BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001899
(998 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFN|A Chain A, Crystal Structure Of Human Nad Kinase
pdb|3PFN|B Chain B, Crystal Structure Of Human Nad Kinase
pdb|3PFN|C Chain C, Crystal Structure Of Human Nad Kinase
pdb|3PFN|D Chain D, Crystal Structure Of Human Nad Kinase
Length = 365
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/336 (43%), Positives = 205/336 (61%), Gaps = 36/336 (10%)
Query: 682 QMLMWKTTPRTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHD--IFARIPGF 738
Q L W +P++VLV+KK A L++ KE+ + L +E + VE V + A F
Sbjct: 30 QRLTWNKSPKSVLVIKKXRDASLLQPFKELCTHLX-EENXIVYVEKKVLEDPAIASDESF 88
Query: 739 GFVQTFYL---QDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTS 795
G V+ + +D D+ ++DF+ CLGGDG +L+AS+LF+G+VPPV +F+LGSLGFLT
Sbjct: 89 GAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVXAFHLGSLGFLTP 148
Query: 796 HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFR----------NGKAMPGKV---- 841
FE+++ + QVI GN + LR RL + + NG G
Sbjct: 149 FSFENFQSQVTQVIEGNAA-----VVLRSRLKVRVVKELRGKKTAVHNGLGEKGSQAAGL 203
Query: 842 ----------FDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYST 891
+ VLNEVV+DRG + YLS ++ Y LIT VQGDGVIV+TPTGSTAY+
Sbjct: 204 DXDVGKQAXQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAA 263
Query: 892 AAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQ 951
AAG S +HPNVP + TPICPHSLSFRP+++P L++ + +AR+ AWVSFDG++RQ+
Sbjct: 264 AAGASXIHPNVPAIXITPICPHSLSFRPIVVPAGVELKIXLSPEARNTAWVSFDGRKRQE 323
Query: 952 LSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCL 987
+ GDS+ I S +P+P++ D DWF SL +CL
Sbjct: 324 IRHGDSISITTSCYPLPSICVRDPVSDWFESLAQCL 359
>pdb|3AFO|A Chain A, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
pdb|3AFO|B Chain B, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
Length = 388
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 173/321 (53%), Gaps = 31/321 (9%)
Query: 677 PSTQQQMLMWKTTPRTVLVLKKP-GPALMEEAKEVASFLYHQ-EKMNILVEPDVHDIFAR 734
P+++ Q L+W+ + V + KKP P+ E E + L+ ++N++V+PDV + ++
Sbjct: 28 PNSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQ 87
Query: 735 I--------PGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGA-VPPVISF 785
P + Y D+ R D + LGGDG ILH ++F VPPV++F
Sbjct: 88 DFKSPLENDPNRPHI--LYTGPEQDIVNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAF 145
Query: 786 NLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVL 845
LG+LGFL+ F+++++ ++VI R RL C + + + V +
Sbjct: 146 ALGTLGFLSPFDFKEHKKVFQEVISSR-----AKCLHRTRLECHL-KKKDSNSSIVTHAM 199
Query: 846 NEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCM 905
N++ + RG++P+L+ ++ + +T+ DGV +ATPTGSTAYS +AGGS+V P VP +
Sbjct: 200 NDIFLHRGNSPHLTNLDIFIDGEFLTRTTADGVALATPTGSTAYSLSAGGSIVSPLVPAI 259
Query: 906 LFTPICPHSLSFRPVILPDSARLELKIPDD-----ARSNAWVSFDGKRRQQLSRGDSV-- 958
L TPICP SLSFRP+ILP S+ + +KI S +S DG +Q L GD +
Sbjct: 260 LMTPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDGIPQQDLDVGDEIYV 319
Query: 959 -----RIFMSEHPIPTVNKSD 974
I++ +PT K++
Sbjct: 320 INEVGTIYIDGTQLPTTRKTE 340
>pdb|4HAO|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
pdb|4HAO|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
Length = 304
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 10/244 (4%)
Query: 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVI 809
+D+ ++ D +GGDG +L A+ + VI N G+LGFLT ++ Q L V
Sbjct: 59 ADIGQKADLAVVVGGDGNMLGAARVLARYDIKVIGVNRGNLGFLTDLDPDNALQQLSDV- 117
Query: 810 YGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL 869
L+G Y++ R E ++ +NEVV+ G ++ + E Y DR
Sbjct: 118 -----LEGEYLS-EQRFLLETHVRRTNQQSRISTAINEVVLHPGKVAHMIEFEVYIDDRF 171
Query: 870 ITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 929
+ DG+I+ATPTGSTAYS +AGG ++ P + ++ P+ PH+L+ RP+++ S+ +
Sbjct: 172 AFSQRSDGLIIATPTGSTAYSLSAGGPILTPTLDAIVLVPMFPHTLTARPLVISSSSTIR 231
Query: 930 LKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNW 989
LK S+ +S D + + G+ V I S+ + ++ D + +F++L L W
Sbjct: 232 LKF-SHITSDLEISCDSQIALPIQEGEEVLIRRSDFHLNLIHPKDYS--YFNTLSTKLGW 288
Query: 990 NERL 993
+++L
Sbjct: 289 SKKL 292
>pdb|2AN1|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|C Chain C, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|D Chain D, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
Length = 292
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 128/244 (52%), Gaps = 10/244 (4%)
Query: 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVI 809
+++ ++ D +GGDG +L A+ VI N G+LGFLT ++ Q L V
Sbjct: 58 AEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDV- 116
Query: 810 YGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL 869
L+G YI+ + R E + ++ +NEVV+ G ++ + E Y +
Sbjct: 117 -----LEGRYISEK-RFLLEAQVCQQDRQKRISTAINEVVLHPGKVAHMIEFEVYIDETF 170
Query: 870 ITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 929
+ DG+I++TPTGSTAYS +AGG ++ P++ + P+ PH+LS RP+++ S+ +
Sbjct: 171 AFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTIR 230
Query: 930 LKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNW 989
L+ RS+ +S D + + G+ V I ++ + ++ D + +F++L L W
Sbjct: 231 LRF-SHRRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYS--YFNTLSTKLGW 287
Query: 990 NERL 993
+++L
Sbjct: 288 SKKL 291
>pdb|1Y3H|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Mycobacterium Tuberculosis
pdb|1Y3H|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Mycobacterium Tuberculosis
Length = 307
Score = 89.4 bits (220), Expect = 1e-17, Method: Composition-based stats.
Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 10/205 (4%)
Query: 757 DFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTL- 815
+ V LGGDG L A+ L R A PV+ NLG +GFL E L V+ + +
Sbjct: 77 ELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVE 136
Query: 816 DGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQG 875
D + + + +R I G A LNEV +++G + + R ++
Sbjct: 137 DRLTLDVVVRQGGRIVNRGWA--------LNEVSLEKGPRLGVLGVVVEIDGRPVSAFGC 188
Query: 876 DGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDD 935
DGV+V+TPTGSTAY+ +AGG ++ P++ +L P H+L RP++ A + ++I D
Sbjct: 189 DGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEAD 248
Query: 936 ARSNAWVSFDGKRRQQLSRGDSVRI 960
+A V DG+R + G + +
Sbjct: 249 GH-DALVFCDGRREMLIPAGSRLEV 272
>pdb|1U0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1Y3I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad
Kinase-Nad Complex
pdb|1Y3I|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad
Kinase-Nad Complex
Length = 307
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 10/205 (4%)
Query: 757 DFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTL- 815
+ V LGGDG L A+ L R A PV+ NLG +GFL E L V+ + +
Sbjct: 77 ELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVE 136
Query: 816 DGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQG 875
D + + + +R I G A LNEV +++G + + R ++
Sbjct: 137 DRLTLDVVVRQGGRIVNRGWA--------LNEVSLEKGPRLGVLGVVVEIDGRPVSAFGC 188
Query: 876 DGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDD 935
DGV+V+TPTGSTAY+ +AGG ++ P++ +L P H+L RP++ A + ++I D
Sbjct: 189 DGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEAD 248
Query: 936 ARSNAWVSFDGKRRQQLSRGDSVRI 960
+A V DG+R + G + +
Sbjct: 249 GH-DALVFCDGRREMLIPAGSRLEV 272
>pdb|1Z0S|A Chain A, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0S|B Chain B, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0S|C Chain C, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0S|D Chain D, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0U|A Chain A, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus Bound By Nadp
pdb|1Z0U|B Chain B, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus Bound By Nadp
pdb|1Z0Z|A Chain A, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
pdb|1Z0Z|B Chain B, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
pdb|1Z0Z|C Chain C, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
pdb|1Z0Z|D Chain D, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
Length = 278
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 18/210 (8%)
Query: 741 VQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED 800
V+ S+ E DF+ +GGDG IL + PP+ N G +G LT E+
Sbjct: 54 VEVELFNQPSEELENFDFIVSVGGDGTILRILQKLKRC-PPIFGINTGRVGLLTHASPEN 112
Query: 801 YRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSK 860
+ +L++ + + + R+ C AMP + LNE+ V +
Sbjct: 113 FEVELKKAV------EKFEVERFPRVSC------SAMPDVL--ALNEIAVLSRKPAKMID 158
Query: 861 IECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPV 920
+ + +++ DG IVAT GST Y+ +AGG +V P + C + PI P ++P
Sbjct: 159 VALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPY 218
Query: 921 ILPDSARLEL---KIPDDARSNAWVSFDGK 947
++ ++E+ K A V FDG+
Sbjct: 219 VVSMERKIEVIAEKAIVVADGQKSVDFDGE 248
>pdb|1SUW|A Chain A, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
pdb|1SUW|B Chain B, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
pdb|1SUW|C Chain C, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
pdb|1SUW|D Chain D, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
Length = 249
Score = 77.0 bits (188), Expect = 4e-14, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 24/213 (11%)
Query: 741 VQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED 800
V+ S+ E DF+ +GGDG IL + PP+ N G +G LT E+
Sbjct: 25 VEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-RCPPIFGINTGRVGLLTHASPEN 83
Query: 801 YRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSK 860
+ +L++ + + + R+ C AMP + LNE+ V +
Sbjct: 84 FEVELKKAV------EKFEVERFPRVSCS------AMPDVL--ALNEIAVLSRKPAKMID 129
Query: 861 IECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPV 920
+ + +++ DG IVAT GST Y+ +AGG +V P + C + PI P ++P
Sbjct: 130 VALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPY 189
Query: 921 ILPDSARLE------LKIPDDARSNAWVSFDGK 947
++ ++E + + D +S V FDG+
Sbjct: 190 VVSMERKIEVIAEKAIVVADGQKS---VDFDGE 219
>pdb|1YT5|A Chain A, Crystal Structure Of Nad Kinase From Thermotoga Maritima
pdb|1YT5|B Chain B, Crystal Structure Of Nad Kinase From Thermotoga Maritima
pdb|1YT5|C Chain C, Crystal Structure Of Nad Kinase From Thermotoga Maritima
pdb|1YT5|D Chain D, Crystal Structure Of Nad Kinase From Thermotoga Maritima
Length = 258
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 757 DFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED---YRQDLRQVIYGNN 813
D + +GGDG +L A+ P ++ F G LGFLTS+ ++ + +DLR +
Sbjct: 43 DLIVVVGGDGTVLKAAKKAADGTP-MVGFKAGRLGFLTSYTLDEIDRFLEDLRNWNFREE 101
Query: 814 TLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKV 873
T +I + L + LN+V ++R + + +IE
Sbjct: 102 TR--WFIQIESELGNHL-------------ALNDVTLERDLSGKMVEIEVEVEHHSSMWF 146
Query: 874 QGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARL 928
DGV+++TPTGSTAYS + GG ++ P + +PI P R V++P + ++
Sbjct: 147 FADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSVVIPSNFKV 201
>pdb|2Q5F|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|3V8Q|A Chain A, Crystal Structure Of Nad Kinase 1 H223e Mutant From
Listeria Monocytogenes In Complex With
5'-Amino-5'-Deoxyadenosine
pdb|3V8R|A Chain A, Crystal Structure Of Nad Kinase 1 H223e Mutant From
Listeria Monocytogenes In Complex With
5'-Amino-8-Bromo-5'-Deoxyadenosine
Length = 272
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 18/161 (11%)
Query: 757 DFVACLGGDGVILHASNLFRGAVPPV--ISFNLGSLGFLTSHPFEDYR----QDLRQVIY 810
+ V +GGDG L A + + + + I + G LGF + D+R L +++
Sbjct: 37 EIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGF-----YADWRPAEADKLVKLL- 90
Query: 811 GNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 870
G Y + L + G + LNE V P++ ++ +D
Sbjct: 91 ----AKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFV--VDVVINDIHF 144
Query: 871 TKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPIC 911
+ +GDG+ ++TP+G+TAY+ + GG+++HP++ M T +
Sbjct: 145 ERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMA 185
>pdb|2I1W|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I1W|B Chain B, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I1W|C Chain C, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I1W|D Chain D, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I29|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I2A|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|2I2B|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|2I2C|A Chain A, Crystal Structure Of Lmnadk1
pdb|2I2D|A Chain A, Crystal Structure Of Lmnadk1
pdb|4DY6|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With 2'-Phosphate
Bis(Adenosine)-5'-Diphosphate
pdb|3V7U|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With Mta
pdb|3V7W|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With 5'-Azido-5'-Deoxyadenosine
pdb|3V7Y|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With
5'-N-Propargylamino-5'-Deoxyadenosine
pdb|3V80|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With
5'-O-Propargylamino-5'-Deoxyadenosine
pdb|3V8M|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complexe With
5'-Azido-8-Bromo-5'-Deoxyadenosine
pdb|3V8N|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With
8-Bromo-5'-Amino-5'-Deoxyadenosine, Reacted With A
Citrate Molecule In N Site
pdb|3V8P|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With A New Di-Adenosine
Inhibitor Formed In Situ
Length = 272
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 18/161 (11%)
Query: 757 DFVACLGGDGVILHASNLFRGAVPPV--ISFNLGSLGFLTSHPFEDYR----QDLRQVIY 810
+ V +GGDG L A + + + + I + G LGF + D+R L +++
Sbjct: 37 EIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGF-----YADWRPAEADKLVKLL- 90
Query: 811 GNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 870
G Y + L + G + LNE V P++ ++ +D
Sbjct: 91 ----AKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFV--VDVVINDIHF 144
Query: 871 TKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPIC 911
+ +GDG+ ++TP+G+TAY+ + GG+++HP++ M T +
Sbjct: 145 ERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMA 185
>pdb|2I2F|A Chain A, Crystal Structure Of Lmnadk1
Length = 272
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 18/161 (11%)
Query: 757 DFVACLGGDGVILHASNLFRGAVPPV--ISFNLGSLGFLTSHPFEDYR----QDLRQVIY 810
+ V +GG+G L A + + + + I + G LGF + D+R L +++
Sbjct: 37 EIVISIGGNGTFLSAFHQYEERLDEIAFIGIHTGHLGF-----YADWRPAEADKLVKLL- 90
Query: 811 GNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 870
G Y + L + G + LNE V P++ ++ +D
Sbjct: 91 ----AKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFV--VDVVINDIHF 144
Query: 871 TKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPIC 911
+ +GDG+ ++TP+G+TAY+ + GG+++HP++ M T +
Sbjct: 145 ERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMA 185
>pdb|3PZ6|A Chain A, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|B Chain B, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|C Chain C, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|D Chain D, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|E Chain E, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|F Chain F, The Crystal Structure Of Glleurs-Cp1
Length = 311
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 157 EDVLSGRSSIMNAYRVADISMTEDQLPPLAIFR-------SEMKRCCESMHIALENYLTP 209
+D+L R+ I Y V D+ + + PL I S ++ C ES
Sbjct: 199 KDILENRNGIAEKYGV-DVGLMLEPYSPLPIIEIPDIGTLSAVRLCEES----------- 246
Query: 210 EDVRSLDVWRKLQRLKNVCYDSGFPRG 236
+V SL KL ++K +CY GF G
Sbjct: 247 -NVSSLHDRAKLTQIKEICYTKGFYTG 272
>pdb|2V28|A Chain A, Apo Structure Of The Cold Active Phenylalanine Hydroxylase
From Colwellia Psychrerythraea 34h
pdb|2V28|B Chain B, Apo Structure Of The Cold Active Phenylalanine Hydroxylase
From Colwellia Psychrerythraea 34h
Length = 267
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 686 WKTTPRTVLVLKKPGPALMEEAK-EVASFLYHQEKMNILVEPDV-HDIFARIP 736
W+ P L+ L+ E K VA+F+ +E+M+ L EPD+ H+IF P
Sbjct: 77 WECYPVPALIGFGEFFRLLSEKKFPVATFIRSREEMDYLQEPDIFHEIFGHCP 129
>pdb|2V27|A Chain A, Structure Of The Cold Active Phenylalanine Hydroxylase
From Colwellia Psychrerythraea 34h
pdb|2V27|B Chain B, Structure Of The Cold Active Phenylalanine Hydroxylase
From Colwellia Psychrerythraea 34h
Length = 275
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 686 WKTTPRTVLVLKKPGPALMEEAK-EVASFLYHQEKMNILVEPDV-HDIFARIP 736
W+ P L+ L+ E K VA+F+ +E+M+ L EPD+ H+IF P
Sbjct: 77 WECYPVPALIGFGEFFRLLSEKKFPVATFIRSREEMDYLQEPDIFHEIFGHCP 129
>pdb|2ZSH|A Chain A, Structural Basis Of Gibberellin(Ga3)-Induced Della
Recognition By The Gibberellin Receptor
pdb|2ZSI|A Chain A, Structural Basis Of Gibberellin(Ga4)-Induced Della
Recognition By The Gibberellin Receptor
Length = 351
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 74 QSNDPSQLPWIGPVPGDIAEVEAYCRIFRAAERLHA----ALMDTLCNPLTGEC-----T 124
Q PS L PV GDI V + F H+ A+ DTLC L G C +
Sbjct: 95 QEQPPSILDLEKPVDGDIVPVILF---FHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVS 151
Query: 125 VSYEFTPE 132
V+Y PE
Sbjct: 152 VNYRRAPE 159
>pdb|1QUS|A Chain A, 1.7 A Resolution Structure Of The Soluble Lytic
Transglycosylase Slt35 From Escherichia Coli
pdb|1QUT|A Chain A, The Soluble Lytic Transglycosylase Slt35 From Escherichia
Coli In Complex With N-Acetylglucosamine
pdb|1QDR|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycosylase Slt35
pdb|1QDT|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycoyslase Slt35 In Complex With Calcium
pdb|1D0K|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Two Murodipeptides
(Glcnac-Murnac-L-Ala-D-Glu)
pdb|1D0L|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A
pdb|1D0M|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A And (Glcnac)2
Length = 322
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 549 LSPNHQNLPAGSEKSSDNNG--YVSAGCSTNGFDRGD-RSSMTEANLLTSVTKNLDEQVI 605
+ P H + G + +++ N ++ + +GFDR + +++A L SV + +D Q
Sbjct: 2 VEPQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAP 61
Query: 606 SSSVRDVQRSNG 617
++SV+ NG
Sbjct: 62 TTSVKPPSGPNG 73
>pdb|1LTM|A Chain A, Accelerated X-ray Structure Elucidation Of A 36 Kda
Muramidase/transglycosylase Using Warp
Length = 320
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 551 PNHQNLPAGSEKSSDNNG--YVSAGCSTNGFDRGD-RSSMTEANLLTSVTKNLDEQVISS 607
P H + G + +++ N ++ + +GFDR + +++A L SV + +D Q ++
Sbjct: 2 PQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTT 61
Query: 608 SVRDVQRSNG 617
SV+ NG
Sbjct: 62 SVKPPSGPNG 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,650,400
Number of Sequences: 62578
Number of extensions: 1260255
Number of successful extensions: 2837
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2808
Number of HSP's gapped (non-prelim): 20
length of query: 998
length of database: 14,973,337
effective HSP length: 108
effective length of query: 890
effective length of database: 8,214,913
effective search space: 7311272570
effective search space used: 7311272570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)