Query 001900
Match_columns 998
No_of_seqs 243 out of 1432
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 11:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06464 phosphoenolpyruvate s 100.0 8.5E-49 1.8E-53 478.8 29.7 292 678-998 4-334 (795)
2 PRK06241 phosphoenolpyruvate s 100.0 7.5E-48 1.6E-52 476.4 28.9 281 679-998 3-312 (871)
3 TIGR01418 PEP_synth phosphoeno 100.0 1.3E-47 2.8E-52 468.7 29.8 291 680-998 1-332 (782)
4 PF01326 PPDK_N: Pyruvate phos 100.0 2.8E-48 6.1E-53 433.5 8.0 273 689-998 3-303 (327)
5 PRK05878 pyruvate phosphate di 100.0 2E-39 4.4E-44 379.4 21.8 245 677-997 5-297 (530)
6 COG0574 PpsA Phosphoenolpyruva 100.0 8.8E-37 1.9E-41 372.3 17.6 281 680-997 4-320 (740)
7 TIGR01828 pyru_phos_dikin pyru 100.0 3.6E-35 7.9E-40 360.1 21.7 245 679-997 2-337 (856)
8 PRK09279 pyruvate phosphate di 100.0 5.2E-32 1.1E-36 331.4 26.1 231 689-997 21-343 (879)
9 PRK05849 hypothetical protein; 99.9 1.5E-25 3.3E-30 272.2 18.1 196 689-998 5-216 (783)
10 PLN02784 alpha-amylase 99.0 3.6E-10 7.7E-15 138.0 6.5 72 1-74 135-209 (894)
11 PLN02784 alpha-amylase 98.9 1.4E-09 3E-14 132.9 6.6 71 1-76 324-395 (894)
12 PRK05849 hypothetical protein; 96.3 0.032 6.9E-07 70.1 13.2 175 460-641 571-780 (783)
13 PRK08296 hypothetical protein; 96.1 0.0053 1.1E-07 74.9 4.8 96 541-643 504-601 (603)
14 PF00391 PEP-utilizers: PEP-ut 95.5 0.0087 1.9E-07 54.4 2.5 69 565-637 8-78 (80)
15 PRK06241 phosphoenolpyruvate s 95.2 0.02 4.4E-07 73.1 5.3 93 542-643 773-868 (871)
16 PRK05865 hypothetical protein; 93.8 0.072 1.6E-06 67.8 5.4 94 542-644 741-837 (854)
17 TIGR01418 PEP_synth phosphoeno 93.6 0.063 1.4E-06 67.9 4.5 92 540-638 358-451 (782)
18 PRK05878 pyruvate phosphate di 93.6 0.063 1.4E-06 64.9 4.2 96 539-641 353-451 (530)
19 PRK06354 pyruvate kinase; Prov 93.4 0.059 1.3E-06 65.9 3.6 94 541-641 487-582 (590)
20 PRK06464 phosphoenolpyruvate s 93.1 0.061 1.3E-06 68.1 3.1 97 540-643 360-461 (795)
21 PRK09279 pyruvate phosphate di 93.0 0.071 1.5E-06 67.9 3.6 101 541-644 399-510 (879)
22 TIGR01828 pyru_phos_dikin pyru 92.2 0.11 2.4E-06 66.3 3.7 102 540-644 392-504 (856)
23 COG3848 Phosphohistidine swive 89.8 0.97 2.1E-05 43.4 6.6 96 540-643 6-104 (111)
24 PRK03955 hypothetical protein; 88.7 2.4 5.2E-05 42.6 8.9 96 540-643 6-128 (131)
25 PRK11377 dihydroxyacetone kina 87.9 0.55 1.2E-05 56.4 4.5 74 565-642 394-470 (473)
26 PRK11177 phosphoenolpyruvate-p 86.1 0.6 1.3E-05 57.4 3.6 78 565-646 152-232 (575)
27 TIGR01417 PTS_I_fam phosphoeno 83.1 0.94 2E-05 55.6 3.5 76 565-645 151-230 (565)
28 PRK11061 fused phosphoenolpyru 80.7 1.1 2.4E-05 56.8 2.9 77 565-647 319-399 (748)
29 PF03423 CBM_25: Carbohydrate 79.3 3 6.5E-05 38.7 4.6 34 38-72 52-86 (87)
30 COG3605 PtsP Signal transducti 76.5 4 8.6E-05 49.7 5.6 114 520-645 288-405 (756)
31 COG1080 PtsA Phosphoenolpyruva 72.6 3.8 8.2E-05 49.9 4.2 78 565-646 153-233 (574)
32 COG0574 PpsA Phosphoenolpyruva 68.2 2.3 4.9E-05 54.0 1.1 110 500-618 305-416 (740)
33 PF02786 CPSase_L_D2: Carbamoy 49.8 32 0.00069 37.1 5.8 44 948-996 131-178 (211)
34 COG5424 Pyrroloquinoline quino 39.0 37 0.00081 37.4 4.2 24 251-275 92-116 (242)
35 PF04190 DUF410: Protein of un 35.8 1.2E+02 0.0026 33.8 7.7 87 163-253 53-158 (260)
36 KOG2122 Beta-catenin-binding p 33.3 3E+02 0.0066 37.9 11.4 136 384-529 375-522 (2195)
37 KOG3021 Predicted kinase [Gene 33.2 38 0.00082 37.4 3.2 43 158-202 95-137 (313)
38 PF14475 Mso1_Sec1_bdg: Sec1-b 24.8 63 0.0014 26.4 2.3 20 230-249 14-33 (41)
No 1
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=8.5e-49 Score=478.81 Aligned_cols=292 Identities=25% Similarity=0.386 Sum_probs=239.8
Q ss_pred hhhcccccccC---cccchHHHHHHHHHHhcCC-CcccCCCcceeCHHHHHHHHHhhchHHHHHHHHHHHhhcCCCCHHH
Q 001900 678 GRYAITSDEFT---GELVGAKSRNIAYLKGKVP-SWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSA 753 (998)
Q Consensus 678 ~~~vl~l~e~~---~~~VGgKAanLa~L~~~~p-~g~~VP~GfvIPfgafe~~L~~~~n~~l~~~I~~l~~~l~~~d~~~ 753 (998)
.++++++.++. ...|||||+||++|++.++ .|++||+|||||+++|++||+.+ ++.+.|..++..++..++..
T Consensus 4 ~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~~ 80 (795)
T PRK06464 4 MKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVDA 80 (795)
T ss_pred CceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHHH
Confidence 45778877765 3679999999999998655 58999999999999999999988 77778888777777667654
Q ss_pred H----HHHHHHHHcCCCcHHHHHHHHHHHHccC----------------C--CCCCCCccc-------hHHHHHHHHHHH
Q 001900 754 L----REIRETVLQMKAPNQLVQELKTEMKSSG----------------M--PWPGDEGEQ-------RWEQAWMAIKKV 804 (998)
Q Consensus 754 L----~~IR~~I~~~~lP~eL~~eL~~a~~ssg----------------~--~~~g~~G~~-------~~e~L~~AIK~V 804 (998)
+ ++||++|++.++|+++.++|.++++..+ . +..+|+|++ +.+++.+|||+|
T Consensus 81 l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~v 160 (795)
T PRK06464 81 LAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKEC 160 (795)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHHH
Confidence 4 8999999999999999999999887432 1 234667775 479999999999
Q ss_pred HhcCCChHHHHHHHHcCCCcccccceeEEEEeeccC--eeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCceeEE
Q 001900 805 WASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFV 882 (998)
Q Consensus 805 WAS~fs~RA~~YRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~f~ 882 (998)
|||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++.++++|+++|||||+||+|.+ +||+|.
T Consensus 161 ~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~~ 239 (795)
T PRK06464 161 FASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEFY 239 (795)
T ss_pred HHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEEE
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999986 899999
Q ss_pred EecCCCC--CccccCCCCCccccccceeEEeecCCCCCccccccCCcccccccCchhhHhhhcccCCccCCcccchHHHH
Q 001900 883 CKKNDLK--YPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSIL 960 (998)
Q Consensus 883 v~k~~~~--~~~vl~~~sk~ig~~~~~~~i~~s~snGedle~~agaGl~~svpv~~~~~~~vdys~~p~LtD~~~r~~ll 960 (998)
++|.+.. .+.++ ++.++.+ ...+++. ..| +.|+ ..++++++.+ +.|+|+|++ +
T Consensus 240 v~~~~~~~~~~~i~---~~~i~~K-~~~~~~~--~~~-------~~~~-~~~~~~~~~~------~~~~L~~~~-----l 294 (795)
T PRK06464 240 VHKPTLKAGKPAIV---RRTLGSK-KIKMVYD--DGG-------EHGV-KTVDVPEEER------NRFSLTDEE-----V 294 (795)
T ss_pred Eeccccccccccee---eeecccc-ceeeeec--cCC-------CCce-eEEeCCHHHh------hccCCCHHH-----H
Confidence 9987632 01122 3444443 1222222 111 1222 3456665543 689999998 6
Q ss_pred HHHHHHHHHHHHHcCCceEEEEEEEC--CEEEEEeeccCC
Q 001900 961 SSIARAGCEIEELFGSAQDIEGVVRD--GKIYVVQTRPQM 998 (998)
Q Consensus 961 ~~La~la~~IE~~fG~PQDIEWai~~--g~LyILQsRP~v 998 (998)
++|++++.+||++||+|||||||+++ |+|||||+||++
T Consensus 295 ~~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPit 334 (795)
T PRK06464 295 LELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPET 334 (795)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeeccc
Confidence 99999999999999999999999987 999999999974
No 2
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=7.5e-48 Score=476.38 Aligned_cols=281 Identities=26% Similarity=0.421 Sum_probs=229.1
Q ss_pred hhcccccccC---cccchHHHHHHHHHHhcCCCcccCCCcceeCHHHHHHHHHhhchHHHHHHHHHHHhhcCCCCHHH--
Q 001900 679 RYAITSDEFT---GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSA-- 753 (998)
Q Consensus 679 ~~vl~l~e~~---~~~VGgKAanLa~L~~~~p~g~~VP~GfvIPfgafe~~L~~~~n~~l~~~I~~l~~~l~~~d~~~-- 753 (998)
++++++.++. ...|||||+||++|.+ .|++||+|||||+++|++||+.+ ++...|...+..++..+...
T Consensus 3 ~~v~~l~~~~~~~~~~vGgKa~~L~~L~~---~G~~VP~gfvi~~~~~~~~l~~~---~~~~~i~~~l~~~~~~~~~~~~ 76 (871)
T PRK06241 3 SYVLDFQEIDKTQLPLVGGKGANLGELSR---AGIPVPEGFCVTTEAYKKFLEQN---EEFDALLDQLSALKLEDREQIG 76 (871)
T ss_pred ceEEEhhhcCcccccccChHHHHHHHHHH---CCCCCCCeEEecHHHHHHHHHhC---CcHHHHHHHHhcCCCCCHHHHH
Confidence 4667777655 4679999999999999 78999999999999999999987 34444444444455445433
Q ss_pred --HHHHHHHHHcCCCcHHHHHHHHHHHHccCC---------------CCCCCCccc-------hHHHHHHHHHHHHhcCC
Q 001900 754 --LREIRETVLQMKAPNQLVQELKTEMKSSGM---------------PWPGDEGEQ-------RWEQAWMAIKKVWASKW 809 (998)
Q Consensus 754 --L~~IR~~I~~~~lP~eL~~eL~~a~~ssg~---------------~~~g~~G~~-------~~e~L~~AIK~VWAS~f 809 (998)
.++||++|++.++|+++.++|.+++..+|. +..+|+|++ +.+++++|||+||||+|
T Consensus 77 ~~~~~ir~~i~~~~~p~~l~~~l~~a~~~~~~~~~~aVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~~~~ai~~~waS~~ 156 (871)
T PRK06241 77 EISAKIREVIEAIEIPEDIVEAIAAALSKFGEDHAYAVRSSATAEDLPTASFAGQQDTYLNVIGKDAILQHIRKCWASLF 156 (871)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCccCCCCCCCccccccccCCCCHHHHHHHHHHHHHhcc
Confidence 379999999999999999999999875542 123567764 47999999999999999
Q ss_pred ChHHHHHHHHcCCCcccccceeEEEEeeccCeeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCceeEEEecCCCC
Q 001900 810 NERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLK 889 (998)
Q Consensus 810 s~RA~~YRr~~Gi~~~~v~MAVLVQemV~ad~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~f~v~k~~~~ 889 (998)
|+||+.||+++|++++++.|||+||+||++++|||+||+||.+++.+.++|+++|||||+||+|.+ +||+|++++ +
T Consensus 157 ~~ra~~Yr~~~g~~~~~~~maV~vQ~mv~~~~sGV~ft~~P~~~~~~~~~I~a~~GlGe~vV~G~v-~pd~~~v~~--~- 232 (871)
T PRK06241 157 TERAVIYRIQNGFDHRKVYMSVVVQKMVFPEASGIMFTADPVTGNRKVLSIDASFGLGEALVSGLV-SADTYKVRE--G- 232 (871)
T ss_pred CHHHHHHHHHcCCCchhcceEEEEEeccccccceEEEecCCCCCCCCEEEEEEecCCChhhhcCcc-CCeEEEEeC--C-
Confidence 999999999999999999999999999999999999999999999999999999999999999998 899999982 2
Q ss_pred CccccCCCCCccccccceeEEeecCCCCCccccccCCcccccccCchhhHhhhcccCCccCCcccchHHHHHHHHHHHHH
Q 001900 890 YPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCE 969 (998)
Q Consensus 890 ~~~vl~~~sk~ig~~~~~~~i~~s~snGedle~~agaGl~~svpv~~~~~~~vdys~~p~LtD~~~r~~ll~~La~la~~ 969 (998)
.++ ++.++.|. ..++... ++|+ ..++++... .+.|+|++++ +++|+++|.+
T Consensus 233 --~i~---~~~i~~k~--~~~~~~~----------~gg~-~~~~~~~~~------~~~~~L~~~~-----~~~L~~l~~~ 283 (871)
T PRK06241 233 --KII---DKTIATKK--LAIYALK----------EGGT-ETKEIEPEQ------QKSQTLTDEQ-----ILELARLGRK 283 (871)
T ss_pred --ceE---EEeccccc--eEEEecC----------CCce-EEEECCHHH------hcCCCCCHHH-----HHHHHHHHHH
Confidence 222 34444431 1122221 2343 344555443 3679999988 6999999999
Q ss_pred HHHHcCCceEEEEEEECCEEEEEeeccCC
Q 001900 970 IEELFGSAQDIEGVVRDGKIYVVQTRPQM 998 (998)
Q Consensus 970 IE~~fG~PQDIEWai~~g~LyILQsRP~v 998 (998)
||++||+|||||||+++|+|||||+||++
T Consensus 284 ie~~~g~pqDIEw~~~~~~l~ilQaRPit 312 (871)
T PRK06241 284 IEAHFGCPQDIEWCLADGTFYILQSRPIT 312 (871)
T ss_pred HHHHcCCCcceEEEEECCEEEEEEcCCcc
Confidence 99999999999999999999999999984
No 3
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=100.00 E-value=1.3e-47 Score=468.68 Aligned_cols=291 Identities=27% Similarity=0.428 Sum_probs=234.5
Q ss_pred hcccccccC---cccchHHHHHHHHHHhcC-CCcccCCCcceeCHHHHHHHHHhhchHHHHHHHHHHHhhcCCCCHHHH-
Q 001900 680 YAITSDEFT---GELVGAKSRNIAYLKGKV-PSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSAL- 754 (998)
Q Consensus 680 ~vl~l~e~~---~~~VGgKAanLa~L~~~~-p~g~~VP~GfvIPfgafe~~L~~~~n~~l~~~I~~l~~~l~~~d~~~L- 754 (998)
+++++.++. ...|||||+||++|++.+ ..|++||+|||||+++|++||+.+ ++.+.|..+++.++..+++.+
T Consensus 1 ~~~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~~~~~l~ 77 (782)
T TIGR01418 1 LILWLEEVRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEEN---GIAQKIRDLLEELDVEDSEALA 77 (782)
T ss_pred CeeehhhcCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHhC---ChHHHHHHHHHhcCcCCHHHHH
Confidence 356666665 367999999999999732 248999999999999999999987 777778777776666665443
Q ss_pred ---HHHHHHHHcCCCcHHHHHHHHHHHHccC----------------C----CCCCCCccc-------hHHHHHHHHHHH
Q 001900 755 ---REIRETVLQMKAPNQLVQELKTEMKSSG----------------M----PWPGDEGEQ-------RWEQAWMAIKKV 804 (998)
Q Consensus 755 ---~~IR~~I~~~~lP~eL~~eL~~a~~ssg----------------~----~~~g~~G~~-------~~e~L~~AIK~V 804 (998)
++||++|++.++|+++.++|.+++.+.+ . +..+|+|++ +.+++.+|||+|
T Consensus 78 ~~~~~ir~~i~~~~lP~~l~~~l~~a~~~l~~~~g~~~~~vaVRSSa~~ED~~~~SfAGq~~s~l~v~~~~~l~~aik~v 157 (782)
T TIGR01418 78 AASAEIRELILNTPFPPDLEEAIREAYDKLSEDYGKEEADVAVRSSATAEDLPDASFAGQQETYLNVTGEEEVLEHVKKC 157 (782)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcCCcCceEEEECCCCCCCCCCCCcccceeeeecCCCHHHHHHHHHHH
Confidence 7999999999999999999998876421 1 123567764 379999999999
Q ss_pred HhcCCChHHHHHHHHcCCCcccccceeEEEEeeccC--eeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCceeEE
Q 001900 805 WASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFV 882 (998)
Q Consensus 805 WAS~fs~RA~~YRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~f~ 882 (998)
|||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++++.++|+++|||||.||+|.+ +||+|.
T Consensus 158 ~aS~~~~rA~~Yr~~~g~~~~~~~maVlVQ~mv~~~~~~SGV~fT~~P~~g~~~~~~I~a~~GlGe~vV~G~v-~pD~~~ 236 (782)
T TIGR01418 158 WASLFTDRAISYRVSQGFDHEKVAIAVGVQKMVRSDLGSSGVMFTIDTETGFKDAVFIESAWGLGEAVVGGAV-TPDEYV 236 (782)
T ss_pred HHccCCHHHHHHHHHcCCChhhhCeeEEEEEcccCCCCceeEEEecCCCCCCCCeEEEEEccCCCcccccCCc-CCeEEE
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999986 899999
Q ss_pred EecCCCCC--ccccCCCCCccccccceeEEeecCCCCCccccccCCcccccccCchhhHhhhcccCCccCCcccchHHHH
Q 001900 883 CKKNDLKY--PRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSIL 960 (998)
Q Consensus 883 v~k~~~~~--~~vl~~~sk~ig~~~~~~~i~~s~snGedle~~agaGl~~svpv~~~~~~~vdys~~p~LtD~~~r~~ll 960 (998)
++|.+... ..++ ++.++.+ +..+++ +..| +.+.....+++++.+ ++|+|+|++ +
T Consensus 237 v~r~~~~~~~~~i~---~~~~~~k-~~~~~~--~~~g-------~~~~~~~~~~~~~~~------~~~~L~~~~-----l 292 (782)
T TIGR01418 237 VFKPTLEQGKKAIL---ERTLGSK-KIKMVY--DPDG-------GNVETKIVEVPEEER------DAFSLSDEE-----I 292 (782)
T ss_pred Eeccccccccccee---eeecccc-ceEEEE--ccCC-------CCcceEEEeCCHHHh------hccCCCHHH-----H
Confidence 99876320 0122 3444443 122232 2111 111233456665443 679999998 6
Q ss_pred HHHHHHHHHHHHHcCCceEEEEEEE--CCEEEEEeeccCC
Q 001900 961 SSIARAGCEIEELFGSAQDIEGVVR--DGKIYVVQTRPQM 998 (998)
Q Consensus 961 ~~La~la~~IE~~fG~PQDIEWai~--~g~LyILQsRP~v 998 (998)
++|++++.+||++||+|||||||++ +|+|||||+||++
T Consensus 293 ~~La~l~~~lE~~fg~pqDIEWa~~~~~g~l~iLQaRPit 332 (782)
T TIGR01418 293 LELAKLAVLIEKHYGRPMDIEWAKDGFDGEIFIVQARPET 332 (782)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEECCCCeEEEEEeeccc
Confidence 9999999999999999999999999 8999999999974
No 4
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=100.00 E-value=2.8e-48 Score=433.48 Aligned_cols=273 Identities=33% Similarity=0.517 Sum_probs=195.7
Q ss_pred cccchHHHHHHHHHHhcCCCcccCCCcceeCHHHHHHHHHhhchHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHcC
Q 001900 689 GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEED----HSALREIRETVLQM 764 (998)
Q Consensus 689 ~~~VGgKAanLa~L~~~~p~g~~VP~GfvIPfgafe~~L~~~~n~~l~~~I~~l~~~l~~~d----~~~L~~IR~~I~~~ 764 (998)
...|||||+||++|++ .+++||+|||||+++|++||+++ ++.+.+..+.+.+...+ .+..++||++|++.
T Consensus 3 ~~~vGgKa~~L~~L~~---~g~~VP~gfvIt~~~~~~~l~~~---~l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 76 (327)
T PF01326_consen 3 ASLVGGKAANLAELRR---AGVPVPPGFVITTDAFQEFLESN---GLREEIEQLLEPLDLSDREDLQAISKEIRELILSA 76 (327)
T ss_dssp HHHHHHHHHHHHHHHH---TT-S---EEEE-HHHHHHHHTTC---CHHHHHHHHHHBE-EEEEEECSSHHTTCCHEEEEE
T ss_pred hHHCCHHHHHHHHHHH---CCCCCCcEEEecHHHHHHHHHcC---ChHHHHHHHHhhhccccHHHHHHHHHHHHHHHHhC
Confidence 4568999999999997 78999999999999999999887 68888888766443222 23568999999999
Q ss_pred CCcHHHHHHHHHHHHccC---CC-------------CCCCCccc-------hHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 001900 765 KAPNQLVQELKTEMKSSG---MP-------------WPGDEGEQ-------RWEQAWMAIKKVWASKWNERAFFSTRRVK 821 (998)
Q Consensus 765 ~lP~eL~~eL~~a~~ssg---~~-------------~~g~~G~~-------~~e~L~~AIK~VWAS~fs~RA~~YRr~~G 821 (998)
++|+++.++|.+++.+.+ .+ ..+|+|.+ ..++|++|||+||||+|++||+.||+++|
T Consensus 77 ~lp~~~~~~l~~~~~~~~~~~~~~aVRSSa~~ED~~~~sfAG~~~s~l~v~~~~~l~~Aik~v~aS~f~~ra~~yr~~~g 156 (327)
T PF01326_consen 77 PLPEELVEELEAALEELGQRDQPLAVRSSATSEDGAEASFAGQYDSVLNVPGEEELLEAIKQVWASLFSPRALAYRRRRG 156 (327)
T ss_dssp T--HHHHHHHHHHHTHHHHHHHHCCCEECE-HHHHH-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcccccccceEEEeccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHHhCcCCHHHHHHHHhcC
Confidence 999999999999976531 11 11344543 35999999999999999999999999999
Q ss_pred CCcccccceeEEEEeeccCeeEEEEeCCCCCCCCCe-EEEEEeccCCccccccccCCceeEEEecCCCCCccccCCCCCc
Q 001900 822 LDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSE-IYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKP 900 (998)
Q Consensus 822 i~~~~v~MAVLVQemV~ad~SGVlfT~nP~tgd~~~-i~Ieav~GLGE~LVsG~~Gtpd~f~v~k~~~~~~~vl~~~sk~ 900 (998)
++++++.|||+||+||++++|||+||+||.+|+++. ++||+++||||.+|+|.+ +|++|++++.+.. +. .+.
T Consensus 157 ~~~~~~~maVlVQ~mv~~~~sGV~fT~~p~~g~~~~~~~i~~~~Glge~vV~G~~-~~d~~~v~~~~~~---~~---~~~ 229 (327)
T PF01326_consen 157 IPDEDVGMAVLVQPMVDAEASGVAFTRNPITGEPNEDIVIEAVWGLGESVVSGEV-TPDSFIVSRSDPR---IR---ERE 229 (327)
T ss_dssp -TTS---EEEEEEE---TTEEEEEESS-TTT--SSEEEEEEEESS-CHHHHHTSS---EECCC--EHHH---HH---EEE
T ss_pred CChhHhCceeEEEEEecCcceeEEEeeCCCCCCCCcceEEEEccCCCcccccCCC-CCcEEEEEcCCcc---hh---hhh
Confidence 999999999999999999999999999999999998 999999999999999987 8999999875531 11 122
Q ss_pred cccccceeEEeecCCCCCccccccCCcccccccCchhhHhhhcccCCccCCcccchHHHHHHHHHHHHHHHHHcCCceEE
Q 001900 901 IGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDI 980 (998)
Q Consensus 901 ig~~~~~~~i~~s~snGedle~~agaGl~~svpv~~~~~~~vdys~~p~LtD~~~r~~ll~~La~la~~IE~~fG~PQDI 980 (998)
++.+ ...+... .++|+ ..++++.. +...++|++++ +++|++++.+||++||+||||
T Consensus 230 ~~~k---~~~~~~~---------~~~~~-~~~~~~~~------~~~~~~l~~~~-----~~~L~~l~~~le~~~g~p~DI 285 (327)
T PF01326_consen 230 IGQK---SVQLVPD---------EGGGL-EEVDVPEE------RQDSPSLSDEQ-----LQQLAELARKLEEHFGRPQDI 285 (327)
T ss_dssp -------HCCCCCC---------CTTTE-ECCCHHHH------CHCHHHHSHHH-----HHHHHHHHHHHHHHHTS-EEE
T ss_pred cCCc---eEEEEEc---------CCCce-EEEeCchh------hhhhhhcCHHH-----HHHHHHHHHHHHHHcCCCeEE
Confidence 2221 1111111 23443 34444432 33678888877 799999999999999999999
Q ss_pred EEEEECCEEEEEeeccCC
Q 001900 981 EGVVRDGKIYVVQTRPQM 998 (998)
Q Consensus 981 EWai~~g~LyILQsRP~v 998 (998)
|||+++|+|||||+||++
T Consensus 286 Ew~~~~~~l~iLQaRPi~ 303 (327)
T PF01326_consen 286 EWAIDGGQLYILQARPIT 303 (327)
T ss_dssp EEEEETTEEEEEEEEE--
T ss_pred EEEEECCEEEEEEecccc
Confidence 999999999999999974
No 5
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=2e-39 Score=379.45 Aligned_cols=245 Identities=23% Similarity=0.266 Sum_probs=192.7
Q ss_pred hhhhcccccccCc---ccchHHHHHHHHHHhcCCCcccCCCcceeCHHHHHHHHHhhc--hHHHHHHHHHHHhhcCCC--
Q 001900 677 AGRYAITSDEFTG---ELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNI--NQAVAEKLQILKQKLGEE-- 749 (998)
Q Consensus 677 ~~~~vl~l~e~~~---~~VGgKAanLa~L~~~~p~g~~VP~GfvIPfgafe~~L~~~~--n~~l~~~I~~l~~~l~~~-- 749 (998)
..++++++++... +++|||++||++|++ .++|||+|||||+.+|++|++.+. .++++++|...++.++..
T Consensus 5 ~~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~g 81 (530)
T PRK05878 5 LENAVVLLDGGANQPRELLGGKGHGIDMMRR---LGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAETG 81 (530)
T ss_pred cCceEEECCCCChhhhhccCHHHHhHHHHHH---CCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhh
Confidence 3568888887654 689999999999998 689999999999999999998763 345776666655433211
Q ss_pred -------CHH----------HHHHHHHHHHcCCCcHHHHHHHHHHHHccCC-CC-----CCCCcc-------------ch
Q 001900 750 -------DHS----------ALREIRETVLQMKAPNQLVQELKTEMKSSGM-PW-----PGDEGE-------------QR 793 (998)
Q Consensus 750 -------d~~----------~L~~IR~~I~~~~lP~eL~~eL~~a~~ssg~-~~-----~g~~G~-------------~~ 793 (998)
++. .+.-+++.|+++.+|+++.++|.+.. |. .+ ..|.|+ ..
T Consensus 82 ~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~---g~~~~a~D~~~rF~~~y~~vv~~~~~~p~dp 158 (530)
T PRK05878 82 RTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEG---GDPDFAADTRRRFTEMYRRIVGSGSPPPDDP 158 (530)
T ss_pred hccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhc---CCchhhhhhhhhHHHHHHHHhccCCCCCCCh
Confidence 221 11238999999999999999997632 21 11 112121 13
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHcCCCcccccceeEEEEeeccC-----eeEEEEeCCCCCCCCCeEEEEEeccCCc
Q 001900 794 WEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD-----YAFVIHTTNPSSGDSSEIYAEVVKGLGE 868 (998)
Q Consensus 794 ~e~L~~AIK~VWAS~fs~RA~~YRr~~Gi~~~~v~MAVLVQemV~ad-----~SGVlfT~nP~tgd~~~i~Ieav~GLGE 868 (998)
+++|..|||.||+|+||+||+.||+++|++++. .|||+||+||.++ .|||+||+||.+|++..+.+.+++|+||
T Consensus 159 ~~qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~~-~mAV~VQ~MV~g~~~~~s~sGV~FT~dP~tg~~~~~~~~~~~GlGe 237 (530)
T PRK05878 159 YEQLRAAIEAVFASWNSPRAVAYRRHHGLDDDG-GTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGE 237 (530)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCCccc-CcEEEEEeCccCCCCCCcceEEEEeCCCCCCCCcEEEEEcCCCCCH
Confidence 689999999999999999999999999999755 8999999999765 4799999999999988888888999999
Q ss_pred cccccccCCceeEEEecCCCCCccccCCCCCccccccceeEEeecCCCCCccccccCCcccccccCchhhHhhhcccCCc
Q 001900 869 TLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDR 948 (998)
Q Consensus 869 ~LVsG~~Gtpd~f~v~k~~~~~~~vl~~~sk~ig~~~~~~~i~~s~snGedle~~agaGl~~svpv~~~~~~~vdys~~p 948 (998)
.||+|.+ +|+.|.+.+. ..|
T Consensus 238 ~vVsG~~-~p~~~~~~~~-----------------------------------------------------------~~p 257 (530)
T PRK05878 238 DVVSGLV-DVAPITALRD-----------------------------------------------------------EQP 257 (530)
T ss_pred HHhcCCc-CCcchhhhcc-----------------------------------------------------------cCH
Confidence 9999975 4543332110 001
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHcCCceEEEEEEECCEEEEEeeccC
Q 001900 949 LITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ 997 (998)
Q Consensus 949 ~LtD~~~r~~ll~~La~la~~IE~~fG~PQDIEWai~~g~LyILQsRP~ 997 (998)
..+++|++++.+||++||.||||||+|++|+|||||+||.
T Consensus 258 ---------~~~~eL~~~a~~LE~~fg~pqDIEfai~~g~L~iLQaRp~ 297 (530)
T PRK05878 258 ---------AVYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSA 297 (530)
T ss_pred ---------HHHHHHHHHHHHHHHHcCCceeEEEEEECCEEEEEEeecc
Confidence 1268999999999999999999999999999999999995
No 6
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.8e-37 Score=372.30 Aligned_cols=281 Identities=26% Similarity=0.401 Sum_probs=224.3
Q ss_pred hcccccccC---cccchHHHHHHHHHHhcCCCcccCCCcceeCHHHHHHHHHhhchHHHHHHHHHHHhhcCCCCHHHH--
Q 001900 680 YAITSDEFT---GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSAL-- 754 (998)
Q Consensus 680 ~vl~l~e~~---~~~VGgKAanLa~L~~~~p~g~~VP~GfvIPfgafe~~L~~~~n~~l~~~I~~l~~~l~~~d~~~L-- 754 (998)
++.++.+.+ ..++|||++||++|.+ .|++||+|||||+.+|..|++.+ ++.+.+.+.+..++..+...+
T Consensus 4 ~~~~~~e~~~~~~~lvGgKga~L~Em~~---~Gl~VP~GF~itt~a~~~f~~~~---~~~~~~~~~l~~~~~~~~~~l~~ 77 (740)
T COG0574 4 LILWLDEVKLEDVGLVGGKGASLGEMLK---MGLPVPPGFAITSEAYRYFLKEN---GLADKILKILSALDLNDNVELEF 77 (740)
T ss_pred cccchhhcCcchhhhcCCccCCHHHHHh---CCCCCCCeEEEeHHHHHHHHhcc---chHHHHHHHhcCCCcchhHHHHH
Confidence 344555433 4899999999999999 79999999999999999999988 777777777766554443333
Q ss_pred --HHHHHHHHcCCCcHHHHHHHHHHHHcc---C----------------CCCCCCCccc-------hHHHHHHHHHHHHh
Q 001900 755 --REIRETVLQMKAPNQLVQELKTEMKSS---G----------------MPWPGDEGEQ-------RWEQAWMAIKKVWA 806 (998)
Q Consensus 755 --~~IR~~I~~~~lP~eL~~eL~~a~~ss---g----------------~~~~g~~G~~-------~~e~L~~AIK~VWA 806 (998)
..++..|+..++|+++.+++.+++... + .+.++|+|++ ..++++.+|++|||
T Consensus 78 ~~~~~~~~i~~~~~p~~l~~ei~~al~~~~~~~~~~~~~avrss~taedL~~~sFagq~~t~lni~~~e~l~~~i~~~~a 157 (740)
T COG0574 78 RSELIRPLIMPTPLPEDLSAEIAEALEELTGYGDSDADVAVRSSATAEDLPGASFAGQQETYLNVDGIEDLLEAIKKCWA 157 (740)
T ss_pred HHHHHHhhhccCCCChHHHHHHHHHHHHhccccccceeEEEeeccccccCCcccccccccccCCcCCHHHHHHHHHHHHH
Confidence 689999999999999999999998763 1 1334677753 57999999999999
Q ss_pred cCCChHHHHHHHHcCCCcccccceeEEEEeeccC--eeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCceeEEEe
Q 001900 807 SKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCK 884 (998)
Q Consensus 807 S~fs~RA~~YRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~f~v~ 884 (998)
|+||+||+.||.++|+++..+.|||+||+||.++ .|||+||+||.||..+.+.++++|||||.+|+|.+ +||.|.+.
T Consensus 158 Sl~~~RAi~Yr~~~~~~~~~~~laV~VQ~MV~~~~~~sGV~FT~~P~tg~~~~~~i~~~~glGE~vV~G~v-tpd~~~~~ 236 (740)
T COG0574 158 SLFVDRAIAYRYHNGIDHSELGLAVVVQKMVFSDLGESGVMFTIDPITGERDVVVIESSWGLGEDVVDGQV-TPDEYYVS 236 (740)
T ss_pred hhcchhHHHHHHHcCCcchhhceEEEEeeeeccCCCceeEEEecCCccCCcceEEEEccccCccceEEEEE-cCceEEEe
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999998 99999999
Q ss_pred cCCCCCccccCCCCCccccccceeEEeecCCCCCccccccCCcc-cccccCchhhHhhhcccCCccCCcccchHHHHHHH
Q 001900 885 KNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGL-YDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSI 963 (998)
Q Consensus 885 k~~~~~~~vl~~~sk~ig~~~~~~~i~~s~snGedle~~agaGl-~~svpv~~~~~~~vdys~~p~LtD~~~r~~ll~~L 963 (998)
|+.. ... ..+++. ..+++.... +.+. .+..+++... ....+++|.. +.+|
T Consensus 237 k~~~-~~~--~~~~~~------~~~i~~~~~---------~e~~~~~~~ev~~~~------~~~~~l~~~~-----i~~l 287 (740)
T COG0574 237 KDTL-VEK--ALPSKL------IKLIYDADK---------LEGHRARIEEIEDEF------TDAFSLSDEE-----IKRL 287 (740)
T ss_pred ccch-hhh--hhhHHH------HHHHHHhhc---------ccceeeeeccCChHH------hhhhhccHHH-----HHHH
Confidence 9753 000 112221 122222211 1111 1222333221 2456777776 7999
Q ss_pred HHHHHHHHHHcCCceEEEEEEECCEEEEEeeccC
Q 001900 964 ARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ 997 (998)
Q Consensus 964 a~la~~IE~~fG~PQDIEWai~~g~LyILQsRP~ 997 (998)
++++.+||.+|+.||||||++++ ++||+|+||.
T Consensus 288 a~~~~~ie~~~~~p~diEw~id~-~~~ilq~rP~ 320 (740)
T COG0574 288 AKLAIKIEKHYGRPMDIEWAIDG-KLYILQARPE 320 (740)
T ss_pred HHHHHHHHHhhCCchhhhhhhcC-ceEEEEecCc
Confidence 99999999999999999999998 9999999996
No 7
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=100.00 E-value=3.6e-35 Score=360.08 Aligned_cols=245 Identities=22% Similarity=0.304 Sum_probs=188.1
Q ss_pred hhcccccccCc---ccchHHHHHHHHHHhcCCCcccCCCcceeCHHHHHHHHHhhc--hHHHHHHHHHHHhhcC------
Q 001900 679 RYAITSDEFTG---ELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNI--NQAVAEKLQILKQKLG------ 747 (998)
Q Consensus 679 ~~vl~l~e~~~---~~VGgKAanLa~L~~~~p~g~~VP~GfvIPfgafe~~L~~~~--n~~l~~~I~~l~~~l~------ 747 (998)
++++++++.+. .++|||++||++|.+ .++|||+||+||+.+|+.|++.+. ..+++++|....+.++
T Consensus 2 ~~v~~~~~~~~~~~~~~GgK~a~L~em~~---~glpVPpGFviTt~a~~~~~~~~~~~~~~l~~~i~~~~~~le~~~g~~ 78 (856)
T TIGR01828 2 KRVYAFGEGNASMKNLLGGKGANLAEMTK---LGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTGKK 78 (856)
T ss_pred CeEEECCCCCchhhhhcCHHHHhHHHHHh---CCCCCCCcEEEeHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHhCcc
Confidence 35777777653 689999999999998 689999999999999999999873 3457666666554433
Q ss_pred ---CCCHH----------HHHHHHHHHHcCCCcHHHHHHHHH-------HHHcc-------C-----CC---C-------
Q 001900 748 ---EEDHS----------ALREIRETVLQMKAPNQLVQELKT-------EMKSS-------G-----MP---W------- 785 (998)
Q Consensus 748 ---~~d~~----------~L~~IR~~I~~~~lP~eL~~eL~~-------a~~ss-------g-----~~---~------- 785 (998)
..++. .+..+++.|+++.+|++++++|.+ ++++. | .+ |
T Consensus 79 fg~~~~PllvsvrS~a~~smpgm~~tiLn~glnd~~~~~l~~~~g~~~fa~d~yrRfi~~~g~vvl~v~~~~f~~~~~~~ 158 (856)
T TIGR01828 79 FGDTENPLLVSVRSGAAVSMPGMMDTILNLGLNDETVEGLAKLTGNARFAYDSYRRFIQMFGDVVLGIPHELFEQILEAM 158 (856)
T ss_pred cCCCCCcceEEeccCCCCCCccHHHHHHhCCCCHHHHHHHHHhhCChHHHHHHHHHHHhhhcccccCCCchhHHHHHHHH
Confidence 12221 123799999999999999999987 43321 1 11 0
Q ss_pred ---------CC------------CCcc-----------chHHHHHHHHHHHHhcCCChHHHHHHHHcCCCcccccceeEE
Q 001900 786 ---------PG------------DEGE-----------QRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLV 833 (998)
Q Consensus 786 ---------~g------------~~G~-----------~~~e~L~~AIK~VWAS~fs~RA~~YRr~~Gi~~~~v~MAVLV 833 (998)
.+ |.|+ ..+++|..||+.||||+||+||+.||+.+|++++ ..|||+|
T Consensus 159 ~~~~~~~~d~~~s~~~~~~l~~~f~~~~~~~~g~~f~~~p~~qL~~Ai~~V~aS~~s~rA~~YR~~~gi~~~-~~~aV~V 237 (856)
T TIGR01828 159 KEEKGVKLDTDLTADDLKELIEKYKAIYREATGKPFPQDPKEQLELAIKAVFDSWNNPRAIVYRRLNDIPED-WGTAVNI 237 (856)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCChHHHHHHHhcCCCcc-cCcEEEE
Confidence 00 1111 1368999999999999999999999999999987 8999999
Q ss_pred EEeeccC-----eeEEEEeCCCCCCCCCeEEEEEe-ccCCccccccccCCceeEEEecCCCCCccccCCCCCccccccce
Q 001900 834 QEIINAD-----YAFVIHTTNPSSGDSSEIYAEVV-KGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRR 907 (998)
Q Consensus 834 QemV~ad-----~SGVlfT~nP~tgd~~~i~Ieav-~GLGE~LVsG~~Gtpd~f~v~k~~~~~~~vl~~~sk~ig~~~~~ 907 (998)
|+||.++ .|||+||+||.||.+. +++++. .|+||.+|+|.+ +|+.|...
T Consensus 238 Q~MV~g~~~~~s~SGV~FTrdP~tg~~~-~~g~~~i~a~ge~vVsG~~-tp~~~~~~----------------------- 292 (856)
T TIGR01828 238 QSMVFGNMGETSGTGVAFTRNPSTGEKG-LFGEFLINAQGEDVVAGIR-TPQPITAM----------------------- 292 (856)
T ss_pred EEeecCCCCCCceeEEEEeCCCCCCCCc-ceEEEEEcCCCchhccccc-CcHHHHHh-----------------------
Confidence 9999765 6899999999999763 666655 489999999865 33322110
Q ss_pred eEEeecCCCCCccccccCCcccccccCchhhHhhhcccCCccCCcccchHHHHHHHHHHHHHHHHHcCCceEEEEEEECC
Q 001900 908 SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDG 987 (998)
Q Consensus 908 ~~i~~s~snGedle~~agaGl~~svpv~~~~~~~vdys~~p~LtD~~~r~~ll~~La~la~~IE~~fG~PQDIEWai~~g 987 (998)
. .+.++ .+++|++++.+||++||.|||||||+++|
T Consensus 293 ------------------------------~----------~~~p~-----~~~~L~~~a~~lE~~fg~pqDIEfai~~g 327 (856)
T TIGR01828 293 ------------------------------E----------ADMPD-----VYKELLDIAEKLEGHYRDMQDIEFTIERG 327 (856)
T ss_pred ------------------------------h----------hcChH-----HHHHHHHHHHHHHHHcCCcccceEEEECC
Confidence 0 00111 26899999999999999999999999999
Q ss_pred EEEEEeeccC
Q 001900 988 KIYVVQTRPQ 997 (998)
Q Consensus 988 ~LyILQsRP~ 997 (998)
+|||||+||.
T Consensus 328 ~L~iLQ~RP~ 337 (856)
T TIGR01828 328 KLYMLQTRNG 337 (856)
T ss_pred EEEEEEeecC
Confidence 9999999994
No 8
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=5.2e-32 Score=331.45 Aligned_cols=231 Identities=25% Similarity=0.412 Sum_probs=165.8
Q ss_pred cccchHHHHHHHHHHhcCCCcccCCCcceeCHHHHHHHHHhhc--hHHHHHHHHH----HHhhcC----CC-CH------
Q 001900 689 GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNI--NQAVAEKLQI----LKQKLG----EE-DH------ 751 (998)
Q Consensus 689 ~~~VGgKAanLa~L~~~~p~g~~VP~GfvIPfgafe~~L~~~~--n~~l~~~I~~----l~~~l~----~~-d~------ 751 (998)
.+++|||++||++|.+ .|+|||+||+||+.+|++|++.+. .++++.++.. +....+ .. +|
T Consensus 21 ~~llGgKga~L~em~~---~glpVPpgF~itt~ac~~~~~~~~~~~~~l~~~i~~~l~~lE~~~g~~fg~~~~PLLvSVR 97 (879)
T PRK09279 21 KDLLGGKGANLAEMTN---LGLPVPPGFTITTEACNEYYANGKKLPEGLKEEVKEALAKLEELTGKKFGDPENPLLVSVR 97 (879)
T ss_pred HhhcCHHHHhHHHHHH---CCCCCCCcEEEcHHHHHHHHhcCccCcHHHHHHHHHHHHHHHHHhCcccCCCCCceeEEEe
Confidence 4799999999999998 689999999999999999998752 3455544433 332211 00 00
Q ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHH---------------------------------------------------
Q 001900 752 ----SALREIRETVLQMKAPNQLVQELKT--------------------------------------------------- 776 (998)
Q Consensus 752 ----~~L~~IR~~I~~~~lP~eL~~eL~~--------------------------------------------------- 776 (998)
...--+.+.|+++-+.++.++.|.+
T Consensus 98 Sga~~SmPGmmdTiLNlGlnd~~~~~la~~tg~~~fa~d~yrRfiq~~~~vv~gi~~~~fe~~~~~~k~~~~~~~~~~l~ 177 (879)
T PRK09279 98 SGARVSMPGMMDTVLNLGLNDETVEGLAKKTGNERFAYDSYRRFIQMFGDVVLGIDHELFEEILEELKEKKGVKLDTDLT 177 (879)
T ss_pred cCCCCCCCCcchhhhcCCCCHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCCCccCCC
Confidence 0001122223333332222222221
Q ss_pred ---------HHH----c-cCCCCCCCCccchHHHHHHHHHHHHhcCCChHHHHHHHHcCCCcccccceeEEEEeeccC--
Q 001900 777 ---------EMK----S-SGMPWPGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD-- 840 (998)
Q Consensus 777 ---------a~~----s-sg~~~~g~~G~~~~e~L~~AIK~VWAS~fs~RA~~YRr~~Gi~~~~v~MAVLVQemV~ad-- 840 (998)
.|+ . .|.++|.++ +++|..||+.||+|+||+||+.||+.+|++++ ..|||+||+||.++
T Consensus 178 ~~~l~~l~~~~k~~~~~~~g~~fp~dp----~~QL~~AI~aV~~S~~s~rA~~YR~~~gi~~~-~g~AV~VQ~MV~gn~~ 252 (879)
T PRK09279 178 AEDLKELVERYKEIVKEETGKPFPQDP----YEQLWGAIGAVFRSWNNPRAITYRRLNNIPED-WGTAVNVQAMVFGNMG 252 (879)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHHhhcChHHHHHHHhcCCCcc-cCceEEEEeccccCCC
Confidence 111 1 134445444 79999999999999999999999999999986 89999999999776
Q ss_pred ---eeEEEEeCCCCCCCCCeEEEEE-eccCCccccccccCCceeEEEecCCCCCccccCCCCCccccccceeEEeecCCC
Q 001900 841 ---YAFVIHTTNPSSGDSSEIYAEV-VKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSN 916 (998)
Q Consensus 841 ---~SGVlfT~nP~tgd~~~i~Iea-v~GLGE~LVsG~~Gtpd~f~v~k~~~~~~~vl~~~sk~ig~~~~~~~i~~s~sn 916 (998)
.|||+||+||.||++ .+++++ +.|+||.+|+|.+ +|+.|. .
T Consensus 253 ~~s~SGV~FTrdP~TG~~-~~~Ge~l~~aqGedVVsG~~-tp~~~~----~----------------------------- 297 (879)
T PRK09279 253 EDSGTGVAFTRNPSTGEK-KLYGEFLINAQGEDVVAGIR-TPQPIP----S----------------------------- 297 (879)
T ss_pred CCcceEEEEeCCCCCCCC-ceeEEEecCCCChhhhcCcc-CcchhH----H-----------------------------
Confidence 599999999999987 556666 4789999999875 443220 0
Q ss_pred CCccccccCCcccccccCchhhHhhhcccCCccCCcccchHHHHHHHHHHHHHHHHHcCCceEEEEEEECCEEEEEeecc
Q 001900 917 GEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRP 996 (998)
Q Consensus 917 Gedle~~agaGl~~svpv~~~~~~~vdys~~p~LtD~~~r~~ll~~La~la~~IE~~fG~PQDIEWai~~g~LyILQsRP 996 (998)
+ ++ ..+ ..+++|++++.+||++||.||||||+|++|+|||||+||
T Consensus 298 ---l-----------------~~----------~~p-----~~~~~L~~~~~~LE~~f~~pqDIEftie~g~L~iLQtRp 342 (879)
T PRK09279 298 ---L-----------------EE----------AMP-----EVYAELVDIAKKLEKHYRDMQDIEFTIERGKLYMLQTRN 342 (879)
T ss_pred ---H-----------------hh----------cCh-----HHHHHHHHHHHHHHHHhCCCeeeEEEEECCEEEEEEeCC
Confidence 0 00 001 136899999999999999999999999999999999999
Q ss_pred C
Q 001900 997 Q 997 (998)
Q Consensus 997 ~ 997 (998)
.
T Consensus 343 ~ 343 (879)
T PRK09279 343 G 343 (879)
T ss_pred c
Confidence 4
No 9
>PRK05849 hypothetical protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=272.17 Aligned_cols=196 Identities=22% Similarity=0.240 Sum_probs=139.6
Q ss_pred cccchHHHHHHHHHHhcCCCcccCCCcceeCHHHHHHHHHhhchHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCCcH
Q 001900 689 GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPN 768 (998)
Q Consensus 689 ~~~VGgKAanLa~L~~~~p~g~~VP~GfvIPfgafe~~L~~~~n~~l~~~I~~l~~~l~~~d~~~L~~IR~~I~~~~lP~ 768 (998)
.-.+|+||++|+.|++++ .+++||+++++|...+.+ .. +.+ + +.|+..+ +.
T Consensus 5 ~~~~~~KA~tL~~L~~~~-~~~~i~~~~v~~~~e~~~---~~--~~~---~---------------~~i~~~~-----~~ 55 (783)
T PRK05849 5 ELFFQTKAETLANLQPIL-KKAKILPLLLFSVREWLS---NK--DKV---L---------------EEIQNSF-----PA 55 (783)
T ss_pred ccccchHHHHHHHHHhhh-cCCCCCCeEEeCHHhhcc---CH--HHH---H---------------HHHHHhc-----CC
Confidence 457899999999999976 589999999999764332 11 111 1 1122111 00
Q ss_pred HHHHHHHHHHHccCC----CCCCCCccc---------hHHHHHHHHHHHHhcCCChHHHHHHHHcCCCcccccceeEEEE
Q 001900 769 QLVQELKTEMKSSGM----PWPGDEGEQ---------RWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQE 835 (998)
Q Consensus 769 eL~~eL~~a~~ssg~----~~~g~~G~~---------~~e~L~~AIK~VWAS~fs~RA~~YRr~~Gi~~~~v~MAVLVQe 835 (998)
-.-+++||+. +..+++|++ ..+++..||++||||+++ ++ .|||+||+
T Consensus 56 -----~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~-----------~~----~~aVlVQ~ 115 (783)
T PRK05849 56 -----DKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGT-----------SK----DDEILVQP 115 (783)
T ss_pred -----CeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCC-----------CC----CCeEEEEe
Confidence 0123566543 234566764 246999999999999776 22 38999999
Q ss_pred eec-cCeeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCceeEEEecCCCCCccccCCCCCccccccceeEEeecC
Q 001900 836 IIN-ADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSD 914 (998)
Q Consensus 836 mV~-ad~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~f~v~k~~~~~~~vl~~~sk~ig~~~~~~~i~~s~ 914 (998)
||. +..|||+||+||.+|++..+....++|+||.||+|.. +|+.+.+.+.+
T Consensus 116 MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~-t~~~~~~~~~~--------------------------- 167 (783)
T PRK05849 116 MLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSG-GSATTVYHYRD--------------------------- 167 (783)
T ss_pred CccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccC-CCCceeeeccc---------------------------
Confidence 998 6999999999999998755544445899999999975 55444432210
Q ss_pred CCCCccccccCCcccccccCchhhHhhhcccCCccCCcccchHHHHHHHHHHHHHHHHHcCC-ceEEEEEE-ECCEEEEE
Q 001900 915 SNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGS-AQDIEGVV-RDGKIYVV 992 (998)
Q Consensus 915 snGedle~~agaGl~~svpv~~~~~~~vdys~~p~LtD~~~r~~ll~~La~la~~IE~~fG~-PQDIEWai-~~g~LyIL 992 (998)
.++++++. +++|++++++||++||+ |||||||+ ++|+||||
T Consensus 168 --------------------------------~~~l~p~~-----~~~L~~la~~LE~~fg~dpqDIEfaid~~g~L~lL 210 (783)
T PRK05849 168 --------------------------------ALVFKPPR-----LKKLIELIRELEALFGCDFLDIEFAIDEKEELYIL 210 (783)
T ss_pred --------------------------------cccCCHHH-----HHHHHHHHHHHHHHcCCCCeeeEEEEccCCEEEEE
Confidence 01222233 68999999999999986 99999999 59999999
Q ss_pred eeccCC
Q 001900 993 QTRPQM 998 (998)
Q Consensus 993 QsRP~v 998 (998)
|+||+.
T Consensus 211 Q~RPi~ 216 (783)
T PRK05849 211 QVRPIT 216 (783)
T ss_pred EccCCC
Confidence 999974
No 10
>PLN02784 alpha-amylase
Probab=99.00 E-value=3.6e-10 Score=137.99 Aligned_cols=72 Identities=33% Similarity=0.599 Sum_probs=67.1
Q ss_pred CCCCCCCCCCCcccc-ccccccccccCCCCCCCcceeEEEEEecCCceeceeEEEec--CCceeecCCCceEEEccc
Q 001900 1 MAPPPSVMPAGSVSL-SGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQS--GGNWIKNKGSDFYVDFSY 74 (998)
Q Consensus 1 ~~p~~~~~p~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~~~--~~~w~~~~~~d~~~~~~~ 74 (998)
.+||+.+.|+||+.. ++||||||+..+..+..+++| |+|+++ +.|.||.|||++ +++|||++|+||+|+|..
T Consensus 135 ~~PP~~~~PpgS~~~~~~A~eT~f~~~s~~~~~~~v~-iel~l~-~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~ 209 (894)
T PLN02784 135 DQPPEEMRPPGSIAIKDYAIETPLKKSSEGDSFYEVT-IDLDPN-SSIAAINFVLKDEETGAWYQHKGRDFKVPLVD 209 (894)
T ss_pred cCCCcccCCCCcEEecCeEEeccccccccCCcceeEE-EEEeeC-CceeeEEEEEEeCCCCchhhcCCccEEEeccc
Confidence 479999999999997 899999999999888888887 999997 889999999998 899999999999999985
No 11
>PLN02784 alpha-amylase
Probab=98.90 E-value=1.4e-09 Score=132.89 Aligned_cols=71 Identities=25% Similarity=0.450 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCccccccccccccccCCCCCCCcceeEEEEEecCCceeceeEEEec-CCceeecCCCceEEEccccc
Q 001900 1 MAPPPSVMPAGSVSLSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQS-GGNWIKNKGSDFYVDFSYES 76 (998)
Q Consensus 1 ~~p~~~~~p~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~~~-~~~w~~~~~~d~~~~~~~~~ 76 (998)
.+||..+.|++|...++||||||+..++++.+++. +++ ++.+.||+|||++ +++|||++|+||||+|...+
T Consensus 324 ~~Pp~~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~--~~l---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~ 395 (894)
T PLN02784 324 EIPPEPHPPETSLFKNKALQTMLQQKDDGNGSSGL--FSL---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSS 395 (894)
T ss_pred cCCCCCCCCCcceecccccccccccccCCCcceEE--Eec---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchh
Confidence 47999999999999999999999999887766654 444 7789999999999 89999999999999998754
No 12
>PRK05849 hypothetical protein; Provisional
Probab=96.33 E-value=0.032 Score=70.14 Aligned_cols=175 Identities=14% Similarity=0.072 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHH--hhHHH----HHHhhcchHHHHhhhcCccchhhccccHHHHhhhhhHH----HHHHHhhhhHH
Q 001900 460 ALFAKSVLDRTRLALA--SKADW----YQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAA----LSLLLNRLDPV 529 (998)
Q Consensus 460 Al~~kA~ldr~r~~~~--~~~~~----~~~~~~~~a~~lG~~lg~e~~~v~~F~Ee~IR~~~~f~----lS~l~~~l~~~ 529 (998)
...++.+++++|..++ +++-. .....-.....+|..+|+++.-+--++-+.|++...-. ....+..+-..
T Consensus 571 ~~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~~ 650 (783)
T PRK05849 571 NIDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIKR 650 (783)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHHH
Confidence 3557888888888887 33322 22223333446888889877777767777676532110 11222111111
Q ss_pred HHHh--------------hC---------CCCceEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCC-CCCCC-CC
Q 001900 530 LRKT--------------AS---------LGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVK-GEEEI-PD 584 (998)
Q Consensus 530 lr~~--------------a~---------~~~wq~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~-G~eeI-p~ 584 (998)
.++. .. ...=..++||.+.|.++++..-. . ....-.|||+..++ |=.-+ ..
T Consensus 651 rk~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~n~is~g~v~g~v~v~~~~~---~-~~~~G~Ilv~~~tdPg~~~lf~~ 726 (783)
T PRK05849 651 NKQEYELTRSLKLPPLICSADDVYSFEIHESKPNFITQKRVEATVADLDNDN---D-DDLEGKIVCIENADPGYDWLFTK 726 (783)
T ss_pred HHHHHHHHhcCCCCCeeccCCccccccccCCCCCCccCCEEEEEEEEecChh---h-cCCCCCEEEeCCCCccchHHHhh
Confidence 1110 00 00011379999999999987642 1 12245699988887 11122 12
Q ss_pred CceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEEecCCce
Q 001900 585 GTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADI 641 (998)
Q Consensus 585 ~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~ 641 (998)
+++||||..-+ ..||.+++||..|||-+.--.....+.+ .+|+.|.+......|
T Consensus 727 ~i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v 780 (783)
T PRK05849 727 GIAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRI 780 (783)
T ss_pred heeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEE
Confidence 69999998764 8999999999999999774322112222 258888887765444
No 13
>PRK08296 hypothetical protein; Provisional
Probab=96.12 E-value=0.0053 Score=74.88 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=70.8
Q ss_pred EeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecCh
Q 001900 541 VISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDP 618 (998)
Q Consensus 541 ~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~ 618 (998)
.++||.+.|.+++|.+..+.. ....+.|||+...+ -+.+| ..+.||||..- ..+||.++.||+.|||-+..-..
T Consensus 504 ~~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~td-P~~~~~~~~~~GiVte~G-g~~SHaAIvARe~GIPaVvgv~~ 579 (603)
T PRK08296 504 AASPGVVEGPARVIRSADELS--EVQEGEILVCPVTS-PSWAPIFAKIKATVTDIG-GVMSHAAIVCREYGLPAVVGTGN 579 (603)
T ss_pred ecCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCC-HHHHHHHHHheEEEEecC-CCcchHHHHHHHcCCCEEEcCcc
Confidence 358999999999998876643 24567899988876 12233 37999999875 48999999999999998876542
Q ss_pred hhhhHhhhcCCCeEEEEecCCceEE
Q 001900 619 NILADLQSNEGKMLHLKPTSADIAY 643 (998)
Q Consensus 619 ~~~~~l~~l~Gk~V~l~vs~~~~~l 643 (998)
... +-.+|..|.+..+...|.+
T Consensus 580 -at~--~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 580 -ATK--RIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred -Hhh--hcCCCCEEEEECCCCEEEE
Confidence 111 2247999998887765543
No 14
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=95.51 E-value=0.0087 Score=54.42 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=47.7
Q ss_pred CCCCeEEEEecCCCCCCC--CCCceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEEec
Q 001900 565 YDRPTILLARRVKGEEEI--PDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPT 637 (998)
Q Consensus 565 ~~~p~Ill~~~v~G~eeI--p~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs 637 (998)
...++|||++...-..-. ...++||||..- .++||.+++||.+|||.+..-.. .... -.+|.+|.+..+
T Consensus 8 ~~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~G-g~~SH~aIlAr~~giP~ivg~~~-~~~~--i~~g~~v~lDg~ 78 (80)
T PF00391_consen 8 LPEGVILVAEELTPSDLALDLQRVAGIVTEEG-GPTSHAAILARELGIPAIVGVGD-ATEA--IKDGDWVTLDGN 78 (80)
T ss_dssp TTSTEEEEESS--TTCHHSHHTTSSEEEESSS-STTSHHHHHHHHTT-EEEESTTT-HHHH--SCTTEEEEEETT
T ss_pred CCCCEEEEECCCCHHHHhcchhheEEEEEEcC-CccchHHHHHHHcCCCEEEeecc-Hhhc--cCCCCEEEEECC
Confidence 456789999987733322 148999999886 48899999999999999986652 2222 235888877544
No 15
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=95.21 E-value=0.02 Score=73.11 Aligned_cols=93 Identities=15% Similarity=0.137 Sum_probs=68.6
Q ss_pred eeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecChh
Q 001900 542 ISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPN 619 (998)
Q Consensus 542 ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~ 619 (998)
+++|.+.|.++++.+..+. ......|||+...++ ...| ..+.||||.. ...+||.+|.||..|||-++.-..
T Consensus 773 ~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~~p-~~~~~~~~~~giv~~~-Gg~~sH~aIvare~gIPavv~~~~- 846 (871)
T PRK06241 773 VSSGVVEGRARVILNPEDA---DLEKGDILVTAFTDP-GWTPLFVSIKGLVTEV-GGLMTHGAVIAREYGIPAVVGVEN- 846 (871)
T ss_pred cCCCeEEEEEEEECCHHHc---CCCCCeEEEecCCCH-HHHHHHHhceEEEEcC-CCcchHHHHHHHhcCCCEEEcccc-
Confidence 6899999999998876554 234668999988874 2333 3799997774 558999999999999998874432
Q ss_pred hhhHhhhc-CCCeEEEEecCCceEE
Q 001900 620 ILADLQSN-EGKMLHLKPTSADIAY 643 (998)
Q Consensus 620 ~~~~l~~l-~Gk~V~l~vs~~~~~l 643 (998)
..+.+ +|..|.+......+.+
T Consensus 847 ---~~~~l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 847 ---ATKLIKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred ---HHhhcCCCCEEEEECCCCEEEE
Confidence 23333 7999999877655543
No 16
>PRK05865 hypothetical protein; Provisional
Probab=93.81 E-value=0.072 Score=67.79 Aligned_cols=94 Identities=18% Similarity=0.105 Sum_probs=69.1
Q ss_pred eeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecChh
Q 001900 542 ISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPN 619 (998)
Q Consensus 542 ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~ 619 (998)
++||.+.|++++|.. .+ ......+.|||+...+ -..+| ..+.||||..- ..+||.++.||..|||-+.+-..
T Consensus 741 ~s~G~v~G~vrvv~~-~~--~~~~~~g~ILVa~~td-p~~~~~~~~a~giVte~G-g~~SH~AIvARe~gIPaVvgv~~- 814 (854)
T PRK05865 741 VCGGRVRGRVRIVRP-ET--IDDLQPGEILVAEVTD-VGYTAAFCYAAAVVTELG-GPMSHAAVVAREFGFPCVVDAQG- 814 (854)
T ss_pred ccCCccEEEEEEecH-HH--hhhcCCCeEEEeCCCC-HHHHHHHHHheEEEeccC-CCccHHHHHHHHcCCCEEEcccc-
Confidence 488899999999972 22 1235667899988876 11222 37999999865 48999999999999999986542
Q ss_pred hhhHhhh-cCCCeEEEEecCCceEEE
Q 001900 620 ILADLQS-NEGKMLHLKPTSADIAYS 644 (998)
Q Consensus 620 ~~~~l~~-l~Gk~V~l~vs~~~~~l~ 644 (998)
..+. .+|+.|.+..+...+.+-
T Consensus 815 ---at~~l~dG~~V~vDg~~G~V~~l 837 (854)
T PRK05865 815 ---ATRFLPPGALVEVDGATGEIHVV 837 (854)
T ss_pred ---HhhcCCCCCEEEEECCCcEEEEe
Confidence 2222 389999999887666653
No 17
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=93.61 E-value=0.063 Score=67.93 Aligned_cols=92 Identities=16% Similarity=0.219 Sum_probs=69.0
Q ss_pred eEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecC
Q 001900 540 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFD 617 (998)
Q Consensus 540 q~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d 617 (998)
..++||.+.|.++++.+..+.. .+..+.|||++...- +++| ..+.||||..-. ..||.++.||+.|||-+..-.
T Consensus 358 ~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~p-~~~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavvg~~ 433 (782)
T TIGR01418 358 RAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTDP-DWEPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVVGTG 433 (782)
T ss_pred cccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEEccc
Confidence 4579999999999999877754 355677999877662 3344 389999998764 899999999999999876533
Q ss_pred hhhhhHhhhcCCCeEEEEecC
Q 001900 618 PNILADLQSNEGKMLHLKPTS 638 (998)
Q Consensus 618 ~~~~~~l~~l~Gk~V~l~vs~ 638 (998)
+....+ .+|..|.+....
T Consensus 434 -~~~~~l--~~G~~v~vDg~~ 451 (782)
T TIGR01418 434 -DATKTL--KDGMEVTVDCAE 451 (782)
T ss_pred -chhhcc--cCCCEEEEEcCC
Confidence 222222 369999988876
No 18
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=93.60 E-value=0.063 Score=64.95 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=65.4
Q ss_pred ceEeeeeEEEEEEEE-eccccccccCCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEe
Q 001900 539 WQVISPVEVFGYVAV-VDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATC 615 (998)
Q Consensus 539 wq~ispG~A~G~L~~-V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~ 615 (998)
=..++||.+.|+++. .++..+.. ....+.|||+.... -++++ ..+.||||..-. ..||.++.||++|||-+..
T Consensus 353 G~~as~G~a~G~V~~~~~~~~~~~--~~~~g~ILV~~~t~-P~~~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~VvG 428 (530)
T PRK05878 353 GLPACPGVVSGTAYTDVDEALDAA--DRGEPVILVRDHTR-PDDVHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVAVVG 428 (530)
T ss_pred CeeccCceEEEEEEECHHHHHHHh--hccCCEEEEECCCC-HHHHhhhHhheEEEEccCC-ccchHHHHHHHcCCCEEEc
Confidence 345799999999864 22222211 23456799887766 23344 369999998765 8999999999999999985
Q ss_pred cChhhhhHhhhcCCCeEEEEecCCce
Q 001900 616 FDPNILADLQSNEGKMLHLKPTSADI 641 (998)
Q Consensus 616 ~d~~~~~~l~~l~Gk~V~l~vs~~~~ 641 (998)
-.. ....+ .+|..|.+..+...|
T Consensus 429 ~~~-~~~~~--~~G~~VtvDg~~G~V 451 (530)
T PRK05878 429 CGA-GVAAA--LAGKEITVDGYEGEV 451 (530)
T ss_pred ccc-hhhcc--CCCCEEEEECCCCEE
Confidence 442 22223 469999887765433
No 19
>PRK06354 pyruvate kinase; Provisional
Probab=93.41 E-value=0.059 Score=65.94 Aligned_cols=94 Identities=16% Similarity=0.219 Sum_probs=69.2
Q ss_pred EeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecCh
Q 001900 541 VISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDP 618 (998)
Q Consensus 541 ~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~ 618 (998)
..+||.+.|.++++....+. ..+..+.|||++..+- +.+| ..+.||||..-+ ..||.++.||.+|||-+..-..
T Consensus 487 ~as~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~~ 562 (590)
T PRK06354 487 GIGRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVKN 562 (590)
T ss_pred ccccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEeccc
Confidence 34789999999998876553 2456788999988773 3344 479999998664 8999999999999999986543
Q ss_pred hhhhHhhhcCCCeEEEEecCCce
Q 001900 619 NILADLQSNEGKMLHLKPTSADI 641 (998)
Q Consensus 619 ~~~~~l~~l~Gk~V~l~vs~~~~ 641 (998)
... .-.+|..|.+......+
T Consensus 563 -~~~--~l~~G~~v~vDg~~G~V 582 (590)
T PRK06354 563 -ATS--LIKDGQIITVDAARGVV 582 (590)
T ss_pred -hhh--ccCCCCEEEEECCCCEE
Confidence 111 12368888887765433
No 20
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=93.05 E-value=0.061 Score=68.13 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=67.7
Q ss_pred eEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecC
Q 001900 540 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFD 617 (998)
Q Consensus 540 q~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d 617 (998)
+.++||.++|.++++.+..+.. .+..+.|||++...= ++++ ..+.||||..- ...||.++.||++|||-+.=-.
T Consensus 360 ~~~~~G~~~G~v~v~~~~~~~~--~~~~g~ILV~~~~~p-~~~~~l~~~~givt~~G-g~tSH~AilAR~lgIPavvg~~ 435 (795)
T PRK06464 360 RAIGPGIGSGKVRVILDISEMD--KVQPGDVLVTDMTDP-DWEPVMKRASAIVTNRG-GRTCHAAIIARELGIPAVVGTG 435 (795)
T ss_pred cccCCCceeeEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHHHhheEEEEcCC-CCcchHHHHHHHcCCCEEEccC
Confidence 3468999999999998876654 245678999877661 3343 37999999876 4789999999999999765221
Q ss_pred hhhhhHhhhcCCCeEEE---EecCCceEE
Q 001900 618 PNILADLQSNEGKMLHL---KPTSADIAY 643 (998)
Q Consensus 618 ~~~~~~l~~l~Gk~V~l---~vs~~~~~l 643 (998)
+....+ .+|..|.+ ......+..
T Consensus 436 -~~~~~l--~~G~~v~v~~~Dg~~G~v~~ 461 (795)
T PRK06464 436 -NATEVL--KDGQEVTVSCAEGDTGYVYE 461 (795)
T ss_pred -ccccee--cCCCEEEEEeccCCCcEEEe
Confidence 122212 36999988 554433333
No 21
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=93.03 E-value=0.071 Score=67.92 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=66.8
Q ss_pred EeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecCh
Q 001900 541 VISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDP 618 (998)
Q Consensus 541 ~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~ 618 (998)
..|||.|+|++++...-..-. ....++.|||..... -++++ ..+.||||..-. ..||.+|.||++|||-++.-..
T Consensus 399 ~aspGaa~G~v~~~~~~a~~~-~~~~~~~ILV~~et~-P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~VvG~~~ 475 (879)
T PRK09279 399 PASPGAATGKIVFTADEAEAL-AARGEKVILVRPETS-PEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCVVGAGA 475 (879)
T ss_pred ccCCCeEEEEEEEChHHHHHh-hccCCCEEEEECCCC-HHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEEeccCc
Confidence 469999999997743322211 123456788877665 24555 258899998664 8999999999999999875432
Q ss_pred hhhh---------HhhhcCCCeEEEEecCCceEEE
Q 001900 619 NILA---------DLQSNEGKMLHLKPTSADIAYS 644 (998)
Q Consensus 619 ~~~~---------~l~~l~Gk~V~l~vs~~~~~l~ 644 (998)
..++ .-.-.+|..|.+..+...|...
T Consensus 476 ~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g 510 (879)
T PRK09279 476 LRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLG 510 (879)
T ss_pred ceEecccCEEEECCEEecCCCEEEEECCCCEEEEC
Confidence 2111 1122468888888876555544
No 22
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=92.20 E-value=0.11 Score=66.26 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=67.6
Q ss_pred eEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecC
Q 001900 540 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFD 617 (998)
Q Consensus 540 q~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d 617 (998)
...+||.+.|++++...-.... .....+.|||..... -++++ ..+.||||..-. ..||.++.||++|||-++.-.
T Consensus 392 ~~aspG~a~G~v~~~~~~a~~~-~~~~~~~ILV~~~t~-P~d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~VvG~~ 468 (856)
T TIGR01828 392 LPASPGAATGKIVFSAEDAVEL-AEKGKKVILVREETS-PEDIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVSGCE 468 (856)
T ss_pred cccCCCeEEEEEEEchHHHHHH-hhcCCCEEEEECCCC-HHHHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEEccc
Confidence 3469999999998763322111 123456788887765 23444 368999998765 899999999999999987543
Q ss_pred hhhhh---------HhhhcCCCeEEEEecCCceEEE
Q 001900 618 PNILA---------DLQSNEGKMLHLKPTSADIAYS 644 (998)
Q Consensus 618 ~~~~~---------~l~~l~Gk~V~l~vs~~~~~l~ 644 (998)
...++ .-.-.+|..|.+..+...+...
T Consensus 469 ~~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g 504 (856)
T TIGR01828 469 ELKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLG 504 (856)
T ss_pred ccccccccceeeeCCeEecCCCEEEEECCCCEEEEC
Confidence 22211 1122468888888776555443
No 23
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=89.84 E-value=0.97 Score=43.38 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=68.7
Q ss_pred eEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCCC---CceEEEcCCCCCcccceeeecccCCcceeEec
Q 001900 540 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPD---GTVAVLTADMPDVLSHVSVRARNCKVCFATCF 616 (998)
Q Consensus 540 q~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp~---~VaGVit~~~~~~LSHv~VrARn~gVp~at~~ 616 (998)
|.|-.|.+.|+.++-++-.+... .+..-.||++...+ .|+=| ...||||.+.. .-||-+|-+++.|||.+.=.
T Consensus 6 qgIg~gsv~G~~~vA~~~~~~~~-k~~~g~iLv~~std--~d~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~ 81 (111)
T COG3848 6 QGIGRGSVSGRAVVADSGKEAEQ-KFEEGVILVTPSTD--ADFVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGV 81 (111)
T ss_pred eeecccceeeEEEEccCHhHhhC-CcccCcEEEeccCC--hhhHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEe
Confidence 67788899999988877665442 24566799999988 55442 68899998876 88999999999999999854
Q ss_pred ChhhhhHhhhcCCCeEEEEecCCceEE
Q 001900 617 DPNILADLQSNEGKMLHLKPTSADIAY 643 (998)
Q Consensus 617 d~~~~~~l~~l~Gk~V~l~vs~~~~~l 643 (998)
+. +.+.+ .+|..|.+..+- ++.+
T Consensus 82 ~~-at~~i--~dG~~vTvD~~r-G~VY 104 (111)
T COG3848 82 KK-ATQLI--RDGAIVTVDAQR-GVVY 104 (111)
T ss_pred cc-hhhhc--cCCCEEEEeccc-ceEE
Confidence 42 11211 267777666542 4444
No 24
>PRK03955 hypothetical protein; Reviewed
Probab=88.72 E-value=2.4 Score=42.58 Aligned_cols=96 Identities=16% Similarity=0.286 Sum_probs=63.9
Q ss_pred eEeeeeEEEEEEEEeccccc----cccCC----------CC---CCeEEEEecCCCCCCCC--------C--CceEEEcC
Q 001900 540 QVISPVEVFGYVAVVDELLA----VQDKS----------YD---RPTILLARRVKGEEEIP--------D--GTVAVLTA 592 (998)
Q Consensus 540 q~ispG~A~G~L~~V~~l~~----~~~~~----------~~---~p~Ill~~~v~G~eeIp--------~--~VaGVit~ 592 (998)
..+++|.|.|++.+.++--. +.+++ +. .-.||++....|---=+ - .=+|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 46899999999988765221 11111 00 23588888877541100 0 12789999
Q ss_pred CCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEEecCCceEE
Q 001900 593 DMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAY 643 (998)
Q Consensus 593 ~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~~l 643 (998)
..-++|||-++.| +||.+.-.+ .+.|+ +|.+|++..+...+.+
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l~--~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKLK--DGDRVVVDGDEGEVEI 128 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceecC--CCCEEEEeCCCCEEEE
Confidence 9999999999999 999998655 33332 8999988765544443
No 25
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=87.89 E-value=0.55 Score=56.37 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=48.9
Q ss_pred CCCCeEEEEecCCCCC--CCC-CCceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEEecCCce
Q 001900 565 YDRPTILLARRVKGEE--EIP-DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADI 641 (998)
Q Consensus 565 ~~~p~Ill~~~v~G~e--eIp-~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~ 641 (998)
.+.|.|||++...=-+ .++ .+|.||+|..- ...||.+++||.+|||-++=-.. .+. .-.+|..|-+......+
T Consensus 394 ~~~~~ILVA~dLtPSd~a~Ld~~~V~Givt~~G-G~TSHtAILARslgIPaVvg~~~-~~~--~~~~G~~vilDG~~G~v 469 (473)
T PRK11377 394 FNSPTILLAENIYPSTVLQLDPAVVKGICLSAG-SPLSHSAIIARELGIGWICQQGE-KLY--AIQPEETLTLDVKTQRL 469 (473)
T ss_pred CCCCEEEEECCCCHHHHHhcCHhHeEEEEECCC-CcccHHHHHHHHcCCCEEEcchh-hHh--hccCCCEEEEECCCCEE
Confidence 3568899877665000 111 27999999876 48899999999999997652221 222 22468888887766444
Q ss_pred E
Q 001900 642 A 642 (998)
Q Consensus 642 ~ 642 (998)
.
T Consensus 470 ~ 470 (473)
T PRK11377 470 N 470 (473)
T ss_pred E
Confidence 3
No 26
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=86.09 E-value=0.6 Score=57.35 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=54.8
Q ss_pred CCCCeEEEEecCCCCC--CCC-CCceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEEecCCce
Q 001900 565 YDRPTILLARRVKGEE--EIP-DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADI 641 (998)
Q Consensus 565 ~~~p~Ill~~~v~G~e--eIp-~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~ 641 (998)
+..|.|||++...-.+ .++ .+|.||||..-. ..||.+++||++|||-++.-. +.... -.+|+.|.+......+
T Consensus 152 ~~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~-~~~~~--~~~G~~vilDg~~G~v 227 (575)
T PRK11177 152 IQEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTG-NITKQ--VKNGDYLILDAVNNQI 227 (575)
T ss_pred CCCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcCh-hHHhh--ccCCCEEEEECCCCEE
Confidence 4567888888776211 111 379999998765 789999999999999776443 22222 2369999988877666
Q ss_pred EEEec
Q 001900 642 AYSVV 646 (998)
Q Consensus 642 ~l~~~ 646 (998)
.+.+.
T Consensus 228 ~~~P~ 232 (575)
T PRK11177 228 YVNPT 232 (575)
T ss_pred EECCC
Confidence 66553
No 27
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=83.10 E-value=0.94 Score=55.58 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=53.9
Q ss_pred CCCCeEEEEecCCCCCCCC----CCceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEEecCCc
Q 001900 565 YDRPTILLARRVKGEEEIP----DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSAD 640 (998)
Q Consensus 565 ~~~p~Ill~~~v~G~eeIp----~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~ 640 (998)
+..|.|||++...= +++. .++.||+|..-. ..||.++.||++|||-+..-.. .... -.+|..|.+......
T Consensus 151 ~~~~~IlVa~~l~P-s~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~~-~~~~--~~~G~~v~vDg~~G~ 225 (565)
T TIGR01417 151 IQDEVILVAEDLTP-SETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTKS-VTSQ--VKNGDTVIIDGVKGI 225 (565)
T ss_pred CCCCeEEEecCCCH-HHHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcchh-HHhh--CCCCCEEEEECCCCE
Confidence 35678888876651 2332 369999998764 8999999999999997765432 2222 236999999888766
Q ss_pred eEEEe
Q 001900 641 IAYSV 645 (998)
Q Consensus 641 ~~l~~ 645 (998)
+.+.+
T Consensus 226 v~~~P 230 (565)
T TIGR01417 226 VIFNP 230 (565)
T ss_pred EEeCC
Confidence 66654
No 28
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=80.68 E-value=1.1 Score=56.78 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=53.8
Q ss_pred CCCCeEEEEecCCCCCCCC----CCceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEEecCCc
Q 001900 565 YDRPTILLARRVKGEEEIP----DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSAD 640 (998)
Q Consensus 565 ~~~p~Ill~~~v~G~eeIp----~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~ 640 (998)
...|.|||++...- .+++ .+|+||+|.+-. .-||.++.||++|||.+.=-+ .... ...|..|.+......
T Consensus 319 ~~~~~Ilva~~l~p-s~~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~--~~~G~~vilDg~~G~ 392 (748)
T PRK11061 319 WPERFILVADELTA-TLLAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPS--LLHQRLLIVDGYRGE 392 (748)
T ss_pred CCCCEEEEECCCCH-HHHHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhh--ccCCCEEEEECCCCE
Confidence 34677888777651 3333 279999998874 789999999999999765222 2222 235999998887766
Q ss_pred eEEEecc
Q 001900 641 IAYSVVE 647 (998)
Q Consensus 641 ~~l~~~~ 647 (998)
+.+.+.+
T Consensus 393 v~vnP~~ 399 (748)
T PRK11061 393 LLVDPEP 399 (748)
T ss_pred EEeCCCH
Confidence 7676533
No 29
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=79.34 E-value=3 Score=38.75 Aligned_cols=34 Identities=32% Similarity=0.795 Sum_probs=24.2
Q ss_pred EEEEecCCceeceeEEEecC-CceeecCCCceEEEc
Q 001900 38 IEIEIEEEGYVGMPFVLQSG-GNWIKNKGSDFYVDF 72 (998)
Q Consensus 38 ~~~~~~~~~~~g~~fv~~~~-~~w~~~~~~d~~~~~ 72 (998)
.+|++|.+.. .|-||+++| ++|=+|+|.||++++
T Consensus 52 ~tv~vP~~a~-~~dfvF~dg~~~wDNN~g~nY~~~V 86 (87)
T PF03423_consen 52 ATVDVPEDAY-VMDFVFNDGAGNWDNNNGANYHFPV 86 (87)
T ss_dssp EEEE--TTTS-EEEEEEE-SSS-EESTTTS-EEEES
T ss_pred EEEEEcCCce-EEEEEEcCCCCcEeCCCCccEEEEc
Confidence 5677777655 599999987 699999999999976
No 30
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=76.49 E-value=4 Score=49.69 Aligned_cols=114 Identities=20% Similarity=0.189 Sum_probs=65.5
Q ss_pred HHHHhhhhHHHHHhhCCCCceEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCC--CCC-CCceEEEcCCCCC
Q 001900 520 SLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEE--EIP-DGTVAVLTADMPD 596 (998)
Q Consensus 520 S~l~~~l~~~lr~~a~~~~wq~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~e--eIp-~~VaGVit~~~~~ 596 (998)
.++...=+|++|..++-- +-+.. =-|+...+ ..-....+.++.|+|++...--+ |.| ...+||++.+- .
T Consensus 288 ar~~~ltD~YLRER~~D~--~dL~~----RLL~~L~~-~~~~~~~~pe~aIlVarel~aa~L~e~Pr~rL~GvVl~dG-a 359 (756)
T COG3605 288 ARFARLTDPYLRERASDL--RDLGQ----RLLRHLDG-AEQGANAWPEDAILVARELGAAELLEYPRDRLRGVVLEDG-A 359 (756)
T ss_pred HHHHhccCHHHHHHHhhH--HHHHH----HHHHHhcC-cccchhcCCcceEEEecccCHHHHhhCchhhheeeeeecC-c
Confidence 445556689999876521 10000 00111111 11123456677899988876322 455 47999998764 4
Q ss_pred cccceeeecccCCcceeEe-cChhhhhHhhhcCCCeEEEEecCCceEEEe
Q 001900 597 VLSHVSVRARNCKVCFATC-FDPNILADLQSNEGKMLHLKPTSADIAYSV 645 (998)
Q Consensus 597 ~LSHv~VrARn~gVp~at~-~d~~~~~~l~~l~Gk~V~l~vs~~~~~l~~ 645 (998)
.-||+++.||.+|||.+-- .+- .....+|..+-+.--...+.+++
T Consensus 360 anSH~aIvaRAmGIP~V~~a~~i----~~~~~n~~~~IVDG~~gev~l~P 405 (756)
T COG3605 360 ANSHAAIVARAMGIPTVMGAAGI----VPSVLNGDALIVDGYRGEVHLRP 405 (756)
T ss_pred ccchHHHHHHhcCCceeccccCc----chhhhcCCcEEEECCcceEEeCC
Confidence 7899999999999998863 221 12334566555544444444444
No 31
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=72.57 E-value=3.8 Score=49.95 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=54.8
Q ss_pred CCCCeEEEEecCCCCCCCC---CCceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEEecCCce
Q 001900 565 YDRPTILLARRVKGEEEIP---DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADI 641 (998)
Q Consensus 565 ~~~p~Ill~~~v~G~eeIp---~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~ 641 (998)
.++|.||+++.+.=-+-.. ..|.|++|..-+ .-||.++.||..+||-++-.... ...+ .+|+.|-+....+.+
T Consensus 153 ~~~~~IlvA~dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~~-~~~v--~~g~~viiDg~~G~v 228 (574)
T COG1080 153 IDEEVILVAEDLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGAA-TLAV--KDGDTLILDGINGEV 228 (574)
T ss_pred CCCCeEEEECCCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcHH-hhcc--cCCCEEEEECCCCeE
Confidence 3567888876554000000 169999998755 78999999999999998866642 2223 389999998888777
Q ss_pred EEEec
Q 001900 642 AYSVV 646 (998)
Q Consensus 642 ~l~~~ 646 (998)
.+.+.
T Consensus 229 i~nP~ 233 (574)
T COG1080 229 IVNPD 233 (574)
T ss_pred EECcC
Confidence 77653
No 32
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=68.17 E-value=2.3 Score=53.99 Aligned_cols=110 Identities=22% Similarity=0.245 Sum_probs=72.2
Q ss_pred chhhccccHHHHhhhhhHHHHHHHhhhhHHHHHhhCCCCceEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCC
Q 001900 500 KWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGE 579 (998)
Q Consensus 500 ~~~v~~F~Ee~IR~~~~f~lS~l~~~l~~~lr~~a~~~~wq~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~ 579 (998)
+|.++- .+-++|+.+.-..+.+-...++ ...-..++. .+||.+.|+++++.+..+. ......+||+......
T Consensus 305 Ew~id~-~~~ilq~rP~t~~~~~~~~~~~---~~~~~~g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~~t~p- 376 (740)
T COG0574 305 EWAIDG-KLYILQARPETVLSLLHPVEDR---GRALLKGIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTPMTDP- 376 (740)
T ss_pred hhhhcC-ceEEEEecCccccccccccccc---ccceeeeee-ccCCceeEEEEEEecHHHh--cccccCceEEeecCCH-
Confidence 455554 5556777777666666555555 111122233 8999999999998877665 2334567888776652
Q ss_pred CCCC-CCc-eEEEcCCCCCcccceeeecccCCcceeEecCh
Q 001900 580 EEIP-DGT-VAVLTADMPDVLSHVSVRARNCKVCFATCFDP 618 (998)
Q Consensus 580 eeIp-~~V-aGVit~~~~~~LSHv~VrARn~gVp~at~~d~ 618 (998)
+.+| ..+ .||+ ++..-..||-++.||.+|+|-+.=-..
T Consensus 377 d~~~~m~~a~~Iv-t~~Gg~tshaaivaRe~g~Pavvg~~~ 416 (740)
T COG0574 377 DWVPLMKVAGAIV-TDRGGMTSHAAIVARELGIPAVVGTGS 416 (740)
T ss_pred HHhhhhhhccceE-EcCCCccccchhhhhhcCCCeEEcCch
Confidence 3444 334 4555 666669999999999999998874443
No 33
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=49.80 E-value=32 Score=37.13 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=37.5
Q ss_pred ccCCcccchHHHHHHHHHHHHHHHHHcC--CceEEEEEEE--CCEEEEEeecc
Q 001900 948 RLITDGHFQQSILSSIARAGCEIEELFG--SAQDIEGVVR--DGKIYVVQTRP 996 (998)
Q Consensus 948 p~LtD~~~r~~ll~~La~la~~IE~~fG--~PQDIEWai~--~g~LyILQsRP 996 (998)
+.|+++. .++|.+.+.+|-+.+| .+--|||+++ ++++|++...|
T Consensus 131 ~~L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNp 178 (211)
T PF02786_consen 131 QTLSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNP 178 (211)
T ss_dssp SSS-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEES
T ss_pred cccchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccC
Confidence 4566655 6899999999999887 6999999999 79999999888
No 34
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=39.03 E-value=37 Score=37.42 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=22.3
Q ss_pred ChhhHHHHHhhC-CCChHhhhcCCCC
Q 001900 251 DISAYWKTLNDN-GITKERLLSYDRA 275 (998)
Q Consensus 251 ~~~~yw~~l~~~-g~t~e~l~s~~r~ 275 (998)
|.-++|..+-+. |+|+|++.|++ |
T Consensus 92 ~hidlwlr~aeAlGvs~eei~s~e-p 116 (242)
T COG5424 92 NHIDLWLRLAEALGVSREEILSHE-P 116 (242)
T ss_pred cHHHHHHHHHHHcCCCHHHHhhcC-C
Confidence 677899999999 99999999999 6
No 35
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.79 E-value=1.2e+02 Score=33.78 Aligned_cols=87 Identities=20% Similarity=0.374 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHccCcchHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHhcCC---------CCcc---------hHHHH
Q 001900 163 DRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQ-RIRDEILVIQRNNN---------CKGG---------MMEEW 223 (998)
Q Consensus 163 ~~~t~~~~~~~~~~~~~r~~~r~~l~~~~rgg~g~~gq-~ird~il~i~~~n~---------~k~~---------~~e~w 223 (998)
+|++..+...-.+.|+...+++.++.=- +.|+.-.|+ ++..-|=.+.-+.+ ..|+ ++++|
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 6888888888889999999999988877 777777887 55544433332211 1222 67788
Q ss_pred HhhhcCCCCCchHHHHHHHHHHHhhCCChh
Q 001900 224 HQKLHNNTSPDDVIICQALIDYIKSDFDIS 253 (998)
Q Consensus 224 hqklhnnttpddv~icea~l~~l~~~~~~~ 253 (998)
-+| ...+-.|..|++|.|.||-.+ |+.
T Consensus 132 ~~~--~~~~e~dlfi~RaVL~yL~l~-n~~ 158 (260)
T PF04190_consen 132 STK--GYPSEADLFIARAVLQYLCLG-NLR 158 (260)
T ss_dssp HHH--TSS--HHHHHHHHHHHHHHTT-BHH
T ss_pred HHh--cCCcchhHHHHHHHHHHHHhc-CHH
Confidence 776 566667999999999999988 544
No 36
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=33.27 E-value=3e+02 Score=37.90 Aligned_cols=136 Identities=21% Similarity=0.201 Sum_probs=78.9
Q ss_pred chhhhHHHHHHHHHH---HHHHHhhchhhhcCChhhHHHHHHHHHhhhccCCCCcHH-H----HHHHHHHHhhhhcCCCC
Q 001900 384 LKDLLFLDIALESSV---RTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNED-L----IYCLKGWSNALSMSKSK 455 (998)
Q Consensus 384 ~~d~~~lD~ale~~~---r~~ie~~~~~~~~~~~~~~~~~~~l~l~nl~ls~~~n~e-l----~~~l~~W~~~~~~~~~~ 455 (998)
|-.|-|=|++=..++ |..+|..+-.+.. +++|++.+++-+||||.+-.|.|.- + +-....-.-+.. .
T Consensus 375 LTNLTFGDv~NKa~LCs~rgfMeavVAQL~s-~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~---~- 449 (2195)
T KOG2122|consen 375 LTNLTFGDVANKATLCSQRGFMEAVVAQLIS-APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR---N- 449 (2195)
T ss_pred hhccccccccchhhhhhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH---h-
Confidence 334455555533322 5556666655654 4899999999999999999987763 1 111111111111 1
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhHHHHHH--hhcchHHHHhhhcCcc--chhhccccHHHHhhhhhHHHHHHHhhhhHH
Q 001900 456 SDNWALFAKSVLDRTRLALASKADWYQK--VLQPSAEYLGTLLSVD--KWAVDIFTEEMIRAGSAAALSLLLNRLDPV 529 (998)
Q Consensus 456 ~~~wAl~~kA~ldr~r~~~~~~~~~~~~--~~~~~a~~lG~~lg~e--~~~v~~F~Ee~IR~~~~f~lS~l~~~l~~~ 529 (998)
.++ -.|||+|--.=.+-+..++.=.. ..+..-.+|-+.|.++ -+...+.-- =+|+...+|.+|.-=.++
T Consensus 450 ~kE--sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEs---aGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 450 KKE--STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIES---AGGILRNVSSLIATCEDY 522 (2195)
T ss_pred ccc--chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhc---CccHHHHHHhHhhccchH
Confidence 111 34788887776666644443333 2455667888888888 444442211 245777788777655555
No 37
>KOG3021 consensus Predicted kinase [General function prediction only]
Probab=33.16 E-value=38 Score=37.37 Aligned_cols=43 Identities=33% Similarity=0.500 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHccCcchHHHHHHHHhhccCCCCCCCchhh
Q 001900 158 ISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRI 202 (998)
Q Consensus 158 ~~~~q~~~t~~~~~~~~~~~~~r~~~r~~l~~~~rgg~g~~gq~i 202 (998)
+++-+..|...||+.+..+-..++..|---.||||||+ .|.+|
T Consensus 95 lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge--~~e~~ 137 (313)
T KOG3021|consen 95 LRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGE--EGEQI 137 (313)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHhccccccCcc--ccccc
Confidence 45667899999999999999999988888999999998 55544
No 38
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=24.82 E-value=63 Score=26.45 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=17.4
Q ss_pred CCCCchHHHHHHHHHHHhhC
Q 001900 230 NTSPDDVIICQALIDYIKSD 249 (998)
Q Consensus 230 nttpddv~icea~l~~l~~~ 249 (998)
.-|+||-.||.++.+|-.+.
T Consensus 14 GdteddT~v~r~l~~yY~~k 33 (41)
T PF14475_consen 14 GDTEDDTHVHRVLRKYYTEK 33 (41)
T ss_pred CCCcchhHHHHHHHHHHHHc
Confidence 45899999999999998765
Done!