RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 001899
(998 letters)
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase;
2.70A {Homo sapiens}
Length = 365
Score = 391 bits (1006), Expect = e-128
Identities = 145/357 (40%), Positives = 217/357 (60%), Gaps = 38/357 (10%)
Query: 666 KVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILV 724
+ ++ + P++Q+ L W +P++VLV+KK +L++ KE+ + L +E M + V
Sbjct: 16 QNPQTIMHIQDPASQR--LTWNKSPKSVLVIKKMRDASLLQPFKELCTHL-MEENMIVYV 72
Query: 725 EPDVHD--IFARIPGFGFVQ---TFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAV 779
E V + A FG V+ + +D D+ ++DF+ CLGGDG +L+AS+LF+G+V
Sbjct: 73 EKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSV 132
Query: 780 PPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAM-- 837
PPV++F+LGSLGFLT FE+++ + QVI GN + LR RL + + +
Sbjct: 133 PPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGN-----AAVVLRSRLKVRVVKELRGKKT 187
Query: 838 ----------------------PGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQG 875
+ VLNEVV+DRG + YLS ++ Y LIT VQG
Sbjct: 188 AVHNGLGEKGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQG 247
Query: 876 DGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDD 935
DGVIV+TPTGSTAY+ AAG SM+HPNVP ++ TPICPHSLSFRP+++P L++ + +
Sbjct: 248 DGVIVSTPTGSTAYAAAAGASMIHPNVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPE 307
Query: 936 ARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNER 992
AR+ AWVSFDG++RQ++ GDS+ I S +P+P++ D DWF SL +CL+ +
Sbjct: 308 ARNTAWVSFDGRKRQEIRHGDSISITTSCYPLPSICVRDPVSDWFESLAQCLHHHHH 364
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding,
mitochondrion NADP, nucleotide-binding, transferase,
transit peptide; HET: NAI; 2.00A {Saccharomyces
cerevisiae}
Length = 388
Score = 380 bits (977), Expect = e-123
Identities = 112/376 (29%), Positives = 178/376 (47%), Gaps = 46/376 (12%)
Query: 661 SCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPG-PALMEEAKEVASFLYHQEK 719
N + + S+ + P+++ Q L+W+ + V + KKP P+ E E + L+
Sbjct: 12 PVNNLRSSSSADFVSPPNSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYP 71
Query: 720 -MNILVEPDVHDIFARIPGF------GFVQTFYLQDTSDLHERVDFVACLGGDGVILHAS 772
+N++V+PDV + ++ Y D+ R D + LGGDG ILH
Sbjct: 72 EVNVIVQPDVAEEISQDFKSPLENDPNRPHILYTGPEQDIVNRTDLLVTLGGDGTILHGV 131
Query: 773 NLFRG-AVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIF 831
++F VPPV++F LG+LGFL+ F+++++ ++VI R RL C +
Sbjct: 132 SMFGNTQVPPVLAFALGTLGFLSPFDFKEHKKVFQEVISSR-----AKCLHRTRLECHLK 186
Query: 832 RNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYST 891
+ V +N++ + RG++P+L+ ++ + +T+ DGV +ATPTGSTAYS
Sbjct: 187 KKDS-NSSIVTHAMNDIFLHRGNSPHLTNLDIFIDGEFLTRTTADGVALATPTGSTAYSL 245
Query: 892 AAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKI-----PDDARSNAWVSFDG 946
+AGGS+V P VP +L TPICP SLSFRP+ILP S+ + +KI S +S DG
Sbjct: 246 SAGGSIVSPLVPAILMTPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDG 305
Query: 947 KRRQQLSRGDSVRIFMSEHPI-------PTVNKS-------------------DQTGDWF 980
+Q L GD + + I PT K+ DW
Sbjct: 306 IPQQDLDVGDEIYVINEVGTIYIDGTQLPTTRKTENDFNNSKKPKRSGIYCVAKTENDWI 365
Query: 981 HSLVRCLNWNERLDQK 996
+ L +N
Sbjct: 366 RGINELLGFNSSFRLT 381
>2an1_A Putative kinase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, transferase; 2.00A {Salmonella typhimurium}
Length = 292
Score = 240 bits (616), Expect = 1e-72
Identities = 72/304 (23%), Positives = 145/304 (47%), Gaps = 19/304 (6%)
Query: 691 RTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDT 749
+ + ++ P P + + + +L + ++VE + ++
Sbjct: 6 KCIGIVGHPRHPTALTTHEMLYRWL-CDQGYEVIVEQQIAHEL-QLKNVPTG------TL 57
Query: 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVI 809
+++ ++ D +GGDG +L A+ VI N G+LGFLT ++ Q L V+
Sbjct: 58 AEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDVL 117
Query: 810 YGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL 869
G + R L ++ + + ++ +NEVV+ G ++ + E Y +
Sbjct: 118 EGRYISE-----KRFLLEAQVCQQDR--QKRISTAINEVVLHPGKVAHMIEFEVYIDETF 170
Query: 870 ITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 929
+ DG+I++TPTGSTAYS +AGG ++ P++ + P+ PH+LS RP+++ S+ +
Sbjct: 171 AFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTIR 230
Query: 930 LKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNW 989
L+ RS+ +S D + + G+ V I ++ + ++ D +F++L L W
Sbjct: 231 LRFSHR-RSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDY--SYFNTLSTKLGW 287
Query: 990 NERL 993
+++L
Sbjct: 288 SKKL 291
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich,
structural genomics, PSI, protein structure initiative;
2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB:
1u0r_A 1y3i_A* 1y3h_A
Length = 307
Score = 223 bits (571), Expect = 4e-66
Identities = 77/312 (24%), Positives = 129/312 (41%), Gaps = 18/312 (5%)
Query: 688 TTPRTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILVEPDV------HDIFARIPGFGF 740
T R+VL++ G E A+ V L K+ + V +
Sbjct: 2 TAHRSVLLVVHTGRDEATETARRVEKVL-GDNKIALRVLSAEAVDRGSLHLAPDDMRAMG 60
Query: 741 VQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED 800
V+ + + + V LGGDG L A+ L R A PV+ NLG +GFL E
Sbjct: 61 VEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEA 120
Query: 801 YRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSK 860
L V+ + ++ R+ L + + G+ + LNEV +++G +
Sbjct: 121 IDAVLEHVVAQDYRVE-----DRLTLDVVVRQGGRIV--NRGWALNEVSLEKGPRLGVLG 173
Query: 861 IECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPV 920
+ R ++ DGV+V+TPTGSTAY+ +AGG ++ P++ +L P H+L RP+
Sbjct: 174 VVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPM 233
Query: 921 ILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWF 980
+ A + ++I D +A V DG+R + G + + + +
Sbjct: 234 VTSPEATIAIEIEADGH-DALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSA--PFT 290
Query: 981 HSLVRCLNWNER 992
LVR
Sbjct: 291 DRLVRKFRLPVT 302
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta
domain2: beta sandwich, structural genomics, PSI,
protein structure initiative; 2.30A {Thermotoga
maritima}
Length = 258
Score = 214 bits (547), Expect = 2e-63
Identities = 54/250 (21%), Positives = 103/250 (41%), Gaps = 22/250 (8%)
Query: 745 YLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQD 804
+ + + D + +GGDG +L A+ P ++ F G LGFLTS+ ++ +
Sbjct: 31 FGEANAPGRVTADLIVVVGGDGTVLKAAKKAADGTP-MVGFKAGRLGFLTSYTLDEIDRF 89
Query: 805 LRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECY 864
L + N + R + E LN+V ++R + + +IE
Sbjct: 90 LEDLRNWNFREE-----TRWFIQIESELGN-------HLALNDVTLERDLSGKMVEIEVE 137
Query: 865 EHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPD 924
DGV+++TPTGSTAYS + GG ++ P + +PI P R V++P
Sbjct: 138 VEHHSSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSVVIPS 197
Query: 925 SARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLV 984
+ ++ ++ D + DG + + + S + + + D+ +
Sbjct: 198 NFKVVVESQRDIN----MLVDG---VLTGKTKRIEVKKSRRYVRILRPPEY--DYVTVIR 248
Query: 985 RCLNWNERLD 994
L + R++
Sbjct: 249 DKLGYGRRIE 258
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding,
structural genomics, NADP, PSI, protein structure
initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus}
SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Length = 278
Score = 204 bits (521), Expect = 1e-59
Identities = 64/292 (21%), Positives = 107/292 (36%), Gaps = 33/292 (11%)
Query: 705 EEAKEVASFLYHQEK----MNILVEPDVHDIFARIPGFG---FVQTFYLQDTSDLHERVD 757
+ LY Q M V RI V+ S+ E D
Sbjct: 11 DYDIPTTENLYFQGGGGGGMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFD 70
Query: 758 FVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDG 817
F+ +GGDG IL + P + N G +G LT E++ +L++ ++
Sbjct: 71 FIVSVGGDGTILRILQKLKRCPP-IFGINTGRVGLLTHASPENFEVELKKA------VEK 123
Query: 818 VYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDG 877
+ R+ C + A LNE+ V + + + +++ DG
Sbjct: 124 FEVERFPRVSCSAMPDVLA--------LNEIAVLSRKPAKMIDVALRVDGVEVDRIRCDG 175
Query: 878 VIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDAR 937
IVAT GST Y+ +AGG +V P + C + PI P ++P ++ ++E+
Sbjct: 176 FIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMERKIEVIA----- 230
Query: 938 SNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNW 989
A V DG ++ + + I SE P F +L +
Sbjct: 231 EKAIVVADG--QKSVDFDGEITIEKSEFPAVFFKNE----KRFRNLFGKVRS 276
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of
lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria
monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A*
2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A*
3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A*
3v8r_A*
Length = 272
Score = 183 bits (466), Expect = 3e-52
Identities = 47/264 (17%), Positives = 92/264 (34%), Gaps = 22/264 (8%)
Query: 740 FVQTFYLQDTSDLHERVDFVACLGGDGVILHASNL--FRGAVPPVISFNLGSLGFLTSHP 797
+ F D + V +GGDG L A + R I + G LGF
Sbjct: 20 MIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWR 79
Query: 798 FEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPY 857
+ + ++ + G L + + LNE V
Sbjct: 80 PAEADKLVKLLAKGEYQKVS-----YPLLKTTVKYGIGKKEAT-YLALNESTVKSSGG-- 131
Query: 858 LSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICP----- 912
++ +D + +GDG+ ++TP+G+TAY+ + GG+++HP++ M T +
Sbjct: 132 PFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRV 191
Query: 913 HSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNK 972
+ P++ P + L+ +D + +S D +R +S I
Sbjct: 192 YRTIGSPLVFPKHHVVSLQPVND--KDFQISVDH-LSILHRDVQEIRYEVSAKKIHFARF 248
Query: 973 SDQTGDWFHSLVRCLNWNERLDQK 996
++ + + L+
Sbjct: 249 RSF--PFWRRVHDSFIED--LEHH 268
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 70.4 bits (172), Expect = 3e-14
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Query: 268 TFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR 327
G E+ L + G ++++ + KD + + ++ + IPV+
Sbjct: 21 QLLSSGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPD--EGKLVTQAGMDYVYIPVD-W 77
Query: 328 TAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQY 371
P +E VE F + + K + +H +R A ++
Sbjct: 78 QNPKVEDVEAFFAAMDQHKGKDVLVHCLAN-YRASAFAYLYQLK 120
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.1 bits (155), Expect = 2e-10
Identities = 105/692 (15%), Positives = 205/692 (29%), Gaps = 203/692 (29%)
Query: 284 MEKGYKTIVDIRAERVKDNFYEAAIDD---AILSGKV--ELIKIPVEVRTAPTMEQVEKF 338
+ YK I+ + + DNF + D +ILS + +I V +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV------SGTLRL 67
Query: 339 ASLVSNSSKKPLYLHSKEGVWRTYA-MVSRWRQYMARCASQISGQTITSNDVLLKDSTRT 397
+ + ++ + +E + Y ++S + R S ++ I D L D+
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 398 RKLKASAGKFLLEEKYETVKENQDEIQTKNGVF-----GFGLSV-------DMD-KRNQS 444
K S + Y +++ E++ V G G + +
Sbjct: 127 AKYNVSR-----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 445 NGAYKGLSSVEGVESAKEVDTAVGSLGTTFSKE--TDPFKAQVPPSNFVS-KKEMSRFFR 501
+ +++ S + V + L + + S + E+ R +
Sbjct: 182 FKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 502 SKTTSPPR---------------YFNYQSKRMDVLPSEIVSSGPVSGVAETRYSQWSLSG 546
SK FN K +L ++ TR+ Q +
Sbjct: 240 SK--PYENCLLVLLNVQNAKAWNAFNLSCK---IL----LT---------TRFKQVT--- 278
Query: 547 NNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVIS 606
+ LS + S D++ + + S+ L ++L +V++
Sbjct: 279 DFLSAATT-----THISLDHH--------SMTLTPDEVKSLL-LKYLDCRPQDLPREVLT 324
Query: 607 SSVRDVQRSNGKPSNSGDDDLGPIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFS-CNRE 665
++ P ++ A S +R L D + N +
Sbjct: 325 TN--------------------PRRLSIIAES---IRD--------GLATWDNWKHVNCD 353
Query: 666 KVT---ESSLAFTHPSTQQQM-------------------LMW----KTTPRTVLV-LKK 698
K+T ESSL P+ ++M L+W K+ V+ L K
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 699 PGPALMEEAKEVASFLYH---QEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHER 755
+ ++ KE + + K+ + E +H + + +TF D +
Sbjct: 414 YS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYL- 469
Query: 756 VDFVACLGGDGVIL-----HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYR---QDLRQ 807
D H N+ L + FL D+R Q +R
Sbjct: 470 ---------DQYFYSHIGHHLKNIEHPE-----RMTLFRMVFL------DFRFLEQKIRH 509
Query: 808 VIYGNNTLDGVYITL-RMRLCCE-IFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIE--- 862
N + TL +++ I N V +L+ +L KIE
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD----------FLPKIEENL 559
Query: 863 -CYEHDRLITKVQGDGVIVATPTGSTAYSTAA 893
C ++ L ++ I + A
Sbjct: 560 ICSKYTDL---LR----IALMAEDEAIFEEAH 584
Score = 49.1 bits (116), Expect = 8e-06
Identities = 78/528 (14%), Positives = 140/528 (26%), Gaps = 203/528 (38%)
Query: 3 LLVDMQRLSSPATGILCSSKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSF 62
+L +Q+L S H++ KL R S++ ++ ++ ++ ++
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKL-----------RIHSIQAELRRLLKSKPYEN- 245
Query: 63 SLNLGLDSQVIQSNDPSQLPWIGPVPGDIAEVEAY---CRIFRAAERLHAALMDT----L 115
L L L + +Q+ A+ C+I L+ T +
Sbjct: 246 CL-LVLLN--VQN------AKA---------WNAFNLSCKI----------LLTTRFKQV 277
Query: 116 CNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVADI 175
+ L+ T L D+ + SLL K Y +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDE-------VKSLLLK---------------Y----L 311
Query: 176 SMTEDQLP-------PLAI------FRSEMKR-------CCESMHIALE---NYLTPEDV 212
LP P + R + C+ + +E N L P +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 213 RSLDVWRKLQRLKNVCYD--SGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVTFC 270
R +D S FP P L W D+ D
Sbjct: 372 RK-------------MFDRLSVFPPSAHIPTILLSLIWF---------DVIKSDVM---- 405
Query: 271 RGGQVTEEGLKW-LMEKGYK----TIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVE 325
V + K+ L+EK K +I I E E A+ +I+ +
Sbjct: 406 ---VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 326 VRTAP---------------TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQ 370
P +E E+ + ++L R+ +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLF------RMVFLD------------FRFLE 504
Query: 371 YMARCASQISGQTITSNDVLL-----------KDSTRTRKLKASAGKFLLEEKYETV--- 416
R S + + + L D R + A FL K E
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA-ILDFL--PKIEENLIC 561
Query: 417 KENQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEVD 464
+ D ++ L + ++ E+ K+V
Sbjct: 562 SKYTDLLR-------IALM------AEDEAIFE--------EAHKQVQ 588
Score = 37.9 bits (87), Expect = 0.021
Identities = 42/346 (12%), Positives = 89/346 (25%), Gaps = 112/346 (32%)
Query: 2 WLLVDMQRLSSPATGI------LCSSKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVS 55
+L Q L + + + + W + + + ++
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 56 AELSKSFSLNLGL---DSQVIQSNDPSQ---LPWIGPVPGDIAEVEAYCRIFRAAER--- 106
AE K F L + + + P+ L W + D+ V + E+
Sbjct: 369 AEYRKMF-DRLSVFPPSAHI-----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 107 -----LHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLS 161
+ + ++ E + L IV
Sbjct: 423 ESTISIPSIYLELKV-------------KLENEYALHRSIV------------------- 450
Query: 162 GRSSIMNAYRVADISMTEDQLPPLA---IFRSEMKRCCESMHIA--LENYLTPEDVRSLD 216
+ Y + ++D +PP + HI L+N PE +
Sbjct: 451 ------DHYNIPKTFDSDDLIPPYLDQYFYS----------HIGHHLKNIEHPERM---T 491
Query: 217 VWRKL--------QRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVT 268
++R + Q++++ I L K I D +
Sbjct: 492 LFRMVFLDFRFLEQKIRH----DSTAWNASGSILNTLQQ-----LKFYKPYICDNDPKYE 542
Query: 269 FCRGGQVTEEGLKWLMEKG-------YKTIVDIRAERVKDNFYEAA 307
++ L +L + Y ++ I + +E A
Sbjct: 543 -----RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 37.9 bits (87), Expect = 0.021
Identities = 56/338 (16%), Positives = 103/338 (30%), Gaps = 91/338 (26%)
Query: 715 YHQEKMNILV-EPDVH--DIFARIPGF--GFVQTFYLQDTSDL------HERVDFVACLG 763
+H M+ E DI + F FV F +D D+ E +D +
Sbjct: 2 HHHHHMDFETGEHQYQYKDI---LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 764 GD--------GVIL-HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQ---------DL 805
+L + + V V+ N FL S + RQ +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 806 RQVIYGNNTL---DGV-----YITLRMRLCCE------IFRNGKAMP--GK---VFDVL- 845
R +Y +N + V Y+ LR L E + +G + GK DV
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDG--VLGSGKTWVALDVCL 172
Query: 846 NEVVVDRGSNP--YLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVP 903
+ V + +L+ C + ++ +Q +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ------------KLLYQIDPNWTSRSDHS 220
Query: 904 CMLFTPICPHSLSFRPVILPDSARLE--LKIPDDARS-NAWVSFDGK-------RRQQLS 953
+ I HS+ L S E L + + ++ AW +F+ R +Q++
Sbjct: 221 SNIKLRI--HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 954 R---GDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLN 988
+ +H T+ D+ ++ L+
Sbjct: 279 DFLSAATTTHISLDHHSMTLTP-DEVKSLL---LKYLD 312
Score = 35.2 bits (80), Expect = 0.15
Identities = 56/447 (12%), Positives = 115/447 (25%), Gaps = 120/447 (26%)
Query: 592 LLTSVTKNLDEQVISSSVRDVQRSN--GKPSNSGDDDLGP--IVGNMCASSTGVVRVQSR 647
+ N D + + + + S D G + + + +V
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV----- 79
Query: 648 KKAEMFL---VRTD-GF--SCNREKVTESSLAFTHPSTQQQMLMWKT----TPRTVLVLK 697
+ F+ +R + F S + + + S+ Q+ L + V
Sbjct: 80 ---QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNV---- 131
Query: 698 KPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFG----FVQTFYLQDTSDLH 753
+ ++ L ++ + + G G + +
Sbjct: 132 -SRLQPYLKLRQA---LLELRPAKNVL---IDGV----LGSGKTWVALDV--CLS-YKVQ 177
Query: 754 ERVDF------VA-CLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLR 806
++DF + C + V+ L P S + +LR
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELR 235
Query: 807 QVI----YGNN--TLDGVYITLRMRLCCEIFRNGKAMPGKVFD----VL----NEVVVDR 852
+++ Y N L V N KA F+ +L + V D
Sbjct: 236 RLLKSKPYENCLLVLLNVQ-------------NAKAW--NAFNLSCKILLTTRFKQVTDF 280
Query: 853 GSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICP 912
S + I H +T + ++ +P ++ I
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 913 HSLSFRPVILPDSARLELKI--------PDDARSNAWVSFDGKRRQQLSRGDSVRIFMSE 964
++ + +L I P + R K +LS +F
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR---------KMFDRLS------VFPPS 384
Query: 965 HPIPTVNKSDQTGDWFHSLVRCLNWNE 991
IPT+ + L W +
Sbjct: 385 AHIPTI-------------LLSLIWFD 398
>2f46_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria
meningitidis Z2491}
Length = 156
Score = 57.7 bits (139), Expect = 8e-10
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 3/113 (2%)
Query: 268 TFCRGGQVTEEGLKWLMEKGYKTIVDIRAER-VKDNFYEAAIDDAILSGKVELIKIPVEV 326
Q+T+ + + + G KTI+ R +R + A I + V
Sbjct: 23 HLYISPQLTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVT 82
Query: 327 RTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQI 379
VE F L+ ++ P+ + + G R + R +I
Sbjct: 83 ARDIQKHDVETFRQLI-GQAEYPVLAYCRTG-TRCSLLWGFRRAAEGMPVDEI 133
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 54.0 bits (129), Expect = 1e-08
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 271 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAP 330
R G +L G ++I+ + E ++ + + I L + +E P
Sbjct: 17 RSGFPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-----RLFQFGIEGNKEP 71
Query: 331 TM----EQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQI 379
+ ++ ++ + P+ +H K G RT +V R+ C + I
Sbjct: 72 FVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSI 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 2e-08
Identities = 107/660 (16%), Positives = 200/660 (30%), Gaps = 227/660 (34%)
Query: 312 ILS-GKVELIKIPVEVRTAPTMEQV-EKFASLVSNSSKKPLYLHSKEGVWRTYAMVSR-- 367
LS G +E + V + Q+ E+F ++ + EG +
Sbjct: 10 TLSHGSLE-HVLLVPTASFFIASQLQEQFNKILPEPT---------EGFAADDEPTTPAE 59
Query: 368 -WRQYMARCASQISGQTITSNDVLLKDSTRTRKLKASAGKFLLEEKYETVKENQDEIQTK 426
+++ +S + + D + L +F E Y ++ N +I
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQV---------LNLCLTEF--ENCY--LEGN--DIHA- 103
Query: 427 NGVFGFGLSVDMDKRNQSNG----AY------KGLSSVEGVESA--KEVDT------AV- 467
L + D Y + SA + V A+
Sbjct: 104 ---LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 468 ---GSLGTTFSKE----TDPFKAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDV 520
G+ F +E + V S + +S R+ + + ++ +++
Sbjct: 161 GGQGNTDDYF-EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF----TQGLNI 215
Query: 521 L----------PSEIVSSGPVS----GVAETRYSQWSLSGNNLSPNHQNLPA---GSEKS 563
L + + S P+S GV + + + ++ L L + G+ +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGV--IQLAHYVVTAKLLGFTPGELRSYLKGA--T 271
Query: 564 SDNNGYVSAGC-----STNGFDRGDRSSMT-------EANLLTSVTKNLDEQVISSSVRD 611
+ G V+A S F R ++T T +L ++ S
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT-SLPPSILEDS--- 327
Query: 612 VQRSNGKPSNSGDDDLGPIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESS 671
++ + G PS P M + + ++++ + ++ +T+ ++V E S
Sbjct: 328 LENNEGVPS--------P----MLS-----ISNLTQEQVQDYVNKTNSHLPAGKQV-EIS 369
Query: 672 LAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVE----PD 727
L + ++V GP S LY +N+ + P
Sbjct: 370 L--------------VNGAKNLVV---SGPP--------QS-LYG---LNLTLRKAKAPS 400
Query: 728 VHDIFARIPGFG-----FVQTF----------YLQDTSDLHERVDFVACLGGDGVILHAS 772
D +RIP F F F L SDL L + V +A
Sbjct: 401 GLDQ-SRIP-FSERKLKFSNRFLPVASPFHSHLLVPASDL-----INKDLVKNNVSFNAK 453
Query: 773 NLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFR 832
++ + PV GS DLR L G ++ R+ I R
Sbjct: 454 DI---QI-PVYDTFDGS--------------DLR-------VLSG---SISERIVDCIIR 485
Query: 833 NGKAMPGKV-FDVLNEV----VVD--RGSNPYLSKIECYEHDRLITK-VQGDG--VIVAT 882
+P V ++ + ++D G L L + G G VIVA
Sbjct: 486 ----LP--VKWETTTQFKATHILDFGPGGASGLGV--------LTHRNKDGTGVRVIVAG 531
Score = 56.2 bits (135), Expect = 6e-08
Identities = 106/626 (16%), Positives = 187/626 (29%), Gaps = 245/626 (39%)
Query: 468 GSLGTTFSKETDPFKAQVPPSNFVSKKEMSRFFRS-------------KTTSPP----RY 510
GSL VP ++F ++ F + T+P ++
Sbjct: 14 GSLEHVLL---------VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 511 FNYQSKRMDVLPSEIVSSGPVSGVA----ETRYSQWSLSGNNLSPNH---QNLPAGSEKS 563
Y S ++ PS++ V + E Y L GN++ H L ++ +
Sbjct: 65 LGYVSSLVE--PSKVGQFDQVLNLCLTEFENCY----LEGNDI---HALAAKLLQENDTT 115
Query: 564 SDNNG-----YVSAGCSTN-GFDRGDRSSMTEANLLTSVTKNLDEQVISSSVRDV---QR 614
Y++A FD+ S+ L +V + ++ + + Q
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSA-----LFRAVGEG------NAQLVAIFGGQ- 163
Query: 615 SNGKPSNSGD--DDL-------GPIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNRE 665
G N+ D ++L +VG++ S + R + V T G
Sbjct: 164 --G---NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL----- 213
Query: 666 KVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVE 725
+L W L+ P
Sbjct: 214 ----------------NILEW---------LENPSNT----------------------- 225
Query: 726 PDVHDIFARI----PGFGFVQ-TFYLQDTSDLHERVDFVAC--LGGDGVILHASNL---F 775
PD D I P G +Q Y+ V LG L
Sbjct: 226 PDK-DYLLSIPISCPLIGVIQLAHYV------------VTAKLLG-----FTPGELRSYL 267
Query: 776 RGA---VPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIF- 831
+GA +++ ++ + +E + +R+ I L +I +R C E +
Sbjct: 268 KGATGHSQGLVT----AVAIAETDSWESFFVSVRKAI---TVL--FFIGVR---CYEAYP 315
Query: 832 -------------RNGKAMPG---KVFDVLNEVV---VDRGSNPYLSKIECYEHDRL-IT 871
N + +P + ++ E V V++ +N +L ++ I+
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK-TNSHLP-----AGKQVEIS 369
Query: 872 KVQG-DGVIVATPTGS------TAYSTAAGGSMVHPNVP--------CMLFTPI-CP-HS 914
V G ++V+ P S T A + +P F P+ P HS
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 915 LSFRPV---ILPDSARL-------ELKIPDDARSNAWV--SFDGKRRQQLSRGDSVRIF- 961
P I D + +++IP V +FDG + LS S RI
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIP--------VYDTFDGSDLRVLSGSISERIVD 481
Query: 962 -MSEHPI--PTVNKSDQTGDWFHSLV 984
+ P+ T + T H L
Sbjct: 482 CIIRLPVKWETTTQFKAT----HILD 503
Score = 54.3 bits (130), Expect = 2e-07
Identities = 67/425 (15%), Positives = 120/425 (28%), Gaps = 151/425 (35%)
Query: 657 TDGFSCNREKVTESSLA-----FTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVA 711
T+GF+ + E T + L + + + VL + E +
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPS-----KVGQFDQVLN----LCLTEFEN-- 93
Query: 712 SFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVD-----FVACLGGDG 766
+L D+H + A++ ++ + L + + A +
Sbjct: 94 CYLEGN---------DIHALAAKLLQ---------ENDTTLVKTKELIKNYITARIMAKR 135
Query: 767 VI--LHASNLFRGAVPPVISFNLGSLGFLTSHPF------EDYRQDLRQV--IYGNNTLD 816
S LFR G+ + F +DY ++LR + Y + L
Sbjct: 136 PFDKKSNSALFRAV-------GEGNAQLVAI--FGGQGNTDDYFEELRDLYQTY--HVLV 184
Query: 817 GVYITLRMRLCCEIFRNGKAMP---GKVFDVLN--EVVVDRGSNPYLS------------ 859
G I E+ R + ++L E + YL
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 860 ---------KIECYEHDRLITKVQG-----DGVIVAT-----PTGSTAYSTAAGGSMVHP 900
K+ + L + ++G G++ A + + + + +
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR--KAIT- 301
Query: 901 NVPCMLF---------TPICPHSLSFRPVILPDSARLELKIP---------DDARSNAWV 942
+LF P + S P IL DS +P + +V
Sbjct: 302 ----VLFFIGVRCYEAYP----NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 943 SFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQ---TGDWFH--SLVRCLNWNER----- 992
+ K L G V I + VN + +G SL LN R
Sbjct: 354 N---KTNSHLPAGKQVEISL-------VNGAKNLVVSG---PPQSLYG-LNLTLRKAKAP 399
Query: 993 --LDQ 995
LDQ
Sbjct: 400 SGLDQ 404
Score = 47.0 bits (111), Expect = 4e-05
Identities = 72/476 (15%), Positives = 133/476 (27%), Gaps = 175/476 (36%)
Query: 15 TGILCSSKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSF------------ 62
+L + ++L F L E + AEL F
Sbjct: 18 HVLLVPTASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 63 ------SLNLGLD---SQVIQSND----PSQLPWIGPVPGDIAEVEAYCRIFRAAERLHA 109
LNL L + ++ ND ++L + + + + + A +
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL--QENDTTLVKTKELIKNYITARIM-- 132
Query: 110 ALMDTLCNPLTGECTVSYEFTPEEKPLLED------KIVSVLGCMLSLLNKG---REDVL 160
P L ++V++ G G +D
Sbjct: 133 -----AKRPFD---------KKSNSALFRAVGEGNAQLVAIFG--------GQGNTDDYF 170
Query: 161 SGRSSIMNAYR--VAD-ISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDV 217
+ Y V D I + + L L R+ + E + + L++
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELI--RTTLD--AEKVF-----------TQGLNI 215
Query: 218 --WRKLQRLKNVCYDSGFPRGDDY--------PIHTL--FAN---------WSPVYLSN- 255
W L+N S P DY P+ + A+ ++P L +
Sbjct: 216 LEW-----LEN---PSNTP-DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 256 -------SKD-----DIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNF 303
S+ IA DS +F + + L G R + +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESF---FVSVRKAITVLFFIGV---------RCYEAY 314
Query: 304 YEAAIDDAILSGKVELIKIPVEVRTAPT-M--------EQVEKFASLVSNSS---KKPLY 351
++ +IL +E P+ M EQV+ + + NS K +
Sbjct: 315 PNTSLPPSILEDSLE------NNEGVPSPMLSISNLTQEQVQDYVNKT-NSHLPAGKQVE 367
Query: 352 LHSKEGVWRTYAMV-SRWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKASAGK 406
+ ++V + + +SG + L + RK KA +G
Sbjct: 368 I----------SLVNGA-KNLV------VSGPPQS----LYGLNLTLRKAKAPSGL 402
Score = 46.2 bits (109), Expect = 6e-05
Identities = 61/350 (17%), Positives = 101/350 (28%), Gaps = 122/350 (34%)
Query: 2 WLLVDMQRLSSPATGILCSS----------KLHNNETKLWGFGFR-FKLQRRNESVRRRV 50
WL ++P L S +L + GF +L+ +
Sbjct: 218 WL---ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 51 KLVVSA---ELSKS---FSLNLGLDSQVIQSNDPSQLPWIGPVPGDIAEVEAYCRIFRAA 104
+ +V+A + S F +++ + I L +IG + EAY
Sbjct: 275 QGLVTAVAIAETDSWESFFVSV---RKAITV-----LFFIG-----VRCYEAYPNTSLPP 321
Query: 105 ERLHAALMDTLCNPLTGECTVSY----------------EFTPEEKPLLEDKIVSVLGCM 148
+ L D+L N E S T P K V +
Sbjct: 322 ----SILEDSLEN---NEGVPSPMLSISNLTQEQVQDYVNKTNSHLP--AGKQVEI---- 368
Query: 149 LSLLNKGREDVLSG--RS--SIMNAYRVADISMTEDQ----------------LPPLAIF 188
SL+N + V+SG +S + R A DQ LP + F
Sbjct: 369 -SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 189 RSEMKRCCESMHIALENYLTP-EDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFAN 247
S L P D+ + D+ + NV ++ D I
Sbjct: 428 HSH--------------LLVPASDLINKDLVK-----NNVSFN-----AKDIQI------ 457
Query: 248 WSPVYLSNSKDDIASKDSEVT--FCRGGQVTEEGLKW--LMEKGYKTIVD 293
PVY + D+ ++ + +KW + I+D
Sbjct: 458 --PVYDTFDGSDLRVLSGSISERIVD--CIIRLPVKWETTTQFKATHILD 503
Score = 38.1 bits (88), Expect = 0.017
Identities = 39/258 (15%), Positives = 65/258 (25%), Gaps = 102/258 (39%)
Query: 796 HPFEDYRQDLRQVIYGNNTLDGVYIT------LR---MRLCCEIFRNGKAMPGKVFDVLN 846
H + Y + ++ N ++ +R + E +GK K+F +N
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 847 EVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVAT----P---TGSTA----------- 888
E + + + G++ AT P A
Sbjct: 1712 EH---------STSY-TFRSE--------KGLLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 889 --YSTAAGGSMVHPNVPCMLFTPICPHSL-------------SFRPVILPDSARLELKIP 933
+T AG HSL S + +
Sbjct: 1754 PADATFAG------------------HSLGEYAALASLADVMSIE-----SLVEV-VFYR 1789
Query: 934 DDARSNAWVSFDGKRRQQLS----RGDSVRIFMSEHPIPTVNK--SDQTGDWFHSLVRCL 987
A V D R V S+ + V + +TG W +V
Sbjct: 1790 GMTMQVA-VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG-WLVEIV--- 1844
Query: 988 NWNERLDQ-------KAL 998
N+N Q +AL
Sbjct: 1845 NYNVENQQYVAAGDLRAL 1862
Score = 36.2 bits (83), Expect = 0.063
Identities = 41/262 (15%), Positives = 72/262 (27%), Gaps = 98/262 (37%)
Query: 631 VGNMC----ASSTGVVRVQSRKKAEMFLVRTDGFS---CNREKVTESSLAFTHPSTQQ-- 681
G M +S + +A+ T GFS ++ F ++
Sbjct: 1629 QG-MGMDLYKTSK-AAQ-DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 682 ---QMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGF 738
++++T L +K + E + +F + ++
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSY-TFRSEKGLLS----------------- 1727
Query: 739 GFVQTFYLQDTSDLHERVDFVACLGGDGVILHASN-LFR-----GAVPPVISFNLG-SLG 791
T + Q A + F G +P +F G SLG
Sbjct: 1728 ---ATQFTQ-----------PA-------LTLMEKAAFEDLKSKGLIPADATF-AGHSLG 1765
Query: 792 -F--LTSH----PFED------YRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAM- 837
+ L S E YR QV + E+ R+ M
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD---------------ELGRSNYGMI 1810
Query: 838 ---PGKVFDVLNE----VVVDR 852
PG+V ++ VV+R
Sbjct: 1811 AINPGRVAASFSQEALQYVVER 1832
Score = 31.2 bits (70), Expect = 2.1
Identities = 44/272 (16%), Positives = 78/272 (28%), Gaps = 104/272 (38%)
Query: 423 IQTKNGVFGFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEV-DTA----VGSLGTTFSKE 477
Q + G G MD S ++A++V + A + G FS
Sbjct: 1626 SQEQ----GMG----MDLYKTS-------------KAAQDVWNRADNHFKDTYG--FS-- 1660
Query: 478 TDPFKAQVPPSNFVSK--KEMSRFFRSKTTSPPRYFNYQS-----------------KRM 518
+ V ++ F + R NY + K +
Sbjct: 1661 ---------ILDIVINNPVNLTIHFGGEKGKRIRE-NYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 519 DVLPSEIVSSGPVSGVAETRYSQ-----WS------LSGNNLSPNHQNLPAG-S--EKSS 564
+ + ++ T+++Q L L P AG S E
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF-AGHSLGE--- 1766
Query: 565 DNNGYVSAGCSTNG-----------FDRGDRSSMTEANLLTSVTKNLDEQVISSSVRDVQ 613
Y +A S F RG +M A V + DE S+ +
Sbjct: 1767 ----Y-AALASLADVMSIESLVEVVFYRG--MTMQVA-----VPR--DELG-RSNYGMIA 1811
Query: 614 RSNGKPSNSGDDD-LGPIVGNMCASSTGVVRV 644
+ G+ + S + L +V + + +V +
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 38.9 bits (91), Expect = 0.002
Identities = 14/95 (14%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQV 335
++L++ G + +V + + + L ++ + P +Q+
Sbjct: 25 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGL---------TLHRLRIPDFCPPAPDQI 75
Query: 336 EKFASLV--SNSSKKPLYLHSKEGVWRTYAMVSRW 368
++F +V +N+ + + +H G RT M++ +
Sbjct: 76 DRFVQIVDEANARGEAVGVHCALGFGRTGTMLACY 110
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 37.2 bits (86), Expect = 0.009
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 284 MEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLV- 342
I+D+ +Y+ L + KI V +T P V++F V
Sbjct: 52 QNPSIGAIIDLTNT---SKYYDG---VHFLRAGLLYKKIQVPGQTLPPESIVQEFIDTVK 105
Query: 343 ---SNSSKKPLYLHSKEGVWRTYAMVSRW 368
+ +H G+ RT MV R+
Sbjct: 106 EFTEKCPGMLVGVHCTHGINRTGYMVCRY 134
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 38.2 bits (88), Expect = 0.014
Identities = 28/202 (13%), Positives = 64/202 (31%), Gaps = 14/202 (6%)
Query: 314 SGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHSKEGVWRT------YAMVS 366
++ ++ P V+KF + K L+ H G+ RT + ++
Sbjct: 198 QHGANYFRLTLQDHFRPDDPDVDKFLEFYKSLPKDAWLHYHCYAGMGRTTIFMVMHDILK 257
Query: 367 RWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKASAGKFLLEEK-YETVKENQDEIQT 425
+ Q + + D + KA ++ + Y+ VKEN D
Sbjct: 258 NAKDVSFDDIIQRQKLIGIVDLSEIPDKKKNYGRKAYIERYQFVQHFYDYVKENPDLKTP 317
Query: 426 KNGVFGFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEVDTAVGSLGTTFSKETDPFKAQV 485
+ + +K N Y G + ++ ++ + F + + K
Sbjct: 318 ------YSVWAKKNKVNSWEPDYNGYIWRLDTKDRNQLPRNFRTMNSAFRTDVNVKKTGK 371
Query: 486 PPSNFVSKKEMSRFFRSKTTSP 507
+ ++K + + S +
Sbjct: 372 GFTPTPTRKGLDTLYMSGSAEF 393
Score = 29.4 bits (65), Expect = 7.7
Identities = 22/164 (13%), Positives = 56/164 (34%), Gaps = 17/164 (10%)
Query: 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAID--------DAILSGKVELIKIPVE 325
+V ++ L K+++ ++ K + + + +I
Sbjct: 448 EVLKDENSRLNAARGKSLIVAELDKDKMPIDPKPVKIESVMTEQQLVEKNGLHYYRIAAT 507
Query: 326 VRTAPTMEQVEKFASLVSNSSKKP-LYLHSKEGVWRT---YAMVSRWRQYMARCASQISG 381
P+ +++F + L+ H + G RT AM + +S
Sbjct: 508 DHIWPSAANIDEFINFTRTMPANAWLHFHCQAGAGRTTAYMAMYDMMKNPDVSLGDILSR 567
Query: 382 QTITSNDVLLKDSTRTRKLKASAGKF-----LLEEKYETVKENQ 420
Q + + + + + + + A + ++E+ Y+ V+EN
Sbjct: 568 QYLLGGNYVAYEIAKPKPDQWKADYYHQKAHMIEKFYQYVQENH 611
>1vee_A Proline-rich protein family; hypothetical protein, structural
genomics, rhodanese domain, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} PDB: 2dcq_A
Length = 134
Score = 34.6 bits (79), Expect = 0.053
Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 16/90 (17%)
Query: 211 DVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSE---- 266
D+R+ +R+ G P + ++ ++ K +
Sbjct: 26 DIRATADFRQ----------VGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENT 75
Query: 267 --VTFCRGGQVTEEGLKWLMEKGYKTIVDI 294
+ +E + + G+K+ I
Sbjct: 76 TLYILDKFDGNSELVAELVALNGFKSAYAI 105
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 33.6 bits (76), Expect = 0.33
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 317 VELIKIPVEVRTAPTMEQVEKFASLVSNSSKK-PLYLHSKEGVWRT------YAMVSRWR 369
+ +I PT E +++F + + L+ HS+ GV RT M+
Sbjct: 182 MRYFRIAATDHVWPTPENIDRFLAFYRTLPQDAWLHFHSEAGVGRTTAFMVMTDMLKNPS 241
Query: 370 QYMARCAS---QISGQTITSNDVLLKDSTRTRKLKASAGKFLLEEKYETVKENQDE 422
+ +I G + KD + ++E+ Y V+EN+ +
Sbjct: 242 VSLKDILYRQHEIGGFYYGEFPIKTKDKDSWKTKYYREKIVMIEQFYRYVQENRAD 297
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD
DATA with FBAR, structural genomics, PSI; 1.80A
{Mycobacterium tuberculosis}
Length = 148
Score = 31.6 bits (71), Expect = 0.52
Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 22/96 (22%)
Query: 211 DVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPV-----------YLSNSKDD 259
DVR WR G P ++ W+ D
Sbjct: 26 DVRCEAEWRF----------VGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIPAD 75
Query: 260 IASKDSEVTF-CRGGQVTEEGLKWLMEKGYKTIVDI 294
+ V F CR G + + E G ++
Sbjct: 76 ADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNV 111
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 31.6 bits (71), Expect = 1.1
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 284 MEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP-VEVRTAPTMEQVEKFASLV 342
++ +VD+ FY+ + I ++ IK+ PT E E F L
Sbjct: 79 LKVKMGLLVDLTNT---SRFYD---RNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLC 132
Query: 343 ----SNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375
+ + + +H G RT ++ +
Sbjct: 133 ERFNERNPPELIGVHCTHGFNRTGFLICAFLVEKMDW 169
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 1.8
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 19/67 (28%)
Query: 365 VSRWR-QYMARCASQISGQTITSNDVLLKDSTRTRK---LKASAGKFLLEEKYETVKENQ 420
+ +WR + R D+ + A K L EE + E
Sbjct: 87 IRKWREEQRKRLQE--------------LDAASKVMEQEWREKAKKDL-EEWNQRQSEQV 131
Query: 421 DEIQTKN 427
++ + N
Sbjct: 132 EKNKINN 138
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 30.8 bits (69), Expect = 1.8
Identities = 12/103 (11%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVE 336
++ + L G + I + + D + P+ P +
Sbjct: 61 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCC 120
Query: 337 KFASLVSN--SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCAS 377
+ ++ + + +HS G+ R+ + + Y++ S
Sbjct: 121 EIMEELTTCLKNYRKTLIHSYGGLGRSCLVAACLLLYLSDTIS 163
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 31.2 bits (69), Expect = 1.9
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 309 DDAILSGKVELIKIPVEVRTAPTMEQVEKFASLV----SNSSKKPLYLHSKEGVWRTYAM 364
D+ V + I PT+ + KF ++ + +HSK G RT +
Sbjct: 79 DETKFDNHVYRVMIDD--HNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTL 136
Query: 365 VSRWRQYMARCAS 377
VS W + +
Sbjct: 137 VSSWLLEDGKFDT 149
>3iyu_X Outer capsid protein VP4; triple layered particle, NEAR atomic
resolution, double layered particle, de novo,
infectious, icosah virus; HET: NAG; 3.80A {Simian
rotavirus A} PDB: 1kri_A
Length = 776
Score = 30.0 bits (67), Expect = 4.6
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 258 DDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERV--KDNFYEAAIDDAILSG 315
DDI++ + R Q++ L ++ + + + RA RV D +EA D +
Sbjct: 634 DDISAAVLKTKIDRSTQISPNTLPDIVTEASEKFIPNRAYRVINNDEVFEAGTDGRFFAY 693
Query: 316 KVE-LIKIPVEVRTAPTMEQVEKFASLVSNS 345
+VE +IP +V +KFA LV++S
Sbjct: 694 RVETFDEIPFDV---------QKFADLVTDS 715
>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural
GE protein structure initiative; 2.30A {Streptococcus
pneumoniae}
Length = 244
Score = 29.6 bits (66), Expect = 4.7
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 641 VVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTP----RTVLVL 696
++ +RK E F + T G E ES+ T + L+ + P R V
Sbjct: 15 TLKANNRKLNETFYIETLGMKALLE---ESAFLSLGDQTGLEKLVLEEAPSMRTRKVEGR 71
Query: 697 KKPGPALM--EEAKEVASFLYHQEKMNIL 723
KK ++ E E+ L + ++ L
Sbjct: 72 KKLARLIVKVENPLEIEGILSKTDSIHRL 100
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress
response, sigma factor, periplasm, membrane,
transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A
2v43_A 2v42_A
Length = 295
Score = 28.9 bits (64), Expect = 9.0
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 924 DSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSL 983
+S R D+ + DG RR+ + RG+ + F P D D SL
Sbjct: 33 ESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLE-PFTLNGDYIVDSLPSL 91
Query: 984 VR 985
+
Sbjct: 92 IY 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,951,855
Number of extensions: 909827
Number of successful extensions: 2049
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2007
Number of HSP's successfully gapped: 41
Length of query: 998
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 895
Effective length of database: 3,825,930
Effective search space: 3424207350
Effective search space used: 3424207350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)