGDSVRIFMS 963 (998)
Q Consensus 920 IVlp~~s~I~-----I~v~~~~r--~~~~vsiDG~~~~~L~~Gd~V~I~~S 963 (998)
.|+..+..|+ +.+..+.+ ....+.+.|.+..+++.|.-|.|+..
T Consensus 103 fVi~~D~~iR~~dEvlVVne~d~LlAvGra~ls~~E~~~~~~G~AVkVr~G 153 (155)
T COG1370 103 FVIDVDEEIRAGDEVLVVNEDDELLAVGRALLSGAEMREFERGMAVKVREG 153 (155)
T ss_pred heeccCcccCCCCeEEEECCCCcEEEeeeEeecHHHHhhccccEEEEEecC
Confidence 2222222221 12222211 12356788888888999999988764
No 269
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=23.67 E-value=55 Score=41.64 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=47.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH-
Q 001898 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI- 768 (998)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~gi~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~DlVIvLGGDGTl- 768 (998)
.++|+||-.-. . ....+.+||.+ .|+++.+-+.... .+..+ ..++|.||+.||-|+.
T Consensus 516 ~~~IlVID~gd-s---~~~~l~~~L~~-~G~~v~vv~~~~~----------------~~~~~-~~~~DgLILsgGPGsp~ 573 (717)
T TIGR01815 516 GRRILLVDHED-S---FVHTLANYLRQ-TGASVTTLRHSHA----------------EAAFD-ERRPDLVVLSPGPGRPA 573 (717)
T ss_pred CCEEEEEECCC-h---hHHHHHHHHHH-CCCeEEEEECCCC----------------hhhhh-hcCCCEEEEcCCCCCch
Confidence 46888886543 2 24567778754 4666654322100 00001 1358999999999985
Q ss_pred ----HHHHHhccCCCCcEEEEeCCC
Q 001898 769 ----LHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 769 ----L~Aar~~~~~~~PVLGINlG~ 789 (998)
....+.+...++|||||-+|.
T Consensus 574 d~~~~~~I~~~~~~~iPvLGICLG~ 598 (717)
T TIGR01815 574 DFDVAGTIDAALARGLPVFGVCLGL 598 (717)
T ss_pred hcccHHHHHHHHHCCCCEEEECHHH
Confidence 333444445689999999886
No 270
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=23.63 E-value=3e+02 Score=34.55 Aligned_cols=89 Identities=11% Similarity=0.074 Sum_probs=51.5
Q ss_pred CCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecC---------CCCCCCHHHHHHHHHHHhcC
Q 001898 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVE---------VRTAPTMEQVEKFASLVSNS 345 (998)
Q Consensus 275 pT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~---------d~~~ps~e~v~~flelL~d~ 345 (998)
++.+++..+.+.+=-.|||.|+.+ .|. .-...|.. ++|+. ....|+.+++.+.+.-+--.
T Consensus 11 Is~~eL~~~l~~~~vvIIDvR~~~----eY~-----~GHIPGAv--~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~ 79 (610)
T PRK09629 11 IEPNDLLERLDAPELILVDLTSSA----RYE-----AGHIRGAR--FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHN 79 (610)
T ss_pred ecHHHHHHHhcCCCEEEEECCChH----HHH-----hCCCCCcE--EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 477777776655334699999753 121 01123333 33321 11235567777776655334
Q ss_pred CCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 346 ~~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
.+.+|++.|..|..+++-++.++ ..+|..
T Consensus 80 ~d~~VVvYd~~g~~~A~R~~w~L-~~~G~~ 108 (610)
T PRK09629 80 PDAVYVVYDDEGGGWAGRFIWLL-DVIGHS 108 (610)
T ss_pred CCCEEEEECCCCCchHHHHHHHH-HHcCCC
Confidence 57799999999876666554444 456764
No 271
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=23.57 E-value=3.1e+02 Score=31.75 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=51.7
Q ss_pred EcCCCCHhhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh----cCC
Q 001898 271 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS----NSS 346 (998)
Q Consensus 271 RSgqpT~eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~----d~~ 346 (998)
+|..+.|.++..+-...=..|||-|.+-+ +.+=|+ .+.-.|..+.+++|-.++. ...
T Consensus 111 vG~yl~p~~wn~~l~D~~~vviDtRN~YE-----------------~~iG~F--~gAv~p~~~tFrefP~~v~~~~~~~~ 171 (308)
T COG1054 111 VGTYLSPKDWNELLSDPDVVVIDTRNDYE-----------------VAIGHF--EGAVEPDIETFREFPAWVEENLDLLK 171 (308)
T ss_pred ccCccCHHHHHHHhcCCCeEEEEcCccee-----------------Eeeeee--cCccCCChhhhhhhHHHHHHHHHhcc
Confidence 56678899988877664488999998731 011111 2223455555555544443 234
Q ss_pred CCcEEEeCcCCCChHHHHHHHHHH
Q 001898 347 KKPLYLHSKEGVWRTYAMVSRWRQ 370 (998)
Q Consensus 347 ~~PVLVHCtAGKDRTG~vvaLll~ 370 (998)
++||++.||.|. |-=-+.++++.
T Consensus 172 ~KkVvmyCTGGI-RCEKas~~m~~ 194 (308)
T COG1054 172 DKKVVMYCTGGI-RCEKASAWMKE 194 (308)
T ss_pred CCcEEEEcCCce-eehhhHHHHHH
Confidence 679999999999 98888776654
No 272
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=23.44 E-value=4.8e+02 Score=29.16 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=47.9
Q ss_pred HHHHhcCCcEEEEcCCCCcCCC-chhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCC
Q 001898 281 KWLMEKGYKTIVDIRAERVKDN-FYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (998)
Q Consensus 281 ~~L~elGIKTVIDLRsee~ee~-~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~~PVLVHCtAGK 358 (998)
+..++.|++..+++-... ..+ .+.....+.+...|+..+.++=. ....+++++.+++..+.+..+.|+-+||+--.
T Consensus 119 ~~a~~~G~~v~~~~eda~-r~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~ 195 (262)
T cd07948 119 EFVKSKGIEVRFSSEDSF-RSDLVDLLRVYRAVDKLGVNRVGIADT-VGIATPRQVYELVRTLRGVVSCDIEFHGHNDT 195 (262)
T ss_pred HHHHHCCCeEEEEEEeeC-CCCHHHHHHHHHHHHHcCCCEEEECCc-CCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 455677999999984432 111 11112234456678888877644 44567888888888775544568877777555
No 273
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=23.18 E-value=98 Score=31.78 Aligned_cols=83 Identities=29% Similarity=0.315 Sum_probs=61.8
Q ss_pred ccCCCCCCCccCCCCCchh------hhhhhhhhhHHHHHHHHHHHHhhcCCCccceeeeeccCCCCCCCcccceeechhh
Q 001898 74 QSNDPSQLPWIGPVPGDIA------EVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGC 147 (998)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ec~v~~~~~~~~~~~led~ii~~~~~ 147 (998)
+.|++.+||-+-|++-|-. +.|-||++|-+-=-..+-=.|+|-|.+-||= .+-....+.|+-|+-+...+..+
T Consensus 28 ~~~pp~~l~~~e~~~~~~~~~~pa~p~~~~~~~laa~i~~~akqId~LIdsLP~~~-~~~e~Ql~~i~kLq~en~e~~~e 106 (139)
T KOG1510|consen 28 QTHPPVPLPNNEPESPDKVNPIPAEPFEEYAQLLAADIAKKAKQIDTLIDSLPGEE-GSAEAQLEKIKKLQEENEEVALE 106 (139)
T ss_pred hcCCcccCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999986 8899999997655555556678888887773 23355556677777777777777
Q ss_pred HHHhhccCCc
Q 001898 148 MLSLLNKGRE 157 (998)
Q Consensus 148 ~~~~ln~g~~ 157 (998)
.-.++.+|..
T Consensus 107 l~~~v~~~e~ 116 (139)
T KOG1510|consen 107 LEELVSKGEK 116 (139)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 274
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=23.03 E-value=77 Score=36.32 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=28.1
Q ss_pred CCccEEEEEcCCchHHHHHHhccC-CCCcEEEEeC
Q 001898 754 ERVDFVACLGGDGVILHASNLFRG-AVPPVISFNL 787 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~-~~~PVLGINl 787 (998)
.++|+||.+|| |+++-+++.+.. ..+|++-|.+
T Consensus 76 ~~~d~IIavGG-Gs~~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 76 QEADVIIGVGG-GKTLDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEeCC
Confidence 47899999999 999999998753 4789999976
No 275
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=22.99 E-value=1.1e+02 Score=34.76 Aligned_cols=59 Identities=22% Similarity=0.154 Sum_probs=41.2
Q ss_pred CcccccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCC-----------C--CcccCC---CCcccHHHHHHHHHc
Q 001898 748 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG-----------S--LGFLTS---HPFEDYRQDLRQVIY 810 (998)
Q Consensus 748 ~~~dl~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINlG-----------~--LGFLt~---~~~eel~~~L~~il~ 810 (998)
+..++...+|++|+-||=||+..+.. .++|++.+..+ . .|.... ++.+++.+++++++.
T Consensus 297 p~~~ll~~~d~~I~hgG~~t~~eal~----~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~ 371 (401)
T cd03784 297 PHDWLLPRCAAVVHHGGAGTTAAALR----AGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLD 371 (401)
T ss_pred CHHHHhhhhheeeecCCchhHHHHHH----cCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhC
Confidence 34556778999999999999998875 36899888542 1 233222 356677777777765
No 276
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=22.76 E-value=82 Score=36.00 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=27.5
Q ss_pred ccccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC
Q 001898 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 787 (998)
Q Consensus 750 ~dl~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGINl 787 (998)
.++...+|++|+-||-||++.|+.. ++|++.+..
T Consensus 286 ~~ll~~~~~~I~hgG~~t~~Eal~~----G~P~v~~p~ 319 (392)
T TIGR01426 286 LEILKKADAFITHGGMNSTMEALFN----GVPMVAVPQ 319 (392)
T ss_pred HHHHhhCCEEEECCCchHHHHHHHh----CCCEEecCC
Confidence 3556789999999999999998854 688988754
No 277
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=22.73 E-value=95 Score=25.46 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=27.0
Q ss_pred cCCccEEEEEcCCchHHH---------HHHhccCCCCcEEEEeCCCC
Q 001898 753 HERVDFVACLGGDGVILH---------ASNLFRGAVPPVISFNLGSL 790 (998)
Q Consensus 753 ~~~~DlVIvLGGDGTlL~---------Aar~~~~~~~PVLGINlG~L 790 (998)
..+.|.+|+.||.++... ....+.....|++|+..|..
T Consensus 44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 90 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQ 90 (92)
T ss_pred cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccc
Confidence 457899999999888733 23333344679999988753
No 278
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=22.21 E-value=3.3e+02 Score=29.16 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=47.5
Q ss_pred hHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC-CcEEEeCcCC
Q 001898 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHSKEG 357 (998)
Q Consensus 279 Dl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~-~PVLVHCtAG 357 (998)
-+++.+++|++..+++-....-.+.+.....+.+...|+..+.++=. ....+++++..+++.+.+..+ .|+=+||+--
T Consensus 113 ~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd 191 (237)
T PF00682_consen 113 AVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADT-VGIMTPEDVAELVRALREALPDIPLGFHAHND 191 (237)
T ss_dssp HHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEET-TS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBT
T ss_pred HHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCc-cCCcCHHHHHHHHHHHHHhccCCeEEEEecCC
Confidence 35667788999999885543112222222334455668988888744 355667788777776654333 6787777764
Q ss_pred C
Q 001898 358 V 358 (998)
Q Consensus 358 K 358 (998)
-
T Consensus 192 ~ 192 (237)
T PF00682_consen 192 L 192 (237)
T ss_dssp T
T ss_pred c
Confidence 4
No 279
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=22.03 E-value=62 Score=34.11 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=26.3
Q ss_pred CCccEEEEEcCCchHH----------HHHHhccCCCCcEEEEeCCC
Q 001898 754 ERVDFVACLGGDGVIL----------HASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 754 ~~~DlVIvLGGDGTlL----------~Aar~~~~~~~PVLGINlG~ 789 (998)
.++|.||.-||-++.. ...+.+...++||+||-.|.
T Consensus 42 ~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~ 87 (200)
T PRK13527 42 PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGL 87 (200)
T ss_pred ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHH
Confidence 3689999999988763 23333334678999998875
No 280
>PRK00915 2-isopropylmalate synthase; Validated
Probab=21.79 E-value=5.8e+02 Score=31.33 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=51.2
Q ss_pred hhHHHHHhcCCcEEEEcCCCCcCCCchhHhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC----CcEEEe
Q 001898 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK----KPLYLH 353 (998)
Q Consensus 278 eDl~~L~elGIKTVIDLRsee~ee~~~~a~e~~~~e~~GI~yIhIPV~d~~~ps~e~v~~flelL~d~~~----~PVLVH 353 (998)
+-+++++++|++..+++-.....++.+.....+.+...|...+.+|=. ....+++++..+++.+.+..+ -|+=+|
T Consensus 124 ~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DT-vG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H 202 (513)
T PRK00915 124 EAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDT-VGYTTPEEFGELIKTLRERVPNIDKAIISVH 202 (513)
T ss_pred HHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccC-CCCCCHHHHHHHHHHHHHhCCCcccceEEEE
Confidence 446678888999888874332122222222334566779999998855 345567777777766643322 589999
Q ss_pred CcCCC
Q 001898 354 SKEGV 358 (998)
Q Consensus 354 CtAGK 358 (998)
|+--.
T Consensus 203 ~HND~ 207 (513)
T PRK00915 203 CHNDL 207 (513)
T ss_pred ecCCC
Confidence 98766
No 281
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=21.71 E-value=53 Score=33.62 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=26.3
Q ss_pred cCCccEEEEEcCCchHH-----HHHHhccCCCCcEEEEeCCC
Q 001898 753 HERVDFVACLGGDGVIL-----HASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 753 ~~~~DlVIvLGGDGTlL-----~Aar~~~~~~~PVLGINlG~ 789 (998)
..++|.||.-||.+... ...+.+....+|||||-+|.
T Consensus 39 ~~~~dgvIl~Gg~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 80 (181)
T cd01742 39 LKNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYGM 80 (181)
T ss_pred ccCCCEEEECCCcccccccccchhhHHHHhcCCCEEEEcHHH
Confidence 35689999999977542 22344445689999998885
No 282
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=21.52 E-value=64 Score=33.54 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=24.9
Q ss_pred ccEEEEEcCCchH-----HHHHHhccCCCCcEEEEeCCC
Q 001898 756 VDFVACLGGDGVI-----LHASNLFRGAVPPVISFNLGS 789 (998)
Q Consensus 756 ~DlVIvLGGDGTl-----L~Aar~~~~~~~PVLGINlG~ 789 (998)
+|.||..||.+.. ....+.+...++|||||-+|.
T Consensus 42 ~~glii~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 80 (188)
T TIGR00888 42 PKGIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGM 80 (188)
T ss_pred CCEEEECCCCCCcCcCCchHHHHHHHhCCCCEEEECHHH
Confidence 4689999997653 345555555689999998885
No 283
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=21.47 E-value=96 Score=35.25 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=27.4
Q ss_pred CccEEEEEcCCchHHHHHHhcc-CCCCcEEEEeC
Q 001898 755 RVDFVACLGGDGVILHASNLFR-GAVPPVISFNL 787 (998)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~-~~~~PVLGINl 787 (998)
++|+||.+|| |+++-+++... ...+|++-|.+
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~~~~p~i~vPT 107 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFLRGIPLSVPTT 107 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhhcCCCEEEecC
Confidence 6899999999 99999998764 35789998875
No 284
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.94 E-value=3.5e+02 Score=32.81 Aligned_cols=96 Identities=22% Similarity=0.358 Sum_probs=56.9
Q ss_pred ccCCCEEEEEecCChhHHHHHHHHHHHHhc-CCCeEEEEcCChh-------hHhhcCCCCccceeeeccCcccccCCccE
Q 001898 687 KTTPRTVLVLKKPGPALMEEAKEVASFLYH-QEKMNILVEPDVH-------DIFARIPGFGFVQTFYLQDTSDLHERVDF 758 (998)
Q Consensus 687 ~~~pk~VlIv~K~~~~~~~~a~~l~~~L~~-~~gi~V~ve~~~~-------~~~~~~~~~~~~~~~~~~~~~dl~~~~Dl 758 (998)
...|++|+||+-+...+... |++-+.+ .+.++|++-|..- ++...+.. -+-..++|+
T Consensus 132 P~~p~~IGVITS~tgAairD---Il~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~------------an~~~~~Dv 196 (440)
T COG1570 132 PFFPKKIGVITSPTGAALRD---ILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIER------------ANQRGDVDV 196 (440)
T ss_pred CCCCCeEEEEcCCchHHHHH---HHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHH------------hhccCCCCE
Confidence 44689999999998766443 3333332 3668888766531 11111111 111234899
Q ss_pred EEEEcCCchHH--------HHHHhccCCCCcEEEEeCCCCcccCCCCcccH
Q 001898 759 VACLGGDGVIL--------HASNLFRGAVPPVISFNLGSLGFLTSHPFEDY 801 (998)
Q Consensus 759 VIvLGGDGTlL--------~Aar~~~~~~~PVLGINlG~LGFLt~~~~eel 801 (998)
+|+-=|=|.+= ..+|.+..+.+||+. -+|.=|+++..|+
T Consensus 197 lIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS----AVGHEtD~tL~Df 243 (440)
T COG1570 197 LIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS----AVGHETDFTLADF 243 (440)
T ss_pred EEEecCcchHHHHhccChHHHHHHHHhCCCCeEe----ecccCCCccHHHh
Confidence 99988889872 245666677899985 2355555554443
No 285
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=20.91 E-value=1.3e+02 Score=34.98 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=20.3
Q ss_pred CCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 001898 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (998)
Q Consensus 346 ~~~PVLVHCtAGKDRTG~vvaLll~llGVs 375 (998)
.+.+++++|..|. |+..++..++ .+|.+
T Consensus 313 ~~~~IvvyC~~G~-rS~~Aa~~L~-~~G~~ 340 (355)
T PRK05597 313 AGDEVVVYCAAGV-RSAQAVAILE-RAGYT 340 (355)
T ss_pred CCCeEEEEcCCCH-HHHHHHHHHH-HcCCC
Confidence 4679999999997 8777665554 35664
No 286
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=20.48 E-value=3.3e+02 Score=28.00 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=31.7
Q ss_pred CCccEEEEEcCC---------chHHHHHHhccCCCCcEEEEeCCCCcc
Q 001898 754 ERVDFVACLGGD---------GVILHASNLFRGAVPPVISFNLGSLGF 792 (998)
Q Consensus 754 ~~~DlVIvLGGD---------GTlL~Aar~~~~~~~PVLGINlG~LGF 792 (998)
+++|++++-||+ -.+++.++.+...+.||..|-.|..-+
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L 112 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVL 112 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHH
Confidence 689999999994 457888888888899999998776433
No 287
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=20.23 E-value=2.6e+02 Score=35.90 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCchH-----HHHHHhccC----CCCcEEEEeCCC
Q 001898 754 ERVDFVACLGGDGVI-----LHASNLFRG----AVPPVISFNLGS 789 (998)
Q Consensus 754 ~~~DlVIvLGGDGTl-----L~Aar~~~~----~~~PVLGINlG~ 789 (998)
.++|.||+-||-|.- ...++.+.. ..+|||||-+|.
T Consensus 52 ~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~ 96 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGF 96 (742)
T ss_pred cCCCEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhh
Confidence 467999999999984 223322222 359999999985
Done!