Query 001901
Match_columns 998
No_of_seqs 730 out of 4690
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 11:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 1.4E-78 3E-83 610.1 17.7 286 648-957 3-288 (303)
2 KOG0374 Serine/threonine speci 100.0 1.8E-72 3.9E-77 619.6 26.9 321 648-987 9-330 (331)
3 KOG0373 Serine/threonine speci 100.0 1.1E-71 2.4E-76 550.4 17.6 286 648-957 6-292 (306)
4 PTZ00480 serine/threonine-prot 100.0 9.4E-69 2E-73 588.5 29.7 294 648-957 11-304 (320)
5 cd07420 MPP_RdgC Drosophila me 100.0 3.8E-68 8.2E-73 584.8 30.9 286 646-951 5-320 (321)
6 cd07419 MPP_Bsu1_C Arabidopsis 100.0 1.5E-67 3.3E-72 584.5 30.0 303 651-953 1-311 (311)
7 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 5.6E-67 1.2E-71 571.1 30.1 284 648-955 2-285 (285)
8 PTZ00244 serine/threonine-prot 100.0 3.5E-67 7.6E-72 573.7 28.3 291 646-952 2-292 (294)
9 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 4.6E-67 1E-71 574.0 28.0 291 648-954 2-292 (293)
10 PTZ00239 serine/threonine prot 100.0 1.1E-66 2.3E-71 571.5 30.7 286 648-957 3-289 (303)
11 cd07417 MPP_PP5_C PP5, C-termi 100.0 1.3E-65 2.9E-70 566.8 29.1 294 644-961 12-311 (316)
12 cd07416 MPP_PP2B PP2B, metallo 100.0 7.3E-65 1.6E-69 560.4 30.9 288 648-958 3-301 (305)
13 smart00156 PP2Ac Protein phosp 100.0 1.5E-64 3.3E-69 550.7 28.3 269 671-953 1-269 (271)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 1.6E-62 3.5E-67 546.8 31.1 300 644-953 8-365 (377)
15 KOG0375 Serine-threonine phosp 100.0 5.8E-63 1.3E-67 518.4 12.7 273 670-955 60-343 (517)
16 KOG0371 Serine/threonine prote 100.0 1.5E-62 3.2E-67 497.5 12.9 286 648-957 20-305 (319)
17 KOG0377 Protein serine/threoni 100.0 5.4E-53 1.2E-57 453.0 13.6 280 648-948 121-426 (631)
18 KOG0376 Serine-threonine phosp 100.0 1.3E-46 2.9E-51 417.1 13.5 279 671-963 183-467 (476)
19 PLN02153 epithiospecifier prot 100.0 1E-36 2.3E-41 346.7 38.6 306 78-438 9-338 (341)
20 PLN02193 nitrile-specifier pro 100.0 1.4E-36 3E-41 358.8 39.4 302 81-438 155-467 (470)
21 KOG4693 Uncharacterized conser 100.0 1.6E-37 3.5E-42 316.7 24.2 301 90-444 12-350 (392)
22 PLN02193 nitrile-specifier pro 100.0 1.1E-32 2.3E-37 325.8 36.6 278 113-443 120-414 (470)
23 KOG4152 Host cell transcriptio 100.0 3.9E-34 8.4E-39 312.6 22.1 310 77-440 18-364 (830)
24 KOG4441 Proteins containing BT 100.0 4.2E-33 9.1E-38 333.4 30.6 266 113-442 284-549 (571)
25 TIGR03547 muta_rot_YjhT mutatr 100.0 5.5E-31 1.2E-35 300.4 33.7 277 87-436 3-343 (346)
26 KOG0379 Kelch repeat-containin 100.0 6.3E-31 1.4E-35 310.0 30.3 297 83-439 52-357 (482)
27 TIGR03548 mutarot_permut cycli 100.0 1.7E-30 3.6E-35 293.6 32.0 283 90-432 2-321 (323)
28 PLN02153 epithiospecifier prot 100.0 2.7E-30 6E-35 294.0 32.8 260 158-442 5-287 (341)
29 KOG4693 Uncharacterized conser 100.0 1.6E-31 3.6E-36 272.9 20.0 228 87-353 74-312 (392)
30 PHA02713 hypothetical protein; 100.0 1.4E-30 3.1E-35 312.8 31.6 247 150-442 272-536 (557)
31 PRK14131 N-acetylneuraminic ac 100.0 3.4E-30 7.3E-35 296.8 32.4 283 83-439 20-368 (376)
32 KOG4441 Proteins containing BT 100.0 5.5E-30 1.2E-34 306.6 28.5 244 80-381 311-556 (571)
33 cd00144 MPP_PPP_family phospho 100.0 2.3E-30 5E-35 277.1 20.0 218 701-939 1-224 (225)
34 KOG1230 Protein containing rep 100.0 4.2E-30 9.1E-35 276.8 20.2 267 80-380 55-349 (521)
35 PHA02713 hypothetical protein; 100.0 2.7E-29 5.8E-34 301.8 26.9 241 82-381 284-543 (557)
36 KOG0379 Kelch repeat-containin 100.0 9.2E-29 2E-33 291.7 28.3 248 167-442 53-304 (482)
37 PHA03098 kelch-like protein; P 100.0 8.8E-28 1.9E-32 289.9 30.3 251 150-442 264-514 (534)
38 PHA03098 kelch-like protein; P 100.0 5.9E-27 1.3E-31 282.7 30.7 234 92-381 285-521 (534)
39 TIGR03548 mutarot_permut cycli 99.9 4.8E-26 1.1E-30 257.3 26.4 225 83-356 54-316 (323)
40 PHA02790 Kelch-like protein; P 99.9 5.2E-25 1.1E-29 261.1 28.8 207 113-378 271-477 (480)
41 KOG1230 Protein containing rep 99.9 2.8E-25 6.1E-30 239.7 21.0 248 170-443 62-344 (521)
42 PRK14131 N-acetylneuraminic ac 99.9 2.4E-24 5.3E-29 248.2 27.2 247 87-377 69-374 (376)
43 KOG4152 Host cell transcriptio 99.9 2.2E-25 4.9E-30 244.3 16.9 255 80-371 70-363 (830)
44 TIGR03547 muta_rot_YjhT mutatr 99.9 4.2E-24 9.2E-29 243.8 28.2 222 171-425 4-267 (346)
45 PHA02790 Kelch-like protein; P 99.9 1.1E-23 2.4E-28 249.8 28.7 205 180-440 267-471 (480)
46 cd07425 MPP_Shelphs Shewanella 99.9 3.8E-22 8.2E-27 210.3 14.6 185 701-924 1-196 (208)
47 PRK13625 bis(5'-nucleosyl)-tet 99.9 3.4E-22 7.4E-27 216.2 11.8 131 698-830 1-145 (245)
48 cd07423 MPP_PrpE Bacillus subt 99.8 1.2E-20 2.7E-25 203.1 11.2 130 698-830 1-142 (234)
49 cd07413 MPP_PA3087 Pseudomonas 99.8 8.9E-20 1.9E-24 194.4 16.3 123 701-828 2-143 (222)
50 cd07422 MPP_ApaH Escherichia c 99.8 1.8E-20 3.9E-25 202.2 10.6 129 700-841 1-134 (257)
51 PRK00166 apaH diadenosine tetr 99.8 2.2E-19 4.8E-24 195.9 17.2 125 699-836 2-131 (275)
52 TIGR00668 apaH bis(5'-nucleosy 99.8 6.7E-20 1.5E-24 197.5 11.9 127 699-839 2-134 (279)
53 cd07421 MPP_Rhilphs Rhilph pho 99.8 6.9E-19 1.5E-23 189.3 15.9 82 699-780 3-85 (304)
54 PRK11439 pphA serine/threonine 99.8 6.6E-19 1.4E-23 187.5 11.3 120 698-828 17-146 (218)
55 cd07424 MPP_PrpA_PrpB PrpA and 99.8 1.4E-18 3.1E-23 183.6 12.7 147 698-862 1-157 (207)
56 PHA02239 putative protein phos 99.8 5.7E-18 1.2E-22 181.2 13.8 124 699-830 2-168 (235)
57 PRK09968 serine/threonine-spec 99.7 1.6E-17 3.5E-22 176.5 9.9 120 698-828 15-144 (218)
58 COG3055 Uncharacterized protei 99.7 4.7E-15 1E-19 159.9 22.6 282 84-437 29-372 (381)
59 KOG2437 Muskelin [Signal trans 99.5 3.1E-15 6.7E-20 165.3 2.9 313 86-439 255-612 (723)
60 COG3055 Uncharacterized protei 99.4 1.2E-11 2.6E-16 133.9 19.5 236 88-368 79-371 (381)
61 KOG2437 Muskelin [Signal trans 99.2 9.1E-12 2E-16 138.3 4.4 210 212-436 238-468 (723)
62 PF00149 Metallophos: Calcineu 99.0 3.8E-09 8.3E-14 105.7 11.7 78 699-782 2-85 (200)
63 COG0639 ApaH Diadenosine tetra 98.8 7.3E-09 1.6E-13 102.5 7.0 147 776-929 2-155 (155)
64 PLN02772 guanylate kinase 98.7 5.4E-08 1.2E-12 110.0 12.1 93 84-211 17-110 (398)
65 PF13964 Kelch_6: Kelch motif 98.7 2.8E-08 6E-13 80.0 6.8 50 91-175 1-50 (50)
66 PLN02772 guanylate kinase 98.7 6.1E-08 1.3E-12 109.6 11.3 89 172-264 22-110 (398)
67 PF13964 Kelch_6: Kelch motif 98.7 3E-08 6.5E-13 79.8 6.3 50 174-228 1-50 (50)
68 PF13415 Kelch_3: Galactose ox 98.7 5.5E-08 1.2E-12 78.0 6.6 49 113-183 1-49 (49)
69 PRK09453 phosphodiesterase; Pr 98.6 1.3E-07 2.9E-12 98.0 9.5 68 698-775 1-76 (182)
70 PF12850 Metallophos_2: Calcin 98.6 1.2E-06 2.5E-11 87.9 14.2 61 698-776 1-61 (156)
71 cd00841 MPP_YfcE Escherichia c 98.5 3.3E-07 7.1E-12 92.2 9.1 59 699-775 1-59 (155)
72 PF13418 Kelch_4: Galactose ox 98.5 1.5E-07 3.2E-12 75.4 4.1 47 91-168 1-47 (49)
73 PF07646 Kelch_2: Kelch motif; 98.5 4.4E-07 9.5E-12 72.7 6.5 47 333-381 1-48 (49)
74 TIGR00040 yfcE phosphoesterase 98.5 4.2E-06 9.1E-11 84.6 15.3 62 698-774 1-63 (158)
75 PF13415 Kelch_3: Galactose ox 98.4 3.7E-07 8.1E-12 73.1 5.8 48 184-236 1-49 (49)
76 PF13418 Kelch_4: Galactose ox 98.4 2.2E-07 4.9E-12 74.3 4.1 46 227-274 1-47 (49)
77 cd07379 MPP_239FB Homo sapiens 98.4 1.7E-06 3.7E-11 85.1 10.6 118 699-911 1-120 (135)
78 PF07646 Kelch_2: Kelch motif; 98.3 1.2E-06 2.7E-11 70.1 6.5 46 227-275 1-49 (49)
79 cd07397 MPP_DevT Myxococcus xa 98.3 2E-06 4.4E-11 91.8 9.6 113 699-830 2-160 (238)
80 cd07388 MPP_Tt1561 Thermus the 98.3 5.2E-06 1.1E-10 88.4 12.3 71 698-775 5-75 (224)
81 PF13854 Kelch_5: Kelch motif 98.3 1.3E-06 2.9E-11 67.5 5.6 40 171-210 1-41 (42)
82 PF01344 Kelch_1: Kelch motif; 98.3 1.1E-06 2.4E-11 69.6 4.7 44 174-219 1-44 (47)
83 PF01344 Kelch_1: Kelch motif; 98.3 1.1E-06 2.4E-11 69.6 4.4 45 227-274 1-46 (47)
84 PF13854 Kelch_5: Kelch motif 98.2 2E-06 4.3E-11 66.5 5.4 39 224-263 1-41 (42)
85 cd00838 MPP_superfamily metall 98.2 1.5E-05 3.2E-10 76.3 11.3 117 701-911 1-119 (131)
86 PF03089 RAG2: Recombination a 98.1 0.00087 1.9E-08 71.5 22.6 147 84-260 15-188 (337)
87 PF07250 Glyoxal_oxid_N: Glyox 98.0 0.00025 5.5E-09 76.2 16.9 154 203-383 48-210 (243)
88 smart00612 Kelch Kelch domain. 98.0 1.1E-05 2.3E-10 63.3 4.7 47 115-185 1-47 (47)
89 PF03089 RAG2: Recombination a 97.9 0.0041 9E-08 66.5 23.7 110 186-301 40-174 (337)
90 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.0011 2.5E-08 71.2 20.0 149 149-318 45-199 (243)
91 cd07394 MPP_Vps29 Homo sapiens 97.9 0.00039 8.4E-09 71.8 15.8 58 699-774 1-64 (178)
92 cd07392 MPP_PAE1087 Pyrobaculu 97.9 0.00027 5.8E-09 73.1 14.6 65 700-776 1-66 (188)
93 smart00612 Kelch Kelch domain. 97.8 2.2E-05 4.9E-10 61.5 4.8 47 345-416 1-47 (47)
94 KOG0376 Serine-threonine phosp 97.7 7.7E-06 1.7E-10 93.1 -0.2 238 670-929 14-299 (476)
95 cd07403 MPP_TTHA0053 Thermus t 97.6 0.0005 1.1E-08 67.1 11.3 56 701-773 1-56 (129)
96 TIGR01640 F_box_assoc_1 F-box 97.6 0.013 2.8E-07 63.0 22.9 206 150-373 14-230 (230)
97 PRK05340 UDP-2,3-diacylglucosa 97.5 0.00035 7.6E-09 75.8 9.6 70 698-775 1-83 (241)
98 cd07404 MPP_MS158 Microscilla 97.4 0.00013 2.8E-09 74.3 4.2 67 700-775 1-68 (166)
99 cd07399 MPP_YvnB Bacillus subt 97.4 0.01 2.3E-07 63.2 18.6 69 882-953 135-213 (214)
100 cd07400 MPP_YydB Bacillus subt 97.4 0.0025 5.4E-08 63.1 12.8 41 733-774 38-80 (144)
101 PRK11340 phosphodiesterase Yae 97.3 0.00045 9.7E-09 76.4 7.5 70 698-775 50-125 (271)
102 cd07385 MPP_YkuE_C Bacillus su 97.3 0.00044 9.5E-09 73.8 6.6 70 698-775 2-76 (223)
103 COG0622 Predicted phosphoester 97.2 0.014 3.1E-07 59.7 15.7 65 698-776 2-66 (172)
104 TIGR01854 lipid_A_lpxH UDP-2,3 97.1 0.0016 3.5E-08 70.2 8.7 177 700-910 1-200 (231)
105 cd07391 MPP_PF1019 Pyrococcus 97.0 0.0018 3.9E-08 66.4 7.9 43 733-775 44-88 (172)
106 cd07390 MPP_AQ1575 Aquifex aeo 96.9 0.0027 5.9E-08 64.9 8.3 40 733-777 45-84 (168)
107 TIGR03729 acc_ester putative p 96.9 0.0017 3.7E-08 70.3 7.2 68 699-775 1-74 (239)
108 PRK11138 outer membrane biogen 96.8 0.73 1.6E-05 53.8 28.5 187 151-377 80-282 (394)
109 cd07395 MPP_CSTP1 Homo sapiens 96.8 0.059 1.3E-06 59.2 18.0 28 884-911 195-222 (262)
110 cd07396 MPP_Nbla03831 Homo sap 96.7 0.0035 7.6E-08 69.1 7.9 73 699-777 2-88 (267)
111 cd00840 MPP_Mre11_N Mre11 nucl 96.7 0.0026 5.6E-08 67.7 6.5 73 699-777 1-91 (223)
112 TIGR00619 sbcd exonuclease Sbc 96.6 0.0042 9E-08 68.0 7.4 72 698-775 1-88 (253)
113 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.6 0.0043 9.3E-08 68.0 7.0 70 700-775 1-86 (262)
114 PRK04036 DNA polymerase II sma 96.5 0.0095 2.1E-07 71.5 9.8 79 697-777 243-345 (504)
115 PHA02546 47 endonuclease subun 96.4 0.0059 1.3E-07 69.8 7.1 72 698-775 1-89 (340)
116 cd07398 MPP_YbbF-LpxH Escheric 96.3 0.0075 1.6E-07 64.0 7.0 26 882-907 176-201 (217)
117 cd07402 MPP_GpdQ Enterobacter 96.3 0.011 2.3E-07 63.8 8.0 69 699-775 1-83 (240)
118 PRK11138 outer membrane biogen 96.3 1.5 3.3E-05 51.1 26.3 181 149-374 169-356 (394)
119 COG1409 Icc Predicted phosphoh 96.2 0.11 2.3E-06 57.5 15.7 74 699-779 2-82 (301)
120 KOG0918 Selenium-binding prote 96.2 0.00054 1.2E-08 76.0 -3.0 208 732-953 49-262 (476)
121 TIGR00024 SbcD_rel_arch putati 96.1 0.015 3.3E-07 62.3 7.7 69 698-776 15-103 (225)
122 cd08165 MPP_MPPE1 human MPPE1 96.0 0.0095 2.1E-07 60.2 5.4 43 733-775 41-89 (156)
123 PF13360 PQQ_2: PQQ-like domai 96.0 2.8 6E-05 44.6 26.8 181 150-374 46-233 (238)
124 cd00839 MPP_PAPs purple acid p 95.9 0.039 8.5E-07 61.5 10.5 37 883-919 181-217 (294)
125 PRK10966 exonuclease subunit S 95.9 0.012 2.6E-07 68.7 6.4 71 699-776 2-88 (407)
126 PRK11148 cyclic 3',5'-adenosin 95.9 0.018 3.9E-07 63.8 7.4 70 698-775 15-98 (275)
127 cd07383 MPP_Dcr2 Saccharomyces 95.8 0.025 5.5E-07 59.3 7.6 41 733-773 44-87 (199)
128 TIGR01640 F_box_assoc_1 F-box 95.7 1 2.2E-05 48.2 20.1 164 201-381 14-187 (230)
129 cd07386 MPP_DNA_pol_II_small_a 95.7 0.034 7.5E-07 60.4 8.4 42 733-776 38-95 (243)
130 cd07393 MPP_DR1119 Deinococcus 95.4 0.034 7.3E-07 60.0 7.2 45 882-928 180-227 (232)
131 cd08163 MPP_Cdc1 Saccharomyces 95.4 0.42 9E-06 52.4 15.6 30 882-913 203-232 (257)
132 TIGR03300 assembly_YfgL outer 95.4 7.1 0.00015 45.1 29.7 181 151-377 76-267 (377)
133 TIGR03300 assembly_YfgL outer 95.3 4.2 9.1E-05 47.0 24.7 185 148-377 113-305 (377)
134 TIGR00583 mre11 DNA repair pro 95.2 0.043 9.4E-07 63.8 7.7 73 698-776 4-124 (405)
135 cd07401 MPP_TMEM62_N Homo sapi 95.2 0.057 1.2E-06 59.2 8.0 27 887-913 190-216 (256)
136 PF13360 PQQ_2: PQQ-like domai 95.1 5.5 0.00012 42.3 26.6 182 151-377 4-199 (238)
137 COG2908 Uncharacterized protei 95.0 0.09 1.9E-06 55.8 8.5 196 702-945 2-229 (237)
138 PF12768 Rax2: Cortical protei 95.0 1.3 2.9E-05 49.0 17.9 114 148-273 14-130 (281)
139 cd08166 MPP_Cdc1_like_1 unchar 94.8 0.051 1.1E-06 56.7 6.1 42 733-774 45-92 (195)
140 cd08164 MPP_Ted1 Saccharomyces 94.7 0.077 1.7E-06 55.2 7.0 65 705-774 24-110 (193)
141 COG2129 Predicted phosphoester 94.6 3.6 7.8E-05 43.6 19.0 205 698-943 4-217 (226)
142 cd07384 MPP_Cdc1_like Saccharo 94.2 0.08 1.7E-06 54.3 5.9 43 733-775 48-100 (171)
143 cd07380 MPP_CWF19_N Schizosacc 94.2 0.1 2.3E-06 52.2 6.5 68 701-773 1-68 (150)
144 PF07893 DUF1668: Protein of u 94.1 1.2 2.6E-05 50.9 15.7 124 236-381 74-217 (342)
145 COG1408 Predicted phosphohydro 93.4 0.17 3.6E-06 56.3 6.9 71 698-776 45-119 (284)
146 COG1407 Predicted ICC-like pho 93.3 0.25 5.3E-06 52.8 7.6 76 692-777 13-112 (235)
147 cd00845 MPP_UshA_N_like Escher 92.7 0.2 4.2E-06 54.6 6.2 66 699-774 2-81 (252)
148 cd00216 PQQ_DH Dehydrogenases 92.7 21 0.00045 43.1 23.9 113 151-272 72-193 (488)
149 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.8 30 0.00065 42.1 23.8 111 151-271 80-198 (527)
150 PF07893 DUF1668: Protein of u 91.3 4.6 0.0001 46.3 15.4 111 151-274 87-217 (342)
151 PF06874 FBPase_2: Firmicute f 91.3 0.23 5.1E-06 59.3 4.9 70 883-954 507-586 (640)
152 PRK05137 tolB translocation pr 90.3 45 0.00097 39.5 25.5 192 149-379 181-374 (435)
153 PF14582 Metallophos_3: Metall 90.0 0.39 8.5E-06 50.6 4.6 74 698-777 6-104 (255)
154 PLN02533 probable purple acid 89.7 0.48 1E-05 55.9 5.7 25 884-908 311-335 (427)
155 COG4186 Predicted phosphoester 89.4 1.5 3.3E-05 43.4 7.8 40 733-776 48-87 (186)
156 cd00216 PQQ_DH Dehydrogenases 88.8 62 0.0013 39.0 27.4 119 148-271 173-328 (488)
157 cd07410 MPP_CpdB_N Escherichia 88.6 0.67 1.5E-05 51.3 5.6 20 887-906 209-229 (277)
158 KOG3662 Cell division control 88.3 0.84 1.8E-05 52.5 6.1 57 713-774 81-143 (410)
159 KOG0310 Conserved WD40 repeat- 87.2 32 0.0007 40.1 17.6 68 182-265 120-187 (487)
160 COG1311 HYS2 Archaeal DNA poly 86.6 12 0.00026 44.0 14.1 189 699-928 227-450 (481)
161 COG0420 SbcD DNA repair exonuc 86.5 1.6 3.5E-05 50.9 7.4 45 733-777 43-90 (390)
162 PRK03629 tolB translocation pr 85.1 89 0.0019 37.0 24.6 149 201-380 223-372 (429)
163 cd07378 MPP_ACP5 Homo sapiens 84.2 2 4.3E-05 47.4 6.4 23 884-906 190-212 (277)
164 KOG2055 WD40 repeat protein [G 83.8 48 0.001 38.6 16.8 148 184-372 269-418 (514)
165 cd07412 MPP_YhcR_N Bacillus su 82.9 1.8 3.8E-05 48.4 5.3 66 699-774 2-87 (288)
166 cd07387 MPP_PolD2_C PolD2 (DNA 82.7 38 0.00082 37.2 15.3 47 898-949 206-255 (257)
167 PRK04792 tolB translocation pr 82.4 1.2E+02 0.0025 36.2 24.6 191 149-379 197-390 (448)
168 cd07408 MPP_SA0022_N Staphyloc 80.8 2.8 6.1E-05 45.9 5.9 65 699-774 2-81 (257)
169 PF12768 Rax2: Cortical protei 79.7 28 0.00061 38.7 13.1 113 252-380 14-130 (281)
170 cd00094 HX Hemopexin-like repe 79.3 84 0.0018 32.7 17.4 151 179-374 11-178 (194)
171 TIGR02800 propeller_TolB tol-p 79.1 1.3E+02 0.0029 34.9 24.5 147 201-380 214-363 (417)
172 COG1520 FOG: WD40-like repeat 79.0 1.3E+02 0.0028 34.6 19.6 158 181-377 65-225 (370)
173 cd07411 MPP_SoxB_N Thermus the 78.5 4 8.7E-05 44.9 6.2 35 734-774 55-94 (264)
174 TIGR03075 PQQ_enz_alc_DH PQQ-d 78.2 1.5E+02 0.0032 36.2 20.0 131 180-327 65-201 (527)
175 KOG2055 WD40 repeat protein [G 75.2 40 0.00088 39.2 12.7 99 148-264 278-376 (514)
176 cd00842 MPP_ASMase acid sphing 74.3 5.3 0.00012 44.6 5.8 46 733-778 71-125 (296)
177 COG3855 Fbp Uncharacterized pr 73.7 3.6 7.9E-05 47.3 4.1 40 733-777 193-232 (648)
178 PF14583 Pectate_lyase22: Olig 73.1 1.2E+02 0.0027 35.1 16.2 225 150-425 60-303 (386)
179 PRK13684 Ycf48-like protein; P 72.1 1.8E+02 0.004 33.1 22.5 175 160-380 119-297 (334)
180 KOG0646 WD40 repeat protein [G 71.7 93 0.002 36.3 14.6 96 148-264 101-208 (476)
181 PRK04792 tolB translocation pr 71.1 2.3E+02 0.0049 33.7 21.5 142 150-318 242-384 (448)
182 PF02191 OLF: Olfactomedin-lik 71.1 1.6E+02 0.0036 32.1 18.4 159 172-349 66-236 (250)
183 PRK04922 tolB translocation pr 68.2 2.5E+02 0.0054 33.1 24.2 147 201-380 228-377 (433)
184 COG1768 Predicted phosphohydro 68.2 11 0.00023 38.5 5.6 79 733-831 46-126 (230)
185 PRK09419 bifunctional 2',3'-cy 68.2 7.8 0.00017 51.8 6.2 66 699-774 662-735 (1163)
186 PF08321 PPP5: PPP5 TPR repeat 68.0 11 0.00024 34.7 5.3 41 646-696 55-95 (95)
187 cd00094 HX Hemopexin-like repe 67.4 1.6E+02 0.0035 30.6 15.7 106 185-318 63-177 (194)
188 TIGR03074 PQQ_membr_DH membran 67.3 2.9E+02 0.0063 35.4 19.3 35 178-219 188-222 (764)
189 COG4880 Secreted protein conta 67.1 88 0.0019 36.3 12.9 184 148-381 404-600 (603)
190 KOG0649 WD40 repeat protein [G 67.0 1.6E+02 0.0034 31.9 14.0 157 159-350 98-263 (325)
191 TIGR03866 PQQ_ABC_repeats PQQ- 65.9 1.9E+02 0.0042 31.0 26.0 93 150-264 53-147 (300)
192 TIGR02800 propeller_TolB tol-p 65.5 2.6E+02 0.0057 32.3 23.2 141 150-317 214-355 (417)
193 cd07409 MPP_CD73_N CD73 ecto-5 65.1 14 0.0003 41.1 6.5 66 699-774 2-93 (281)
194 PF08268 FBA_3: F-box associat 64.6 62 0.0014 31.1 10.3 83 240-326 7-89 (129)
195 PF06433 Me-amine-dh_H: Methyl 62.1 1.2E+02 0.0027 34.5 13.1 103 148-264 15-128 (342)
196 KOG2863 RNA lariat debranching 61.6 12 0.00026 42.0 5.0 74 698-777 1-90 (456)
197 PRK01742 tolB translocation pr 60.7 3.4E+02 0.0073 32.0 22.6 140 201-379 228-369 (429)
198 PRK00178 tolB translocation pr 60.6 3.3E+02 0.0072 31.9 23.4 148 201-380 223-372 (430)
199 PRK05137 tolB translocation pr 60.4 3.4E+02 0.0074 31.9 22.9 195 150-380 226-421 (435)
200 COG1520 FOG: WD40-like repeat 60.0 3.2E+02 0.0068 31.4 16.9 156 148-315 161-319 (370)
201 PF04042 DNA_pol_E_B: DNA poly 57.9 16 0.00034 38.5 5.2 72 700-777 1-93 (209)
202 TIGR03866 PQQ_ABC_repeats PQQ- 56.9 2.8E+02 0.006 29.8 22.0 92 150-264 11-105 (300)
203 PF08268 FBA_3: F-box associat 56.6 1E+02 0.0022 29.6 10.2 86 289-380 3-89 (129)
204 TIGR00282 metallophosphoestera 55.2 24 0.00053 38.8 6.1 68 698-775 1-71 (266)
205 KOG3325 Membrane coat complex 55.1 48 0.001 32.9 7.2 103 700-845 3-107 (183)
206 KOG0306 WD40-repeat-containing 55.0 5.1E+02 0.011 32.5 17.1 95 151-264 337-444 (888)
207 PRK11028 6-phosphogluconolacto 53.2 3.7E+02 0.008 30.1 24.9 96 150-263 12-111 (330)
208 cd07406 MPP_CG11883_N Drosophi 53.1 25 0.00054 38.4 5.9 57 708-774 21-82 (257)
209 KOG1378 Purple acid phosphatas 53.0 39 0.00085 39.7 7.5 34 885-918 322-355 (452)
210 TIGR03074 PQQ_membr_DH membran 52.1 4.6E+02 0.01 33.6 17.4 35 231-272 188-222 (764)
211 KOG2476 Uncharacterized conser 51.8 34 0.00074 39.9 6.6 71 697-772 5-75 (528)
212 PF05096 Glu_cyclase_2: Glutam 51.6 1.8E+02 0.0039 32.0 11.9 92 150-264 68-159 (264)
213 PF10282 Lactonase: Lactonase, 50.3 4.3E+02 0.0093 30.0 16.4 175 176-380 145-333 (345)
214 PTZ00421 coronin; Provisional 50.0 5.4E+02 0.012 31.1 21.3 62 186-264 139-200 (493)
215 PF09910 DUF2139: Uncharacteri 49.5 4.2E+02 0.0091 29.7 19.9 134 114-268 46-185 (339)
216 PRK04922 tolB translocation pr 49.5 5E+02 0.011 30.6 23.1 190 149-378 227-418 (433)
217 COG0737 UshA 5'-nucleotidase/2 48.9 23 0.0005 43.0 5.2 71 697-774 26-114 (517)
218 cd07405 MPP_UshA_N Escherichia 48.8 24 0.00052 39.3 4.9 69 700-774 3-86 (285)
219 KOG1432 Predicted DNA repair e 47.2 48 0.001 37.4 6.7 44 733-776 103-148 (379)
220 PRK00178 tolB translocation pr 46.9 5.3E+02 0.012 30.1 21.9 183 150-373 223-408 (430)
221 PF08450 SGL: SMP-30/Gluconola 46.8 3.9E+02 0.0084 28.5 25.3 191 148-379 20-221 (246)
222 PRK04043 tolB translocation pr 46.7 5.5E+02 0.012 30.3 20.2 154 201-381 213-367 (419)
223 smart00284 OLF Olfactomedin-li 45.1 4.6E+02 0.0099 28.8 18.8 159 172-349 71-241 (255)
224 PRK02889 tolB translocation pr 43.9 6E+02 0.013 29.9 25.1 191 150-379 176-368 (427)
225 PTZ00235 DNA polymerase epsilo 43.4 62 0.0013 36.0 6.9 75 698-774 28-121 (291)
226 PLN00181 protein SPA1-RELATED; 42.8 8.4E+02 0.018 31.3 22.8 62 186-264 546-608 (793)
227 KOG0646 WD40 repeat protein [G 42.5 1.3E+02 0.0028 35.2 9.3 158 230-436 84-249 (476)
228 PF10282 Lactonase: Lactonase, 42.5 5.6E+02 0.012 29.1 20.1 202 151-382 16-235 (345)
229 PF09910 DUF2139: Uncharacteri 41.9 5.5E+02 0.012 28.8 18.2 136 253-421 77-219 (339)
230 cd07407 MPP_YHR202W_N Saccharo 41.3 39 0.00084 37.6 5.1 38 733-775 53-97 (282)
231 PF05096 Glu_cyclase_2: Glutam 41.1 4.5E+02 0.0098 29.0 12.9 115 230-375 47-161 (264)
232 cd00200 WD40 WD40 domain, foun 41.1 4.2E+02 0.0091 27.3 23.4 94 150-264 73-167 (289)
233 PTZ00420 coronin; Provisional 39.7 8.2E+02 0.018 30.2 21.0 61 186-264 139-199 (568)
234 PRK09420 cpdB bifunctional 2', 37.4 48 0.001 41.5 5.5 69 696-774 24-121 (649)
235 cd07382 MPP_DR1281 Deinococcus 37.0 78 0.0017 34.7 6.5 66 699-774 1-69 (255)
236 PF02897 Peptidase_S9_N: Proly 36.9 7.2E+02 0.016 28.8 20.1 204 149-379 149-366 (414)
237 cd08162 MPP_PhoA_N Synechococc 35.9 61 0.0013 36.7 5.6 69 700-774 3-90 (313)
238 PF14870 PSII_BNR: Photosynthe 35.5 6.9E+02 0.015 28.2 21.9 178 158-381 89-271 (302)
239 TIGR01390 CycNucDiestase 2',3' 34.8 51 0.0011 41.0 5.2 66 699-774 4-98 (626)
240 PRK09419 bifunctional 2',3'-cy 34.7 50 0.0011 44.4 5.4 21 884-904 256-277 (1163)
241 KOG0310 Conserved WD40 repeat- 34.7 7.8E+02 0.017 29.3 14.0 117 151-302 177-301 (487)
242 PLN00033 photosystem II stabil 34.6 8.2E+02 0.018 28.7 23.1 90 267-380 271-365 (398)
243 KOG3339 Predicted glycosyltran 34.1 1.2E+02 0.0027 31.3 6.7 92 732-828 40-144 (211)
244 PRK03629 tolB translocation pr 33.9 8.4E+02 0.018 28.7 21.6 191 149-379 222-414 (429)
245 KOG0308 Conserved WD40 repeat- 32.8 1E+03 0.023 29.4 15.0 69 184-264 129-203 (735)
246 PRK11028 6-phosphogluconolacto 32.6 7.4E+02 0.016 27.6 25.2 97 151-264 58-158 (330)
247 TIGR02658 TTQ_MADH_Hv methylam 31.6 8.6E+02 0.019 28.1 28.1 104 149-264 26-138 (352)
248 PRK11907 bifunctional 2',3'-cy 31.4 64 0.0014 41.3 5.3 67 698-774 116-212 (814)
249 COG5184 ATS1 Alpha-tubulin sup 29.2 7.8E+02 0.017 29.3 12.9 22 230-251 114-135 (476)
250 PF09637 Med18: Med18 protein; 27.8 63 0.0014 35.3 3.9 39 883-924 139-177 (250)
251 PRK04043 tolB translocation pr 27.6 1.1E+03 0.023 27.9 22.1 193 149-380 212-409 (419)
252 cd00200 WD40 WD40 domain, foun 27.5 6.8E+02 0.015 25.6 25.9 63 185-264 63-125 (289)
253 KOG3947 Phosphoesterases [Gene 26.8 82 0.0018 34.6 4.3 62 698-775 62-126 (305)
254 PTZ00421 coronin; Provisional 26.4 1.2E+03 0.026 28.1 18.8 51 240-302 139-190 (493)
255 PF03178 CPSF_A: CPSF A subuni 26.4 9.3E+02 0.02 26.8 13.4 101 150-272 62-167 (321)
256 PF02897 Peptidase_S9_N: Proly 26.0 1.1E+03 0.023 27.4 16.7 157 199-377 148-318 (414)
257 PF03178 CPSF_A: CPSF A subuni 25.7 9.6E+02 0.021 26.7 15.1 124 201-351 62-190 (321)
258 KOG0281 Beta-TrCP (transducin 25.6 3.3E+02 0.0071 30.9 8.6 99 227-355 319-421 (499)
259 TIGR00282 metallophosphoestera 25.2 75 0.0016 35.1 3.9 39 733-775 2-41 (266)
260 PRK13684 Ycf48-like protein; P 24.8 1.1E+03 0.023 26.9 21.4 197 159-423 34-233 (334)
261 PRK05583 ribosomal protein L7A 24.5 67 0.0015 30.1 2.9 69 875-944 13-90 (104)
262 PTZ00422 glideosome-associated 24.4 1.2E+02 0.0025 35.5 5.4 22 886-907 239-260 (394)
263 TIGR01530 nadN NAD pyrophospha 24.2 1.4E+02 0.0031 36.6 6.5 37 733-774 52-93 (550)
264 KOG1332 Vesicle coat complex C 24.1 9.7E+02 0.021 26.2 13.5 52 319-381 245-297 (299)
265 PF02239 Cytochrom_D1: Cytochr 21.5 1.3E+03 0.028 26.7 16.9 187 148-378 14-209 (369)
266 PF13088 BNR_2: BNR repeat-lik 21.2 7.6E+02 0.017 26.5 11.0 136 151-296 135-275 (275)
267 KOG4649 PQQ (pyrrolo-quinoline 20.9 1.2E+03 0.025 25.9 13.0 60 201-273 33-92 (354)
268 TIGR02658 TTQ_MADH_Hv methylam 20.6 1.3E+03 0.029 26.5 16.6 72 185-265 13-88 (352)
269 KOG2321 WD40 repeat protein [G 20.4 5.7E+02 0.012 31.1 9.8 102 146-264 151-260 (703)
270 PF14870 PSII_BNR: Photosynthe 20.1 1.3E+03 0.027 26.1 20.0 156 160-350 47-204 (302)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-78 Score=610.12 Aligned_cols=286 Identities=41% Similarity=0.729 Sum_probs=273.2
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcCCCCCCC
Q 001901 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (998)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g~~~~~~ 727 (998)
+++.|+.|++.. .+.+.++..||.++.+||.+|++|++++.|++|||||||||+||+.+|+..|.++..
T Consensus 3 ldr~ie~L~~~~----------li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t- 71 (303)
T KOG0372|consen 3 LDRQIEQLRRCE----------LIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPET- 71 (303)
T ss_pred HHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCC-
Confidence 578899988752 688999999999999999999999999999999999999999999999999988877
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhh
Q 001901 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (998)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (998)
+|+|||||||||.+|+|+++||++||++||++|+|||||||++.++..|||++||.+|||. ..+|+.++++|
T Consensus 72 -----~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~---~~vWr~c~eiF 143 (303)
T KOG0372|consen 72 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGS---ANVWRYCTEIF 143 (303)
T ss_pred -----ceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCC---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999995 47999999999
Q ss_pred cccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 001901 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (998)
Q Consensus 808 ~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (998)
++||++|+|+++|||||||++|.+.++++|+.+.|..+++.++ .++|||||||.+ ..||.-++||+| +.||.+++
T Consensus 144 dyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g-~m~DllWSDPee---~~g~~~SPRGaG-ylFG~dvv 218 (303)
T KOG0372|consen 144 DYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDG-AMCDLLWSDPEE---GPGWGLSPRGAG-YLFGEDVV 218 (303)
T ss_pred HhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCCC-cchheeccCccc---CCCcccCCCCcc-ccccHHHH
Confidence 9999999999999999999999999999999999999999877 899999999987 369999999999 78999999
Q ss_pred HHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCCceEEeEEeccCCCC
Q 001901 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 957 (998)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 957 (998)
++||+.||+++|+|+||.|++||++.++++|+|||||||||++++|.||||.++++....|++|...+..
T Consensus 219 ~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~lde~~~~~F~vFeaa~~~ 288 (303)
T KOG0372|consen 219 ESFLEANGLSLICRAHQLVMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILELDEDLDKDFRVFEAAPQE 288 (303)
T ss_pred HHHHHhCChHHHHHHHHHHHhhHHHhcCCceEEEecCCchhhhcCChHHheeeccccCcceEeeecchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999866543
No 2
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.8e-72 Score=619.55 Aligned_cols=321 Identities=47% Similarity=0.801 Sum_probs=287.4
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcC-CCCCC
Q 001901 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYG-SPSTA 726 (998)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g-~~~~~ 726 (998)
++++|..++..............|+.+||.+||.++.++|..+|+++++++||+|||||||||.||+++|+..| +|+..
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~~ 88 (331)
T KOG0374|consen 9 LDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPDQ 88 (331)
T ss_pred HHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCcc
Confidence 56677777765443333333455999999999999999999999999999999999999999999999999999 88766
Q ss_pred CCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhh
Q 001901 727 GDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRL 806 (998)
Q Consensus 727 ~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~ 806 (998)
+|||||||||||++|+|||.||+++|++||++||+||||||++.+|..|||++||.+||++ ..+|+.|+++
T Consensus 89 ------~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~---~~~w~~F~~~ 159 (331)
T KOG0374|consen 89 ------NYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGE---IKLWKAFNDA 159 (331)
T ss_pred ------cEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcch---HHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999975 4799999999
Q ss_pred hcccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHH
Q 001901 807 FNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDR 886 (998)
Q Consensus 807 f~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~ 886 (998)
|++||++|+|+++|+|+||||+|.+.++++|+.|.||.++++.+ +++|||||||.. .+.||.+|.||.+ +.||+++
T Consensus 160 f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~g-ll~DLlWsdp~~--~~~g~~~n~Rg~s-~~fg~~~ 235 (331)
T KOG0374|consen 160 FNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKG-LLCDLLWSDPDD--DVPGWEENDRGVS-FTFGPAV 235 (331)
T ss_pred HhhCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccc-eeeeeeecCCCC--CCCCcccCCCcee-eEecHHH
Confidence 99999999999999999999999999999999999998887766 999999999986 4789999999999 8999999
Q ss_pred HHHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCCceEEeEEeccCCCCCCCCCCCCc
Q 001901 887 VMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPE 966 (998)
Q Consensus 887 ~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 966 (998)
+++||+++++++||||||+|+||||+|++++++||||||+|||.++|+||+|.+++++.+.+++++|..... + +
T Consensus 236 v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~~~~~----~--~ 309 (331)
T KOG0374|consen 236 VEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEFDNAGAVMRVDKNLKCSFVILRPEGGID----K--D 309 (331)
T ss_pred HHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccccCCceEEEEECCCCeEEEEEeccccccc----c--c
Confidence 999999999999999999999999999999999999999999999999999999999999999999954111 0 1
Q ss_pred ccchhhHHHHhhcCCCCCCCC
Q 001901 967 RHIEDTWMQELNANRPPTPTR 987 (998)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~~~ 987 (998)
......|..+.+..++.++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~ 330 (331)
T KOG0374|consen 310 KIEALGVGSDKKAILSTSKLS 330 (331)
T ss_pred cccccccccccccccccccCC
Confidence 112234555566667666654
No 3
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-71 Score=550.37 Aligned_cols=286 Identities=37% Similarity=0.707 Sum_probs=270.3
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcCCCCCCC
Q 001901 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (998)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g~~~~~~ 727 (998)
.++.|+...+. ..|+++|+..||+.++++|..|.++..++.|+.|+|||||||.||+.+|+..|-.+..
T Consensus 6 ~d~wi~~vk~c----------kyLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~t- 74 (306)
T KOG0373|consen 6 LDQWIETVKKC----------KYLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDT- 74 (306)
T ss_pred HHHHHHHHHHc----------CCCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCc-
Confidence 45566665443 2689999999999999999999999999999999999999999999999999877655
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhh
Q 001901 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (998)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (998)
+|||+|||||||.+|+|++.+|++||.+||.+|.|||||||.+.+..+|||++||..|||.. .+|+.+.++|
T Consensus 75 -----nYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGna---n~wkycckVF 146 (306)
T KOG0373|consen 75 -----NYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNA---NVWKYCCKVF 146 (306)
T ss_pred -----ceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCc---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999975 7999999999
Q ss_pred cccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 001901 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (998)
Q Consensus 808 ~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (998)
+.|+++|+|+++|||||||++|.+.++++|+-|.|-.+++.++ .+|||+||||.+ ++.|.-++||+| +.||.+++
T Consensus 147 D~LtlaAiID~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G-~fcDlmWSDPed---ve~W~vSpRGAG-wlFGskVt 221 (306)
T KOG0373|consen 147 DFLTLAAIIDEKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEG-PFCDLMWSDPED---VETWAVSPRGAG-WLFGSKVT 221 (306)
T ss_pred hhhhHHHHhcCcEEEEcCCCCccceeHHHHHhHHhhccCCCCC-CccceeccChhh---hhhheeCCCCcc-eeechhhh
Confidence 9999999999999999999999999999999999999999887 899999999985 788999999999 57999999
Q ss_pred HHHHHHcCCcEEEEcccccccceEEecCCe-EEEEeccccccCCCCCeEEEEEEcCCceEEeEEeccCCCC
Q 001901 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGH-LITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 957 (998)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~-~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 957 (998)
++|+..|+|++|+|+||.|++||++.+++| |+|||||||||++++|.|+||.++++++-++|+|..+|..
T Consensus 222 ~eF~~iN~L~LicRaHQLV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~d~~~~r~~k~F~avpd~ 292 (306)
T KOG0373|consen 222 TEFNHINNLNLICRAHQLVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSFDDNLERETKIFSAVPDN 292 (306)
T ss_pred HHHHhccchHHHHhHHHHHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEecccCCccceeeeecCCc
Confidence 999999999999999999999999988888 9999999999999999999999999999999999988765
No 4
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=9.4e-69 Score=588.46 Aligned_cols=294 Identities=46% Similarity=0.835 Sum_probs=275.4
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcCCCCCCC
Q 001901 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (998)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g~~~~~~ 727 (998)
++++|+.+++.+.+++. ....|++++|.+||++|+++|++||+++++..|++|||||||||.+|.++|+..++++..
T Consensus 11 ~~~~i~~~~~~~~~~~~--~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~- 87 (320)
T PTZ00480 11 VDNIIERLLSVRGSKPG--KNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPES- 87 (320)
T ss_pred HHHHHHHHHhccccCcc--ccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcc-
Confidence 78899999987666542 234689999999999999999999999999999999999999999999999999998765
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhh
Q 001901 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (998)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (998)
+|||||||||||++++||+.+|++||+.||.+|++||||||.+.++..|||+.||..+|+ ..+|..++++|
T Consensus 88 -----~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~----~~l~~~~~~~F 158 (320)
T PTZ00480 88 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT----IKLWKTFTDCF 158 (320)
T ss_pred -----eEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999995 36999999999
Q ss_pred cccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 001901 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (998)
Q Consensus 808 ~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (998)
++||+||+|+++||||||||+|.+.++++|+.+.||.+.+..+ +++|+|||||.+ ...+|.+|+||.| +.||++++
T Consensus 159 ~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWSDP~~--~~~~~~~s~RG~g-~~FG~~~~ 234 (320)
T PTZ00480 159 NCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTG-LLCDLLWSDPDK--DVQGWADNERGVS-YVFSQEIV 234 (320)
T ss_pred HhccHhheecCcEEEEcCCcCcccCCHHHHhcccCCCCCCccc-hhhheeecCccc--ccCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887654 899999999986 3578999999999 68999999
Q ss_pred HHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCCceEEeEEeccCCCC
Q 001901 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 957 (998)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 957 (998)
++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++.|.|.+..
T Consensus 235 ~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 235 QVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQG 304 (320)
T ss_pred HHHHHhCCCcEEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccEEEEEECCCCcEeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999877654
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=3.8e-68 Score=584.82 Aligned_cols=286 Identities=33% Similarity=0.604 Sum_probs=256.6
Q ss_pred hhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecC----CeEEEecCCCCHHHHHHHHHHcC
Q 001901 646 SVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKA----PIKIFGDLHGQFGDLMRLFDEYG 721 (998)
Q Consensus 646 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~----~i~vvGDiHG~~~dL~~il~~~g 721 (998)
+.++++|+.|++.. .|+++++.+||++|+++|++||+|+++.. |++|||||||||.+|+++|+..|
T Consensus 5 ~~~~~~i~~~~~~~----------~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g 74 (321)
T cd07420 5 DHIDALIEAFKEKQ----------LLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNG 74 (321)
T ss_pred HHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcC
Confidence 34788999998742 47899999999999999999999999986 89999999999999999999999
Q ss_pred CCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhh
Q 001901 722 SPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWH 801 (998)
Q Consensus 722 ~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~ 801 (998)
+++... +|||||||||||++|+||+.+|++||++||++|++||||||.+.++..|||++||..+|+.. ...+|.
T Consensus 75 ~~~~~~-----~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~-~~~l~~ 148 (321)
T cd07420 75 LPSPEN-----PYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLH-GKKILR 148 (321)
T ss_pred CCCccc-----eEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCcc-HHHHHH
Confidence 886432 79999999999999999999999999999999999999999999999999999999999863 467999
Q ss_pred hhhhhhcccceeEEEcCeEEEecCCccCcccCHHhhhhccCCccc-----CC---------------------CCcceec
Q 001901 802 RINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITM-----EA---------------------GSIVLMD 855 (998)
Q Consensus 802 ~~~~~f~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~-----~~---------------------~~~~~~d 855 (998)
.++++|++||+||+|+++||||||||++ ..++++|+.|+|+... +. +..++.|
T Consensus 149 ~~~~~F~~LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 227 (321)
T cd07420 149 LLEDVFSWLPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILD 227 (321)
T ss_pred HHHHHHHhCCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhhe
Confidence 9999999999999999999999999997 5789999999885211 11 0136789
Q ss_pred cccCCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCeE
Q 001901 856 LLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAG 935 (998)
Q Consensus 856 lLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~g 935 (998)
+|||||.+. ...|.++.||.| +.||++++++||++||+++||||||++++||+++++++|||||||+||||..+|+|
T Consensus 228 lLWSDP~~~--~~~~~~~~RG~g-~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~g 304 (321)
T cd07420 228 ILWSDPKAQ--KGCKPNTFRGGG-CYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRG 304 (321)
T ss_pred eeecCCccC--CCCCccCCCCCc-cccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccE
Confidence 999999853 233666789999 68999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCceEEeEEe
Q 001901 936 AILVLGRDLVVVPKLI 951 (998)
Q Consensus 936 a~l~~~~~~~~~~~~~ 951 (998)
|+|++++++.+.+..|
T Consensus 305 avl~i~~~~~~~f~~~ 320 (321)
T cd07420 305 AYIKLGPDLTPHFVQY 320 (321)
T ss_pred EEEEECCCCceeEEEe
Confidence 9999999988877655
No 6
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=1.5e-67 Score=584.54 Aligned_cols=303 Identities=79% Similarity=1.341 Sum_probs=279.2
Q ss_pred HHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcCCCCCC--CC
Q 001901 651 VIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTA--GD 728 (998)
Q Consensus 651 ~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g~~~~~--~~ 728 (998)
+|++||+|+.|+++...++.|+++++.+||++|+++|++||+++++..|++|||||||||.+|.++|+.+|+++.. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~ 80 (311)
T cd07419 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80 (311)
T ss_pred ChHHhcCcccccCccccccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCC
Confidence 4788999999999888888999999999999999999999999999999999999999999999999999988641 22
Q ss_pred ccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCC--cchhhhhhhhhh
Q 001901 729 IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGER--DGIWAWHRINRL 806 (998)
Q Consensus 729 ~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~--~~~~~~~~~~~~ 806 (998)
....+|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||..||..+|+.. ....+|..++++
T Consensus 81 ~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~ 160 (311)
T cd07419 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRL 160 (311)
T ss_pred CcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHH
Confidence 222379999999999999999999999999999999999999999999999999999999999862 235699999999
Q ss_pred hcccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCC---CCCCc-eee
Q 001901 807 FNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNA---RGPGL-VTF 882 (998)
Q Consensus 807 f~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~---rg~~~-~~f 882 (998)
|++||+++++++++|||||||+|.+.++++|+.+.||...+....+++|+|||||.+.+...+|.++. ||.|. +.|
T Consensus 161 f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~f 240 (311)
T cd07419 161 FEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240 (311)
T ss_pred HHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeE
Confidence 99999999999999999999999999999999999998544444589999999999765567888886 99995 799
Q ss_pred CHHHHHHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCCceEEeEEecc
Q 001901 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHP 953 (998)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 953 (998)
|++++++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|++++++.+.|++|+|
T Consensus 241 g~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~~~~~~~~~ 311 (311)
T cd07419 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDLTIIPKLIHP 311 (311)
T ss_pred CHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 7
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=5.6e-67 Score=571.14 Aligned_cols=284 Identities=43% Similarity=0.778 Sum_probs=267.3
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcCCCCCCC
Q 001901 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (998)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g~~~~~~ 727 (998)
++++|+++++.. .|+.+++.+||++|+++|++||+++++..|++|||||||||.+|+++|+..++++..
T Consensus 2 ~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~- 70 (285)
T cd07415 2 LDKWIEQLKKCE----------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDT- 70 (285)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCC-
Confidence 467888887642 478999999999999999999999999999999999999999999999999987765
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhh
Q 001901 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (998)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (998)
+|||||||||||++|+||+.+|++||+.+|.+|++||||||.+.++..|||.+||..+|+. ..+|+.++++|
T Consensus 71 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~---~~l~~~~~~~f 142 (285)
T cd07415 71 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGN---ANVWKYCTDLF 142 (285)
T ss_pred -----eEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCc---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999975 36999999999
Q ss_pred cccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 001901 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (998)
Q Consensus 808 ~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (998)
++||++|++++++|||||||+|.+.++++|+.++||.+++..+ ++.|+|||||.+. .+|.+|.||.| +.||++++
T Consensus 143 ~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~-~~~dllWsDP~~~---~~~~~~~Rg~g-~~fg~~~~ 217 (285)
T cd07415 143 DYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEG-PMCDLLWSDPDDI---EGWGISPRGAG-YLFGQDVV 217 (285)
T ss_pred HHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccCCCCCCCCC-CccceEecCCCcc---CCCCcCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887655 8899999999863 68999999999 68999999
Q ss_pred HHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCCceEEeEEeccCC
Q 001901 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLP 955 (998)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 955 (998)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.+++++++.++.|.|.+
T Consensus 218 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i~~~~~~~~~~~~~~~ 285 (285)
T cd07415 218 EEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAAP 285 (285)
T ss_pred HHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988753
No 8
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=3.5e-67 Score=573.72 Aligned_cols=291 Identities=38% Similarity=0.750 Sum_probs=270.2
Q ss_pred hhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcCCCCC
Q 001901 646 SVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPST 725 (998)
Q Consensus 646 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g~~~~ 725 (998)
++++++|..+++...+.. .....++.++|.+||++|+++|++||+++++..|++|||||||||.+|+++|+..++++.
T Consensus 2 ~~~~~~i~~~~~~~~~~~--~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~ 79 (294)
T PTZ00244 2 SLVQTLIEKMLTVKGNRT--QRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPY 79 (294)
T ss_pred chHHHHHHHHHhcccCCC--ccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCc
Confidence 356888888888654432 234478999999999999999999999999999999999999999999999999999876
Q ss_pred CCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhh
Q 001901 726 AGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINR 805 (998)
Q Consensus 726 ~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~ 805 (998)
+ +|||||||||||++|+||+.+|+++|+.+|.++++||||||.+.++..|||.+||..+|+ ..+|..+++
T Consensus 80 ~------~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~ 149 (294)
T PTZ00244 80 S------NYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN----IKLFKAFTD 149 (294)
T ss_pred c------cEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh----HHHHHHHHH
Confidence 5 899999999999999999999999999999999999999999999999999999999996 359999999
Q ss_pred hhcccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHH
Q 001901 806 LFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPD 885 (998)
Q Consensus 806 ~f~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~ 885 (998)
+|++||++|++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.+ ...+|.+|+||.| +.||++
T Consensus 150 ~f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~ 225 (294)
T PTZ00244 150 VFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRG-ILCDLLWADPED--EVRGFLESDRGVS-YLFGED 225 (294)
T ss_pred HHHhCchheEecCeeEEEcCCCCchhhHHHHhhhhccccCCCccc-hhheeeecCccc--ccCCCCcCCCCCc-cccCHH
Confidence 999999999999999999999999999999999999999887654 899999999985 3578999999999 689999
Q ss_pred HHHHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCCceEEeEEec
Q 001901 886 RVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIH 952 (998)
Q Consensus 886 ~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~ 952 (998)
++++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++.|.
T Consensus 226 ~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~f~~~~ 292 (294)
T PTZ00244 226 IVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIP 292 (294)
T ss_pred HHHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCccccCCCCceEEEEEECCCCcEeEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 9
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=4.6e-67 Score=574.00 Aligned_cols=291 Identities=48% Similarity=0.865 Sum_probs=270.9
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcCCCCCCC
Q 001901 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (998)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g~~~~~~ 727 (998)
++++|+.+++.+.++. .....|+++++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..|+++.+
T Consensus 2 ~~~~i~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~- 78 (293)
T cd07414 2 IDSIIERLLEVRGSRP--GKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPES- 78 (293)
T ss_pred HHHHHHHHHhccccCC--cccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcc-
Confidence 4678888887665543 2344689999999999999999999999999999999999999999999999999998765
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhh
Q 001901 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (998)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (998)
+|||||||||||++++||+.+|++||+.||.++++||||||.+.++..|||.+||..+|+ ..+|..++++|
T Consensus 79 -----~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~f 149 (293)
T cd07414 79 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN----IKLWKTFTDCF 149 (293)
T ss_pred -----eEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999986 45999999999
Q ss_pred cccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 001901 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (998)
Q Consensus 808 ~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (998)
++||++|++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 150 ~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~ 225 (293)
T cd07414 150 NCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQG-LLCDLLWSDPDK--DVQGWGENDRGVS-FTFGKDVV 225 (293)
T ss_pred HHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccCCCCCCchh-hHhhhhccCccc--ccCCCccCCCCcc-eecCHHHH
Confidence 9999999999999999999999999999999999999877654 899999999986 3578999999999 68999999
Q ss_pred HHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCCceEEeEEeccC
Q 001901 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPL 954 (998)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~ 954 (998)
++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++.|.|.
T Consensus 226 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~~~~~~~~ 292 (293)
T cd07414 226 AKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPA 292 (293)
T ss_pred HHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCcccCCCCceEEEEEECCCCcEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988753
No 10
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=1.1e-66 Score=571.47 Aligned_cols=286 Identities=41% Similarity=0.749 Sum_probs=266.7
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcCCCCCCC
Q 001901 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (998)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g~~~~~~ 727 (998)
++++|+.+++.. .|+++++.+||++|+++|++||+++++..|++|||||||||.+|.++|+..+.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~- 71 (303)
T PTZ00239 3 IDRHIATLLNGG----------CLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNA- 71 (303)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 577888887642 478999999999999999999999999999999999999999999999999987655
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhh
Q 001901 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (998)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (998)
+|||||||||||++++||+.+|++||+.||.+|++||||||.+.++..|||.+||.++|+.. .+|+.++++|
T Consensus 72 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~---~~~~~~~~~f 143 (303)
T PTZ00239 72 -----NYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNS---NPWRLFMDVF 143 (303)
T ss_pred -----eEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcCh---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999853 5899999999
Q ss_pred cccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 001901 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (998)
Q Consensus 808 ~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (998)
++||++|+|++++|||||||+|.+.++++|+.+.||.+++..+ +++|+|||||.+ ..+|.+|.||.| +.||++++
T Consensus 144 ~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~~~Rg~g-~~fg~~~~ 218 (303)
T PTZ00239 144 DCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEG-PFCDLMWSDPEE---VEYWAVNSRGAG-YLFGAKVT 218 (303)
T ss_pred HhCchheEEcCeEEEEcCccCcccccHhhhccccCCCCCCCCC-CceeeEecCccc---cCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887655 789999999985 468999999999 68999999
Q ss_pred HHHHHHcCCcEEEEcccccccceEEecC-CeEEEEeccccccCCCCCeEEEEEEcCCceEEeEEeccCCCC
Q 001901 888 MEFCNNNDLQLIVRAHECVMDGFERFAQ-GHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 957 (998)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~-~~~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 957 (998)
++||++||+++||||||++++||+++++ ++|||||||||||+..+|+||+|.+++++.+.++.|.|.+..
T Consensus 219 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i~~~~~~~~~~~~~~~~~ 289 (303)
T PTZ00239 219 KEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPES 289 (303)
T ss_pred HHHHHHCCCcEEEEcChhhccceEEEeCCCeEEEEECCCcccCCCCceEEEEEECCCCcEeeEEeeCCCcc
Confidence 9999999999999999999999998765 559999999999999999999999999999999999987654
No 11
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=1.3e-65 Score=566.79 Aligned_cols=294 Identities=35% Similarity=0.640 Sum_probs=269.9
Q ss_pred CChhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCC----eEEEecCCCCHHHHHHHHHH
Q 001901 644 INSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAP----IKIFGDLHGQFGDLMRLFDE 719 (998)
Q Consensus 644 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~----i~vvGDiHG~~~dL~~il~~ 719 (998)
+.++++++|+.+++.+ .|+.+++.+||++|+++|++||+++++..| ++|||||||||.+|+++|+.
T Consensus 12 ~~~~~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~ 81 (316)
T cd07417 12 TLEFVKEMIEWFKDQK----------KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL 81 (316)
T ss_pred CHHHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence 4567899999988742 478999999999999999999999999866 99999999999999999999
Q ss_pred cCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhh
Q 001901 720 YGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWA 799 (998)
Q Consensus 720 ~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~ 799 (998)
.|+++... +|||||||||||++|+|||.+|++||+.+|++|++||||||.+.++..|||..||..+|+. .+
T Consensus 82 ~g~~~~~~-----~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~----~l 152 (316)
T cd07417 82 NGLPSETN-----PYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNE----QM 152 (316)
T ss_pred cCCCCccC-----eEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccH----HH
Confidence 99876542 7999999999999999999999999999999999999999999999999999999999864 59
Q ss_pred hhhhhhhhcccceeEEEcCeEEEecCCc-cCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCC
Q 001901 800 WHRINRLFNWLPLAALIEKKIICMHGGI-GRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPG 878 (998)
Q Consensus 800 ~~~~~~~f~~LP~aa~i~~~il~vHgGi-~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~ 878 (998)
|..++++|++||+++++++++||||||| ++.+.++++|++++||.+.+..+ +++|+|||||.+. .+|.+|.||.|
T Consensus 153 ~~~~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~---~~~~~s~Rg~g 228 (316)
T cd07417 153 FDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSG-LMCELLWSDPQPQ---PGRSPSKRGVG 228 (316)
T ss_pred HHHHHHHHHhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccc-cceeeeecCCCCC---CCCCccCCCCc
Confidence 9999999999999999999999999999 56788999999999998776544 8999999999863 57999999999
Q ss_pred ceeeCHHHHHHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcC-CceEEeEEeccCCCC
Q 001901 879 LVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGR-DLVVVPKLIHPLPPA 957 (998)
Q Consensus 879 ~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~~-~~~~~~~~~~~~~~~ 957 (998)
+.||++++++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|+|++ ++.+.++.|.+.+..
T Consensus 229 -~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~ 307 (316)
T cd07417 229 -CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHP 307 (316)
T ss_pred -eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999 899999999887666
Q ss_pred CCCC
Q 001901 958 ISSP 961 (998)
Q Consensus 958 ~~~~ 961 (998)
...|
T Consensus 308 ~~~~ 311 (316)
T cd07417 308 NVKP 311 (316)
T ss_pred CCCc
Confidence 5433
No 12
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=7.3e-65 Score=560.38 Aligned_cols=288 Identities=35% Similarity=0.623 Sum_probs=262.3
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcCCCCCCC
Q 001901 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (998)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g~~~~~~ 727 (998)
++-+++++++.. .|+++++.+||++|+++|++||++++++.|++||||||||+.||.++|+..+.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~- 71 (305)
T cd07416 3 IDVLKAHFMREG----------RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANT- 71 (305)
T ss_pred HHHHHHHHHcCC----------CCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 345666776542 478999999999999999999999999999999999999999999999999988765
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhh
Q 001901 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (998)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (998)
+|||||||||||++|+||+.+|++||+.||.+|++||||||.+.++..|||..||..+|+ ..+|..++++|
T Consensus 72 -----~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~----~~l~~~~~~~f 142 (305)
T cd07416 72 -----RYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMEAF 142 (305)
T ss_pred -----eEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhcc----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999885 46899999999
Q ss_pred cccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCC----CCcccC-CCCCCceee
Q 001901 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSV----EGLRPN-ARGPGLVTF 882 (998)
Q Consensus 808 ~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~----~~~~~n-~rg~~~~~f 882 (998)
++||+++++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||...+.. .+|.+| .||.| +.|
T Consensus 143 ~~LPlaaii~~~i~~vHGGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g-~~f 220 (305)
T cd07416 143 DCLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFG-PMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCS-YFY 220 (305)
T ss_pred hhccceeEEcCCEEEEcCCCCcccccHHHhcccCCCCCCCCCC-cceeeeecCcccccccccccccccccCCCCCc-eec
Confidence 9999999999999999999999999999999999998877654 8999999999764321 257776 89999 789
Q ss_pred CHHHHHHHHHHcCCcEEEEcccccccceEEecCC------eEEEEeccccccCCCCCeEEEEEEcCCceEEeEEeccCCC
Q 001901 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQG------HLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPP 956 (998)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~------~~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~ 956 (998)
|++++++||++||+++||||||++++||++++++ +||||||||||||..+|+||+|.++++. +.++.|.+.+.
T Consensus 221 G~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~~-~~~~~~~~~~~ 299 (305)
T cd07416 221 SYRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPH 299 (305)
T ss_pred CHHHHHHHHHHcCCeEEEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEEcCCc-ceEEEecCCCC
Confidence 9999999999999999999999999999998886 9999999999999999999999999985 68888887765
Q ss_pred CC
Q 001901 957 AI 958 (998)
Q Consensus 957 ~~ 958 (998)
.+
T Consensus 300 ~~ 301 (305)
T cd07416 300 PY 301 (305)
T ss_pred CC
Confidence 43
No 13
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=1.5e-64 Score=550.67 Aligned_cols=269 Identities=47% Similarity=0.903 Sum_probs=255.2
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHH
Q 001901 671 LDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLET 750 (998)
Q Consensus 671 ~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~ev 750 (998)
++++++.+||++|+++|++||++++++.|++||||||||+.+|.++|+..+.++.. +|||||||||||++++||
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~------~~vfLGD~VDrG~~s~e~ 74 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDT------NYVFLGDYVDRGPFSIEV 74 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCc------eEEEeCCccCCCCChHHH
Confidence 35789999999999999999999999999999999999999999999999987665 899999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhhcccceeEEEcCeEEEecCCccCc
Q 001901 751 ITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRS 830 (998)
Q Consensus 751 l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~~~il~vHgGi~~~ 830 (998)
+.+|++||+.+|.+|++||||||.+.++..|||.+||..+|+. .+|+.++++|++||++|++++++|||||||+|.
T Consensus 75 l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~----~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~ 150 (271)
T smart00156 75 ILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGE----EIYEKFQEAFSWLPLAALIDNKILCMHGGLSPD 150 (271)
T ss_pred HHHHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcCH----HHHHHHHHHHhhChhheEEcCeEEEEecCCCCc
Confidence 9999999999999999999999999999999999999999963 699999999999999999999999999999999
Q ss_pred ccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCcEEEEcccccccce
Q 001901 831 INHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGF 910 (998)
Q Consensus 831 ~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~ 910 (998)
+.++++|+.+.||.+.+... ++.|+|||||.. ...+|.+|.||.| +.||++++++||++||+++||||||++++||
T Consensus 151 ~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~ 226 (271)
T smart00156 151 LTTLDDIRKLKRPQEPPDEG-LLIDLLWSDPDQ--PVDGFQPSIRGAS-YYFGPDAVDEFLKKNNLKLIIRAHQVVDDGY 226 (271)
T ss_pred cCCHHHHhcccCCCCCCchh-hhhheeecCCCc--ccCCCccCCCCCc-cccCHHHHHHHHHHCCCeEEEecCcccCCcE
Confidence 99999999999998876554 899999999974 3578999999999 6899999999999999999999999999999
Q ss_pred EEecCCeEEEEeccccccCCCCCeEEEEEEcCCceEEeEEecc
Q 001901 911 ERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHP 953 (998)
Q Consensus 911 ~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 953 (998)
+++++++|||||||+|||+..+|+||+|.+++++.+.++.+.|
T Consensus 227 ~~~~~~~~~TvfSa~~y~~~~~n~~a~~~i~~~~~~~~~~~~~ 269 (271)
T smart00156 227 EFFHDRKLVTIFSAPNYCGRFGNKAAVLKVDKDLKLSFEQFKP 269 (271)
T ss_pred EEecCCcEEEEECCcccccCCCceEEEEEECCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999988875
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=1.6e-62 Score=546.76 Aligned_cols=300 Identities=33% Similarity=0.577 Sum_probs=258.8
Q ss_pred CChhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeec----CCeEEEecCCCCHHHHHHHHHH
Q 001901 644 INSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLK----APIKIFGDLHGQFGDLMRLFDE 719 (998)
Q Consensus 644 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~----~~i~vvGDiHG~~~dL~~il~~ 719 (998)
+.+.++.+|+.+.....--++......|+.++|.+||++|+++|++||++++++ .|++||||||||+.+|+++|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~ 87 (377)
T cd07418 8 TNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLED 87 (377)
T ss_pred CHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHH
Confidence 345678888887543221123334456899999999999999999999999998 8999999999999999999999
Q ss_pred cCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhh
Q 001901 720 YGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWA 799 (998)
Q Consensus 720 ~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~ 799 (998)
.|+++.+. +|||||||||||++|+|||.+|++||+.||.+|++||||||.+.++..|||.+||..+|+.. +..+
T Consensus 88 ~g~~~~~~-----~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~-~~~l 161 (377)
T cd07418 88 AGFPDQNR-----FYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDK-GKHV 161 (377)
T ss_pred hCCCCCCc-----eEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCch-HHHH
Confidence 99886542 69999999999999999999999999999999999999999999999999999999999864 4579
Q ss_pred hhhhhhhhcccceeEEEcCeEEEecCCc---------------------------cCcccCHHhhhhccCCc-ccCCCC-
Q 001901 800 WHRINRLFNWLPLAALIEKKIICMHGGI---------------------------GRSINHVEQIENLQRPI-TMEAGS- 850 (998)
Q Consensus 800 ~~~~~~~f~~LP~aa~i~~~il~vHgGi---------------------------~~~~~~~~~i~~i~rp~-~~~~~~- 850 (998)
|+.++++|++||++++|++++||||||| ++.+.++++|+.++||. +++..+
T Consensus 162 ~~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~ 241 (377)
T cd07418 162 YRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGS 241 (377)
T ss_pred HHHHHHHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCc
Confidence 9999999999999999999999999999 34567999999999985 444332
Q ss_pred -cceeccccCCCCCCCCCCCcccC-CCCCCceeeCHHHHHHHHHHcCCcEEEEcccc------------cccceEEecC-
Q 001901 851 -IVLMDLLWSDPTENDSVEGLRPN-ARGPGLVTFGPDRVMEFCNNNDLQLIVRAHEC------------VMDGFERFAQ- 915 (998)
Q Consensus 851 -~~~~dlLWsDP~~~~~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~------------~~~G~~~~~~- 915 (998)
.+++|||||||.. ..+|.+| .||.| +.||++++++||++|++++||||||| |++||+++++
T Consensus 242 ~~i~~dlLWSDP~~---~~g~~~~~~RG~g-~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~ 317 (377)
T cd07418 242 NLIPGDVLWSDPSL---TPGLSPNKQRGIG-LLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDV 317 (377)
T ss_pred cccceeeEeeCCcc---CCCCCccCCCCCc-cccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccC
Confidence 2478999999986 3578777 79999 68999999999999999999999996 7899999887
Q ss_pred --CeEEEEecccccc------CCCCCeEEEEEEcCCc--eEEeEEecc
Q 001901 916 --GHLITLFSATNYC------GTANNAGAILVLGRDL--VVVPKLIHP 953 (998)
Q Consensus 916 --~~~iTvfSa~~y~------~~~~n~ga~l~~~~~~--~~~~~~~~~ 953 (998)
++||||||||||| +..+|+||+++++.+- ...++.|..
T Consensus 318 ~~~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~~ 365 (377)
T cd07418 318 ESGKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFEA 365 (377)
T ss_pred CCCcEEEEecCCccccccccccccCcceEEEEEecCCCCCccceEeec
Confidence 9999999999999 5789999999996643 455555543
No 15
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=5.8e-63 Score=518.44 Aligned_cols=273 Identities=37% Similarity=0.657 Sum_probs=250.9
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHH
Q 001901 670 FLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLE 749 (998)
Q Consensus 670 ~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~e 749 (998)
.|+++..+.|+.++..+|++|++++++.+||.|||||||||.||+++|+..|.|... +|+|||||||||.+|+|
T Consensus 60 rl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t------~YLFLGDYVDRGyFSiE 133 (517)
T KOG0375|consen 60 RLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANT------RYLFLGDYVDRGYFSIE 133 (517)
T ss_pred chhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccc------eeEeeccccccceeeee
Confidence 578999999999999999999999999999999999999999999999999988776 89999999999999999
Q ss_pred HHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhhcccceeEEEcCeEEEecCCccC
Q 001901 750 TITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGR 829 (998)
Q Consensus 750 vl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~~~il~vHgGi~~ 829 (998)
|+.+|.+||+.||..++|||||||++.+..+|.|..||..||.+ .+|+.+.+.|+.||+||+.++.+|||||||+|
T Consensus 134 CvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse----~vYdaCmesFd~LPLAAlmNqQflCVHGGlSP 209 (517)
T KOG0375|consen 134 CVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE----RVYDACMESFDCLPLAALMNQQFLCVHGGLSP 209 (517)
T ss_pred hHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccH----HHHHHHHHHhccchHHHHhcCceEEecCCCCc
Confidence 99999999999999999999999999999999999999999965 59999999999999999999999999999999
Q ss_pred cccCHHhhhhccCCcccCCCCcceeccccCCCCCCC----CCCCcccC-CCCCCceeeCHHHHHHHHHHcCCcEEEEccc
Q 001901 830 SINHVEQIENLQRPITMEAGSIVLMDLLWSDPTEND----SVEGLRPN-ARGPGLVTFGPDRVMEFCNNNDLQLIVRAHE 904 (998)
Q Consensus 830 ~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~----~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~ 904 (998)
.+.+++||++|.|..+++..+ .+||||||||.++. ..+.|.+| .||++ |.|.-.++.+||+.|||--|||+||
T Consensus 210 Ei~tl~DIr~l~RF~EpPa~G-pmCDLLWsDPlEdfgnek~~e~f~hNsvRGCS-yfysy~A~C~FLq~nnLLSIiRAHE 287 (517)
T KOG0375|consen 210 EIHTLDDIRKLDRFKEPPAFG-PMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCS-YFYSYPAVCEFLQNNNLLSIIRAHE 287 (517)
T ss_pred ccccHHHHHhhhhccCCCccC-cchhhhccChhhhccccccccccccCcccccc-ceechHHHHHHHHhCCchhhhhhhh
Confidence 999999999999999999877 89999999998742 13456666 79998 7899999999999999999999999
Q ss_pred ccccceEEecCC------eEEEEeccccccCCCCCeEEEEEEcCCceEEeEEeccCC
Q 001901 905 CVMDGFERFAQG------HLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLP 955 (998)
Q Consensus 905 ~~~~G~~~~~~~------~~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 955 (998)
.+..||+.+-.. .||||||||||.+.++|+||||..+++. +....|.-.|
T Consensus 288 AQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnNV-MNIRQFncSP 343 (517)
T KOG0375|consen 288 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSP 343 (517)
T ss_pred hhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhccc-ceeeccCCCC
Confidence 999999987654 4899999999999999999999998764 3444554333
No 16
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-62 Score=497.52 Aligned_cols=286 Identities=40% Similarity=0.706 Sum_probs=268.6
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeecCCeEEEecCCCCHHHHHHHHHHcCCCCCCC
Q 001901 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAG 727 (998)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~dL~~il~~~g~~~~~~ 727 (998)
++.-|..|.+.+ .+++.++..||+.|+++|.+|.+|..++.|++||||+||||+||+++|+..|..+..
T Consensus 20 vd~~ie~L~~ck----------~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdt- 88 (319)
T KOG0371|consen 20 VDPWIEQLYKCK----------PLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDT- 88 (319)
T ss_pred cccchHHHHhcC----------CCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCc-
Confidence 455666666542 578899999999999999999999999999999999999999999999888877765
Q ss_pred CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhh
Q 001901 728 DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLF 807 (998)
Q Consensus 728 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f 807 (998)
+|+|+|||||||++|+|++.+|.++|++||++|.+||||||.+.+..+|||++||.+|||.. .+|+.|.++|
T Consensus 89 -----nylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~a---nvw~~Ftdlf 160 (319)
T KOG0371|consen 89 -----NYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNA---NVWKYFTDLF 160 (319)
T ss_pred -----ceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccc---cchHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999975 7999999999
Q ss_pred cccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHH
Q 001901 808 NWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRV 887 (998)
Q Consensus 808 ~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~ 887 (998)
+++|+.|+|+++|||+|||++|++.+++.++.+.|-.+++.++ .+||||||||.+ .-||..++||+| +.||.+..
T Consensus 161 dy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg-pmcDlLwsdpdd---r~gwg~sprgag-~tfg~di~ 235 (319)
T KOG0371|consen 161 DYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG-PMCDLLWSDPDD---RCGWGISPRGAG-YTFGQDIS 235 (319)
T ss_pred hccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC-ChhheeccCccc---CCCCCCCCCCCC-cccchhhH
Confidence 9999999999999999999999999999999999988888876 788999999985 689999999999 79999999
Q ss_pred HHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCCceEEeEEeccCCCC
Q 001901 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA 957 (998)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 957 (998)
++|-.+||+++|-|+||.+++||.+.+...++|||||+|||+.++|.+|+|.+++.....+..|.|.+-.
T Consensus 236 ~~fn~~n~lslisRahqlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~d~~~~~~f~q~~psp~k 305 (319)
T KOG0371|consen 236 EQFNHKNGLSLISRAHQLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMERDDTKNYDFLQFDPSPRK 305 (319)
T ss_pred HHhhccCCchHhHHHHHHHhcccceeeecceeEEccCCchhhccccHHHHhhhhhccCcceEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999985543
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-53 Score=453.02 Aligned_cols=280 Identities=33% Similarity=0.637 Sum_probs=247.7
Q ss_pred HHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeeec----CCeEEEecCCCCHHHHHHHHHHcCCC
Q 001901 648 PKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLK----APIKIFGDLHGQFGDLMRLFDEYGSP 723 (998)
Q Consensus 648 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~~----~~i~vvGDiHG~~~dL~~il~~~g~~ 723 (998)
++.+|+.+... ..|....+..|+.+|+++|++-|++-+++ ..|.|||||||.++||+-||.+.|+|
T Consensus 121 i~~lieaFk~k----------q~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlP 190 (631)
T KOG0377|consen 121 IDLLIEAFKKK----------QRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLP 190 (631)
T ss_pred HHHHHHHHHHh----------hhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCC
Confidence 56677765432 25678889999999999999999999985 47999999999999999999999999
Q ss_pred CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhh
Q 001901 724 STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRI 803 (998)
Q Consensus 724 ~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~ 803 (998)
+..+ -|||.||+||||.+|+|||++|++|-+.||..+||-|||||+..+|..|||..|+..||... +..+...+
T Consensus 191 S~~n-----pYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~-~k~Ilr~l 264 (631)
T KOG0377|consen 191 SSSN-----PYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRH-GKRILRFL 264 (631)
T ss_pred CCCC-----CeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhc-ccHHHHHH
Confidence 9874 69999999999999999999999999999999999999999999999999999999999765 77888999
Q ss_pred hhhhcccceeEEEcCeEEEecCCccCcccCHHhhhhccC---------Cccc--CC----------CCcceeccccCCCC
Q 001901 804 NRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQR---------PITM--EA----------GSIVLMDLLWSDPT 862 (998)
Q Consensus 804 ~~~f~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~r---------p~~~--~~----------~~~~~~dlLWsDP~ 862 (998)
.++|.|||++.+|+.+||+|||||+.. +.++-|.+|+| |++. +. +.+.+.|+|||||.
T Consensus 265 eevy~WLPi~tiid~~ilvvHGGiSd~-Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~ 343 (631)
T KOG0377|consen 265 EEVYRWLPIGTIIDSRILVVHGGISDS-TDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQ 343 (631)
T ss_pred HHHHHhcchhhhcccceEEEecCcccc-hhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcc
Confidence 999999999999999999999999875 67777777766 2211 00 23457899999998
Q ss_pred CCCCCCCcccC-CCCCCceeeCHHHHHHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEc
Q 001901 863 ENDSVEGLRPN-ARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLG 941 (998)
Q Consensus 863 ~~~~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~ 941 (998)
.+ .|..|| .||.| ++||+|++.+||++++|+++||+|||.++|||+.++++|+|||||+||.....|+||++.+.
T Consensus 344 ~~---~GC~pNt~RGgG-~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAYikl~ 419 (631)
T KOG0377|consen 344 AT---MGCVPNTLRGGG-CYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAYIKLG 419 (631)
T ss_pred cc---cCCCcccccCCc-ceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceEEEeC
Confidence 63 677787 69999 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEe
Q 001901 942 RDLVVVP 948 (998)
Q Consensus 942 ~~~~~~~ 948 (998)
+.+.-.+
T Consensus 420 ~~~~Phf 426 (631)
T KOG0377|consen 420 NQLTPHF 426 (631)
T ss_pred CCCCchH
Confidence 8775433
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=1.3e-46 Score=417.14 Aligned_cols=279 Identities=38% Similarity=0.660 Sum_probs=253.7
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCeeeecC----CeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCC
Q 001901 671 LDCNEIADLCDSAERIFSSEPSVLQLKA----PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH 746 (998)
Q Consensus 671 ~~~~~i~~l~~~~~~~~~~ep~~l~~~~----~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~ 746 (998)
|...-...|+..+..+++++|+++++.. .+.|+||+||||.||+++|+..|.|+... .|+|.||+||||..
T Consensus 183 L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~-----~ylfngdfv~rgs~ 257 (476)
T KOG0376|consen 183 LPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN-----PYLFNGDFVDRGSW 257 (476)
T ss_pred cccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc-----cccccCceeeeccc
Confidence 4555677899999999999999999864 48999999999999999999999998764 79999999999999
Q ss_pred hHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhhcccceeEEEcCeEEEecCC
Q 001901 747 SLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGG 826 (998)
Q Consensus 747 s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~~~il~vHgG 826 (998)
|.|++..+++.|+.+|+++|++|||||...++..|||.+|+..+|.+ ..+..+.++|.+||++-+|+++++.+|||
T Consensus 258 s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte----~~~~~f~~~f~~LPl~~~i~~~~~~~hgg 333 (476)
T KOG0376|consen 258 SVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTE----EMFNLFSEVFIWLPLAHLINNKVLVMHGG 333 (476)
T ss_pred ceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHH----HHHHhhhhhhccccchhhhcCceEEEecC
Confidence 99999999999999999999999999999999999999999999975 47777789999999999999999999999
Q ss_pred ccC-cccCHHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCcEEEEcccc
Q 001901 827 IGR-SINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHEC 905 (998)
Q Consensus 827 i~~-~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~ 905 (998)
+.. .-.++++|++|.|+...+.. ..++|+|||||.. ..|..++.||.| ..||++++++||+.|++++|||+||+
T Consensus 334 lf~~~~v~l~d~r~i~r~~~~~~~-~~~~~~lws~pq~---~~g~s~S~r~~g-~~fG~d~t~~f~~~n~l~~i~rshe~ 408 (476)
T KOG0376|consen 334 LFSPDGVTLEDFRNIDRFEQPPEE-GLMCELLWSDPQP---ANGRSPSKRGVG-LQFGPDVTERFLQDNNLDKIIRSHEV 408 (476)
T ss_pred cCCCCCccHHHHHhhhhccCCccc-ccccccccCCCcc---ccCCCccccCce-eeeCCCchhhHHhhcchHHHhhcccc
Confidence 954 45689999999999555544 4899999999986 478999999999 58999999999999999999999999
Q ss_pred cccceEEecCCeEEEEeccccccCCCCCeEEEEEEc-CCceEEeEEeccCCCCCCCCCC
Q 001901 906 VMDGFERFAQGHLITLFSATNYCGTANNAGAILVLG-RDLVVVPKLIHPLPPAISSPET 963 (998)
Q Consensus 906 ~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 963 (998)
.+.||++.++|+|+|||||||||...+|.||++.++ ++++.++..|.++|..-.-++.
T Consensus 409 ~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~~~~~ma 467 (476)
T KOG0376|consen 409 KDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHPDVKPMA 467 (476)
T ss_pred CCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCCCCCCcc
Confidence 999999999999999999999999999999999998 7888999999888766543333
No 19
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1e-36 Score=346.70 Aligned_cols=306 Identities=24% Similarity=0.269 Sum_probs=233.4
Q ss_pred eeeeecccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEEC
Q 001901 78 VNAVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDV 157 (998)
Q Consensus 78 ~~~~~~~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~ 157 (998)
|..+....+..|.||.+|+++++ +++||||||...... ...+++|+||+
T Consensus 9 W~~~~~~~~~~P~pR~~h~~~~~------------~~~iyv~GG~~~~~~-------------------~~~~~~~~yd~ 57 (341)
T PLN02153 9 WIKVEQKGGKGPGPRCSHGIAVV------------GDKLYSFGGELKPNE-------------------HIDKDLYVFDF 57 (341)
T ss_pred EEEecCCCCCCCCCCCcceEEEE------------CCEEEEECCccCCCC-------------------ceeCcEEEEEC
Confidence 44443445568999999999998 789999999854221 15689999999
Q ss_pred CCCcEEEecCCCCCCCC-ccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeec--CCCCCCCcccEEE
Q 001901 158 LTNKWSRITPFGEPPTP-RAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ--GPGPGPRYGHVMA 234 (998)
Q Consensus 158 ~t~~W~~l~~~g~~P~p-R~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~--g~~P~~R~~hs~~ 234 (998)
.+++|+++++++..|.. +.+|++++++++||||||.... ..++++++||+.++ +|+.++.. ...|.+|..|+++
T Consensus 58 ~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~ 134 (341)
T PLN02153 58 NTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMA 134 (341)
T ss_pred CCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC-CccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEE
Confidence 99999999887644443 4589999999999999998644 34689999999987 59988732 1238899999999
Q ss_pred EECCcEEEEEcCCCCCC------CcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCC-----
Q 001901 235 LVGQRYLMAIGGNDGKR------PLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDAS----- 303 (998)
Q Consensus 235 ~~~~~~Lyv~GG~~g~~------~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~----- 303 (998)
++++ +||||||.+... .++++++||+.++ +|+.+...+..|.+|..|.++ +.+++|||+||.+..
T Consensus 135 ~~~~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG 210 (341)
T PLN02153 135 SDEN-HVYVFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGG 210 (341)
T ss_pred EECC-EEEEECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCC
Confidence 9987 899999986432 4689999999999 999998877666666666555 468999999997521
Q ss_pred --CCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCC-----CccccCCeEEEEECCCCeEE
Q 001901 304 --SVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGG-----RMVEDSSSVAVLDTAAGVWC 376 (998)
Q Consensus 304 --~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~-----~~~~~~~dv~vyD~~t~~W~ 376 (998)
...+++++.|++.++ +|+.....+..|.+|..|++++++++||||||..... ......+++|+||+.+++|+
T Consensus 211 ~~~~~~~~v~~yd~~~~-~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 211 KSDYESNAVQFFDPASG-KWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred ccceecCceEEEEcCCC-cEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 123678999998876 5555444455688999999999999999999974211 01123679999999999999
Q ss_pred EcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEE--CCEEEEEcCCCCC-CCcccEEEecc
Q 001901 377 DTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAV--GDLIFIYGGLRGG-VLLDDLLVAED 438 (998)
Q Consensus 377 ~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~--~~~LyVfGG~~~~-~~l~Dv~~ld~ 438 (998)
.+.....+| +|..|++|+++.+ +++||||||+++. ..++|+|.++.
T Consensus 290 ~~~~~~~~~----------------~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~ 338 (341)
T PLN02153 290 KLGECGEPA----------------MPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAV 338 (341)
T ss_pred eccCCCCCC----------------CCCccccccccccCCcceEEEEcCcCCCCccccceEEEec
Confidence 987543221 2445665555554 3489999998764 78899999864
No 20
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.4e-36 Score=358.77 Aligned_cols=302 Identities=21% Similarity=0.316 Sum_probs=240.7
Q ss_pred eecccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCC
Q 001901 81 VIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTN 160 (998)
Q Consensus 81 ~~~~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~ 160 (998)
.+...+..|.||++|+++.+ +++||||||....... ..+++|+||+.++
T Consensus 155 ~~~~~~~~P~pR~~h~~~~~------------~~~iyv~GG~~~~~~~-------------------~~~~v~~yD~~~~ 203 (470)
T PLN02193 155 KVEQKGEGPGLRCSHGIAQV------------GNKIYSFGGEFTPNQP-------------------IDKHLYVFDLETR 203 (470)
T ss_pred EcccCCCCCCCccccEEEEE------------CCEEEEECCcCCCCCC-------------------eeCcEEEEECCCC
Confidence 33455668999999999998 7899999997543211 5578999999999
Q ss_pred cEEEecCCCCCCC-CccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCc
Q 001901 161 KWSRITPFGEPPT-PRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQR 239 (998)
Q Consensus 161 ~W~~l~~~g~~P~-pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~ 239 (998)
+|+.++.+++.|. +|.+|++++++++||||||.... ..++++|+||+.++ +|+.+.+.+..|.+|+.|+++++++
T Consensus 204 ~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~~~- 279 (470)
T PLN02193 204 TWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAADEE- 279 (470)
T ss_pred EEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEECC-
Confidence 9999988776665 46799999999999999998643 45799999999987 5999986555699999999999987
Q ss_pred EEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCC
Q 001901 240 YLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDG 319 (998)
Q Consensus 240 ~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~ 319 (998)
+||||||.++...++++++||+.++ +|+.+......|.+|..|.++ +.+++||++||.++. .+++++.|++.++
T Consensus 280 ~iYv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~~-~~~gkiyviGG~~g~--~~~dv~~yD~~t~- 353 (470)
T PLN02193 280 NVYVFGGVSATARLKTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGLE-VVQGKVWVVYGFNGC--EVDDVHYYDPVQD- 353 (470)
T ss_pred EEEEECCCCCCCCcceEEEEECCCC--EEEeCCCCCCCCCCCCCcEEE-EECCcEEEEECCCCC--ccCceEEEECCCC-
Confidence 8999999988888999999999999 999998766666667666555 458999999998654 3789999999876
Q ss_pred eEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCC-----ccccCCeEEEEECCCCeEEEcccCcCCCCCCCCcccc
Q 001901 320 RWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGR-----MVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADA 394 (998)
Q Consensus 320 ~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~-----~~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~~~~~~ 394 (998)
+|+.....+..|.+|..|+++.++++|||+||...... .....+++|+||+.+++|+.+..+...
T Consensus 354 ~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~---------- 423 (470)
T PLN02193 354 KWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEE---------- 423 (470)
T ss_pred EEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCC----------
Confidence 66655544556889999999999999999999864211 012357899999999999999876321
Q ss_pred CCCCCccCCCCcceeEEE--EE-C-CEEEEEcCCCC-CCCcccEEEecc
Q 001901 395 AGGDAAVELTRRCRHAAA--AV-G-DLIFIYGGLRG-GVLLDDLLVAED 438 (998)
Q Consensus 395 ~~~~~~~~p~~R~~hsa~--~~-~-~~LyVfGG~~~-~~~l~Dv~~ld~ 438 (998)
...|.+|..|+++ .+ + +.|+||||+++ +.+++|+|.|+.
T Consensus 424 -----~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~ 467 (470)
T PLN02193 424 -----EETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGI 467 (470)
T ss_pred -----CCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEec
Confidence 1236688777543 23 3 46999999875 588999999975
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=316.74 Aligned_cols=301 Identities=24% Similarity=0.384 Sum_probs=248.7
Q ss_pred CCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEecCC-
Q 001901 90 GPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPF- 168 (998)
Q Consensus 90 ~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~- 168 (998)
+.|.+|+++++ |.+||-|||+-..+..... ---|+++++..+.+|+++++.
T Consensus 12 PrRVNHAavaV------------G~riYSFGGYCsGedy~~~----------------~piDVH~lNa~~~RWtk~pp~~ 63 (392)
T KOG4693|consen 12 PRRVNHAAVAV------------GSRIYSFGGYCSGEDYDAK----------------DPIDVHVLNAENYRWTKMPPGI 63 (392)
T ss_pred cccccceeeee------------cceEEecCCcccccccccC----------------CcceeEEeeccceeEEecCccc
Confidence 46999999999 7999999998765532110 334999999999999999872
Q ss_pred ---------CCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCc
Q 001901 169 ---------GEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQR 239 (998)
Q Consensus 169 ---------g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~ 239 (998)
.-.|--|++|+.+.+.+++||+||.++....-|-+|.||++++ +|.++.+.|-.|..|.+|++|++++
T Consensus 64 ~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~--~W~~p~v~G~vPgaRDGHsAcV~gn- 140 (392)
T KOG4693|consen 64 TKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETN--VWKKPEVEGFVPGARDGHSACVWGN- 140 (392)
T ss_pred ccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccc--cccccceeeecCCccCCceeeEECc-
Confidence 1247779999999999999999999886666689999999997 5999999999999999999999998
Q ss_pred EEEEEcCCCC--CCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCC-------CcccE
Q 001901 240 YLMAIGGNDG--KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSV-------PLASA 310 (998)
Q Consensus 240 ~Lyv~GG~~g--~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~-------~~~dv 310 (998)
.+|||||+.. +.+.+|++.||+.+. +|+.+...+.+|.-|-+|+++++ ++++|||||+..... .+.+.
T Consensus 141 ~MyiFGGye~~a~~FS~d~h~ld~~Tm--tWr~~~Tkg~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~~ 217 (392)
T KOG4693|consen 141 QMYIFGGYEEDAQRFSQDTHVLDFATM--TWREMHTKGDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCDT 217 (392)
T ss_pred EEEEecChHHHHHhhhccceeEeccce--eeeehhccCCCchhhhhhhhhhc-cceEEEeccccccCCCccchhhhhcce
Confidence 8999999944 667899999999998 99999999998877777877766 799999999854331 22333
Q ss_pred EEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcccCcCCCCCCCC
Q 001901 311 YGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRY 390 (998)
Q Consensus 311 ~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~~ 390 (998)
..+.+..++.|......++.|..|..|++.+++++||+|||+++.-. ...+++|.||+.|..|..+...+.
T Consensus 218 i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln--~HfndLy~FdP~t~~W~~I~~~Gk------- 288 (392)
T KOG4693|consen 218 IMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN--VHFNDLYCFDPKTSMWSVISVRGK------- 288 (392)
T ss_pred eEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhh--hhhcceeecccccchheeeeccCC-------
Confidence 44444556678777677888999999999999999999999987654 458999999999999999887633
Q ss_pred ccccCCCCCccCCCCcceeEEEEECCEEEEEcCCCC-------------------CCCcccEEEecccccccc
Q 001901 391 SADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRG-------------------GVLLDDLLVAEDLAAAET 444 (998)
Q Consensus 391 ~~~~~~~~~~~~p~~R~~hsa~~~~~~LyVfGG~~~-------------------~~~l~Dv~~ld~~~~~~~ 444 (998)
.|.+|.++++++.+++||+|||... -..++|+.+||..+..++
T Consensus 289 -----------~P~aRRRqC~~v~g~kv~LFGGTsP~~~~~~Spt~~~G~~~~~~LiD~SDLHvLDF~PsLKT 350 (392)
T KOG4693|consen 289 -----------YPSARRRQCSVVSGGKVYLFGGTSPLPCHPLSPTNYNGMISPSGLIDLSDLHVLDFAPSLKT 350 (392)
T ss_pred -----------CCCcccceeEEEECCEEEEecCCCCCCCCCCCccccCCCCCcccccccccceeeecChhHHH
Confidence 3679999999999999999999542 035688888887664443
No 22
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.1e-32 Score=325.78 Aligned_cols=278 Identities=26% Similarity=0.379 Sum_probs=226.4
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCc--EEEEECCC----CcEEEecCCCCCCCCccceEEEEeCCE
Q 001901 113 GPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATAD--VHCYDVLT----NKWSRITPFGEPPTPRAAHVATAVGTM 186 (998)
Q Consensus 113 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--v~~yD~~t----~~W~~l~~~g~~P~pR~~hsa~~~~~~ 186 (998)
+++|+.|+|.... .++. +|.+++.+ ++|.++.+.++.|.||.+|++++++++
T Consensus 120 ~~~ivgf~G~~~~----------------------~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~ 177 (470)
T PLN02193 120 GGKIVGFHGRSTD----------------------VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNK 177 (470)
T ss_pred CCeEEEEeccCCC----------------------cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCE
Confidence 7899999997643 2333 34557655 799999988888999999999999999
Q ss_pred EEEEeCCCC-CCCCcccEEEEEcCCCCCceEEeeecCCCCCC-CcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 187 VVIQGGIGP-AGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP-RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 187 lyVfGG~~~-~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~-R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
||||||... .....+++|+||+.++ +|+.++..+.+|.. |.+|+++++++ +||||||.++...++++|+||+.++
T Consensus 178 iyv~GG~~~~~~~~~~~v~~yD~~~~--~W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 178 IYSFGGEFTPNQPIDKHLYVFDLETR--TWSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred EEEECCcCCCCCCeeCcEEEEECCCC--EEEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCCCCCccEEEEECCCC
Confidence 999999753 3334578999999987 59998877767764 67899999988 8999999988778999999999999
Q ss_pred CceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECC
Q 001901 265 PYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNA 344 (998)
Q Consensus 265 ~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~ 344 (998)
+|+++.++...|.+|..|++++ .+++||||||.+... .+++++.|++.++ +|+....++.+|.+|.+|+++++++
T Consensus 255 --~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~-~~~~~~~yd~~t~-~W~~~~~~~~~~~~R~~~~~~~~~g 329 (470)
T PLN02193 255 --EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATA-RLKTLDSYNIVDK-KWFHCSTPGDSFSIRGGAGLEVVQG 329 (470)
T ss_pred --EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCC-CcceEEEEECCCC-EEEeCCCCCCCCCCCCCcEEEEECC
Confidence 9999988876677888776654 589999999987655 5789999998876 5554444444578899999999999
Q ss_pred EEEEEcccCCCCCccccCCeEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEECCEEEEEcCC
Q 001901 345 RLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGL 424 (998)
Q Consensus 345 ~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyVfGG~ 424 (998)
+|||+||.++. ..+++++||+.+++|+++..++. .|.+|..|++++++++||||||.
T Consensus 330 kiyviGG~~g~-----~~~dv~~yD~~t~~W~~~~~~g~------------------~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 330 KVWVVYGFNGC-----EVDDVHYYDPVQDKWTQVETFGV------------------RPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred cEEEEECCCCC-----ccCceEEEECCCCEEEEeccCCC------------------CCCCcceeEEEEECCEEEEECCc
Confidence 99999998643 26889999999999999886632 25689999999999999999997
Q ss_pred CC---------CCCcccEEEeccccccc
Q 001901 425 RG---------GVLLDDLLVAEDLAAAE 443 (998)
Q Consensus 425 ~~---------~~~l~Dv~~ld~~~~~~ 443 (998)
.. ..+++|+|.||......
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred cCCccccccCccceeccEEEEEcCcCEE
Confidence 53 24678999999865443
No 23
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.9e-34 Score=312.64 Aligned_cols=310 Identities=27% Similarity=0.415 Sum_probs=260.1
Q ss_pred eeeeeecccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEE
Q 001901 77 VVNAVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYD 156 (998)
Q Consensus 77 ~~~~~~~~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD 156 (998)
-|..+....|..|.||.||-++++ ..-|++|||-+.. ..++++.|+
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVai------------kELiviFGGGNEG----------------------iiDELHvYN 63 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAI------------KELIVIFGGGNEG----------------------IIDELHVYN 63 (830)
T ss_pred ceEEEecccCCCCCccccchheee------------eeeEEEecCCccc----------------------chhhhhhhc
Confidence 355566778999999999999999 6789999996542 889999999
Q ss_pred CCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeee----cCCCCCCCcccE
Q 001901 157 VLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVV----QGPGPGPRYGHV 232 (998)
Q Consensus 157 ~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~----~g~~P~~R~~hs 232 (998)
..+++|......|+.|.+.+.|+.++.+++||+|||+.+-+.+.||+|.+.... |+|.++.+ .|.+|-||.+|+
T Consensus 64 TatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasR--WeWkrlkp~~p~nG~pPCPRlGHS 141 (830)
T KOG4152|consen 64 TATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASR--WEWKRLKPKTPKNGPPPCPRLGHS 141 (830)
T ss_pred cccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCce
Confidence 999999999999999999999999999999999999999999999998776544 68988764 578999999999
Q ss_pred EEEECCcEEEEEcCCCC---------CCCcccEEEEECCCCC--ceEEEcccCCCCCCCccceEEEEEe-----CCEEEE
Q 001901 233 MALVGQRYLMAIGGNDG---------KRPLADVWALDTAAKP--YEWRKLEPEGEGPPPCMYATASARS-----DGLLLL 296 (998)
Q Consensus 233 ~~~~~~~~Lyv~GG~~g---------~~~lndv~~yD~~s~~--~~W~~v~~~~~~P~~r~~~~a~~~~-----~~~lyv 296 (998)
..++++ +.|+|||... -.|+||+|.+++.-.. .-|......+..|++|..|+++++. ..+|||
T Consensus 142 Fsl~gn-KcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvv 220 (830)
T KOG4152|consen 142 FSLVGN-KCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVV 220 (830)
T ss_pred eEEecc-EeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEE
Confidence 999998 8999999732 3469999999997443 5799999999999999999999873 238999
Q ss_pred EeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCC----------CCCccccCCeEE
Q 001901 297 CGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALG----------GGRMVEDSSSVA 366 (998)
Q Consensus 297 fGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~----------~~~~~~~~~dv~ 366 (998)
|||+.+.. +.|+|.+|..+- +|...+..+..|.||..|+++.++++||||||+-. ...-....+++-
T Consensus 221 yGGM~G~R--LgDLW~Ldl~Tl-~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~ 297 (830)
T KOG4152|consen 221 YGGMSGCR--LGDLWTLDLDTL-TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLA 297 (830)
T ss_pred Eccccccc--ccceeEEeccee-ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeecccee
Confidence 99998765 899999987754 88888888999999999999999999999999721 011113367788
Q ss_pred EEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEECCEEEEEcCCCC-------CCCcccEEEeccc
Q 001901 367 VLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRG-------GVLLDDLLVAEDL 439 (998)
Q Consensus 367 vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyVfGG~~~-------~~~l~Dv~~ld~~ 439 (998)
++|+.+..|..+-.... .....|.+|.+|+++.++.+|||.-|.+| .....|+|.||+.
T Consensus 298 clNldt~~W~tl~~d~~--------------ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 298 CLNLDTMAWETLLMDTL--------------EDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred eeeecchheeeeeeccc--------------cccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhccc
Confidence 99999999998754311 11125889999999999999999999765 4678999999975
Q ss_pred c
Q 001901 440 A 440 (998)
Q Consensus 440 ~ 440 (998)
.
T Consensus 364 k 364 (830)
T KOG4152|consen 364 K 364 (830)
T ss_pred C
Confidence 4
No 24
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.2e-33 Score=333.36 Aligned_cols=266 Identities=23% Similarity=0.393 Sum_probs=241.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeC
Q 001901 113 GPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGG 192 (998)
Q Consensus 113 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG 192 (998)
.+.||++||...... ..+.+..||+.++.|..++.+ |.+|..+++++++++||+.||
T Consensus 284 ~~~l~~vGG~~~~~~--------------------~~~~ve~yd~~~~~w~~~a~m---~~~r~~~~~~~~~~~lYv~GG 340 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQ--------------------SLRSVECYDPKTNEWSSLAPM---PSPRCRVGVAVLNGKLYVVGG 340 (571)
T ss_pred CCeEEEECCCCCCCc--------------------ccceeEEecCCcCcEeecCCC---CcccccccEEEECCEEEEEcc
Confidence 578999999986221 778999999999999999998 899999999999999999999
Q ss_pred CCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcc
Q 001901 193 IGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (998)
Q Consensus 193 ~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~ 272 (998)
.+.+...++.+|+||+.+++ |+.++ +|+.+|.+|+++++++ .||++||.+|...++.+++||+.++ +|+.++
T Consensus 341 ~~~~~~~l~~ve~YD~~~~~--W~~~a---~M~~~R~~~~v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~--~W~~va 412 (571)
T KOG4441|consen 341 YDSGSDRLSSVERYDPRTNQ--WTPVA---PMNTKRSDFGVAVLDG-KLYAVGGFDGEKSLNSVECYDPVTN--KWTPVA 412 (571)
T ss_pred ccCCCcccceEEEecCCCCc--eeccC---CccCccccceeEEECC-EEEEEeccccccccccEEEecCCCC--cccccC
Confidence 97555678999999999985 99988 9999999999999998 8999999999999999999999999 999999
Q ss_pred cCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEccc
Q 001901 273 PEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGA 352 (998)
Q Consensus 273 ~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~ 352 (998)
++.. ++..+++++.+++||++||.++...+++.+..||+.++ +|...+++ +.+|.++++++++++||++||.
T Consensus 413 ~m~~----~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M-~~~R~~~g~a~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 413 PMLT----RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPM-NTRRSGFGVAVLNGKIYVVGGF 484 (571)
T ss_pred CCCc----ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC---ceeecCCc-ccccccceEEEECCEEEEECCc
Confidence 8865 57788888889999999999888878999999999999 88899888 6999999999999999999999
Q ss_pred CCCCCccccCCeEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEECCEEEEEcCCCCCCCccc
Q 001901 353 LGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDD 432 (998)
Q Consensus 353 ~~~~~~~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyVfGG~~~~~~l~D 432 (998)
++.. ....++.||+.+++|+.+..+ ..+|..+++++++++||+.||+++..+++.
T Consensus 485 ~~~~----~~~~VE~ydp~~~~W~~v~~m---------------------~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ 539 (571)
T KOG4441|consen 485 DGTS----ALSSVERYDPETNQWTMVAPM---------------------TSPRSAVGVVVLGGKLYAVGGFDGNNNLNT 539 (571)
T ss_pred cCCC----ccceEEEEcCCCCceeEcccC---------------------ccccccccEEEECCEEEEEecccCccccce
Confidence 8832 256799999999999999877 569999999999999999999999999999
Q ss_pred EEEecccccc
Q 001901 433 LLVAEDLAAA 442 (998)
Q Consensus 433 v~~ld~~~~~ 442 (998)
+..+|...-.
T Consensus 540 ve~ydp~~d~ 549 (571)
T KOG4441|consen 540 VECYDPETDT 549 (571)
T ss_pred eEEcCCCCCc
Confidence 9999765533
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=5.5e-31 Score=300.45 Aligned_cols=277 Identities=22% Similarity=0.286 Sum_probs=212.2
Q ss_pred CCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEEC--CCCcEEE
Q 001901 87 DGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDV--LTNKWSR 164 (998)
Q Consensus 87 ~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~--~t~~W~~ 164 (998)
..|.||..++++++ +++|||+||.. .+++|+||+ .+++|..
T Consensus 3 ~lp~~~~~~~~~~~------------~~~vyv~GG~~-------------------------~~~~~~~d~~~~~~~W~~ 45 (346)
T TIGR03547 3 DLPVGFKNGTGAII------------GDKVYVGLGSA-------------------------GTSWYKLDLKKPSKGWQK 45 (346)
T ss_pred CCCccccCceEEEE------------CCEEEEEcccc-------------------------CCeeEEEECCCCCCCceE
Confidence 46889999888888 78999999962 246899996 5788999
Q ss_pred ecCCCCCC-CCccceEEEEeCCEEEEEeCCCCCC-----CCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEE-EEC
Q 001901 165 ITPFGEPP-TPRAAHVATAVGTMVVIQGGIGPAG-----LSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMA-LVG 237 (998)
Q Consensus 165 l~~~g~~P-~pR~~hsa~~~~~~lyVfGG~~~~~-----~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~-~~~ 237 (998)
++.+ | .+|..|++++++++|||+||..... ..++++|+||+.++ +|+.+. ..+|.+|.+|+++ +++
T Consensus 46 l~~~---p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~--~W~~~~--~~~p~~~~~~~~~~~~~ 118 (346)
T TIGR03547 46 IADF---PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN--SWQKLD--TRSPVGLLGASGFSLHN 118 (346)
T ss_pred CCCC---CCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC--EEecCC--CCCCCcccceeEEEEeC
Confidence 9887 6 5899999999999999999985322 24689999999997 499986 2467788888877 566
Q ss_pred CcEEEEEcCCCCCC----------------------------------CcccEEEEECCCCCceEEEcccCCCCCCCccc
Q 001901 238 QRYLMAIGGNDGKR----------------------------------PLADVWALDTAAKPYEWRKLEPEGEGPPPCMY 283 (998)
Q Consensus 238 ~~~Lyv~GG~~g~~----------------------------------~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~ 283 (998)
+ +||++||.++.. .++++++||+.++ +|+.+.+++ ..++.
T Consensus 119 g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~~~~~~p---~~~r~ 192 (346)
T TIGR03547 119 G-QAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWRNLGENP---FLGTA 192 (346)
T ss_pred C-EEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--ceeECccCC---CCcCC
Confidence 6 899999986421 2478999999999 999997663 22455
Q ss_pred eEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCc-------ceeEEEEECCEEEEEcccCCCC
Q 001901 284 ATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPR-------YQHAAVFVNARLHVSGGALGGG 356 (998)
Q Consensus 284 ~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR-------~~hsav~~~~~L~V~GG~~~~~ 356 (998)
+++++..+++|||+||.........+++.|+...+ +.+|...+.+ |.+| .+|++++++++|||+||.+...
T Consensus 193 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~-~~~W~~~~~m-~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~ 270 (346)
T TIGR03547 193 GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGG-KLEWNKLPPL-PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPG 270 (346)
T ss_pred CceEEEECCEEEEEeeeeCCCccchheEEEEecCC-CceeeecCCC-CCCCCCccccccEEeeeEECCEEEEeecCCCCC
Confidence 66677779999999998655434456666654211 2266667665 3443 4677888999999999986321
Q ss_pred Cc-------------cccCCeEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEECCEEEEEcC
Q 001901 357 RM-------------VEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGG 423 (998)
Q Consensus 357 ~~-------------~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyVfGG 423 (998)
.. ......+++||+++++|+.+..+ |.+|..+++++++++|||+||
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---------------------p~~~~~~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 271 AQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL---------------------PQGLAYGVSVSWNNGVLLIGG 329 (346)
T ss_pred chhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC---------------------CCCceeeEEEEcCCEEEEEec
Confidence 10 00124689999999999999877 668889999999999999999
Q ss_pred CCC-CCCcccEEEe
Q 001901 424 LRG-GVLLDDLLVA 436 (998)
Q Consensus 424 ~~~-~~~l~Dv~~l 436 (998)
.+. +..++|++.+
T Consensus 330 ~~~~~~~~~~v~~~ 343 (346)
T TIGR03547 330 ENSGGKAVTDVYLL 343 (346)
T ss_pred cCCCCCEeeeEEEE
Confidence 875 4778998765
No 26
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.98 E-value=6.3e-31 Score=310.03 Aligned_cols=297 Identities=31% Similarity=0.515 Sum_probs=248.9
Q ss_pred cccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCC-cEEEEECCCCc
Q 001901 83 EKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATA-DVHCYDVLTNK 161 (998)
Q Consensus 83 ~~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dv~~yD~~t~~ 161 (998)
...+..|.+|++|+++.+ ++++|||||....... .+ |+|+||..+..
T Consensus 52 ~~~~~~p~~R~~hs~~~~------------~~~~~vfGG~~~~~~~--------------------~~~dl~~~d~~~~~ 99 (482)
T KOG0379|consen 52 DVLGVGPIPRAGHSAVLI------------GNKLYVFGGYGSGDRL--------------------TDLDLYVLDLESQL 99 (482)
T ss_pred ccCCCCcchhhccceeEE------------CCEEEEECCCCCCCcc--------------------ccceeEEeecCCcc
Confidence 356789999999999999 7899999998776531 22 79999999999
Q ss_pred EEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEE
Q 001901 162 WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYL 241 (998)
Q Consensus 162 W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~L 241 (998)
|......|..|.+|++|++++++++||+|||........++++.||+.+.+ |..+.+.+.+|.+|.+|+++++++ +|
T Consensus 100 w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~-~l 176 (482)
T KOG0379|consen 100 WTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRT--WSLLSPTGDPPPPRAGHSATVVGT-KL 176 (482)
T ss_pred cccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCc--EEEecCcCCCCCCcccceEEEECC-EE
Confidence 999999999999999999999999999999997656668999999999985 999999999999999999999997 89
Q ss_pred EEEcCCCCCC-CcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCe
Q 001901 242 MAIGGNDGKR-PLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGR 320 (998)
Q Consensus 242 yv~GG~~g~~-~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~ 320 (998)
|||||.+... .+||+|+||+.+. +|.++...+..|.||..|+++++ ++++++|||.+.....++|+|.|+..+
T Consensus 177 ~vfGG~~~~~~~~ndl~i~d~~~~--~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl~~--- 250 (482)
T KOG0379|consen 177 VVFGGIGGTGDSLNDLHIYDLETS--TWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDLST--- 250 (482)
T ss_pred EEECCccCcccceeeeeeeccccc--cceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEeeeccc---
Confidence 9999998866 8999999999999 99999999999999988887777 778888888775555899999999986
Q ss_pred EEEEECC--CCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcccCcCCCCCCCCccccCCCC
Q 001901 321 WEWAIAP--GVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGD 398 (998)
Q Consensus 321 W~w~~~~--g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~ 398 (998)
|.|.... +..|.+|+.|+.+..+.+++|+||...... ..+.++|.||.++..|..+.....
T Consensus 251 ~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~--~~l~~~~~l~~~~~~w~~~~~~~~--------------- 313 (482)
T KOG0379|consen 251 WEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQ--EPLGDLYGLDLETLVWSKVESVGV--------------- 313 (482)
T ss_pred ceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccc--ccccccccccccccceeeeecccc---------------
Confidence 5666444 778999999999999999999999876421 237899999999999999988741
Q ss_pred CccCCCCcceeEEEEECCE----EEEEcCCC-CCCCcccEEEeccc
Q 001901 399 AAVELTRRCRHAAAAVGDL----IFIYGGLR-GGVLLDDLLVAEDL 439 (998)
Q Consensus 399 ~~~~p~~R~~hsa~~~~~~----LyVfGG~~-~~~~l~Dv~~ld~~ 439 (998)
..+.+|..|+++..... ..++||.. .....++++.+...
T Consensus 314 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (482)
T KOG0379|consen 314 --VRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIK 357 (482)
T ss_pred --ccccccccccceeeccCCccceeeecCccccccchhhccccccc
Confidence 22568999998888553 44455522 23456666655443
No 27
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=1.7e-30 Score=293.62 Aligned_cols=283 Identities=16% Similarity=0.199 Sum_probs=208.8
Q ss_pred CCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCC--CcEEEecC
Q 001901 90 GPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT--NKWSRITP 167 (998)
Q Consensus 90 ~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t--~~W~~l~~ 167 (998)
..+.||.+.++ ++.|||+||.+..... ....|.+ ..++++|+|+... .+|..+..
T Consensus 2 ~~~~g~~~~~~------------~~~l~v~GG~~~~~~~---------~~~~g~~--~~~~~v~~~~~~~~~~~W~~~~~ 58 (323)
T TIGR03548 2 LGVAGCYAGII------------GDYILVAGGCNFPEDP---------LAEGGKK--KNYKGIYIAKDENSNLKWVKDGQ 58 (323)
T ss_pred CceeeEeeeEE------------CCEEEEeeccCCCCCc---------hhhCCcE--EeeeeeEEEecCCCceeEEEccc
Confidence 45778888888 7999999999764310 0001111 2778999996333 37999887
Q ss_pred CCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceE-EeeecCCCCCCCcccEEEEECCcEEEEEcC
Q 001901 168 FGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWH-RVVVQGPGPGPRYGHVMALVGQRYLMAIGG 246 (998)
Q Consensus 168 ~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~-~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG 246 (998)
+ |.+|..|++++++++||++||.... ..++++++||+.++. |. .+...+++|.+|..|+++++++ +|||+||
T Consensus 59 l---p~~r~~~~~~~~~~~lyviGG~~~~-~~~~~v~~~d~~~~~--w~~~~~~~~~lp~~~~~~~~~~~~~-~iYv~GG 131 (323)
T TIGR03548 59 L---PYEAAYGASVSVENGIYYIGGSNSS-ERFSSVYRITLDESK--EELICETIGNLPFTFENGSACYKDG-TLYVGGG 131 (323)
T ss_pred C---CccccceEEEEECCEEEEEcCCCCC-CCceeEEEEEEcCCc--eeeeeeEcCCCCcCccCceEEEECC-EEEEEeC
Confidence 6 8899989999999999999998643 356899999998875 52 2233348999999999999987 8999999
Q ss_pred CCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEEC
Q 001901 247 NDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIA 326 (998)
Q Consensus 247 ~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~ 326 (998)
......++++|+||+.++ +|+++++++. .++.+++++..+++||||||.++.. ..+++.|++.++ +|..+
T Consensus 132 ~~~~~~~~~v~~yd~~~~--~W~~~~~~p~---~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~---~W~~~ 201 (323)
T TIGR03548 132 NRNGKPSNKSYLFNLETQ--EWFELPDFPG---EPRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKN---QWQKV 201 (323)
T ss_pred cCCCccCceEEEEcCCCC--CeeECCCCCC---CCCCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCC---eeEEC
Confidence 876667899999999999 9999976532 1344555667799999999986543 467899999877 55555
Q ss_pred CCC----CCCCcceeEE-EEECCEEEEEcccCCCCC----------------------------ccccCCeEEEEECCCC
Q 001901 327 PGV----SPSPRYQHAA-VFVNARLHVSGGALGGGR----------------------------MVEDSSSVAVLDTAAG 373 (998)
Q Consensus 327 ~g~----~P~pR~~hsa-v~~~~~L~V~GG~~~~~~----------------------------~~~~~~dv~vyD~~t~ 373 (998)
+.+ .|..+..+++ ++.+++|||+||.+.... .....+++++||+.++
T Consensus 202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 281 (323)
T TIGR03548 202 ADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG 281 (323)
T ss_pred CCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC
Confidence 543 2334444544 445789999999864210 0011367999999999
Q ss_pred eEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEECCEEEEEcCCCC-CCCccc
Q 001901 374 VWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRG-GVLLDD 432 (998)
Q Consensus 374 ~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyVfGG~~~-~~~l~D 432 (998)
+|+.++.++ ..+|..++++.++++||++||... +.+..+
T Consensus 282 ~W~~~~~~p--------------------~~~r~~~~~~~~~~~iyv~GG~~~pg~rt~~ 321 (323)
T TIGR03548 282 KWKSIGNSP--------------------FFARCGAALLLTGNNIFSINGELKPGVRTPD 321 (323)
T ss_pred eeeEccccc--------------------ccccCchheEEECCEEEEEeccccCCcCCcC
Confidence 999998651 148999999999999999999643 344443
No 28
>PLN02153 epithiospecifier protein
Probab=99.98 E-value=2.7e-30 Score=294.02 Aligned_cols=260 Identities=25% Similarity=0.398 Sum_probs=201.5
Q ss_pred CCCcEEEecCC-CCCCCCccceEEEEeCCEEEEEeCCCCC-CCCcccEEEEEcCCCCCceEEeeecCCCCCC-CcccEEE
Q 001901 158 LTNKWSRITPF-GEPPTPRAAHVATAVGTMVVIQGGIGPA-GLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP-RYGHVMA 234 (998)
Q Consensus 158 ~t~~W~~l~~~-g~~P~pR~~hsa~~~~~~lyVfGG~~~~-~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~-R~~hs~~ 234 (998)
....|.++... +..|.||.+|++++++++|||+||.... ....+++|+||+.++ +|+.+++.+..|.. +.+|+++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTH--TWSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCC--EEEEcCccCCCCCCccCceEEE
Confidence 45679999874 3469999999999999999999998532 334689999999997 59998865555543 4588999
Q ss_pred EECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCC--CCCCCccceEEEEEeCCEEEEEeccCCCC-----CCc
Q 001901 235 LVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEG--EGPPPCMYATASARSDGLLLLCGGRDASS-----VPL 307 (998)
Q Consensus 235 ~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~--~~P~~r~~~~a~~~~~~~lyvfGG~~~~~-----~~~ 307 (998)
++++ +||+|||.++...++++++||+.++ +|+.+..+. ..|.+|..|++ ++.+++||||||.+... ..+
T Consensus 83 ~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 83 AVGT-KLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSM-ASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EECC-EEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEE-EEECCEEEEECCccCCCccCCCccc
Confidence 9998 8999999988778899999999999 999987653 23556666655 55699999999986432 235
Q ss_pred ccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCC----CCccccCCeEEEEECCCCeEEEcccCcC
Q 001901 308 ASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGG----GRMVEDSSSVAVLDTAAGVWCDTKSVVT 383 (998)
Q Consensus 308 ~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~----~~~~~~~~dv~vyD~~t~~W~~v~~~~~ 383 (998)
++++.|++.++ +|+.....+.+|.+|.+|++++++++|||+||.... +......+++++||+.+++|+++...+.
T Consensus 159 ~~v~~yd~~~~-~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~ 237 (341)
T PLN02153 159 RTIEAYNIADG-KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA 237 (341)
T ss_pred ceEEEEECCCC-eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC
Confidence 78999998877 444333333346789999999999999999997531 1111226789999999999999876522
Q ss_pred CCCCCCCccccCCCCCccCCCCcceeEEEEECCEEEEEcCCC---------CCCCcccEEEecccccc
Q 001901 384 SPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR---------GGVLLDDLLVAEDLAAA 442 (998)
Q Consensus 384 ~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyVfGG~~---------~~~~l~Dv~~ld~~~~~ 442 (998)
.|.+|..|++++++++||||||.. .+.+++|+|.||.....
T Consensus 238 ------------------~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 238 ------------------KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ------------------CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 256899999999999999999963 23567899999976543
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.98 E-value=1.6e-31 Score=272.92 Aligned_cols=228 Identities=24% Similarity=0.374 Sum_probs=205.1
Q ss_pred CCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEec
Q 001901 87 DGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRIT 166 (998)
Q Consensus 87 ~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~ 166 (998)
..|..|+|||.+.+ .+++||+||.+..++ ..|-+|+||+.++.|.+..
T Consensus 74 ~VPyqRYGHtvV~y------------~d~~yvWGGRND~eg--------------------aCN~Ly~fDp~t~~W~~p~ 121 (392)
T KOG4693|consen 74 AVPYQRYGHTVVEY------------QDKAYVWGGRNDDEG--------------------ACNLLYEFDPETNVWKKPE 121 (392)
T ss_pred ccchhhcCceEEEE------------cceEEEEcCccCccc--------------------ccceeeeeccccccccccc
Confidence 46889999999999 799999999998775 8899999999999999999
Q ss_pred CCCCCCCCccceEEEEeCCEEEEEeCCCCC-CCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEc
Q 001901 167 PFGEPPTPRAAHVATAVGTMVVIQGGIGPA-GLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIG 245 (998)
Q Consensus 167 ~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~-~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~G 245 (998)
..|-.|.+|.+|++|++++.+|||||+.+. ...++|++.+|+.+.+ |+.+.+.|..|.=|..|+++++++ .+||||
T Consensus 122 v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~Tmt--Wr~~~Tkg~PprwRDFH~a~~~~~-~MYiFG 198 (392)
T KOG4693|consen 122 VEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMT--WREMHTKGDPPRWRDFHTASVIDG-MMYIFG 198 (392)
T ss_pred eeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEecccee--eeehhccCCCchhhhhhhhhhccc-eEEEec
Confidence 999999999999999999999999998643 4567999999999985 999999999999999999999997 899999
Q ss_pred CCCC---------CCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCC-CCcccEEEEec
Q 001901 246 GNDG---------KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS-VPLASAYGLAK 315 (998)
Q Consensus 246 G~~g---------~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~-~~~~dv~~~~~ 315 (998)
|... ..+.+.+-.||+.+. .|......+..|..|+.|++.++ +++||+|||+++.- ..++|+|.|++
T Consensus 199 GR~D~~gpfHs~~e~Yc~~i~~ld~~T~--aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~HfndLy~FdP 275 (392)
T KOG4693|consen 199 GRSDESGPFHSIHEQYCDTIMALDLATG--AWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFNDLYCFDP 275 (392)
T ss_pred cccccCCCccchhhhhcceeEEEecccc--ccccCCCCCcCCCcccccceEEE-cceEEEecccchhhhhhhcceeeccc
Confidence 9843 234677889999999 99999888888999999987776 99999999997643 46899999999
Q ss_pred CCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccC
Q 001901 316 HRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGAL 353 (998)
Q Consensus 316 ~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~ 353 (998)
.+. .|....+.+.-|.+|..+++++.++++|+|||..
T Consensus 276 ~t~-~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 276 KTS-MWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred ccc-hheeeeccCCCCCcccceeEEEECCEEEEecCCC
Confidence 876 8998999998899999999999999999999964
No 30
>PHA02713 hypothetical protein; Provisional
Probab=99.98 E-value=1.4e-30 Score=312.83 Aligned_cols=247 Identities=13% Similarity=0.137 Sum_probs=207.9
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCc
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~ 229 (998)
..+++||+.+++|..++++ |.+|..|++++++++|||+||........+++++||+.++. |..++ +||.+|.
T Consensus 272 ~~v~~yd~~~~~W~~l~~m---p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~---~m~~~R~ 343 (557)
T PHA02713 272 PCILVYNINTMEYSVISTI---PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELP---PMIKNRC 343 (557)
T ss_pred CCEEEEeCCCCeEEECCCC---CccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCC---CCcchhh
Confidence 4789999999999999887 88999999999999999999975444557899999999974 99887 8999999
Q ss_pred ccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCC-----
Q 001901 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS----- 304 (998)
Q Consensus 230 ~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~----- 304 (998)
.|+++++++ +||++||.++...++++++||+.++ +|+.+++++. +|..+ ++++.+++||++||.++..
T Consensus 344 ~~~~~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~---~r~~~-~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 344 RFSLAVIDD-TIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPI---ALSSY-GMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred ceeEEEECC-EEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCc---ccccc-cEEEECCEEEEEeCCCcccccccc
Confidence 999999998 8999999988777899999999999 9999987644 35444 4556699999999986431
Q ss_pred ------------CCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCC
Q 001901 305 ------------VPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAA 372 (998)
Q Consensus 305 ------------~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t 372 (998)
..++.++.|++.++ +|..++++ +.+|..+++++++++|||+||.++... ..+.+++||+++
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td---~W~~v~~m-~~~r~~~~~~~~~~~IYv~GG~~~~~~---~~~~ve~Ydp~~ 489 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNN---IWETLPNF-WTGTIRPGVVSHKDDIYVVCDIKDEKN---VKTCIFRYNTNT 489 (557)
T ss_pred cccccccccccccccceEEEECCCCC---eEeecCCC-CcccccCcEEEECCEEEEEeCCCCCCc---cceeEEEecCCC
Confidence 12578999999988 77777776 688999999999999999999875332 135689999999
Q ss_pred -CeEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEECCEEEEEcCCCCCCCcccEEEecccccc
Q 001901 373 -GVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAA 442 (998)
Q Consensus 373 -~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyVfGG~~~~~~l~Dv~~ld~~~~~ 442 (998)
++|+.++.+ |.+|..+++++++++||++||+++. .++.++|...-.
T Consensus 490 ~~~W~~~~~m---------------------~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~ 536 (557)
T PHA02713 490 YNGWELITTT---------------------ESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYE 536 (557)
T ss_pred CCCeeEcccc---------------------CcccccceeEEECCEEEEEeeecce---eehhhcCccccc
Confidence 899999988 6799999999999999999998863 356666655433
No 31
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=3.4e-30 Score=296.85 Aligned_cols=283 Identities=19% Similarity=0.243 Sum_probs=213.4
Q ss_pred cccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECC--CC
Q 001901 83 EKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVL--TN 160 (998)
Q Consensus 83 ~~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~--t~ 160 (998)
......|.||..++++.+ +++|||+||... +.+|+||+. ++
T Consensus 20 ~~l~~lP~~~~~~~~~~~------------~~~iyv~gG~~~-------------------------~~~~~~d~~~~~~ 62 (376)
T PRK14131 20 EQLPDLPVPFKNGTGAID------------NNTVYVGLGSAG-------------------------TSWYKLDLNAPSK 62 (376)
T ss_pred ccCCCCCcCccCCeEEEE------------CCEEEEEeCCCC-------------------------CeEEEEECCCCCC
Confidence 445678999998888887 789999999621 257899986 47
Q ss_pred cEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCC-----CCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEE
Q 001901 161 KWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPA-----GLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMAL 235 (998)
Q Consensus 161 ~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~-----~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~ 235 (998)
+|..++++ +..+|.+|++++++++|||+||.... ...++++|+||+.++ +|+.++. ..|.+|.+|++++
T Consensus 63 ~W~~l~~~--p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n--~W~~~~~--~~p~~~~~~~~~~ 136 (376)
T PRK14131 63 GWTKIAAF--PGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN--SWQKLDT--RSPVGLAGHVAVS 136 (376)
T ss_pred CeEECCcC--CCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC--EEEeCCC--CCCCcccceEEEE
Confidence 89999876 12589999999999999999998641 134689999999987 4999872 3477888898877
Q ss_pred -ECCcEEEEEcCCCCC----------------------------------CCcccEEEEECCCCCceEEEcccCCCCCCC
Q 001901 236 -VGQRYLMAIGGNDGK----------------------------------RPLADVWALDTAAKPYEWRKLEPEGEGPPP 280 (998)
Q Consensus 236 -~~~~~Lyv~GG~~g~----------------------------------~~lndv~~yD~~s~~~~W~~v~~~~~~P~~ 280 (998)
.++ +||++||.+.. ...+++++||+.++ +|+.+.++ |.+
T Consensus 137 ~~~~-~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~--~W~~~~~~---p~~ 210 (376)
T PRK14131 137 LHNG-KAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN--QWKNAGES---PFL 210 (376)
T ss_pred eeCC-EEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC--eeeECCcC---CCC
Confidence 555 89999998642 12478999999999 99998754 333
Q ss_pred ccceEEEEEeCCEEEEEeccCCCCCCcccEEEEe--cCCCCeEEEEECCCCCCCCcc--------eeEEEEECCEEEEEc
Q 001901 281 CMYATASARSDGLLLLCGGRDASSVPLASAYGLA--KHRDGRWEWAIAPGVSPSPRY--------QHAAVFVNARLHVSG 350 (998)
Q Consensus 281 r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~--~~~~~~W~w~~~~g~~P~pR~--------~hsav~~~~~L~V~G 350 (998)
++.+++++..+++|||+||.........++|.|. +..+ +|..++.+ |.+|. ++.+++++++|||+|
T Consensus 211 ~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~---~W~~~~~~-p~~~~~~~~~~~~~~~a~~~~~~iyv~G 286 (376)
T PRK14131 211 GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNL---KWQKLPDL-PPAPGGSSQEGVAGAFAGYSNGVLLVAG 286 (376)
T ss_pred CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCc---ceeecCCC-CCCCcCCcCCccceEeceeECCEEEEee
Confidence 4566677778999999999865544455666554 3433 66677655 34442 344678899999999
Q ss_pred ccCCCCCc-------------cccCCeEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEECCE
Q 001901 351 GALGGGRM-------------VEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDL 417 (998)
Q Consensus 351 G~~~~~~~-------------~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~ 417 (998)
|.+..... ......+++||+++++|+.+..+ |.+|..|++++++++
T Consensus 287 G~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---------------------p~~r~~~~av~~~~~ 345 (376)
T PRK14131 287 GANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL---------------------PQGLAYGVSVSWNNG 345 (376)
T ss_pred ccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC---------------------CCCccceEEEEeCCE
Confidence 98642210 01123578999999999998877 678999999999999
Q ss_pred EEEEcCCCC-CCCcccEEEeccc
Q 001901 418 IFIYGGLRG-GVLLDDLLVAEDL 439 (998)
Q Consensus 418 LyVfGG~~~-~~~l~Dv~~ld~~ 439 (998)
|||+||... ...++|++.++..
T Consensus 346 iyv~GG~~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 346 VLLIGGETAGGKAVSDVTLLSWD 368 (376)
T ss_pred EEEEcCCCCCCcEeeeEEEEEEc
Confidence 999999764 4679999988743
No 32
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=5.5e-30 Score=306.62 Aligned_cols=244 Identities=24% Similarity=0.426 Sum_probs=217.2
Q ss_pred eeecccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCC-CCCCCCCCCCCCCCCCccccccccCCcEEEEECC
Q 001901 80 AVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATA-LEGNSAASGTPSSAGSAGIRLAGATADVHCYDVL 158 (998)
Q Consensus 80 ~~~~~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~ 158 (998)
..+......|.+|..|+++++ +++||++||.+. .. ..+.+++||+.
T Consensus 311 ~~w~~~a~m~~~r~~~~~~~~------------~~~lYv~GG~~~~~~---------------------~l~~ve~YD~~ 357 (571)
T KOG4441|consen 311 NEWSSLAPMPSPRCRVGVAVL------------NGKLYVVGGYDSGSD---------------------RLSSVERYDPR 357 (571)
T ss_pred CcEeecCCCCcccccccEEEE------------CCEEEEEccccCCCc---------------------ccceEEEecCC
Confidence 344566788999999999999 789999999984 32 78999999999
Q ss_pred CCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECC
Q 001901 159 TNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQ 238 (998)
Q Consensus 159 t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 238 (998)
+++|+.++++ ..+|..|++++++++||+.||.+ +...++.+++||+.++ +|+.+. +|+.+|++|+++++++
T Consensus 358 ~~~W~~~a~M---~~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~YDp~~~--~W~~va---~m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 358 TNQWTPVAPM---NTKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECYDPVTN--KWTPVA---PMLTRRSGHGVAVLGG 428 (571)
T ss_pred CCceeccCCc---cCccccceeEEECCEEEEEeccc-cccccccEEEecCCCC--cccccC---CCCcceeeeEEEEECC
Confidence 9999999998 89999999999999999999996 4556789999999998 599997 8999999999999998
Q ss_pred cEEEEEcCCCCCC-CcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCC
Q 001901 239 RYLMAIGGNDGKR-PLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHR 317 (998)
Q Consensus 239 ~~Lyv~GG~~g~~-~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~ 317 (998)
+||++||.++.. +++.+++||+.++ +|+.++++.. ++.++++++.+++||++||+++ ...+..++.|++.+
T Consensus 429 -~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~----~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 429 -KLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNT----RRSGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPET 500 (571)
T ss_pred -EEEEEcCcCCCccccceEEEEcCCCC--ceeecCCccc----ccccceEEEECCEEEEECCccC-CCccceEEEEcCCC
Confidence 899999999877 8999999999999 9999999977 5666667777999999999998 44677899999999
Q ss_pred CCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcccC
Q 001901 318 DGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (998)
Q Consensus 318 ~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~~ 381 (998)
+ +|..++++ +.+|..++++.+++++|++||+++... ++.+..||+.+++|+....+
T Consensus 501 ~---~W~~v~~m-~~~rs~~g~~~~~~~ly~vGG~~~~~~----l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 501 N---QWTMVAPM-TSPRSAVGVVVLGGKLYAVGGFDGNNN----LNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred C---ceeEcccC-ccccccccEEEECCEEEEEecccCccc----cceeEEcCCCCCceeeCCCc
Confidence 9 77777665 689999999999999999999877654 78999999999999998874
No 33
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.97 E-value=2.3e-30 Score=277.15 Aligned_cols=218 Identities=47% Similarity=0.755 Sum_probs=174.7
Q ss_pred EEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhh
Q 001901 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINAL 780 (998)
Q Consensus 701 ~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ 780 (998)
+|||||||++.+|.++|+.++....+ .+||||||||||+++.||+.+|+.++.. |.++++||||||.+.++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d------~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~ 73 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPND------KLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFL 73 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCC------EEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhh
Confidence 58999999999999999999886554 8999999999999999999999999888 8899999999999998887
Q ss_pred cCChHHHH-----HHhCCCcchhhhhhhhhhhcccceeEEEcC-eEEEecCCccCcccCHHhhhhccCCcccCCCCccee
Q 001901 781 FGFRIECI-----ERMGERDGIWAWHRINRLFNWLPLAALIEK-KIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLM 854 (998)
Q Consensus 781 ~gf~~e~~-----~~~g~~~~~~~~~~~~~~f~~LP~aa~i~~-~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~ 854 (998)
+++..+.. ..........++..+.++|..||+++.++. +++|||||+.+.....+++. ..+ ......
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~~-~~~~~~ 146 (225)
T cd00144 74 YGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EEP-EDQLPE 146 (225)
T ss_pred cCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cCc-ccccce
Confidence 77664421 001111234577888899999999999987 99999999998866554444 111 123678
Q ss_pred ccccCCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCe
Q 001901 855 DLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNA 934 (998)
Q Consensus 855 dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ 934 (998)
+++|++|.... .....+.|+. |+++++.|++.++.++|||||+++..|+.....+++|||+|++.|++..+|.
T Consensus 147 ~~lw~r~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~ 219 (225)
T cd00144 147 DLLWSDPLELP--GGFGSSRRGG-----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNK 219 (225)
T ss_pred eeeecCCCCCC--CCCcCCCCCC-----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCcc
Confidence 99999997532 2222333433 8999999999999999999999999998767789999999999998877777
Q ss_pred EEEEE
Q 001901 935 GAILV 939 (998)
Q Consensus 935 ga~l~ 939 (998)
.+++.
T Consensus 220 l~~~~ 224 (225)
T cd00144 220 LAALV 224 (225)
T ss_pred EEEEe
Confidence 77654
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=4.2e-30 Score=276.80 Aligned_cols=267 Identities=27% Similarity=0.473 Sum_probs=220.9
Q ss_pred eeecccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCC
Q 001901 80 AVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT 159 (998)
Q Consensus 80 ~~~~~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t 159 (998)
.+.+....+|.||.+.++++-+. .+.|++|||...+.... -+++|+|.||+.+
T Consensus 55 ~~~e~~~~~PspRsn~sl~~nPe----------keELilfGGEf~ngqkT-----------------~vYndLy~Yn~k~ 107 (521)
T KOG1230|consen 55 HVVETSVPPPSPRSNPSLFANPE----------KEELILFGGEFYNGQKT-----------------HVYNDLYSYNTKK 107 (521)
T ss_pred eeeeccCCCCCCCCCcceeeccC----------cceeEEecceeecceeE-----------------EEeeeeeEEeccc
Confidence 34566778999999999999754 56899999987654321 1899999999999
Q ss_pred CcEEEecCCCCCCCCccceEEEEeC-CEEEEEeCCCC--C---CCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEE
Q 001901 160 NKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGP--A---GLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVM 233 (998)
Q Consensus 160 ~~W~~l~~~g~~P~pR~~hsa~~~~-~~lyVfGG~~~--~---~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~ 233 (998)
++|+++..- +.|.||++|.++++. +.+|+|||.-. . .....|+|+||+.++ +|.++...| .|.+|.+|-|
T Consensus 108 ~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~tr--kweql~~~g-~PS~RSGHRM 183 (521)
T KOG1230|consen 108 NEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTR--KWEQLEFGG-GPSPRSGHRM 183 (521)
T ss_pred cceeEeccC-CCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccc--hheeeccCC-CCCCCcccee
Confidence 999999643 469999999999996 79999999532 1 234699999999998 599998665 7999999999
Q ss_pred EEECCcEEEEEcCCCC----CCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCC-------
Q 001901 234 ALVGQRYLMAIGGNDG----KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA------- 302 (998)
Q Consensus 234 ~~~~~~~Lyv~GG~~g----~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~------- 302 (998)
+++.. +|++|||+.. ..|+||+|+||+.+- +|+++.+.+..|.+|.++...+..++.|||.||+..
T Consensus 184 vawK~-~lilFGGFhd~nr~y~YyNDvy~FdLdty--kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~ 260 (521)
T KOG1230|consen 184 VAWKR-QLILFGGFHDSNRDYIYYNDVYAFDLDTY--KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDV 260 (521)
T ss_pred EEeee-eEEEEcceecCCCceEEeeeeEEEeccce--eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhh
Confidence 99998 8999999954 346999999999888 999999988889999999888888999999999742
Q ss_pred -CCCCcccEEEEecCC--CCeEEEEECC--CCCCCCcceeEEEEEC-CEEEEEcccCCCC-----CccccCCeEEEEECC
Q 001901 303 -SSVPLASAYGLAKHR--DGRWEWAIAP--GVSPSPRYQHAAVFVN-ARLHVSGGALGGG-----RMVEDSSSVAVLDTA 371 (998)
Q Consensus 303 -~~~~~~dv~~~~~~~--~~~W~w~~~~--g~~P~pR~~hsav~~~-~~L~V~GG~~~~~-----~~~~~~~dv~vyD~~ 371 (998)
.+...+|+|.+++.. ..+|.|..+. ++.|.||.++++++.. ++-+.|||..+-. -.....|++|.||+.
T Consensus 261 dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt 340 (521)
T KOG1230|consen 261 DKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLT 340 (521)
T ss_pred hcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecc
Confidence 345689999998876 4589998886 6889999999999885 5999999986511 111348999999999
Q ss_pred CCeEEEccc
Q 001901 372 AGVWCDTKS 380 (998)
Q Consensus 372 t~~W~~v~~ 380 (998)
.++|.....
T Consensus 341 ~nrW~~~ql 349 (521)
T KOG1230|consen 341 RNRWSEGQL 349 (521)
T ss_pred cchhhHhhh
Confidence 999987643
No 35
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=2.7e-29 Score=301.82 Aligned_cols=241 Identities=11% Similarity=0.120 Sum_probs=200.5
Q ss_pred ecccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCc
Q 001901 82 IEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNK 161 (998)
Q Consensus 82 ~~~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~ 161 (998)
+......|.+|.+|+++++ +++||++||...... .++++++||+.+++
T Consensus 284 W~~l~~mp~~r~~~~~a~l------------~~~IYviGG~~~~~~--------------------~~~~v~~Yd~~~n~ 331 (557)
T PHA02713 284 YSVISTIPNHIINYASAIV------------DNEIIIAGGYNFNNP--------------------SLNKVYKINIENKI 331 (557)
T ss_pred EEECCCCCccccceEEEEE------------CCEEEEEcCCCCCCC--------------------ccceEEEEECCCCe
Confidence 3445578899999999988 799999999753221 56899999999999
Q ss_pred EEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEE
Q 001901 162 WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYL 241 (998)
Q Consensus 162 W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~L 241 (998)
|..++++ |.+|..|++++++++||++||.+. ....+++++||+.+++ |+.++ ++|.+|.+|+++++++ +|
T Consensus 332 W~~~~~m---~~~R~~~~~~~~~g~IYviGG~~~-~~~~~sve~Ydp~~~~--W~~~~---~mp~~r~~~~~~~~~g-~I 401 (557)
T PHA02713 332 HVELPPM---IKNRCRFSLAVIDDTIYAIGGQNG-TNVERTIECYTMGDDK--WKMLP---DMPIALSSYGMCVLDQ-YI 401 (557)
T ss_pred EeeCCCC---cchhhceeEEEECCEEEEECCcCC-CCCCceEEEEECCCCe--EEECC---CCCcccccccEEEECC-EE
Confidence 9999887 899999999999999999999853 3456889999999984 99988 8999999999999987 89
Q ss_pred EEEcCCCCCC------------------CcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCC
Q 001901 242 MAIGGNDGKR------------------PLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDAS 303 (998)
Q Consensus 242 yv~GG~~g~~------------------~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~ 303 (998)
|++||.++.. .++.+++||+.++ +|+.++++.. +|. .+++++.+++||++||.++.
T Consensus 402 YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~---~r~-~~~~~~~~~~IYv~GG~~~~ 475 (557)
T PHA02713 402 YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWT---GTI-RPGVVSHKDDIYVVCDIKDE 475 (557)
T ss_pred EEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCCCc---ccc-cCcEEEECCEEEEEeCCCCC
Confidence 9999986421 3678999999999 9999988754 244 45566779999999998754
Q ss_pred CCCcccEEEEecCC-CCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcccC
Q 001901 304 SVPLASAYGLAKHR-DGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (998)
Q Consensus 304 ~~~~~dv~~~~~~~-~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~~ 381 (998)
....+.++.|++.+ + +|..++.+ |.+|..+++++++++|||+||+++. .++++||+.|++|+.+.+.
T Consensus 476 ~~~~~~ve~Ydp~~~~---~W~~~~~m-~~~r~~~~~~~~~~~iyv~Gg~~~~-------~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 476 KNVKTCIFRYNTNTYN---GWELITTT-ESRLSALHTILHDNTIMMLHCYESY-------MLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred CccceeEEEecCCCCC---CeeEcccc-CcccccceeEEECCEEEEEeeecce-------eehhhcCcccccccchhhh
Confidence 43345678999998 6 56666665 7899999999999999999998762 3689999999999988765
No 36
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.97 E-value=9.2e-29 Score=291.73 Aligned_cols=248 Identities=31% Similarity=0.496 Sum_probs=217.3
Q ss_pred CCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcc-cEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEc
Q 001901 167 PFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAE-DLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIG 245 (998)
Q Consensus 167 ~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~-dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~G 245 (998)
..+..|.+|++|+++.+++++|||||........+ |+|+||+.+. .|......|..|.+|++|+++++++ +||+||
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~--~w~~~~~~g~~p~~r~g~~~~~~~~-~l~lfG 129 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQ--LWTKPAATGDEPSPRYGHSLSAVGD-KLYLFG 129 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCc--ccccccccCCCCCcccceeEEEECC-eEEEEc
Confidence 45567999999999999999999999865544333 6999999986 5999999999999999999999998 899999
Q ss_pred CCCC-CCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEE
Q 001901 246 GNDG-KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWA 324 (998)
Q Consensus 246 G~~g-~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~ 324 (998)
|.+. ...+++++.||+.+. +|..+.+.+.+|++|.+|+++++ +++||||||.+.....++++|.|+..+. +|...
T Consensus 130 G~~~~~~~~~~l~~~d~~t~--~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~~~~ndl~i~d~~~~-~W~~~ 205 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTR--TWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTGDSLNDLHIYDLETS-TWSEL 205 (482)
T ss_pred cccCCCCChhheEeccCCCC--cEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcccceeeeeeeccccc-cceec
Confidence 9984 666899999999999 99999999998888988888877 6999999999888778999999999877 68888
Q ss_pred ECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCC
Q 001901 325 IAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELT 404 (998)
Q Consensus 325 ~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~ 404 (998)
.+.+..|.||++|++++++++++|+||.+... .+++|+|+||+.+.+|.++...+ ..|.
T Consensus 206 ~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~---~~l~D~~~ldl~~~~W~~~~~~g------------------~~p~ 264 (482)
T KOG0379|consen 206 DTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGD---VYLNDVHILDLSTWEWKLLPTGG------------------DLPS 264 (482)
T ss_pred ccCCCCCCCCCCceEEEECCeEEEEeccccCC---ceecceEeeecccceeeeccccC------------------CCCC
Confidence 88899999999999999999999999988433 35899999999999999776653 3377
Q ss_pred CcceeEEEEECCEEEEEcCCCCC-C-CcccEEEecccccc
Q 001901 405 RRCRHAAAAVGDLIFIYGGLRGG-V-LLDDLLVAEDLAAA 442 (998)
Q Consensus 405 ~R~~hsa~~~~~~LyVfGG~~~~-~-~l~Dv~~ld~~~~~ 442 (998)
+|++|+.++.+.+++|+||.... . .+.|+|.|+.....
T Consensus 265 ~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~ 304 (482)
T KOG0379|consen 265 PRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLV 304 (482)
T ss_pred CcceeeeEEECCEEEEEcCCcccccccccccccccccccc
Confidence 99999999999999999997764 3 79999999987433
No 37
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=8.8e-28 Score=289.88 Aligned_cols=251 Identities=16% Similarity=0.250 Sum_probs=207.7
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCc
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~ 229 (998)
..+..|+..+.+|..+... | .+..|+++++++.|||+||........+++++||+.++ +|..++ ++|.+|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~---~~~~~R~ 334 (534)
T PHA03098 264 YNYITNYSPLSEINTIIDI---H-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTK--SWNKVP---ELIYPRK 334 (534)
T ss_pred ceeeecchhhhhcccccCc---c-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCC--eeeECC---CCCcccc
Confidence 3456788888899988643 3 35567999999999999998766667789999999987 498887 8899999
Q ss_pred ccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCccc
Q 001901 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLAS 309 (998)
Q Consensus 230 ~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~d 309 (998)
+|+++++++ +||++||.++...++++++||+.++ +|+.+++++ .+|..+++ +..+++||++||.......+++
T Consensus 335 ~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~lp---~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~ 407 (534)
T PHA03098 335 NPGVTVFNN-RIYVIGGIYNSISLNTVESWKPGES--KWREEPPLI---FPRYNPCV-VNVNNLIYVIGGISKNDELLKT 407 (534)
T ss_pred cceEEEECC-EEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCcC---cCCccceE-EEECCEEEEECCcCCCCcccce
Confidence 999999987 8999999987778899999999999 999987764 44655554 5669999999998655556789
Q ss_pred EEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcccCcCCCCCCC
Q 001901 310 AYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGR 389 (998)
Q Consensus 310 v~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~ 389 (998)
++.|++.++ +|...+++ |.+|.+|+++.++++|||+||.+..... ...+.+++||+.+++|+.++.+
T Consensus 408 v~~yd~~t~---~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~-~~~~~v~~yd~~~~~W~~~~~~-------- 474 (534)
T PHA03098 408 VECFSLNTN---KWSKGSPL-PISHYGGCAIYHDGKIYVIGGISYIDNI-KVYNIVESYNPVTNKWTELSSL-------- 474 (534)
T ss_pred EEEEeCCCC---eeeecCCC-CccccCceEEEECCEEEEECCccCCCCC-cccceEEEecCCCCceeeCCCC--------
Confidence 999999877 66666654 7899999999999999999998654321 2256799999999999999876
Q ss_pred CccccCCCCCccCCCCcceeEEEEECCEEEEEcCCCCCCCcccEEEecccccc
Q 001901 390 YSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAA 442 (998)
Q Consensus 390 ~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyVfGG~~~~~~l~Dv~~ld~~~~~ 442 (998)
+.+|..|++++++++|||+||.++....++++++|...-.
T Consensus 475 -------------~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 475 -------------NFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred -------------CcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 5589999999999999999999877778999999866543
No 38
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=5.9e-27 Score=282.67 Aligned_cols=234 Identities=18% Similarity=0.282 Sum_probs=193.5
Q ss_pred CcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEecCCCCC
Q 001901 92 RCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEP 171 (998)
Q Consensus 92 R~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~g~~ 171 (998)
+..|+++++ +++||++||...... ..+++++||+.+++|..++.+
T Consensus 285 ~~~~~~~~~------------~~~lyv~GG~~~~~~--------------------~~~~v~~yd~~~~~W~~~~~~--- 329 (534)
T PHA03098 285 VYCFGSVVL------------NNVIYFIGGMNKNNL--------------------SVNSVVSYDTKTKSWNKVPEL--- 329 (534)
T ss_pred cccceEEEE------------CCEEEEECCCcCCCC--------------------eeccEEEEeCCCCeeeECCCC---
Confidence 445677777 789999999865432 567999999999999998876
Q ss_pred CCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCC-C
Q 001901 172 PTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDG-K 250 (998)
Q Consensus 172 P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g-~ 250 (998)
|.+|.+|++++++++||++||.. .....+++++||+.+++ |+.++ ++|.+|++|+++.+++ +||++||... .
T Consensus 330 ~~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~--W~~~~---~lp~~r~~~~~~~~~~-~iYv~GG~~~~~ 402 (534)
T PHA03098 330 IYPRKNPGVTVFNNRIYVIGGIY-NSISLNTVESWKPGESK--WREEP---PLIFPRYNPCVVNVNN-LIYVIGGISKND 402 (534)
T ss_pred CcccccceEEEECCEEEEEeCCC-CCEecceEEEEcCCCCc--eeeCC---CcCcCCccceEEEECC-EEEEECCcCCCC
Confidence 78999999999999999999986 34457899999999874 99887 8999999999999988 8999999743 4
Q ss_pred CCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCC--CCcccEEEEecCCCCeEEEEECCC
Q 001901 251 RPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS--VPLASAYGLAKHRDGRWEWAIAPG 328 (998)
Q Consensus 251 ~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~--~~~~dv~~~~~~~~~~W~w~~~~g 328 (998)
..++++++||+.++ +|+.+.++ |.+|..|+ ++..+++||++||.+... ..++.++.|++.++ +|..++.
T Consensus 403 ~~~~~v~~yd~~t~--~W~~~~~~---p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~---~W~~~~~ 473 (534)
T PHA03098 403 ELLKTVECFSLNTN--KWSKGSPL---PISHYGGC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN---KWTELSS 473 (534)
T ss_pred cccceEEEEeCCCC--eeeecCCC---CccccCce-EEEECCEEEEECCccCCCCCcccceEEEecCCCC---ceeeCCC
Confidence 45799999999999 99998765 34455554 555699999999986443 23567999999887 6667765
Q ss_pred CCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcccC
Q 001901 329 VSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (998)
Q Consensus 329 ~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~~ 381 (998)
+ |.+|..++++.++++|||+||.+... ..+++++||+++++|+.++..
T Consensus 474 ~-~~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 474 L-NFPRINASLCIFNNKIYVVGGDKYEY----YINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred C-CcccccceEEEECCEEEEEcCCcCCc----ccceeEEEeCCCCEEEecCCC
Confidence 5 67899999999999999999987543 267899999999999998875
No 39
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=4.8e-26 Score=257.27 Aligned_cols=225 Identities=18% Similarity=0.205 Sum_probs=179.8
Q ss_pred cccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcE
Q 001901 83 EKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKW 162 (998)
Q Consensus 83 ~~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W 162 (998)
......|.||..|+++++ +++||++||..... .++++++||+.+++|
T Consensus 54 ~~~~~lp~~r~~~~~~~~------------~~~lyviGG~~~~~---------------------~~~~v~~~d~~~~~w 100 (323)
T TIGR03548 54 VKDGQLPYEAAYGASVSV------------ENGIYYIGGSNSSE---------------------RFSSVYRITLDESKE 100 (323)
T ss_pred EEcccCCccccceEEEEE------------CCEEEEEcCCCCCC---------------------CceeEEEEEEcCCce
Confidence 344578999988888887 78999999986433 678999999999998
Q ss_pred ----EEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCC-CCCcccEEEEEC
Q 001901 163 ----SRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP-GPRYGHVMALVG 237 (998)
Q Consensus 163 ----~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P-~~R~~hs~~~~~ 237 (998)
+.+++ .|.+|..|++++++++|||+||... +...+++++||+.++ +|+.++ ++| .+|..|++++++
T Consensus 101 ~~~~~~~~~---lp~~~~~~~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~~~~--~W~~~~---~~p~~~r~~~~~~~~~ 171 (323)
T TIGR03548 101 ELICETIGN---LPFTFENGSACYKDGTLYVGGGNRN-GKPSNKSYLFNLETQ--EWFELP---DFPGEPRVQPVCVKLQ 171 (323)
T ss_pred eeeeeEcCC---CCcCccCceEEEECCEEEEEeCcCC-CccCceEEEEcCCCC--CeeECC---CCCCCCCCcceEEEEC
Confidence 44444 4899999999999999999999743 345789999999987 499987 666 479999998888
Q ss_pred CcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCC--CCCCccceEEEEEeCCEEEEEeccCCCCC----------
Q 001901 238 QRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGE--GPPPCMYATASARSDGLLLLCGGRDASSV---------- 305 (998)
Q Consensus 238 ~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~--~P~~r~~~~a~~~~~~~lyvfGG~~~~~~---------- 305 (998)
+ +||||||.++.. ..++++||+.++ +|+.+.++.. .|..+..++++++.+++|||+||.+....
T Consensus 172 ~-~iYv~GG~~~~~-~~~~~~yd~~~~--~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 247 (323)
T TIGR03548 172 N-ELYVFGGGSNIA-YTDGYKYSPKKN--QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATM 247 (323)
T ss_pred C-EEEEEcCCCCcc-ccceEEEecCCC--eeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhc
Confidence 7 899999987643 468999999999 9999987643 23334456666677899999999864310
Q ss_pred ---------------------CcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCC
Q 001901 306 ---------------------PLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGG 356 (998)
Q Consensus 306 ---------------------~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~ 356 (998)
..++++.||+.++ +|..++.++..+|..++++.++++|||+||....+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 248 KDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG---KWKSIGNSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred cchhhhhhHHHHhCCCccccCcCceEEEEECCCC---eeeEcccccccccCchheEEECCEEEEEeccccCC
Confidence 1257999999988 67776655446899999999999999999986544
No 40
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=5.2e-25 Score=261.11 Aligned_cols=207 Identities=18% Similarity=0.276 Sum_probs=173.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeC
Q 001901 113 GPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGG 192 (998)
Q Consensus 113 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG 192 (998)
++.||++||..... ..+.+++||+.+++|..++++ |.+|..|++++++++||++||
T Consensus 271 ~~~lyviGG~~~~~---------------------~~~~v~~Ydp~~~~W~~~~~m---~~~r~~~~~v~~~~~iYviGG 326 (480)
T PHA02790 271 GEVVYLIGGWMNNE---------------------IHNNAIAVNYISNNWIPIPPM---NSPRLYASGVPANNKLYVVGG 326 (480)
T ss_pred CCEEEEEcCCCCCC---------------------cCCeEEEEECCCCEEEECCCC---CchhhcceEEEECCEEEEECC
Confidence 78999999985432 667899999999999999987 889999999999999999999
Q ss_pred CCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcc
Q 001901 193 IGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (998)
Q Consensus 193 ~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~ 272 (998)
... .+.+++||+.++ +|..++ ++|.+|.+|+++++++ +||++||.++. .+.+++||+.++ +|+.++
T Consensus 327 ~~~----~~sve~ydp~~n--~W~~~~---~l~~~r~~~~~~~~~g-~IYviGG~~~~--~~~ve~ydp~~~--~W~~~~ 392 (480)
T PHA02790 327 LPN----PTSVERWFHGDA--AWVNMP---SLLKPRCNPAVASINN-VIYVIGGHSET--DTTTEYLLPNHD--QWQFGP 392 (480)
T ss_pred cCC----CCceEEEECCCC--eEEECC---CCCCCCcccEEEEECC-EEEEecCcCCC--CccEEEEeCCCC--EEEeCC
Confidence 742 256899999887 499987 8999999999999988 89999998654 368999999999 999998
Q ss_pred cCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEccc
Q 001901 273 PEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGA 352 (998)
Q Consensus 273 ~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~ 352 (998)
++.. +|..+ ++++.+++||++||. +..|++.++ +|..++++ |.+|..+++++++++|||+||.
T Consensus 393 ~m~~---~r~~~-~~~~~~~~IYv~GG~---------~e~ydp~~~---~W~~~~~m-~~~r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 393 STYY---PHYKS-CALVFGRRLFLVGRN---------AEFYCESSN---TWTLIDDP-IYPRDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred CCCC---ccccc-eEEEECCEEEEECCc---------eEEecCCCC---cEeEcCCC-CCCccccEEEEECCEEEEECCc
Confidence 7644 35554 555679999999983 456777776 66667665 6899999999999999999998
Q ss_pred CCCCCccccCCeEEEEECCCCeEEEc
Q 001901 353 LGGGRMVEDSSSVAVLDTAAGVWCDT 378 (998)
Q Consensus 353 ~~~~~~~~~~~dv~vyD~~t~~W~~v 378 (998)
++.. ..+.+++||+.+++|+..
T Consensus 456 ~~~~----~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 456 YRGS----YIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CCCc----ccceEEEEECCCCeEEec
Confidence 7432 257899999999999764
No 41
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.93 E-value=2.8e-25 Score=239.71 Aligned_cols=248 Identities=23% Similarity=0.367 Sum_probs=201.4
Q ss_pred CCCCCccceEEEEeC--CEEEEEeCCCCCC---CCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEE
Q 001901 170 EPPTPRAAHVATAVG--TMVVIQGGIGPAG---LSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAI 244 (998)
Q Consensus 170 ~~P~pR~~hsa~~~~--~~lyVfGG~~~~~---~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~ 244 (998)
.+|+||.+.++++.- +.+++|||.-.++ ...+|+|.||+.++. |..+... ..|.||+.|.++++..+.||+|
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~e--Wkk~~sp-n~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNE--WKKVVSP-NAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccc--eeEeccC-CCcCCCccceeEEeccCeEEEe
Confidence 479999999998873 4999999954333 346999999999985 9988733 5689999999999986699999
Q ss_pred cCCCC------CCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCC---CCCcccEEEEec
Q 001901 245 GGNDG------KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDAS---SVPLASAYGLAK 315 (998)
Q Consensus 245 GG~~g------~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~---~~~~~dv~~~~~ 315 (998)
||... ..-+.|+|.||+.++ +|+++...+ .|.+|.+|-+++. ..+|+||||+... ...+||+|.|+.
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~tr--kweql~~~g-~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyNDvy~FdL 214 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTR--KWEQLEFGG-GPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYNDVYAFDL 214 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccc--hheeeccCC-CCCCCccceeEEe-eeeEEEEcceecCCCceEEeeeeEEEec
Confidence 99843 123789999999999 999998776 5888988887766 8899999997432 356899999988
Q ss_pred CCCCeEEEEECCCCCCCCcceeEEEEE-CCEEEEEcccCCCC-----CccccCCeEEEEECCC-----CeEEEcccCcCC
Q 001901 316 HRDGRWEWAIAPGVSPSPRYQHAAVFV-NARLHVSGGALGGG-----RMVEDSSSVAVLDTAA-----GVWCDTKSVVTS 384 (998)
Q Consensus 316 ~~~~~W~w~~~~g~~P~pR~~hsav~~-~~~L~V~GG~~~~~-----~~~~~~~dv~vyD~~t-----~~W~~v~~~~~~ 384 (998)
.+- +|...+.++.-|.||.+|...+. .+.|||+||++... ......+|+|.++++. .+|.++.+.+.+
T Consensus 215 dty-kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~k 293 (521)
T KOG1230|consen 215 DTY-KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVK 293 (521)
T ss_pred cce-eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCC
Confidence 754 77777777777999999999888 99999999985321 0012378999999999 899999988665
Q ss_pred CCCCCCccccCCCCCccCCCCcceeEEEEECC-EEEEEcCCCC---------CCCcccEEEeccccccc
Q 001901 385 PRTGRYSADAAGGDAAVELTRRCRHAAAAVGD-LIFIYGGLRG---------GVLLDDLLVAEDLAAAE 443 (998)
Q Consensus 385 p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~-~LyVfGG~~~---------~~~l~Dv~~ld~~~~~~ 443 (998)
|.+|.++++++..+ +-+.|||..+ +.++||+|.+|+.....
T Consensus 294 ------------------PspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW 344 (521)
T KOG1230|consen 294 ------------------PSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRW 344 (521)
T ss_pred ------------------CCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchh
Confidence 56999999999955 9999999654 47899999999765443
No 42
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.93 E-value=2.4e-24 Score=248.23 Aligned_cols=247 Identities=22% Similarity=0.301 Sum_probs=180.8
Q ss_pred CCC-CCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEe
Q 001901 87 DGP-GPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRI 165 (998)
Q Consensus 87 ~~P-~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l 165 (998)
..| .+|.+|+++++ +++|||+||........ ....++++|+||+.+++|+++
T Consensus 69 ~~p~~~r~~~~~v~~------------~~~IYV~GG~~~~~~~~---------------~~~~~~~v~~YD~~~n~W~~~ 121 (376)
T PRK14131 69 AFPGGPREQAVAAFI------------DGKLYVFGGIGKTNSEG---------------SPQVFDDVYKYDPKTNSWQKL 121 (376)
T ss_pred cCCCCCcccceEEEE------------CCEEEEEcCCCCCCCCC---------------ceeEcccEEEEeCCCCEEEeC
Confidence 445 48999999988 78999999986411000 001578999999999999999
Q ss_pred cCCCCCCCCccceEEEE-eCCEEEEEeCCCCCC---------------------------------CCcccEEEEEcCCC
Q 001901 166 TPFGEPPTPRAAHVATA-VGTMVVIQGGIGPAG---------------------------------LSAEDLHVLDLTQQ 211 (998)
Q Consensus 166 ~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~---------------------------------~~~~dv~~~Dl~t~ 211 (998)
+.. .|.+|.+|++++ .+++||++||..... ...+++++||+.++
T Consensus 122 ~~~--~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~ 199 (376)
T PRK14131 122 DTR--SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN 199 (376)
T ss_pred CCC--CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC
Confidence 853 377788898887 789999999975310 12478999999998
Q ss_pred CCceEEeeecCCCCC-CCcccEEEEECCcEEEEEcCCCCCC-CcccEEE--EECCCCCceEEEcccCCCCCC---C-ccc
Q 001901 212 RPRWHRVVVQGPGPG-PRYGHVMALVGQRYLMAIGGNDGKR-PLADVWA--LDTAAKPYEWRKLEPEGEGPP---P-CMY 283 (998)
Q Consensus 212 t~~W~~l~~~g~~P~-~R~~hs~~~~~~~~Lyv~GG~~g~~-~lndv~~--yD~~s~~~~W~~v~~~~~~P~---~-r~~ 283 (998)
. |+.+. ++|. +|.+|+++.+++ +|||+||..... ...++|. ||+.++ +|+.+.+++.++. + ++.
T Consensus 200 ~--W~~~~---~~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~--~W~~~~~~p~~~~~~~~~~~~ 271 (376)
T PRK14131 200 Q--WKNAG---ESPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNL--KWQKLPDLPPAPGGSSQEGVA 271 (376)
T ss_pred e--eeECC---cCCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCc--ceeecCCCCCCCcCCcCCccc
Confidence 4 99876 7785 788899888887 899999975422 3455554 466777 9999987754321 1 123
Q ss_pred eEEEEEeCCEEEEEeccCCCCC----------------CcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEE
Q 001901 284 ATASARSDGLLLLCGGRDASSV----------------PLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLH 347 (998)
Q Consensus 284 ~~a~~~~~~~lyvfGG~~~~~~----------------~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~ 347 (998)
++.+++.+++|||+||.+.... ....+..|++.++ +|..+..+ |.+|..++++.++++||
T Consensus 272 ~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~l-p~~r~~~~av~~~~~iy 347 (376)
T PRK14131 272 GAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG---KWQKVGEL-PQGLAYGVSVSWNNGVL 347 (376)
T ss_pred eEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC---cccccCcC-CCCccceEEEEeCCEEE
Confidence 3445667999999999753210 1123556777766 55566554 78999999999999999
Q ss_pred EEcccCCCCCccccCCeEEEEECCCCeEEE
Q 001901 348 VSGGALGGGRMVEDSSSVAVLDTAAGVWCD 377 (998)
Q Consensus 348 V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~ 377 (998)
|+||..... ...+++++|+++.+.|+.
T Consensus 348 v~GG~~~~~---~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 348 LIGGETAGG---KAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEcCCCCCC---cEeeeEEEEEEcCCEEEE
Confidence 999986543 237899999999888864
No 43
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=2.2e-25 Score=244.32 Aligned_cols=255 Identities=25% Similarity=0.376 Sum_probs=203.2
Q ss_pred eeecccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCC
Q 001901 80 AVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT 159 (998)
Q Consensus 80 ~~~~~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t 159 (998)
......|+.|.+-..|.++.. |.+||+|||...... +.||+|.+-...
T Consensus 70 f~PavrGDiPpgcAA~Gfvcd------------GtrilvFGGMvEYGk--------------------YsNdLYELQasR 117 (830)
T KOG4152|consen 70 FAPAVRGDIPPGCAAFGFVCD------------GTRILVFGGMVEYGK--------------------YSNDLYELQASR 117 (830)
T ss_pred ecchhcCCCCCchhhcceEec------------CceEEEEccEeeecc--------------------ccchHHHhhhhh
Confidence 344567899999999999887 899999999987654 889999988888
Q ss_pred CcEEEecC----CCCCCCCccceEEEEeCCEEEEEeCCCCC--------CCCcccEEEEEcCCC--CCceEEeeecCCCC
Q 001901 160 NKWSRITP----FGEPPTPRAAHVATAVGTMVVIQGGIGPA--------GLSAEDLHVLDLTQQ--RPRWHRVVVQGPGP 225 (998)
Q Consensus 160 ~~W~~l~~----~g~~P~pR~~hsa~~~~~~lyVfGG~~~~--------~~~~~dv~~~Dl~t~--t~~W~~l~~~g~~P 225 (998)
-.|+++.+ .|.+|-||.+|+..+++++.|+|||...+ ..+++|+|++++.-. ..-|..+.+.|.+|
T Consensus 118 WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P 197 (830)
T KOG4152|consen 118 WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLP 197 (830)
T ss_pred hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCC
Confidence 88998865 46789999999999999999999996422 246899999999843 34599999999999
Q ss_pred CCCcccEEEEEC-----CcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEecc
Q 001901 226 GPRYGHVMALVG-----QRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGR 300 (998)
Q Consensus 226 ~~R~~hs~~~~~-----~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~ 300 (998)
.+|..|+++++- ..++|||||+.|. .+.|+|.+|+.+. +|.+....+..|.||.-|+++++ +++||||||.
T Consensus 198 ~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl--~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfGGW 273 (830)
T KOG4152|consen 198 PPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTL--TWNKPSLSGVAPLPRSLHSATTI-GNKMYVFGGW 273 (830)
T ss_pred CCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEeccee--ecccccccCCCCCCcccccceee-cceeEEecce
Confidence 999999999982 2389999999885 4899999999988 99999999999999999998877 9999999996
Q ss_pred C-----C--------CCCCcccEEEEecCCCCeEEEEECC----CCCCCCcceeEEEEECCEEEEEcccCCCCCc---cc
Q 001901 301 D-----A--------SSVPLASAYGLAKHRDGRWEWAIAP----GVSPSPRYQHAAVFVNARLHVSGGALGGGRM---VE 360 (998)
Q Consensus 301 ~-----~--------~~~~~~dv~~~~~~~~~~W~w~~~~----g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~---~~ 360 (998)
- . ...+.+.+-+++..+. .|+-.... ...|.+|.+|+++.++.+||+.-|+++-... ..
T Consensus 274 VPl~~~~~~~~~hekEWkCTssl~clNldt~-~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQV 352 (830)
T KOG4152|consen 274 VPLVMDDVKVATHEKEWKCTSSLACLNLDTM-AWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQV 352 (830)
T ss_pred eeeeccccccccccceeeeccceeeeeecch-heeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhcccc
Confidence 1 1 1123444444555544 55543332 2368999999999999999999998764321 13
Q ss_pred cCCeEEEEECC
Q 001901 361 DSSSVAVLDTA 371 (998)
Q Consensus 361 ~~~dv~vyD~~ 371 (998)
...|+|.+|++
T Consensus 353 CCkDlWyLdTe 363 (830)
T KOG4152|consen 353 CCKDLWYLDTE 363 (830)
T ss_pred chhhhhhhccc
Confidence 46788888764
No 44
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.93 E-value=4.2e-24 Score=243.81 Aligned_cols=222 Identities=18% Similarity=0.263 Sum_probs=168.7
Q ss_pred CCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCC-CCCcccEEEEECCcEEEEEcCCCC
Q 001901 171 PPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP-GPRYGHVMALVGQRYLMAIGGNDG 249 (998)
Q Consensus 171 ~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P-~~R~~hs~~~~~~~~Lyv~GG~~g 249 (998)
+|.+|..+++++++++|||+||.. .+++|+||+...+.+|..++ ++| .+|..|+++++++ +|||+||...
T Consensus 4 lp~~~~~~~~~~~~~~vyv~GG~~-----~~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~-~iYv~GG~~~ 74 (346)
T TIGR03547 4 LPVGFKNGTGAIIGDKVYVGLGSA-----GTSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDG-KLYVFGGIGK 74 (346)
T ss_pred CCccccCceEEEECCEEEEEcccc-----CCeeEEEECCCCCCCceECC---CCCCCCcccceEEEECC-EEEEEeCCCC
Confidence 488999999999999999999973 26799999854334699998 888 5899999999988 8999999854
Q ss_pred C------CCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCC-------------------
Q 001901 250 K------RPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS------------------- 304 (998)
Q Consensus 250 ~------~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~------------------- 304 (998)
. ..++++|+||+.++ +|+.+.. ..|..+..+.++++.+++||++||.+...
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~--~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 150 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKN--SWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKD 150 (346)
T ss_pred CCCCCcceecccEEEEECCCC--EEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhh
Confidence 2 25789999999999 9999973 22444555555557899999999986421
Q ss_pred --------------CCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEE-
Q 001901 305 --------------VPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLD- 369 (998)
Q Consensus 305 --------------~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD- 369 (998)
..+++++.|++.++ +|..++.++..+|..|+++.++++|||+||...... ...+++.||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~YDp~t~---~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~~y~~ 224 (346)
T TIGR03547 151 KLIAAYFSQPPEDYFWNKNVLSYDPSTN---QWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGL---RTAEVKQYLF 224 (346)
T ss_pred hhHHHHhCCChhHcCccceEEEEECCCC---ceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCc---cchheEEEEe
Confidence 01478999999988 677777664347899999999999999999864331 134566665
Q ss_pred -CCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEECCEEEEEcCCC
Q 001901 370 -TAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR 425 (998)
Q Consensus 370 -~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyVfGG~~ 425 (998)
+.+++|+.+..++.+ +. ..+..|.+|++++++++|||+||.+
T Consensus 225 ~~~~~~W~~~~~m~~~-r~-------------~~~~~~~~~~a~~~~~~Iyv~GG~~ 267 (346)
T TIGR03547 225 TGGKLEWNKLPPLPPP-KS-------------SSQEGLAGAFAGISNGVLLVAGGAN 267 (346)
T ss_pred cCCCceeeecCCCCCC-CC-------------CccccccEEeeeEECCEEEEeecCC
Confidence 577899999887321 10 0122456788889999999999975
No 45
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=1.1e-23 Score=249.85 Aligned_cols=205 Identities=19% Similarity=0.313 Sum_probs=171.7
Q ss_pred EEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEE
Q 001901 180 ATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWAL 259 (998)
Q Consensus 180 a~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~y 259 (998)
++.+++.||++||.+. ....+.+++||+.++ +|..++ ++|.+|..++++.+++ +||++||.++. +.+++|
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~--~W~~~~---~m~~~r~~~~~v~~~~-~iYviGG~~~~---~sve~y 336 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISN--NWIPIP---PMNSPRLYASGVPANN-KLYVVGGLPNP---TSVERW 336 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCC--EEEECC---CCCchhhcceEEEECC-EEEEECCcCCC---CceEEE
Confidence 3458999999999853 345678999999987 499998 8999999999999987 89999998642 679999
Q ss_pred ECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEE
Q 001901 260 DTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAA 339 (998)
Q Consensus 260 D~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsa 339 (998)
|+.++ +|..+++++. +|. .+++++.+++||++||.++. .+.+..|++.++ +|...+++ |.+|..|++
T Consensus 337 dp~~n--~W~~~~~l~~---~r~-~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~---~W~~~~~m-~~~r~~~~~ 403 (480)
T PHA02790 337 FHGDA--AWVNMPSLLK---PRC-NPAVASINNVIYVIGGHSET---DTTTEYLLPNHD---QWQFGPST-YYPHYKSCA 403 (480)
T ss_pred ECCCC--eEEECCCCCC---CCc-ccEEEEECCEEEEecCcCCC---CccEEEEeCCCC---EEEeCCCC-CCccccceE
Confidence 99999 9999987754 355 45566679999999998643 356788998877 66777765 689999999
Q ss_pred EEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEECCEEE
Q 001901 340 VFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIF 419 (998)
Q Consensus 340 v~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~Ly 419 (998)
++++++|||+||. +++||+++++|+.++++ +.+|..+++++++++||
T Consensus 404 ~~~~~~IYv~GG~------------~e~ydp~~~~W~~~~~m---------------------~~~r~~~~~~v~~~~IY 450 (480)
T PHA02790 404 LVFGRRLFLVGRN------------AEFYCESSNTWTLIDDP---------------------IYPRDNPELIIVDNKLL 450 (480)
T ss_pred EEECCEEEEECCc------------eEEecCCCCcEeEcCCC---------------------CCCccccEEEEECCEEE
Confidence 9999999999983 57899999999999887 66899999999999999
Q ss_pred EEcCCCCCCCcccEEEecccc
Q 001901 420 IYGGLRGGVLLDDLLVAEDLA 440 (998)
Q Consensus 420 VfGG~~~~~~l~Dv~~ld~~~ 440 (998)
|+||+++...++.++++|...
T Consensus 451 viGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 451 LIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EECCcCCCcccceEEEEECCC
Confidence 999988766678888888654
No 46
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.88 E-value=3.8e-22 Score=210.30 Aligned_cols=185 Identities=21% Similarity=0.359 Sum_probs=130.7
Q ss_pred EEEecCCCCHHHHHHHHHHcCCCCCCCCcc--ceeEEEeccccCCCCChHHHHHHHHHhhhc---CCCcEEEeecCcccc
Q 001901 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIA--YIDYLFLGDYVDRGQHSLETITLLLALKVE---YPNNVHLIRGNHEAA 775 (998)
Q Consensus 701 ~vvGDiHG~~~dL~~il~~~g~~~~~~~~~--~~~~vfLGDyVDRG~~s~evl~ll~~lk~~---~p~~v~llrGNHE~~ 775 (998)
+||||||||+..|.++|+.+++......+. ...+||||||||||+++.|||.+|+.|+.. .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 589999999999999999988643221111 227999999999999999999999999854 456899999999999
Q ss_pred chhhhcCChHH-HHHHhCCC--cchhhh---hhhhhhhcccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCC
Q 001901 776 DINALFGFRIE-CIERMGER--DGIWAW---HRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAG 849 (998)
Q Consensus 776 ~~~~~~gf~~e-~~~~~g~~--~~~~~~---~~~~~~f~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~ 849 (998)
.++..+.+... ....+... ....++ ..+.++++.||+...++ ++++||||+.|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~~~-------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGLGP-------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCcHH--------------------
Confidence 88754433211 11111100 001122 34478899999998886 68889999922
Q ss_pred CcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCcEEEEcccccccceEEecCCeEEEEecc
Q 001901 850 SIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSA 924 (998)
Q Consensus 850 ~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa 924 (998)
+|+...- .+.... .=+...++++|+.++.++||+||+.++.|...+++|++|+|.+.
T Consensus 140 -------~w~r~y~-------~~~~~~----~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 140 -------LWYRGYS-------KETSDK----ECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred -------HHhhHhh-------hhhhhc----cchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 3321110 000000 01236788999999999999999999888776899999999873
No 47
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.87 E-value=3.4e-22 Score=216.23 Aligned_cols=131 Identities=22% Similarity=0.364 Sum_probs=98.4
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCCCCCCC---ccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccc
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGD---IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~---~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 774 (998)
++++||||||||++.|.++|+++++....+. ....++||||||||||++|+|||.+|++|. .+.++++||||||.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~ 78 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCN 78 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHH
Confidence 3689999999999999999999987421100 001279999999999999999999999885 44689999999999
Q ss_pred cchhhhcCC-------hHHHHHHhCCC---cchhhhhhhhhhhcccceeEEEc-CeEEEecCCccCc
Q 001901 775 ADINALFGF-------RIECIERMGER---DGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRS 830 (998)
Q Consensus 775 ~~~~~~~gf-------~~e~~~~~g~~---~~~~~~~~~~~~f~~LP~aa~i~-~~il~vHgGi~~~ 830 (998)
+.++...+- ..+....|... ....+++.+.++|+.||++.+++ ++++|||||+.+.
T Consensus 79 ~~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~ 145 (245)
T PRK13625 79 KLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQD 145 (245)
T ss_pred HHHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChH
Confidence 887655331 12222333221 12346678899999999998774 6899999999876
No 48
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.83 E-value=1.2e-20 Score=203.06 Aligned_cols=130 Identities=24% Similarity=0.415 Sum_probs=98.8
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCCCCCC----CccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCcc
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAG----DIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHE 773 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~~~~~----~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 773 (998)
++|.||||||||+..|+++|+++++...+. .....++||||||||||++|.|||.+|+.|+.. .++++||||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcH
Confidence 479999999999999999999998764320 000127999999999999999999999998754 47999999999
Q ss_pred ccchhhhcCCh-------HHHHHHhCCCcchhhhhhhhhhhcccceeEEEc-CeEEEecCCccCc
Q 001901 774 AADINALFGFR-------IECIERMGERDGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRS 830 (998)
Q Consensus 774 ~~~~~~~~gf~-------~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~-~~il~vHgGi~~~ 830 (998)
.+.++...+.. .+....|... ...+.+.+.++|+.||+...++ ++++|||||+++.
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~ 142 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLEETVAQLEAE-SEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEE 142 (234)
T ss_pred HHHHHHhcCCCccccCcccchHHHHhhc-cHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChH
Confidence 98876543311 1222333221 2345678889999999998775 5799999998864
No 49
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.82 E-value=8.9e-20 Score=194.37 Aligned_cols=123 Identities=23% Similarity=0.294 Sum_probs=92.1
Q ss_pred EEEecCCCCHHHHHHHHHHcCCCCCCCC--ccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchh
Q 001901 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGD--IAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADIN 778 (998)
Q Consensus 701 ~vvGDiHG~~~dL~~il~~~g~~~~~~~--~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 778 (998)
+||||||||++.|.++|+++++....+. ....++||||||||||++|.|||.+|+.|+.. .++++|+||||.+.+.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcHHHHH
Confidence 7999999999999999999987532100 00117999999999999999999999998644 4899999999998875
Q ss_pred hhcCC-h----------------HHHHHHhCCCcchhhhhhhhhhhcccceeEEEcCeEEEecCCcc
Q 001901 779 ALFGF-R----------------IECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIG 828 (998)
Q Consensus 779 ~~~gf-~----------------~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~~~il~vHgGi~ 828 (998)
...+. . .+..+.++. ....++.+.++|+.||+.... ++++|||||+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~lP~~~~~-~~~~~VHAg~~ 143 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFRE--HSEEHKDWLEWFKTLPLFLDL-GGVRVVHACWD 143 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhc--cchhHHHHHHHHhcCCcEEEE-CCEEEEECCcC
Confidence 43321 0 112222321 123567788999999999776 47999999985
No 50
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.82 E-value=1.8e-20 Score=202.21 Aligned_cols=129 Identities=22% Similarity=0.372 Sum_probs=99.9
Q ss_pred eEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhh
Q 001901 700 IKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINA 779 (998)
Q Consensus 700 i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~ 779 (998)
++||||||||+..|+++|+++++.+..+ +++|||||||||++|+|||.+|+.|+ .++++|+||||.+.++.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D-----~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~ 71 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKD-----RLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAV 71 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCC-----EEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHH
Confidence 5899999999999999999998764322 89999999999999999999999986 58999999999998887
Q ss_pred hcCChHH----HHHHhCCCcchhhhhhhhhhhcccceeEEEcC-eEEEecCCccCcccCHHhhhhcc
Q 001901 780 LFGFRIE----CIERMGERDGIWAWHRINRLFNWLPLAALIEK-KIICMHGGIGRSINHVEQIENLQ 841 (998)
Q Consensus 780 ~~gf~~e----~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~~-~il~vHgGi~~~~~~~~~i~~i~ 841 (998)
.+|+... ....+- .....+.+.+++..+|+...+++ ++++|||||+|.. ++++...+.
T Consensus 72 ~~g~~~~~~~~t~~~~l---~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w-~~~~~~~~a 134 (257)
T cd07422 72 AAGIKKPKKKDTLDDIL---NAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQW-SIEQALKLA 134 (257)
T ss_pred hcCccccccHhHHHHHH---hccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCC-CHHHHHHHH
Confidence 6664311 111110 01123567888999999988864 8999999999974 455544433
No 51
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.82 E-value=2.2e-19 Score=195.92 Aligned_cols=125 Identities=20% Similarity=0.357 Sum_probs=97.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchh
Q 001901 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADIN 778 (998)
Q Consensus 699 ~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 778 (998)
.++||||||||+..|.++|+++++.+..+ .++|||||||||++|+|||.+|+.+ +.++++|+||||.+.+.
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D-----~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~ 72 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKD-----TLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLA 72 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCC-----EEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHH
Confidence 58999999999999999999998753321 7999999999999999999999987 35799999999999888
Q ss_pred hhcCChHH----HHHHhCCCcchhhhhhhhhhhcccceeEEE-cCeEEEecCCccCcccCHHh
Q 001901 779 ALFGFRIE----CIERMGERDGIWAWHRINRLFNWLPLAALI-EKKIICMHGGIGRSINHVEQ 836 (998)
Q Consensus 779 ~~~gf~~e----~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i-~~~il~vHgGi~~~~~~~~~ 836 (998)
..+|+... ....+- .....+.+.++++.||+...+ ++++++|||||+|.. ++++
T Consensus 73 ~~~g~~~~~~~~~l~~~l---~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~-~~~~ 131 (275)
T PRK00166 73 VAAGIKRNKKKDTLDPIL---EAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQW-DLAT 131 (275)
T ss_pred hhcCCccccchhHHHHHH---ccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCC-CHHH
Confidence 77765321 111110 012345677889999998776 568999999999874 4433
No 52
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.81 E-value=6.7e-20 Score=197.52 Aligned_cols=127 Identities=24% Similarity=0.347 Sum_probs=100.8
Q ss_pred CeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchh
Q 001901 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADIN 778 (998)
Q Consensus 699 ~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 778 (998)
.++||||||||++.|.++|+++++.+..+ +++|||||||||++|+|||.+|.+++ .++++|+||||.+.+.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D-----~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~ 72 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQD-----TLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLA 72 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCC-----EEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHH
Confidence 58999999999999999999998765332 79999999999999999999999874 4688999999999998
Q ss_pred hhcCCh-----HHHHHHhCCCcchhhhhhhhhhhcccceeEEEc-CeEEEecCCccCcccCHHhhhh
Q 001901 779 ALFGFR-----IECIERMGERDGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRSINHVEQIEN 839 (998)
Q Consensus 779 ~~~gf~-----~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~-~~il~vHgGi~~~~~~~~~i~~ 839 (998)
..+|+. +.....+. ....+.+.+++..+|+....+ .++++|||||+|.. ++++...
T Consensus 73 ~~~g~~~~~~~d~l~~~l~----a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w-~l~~a~~ 134 (279)
T TIGR00668 73 VFAGISRNKPKDRLDPLLE----APDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQW-DLQTAKE 134 (279)
T ss_pred HhcCCCccCchHHHHHHHH----ccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCC-cHHHHHH
Confidence 887763 12222121 124567788999999997654 47999999999984 4555443
No 53
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.80 E-value=6.9e-19 Score=189.33 Aligned_cols=82 Identities=32% Similarity=0.479 Sum_probs=66.1
Q ss_pred CeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCC-cEEEeecCccccch
Q 001901 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPN-NVHLIRGNHEAADI 777 (998)
Q Consensus 699 ~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~-~v~llrGNHE~~~~ 777 (998)
++++||||||+++.|.++|+.+.............+||||||||||++|.|||.+|++++..+|. .+++||||||.+.+
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 68999999999999999998764321100001126999999999999999999999999999986 68999999998866
Q ss_pred hhh
Q 001901 778 NAL 780 (998)
Q Consensus 778 ~~~ 780 (998)
..+
T Consensus 83 ~fL 85 (304)
T cd07421 83 AFL 85 (304)
T ss_pred hHh
Confidence 443
No 54
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.78 E-value=6.6e-19 Score=187.46 Aligned_cols=120 Identities=26% Similarity=0.336 Sum_probs=90.4
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccch
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 777 (998)
++++||||||||+..|+++|+.+++.+..+ +++|||||||||++|.|||.+|.. .++++||||||.+.+
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D-----~li~lGDlvDrGp~s~~vl~~l~~------~~~~~v~GNHE~~~l 85 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRD-----LLISVGDLIDRGPQSLRCLQLLEE------HWVRAVRGNHEQMAL 85 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccC-----EEEEcCcccCCCcCHHHHHHHHHc------CCceEeeCchHHHHH
Confidence 489999999999999999999998753221 799999999999999999999976 368899999999988
Q ss_pred hhhcCChHHHHHHhCCC-------cchhhhhhhhhhhcccceeEEE---cCeEEEecCCcc
Q 001901 778 NALFGFRIECIERMGER-------DGIWAWHRINRLFNWLPLAALI---EKKIICMHGGIG 828 (998)
Q Consensus 778 ~~~~gf~~e~~~~~g~~-------~~~~~~~~~~~~f~~LP~aa~i---~~~il~vHgGi~ 828 (998)
+...+-....+...|.. .....+..+.++++.||+...+ ++++++||||++
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 76543211122222211 1122345566889999999765 357999999984
No 55
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.77 E-value=1.4e-18 Score=183.60 Aligned_cols=147 Identities=26% Similarity=0.333 Sum_probs=105.4
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccch
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 777 (998)
++++|||||||++..|.++++..++....+ .++|+|||||||+++.||+.+|.. ..+++||||||.+.+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d-----~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~ 69 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARD-----RLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAI 69 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCC-----EEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHH
Confidence 478999999999999999999987643221 799999999999999999999876 368999999999988
Q ss_pred hhhcC--ChHHHHHHhCCCcc-----hhhhhhhhhhhcccceeEEEc---CeEEEecCCccCcccCHHhhhhccCCcccC
Q 001901 778 NALFG--FRIECIERMGERDG-----IWAWHRINRLFNWLPLAALIE---KKIICMHGGIGRSINHVEQIENLQRPITME 847 (998)
Q Consensus 778 ~~~~g--f~~e~~~~~g~~~~-----~~~~~~~~~~f~~LP~aa~i~---~~il~vHgGi~~~~~~~~~i~~i~rp~~~~ 847 (998)
....+ +..+.+.+++.... ..+++.+.++|+.||+...++ .+++|||||+.+... .+.+.. .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~-~~~~~~--~~~~-- 144 (207)
T cd07424 70 DALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDW-SDGVGA--VTLR-- 144 (207)
T ss_pred hHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchh-hhhhhc--cccC--
Confidence 87655 33344444443311 113455788999999998774 479999999965421 111110 1111
Q ss_pred CCCcceeccccCCCC
Q 001901 848 AGSIVLMDLLWSDPT 862 (998)
Q Consensus 848 ~~~~~~~dlLWsDP~ 862 (998)
.....+++|+++.
T Consensus 145 --~~~~~~~~w~~~~ 157 (207)
T cd07424 145 --PEDIEELLWSRTR 157 (207)
T ss_pred --cccceeeeeccch
Confidence 1256678998764
No 56
>PHA02239 putative protein phosphatase
Probab=99.75 E-value=5.7e-18 Score=181.19 Aligned_cols=124 Identities=25% Similarity=0.370 Sum_probs=91.9
Q ss_pred CeEEEecCCCCHHHHHHHHHHcCCC--CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccc
Q 001901 699 PIKIFGDLHGQFGDLMRLFDEYGSP--STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 776 (998)
Q Consensus 699 ~i~vvGDiHG~~~dL~~il~~~g~~--~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 776 (998)
++++||||||++..|.++++.+... +.+ .+||||||||||++|.+|+.+|+.++. .+.++++|+||||.+.
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d------~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~ 74 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEE------TIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEF 74 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCC------EEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHH
Confidence 6899999999999999999987532 122 799999999999999999999999754 3568999999999987
Q ss_pred hhhhcCC--------------hHHHHHHhCCCcc---------------------------hhhhhhhhhhhcccceeEE
Q 001901 777 INALFGF--------------RIECIERMGERDG---------------------------IWAWHRINRLFNWLPLAAL 815 (998)
Q Consensus 777 ~~~~~gf--------------~~e~~~~~g~~~~---------------------------~~~~~~~~~~f~~LP~aa~ 815 (998)
+....+. ..+....||-... ...+..+..+++.||+...
T Consensus 75 l~~~~~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~ 154 (235)
T PHA02239 75 YNIMENVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYK 154 (235)
T ss_pred HHHHhCchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEE
Confidence 6543211 1223344542210 0123455568888999977
Q ss_pred EcCeEEEecCCccCc
Q 001901 816 IEKKIICMHGGIGRS 830 (998)
Q Consensus 816 i~~~il~vHgGi~~~ 830 (998)
.+ +++|||||+.|.
T Consensus 155 ~~-~~ifVHAGi~p~ 168 (235)
T PHA02239 155 ED-KYIFSHSGGVSW 168 (235)
T ss_pred EC-CEEEEeCCCCCC
Confidence 65 799999999875
No 57
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.71 E-value=1.6e-17 Score=176.54 Aligned_cols=120 Identities=23% Similarity=0.244 Sum_probs=86.9
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccch
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 777 (998)
++++||||||||+..|+++|+.+.+....+ .++|||||||||++|.|||.+|.+ .+++.||||||.+.+
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d-----~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~ 83 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETD-----LLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMAL 83 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCC-----EEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHH
Confidence 489999999999999999999987543221 799999999999999999999865 368999999999888
Q ss_pred hhhcCChHHHHHHhCCCc-------chhhhhhhhhhhcccceeEEEc---CeEEEecCCcc
Q 001901 778 NALFGFRIECIERMGERD-------GIWAWHRINRLFNWLPLAALIE---KKIICMHGGIG 828 (998)
Q Consensus 778 ~~~~gf~~e~~~~~g~~~-------~~~~~~~~~~~f~~LP~aa~i~---~~il~vHgGi~ 828 (998)
.....-....+...|... .......+..+++.||+...+. .++++||||++
T Consensus 84 ~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 84 DAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 654321111111111110 0112233455789999997663 47999999984
No 58
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.67 E-value=4.7e-15 Score=159.87 Aligned_cols=282 Identities=18% Similarity=0.215 Sum_probs=209.1
Q ss_pred ccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCC--Cc
Q 001901 84 KKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLT--NK 161 (998)
Q Consensus 84 ~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t--~~ 161 (998)
+..+.|.+--+-+-..+ ++.+||-=|.. -...|.+|+.. ..
T Consensus 29 ~lPdlPvg~KnG~Ga~i------------g~~~YVGLGs~-------------------------G~afy~ldL~~~~k~ 71 (381)
T COG3055 29 QLPDLPVGFKNGAGALI------------GDTVYVGLGSA-------------------------GTAFYVLDLKKPGKG 71 (381)
T ss_pred cCCCCCcccccccccee------------cceEEEEeccC-------------------------CccceehhhhcCCCC
Confidence 34456666655555555 77888877742 23667888875 57
Q ss_pred EEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCC----CCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEEC
Q 001901 162 WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAG----LSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVG 237 (998)
Q Consensus 162 W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~----~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~ 237 (998)
|++++.. +-.+|....+++++++||||||.+... ...+|+|+||+.+++ |+++.+. .|..-.+|+++.++
T Consensus 72 W~~~a~F--pG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ns--W~kl~t~--sP~gl~G~~~~~~~ 145 (381)
T COG3055 72 WTKIADF--PGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNS--WHKLDTR--SPTGLVGASTFSLN 145 (381)
T ss_pred ceEcccC--CCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCCh--hheeccc--cccccccceeEecC
Confidence 9999987 467899999999999999999987443 347999999999986 9999854 36678899999999
Q ss_pred CcEEEEEcCCCC----------------------------------CCCcccEEEEECCCCCceEEEcccCCCCCCCccc
Q 001901 238 QRYLMAIGGNDG----------------------------------KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMY 283 (998)
Q Consensus 238 ~~~Lyv~GG~~g----------------------------------~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~ 283 (998)
+..+|++||.+. ......++.||+.++ +|+.+...+. -..+
T Consensus 146 ~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n--~W~~~G~~pf---~~~a 220 (381)
T COG3055 146 GTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN--QWRNLGENPF---YGNA 220 (381)
T ss_pred CceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--hhhhcCcCcc---cCcc
Confidence 889999999841 112457899999999 9998764433 3456
Q ss_pred eEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCc------ceeEEEEECCEEEEEcccCCCC-
Q 001901 284 ATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPR------YQHAAVFVNARLHVSGGALGGG- 356 (998)
Q Consensus 284 ~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR------~~hsav~~~~~L~V~GG~~~~~- 356 (998)
.++++..++++.++-|.-........++.++...+ .-+|......++..- .++-.-..++.++|.||.+..+
T Consensus 221 Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~-~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga 299 (381)
T COG3055 221 GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGD-NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGA 299 (381)
T ss_pred CcceeecCCeEEEEcceecCCccccceeEEEeccC-ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhH
Confidence 67788888999999998777777778888877644 446666665433322 2222334468899999963211
Q ss_pred --------------CccccCCeEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEECCEEEEEc
Q 001901 357 --------------RMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYG 422 (998)
Q Consensus 357 --------------~~~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyVfG 422 (998)
.......+||+|| .+.|+.+..+ |.++++..++..++.||++|
T Consensus 300 ~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeL---------------------p~~l~YG~s~~~nn~vl~IG 356 (381)
T COG3055 300 LKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGEL---------------------PQGLAYGVSLSYNNKVLLIG 356 (381)
T ss_pred HHHHHhcccccccchhhhhhceEEEEc--CCceeeeccc---------------------CCCccceEEEecCCcEEEEc
Confidence 1123467899998 9999999888 66888889999999999999
Q ss_pred CC-CCCCCcccEEEec
Q 001901 423 GL-RGGVLLDDLLVAE 437 (998)
Q Consensus 423 G~-~~~~~l~Dv~~ld 437 (998)
|- +++..+..++.+-
T Consensus 357 GE~~~Gka~~~v~~l~ 372 (381)
T COG3055 357 GETSGGKATTRVYSLS 372 (381)
T ss_pred cccCCCeeeeeEEEEE
Confidence 94 4667788887764
No 59
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.52 E-value=3.1e-15 Score=165.33 Aligned_cols=313 Identities=17% Similarity=0.257 Sum_probs=207.4
Q ss_pred CCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEe
Q 001901 86 EDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRI 165 (998)
Q Consensus 86 g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l 165 (998)
...|.-|.||.++.... .+.||++||.++.. .+.|+|.|+...+.|+.+
T Consensus 255 ~~~p~~RgGHQMV~~~~----------~~CiYLYGGWdG~~---------------------~l~DFW~Y~v~e~~W~~i 303 (723)
T KOG2437|consen 255 DNRPGMRGGHQMVIDVQ----------TECVYLYGGWDGTQ---------------------DLADFWAYSVKENQWTCI 303 (723)
T ss_pred ccCccccCcceEEEeCC----------CcEEEEecCcccch---------------------hHHHHHhhcCCcceeEEe
Confidence 36899999999999853 47999999998876 788999999999999999
Q ss_pred cCCCCCCCCccceEEEEeCC--EEEEEeCCCCCC-----CCcccEEEEEcCCCCCceEEeeec---CCCCCCCcccEEEE
Q 001901 166 TPFGEPPTPRAAHVATAVGT--MVVIQGGIGPAG-----LSAEDLHVLDLTQQRPRWHRVVVQ---GPGPGPRYGHVMAL 235 (998)
Q Consensus 166 ~~~g~~P~pR~~hsa~~~~~--~lyVfGG~~~~~-----~~~~dv~~~Dl~t~t~~W~~l~~~---g~~P~~R~~hs~~~ 235 (998)
...+..|..|..|-++.... ++|+.|-+-+.+ ..-.|+|+||..+++ |..+.-. ..-|..-+.|.+++
T Consensus 304 N~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~--W~~ls~dt~~dGGP~~vfDHqM~V 381 (723)
T KOG2437|consen 304 NRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT--WMLLSEDTAADGGPKLVFDHQMCV 381 (723)
T ss_pred ecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCce--eEEecccccccCCcceeecceeeE
Confidence 98888899999999999876 999999754322 235899999999986 9987632 23588899999999
Q ss_pred ECCc-EEEEEcCCCC--C-CCcccEEEEECCCCCceEEEcccCCCC-------CCCccceEEEE-EeCCEEEEEeccCCC
Q 001901 236 VGQR-YLMAIGGNDG--K-RPLADVWALDTAAKPYEWRKLEPEGEG-------PPPCMYATASA-RSDGLLLLCGGRDAS 303 (998)
Q Consensus 236 ~~~~-~Lyv~GG~~g--~-~~lndv~~yD~~s~~~~W~~v~~~~~~-------P~~r~~~~a~~-~~~~~lyvfGG~~~~ 303 (998)
.+++ .+|||||..- + -.+.-++.||+... .|..+...... -..|..|.+-. ..+.++|+|||...+
T Consensus 382 d~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~--~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 382 DSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQ--TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred ecCcceEEEecCeeccCCCccccceEEEecCCc--cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 9873 3999999843 2 34788999999998 88776432110 01133443332 346789999997655
Q ss_pred CCCcccEEEEecCCCCeEE----EEECCCCCCCCcceeEEEEE---CCEEEEEcccCCCCCc--cccCCeEEEEECCCCe
Q 001901 304 SVPLASAYGLAKHRDGRWE----WAIAPGVSPSPRYQHAAVFV---NARLHVSGGALGGGRM--VEDSSSVAVLDTAAGV 374 (998)
Q Consensus 304 ~~~~~dv~~~~~~~~~~W~----w~~~~g~~P~pR~~hsav~~---~~~L~V~GG~~~~~~~--~~~~~dv~vyD~~t~~ 374 (998)
. .++-.+.|+....+.=. ....+.+.|.+-...- +.. ...|++.-|....... ....+++|+|+..+..
T Consensus 460 ~-El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qR-s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~ 537 (723)
T KOG2437|consen 460 T-ELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQR-ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNS 537 (723)
T ss_pred e-EEeehhcceeccccchhhhccCcCccccCCCcchhhh-cccCCCCcchhhhcccchhccCccccccCcEEEEEecccc
Confidence 4 34444444332110000 0001122222211111 222 3467777776432211 1236889999999999
Q ss_pred EEEcccCcCCC-------CCCCCccccCCCCCccCCCCcceeEEEEE--CCEEEEEcCCCCC-----CCcccEEEeccc
Q 001901 375 WCDTKSVVTSP-------RTGRYSADAAGGDAAVELTRRCRHAAAAV--GDLIFIYGGLRGG-----VLLDDLLVAEDL 439 (998)
Q Consensus 375 W~~v~~~~~~p-------~~~~~~~~~~~~~~~~~p~~R~~hsa~~~--~~~LyVfGG~~~~-----~~l~Dv~~ld~~ 439 (998)
|..+....... +..++ .--.....+.+|++|+.++. -.-+|.+||+.+. ..++|.|.++..
T Consensus 538 w~cI~~I~~~~~d~dtvfsvpFp----~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~ 612 (723)
T KOG2437|consen 538 WSCIYKIDQAAKDNDTVFSVPFP----TKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKIC 612 (723)
T ss_pred hhhHhhhHHhhccCCceeeccCC----cccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhc
Confidence 98876552110 00001 01112345789999987655 5568999997653 567888888754
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.40 E-value=1.2e-11 Score=133.86 Aligned_cols=236 Identities=21% Similarity=0.317 Sum_probs=165.6
Q ss_pred CCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEecC
Q 001901 88 GPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITP 167 (998)
Q Consensus 88 ~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~ 167 (998)
+-.+|-+.+++++ +++||||||....... .....+|+|+||+.+++|.++..
T Consensus 79 pG~~rnqa~~a~~------------~~kLyvFgG~Gk~~~~----------------~~~~~nd~Y~y~p~~nsW~kl~t 130 (381)
T COG3055 79 PGGARNQAVAAVI------------GGKLYVFGGYGKSVSS----------------SPQVFNDAYRYDPSTNSWHKLDT 130 (381)
T ss_pred CCcccccchheee------------CCeEEEeeccccCCCC----------------CceEeeeeEEecCCCChhheecc
Confidence 4467888888888 7999999998765531 11289999999999999999998
Q ss_pred CCCCCCCccceEEEEeCC-EEEEEeCCCCC---------------------------------CCCcccEEEEEcCCCCC
Q 001901 168 FGEPPTPRAAHVATAVGT-MVVIQGGIGPA---------------------------------GLSAEDLHVLDLTQQRP 213 (998)
Q Consensus 168 ~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~---------------------------------~~~~~dv~~~Dl~t~t~ 213 (998)
. .|....+|+++.+++ ++|++||.+.. .....+++.|++.++
T Consensus 131 ~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n-- 206 (381)
T COG3055 131 R--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN-- 206 (381)
T ss_pred c--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--
Confidence 7 477788999999988 99999996411 112577888999887
Q ss_pred ceEEeeecCCCC-CCCcccEEEEECCcEEEEEcCCCC-CCCcccEEEEECCCCCceEEEcccCCCCCCCcc---ceEEEE
Q 001901 214 RWHRVVVQGPGP-GPRYGHVMALVGQRYLMAIGGNDG-KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCM---YATASA 288 (998)
Q Consensus 214 ~W~~l~~~g~~P-~~R~~hs~~~~~~~~Lyv~GG~~g-~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~---~~~a~~ 288 (998)
+|..+- ..| .++++++. +..++++.++-|.-- .-+...+++++...+..+|..+.+.+.+..... ..+...
T Consensus 207 ~W~~~G---~~pf~~~aGsa~-~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G 282 (381)
T COG3055 207 QWRNLG---ENPFYGNAGSAV-VIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSG 282 (381)
T ss_pred hhhhcC---cCcccCccCcce-eecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccc
Confidence 488774 444 57777555 444447888877632 234567888888877779999977654332221 122223
Q ss_pred EeCCEEEEEeccCC---------------CC---CCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEc
Q 001901 289 RSDGLLLLCGGRDA---------------SS---VPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSG 350 (998)
Q Consensus 289 ~~~~~lyvfGG~~~---------------~~---~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~G 350 (998)
..++.+++.||..- .+ .-..++|.|+ ++.|+ .+ +..|.++....++..++.||++|
T Consensus 283 ~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d---~g~Wk--~~-GeLp~~l~YG~s~~~nn~vl~IG 356 (381)
T COG3055 283 KSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD---NGSWK--IV-GELPQGLAYGVSLSYNNKVLLIG 356 (381)
T ss_pred eeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc---CCcee--ee-cccCCCccceEEEecCCcEEEEc
Confidence 55788889888421 11 1235677776 44555 33 34477888888899999999999
Q ss_pred ccCCCCCccccCCeEEEE
Q 001901 351 GALGGGRMVEDSSSVAVL 368 (998)
Q Consensus 351 G~~~~~~~~~~~~dv~vy 368 (998)
|.+..+.. ...++.+
T Consensus 357 GE~~~Gka---~~~v~~l 371 (381)
T COG3055 357 GETSGGKA---TTRVYSL 371 (381)
T ss_pred cccCCCee---eeeEEEE
Confidence 99877653 3445544
No 61
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.20 E-value=9.1e-12 Score=138.26 Aligned_cols=210 Identities=21% Similarity=0.362 Sum_probs=154.7
Q ss_pred CCceEEeeecC-------CCCCCCcccEEEEEC-CcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccc
Q 001901 212 RPRWHRVVVQG-------PGPGPRYGHVMALVG-QRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMY 283 (998)
Q Consensus 212 t~~W~~l~~~g-------~~P~~R~~hs~~~~~-~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~ 283 (998)
+.+|+++.... ..|..|.+|-++.-. ++.+|++||.+|-..+.|+|.|+...+ .|+.+...+..|..|.+
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKEN--QWTCINRDTEGPGARSC 315 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcc--eeEEeecCCCCCcchhh
Confidence 35799887654 578899999998764 359999999999999999999999999 99999988888999999
Q ss_pred eEEEEE-eCCEEEEEeccCCCC-----CCcccEEEEecCCCCeEEEEECCCC---CCCCcceeEEEEECCE--EEEEccc
Q 001901 284 ATASAR-SDGLLLLCGGRDASS-----VPLASAYGLAKHRDGRWEWAIAPGV---SPSPRYQHAAVFVNAR--LHVSGGA 352 (998)
Q Consensus 284 ~~a~~~-~~~~lyvfGG~~~~~-----~~~~dv~~~~~~~~~~W~w~~~~g~---~P~pR~~hsav~~~~~--L~V~GG~ 352 (998)
|-++.- ...+||+.|-+-+.. ..-+|.|.||..++ .|........ -|..-+.|.+++.+.+ +||+||.
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~-~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN-TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc-eeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 987763 456999998753221 23578999999877 6655444321 2677899999999887 9999998
Q ss_pred CCCCCccccCCeEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEE--CCEEEEEcCCCCCCCc
Q 001901 353 LGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAV--GDLIFIYGGLRGGVLL 430 (998)
Q Consensus 353 ~~~~~~~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~--~~~LyVfGG~~~~~~l 430 (998)
.-... .....-+|.||.....|..+...... +.+ .-+....|.+|++-.+ ++.+|+|||.+....+
T Consensus 395 ~~~~~-e~~f~GLYaf~~~~~~w~~l~e~~~~----------~~~-vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El 462 (723)
T KOG2437|consen 395 ILTCN-EPQFSGLYAFNCQCQTWKLLREDSCN----------AGP-VVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTEL 462 (723)
T ss_pred eccCC-CccccceEEEecCCccHHHHHHHHhh----------cCc-chhHHHHHHHHHHHhcCCCCeEEeccCcccceEE
Confidence 54322 12367799999999999877654110 011 1223457888887666 5589999997765444
Q ss_pred ccEEEe
Q 001901 431 DDLLVA 436 (998)
Q Consensus 431 ~Dv~~l 436 (998)
+=.+.+
T Consensus 463 ~L~f~y 468 (723)
T KOG2437|consen 463 NLFFSY 468 (723)
T ss_pred eehhcc
Confidence 433333
No 62
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.97 E-value=3.8e-09 Score=105.72 Aligned_cols=78 Identities=29% Similarity=0.372 Sum_probs=57.1
Q ss_pred CeEEEecCCCCHHHH---HHH-HHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHH--HHhhhcCCCcEEEeecCc
Q 001901 699 PIKIFGDLHGQFGDL---MRL-FDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLL--LALKVEYPNNVHLIRGNH 772 (998)
Q Consensus 699 ~i~vvGDiHG~~~dL---~~i-l~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll--~~lk~~~p~~v~llrGNH 772 (998)
+|+++||+|+.+... .+. .........+ -+|++||++|+|..+.+..... +..+...+..+++++|||
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPD------FIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTS------EEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCC------EEEeeccccccccccccchhhhccchhhhhcccccccccccc
Confidence 689999999999987 333 3322222222 6899999999999988877765 555666778999999999
Q ss_pred cccchhhhcC
Q 001901 773 EAADINALFG 782 (998)
Q Consensus 773 E~~~~~~~~g 782 (998)
|.......+.
T Consensus 76 D~~~~~~~~~ 85 (200)
T PF00149_consen 76 DYYSGNSFYG 85 (200)
T ss_dssp SSHHHHHHHH
T ss_pred ccceeccccc
Confidence 9987655443
No 63
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.81 E-value=7.3e-09 Score=102.47 Aligned_cols=147 Identities=35% Similarity=0.484 Sum_probs=118.6
Q ss_pred chhhhcCChHHHHHHhCCCcchhhhhh---hhhhhcccceeEEEcC-eEEEecCCccCcc-cCHHhhhhccCCc--ccCC
Q 001901 776 DINALFGFRIECIERMGERDGIWAWHR---INRLFNWLPLAALIEK-KIICMHGGIGRSI-NHVEQIENLQRPI--TMEA 848 (998)
Q Consensus 776 ~~~~~~gf~~e~~~~~g~~~~~~~~~~---~~~~f~~LP~aa~i~~-~il~vHgGi~~~~-~~~~~i~~i~rp~--~~~~ 848 (998)
.++..+|+.++|...++.. ..|.. +.++|+.||+.+++++ .++|.|+++++.+ ..+++++.+.|.. .+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~---~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 78 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEE---LEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPH 78 (155)
T ss_pred hhhhhhchhHHhhhhcCCc---eeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCC
Confidence 4566788998988877653 34655 9999999999999988 9999999999976 6778888877765 3333
Q ss_pred CCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCcEEEEcccccccceEEecCCeEEEEecccccc
Q 001901 849 GSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYC 928 (998)
Q Consensus 849 ~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~ 928 (998)
.+ ...+.+|+++... ....|.+..||.+. .| ++....|+..+..+.|.|+|+.+..++...+.+..+|+|++++||
T Consensus 79 ~g-~~~~~~~~~~~~~-~~~~w~~~~~g~~~-~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 79 AG-HTHDLLWSDPDGG-DRRIWNPGPRGVPR-DG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred cc-ccccccCCCCCCC-cccccccCCCCCCc-cc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 33 5666699998752 25779999999983 34 788889998898888999999999999988776899999999997
Q ss_pred C
Q 001901 929 G 929 (998)
Q Consensus 929 ~ 929 (998)
.
T Consensus 155 ~ 155 (155)
T COG0639 155 Y 155 (155)
T ss_pred C
Confidence 3
No 64
>PLN02772 guanylate kinase
Probab=98.74 E-value=5.4e-08 Score=110.00 Aligned_cols=93 Identities=17% Similarity=0.312 Sum_probs=79.0
Q ss_pred ccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEE
Q 001901 84 KKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWS 163 (998)
Q Consensus 84 ~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~ 163 (998)
+.|-.+.|+..||++.+ ++++|||||.+.... ..+++|+||..+.+|.
T Consensus 17 ~~~~~~~~~~~~tav~i------------gdk~yv~GG~~d~~~--------------------~~~~v~i~D~~t~~W~ 64 (398)
T PLN02772 17 TNGFGVKPKNRETSVTI------------GDKTYVIGGNHEGNT--------------------LSIGVQILDKITNNWV 64 (398)
T ss_pred ccCccCCCCCcceeEEE------------CCEEEEEcccCCCcc--------------------ccceEEEEECCCCcEe
Confidence 34456779999999999 899999999876432 6789999999999999
Q ss_pred EecCCCCCCCCccceEEEEeCC-EEEEEeCCCCCCCCcccEEEEEcCCC
Q 001901 164 RITPFGEPPTPRAAHVATAVGT-MVVIQGGIGPAGLSAEDLHVLDLTQQ 211 (998)
Q Consensus 164 ~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~~~dv~~~Dl~t~ 211 (998)
.....|.+|.||.+|+++++++ +|+|+++... ..+++|.+.+.+.
T Consensus 65 ~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~---~~~~~w~l~~~t~ 110 (398)
T PLN02772 65 SPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA---PDDSIWFLEVDTP 110 (398)
T ss_pred cccccCCCCCCCCcceEEEECCceEEEEeCCCC---CccceEEEEcCCH
Confidence 9999999999999999999965 9999987543 3488999998873
No 65
>PF13964 Kelch_6: Kelch motif
Probab=98.73 E-value=2.8e-08 Score=80.03 Aligned_cols=50 Identities=42% Similarity=0.823 Sum_probs=44.3
Q ss_pred CCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEecCCCC
Q 001901 91 PRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGE 170 (998)
Q Consensus 91 pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~g~ 170 (998)
||++|+++++ +++||||||...... .++++++||+.+++|++++++
T Consensus 1 pR~~~s~v~~------------~~~iyv~GG~~~~~~--------------------~~~~v~~yd~~t~~W~~~~~m-- 46 (50)
T PF13964_consen 1 PRYGHSAVVV------------GGKIYVFGGYDNSGK--------------------YSNDVERYDPETNTWEQLPPM-- 46 (50)
T ss_pred CCccCEEEEE------------CCEEEEECCCCCCCC--------------------ccccEEEEcCCCCcEEECCCC--
Confidence 7999999999 799999999987421 789999999999999999887
Q ss_pred CCCCc
Q 001901 171 PPTPR 175 (998)
Q Consensus 171 ~P~pR 175 (998)
|.||
T Consensus 47 -p~pR 50 (50)
T PF13964_consen 47 -PTPR 50 (50)
T ss_pred -CCCC
Confidence 7776
No 66
>PLN02772 guanylate kinase
Probab=98.71 E-value=6.1e-08 Score=109.58 Aligned_cols=89 Identities=18% Similarity=0.412 Sum_probs=78.8
Q ss_pred CCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCC
Q 001901 172 PTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKR 251 (998)
Q Consensus 172 P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~ 251 (998)
+.|+.+|+++++++++|||||.++.+...+++|+||..+.+ |..+.+.|..|.+|.+|+++++++.+|+|+++..+..
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~--W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~ 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNN--WVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCc--EecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc
Confidence 56899999999999999999988766577999999999975 9999999999999999999999888999998765543
Q ss_pred CcccEEEEECCCC
Q 001901 252 PLADVWALDTAAK 264 (998)
Q Consensus 252 ~lndv~~yD~~s~ 264 (998)
.++|.+.+.+.
T Consensus 100 --~~~w~l~~~t~ 110 (398)
T PLN02772 100 --DSIWFLEVDTP 110 (398)
T ss_pred --cceEEEEcCCH
Confidence 78999888764
No 67
>PF13964 Kelch_6: Kelch motif
Probab=98.71 E-value=3e-08 Score=79.81 Aligned_cols=50 Identities=32% Similarity=0.615 Sum_probs=45.7
Q ss_pred CccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCC
Q 001901 174 PRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (998)
Q Consensus 174 pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R 228 (998)
||.+|++++++++|||+||........+++++||+.+++ |+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNT--WEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCc--EEECC---CCCCCC
Confidence 699999999999999999997767788999999999985 99998 899887
No 68
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.66 E-value=5.5e-08 Score=77.96 Aligned_cols=49 Identities=43% Similarity=0.814 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEecCCCCCCCCccceEEEEe
Q 001901 113 GPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV 183 (998)
Q Consensus 113 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~ 183 (998)
|++||||||....... .++|+|+||+.+++|+++ ++.|.||.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~-------------------~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGT-------------------RLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCC-------------------EecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 4789999999842211 889999999999999999 446999999999874
No 69
>PRK09453 phosphodiesterase; Provisional
Probab=98.61 E-value=1.3e-07 Score=97.96 Aligned_cols=68 Identities=19% Similarity=0.342 Sum_probs=53.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCC--------hHHHHHHHHHhhhcCCCcEEEee
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH--------SLETITLLLALKVEYPNNVHLIR 769 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~--------s~evl~ll~~lk~~~p~~v~llr 769 (998)
+++.|++|+||++..|.++++.+.....+ .++++||++|+|+. ..+++.+|..+ ...+++++
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d------~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~ 70 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGAD------WLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVR 70 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCC------EEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEc
Confidence 36899999999999999998877433333 79999999999873 45677666554 24699999
Q ss_pred cCcccc
Q 001901 770 GNHEAA 775 (998)
Q Consensus 770 GNHE~~ 775 (998)
||||..
T Consensus 71 GNhD~~ 76 (182)
T PRK09453 71 GNCDSE 76 (182)
T ss_pred cCCcch
Confidence 999974
No 70
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.55 E-value=1.2e-06 Score=87.86 Aligned_cols=61 Identities=30% Similarity=0.486 Sum_probs=44.7
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccc
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 776 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 776 (998)
++|.++||+|++...+.++++.+.- .+ .++++||++|+ .+++.++..+ .+++++||||...
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~~~--~d------~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYINE--PD------FVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHHTT--ES------EEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTH
T ss_pred CEEEEEeCCCCChhHHHHHHHHhcC--CC------EEEECCCchhH----HHHHHHHhcC------CEEEEeCCccccc
Confidence 3689999999999999999999821 22 68899999993 7777777555 6999999999644
No 71
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.51 E-value=3.3e-07 Score=92.23 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=47.8
Q ss_pred CeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCcccc
Q 001901 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 775 (998)
Q Consensus 699 ~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 775 (998)
++.+++|+||++..+.++++.+.. .+ .++++||+++++.... ++. ...+++++||||..
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d------~ii~~GD~~~~~~~~~--------~~~--~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VD------LIIHAGDVLYPGPLNE--------LEL--KAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CC------EEEECCccccccccch--------hhc--CCcEEEEeCCCCCc
Confidence 478999999999999999998754 22 7999999999998754 222 24699999999974
No 72
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.47 E-value=1.5e-07 Score=75.42 Aligned_cols=47 Identities=28% Similarity=0.678 Sum_probs=30.8
Q ss_pred CCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEecCC
Q 001901 91 PRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPF 168 (998)
Q Consensus 91 pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~ 168 (998)
||++|+++.+. +++||||||...... .++|+|+||+.+++|++++++
T Consensus 1 pR~~h~~~~~~-----------~~~i~v~GG~~~~~~--------------------~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIG-----------DNSIYVFGGRDSSGS--------------------PLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE------------TTEEEEE--EEE-TE--------------------E---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEe-----------CCeEEEECCCCCCCc--------------------ccCCEEEEECCCCEEEECCCC
Confidence 79999999984 479999999987542 899999999999999999554
No 73
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.45 E-value=4.4e-07 Score=72.72 Aligned_cols=47 Identities=34% Similarity=0.620 Sum_probs=40.1
Q ss_pred CcceeEEEEECCEEEEEccc-CCCCCccccCCeEEEEECCCCeEEEcccC
Q 001901 333 PRYQHAAVFVNARLHVSGGA-LGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (998)
Q Consensus 333 pR~~hsav~~~~~L~V~GG~-~~~~~~~~~~~dv~vyD~~t~~W~~v~~~ 381 (998)
||++|++++++++|||+||+ .... ....+++++||+++.+|+.+..+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~--~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNG--GSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCC--CcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 2221 24589999999999999998876
No 74
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.45 E-value=4.2e-06 Score=84.62 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=46.9
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCC-CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccc
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSP-STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~-~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 774 (998)
+++.|++|+||++..+..+++..... ..+ .++++||++ +.+++.+|..+. ..++.++||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVD------LVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCC------EEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCc
Confidence 36899999999998777666655433 223 789999999 467777776542 359999999998
No 75
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.44 E-value=3.7e-07 Score=73.13 Aligned_cols=48 Identities=33% Similarity=0.704 Sum_probs=41.9
Q ss_pred CCEEEEEeCCC-CCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEE
Q 001901 184 GTMVVIQGGIG-PAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV 236 (998)
Q Consensus 184 ~~~lyVfGG~~-~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~ 236 (998)
+++||||||.+ .....++|+|+||+.+. +|+++ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~--~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTN--TWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCC--EEEEC---CCCCCCccceEEEEC
Confidence 57999999998 46778899999999987 59988 589999999999864
No 76
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.42 E-value=2.2e-07 Score=74.34 Aligned_cols=46 Identities=35% Similarity=0.850 Sum_probs=30.6
Q ss_pred CCcccEEEEECCcEEEEEcCCCCC-CCcccEEEEECCCCCceEEEcccC
Q 001901 227 PRYGHVMALVGQRYLMAIGGNDGK-RPLADVWALDTAAKPYEWRKLEPE 274 (998)
Q Consensus 227 ~R~~hs~~~~~~~~Lyv~GG~~g~-~~lndv~~yD~~s~~~~W~~v~~~ 274 (998)
||++|+++.++++.||||||.+.. ..++|+|+||+.++ +|+++.++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECCCC
Confidence 699999999975699999999886 68999999999999 99999443
No 77
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.40 E-value=1.7e-06 Score=85.06 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=77.5
Q ss_pred CeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChH--HHHHHHHHhhhcCCCcEEEeecCccccc
Q 001901 699 PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL--ETITLLLALKVEYPNNVHLIRGNHEAAD 776 (998)
Q Consensus 699 ~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~--evl~ll~~lk~~~p~~v~llrGNHE~~~ 776 (998)
++.+++|+||++. .+ .....+ .+|++||++++|...- +++.++..++ .| .+++++||||...
T Consensus 1 ~i~~isD~H~~~~----~~---~~~~~D------~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~~ 64 (135)
T cd07379 1 RFVCISDTHSRHR----TI---SIPDGD------VLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLTL 64 (135)
T ss_pred CEEEEeCCCCCCC----cC---cCCCCC------EEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCcC
Confidence 4789999999987 11 111222 6888999999986532 2444444432 22 3678999999631
Q ss_pred hhhhcCChHHHHHHhCCCcchhhhhhhhhhhcccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceecc
Q 001901 777 INALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDL 856 (998)
Q Consensus 777 ~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dl 856 (998)
. .-+.+++++||.+.... +.
T Consensus 65 ~-------------------------------------~~~~~ilv~H~~p~~~~-----------------------~~ 84 (135)
T cd07379 65 D-------------------------------------PEDTDILVTHGPPYGHL-----------------------DL 84 (135)
T ss_pred C-------------------------------------CCCCEEEEECCCCCcCc-----------------------cc
Confidence 1 11347899999642210 00
Q ss_pred ccCCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCcEEEEcccccccceE
Q 001901 857 LWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 911 (998)
Q Consensus 857 LWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 911 (998)
++ + . ..+|.+.+.+++++.+.+++|-||.-.+.|++
T Consensus 85 ~~--~----------------~-~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 85 VS--S----------------G-QRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred cc--c----------------C-cccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 00 0 0 23677889999999999999999999888887
No 78
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.34 E-value=1.2e-06 Score=70.11 Aligned_cols=46 Identities=37% Similarity=0.862 Sum_probs=41.0
Q ss_pred CCcccEEEEECCcEEEEEcCC---CCCCCcccEEEEECCCCCceEEEcccCC
Q 001901 227 PRYGHVMALVGQRYLMAIGGN---DGKRPLADVWALDTAAKPYEWRKLEPEG 275 (998)
Q Consensus 227 ~R~~hs~~~~~~~~Lyv~GG~---~g~~~lndv~~yD~~s~~~~W~~v~~~~ 275 (998)
+|++|+++++++ +||||||. +.....+++++||+.+. +|+.+.+++
T Consensus 1 ~r~~hs~~~~~~-kiyv~GG~~~~~~~~~~~~v~~~d~~t~--~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDG-KIYVFGGYGTDNGGSSSNDVWVFDTETN--QWTELSPMG 49 (49)
T ss_pred CccceEEEEECC-EEEEECCcccCCCCcccceeEEEECCCC--EEeecCCCC
Confidence 699999999998 89999999 55667999999999999 999998753
No 79
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.32 E-value=2e-06 Score=91.78 Aligned_cols=113 Identities=23% Similarity=0.239 Sum_probs=72.9
Q ss_pred CeEEEecCCCCHHHHH-HHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccch
Q 001901 699 PIKIFGDLHGQFGDLM-RLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (998)
Q Consensus 699 ~i~vvGDiHG~~~dL~-~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 777 (998)
+|.++|||||++.... +.++..+ + + .+||+||+++. +.+++..|..+ +..+++++||||....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~~--p-D------~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLLQ--P-D------LVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYD 65 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhccC--C-C------EEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCccccc
Confidence 5899999999987642 3343332 1 2 69999999864 56777776654 2358999999997543
Q ss_pred hhh---cC-----------------------------------------C-hHHHHHHhCCCcchhhhhhhhhhhcccce
Q 001901 778 NAL---FG-----------------------------------------F-RIECIERMGERDGIWAWHRINRLFNWLPL 812 (998)
Q Consensus 778 ~~~---~g-----------------------------------------f-~~e~~~~~g~~~~~~~~~~~~~~f~~LP~ 812 (998)
... +. + ..++..+|+- ...++.+..+++.++.
T Consensus 66 ~~~~~k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi---~s~~eA~~~ive~~~~ 142 (238)
T cd07397 66 ATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGV---ISLEESAQRIIAAAKK 142 (238)
T ss_pred ccccchHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCC---CCHHHHHHHHHHHhhh
Confidence 200 00 0 1245555652 2455677777888864
Q ss_pred eEEEcCeEEEecCCccCc
Q 001901 813 AALIEKKIICMHGGIGRS 830 (998)
Q Consensus 813 aa~i~~~il~vHgGi~~~ 830 (998)
+......||+.|+++.-.
T Consensus 143 ~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 143 APPDLPLILLAHNGPSGL 160 (238)
T ss_pred cCCCCCeEEEeCcCCcCC
Confidence 434445799999998643
No 80
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.30 E-value=5.2e-06 Score=88.43 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=55.5
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCcccc
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 775 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 775 (998)
.+|.+++||||++..|.++++.+.....+ .+|++||++++|...-++..++-.|... +..+++++||||..
T Consensus 5 ~kIl~iSDiHgn~~~le~l~~~~~~~~~D------~vv~~GDl~~~g~~~~~~~~~l~~l~~l-~~pv~~V~GNhD~~ 75 (224)
T cd07388 5 RYVLATSNPKGDLEALEKLVGLAPETGAD------AIVLIGNLLPKAAKSEDYAAFFRILGEA-HLPTFYVPGPQDAP 75 (224)
T ss_pred eEEEEEEecCCCHHHHHHHHHHHhhcCCC------EEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEcCCCChH
Confidence 46999999999999999999876322223 6999999999997666676666666432 34699999999975
No 81
>PF13854 Kelch_5: Kelch motif
Probab=98.29 E-value=1.3e-06 Score=67.47 Aligned_cols=40 Identities=40% Similarity=0.578 Sum_probs=36.2
Q ss_pred CCCCccceEEEEeCCEEEEEeCCC-CCCCCcccEEEEEcCC
Q 001901 171 PPTPRAAHVATAVGTMVVIQGGIG-PAGLSAEDLHVLDLTQ 210 (998)
Q Consensus 171 ~P~pR~~hsa~~~~~~lyVfGG~~-~~~~~~~dv~~~Dl~t 210 (998)
+|.||.+|++++++++||||||.. ......+|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 489999999999999999999998 3677889999999876
No 82
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.27 E-value=1.1e-06 Score=69.58 Aligned_cols=44 Identities=25% Similarity=0.532 Sum_probs=40.2
Q ss_pred CccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEee
Q 001901 174 PRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVV 219 (998)
Q Consensus 174 pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~ 219 (998)
||.+|++++++++|||+||.......++++++||+.++ +|..++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETN--TWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTT--EEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCC--EEEEcC
Confidence 69999999999999999999887788999999999998 599997
No 83
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.25 E-value=1.1e-06 Score=69.56 Aligned_cols=45 Identities=38% Similarity=0.753 Sum_probs=41.0
Q ss_pred CCcccEEEEECCcEEEEEcCCCC-CCCcccEEEEECCCCCceEEEcccC
Q 001901 227 PRYGHVMALVGQRYLMAIGGNDG-KRPLADVWALDTAAKPYEWRKLEPE 274 (998)
Q Consensus 227 ~R~~hs~~~~~~~~Lyv~GG~~g-~~~lndv~~yD~~s~~~~W~~v~~~ 274 (998)
||++|+++++++ +|||+||.++ ...++++++||+.++ +|+.++++
T Consensus 1 pR~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGN-KIYVIGGYDGNNQPTNSVEVYDPETN--TWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETT-EEEEEEEBESTSSBEEEEEEEETTTT--EEEEEEEE
T ss_pred CCccCEEEEECC-EEEEEeeecccCceeeeEEEEeCCCC--EEEEcCCC
Confidence 689999999998 8999999988 778999999999999 99998765
No 84
>PF13854 Kelch_5: Kelch motif
Probab=98.23 E-value=2e-06 Score=66.51 Aligned_cols=39 Identities=36% Similarity=0.701 Sum_probs=35.4
Q ss_pred CCCCCcccEEEEECCcEEEEEcCCCC--CCCcccEEEEECCC
Q 001901 224 GPGPRYGHVMALVGQRYLMAIGGNDG--KRPLADVWALDTAA 263 (998)
Q Consensus 224 ~P~~R~~hs~~~~~~~~Lyv~GG~~g--~~~lndv~~yD~~s 263 (998)
+|.+|++|+++++++ +||||||.++ ...++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~-~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGN-NIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECC-EEEEEcCccCCCCCEECcEEEEECCC
Confidence 488999999999997 8999999994 77799999999976
No 85
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.17 E-value=1.5e-05 Score=76.32 Aligned_cols=117 Identities=23% Similarity=0.365 Sum_probs=82.0
Q ss_pred EEEecCCCCHHHHHHHH--HHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchh
Q 001901 701 KIFGDLHGQFGDLMRLF--DEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADIN 778 (998)
Q Consensus 701 ~vvGDiHG~~~dL~~il--~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 778 (998)
+++||+|+......... ........+ .+|++||+++.+....+........+......++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~------~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPD------FVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCC------EEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----
Confidence 47999999998888764 221111112 68999999999998877766544444455678999999999
Q ss_pred hhcCChHHHHHHhCCCcchhhhhhhhhhhcccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceecccc
Q 001901 779 ALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLW 858 (998)
Q Consensus 779 ~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLW 858 (998)
|+++|..+.+..... ..
T Consensus 70 -----------------------------------------i~~~H~~~~~~~~~~--------------~~-------- 86 (131)
T cd00838 70 -----------------------------------------ILLTHGPPYDPLDEL--------------SP-------- 86 (131)
T ss_pred -----------------------------------------EEEeccCCCCCchhh--------------cc--------
Confidence 889999886541100 00
Q ss_pred CCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCcEEEEcccccccceE
Q 001901 859 SDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 911 (998)
Q Consensus 859 sDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 911 (998)
. .......+...+...+..++|-||.-....+.
T Consensus 87 --------~------------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 87 --------D------------EDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred --------c------------chhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 0 00155678888999999999999997765554
No 86
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.07 E-value=0.00087 Score=71.47 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=93.8
Q ss_pred ccCCCCCCCcCceEEEEccCCcCCCCCccCCEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCc--
Q 001901 84 KKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNK-- 161 (998)
Q Consensus 84 ~~g~~P~pR~ght~t~v~~~~~~~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~-- 161 (998)
...-.|+-|+-+.+..-....+. -...++.||.+.+.. +.+.+|++...+..
T Consensus 15 dSCYLPPLR~PAv~~~~~~~~~~------~~~YlIHGGrTPNNE--------------------lS~~LY~ls~~s~~cN 68 (337)
T PF03089_consen 15 DSCYLPPLRCPAVCHLSDPSDGE------PEQYLIHGGRTPNNE--------------------LSSSLYILSVDSRGCN 68 (337)
T ss_pred CcccCCCCCCccEeeecCCCCCC------eeeEEecCCcCCCcc--------------------cccceEEEEeecCCCC
Confidence 34456777777666663332221 346777888887664 77888988776543
Q ss_pred ------EEEecCCCCCCCCccceEEEEe---C-CEEEEEeCCCC--CC-----------CCcccEEEEEcCCCCCceEEe
Q 001901 162 ------WSRITPFGEPPTPRAAHVATAV---G-TMVVIQGGIGP--AG-----------LSAEDLHVLDLTQQRPRWHRV 218 (998)
Q Consensus 162 ------W~~l~~~g~~P~pR~~hsa~~~---~-~~lyVfGG~~~--~~-----------~~~~dv~~~Dl~t~t~~W~~l 218 (998)
...-.-.|+.|.+|++|++.++ | ..+++|||..- .+ .+.-.|+++|+.-.-..=..+
T Consensus 69 kK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l 148 (337)
T PF03089_consen 69 KKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL 148 (337)
T ss_pred ceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc
Confidence 3344556899999999999888 3 38899999641 11 123567788877431011223
Q ss_pred eecCCCCCCCcccEEEEECCcEEEEEcCCCC--CCCcccEEEEE
Q 001901 219 VVQGPGPGPRYGHVMALVGQRYLMAIGGNDG--KRPLADVWALD 260 (998)
Q Consensus 219 ~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g--~~~lndv~~yD 260 (998)
+ .+.-+...|.+..-++ .+|++||..- +..-..++++.
T Consensus 149 p---El~dG~SFHvslar~D-~VYilGGHsl~sd~Rpp~l~rlk 188 (337)
T PF03089_consen 149 P---ELQDGQSFHVSLARND-CVYILGGHSLESDSRPPRLYRLK 188 (337)
T ss_pred h---hhcCCeEEEEEEecCc-eEEEEccEEccCCCCCCcEEEEE
Confidence 2 5556777888877777 8999999742 23334555543
No 87
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.97 E-value=0.00025 Score=76.17 Aligned_cols=154 Identities=14% Similarity=0.231 Sum_probs=99.1
Q ss_pred EEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCC--CCceEEEcccCCCCCCC
Q 001901 203 LHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAA--KPYEWRKLEPEGEGPPP 280 (998)
Q Consensus 203 v~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s--~~~~W~~v~~~~~~P~~ 280 (998)
-.+||+.+++ ++.+.+ +..-+..+.+.+.++.+++.||.... ...+-.|++.. ..-.|...... .-.+
T Consensus 48 s~~yD~~tn~--~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~--m~~~ 117 (243)
T PF07250_consen 48 SVEYDPNTNT--FRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPND--MQSG 117 (243)
T ss_pred EEEEecCCCc--EEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECccc--ccCC
Confidence 3478998874 776642 33344444456667789999998542 34677788765 11278877542 1234
Q ss_pred ccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCC---CCeEEEEECC---CCCCCCcceeEEEEECCEEEEEcccCC
Q 001901 281 CMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHR---DGRWEWAIAP---GVSPSPRYQHAAVFVNARLHVSGGALG 354 (998)
Q Consensus 281 r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~---~~~W~w~~~~---g~~P~pR~~hsav~~~~~L~V~GG~~~ 354 (998)
|-+.++....+|+++|+||.. +..+.|.+.. ...+.|.... ...+...|-+..+.-+|+||+++..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~------~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-- 189 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSN------NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-- 189 (243)
T ss_pred CccccceECCCCCEEEEeCcC------CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--
Confidence 888899999999999999986 3345554542 2223332221 1123445556666668999999863
Q ss_pred CCCccccCCeEEEEECCCCeE-EEcccCcC
Q 001901 355 GGRMVEDSSSVAVLDTAAGVW-CDTKSVVT 383 (998)
Q Consensus 355 ~~~~~~~~~dv~vyD~~t~~W-~~v~~~~~ 383 (998)
+-.+||..++++ +.++.++.
T Consensus 190 ---------~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 190 ---------GSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred ---------CcEEEeCCCCeEEeeCCCCCC
Confidence 356789999987 77887744
No 88
>smart00612 Kelch Kelch domain.
Probab=97.96 E-value=1.1e-05 Score=63.35 Aligned_cols=47 Identities=30% Similarity=0.599 Sum_probs=40.0
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCC
Q 001901 115 RLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGT 185 (998)
Q Consensus 115 ~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~ 185 (998)
+||++||..... .++++++||+.+++|+.++++ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~---------------------~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ---------------------RLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc---------------------eeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 489999986422 678999999999999999876 89999999988764
No 89
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.89 E-value=0.0041 Score=66.47 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=72.7
Q ss_pred EEEEEeCCCCCCCCcccEEEEEcCCCC------CceEEeeecCCCCCCCcccEEEEEC---CcEEEEEcCCCC-------
Q 001901 186 MVVIQGGIGPAGLSAEDLHVLDLTQQR------PRWHRVVVQGPGPGPRYGHVMALVG---QRYLMAIGGNDG------- 249 (998)
Q Consensus 186 ~lyVfGG~~~~~~~~~dv~~~Dl~t~t------~~W~~l~~~g~~P~~R~~hs~~~~~---~~~Lyv~GG~~g------- 249 (998)
.-+|-||.+++....+.+|++.+.+.. ....+-...|+.|.+||+|++-++. ....++|||+.-
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 567779999998888999999887632 1223333468999999999998773 336888999831
Q ss_pred -------CCCcccEEEEECCCCCceEEE--cccCCCCCCCccceEEEEEeCCEEEEEeccC
Q 001901 250 -------KRPLADVWALDTAAKPYEWRK--LEPEGEGPPPCMYATASARSDGLLLLCGGRD 301 (998)
Q Consensus 250 -------~~~lndv~~yD~~s~~~~W~~--v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~ 301 (998)
-.+.-.|+.+|++-. .++. ++.... ....+.+...++.+|+.||+.
T Consensus 120 TenWNsVvDC~P~VfLiDleFG--C~tah~lpEl~d----G~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFG--CCTAHTLPELQD----GQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred hhhcceeccCCCeEEEEecccc--ccccccchhhcC----CeEEEEEEecCceEEEEccEE
Confidence 112345777777654 3322 122211 233444556699999999974
No 90
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.88 E-value=0.0011 Score=71.20 Aligned_cols=149 Identities=14% Similarity=0.171 Sum_probs=93.9
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCCCccceEEEEe-CCEEEEEeCCCCCCCCcccEEEEEcCC--CCCceEEeeecCCCC
Q 001901 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQ--QRPRWHRVVVQGPGP 225 (998)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~~~dv~~~Dl~t--~t~~W~~l~~~g~~P 225 (998)
...-..||+.+++++.+... .--.+.+.+.+ ++++++.||.... ...+..|+... .+..|.+.. ..|-
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~--~~m~ 115 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP--NDMQ 115 (243)
T ss_pred eEEEEEEecCCCcEEeccCC----CCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc--cccc
Confidence 55667899999999988754 22222222333 5599999998552 24577788765 112588775 2489
Q ss_pred CCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCC---CCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCC
Q 001901 226 GPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAA---KPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (998)
Q Consensus 226 ~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s---~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~ 302 (998)
.+|+..+++.+.++.++|+||.... ..+.+.... ....|..+......-+.-.+-...+..+|+||+|+..
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-- 189 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNNP----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-- 189 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCCC----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--
Confidence 9999999999999999999998732 223333211 1134444432221112234556667779999999874
Q ss_pred CCCCcccEEEEecCCC
Q 001901 303 SSVPLASAYGLAKHRD 318 (998)
Q Consensus 303 ~~~~~~dv~~~~~~~~ 318 (998)
+.+.||...+
T Consensus 190 ------~s~i~d~~~n 199 (243)
T PF07250_consen 190 ------GSIIYDYKTN 199 (243)
T ss_pred ------CcEEEeCCCC
Confidence 3445566655
No 91
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=97.87 E-value=0.00039 Score=71.84 Aligned_cols=58 Identities=24% Similarity=0.427 Sum_probs=42.2
Q ss_pred CeEEEecCC-CCHH-----HHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCc
Q 001901 699 PIKIFGDLH-GQFG-----DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 772 (998)
Q Consensus 699 ~i~vvGDiH-G~~~-----dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 772 (998)
.|.||+|+| |.-. .+.++|+.. ..+ .++.+||+++ .+++.+|..++ ..++.++|||
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~---~~d------~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~ 62 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPG---KIQ------HVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDF 62 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccC---CCC------EEEECCCCCC-----HHHHHHHHhhC----CceEEEECCC
Confidence 378999999 6543 356666541 122 6899999987 77887776652 2599999999
Q ss_pred cc
Q 001901 773 EA 774 (998)
Q Consensus 773 E~ 774 (998)
|.
T Consensus 63 D~ 64 (178)
T cd07394 63 DE 64 (178)
T ss_pred Cc
Confidence 97
No 92
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.87 E-value=0.00027 Score=73.09 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=44.2
Q ss_pred eEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCCh-HHHHHHHHHhhhcCCCcEEEeecCccccc
Q 001901 700 IKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-LETITLLLALKVEYPNNVHLIRGNHEAAD 776 (998)
Q Consensus 700 i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-~evl~ll~~lk~~~p~~v~llrGNHE~~~ 776 (998)
|.+++||||++..|.+ ........+ -+|+.||++++|... .+.+..|.. .+..++.++||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D------~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEAD------AVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCC------EEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHH
Confidence 5789999999998876 222111112 688999999999763 333333332 2456999999999754
No 93
>smart00612 Kelch Kelch domain.
Probab=97.85 E-value=2.2e-05 Score=61.51 Aligned_cols=47 Identities=32% Similarity=0.490 Sum_probs=39.1
Q ss_pred EEEEEcccCCCCCccccCCeEEEEECCCCeEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEECC
Q 001901 345 RLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGD 416 (998)
Q Consensus 345 ~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~ 416 (998)
+|||+||.... ...+++++||+.+++|+.++.+ +.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~----~~~~~v~~yd~~~~~W~~~~~~---------------------~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG----QRLKSVEVYDPETNKWTPLPSM---------------------PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC----ceeeeEEEECCCCCeEccCCCC---------------------CCccccceEEEeCC
Confidence 48999998653 2378899999999999998877 67999999988764
No 94
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.70 E-value=7.7e-06 Score=93.08 Aligned_cols=238 Identities=13% Similarity=0.023 Sum_probs=164.2
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCCeeeecC----CeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCC
Q 001901 670 FLDCNEIADLCDSAERIFSSEPSVLQLKA----PIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQ 745 (998)
Q Consensus 670 ~~~~~~i~~l~~~~~~~~~~ep~~l~~~~----~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~ 745 (998)
.|...++..+++.+.+++..+|+...+.+ -.+.++|.||.+.|+.+.++.- |.-. .-|++-|++|+++.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~-----K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYI-----KAYVRRGTAVMALG 86 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhh-----heeeeccHHHHhHH
Confidence 46778899999999999999998887642 4788999999999999988764 2211 15999999999999
Q ss_pred ChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhhcccceeEEEcCeEEEecC
Q 001901 746 HSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHG 825 (998)
Q Consensus 746 ~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~~~il~vHg 825 (998)
...+.+..|...+...|+...+.|++||+..+-..++|..+....+++. +..++..+...+-. |++..+.+.++=-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~-~s~~~~~~~~~~~~-~i~~~y~g~~le~~- 163 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDK-KSVVEMKIDEEDMD-LIESDYSGPVLEDH- 163 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCC-cccccccccccccc-ccccccCCcccccc-
Confidence 9999999999999999999999999999999999999998888777654 23333333333322 14445554333333
Q ss_pred CccCcccCHHhhhh-----------------------------ccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCC
Q 001901 826 GIGRSINHVEQIEN-----------------------------LQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARG 876 (998)
Q Consensus 826 Gi~~~~~~~~~i~~-----------------------------i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg 876 (998)
-+ +++.+.. +.-++++ ..-.|.+|+++... -.-+-...++
T Consensus 164 kv-----t~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~----~~~~d~~~sv~gd~--hGqfydl~ni 232 (476)
T KOG0376|consen 164 KV-----TLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEI----SVPGDVKISVCGDT--HGQFYDLLNI 232 (476)
T ss_pred hh-----hHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEe----ecCCCceEEecCCc--cccccchhhh
Confidence 11 1111111 1112221 14467789888752 2233344555
Q ss_pred CCceeeCHHHHHHHHHHcCCcEEEEcccccc-----------c-ceEEec---CCeEEEEeccccccC
Q 001901 877 PGLVTFGPDRVMEFCNNNDLQLIVRAHECVM-----------D-GFERFA---QGHLITLFSATNYCG 929 (998)
Q Consensus 877 ~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~-----------~-G~~~~~---~~~~iTvfSa~~y~~ 929 (998)
.+ ...+++....||.+.++.-+++.|.-+. + +|...+ .+.+++||+++.+|-
T Consensus 233 f~-l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 233 FE-LNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred Hh-hcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 55 3467778888999999999998886542 1 121111 235899999998874
No 95
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.62 E-value=0.0005 Score=67.12 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=40.0
Q ss_pred EEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCcc
Q 001901 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHE 773 (998)
Q Consensus 701 ~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 773 (998)
.|++|.||....+.+++... ...+ .++++||+. .+++.++..++ ...++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~~--~~~d------~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVRL--EGVD------LILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD 56 (129)
T ss_pred CeeccccCccccchHHHhhC--CCCC------EEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence 38999999988887777652 2222 799999984 34566665542 225899999999
No 96
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.59 E-value=0.013 Score=63.04 Aligned_cols=206 Identities=8% Similarity=0.069 Sum_probs=113.0
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccce-EEEEe----CC-EEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCC
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAH-VATAV----GT-MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~h-sa~~~----~~-~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~ 223 (998)
..++++||.|++|..++....+......+ ....+ +. +|+.+...... .....+++|++.++. |+.+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~--Wr~~~~~-- 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNS--WRTIECS-- 88 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCC--ccccccC--
Confidence 46899999999999997531100001111 11112 12 77777543211 123578899999874 9988622
Q ss_pred CCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEE-cccCCCCCCCccceEEEEEeCCEEEEEeccCC
Q 001901 224 GPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRK-LEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (998)
Q Consensus 224 ~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~-v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~ 302 (998)
.+........+.+++ .||-+.-.........+..||+.+. +|.. +... ...............+|+|.++.....
T Consensus 89 ~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~IvsFDl~~E--~f~~~i~~P-~~~~~~~~~~~L~~~~G~L~~v~~~~~ 164 (230)
T TIGR01640 89 PPHHPLKSRGVCING-VLYYLAYTLKTNPDYFIVSFDVSSE--RFKEFIPLP-CGNSDSVDYLSLINYKGKLAVLKQKKD 164 (230)
T ss_pred CCCccccCCeEEECC-EEEEEEEECCCCCcEEEEEEEcccc--eEeeeeecC-ccccccccceEEEEECCEEEEEEecCC
Confidence 122122222556666 6877764332121226999999999 8885 4321 111101123344556788888765422
Q ss_pred CCCCcccEEEEecCCCCeEEEEECCCCCCCCcc----eeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCC
Q 001901 303 SSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRY----QHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG 373 (998)
Q Consensus 303 ~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~----~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~ 373 (998)
. ..-++|.+.......|+..-.-+.++.+.. ....+..+++|++.... .. ..-+.+||+.++
T Consensus 165 ~--~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~------~~~~~~y~~~~~ 230 (230)
T TIGR01640 165 T--NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-EN------PFYIFYYNVGEN 230 (230)
T ss_pred C--CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CC------ceEEEEEeccCC
Confidence 1 236899987665567875433333222222 13445567888877542 10 123888998764
No 97
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.52 E-value=0.00035 Score=75.81 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=46.8
Q ss_pred CCeEEEecCCCCH------HHHHHHHHHcCCCCCCCCccceeEEEeccccCC--C-----CChHHHHHHHHHhhhcCCCc
Q 001901 698 APIKIFGDLHGQF------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDR--G-----QHSLETITLLLALKVEYPNN 764 (998)
Q Consensus 698 ~~i~vvGDiHG~~------~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDR--G-----~~s~evl~ll~~lk~~~p~~ 764 (998)
+++++++|+|... ..|.++|+.... ..+ .++++||++|. | +...+++.+|..|+.. +-.
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~-~~d------~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~ 72 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEAR-QAD------ALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVP 72 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhc-cCC------EEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCe
Confidence 3689999999542 235555543211 112 68999999985 2 2346777777777643 246
Q ss_pred EEEeecCcccc
Q 001901 765 VHLIRGNHEAA 775 (998)
Q Consensus 765 v~llrGNHE~~ 775 (998)
|++++||||..
T Consensus 73 v~~v~GNHD~~ 83 (241)
T PRK05340 73 CYFMHGNRDFL 83 (241)
T ss_pred EEEEeCCCchh
Confidence 99999999973
No 98
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.40 E-value=0.00013 Score=74.27 Aligned_cols=67 Identities=27% Similarity=0.236 Sum_probs=45.3
Q ss_pred eEEEecCCCCHHHHHHHHHH-cCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCcccc
Q 001901 700 IKIFGDLHGQFGDLMRLFDE-YGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAA 775 (998)
Q Consensus 700 i~vvGDiHG~~~dL~~il~~-~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 775 (998)
+.+++|||+....+...+.. ......+ -++++||+++++.....+. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d------~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDAD------ILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCC------EEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 46899999998777665431 1111112 6889999999987765544 2222 23345799999999985
No 99
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.39 E-value=0.01 Score=63.15 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=40.2
Q ss_pred eCHHHHHHHHHHc-CCcEEEEcccccccceEEe-----cCCeEEEEeccccccC--CCCCe-EEEEEEcCC-ceEEeEEe
Q 001901 882 FGPDRVMEFCNNN-DLQLIVRAHECVMDGFERF-----AQGHLITLFSATNYCG--TANNA-GAILVLGRD-LVVVPKLI 951 (998)
Q Consensus 882 fg~~~~~~fl~~~-~l~~iiR~H~~~~~G~~~~-----~~~~~iTvfSa~~y~~--~~~n~-ga~l~~~~~-~~~~~~~~ 951 (998)
.+...+.+.++++ ++++++-||.=. .+.... .++.+..+++ +|-. ..+|. =.++.++.+ ..|..+.+
T Consensus 135 ~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~--~~q~~~~~g~~~~r~~~f~~~~~~i~~~ty 211 (214)
T cd07399 135 DGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLA--DYQGEPNGGNGFLRLLEFDPDNNKIDVRTY 211 (214)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEee--cccCCCCCCcceEEEEEEecCCCEEEEEeC
Confidence 4566788889988 899999999632 333332 1334555543 3421 11221 134555555 57777777
Q ss_pred cc
Q 001901 952 HP 953 (998)
Q Consensus 952 ~~ 953 (998)
.|
T Consensus 212 sp 213 (214)
T cd07399 212 SP 213 (214)
T ss_pred CC
Confidence 66
No 100
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.37 E-value=0.0025 Score=63.06 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=28.1
Q ss_pred eEEEeccccCCCCCh-H-HHHHHHHHhhhcCCCcEEEeecCccc
Q 001901 733 DYLFLGDYVDRGQHS-L-ETITLLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s-~-evl~ll~~lk~~~p~~v~llrGNHE~ 774 (998)
.+|++||+++.|... . +...++-.++... ..+++++||||.
T Consensus 38 ~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNHD~ 80 (144)
T cd07400 38 LVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNHDV 80 (144)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCCeE
Confidence 688999999998742 2 2334444443322 379999999998
No 101
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.32 E-value=0.00045 Score=76.36 Aligned_cols=70 Identities=20% Similarity=0.082 Sum_probs=49.7
Q ss_pred CCeEEEecCCCC----HHHHHHHHHHcCCCCCCCCccceeEEEeccccCCC--CChHHHHHHHHHhhhcCCCcEEEeecC
Q 001901 698 APIKIFGDLHGQ----FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG--QHSLETITLLLALKVEYPNNVHLIRGN 771 (998)
Q Consensus 698 ~~i~vvGDiHG~----~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG--~~s~evl~ll~~lk~~~p~~v~llrGN 771 (998)
.+|.+++|||.. ...+.++++.......+ -++++|||+|++ ...-+++.+|..|+... .+|.+.||
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pD------lVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GN 121 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQKPD------LILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGN 121 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCC------EEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCC
Confidence 469999999976 45577777665432222 688999999954 23345666777776554 49999999
Q ss_pred cccc
Q 001901 772 HEAA 775 (998)
Q Consensus 772 HE~~ 775 (998)
||..
T Consensus 122 HD~~ 125 (271)
T PRK11340 122 HDRP 125 (271)
T ss_pred CCcc
Confidence 9973
No 102
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.28 E-value=0.00044 Score=73.83 Aligned_cols=70 Identities=30% Similarity=0.300 Sum_probs=49.6
Q ss_pred CCeEEEecCCCCHH----HHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChH-HHHHHHHHhhhcCCCcEEEeecCc
Q 001901 698 APIKIFGDLHGQFG----DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-ETITLLLALKVEYPNNVHLIRGNH 772 (998)
Q Consensus 698 ~~i~vvGDiHG~~~----dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-evl~ll~~lk~~~p~~v~llrGNH 772 (998)
.++.+++|+|.... .+.++++.+.....+ -+|+.||++|.+.... ++..++..++ .+..++++.|||
T Consensus 2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d------~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNH 73 (223)
T cd07385 2 LRIAHLSDLHLGPFVSRERLERLVEKINALKPD------LVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNH 73 (223)
T ss_pred CEEEEEeecCCCccCCHHHHHHHHHHHhccCCC------EEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCc
Confidence 36899999998743 566776665432222 6888999999987765 5555555443 234699999999
Q ss_pred ccc
Q 001901 773 EAA 775 (998)
Q Consensus 773 E~~ 775 (998)
|..
T Consensus 74 D~~ 76 (223)
T cd07385 74 DYY 76 (223)
T ss_pred ccc
Confidence 984
No 103
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.16 E-value=0.014 Score=59.68 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=44.7
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccc
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 776 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 776 (998)
+.|.|++|.||...+..+.++.......+ -+|.+||++...... +|......+++.+|||.|...
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d------~vih~GD~~~~~~~~--------~l~~~~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVD------AVIHAGDSTSPFTLD--------ALEGGLAAKLIAVRGNCDGEV 66 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCC------EEEECCCcCCccchH--------HhhcccccceEEEEccCCCcc
Confidence 46899999999997655555554433333 688899999865531 221112368999999999843
No 104
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.09 E-value=0.0016 Score=70.16 Aligned_cols=177 Identities=13% Similarity=0.188 Sum_probs=87.8
Q ss_pred eEEEecCCCCH------HHHHHHHHHcCCCCCCCCccceeEEEeccccCC--CC---C--hHHHHHHHHHhhhcCCCcEE
Q 001901 700 IKIFGDLHGQF------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDR--GQ---H--SLETITLLLALKVEYPNNVH 766 (998)
Q Consensus 700 i~vvGDiHG~~------~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDR--G~---~--s~evl~ll~~lk~~~p~~v~ 766 (998)
+++++|+|... ..+++.+..... ..+ .++++||++|. |. . ..+++.+|..|+.. +..|+
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~-~~d------~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~ 72 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEAR-KAD------ALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCY 72 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhc-cCC------EEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEE
Confidence 36899999542 234454544321 112 68899999995 21 1 13456666666543 35799
Q ss_pred EeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhhcccceeE-EEcCeEEEecCCccCccc-CHHhhhhccC-C
Q 001901 767 LIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAA-LIEKKIICMHGGIGRSIN-HVEQIENLQR-P 843 (998)
Q Consensus 767 llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa-~i~~~il~vHgGi~~~~~-~~~~i~~i~r-p 843 (998)
+++||||...-. ...+..| . .++.. +... +-+.+++++||-.-..-. ...-.+++-| |
T Consensus 73 ~v~GNHD~~~~~-------~~~~~~g----i-------~~l~~-~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~ 133 (231)
T TIGR01854 73 FMHGNRDFLIGK-------RFAREAG----M-------TLLPD-PSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQP 133 (231)
T ss_pred EEcCCCchhhhH-------HHHHHCC----C-------EEECC-CEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCH
Confidence 999999973211 0111111 1 11111 1122 235689999997643100 0111122111 1
Q ss_pred cc------cCC-CCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCcEEEEcccccccce
Q 001901 844 IT------MEA-GSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGF 910 (998)
Q Consensus 844 ~~------~~~-~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~ 910 (998)
.. ++. ....+...+++-..... . .+..-.....+..+.++++..+.+++|-||.=.+.=+
T Consensus 134 ~~~~~~~~l~~~~r~~l~~~~~~~s~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~ 200 (231)
T TIGR01854 134 WLQRLFLHLPLAVRVKLARKIRAESRADK---Q----MKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIH 200 (231)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhc---C----CCcchhhCCCHHHHHHHHHHcCCCEEEECCccCccee
Confidence 10 000 00112233333221100 0 0001123346788899999999999999998544333
No 105
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.02 E-value=0.0018 Score=66.43 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=27.0
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHhhhcCCCcEEEeecCcccc
Q 001901 733 DYLFLGDYVDRGQHS--LETITLLLALKVEYPNNVHLIRGNHEAA 775 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s--~evl~ll~~lk~~~p~~v~llrGNHE~~ 775 (998)
.+|++||++|..... .+...+-+.......-.+++++||||..
T Consensus 44 ~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 44 RLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred EEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccc
Confidence 799999999865432 2222211111223345799999999984
No 106
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.94 E-value=0.0027 Score=64.89 Aligned_cols=40 Identities=35% Similarity=0.535 Sum_probs=29.8
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccch
Q 001901 733 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 777 (998)
.+|++||++++|..... +.+|..+ +..+++++||||....
T Consensus 45 ~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 45 TVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred EEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 79999999999987644 4444443 3469999999997543
No 107
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=96.94 E-value=0.0017 Score=70.31 Aligned_cols=68 Identities=26% Similarity=0.215 Sum_probs=46.4
Q ss_pred CeEEEecCCCCH-----H-HHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCc
Q 001901 699 PIKIFGDLHGQF-----G-DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 772 (998)
Q Consensus 699 ~i~vvGDiHG~~-----~-dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 772 (998)
+|.+++|+|..+ . .|.++++.+.-...+ -+|+.||++++.....+++..|..+ .+..|+++.|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d------~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKID------HLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCC------EEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCC
Confidence 478999999763 1 245565555322222 6899999999876666666555543 335699999999
Q ss_pred ccc
Q 001901 773 EAA 775 (998)
Q Consensus 773 E~~ 775 (998)
|..
T Consensus 72 D~~ 74 (239)
T TIGR03729 72 DML 74 (239)
T ss_pred CCC
Confidence 974
No 108
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.83 E-value=0.73 Score=53.78 Aligned_cols=187 Identities=16% Similarity=0.173 Sum_probs=100.6
Q ss_pred cEEEEECCCCc--EEEecCCCC-----CCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCC
Q 001901 151 DVHCYDVLTNK--WSRITPFGE-----PPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (998)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g~-----~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~ 223 (998)
.+++||..+.+ |+.-..... ...++..-+.++.+++||+.+. ...++.||..+....|+.-.
T Consensus 80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~---- 148 (394)
T PRK11138 80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------KGQVYALNAEDGEVAWQTKV---- 148 (394)
T ss_pred eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-------CCEEEEEECCCCCCcccccC----
Confidence 67889988664 875332100 0112333345666788887543 24699999988766797643
Q ss_pred CCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCC
Q 001901 224 GPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDAS 303 (998)
Q Consensus 224 ~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~ 303 (998)
+.. ...+-++.++ .+|+..+ + ..++.||+.+....|+.-..... ...+...+-++.++.+|+..+.
T Consensus 149 -~~~-~~ssP~v~~~-~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~~~--~~~~~~~sP~v~~~~v~~~~~~--- 214 (394)
T PRK11138 149 -AGE-ALSRPVVSDG-LVLVHTS-N-----GMLQALNESDGAVKWTVNLDVPS--LTLRGESAPATAFGGAIVGGDN--- 214 (394)
T ss_pred -CCc-eecCCEEECC-EEEEECC-C-----CEEEEEEccCCCEeeeecCCCCc--ccccCCCCCEEECCEEEEEcCC---
Confidence 111 1122234444 6776433 1 36999999998888988543211 0001112233456776664321
Q ss_pred CCCcccEEEEecCCCCeEEEEECCCCCCC----Cc---ceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCe--
Q 001901 304 SVPLASAYGLAKHRDGRWEWAIAPGVSPS----PR---YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV-- 374 (998)
Q Consensus 304 ~~~~~dv~~~~~~~~~~W~w~~~~g~~P~----pR---~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~-- 374 (998)
..++.++.. +++-.|......+.. .| ...+-++.++.+|+.+. ...++.+|+.+.+
T Consensus 215 ----g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~----------~g~l~ald~~tG~~~ 279 (394)
T PRK11138 215 ----GRVSAVLME-QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY----------NGNLVALDLRSGQIV 279 (394)
T ss_pred ----CEEEEEEcc-CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc----------CCeEEEEECCCCCEE
Confidence 234555543 344344332211110 01 12344567888888642 2358999998874
Q ss_pred EEE
Q 001901 375 WCD 377 (998)
Q Consensus 375 W~~ 377 (998)
|+.
T Consensus 280 W~~ 282 (394)
T PRK11138 280 WKR 282 (394)
T ss_pred Eee
Confidence 764
No 109
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=96.80 E-value=0.059 Score=59.17 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCcEEEEcccccccceE
Q 001901 884 PDRVMEFCNNNDLQLIVRAHECVMDGFE 911 (998)
Q Consensus 884 ~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 911 (998)
...+.+.|++.++++++-||.=......
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~ 222 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGR 222 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceE
Confidence 3567778899999999999997655543
No 110
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.75 E-value=0.0035 Score=69.12 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=47.3
Q ss_pred CeEEEecCC-CC------------HHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCC-hHHHHHHHHHhhhcCCCc
Q 001901 699 PIKIFGDLH-GQ------------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-SLETITLLLALKVEYPNN 764 (998)
Q Consensus 699 ~i~vvGDiH-G~------------~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-s~evl~ll~~lk~~~p~~ 764 (998)
++.+++|+| +. ...|.++++.+.....+ -+|++||+++.|.. +.+-+..++.+-...+-.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d------~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p 75 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLD------FVVQLGDIIDGDNARAEEALDAVLAILDRLKGP 75 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCC------EEEECCCeecCCCchHHHHHHHHHHHHHhcCCC
Confidence 588999999 22 45666677666432222 58899999998873 223333333333333356
Q ss_pred EEEeecCccccch
Q 001901 765 VHLIRGNHEAADI 777 (998)
Q Consensus 765 v~llrGNHE~~~~ 777 (998)
++++.||||....
T Consensus 76 ~~~v~GNHD~~~~ 88 (267)
T cd07396 76 VHHVLGNHDLYNP 88 (267)
T ss_pred EEEecCccccccc
Confidence 9999999998644
No 111
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=96.73 E-value=0.0026 Score=67.67 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=46.1
Q ss_pred CeEEEecCC-CCH--------------HHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcC--
Q 001901 699 PIKIFGDLH-GQF--------------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEY-- 761 (998)
Q Consensus 699 ~i~vvGDiH-G~~--------------~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~-- 761 (998)
+++.++|+| |.. ..|.++++.+.....+ .+|+.||++|....+.+.+..+..+-.++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVD------FVLIAGDLFDSNNPSPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCC------EEEECCcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999 422 2355555554332222 68999999998876555443333332222
Q ss_pred -CCcEEEeecCccccch
Q 001901 762 -PNNVHLIRGNHEAADI 777 (998)
Q Consensus 762 -p~~v~llrGNHE~~~~ 777 (998)
.-.++++.||||....
T Consensus 75 ~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 75 AGIPVFIIAGNHDSPSR 91 (223)
T ss_pred CCCCEEEecCCCCCccc
Confidence 3469999999998654
No 112
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.64 E-value=0.0042 Score=67.96 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=45.9
Q ss_pred CCeEEEecCC-CC-----------HHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHH----HHHHHhhhcC
Q 001901 698 APIKIFGDLH-GQ-----------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETI----TLLLALKVEY 761 (998)
Q Consensus 698 ~~i~vvGDiH-G~-----------~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl----~ll~~lk~~~ 761 (998)
.+++.++|+| |. +..|.++++.+.-...+ .+|+.||++|+..-+.+.. .+|..|+...
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D------~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~ 74 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQID------ALLVAGDVFDTANPPAEAQELFNAFFRNLSDAN 74 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 3688999999 32 22344444443222222 6899999999986655443 3444554443
Q ss_pred CCcEEEeecCcccc
Q 001901 762 PNNVHLIRGNHEAA 775 (998)
Q Consensus 762 p~~v~llrGNHE~~ 775 (998)
|-.|+++.||||..
T Consensus 75 ~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 75 PIPIVVISGNHDSA 88 (253)
T ss_pred CceEEEEccCCCCh
Confidence 35799999999984
No 113
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.59 E-value=0.0043 Score=67.98 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=44.4
Q ss_pred eEEEecCCCCHHHHHHHHHHcCC---CCCCCCccceeEEEeccccCCCC-ChHHHHH------HHHHh------hhcCCC
Q 001901 700 IKIFGDLHGQFGDLMRLFDEYGS---PSTAGDIAYIDYLFLGDYVDRGQ-HSLETIT------LLLAL------KVEYPN 763 (998)
Q Consensus 700 i~vvGDiHG~~~dL~~il~~~g~---~~~~~~~~~~~~vfLGDyVDRG~-~s~evl~------ll~~l------k~~~p~ 763 (998)
|+|+||+||++..+.+.++.... ...+ -+|++||+-..+. ..++.+. -+..+ ..+.|-
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D------~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~ 74 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVD------LLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPI 74 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCc------EEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCe
Confidence 68999999999888775544321 1222 5888999975443 3343331 11111 334566
Q ss_pred cEEEeecCcccc
Q 001901 764 NVHLIRGNHEAA 775 (998)
Q Consensus 764 ~v~llrGNHE~~ 775 (998)
-+++|-||||..
T Consensus 75 ~t~fi~GNHE~~ 86 (262)
T cd00844 75 LTIFIGGNHEAS 86 (262)
T ss_pred eEEEECCCCCCH
Confidence 789999999974
No 114
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.50 E-value=0.0095 Score=71.55 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=44.2
Q ss_pred cCCeEEEecCC-CCH----HHHHHHHHHc-CCCCCCC--CccceeEEEeccccCC-CCCh---------------HHHHH
Q 001901 697 KAPIKIFGDLH-GQF----GDLMRLFDEY-GSPSTAG--DIAYIDYLFLGDYVDR-GQHS---------------LETIT 752 (998)
Q Consensus 697 ~~~i~vvGDiH-G~~----~dL~~il~~~-g~~~~~~--~~~~~~~vfLGDyVDR-G~~s---------------~evl~ 752 (998)
...+++++||| |.- ..+.++++.+ |...... ...-..+|++||+||. |.+. -++..
T Consensus 243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~ 322 (504)
T PRK04036 243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE 322 (504)
T ss_pred ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence 35689999999 652 2234444433 2221100 0001268999999994 3211 13444
Q ss_pred HHHHhhhcCCCcEEEeecCccccch
Q 001901 753 LLLALKVEYPNNVHLIRGNHEAADI 777 (998)
Q Consensus 753 ll~~lk~~~p~~v~llrGNHE~~~~ 777 (998)
+|..|.. .-.|++++||||....
T Consensus 323 ~L~~L~~--~i~V~~ipGNHD~~~~ 345 (504)
T PRK04036 323 YLKQIPE--DIKIIISPGNHDAVRQ 345 (504)
T ss_pred HHHhhhc--CCeEEEecCCCcchhh
Confidence 5555432 2369999999997543
No 115
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.41 E-value=0.0059 Score=69.76 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=44.8
Q ss_pred CCeEEEecCC-C-----------CHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCC-CChHHHHHHHHH----hhhc
Q 001901 698 APIKIFGDLH-G-----------QFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG-QHSLETITLLLA----LKVE 760 (998)
Q Consensus 698 ~~i~vvGDiH-G-----------~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~----lk~~ 760 (998)
++++.++|+| | +...|.++++.+.-...+ -+|+.||++|+. ..+.+++.++.. +-..
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD------~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~ 74 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGIT------TWIQLGDTFDVRKAITQNTMNFVREKIFDLLKE 74 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCC------EEEECCcccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3688999999 4 223445554444322222 688999999985 445555444432 2122
Q ss_pred CCCcEEEeecCcccc
Q 001901 761 YPNNVHLIRGNHEAA 775 (998)
Q Consensus 761 ~p~~v~llrGNHE~~ 775 (998)
.+-.|++|.||||..
T Consensus 75 ~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 75 AGITLHVLVGNHDMY 89 (340)
T ss_pred CCCeEEEEccCCCcc
Confidence 345799999999974
No 116
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.34 E-value=0.0075 Score=64.00 Aligned_cols=26 Identities=8% Similarity=0.087 Sum_probs=20.7
Q ss_pred eCHHHHHHHHHHcCCcEEEEcccccc
Q 001901 882 FGPDRVMEFCNNNDLQLIVRAHECVM 907 (998)
Q Consensus 882 fg~~~~~~fl~~~~l~~iiR~H~~~~ 907 (998)
.....+.+.++..+.+++|-||.=..
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~ 201 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRP 201 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 34566777888999999999998554
No 117
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.29 E-value=0.011 Score=63.85 Aligned_cols=69 Identities=26% Similarity=0.328 Sum_probs=43.9
Q ss_pred CeEEEecCCCC------------HHHHHHHHHHcCCC--CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCc
Q 001901 699 PIKIFGDLHGQ------------FGDLMRLFDEYGSP--STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNN 764 (998)
Q Consensus 699 ~i~vvGDiHG~------------~~dL~~il~~~g~~--~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~ 764 (998)
++.+++|||=. ...|.++++.+... ..+ -+|++||+++.|.. +-...++.+..+.+-.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d------~vi~~GDl~~~~~~--~~~~~~~~~l~~~~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPD------LVLVTGDLTDDGSP--ESYERLRELLAALPIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCC------EEEECccCCCCCCH--HHHHHHHHHHhhcCCC
Confidence 47899999944 34567777765432 222 58899999998753 2222222222223456
Q ss_pred EEEeecCcccc
Q 001901 765 VHLIRGNHEAA 775 (998)
Q Consensus 765 v~llrGNHE~~ 775 (998)
++.++||||..
T Consensus 73 ~~~v~GNHD~~ 83 (240)
T cd07402 73 VYLLPGNHDDR 83 (240)
T ss_pred EEEeCCCCCCH
Confidence 99999999974
No 118
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.26 E-value=1.5 Score=51.08 Aligned_cols=181 Identities=17% Similarity=0.209 Sum_probs=100.4
Q ss_pred CCcEEEEECCCCc--EEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeec--CCC
Q 001901 149 TADVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ--GPG 224 (998)
Q Consensus 149 ~~dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~--g~~ 224 (998)
.+.++.||..+.+ |+.-.... ....+...+-++.++.+|+..+. ..++.+|..+....|...... +..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~~~~ 240 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPTGAT 240 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEEECCEEEEEcCC-------CEEEEEEccCChhhheeccccCCCcc
Confidence 3568999998875 87643220 01112222334456676664432 458889998876678753211 100
Q ss_pred CCCC---cccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccC
Q 001901 225 PGPR---YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRD 301 (998)
Q Consensus 225 P~~R---~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~ 301 (998)
...| ...+-++.++ .+|+.+. + ..++++|+.+....|+.-.. .. ...++.+++||+...
T Consensus 241 ~~~~~~~~~~sP~v~~~-~vy~~~~-~-----g~l~ald~~tG~~~W~~~~~--~~-------~~~~~~~~~vy~~~~-- 302 (394)
T PRK11138 241 EIDRLVDVDTTPVVVGG-VVYALAY-N-----GNLVALDLRSGQIVWKREYG--SV-------NDFAVDGGRIYLVDQ-- 302 (394)
T ss_pred chhcccccCCCcEEECC-EEEEEEc-C-----CeEEEEECCCCCEEEeecCC--Cc-------cCcEEECCEEEEEcC--
Confidence 0001 1123344555 7887553 2 36899999988778986421 10 123456889998753
Q ss_pred CCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCe
Q 001901 302 ASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV 374 (998)
Q Consensus 302 ~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~ 374 (998)
...++.++..+ ++=.|.... ...+...+.++.++++|+... ...++++|..+.+
T Consensus 303 -----~g~l~ald~~t-G~~~W~~~~---~~~~~~~sp~v~~g~l~v~~~----------~G~l~~ld~~tG~ 356 (394)
T PRK11138 303 -----NDRVYALDTRG-GVELWSQSD---LLHRLLTAPVLYNGYLVVGDS----------EGYLHWINREDGR 356 (394)
T ss_pred -----CCeEEEEECCC-CcEEEcccc---cCCCcccCCEEECCEEEEEeC----------CCEEEEEECCCCC
Confidence 23467776643 333343221 112333445667899987532 2348889998875
No 119
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=96.21 E-value=0.11 Score=57.55 Aligned_cols=74 Identities=27% Similarity=0.357 Sum_probs=50.0
Q ss_pred CeEEEecCCCC------HHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCC-hHHHHHHHHHhhhcCCCcEEEeecC
Q 001901 699 PIKIFGDLHGQ------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-SLETITLLLALKVEYPNNVHLIRGN 771 (998)
Q Consensus 699 ~i~vvGDiHG~------~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-s~evl~ll~~lk~~~p~~v~llrGN 771 (998)
++..|+|+|-- ...+.++++.+.....+ -+|+.||+.++|.. ..+-+..++. +...+..+++++||
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D------~~v~tGDl~~~~~~~~~~~~~~~l~-~~~~~~~~~~vpGN 74 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPD------LLVVTGDLTNDGEPEEYRRLKELLA-RLELPAPVIVVPGN 74 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCC------EEEEccCcCCCCCHHHHHHHHHHHh-hccCCCceEeeCCC
Confidence 57889999976 34556666776643333 69999999999642 2222222222 23667889999999
Q ss_pred ccccchhh
Q 001901 772 HEAADINA 779 (998)
Q Consensus 772 HE~~~~~~ 779 (998)
||....+.
T Consensus 75 HD~~~~~~ 82 (301)
T COG1409 75 HDARVVNG 82 (301)
T ss_pred CcCCchHH
Confidence 99976653
No 120
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=96.17 E-value=0.00054 Score=76.00 Aligned_cols=208 Identities=9% Similarity=-0.119 Sum_probs=138.5
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhhcccc
Q 001901 732 IDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLP 811 (998)
Q Consensus 732 ~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP 811 (998)
...|+|+++++++...++.+-+.+..++.|-.+-..++++|+ ..+++++++.-.-.......+|+.+++.+..++
T Consensus 49 latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~-----~~~~~R~~LVlp~l~S~riyvid~~~ep~~~~l 123 (476)
T KOG0918|consen 49 LATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHG-----DSSFKRRYLVLPSLNSGRIYVIDVKTEPRKPSL 123 (476)
T ss_pred eeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhcc-----CcchhhhheeecccccCceEEEEeccCcCccce
Confidence 368999999999999999999999999998888889999994 355667766666566667789999999999999
Q ss_pred eeEEEcCeEEEecCCccCcccCHHhhhhccCCcccCCCCcceeccccCCCCCCCC--CCCcccCCCCCCceeeCHH--HH
Q 001901 812 LAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDS--VEGLRPNARGPGLVTFGPD--RV 887 (998)
Q Consensus 812 ~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~--~~~~~~n~rg~~~~~fg~~--~~ 887 (998)
..++.. +++|.||++.|...+...+.++.-...-+.+ ...+. |-++.+.+. ..-|. .++.. ..||-| ..
T Consensus 124 ~k~i~~-~il~~~~l~~Pht~hcla~g~v~vs~lGd~~--gn~kg-~f~llD~~~~~k~tw~--~~~~~-p~~gyDfwyq 196 (476)
T KOG0918|consen 124 EKTIDP-DILEKTGLACPHTSHCLASGNVMVSCLGDAE--GNAKG-GFLLLDSDFNEKGTWE--KPGHS-PLFGYDFWYQ 196 (476)
T ss_pred eeeech-hhHhhcCCcCCcccccccCCCeeEEeecccc--cCCcC-CeEEecCccceecccc--cCCCc-cccccceeec
Confidence 997777 9999999999987766555433211111111 11111 333332110 11121 11211 223322 22
Q ss_pred HHHHHHcCCcEEEEcccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCC--ceEEeEEecc
Q 001901 888 MEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD--LVVVPKLIHP 953 (998)
Q Consensus 888 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~ga~l~~~~~--~~~~~~~~~~ 953 (998)
-.+......+.+.+.|...-.++..+.++ ++.|+..-|.-...|.++.+-++.+ +.++.+.+|-
T Consensus 197 pr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~ 262 (476)
T KOG0918|consen 197 PRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHN 262 (476)
T ss_pred cccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCccceeEEecCCCCcceEEeeeccC
Confidence 34556667777888888544444455565 8889999998888899999988875 2334444443
No 121
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.10 E-value=0.015 Score=62.30 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=41.4
Q ss_pred CCeEEEecCC-CCHHH----------------HHHHHHHcCCCCCCCCccceeEEEeccccCCCCCh---HHHHHHHHHh
Q 001901 698 APIKIFGDLH-GQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS---LETITLLLAL 757 (998)
Q Consensus 698 ~~i~vvGDiH-G~~~d----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s---~evl~ll~~l 757 (998)
+.+.||+|+| |--.. |.++.+.......+ .+|++||+++..... -++..+|..+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d------~vIi~GDl~h~~~~~~~~~~~~~~l~~~ 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIE------ALIINGDLKHEFKKGLEWRFIREFIEVT 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCC------EEEEcCccccccCChHHHHHHHHHHHhc
Confidence 6799999999 54222 22232322221122 799999999765542 2223333332
Q ss_pred hhcCCCcEEEeecCccccc
Q 001901 758 KVEYPNNVHLIRGNHEAAD 776 (998)
Q Consensus 758 k~~~p~~v~llrGNHE~~~ 776 (998)
...+++++||||...
T Consensus 89 ----~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 89 ----FRDLILIRGNHDALI 103 (225)
T ss_pred ----CCcEEEECCCCCCcc
Confidence 247999999999743
No 122
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.01 E-value=0.0095 Score=60.16 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=27.7
Q ss_pred eEEEeccccCCCCCh--H---HHHHHHHHhhhcC-CCcEEEeecCcccc
Q 001901 733 DYLFLGDYVDRGQHS--L---ETITLLLALKVEY-PNNVHLIRGNHEAA 775 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s--~---evl~ll~~lk~~~-p~~v~llrGNHE~~ 775 (998)
.+||+||++|.+... . +.+..+..+.... .-.++++.||||..
T Consensus 41 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 41 VVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 699999999988642 1 2222233322222 24699999999974
No 123
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.97 E-value=2.8 Score=44.59 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=103.2
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEE-eeecCCCCC
Q 001901 150 ADVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHR-VVVQGPGPG 226 (998)
Q Consensus 150 ~dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~-l~~~g~~P~ 226 (998)
..+++||..+++ |+.-... +.....+..++.+|+..+. +.++.+|..+....|.. .......+
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~~------~~~~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~- 111 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLPG------PISGAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAG- 111 (238)
T ss_dssp SEEEEEETTTSEEEEEEECSS------CGGSGEEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCS-
T ss_pred CEEEEEECCCCCEEEEeeccc------cccceeeecccccccccce-------eeeEecccCCcceeeeeccccccccc-
Confidence 489999998875 7665422 2222246778888887632 37999998887778994 43211111
Q ss_pred CCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCC----ccceEEEEEeCCEEEEEeccCC
Q 001901 227 PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP----CMYATASARSDGLLLLCGGRDA 302 (998)
Q Consensus 227 ~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~----r~~~~a~~~~~~~lyvfGG~~~ 302 (998)
.+......+.++ .+|+... -..++.+|+.+....|......+..... .......++.++.+|++.+..
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g- 183 (238)
T PF13360_consen 112 VRSSSSPAVDGD-RLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG- 183 (238)
T ss_dssp TB--SEEEEETT-EEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-
T ss_pred cccccCceEecC-EEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-
Confidence 233344444454 5666543 2478999999888789885533211000 001233445567888876533
Q ss_pred CCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCe
Q 001901 303 SSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV 374 (998)
Q Consensus 303 ~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~ 374 (998)
.++.++ ..++.-.|...... ........++.||+.. . ...++++|++|++
T Consensus 184 ------~~~~~d-~~tg~~~w~~~~~~-----~~~~~~~~~~~l~~~~-~---------~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 184 ------RVVAVD-LATGEKLWSKPISG-----IYSLPSVDGGTLYVTS-S---------DGRLYALDLKTGK 233 (238)
T ss_dssp ------SEEEEE-TTTTEEEEEECSS------ECECEECCCTEEEEEE-T---------TTEEEEEETTTTE
T ss_pred ------eEEEEE-CCCCCEEEEecCCC-----ccCCceeeCCEEEEEe-C---------CCEEEEEECCCCC
Confidence 156664 44455345332111 1122455577888765 2 2459999999985
No 124
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=95.95 E-value=0.039 Score=61.54 Aligned_cols=37 Identities=8% Similarity=0.151 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHcCCcEEEEcccccccceEEecCCeEE
Q 001901 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLI 919 (998)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~i 919 (998)
....+.+.|+++++++++-||.-...-+....+++++
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~ 217 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV 217 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec
Confidence 3456778899999999999998654433334455543
No 125
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=95.91 E-value=0.012 Score=68.75 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=43.5
Q ss_pred CeEEEecCC-CC-H------HH----HHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHH----HHHHHhhhcCC
Q 001901 699 PIKIFGDLH-GQ-F------GD----LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETI----TLLLALKVEYP 762 (998)
Q Consensus 699 ~i~vvGDiH-G~-~------~d----L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl----~ll~~lk~~~p 762 (998)
+++.++|+| |. + .+ |.++.+.+.-...+ -+|+.||++|++..+.+.. .++..|+.. +
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D------~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~-~ 74 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVD------AIIVAGDIFDTGSPPSYARELYNRFVVNLQQT-G 74 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCC------EEEECCccccCCCCcHHHHHHHHHHHHHHHhc-C
Confidence 688999999 42 1 11 22333333222222 6889999999986554432 334445432 3
Q ss_pred CcEEEeecCccccc
Q 001901 763 NNVHLIRGNHEAAD 776 (998)
Q Consensus 763 ~~v~llrGNHE~~~ 776 (998)
-.|+++.||||...
T Consensus 75 ~~v~~I~GNHD~~~ 88 (407)
T PRK10966 75 CQLVVLAGNHDSVA 88 (407)
T ss_pred CcEEEEcCCCCChh
Confidence 46999999999753
No 126
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=95.88 E-value=0.018 Score=63.77 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=45.6
Q ss_pred CCeEEEecCC-C-----------CHHHHHHHHHHcCCC--CCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCC
Q 001901 698 APIKIFGDLH-G-----------QFGDLMRLFDEYGSP--STAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPN 763 (998)
Q Consensus 698 ~~i~vvGDiH-G-----------~~~dL~~il~~~g~~--~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~ 763 (998)
.+++.++|+| . ....|.++++.+... ..+ -+|+.||++|.|. .+-+..++..-.+.+.
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D------~vvitGDl~~~~~--~~~~~~~~~~l~~l~~ 86 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFD------LIVATGDLAQDHS--SEAYQHFAEGIAPLRK 86 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCC------EEEECCCCCCCCC--HHHHHHHHHHHhhcCC
Confidence 4589999999 1 145677777765321 112 5889999999885 2333333333333456
Q ss_pred cEEEeecCcccc
Q 001901 764 NVHLIRGNHEAA 775 (998)
Q Consensus 764 ~v~llrGNHE~~ 775 (998)
.++++.||||..
T Consensus 87 Pv~~v~GNHD~~ 98 (275)
T PRK11148 87 PCVWLPGNHDFQ 98 (275)
T ss_pred cEEEeCCCCCCh
Confidence 799999999973
No 127
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=95.78 E-value=0.025 Score=59.35 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=30.1
Q ss_pred eEEEeccccCCCCC---hHHHHHHHHHhhhcCCCcEEEeecCcc
Q 001901 733 DYLFLGDYVDRGQH---SLETITLLLALKVEYPNNVHLIRGNHE 773 (998)
Q Consensus 733 ~~vfLGDyVDRG~~---s~evl~ll~~lk~~~p~~v~llrGNHE 773 (998)
.+|++||+++.+.. +.+.+..++.......-.++++.||||
T Consensus 44 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 44 LVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred EEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 68999999997765 356666555544434456899999999
No 128
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=95.74 E-value=1 Score=48.24 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=91.7
Q ss_pred ccEEEEEcCCCCCceEEeeecCCCCCCC---ccc-EEEEE----CCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcc
Q 001901 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPR---YGH-VMALV----GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (998)
Q Consensus 201 ~dv~~~Dl~t~t~~W~~l~~~g~~P~~R---~~h-s~~~~----~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~ 272 (998)
..++++|+.|. +|..++. .+.++ ..+ ...-+ ++-+++.+....+......+++|++.++ .|+.+.
T Consensus 14 ~~~~V~NP~T~--~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~--~Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTG--QSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSN--SWRTIE 86 (230)
T ss_pred CcEEEECCCCC--CEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCC--Cccccc
Confidence 46999999997 5888862 22211 111 11111 1225555544322223457899999999 999987
Q ss_pred cCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEE-EEECCCCCCCCcceeEEEEECCEEEEEcc
Q 001901 273 PEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWE-WAIAPGVSPSPRYQHAAVFVNARLHVSGG 351 (998)
Q Consensus 273 ~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~-w~~~~g~~P~pR~~hsav~~~~~L~V~GG 351 (998)
... +....... .+..+|.||-+.-..... ....+..||..+. +|. ....+............+.++|+|.++..
T Consensus 87 ~~~--~~~~~~~~-~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E-~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 87 CSP--PHHPLKSR-GVCINGVLYYLAYTLKTN-PDYFIVSFDVSSE-RFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred cCC--CCccccCC-eEEECCEEEEEEEECCCC-CcEEEEEEEcccc-eEeeeeecCccccccccceEEEEECCEEEEEEe
Confidence 432 11111222 456688888876433211 1225777877765 555 34333211111223456777899888765
Q ss_pred cCCCCCccccCCeEEEEE-CCCCeEEEcccC
Q 001901 352 ALGGGRMVEDSSSVAVLD-TAAGVWCDTKSV 381 (998)
Q Consensus 352 ~~~~~~~~~~~~dv~vyD-~~t~~W~~v~~~ 381 (998)
..... .-+||+++ ....+|+++-..
T Consensus 162 ~~~~~-----~~~IWvl~d~~~~~W~k~~~i 187 (230)
T TIGR01640 162 KKDTN-----NFDLWVLNDAGKQEWSKLFTV 187 (230)
T ss_pred cCCCC-----cEEEEEECCCCCCceeEEEEE
Confidence 32211 35799996 446679987665
No 129
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=95.68 E-value=0.034 Score=60.37 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=26.8
Q ss_pred eEEEeccccCCCC-----C-------h----HHHHHHHHHhhhcCCCcEEEeecCccccc
Q 001901 733 DYLFLGDYVDRGQ-----H-------S----LETITLLLALKVEYPNNVHLIRGNHEAAD 776 (998)
Q Consensus 733 ~~vfLGDyVDRG~-----~-------s----~evl~ll~~lk~~~p~~v~llrGNHE~~~ 776 (998)
.+|++||++|+.. . . .++..+|-.|.. .-.|+++.||||...
T Consensus 38 ~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~--~~~v~~ipGNHD~~~ 95 (243)
T cd07386 38 YLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPS--HIKIIIIPGNHDAVR 95 (243)
T ss_pred EEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhccc--CCeEEEeCCCCCccc
Confidence 7899999999731 0 0 122334344432 246999999999853
No 130
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=95.43 E-value=0.034 Score=60.03 Aligned_cols=45 Identities=9% Similarity=-0.020 Sum_probs=28.7
Q ss_pred eCHHHHHHHHHHcCCcEEEEcccccccceE---EecCCeEEEEecccccc
Q 001901 882 FGPDRVMEFCNNNDLQLIVRAHECVMDGFE---RFAQGHLITLFSATNYC 928 (998)
Q Consensus 882 fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~---~~~~~~~iTvfSa~~y~ 928 (998)
++...+.+.+++.++++++-||.=...-.. ...+| |+.++++.=|
T Consensus 180 ~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~g--i~~~~~~~~~ 227 (232)
T cd07393 180 GDDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGG--IRYQLVSADY 227 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEECCCCCCcccccccceECC--EEEEEEcchh
Confidence 355677888899999999999974322211 12333 5666666544
No 131
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=95.41 E-value=0.42 Score=52.44 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=24.0
Q ss_pred eCHHHHHHHHHHcCCcEEEEcccccccceEEe
Q 001901 882 FGPDRVMEFCNNNDLQLIVRAHECVMDGFERF 913 (998)
Q Consensus 882 fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~ 913 (998)
-.++..++.|+..+-.+|.-||+- ++.+..
T Consensus 203 l~~~~s~~il~~~~P~~vfsGhdH--~~C~~~ 232 (257)
T cd08163 203 LEPSLSEVILKAVQPVIAFSGDDH--DYCEVV 232 (257)
T ss_pred cCHHHHHHHHHhhCCcEEEecCCC--ccceeE
Confidence 478999999999999999999983 444443
No 132
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.38 E-value=7.1 Score=45.07 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=94.7
Q ss_pred cEEEEECCCCc--EEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCC
Q 001901 151 DVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (998)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R 228 (998)
.+++||..+++ |+.-... +..-+.++.++.+|+.+. ...++.||..+....|.... +..
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~-----~~~- 136 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDE------RLSGGVGADGGLVFVGTE-------KGEVIALDAEDGKELWRAKL-----SSE- 136 (377)
T ss_pred eEEEEEccCCcEeeeecCCC------CcccceEEcCCEEEEEcC-------CCEEEEEECCCCcEeeeecc-----Cce-
Confidence 68899988764 8654322 112233444667776443 24699999987666787543 111
Q ss_pred cccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcc
Q 001901 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLA 308 (998)
Q Consensus 229 ~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~ 308 (998)
...+.++.++ .+|+..+ + ..++.||+.+....|+.-..... .........++.++.+| +|..+ .
T Consensus 137 ~~~~p~v~~~-~v~v~~~-~-----g~l~a~d~~tG~~~W~~~~~~~~--~~~~~~~sp~~~~~~v~-~~~~~------g 200 (377)
T TIGR03300 137 VLSPPLVANG-LVVVRTN-D-----GRLTALDAATGERLWTYSRVTPA--LTLRGSASPVIADGGVL-VGFAG------G 200 (377)
T ss_pred eecCCEEECC-EEEEECC-C-----CeEEEEEcCCCceeeEEccCCCc--eeecCCCCCEEECCEEE-EECCC------C
Confidence 1122333444 6666433 2 35899999888778986533211 00111122334466554 44321 2
Q ss_pred cEEEEecCCCCeEEEEECCCCCC----CCc---ceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCe--EEE
Q 001901 309 SAYGLAKHRDGRWEWAIAPGVSP----SPR---YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV--WCD 377 (998)
Q Consensus 309 dv~~~~~~~~~~W~w~~~~g~~P----~pR---~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~--W~~ 377 (998)
.++.++.. +++-.|......+. ..| ...+.++.++.+|+... ...+++||+++.+ |..
T Consensus 201 ~v~ald~~-tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~----------~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 201 KLVALDLQ-TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY----------QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEEEcc-CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc----------CCEEEEEECCCCcEEEee
Confidence 45666654 33334432211110 001 12334556788887542 2358999998764 654
No 133
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.32 E-value=4.2 Score=46.97 Aligned_cols=185 Identities=18% Similarity=0.238 Sum_probs=99.6
Q ss_pred cCCcEEEEECCCCc--EEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCC
Q 001901 148 ATADVHCYDVLTNK--WSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP 225 (998)
Q Consensus 148 ~~~dv~~yD~~t~~--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P 225 (998)
....++.||..+.+ |+.-... ....+.++.++.+|+..+ ...++.+|..+....|..-... +..
T Consensus 113 ~~g~l~ald~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~-~~~ 178 (377)
T TIGR03300 113 EKGEVIALDAEDGKELWRAKLSS------EVLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVT-PAL 178 (377)
T ss_pred CCCEEEEEECCCCcEeeeeccCc------eeecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCC-Cce
Confidence 34578999987764 8754321 112233445677777543 2459999998866678764311 100
Q ss_pred CCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCC--CCCcc--ceEEEEEeCCEEEEEeccC
Q 001901 226 GPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEG--PPPCM--YATASARSDGLLLLCGGRD 301 (998)
Q Consensus 226 ~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~--P~~r~--~~~a~~~~~~~lyvfGG~~ 301 (998)
..+...+.++.++ .+ ++|..++ .+..+|+.+....|+.-...+.. ...+. ......+.++.+|+...
T Consensus 179 ~~~~~~sp~~~~~-~v-~~~~~~g-----~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-- 249 (377)
T TIGR03300 179 TLRGSASPVIADG-GV-LVGFAGG-----KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-- 249 (377)
T ss_pred eecCCCCCEEECC-EE-EEECCCC-----EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc--
Confidence 1122233444554 44 4444332 68899998887788753221110 00010 11223456788887542
Q ss_pred CCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCC--eEEE
Q 001901 302 ASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG--VWCD 377 (998)
Q Consensus 302 ~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~--~W~~ 377 (998)
...++.++.. +++-.|....+ ...+.++.++++|+... ...++++|..+. .|+.
T Consensus 250 -----~g~l~a~d~~-tG~~~W~~~~~------~~~~p~~~~~~vyv~~~----------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 250 -----QGRVAALDLR-SGRVLWKRDAS------SYQGPAVDDNRLYVTDA----------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred -----CCEEEEEECC-CCcEEEeeccC------CccCceEeCCEEEEECC----------CCeEEEEECCCCcEEEcc
Confidence 1246677664 33333433211 11234567888988642 245899998876 4754
No 134
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.25 E-value=0.043 Score=63.80 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=53.2
Q ss_pred CCeEEEecCCCC------------HHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhc-----
Q 001901 698 APIKIFGDLHGQ------------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVE----- 760 (998)
Q Consensus 698 ~~i~vvGDiHG~------------~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~----- 760 (998)
.+|.+++|+|-- +..|.++++.+.-...+ -+|+-||++|+..-|.+++..++.+-.+
T Consensus 4 mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD------~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~ 77 (405)
T TIGR00583 4 IRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVD------MILLGGDLFHENKPSRKSLYQVLRSLRLYCLGD 77 (405)
T ss_pred eEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHhhccC
Confidence 468999999932 45677777776433333 5888999999999998888665554332
Q ss_pred -------------------------------CCCcEEEeecCccccc
Q 001901 761 -------------------------------YPNNVHLIRGNHEAAD 776 (998)
Q Consensus 761 -------------------------------~p~~v~llrGNHE~~~ 776 (998)
..--||+|-||||...
T Consensus 78 ~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 78 KPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred CccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1237999999999965
No 135
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.16 E-value=0.057 Score=59.21 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHHHHHHcCCcEEEEcccccccceEEe
Q 001901 887 VMEFCNNNDLQLIVRAHECVMDGFERF 913 (998)
Q Consensus 887 ~~~fl~~~~l~~iiR~H~~~~~G~~~~ 913 (998)
+.+.|++.++++++-||.=...+.+..
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceee
Confidence 778899999999999999766664544
No 136
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.11 E-value=5.5 Score=42.29 Aligned_cols=182 Identities=21% Similarity=0.306 Sum_probs=102.6
Q ss_pred cEEEEECCCCc--EEEecCCCCCCCCccceE--EEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCC
Q 001901 151 DVHCYDVLTNK--WSRITPFGEPPTPRAAHV--ATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPG 226 (998)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g~~P~pR~~hs--a~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~ 226 (998)
.+..+|+.+++ |+.-.. + +..+.. .+..++.+|+..+ ...+++||..+....|+.-. +
T Consensus 4 ~l~~~d~~tG~~~W~~~~~----~-~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~-----~- 65 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLG----P-GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL-----P- 65 (238)
T ss_dssp EEEEEETTTTEEEEEEECS----S-SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC-----S-
T ss_pred EEEEEECCCCCEEEEEECC----C-CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec-----c-
Confidence 57788887764 876321 1 122222 3336778888843 36799999988766788764 1
Q ss_pred CCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEE-cccCCCCCCCccceEEEEEeCCEEEEEeccCCCCC
Q 001901 227 PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRK-LEPEGEGPPPCMYATASARSDGLLLLCGGRDASSV 305 (998)
Q Consensus 227 ~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~-v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~ 305 (998)
.+.....+..++ .+|+..+. +.++.||..+....|+. ...... ..........+.++.+|+...
T Consensus 66 ~~~~~~~~~~~~-~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------ 130 (238)
T PF13360_consen 66 GPISGAPVVDGG-RVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPP--AGVRSSSSPAVDGDRLYVGTS------ 130 (238)
T ss_dssp SCGGSGEEEETT-EEEEEETT------SEEEEEETTTSCEEEEEEE-SSCT--CSTB--SEEEEETTEEEEEET------
T ss_pred ccccceeeeccc-ccccccce------eeeEecccCCcceeeeeccccccc--cccccccCceEecCEEEEEec------
Confidence 122222445555 67776521 27999999998889994 443211 112233344445777777643
Q ss_pred CcccEEEEecCCCCeEEEEECCCCCCCC-------cceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCe--EE
Q 001901 306 PLASAYGLAKHRDGRWEWAIAPGVSPSP-------RYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV--WC 376 (998)
Q Consensus 306 ~~~dv~~~~~~~~~~W~w~~~~g~~P~p-------R~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~--W~ 376 (998)
...++.++.. +|+-.|......++.. ......++.++.+|+..+. ..+..+|.++.+ |+
T Consensus 131 -~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------g~~~~~d~~tg~~~w~ 198 (238)
T PF13360_consen 131 -SGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD----------GRVVAVDLATGEKLWS 198 (238)
T ss_dssp -CSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT----------SSEEEEETTTTEEEEE
T ss_pred -cCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC----------CeEEEEECCCCCEEEE
Confidence 3456777655 3443444433332211 1123444456788887653 125666999997 84
Q ss_pred E
Q 001901 377 D 377 (998)
Q Consensus 377 ~ 377 (998)
.
T Consensus 199 ~ 199 (238)
T PF13360_consen 199 K 199 (238)
T ss_dssp E
T ss_pred e
Confidence 3
No 137
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.02 E-value=0.09 Score=55.84 Aligned_cols=196 Identities=19% Similarity=0.238 Sum_probs=101.4
Q ss_pred EEecCCCC------HHHHHHHHHHcCCCCCCCCccceeEEEeccccC--CCCC-----hHHHHHHHHHhhhcCCCcEEEe
Q 001901 702 IFGDLHGQ------FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVD--RGQH-----SLETITLLLALKVEYPNNVHLI 768 (998)
Q Consensus 702 vvGDiHG~------~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVD--RG~~-----s~evl~ll~~lk~~~p~~v~ll 768 (998)
.|+|+|=. -+-|+++++.... ..+ .+.+|||++| .|.+ --+|...|..+.. -..++|.+
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad------~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~-~G~~v~~i 73 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAA-QAD------ALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLAR-KGTRVYYI 73 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccc-cCc------EEEEechhhhhhhcCCcccHHHHHHHHHHHHHHh-cCCeEEEe
Confidence 57888844 2344555554322 222 6889999998 3433 2345555554432 34689999
Q ss_pred ecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhhcccceeEEE---cCeEEEecCCccCcccC------------
Q 001901 769 RGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALI---EKKIICMHGGIGRSINH------------ 833 (998)
Q Consensus 769 rGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i---~~~il~vHgGi~~~~~~------------ 833 (998)
.||||. .+...+ ....| .+.-+|-..++ +.+++++||-.-.....
T Consensus 74 ~GN~Df-ll~~~f------~~~~g-------------~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~ 133 (237)
T COG2908 74 HGNHDF-LLGKRF------AQEAG-------------GMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWA 133 (237)
T ss_pred cCchHH-HHHHHH------HhhcC-------------ceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccH
Confidence 999995 332222 11122 12334444433 67999999976432100
Q ss_pred HHhhhhccCCcccCCCCcceeccccCCCCCCCCCCCcccCCCCC--CceeeCHHHHHHHHHHcCCcEEEEcccccccceE
Q 001901 834 VEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGP--GLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 911 (998)
Q Consensus 834 ~~~i~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~rg~--~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 911 (998)
..++.-+.+|+... ..+..=+|+.-. |....... -.....+.++.+-++++|++.+|.||.=.+..-.
T Consensus 134 ~~~~lflnl~l~~R---~ri~~k~r~~s~-------~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~ 203 (237)
T COG2908 134 WLQLLFLNLPLRVR---RRIAYKIRSLSS-------WAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN 203 (237)
T ss_pred HHHHHHHHhHHHHH---HHHHHHHHHhhH-------HhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhcc
Confidence 01111122222210 011122444431 11110000 0122467778888999999999999986654443
Q ss_pred EecCCeEEEEecccccc--CCCCCeEEEEEEcCCce
Q 001901 912 RFAQGHLITLFSATNYC--GTANNAGAILVLGRDLV 945 (998)
Q Consensus 912 ~~~~~~~iTvfSa~~y~--~~~~n~ga~l~~~~~~~ 945 (998)
.. + ..|| |.--..++++.++.+..
T Consensus 204 i~--~--------~~yi~lGdW~~~~s~~~v~~~~~ 229 (237)
T COG2908 204 IP--G--------ITYINLGDWVSEGSILEVDDGGL 229 (237)
T ss_pred CC--C--------ceEEecCcchhcceEEEEecCcE
Confidence 32 2 1222 22234678888877653
No 138
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.96 E-value=1.3 Score=49.02 Aligned_cols=114 Identities=14% Similarity=0.218 Sum_probs=71.6
Q ss_pred cCCcEEEEECCCCcEEEecCCCCCCCCccceEEEEe-CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeec--CCC
Q 001901 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ--GPG 224 (998)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~--g~~ 224 (998)
....+..||..+.+|..+... -..-. +++... +++||+.|-..-.+.....+-.||..+.+ |+.+... ..+
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~---i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~i 87 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG---ISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSI 87 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC---ceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccC
Confidence 356888999999999988653 11111 333333 56888888665554345668899999875 9888742 345
Q ss_pred CCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEccc
Q 001901 225 PGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEP 273 (998)
Q Consensus 225 P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~ 273 (998)
|.+-..-+....+...+++.|.... -..-+..||= . +|..+..
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~dG--s--~W~~i~~ 130 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSAN--GSTFLMKYDG--S--SWSSIGS 130 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecC--CCceEEEEcC--C--ceEeccc
Confidence 6664333332223336777776521 1345666754 5 8999876
No 139
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=94.84 E-value=0.051 Score=56.65 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=32.1
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHhhhcCC----CcEEEeecCccc
Q 001901 733 DYLFLGDYVDRGQHS--LETITLLLALKVEYP----NNVHLIRGNHEA 774 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s--~evl~ll~~lk~~~p----~~v~llrGNHE~ 774 (998)
-+|||||++|.|+.+ .|.+..+..++..|. -.++.|.||||.
T Consensus 45 ~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDI 92 (195)
T cd08166 45 IVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDI 92 (195)
T ss_pred EEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCc
Confidence 589999999999853 346666666664433 368899999997
No 140
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=94.70 E-value=0.077 Score=55.22 Aligned_cols=65 Identities=18% Similarity=0.098 Sum_probs=39.8
Q ss_pred cCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChH-HHHHHHHHhhhcC---------------------C
Q 001901 705 DLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-ETITLLLALKVEY---------------------P 762 (998)
Q Consensus 705 DiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-evl~ll~~lk~~~---------------------p 762 (998)
|++|+=.=|.++++.+-....-. .++||||++|.|--+- |-......++..+ .
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~Pd-----~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~ 98 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKPD-----AVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGK 98 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCC-----EEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCC
Confidence 44666666777776653322111 6889999999875332 2234444443333 1
Q ss_pred CcEEEeecCccc
Q 001901 763 NNVHLIRGNHEA 774 (998)
Q Consensus 763 ~~v~llrGNHE~ 774 (998)
-.+++|.||||.
T Consensus 99 i~~i~V~GNHDI 110 (193)
T cd08164 99 TPLINIAGNHDV 110 (193)
T ss_pred ceEEEECCcccC
Confidence 357899999998
No 141
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=94.65 E-value=3.6 Score=43.58 Aligned_cols=205 Identities=19% Similarity=0.205 Sum_probs=115.4
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEecccc--CCCCChHHHHHH-HHHhhhcCCCcEEEeecCccc
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYV--DRGQHSLETITL-LLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyV--DRG~~s~evl~l-l~~lk~~~p~~v~llrGNHE~ 774 (998)
.++..+.||||.++.+.++++.+.....+ -+++-||+. ++|+.-.-.... +-.++. +-..|+.+.||.|.
T Consensus 4 mkil~vtDlHg~~~~~~k~~~~~~~~~~D------~lviaGDlt~~~~~~~~~~~~~~~~e~l~~-~~~~v~avpGNcD~ 76 (226)
T COG2129 4 MKILAVTDLHGSEDSLKKLLNAAADIRAD------LLVIAGDLTYFHFGPKEVAEELNKLEALKE-LGIPVLAVPGNCDP 76 (226)
T ss_pred ceEEEEeccccchHHHHHHHHHHhhccCC------EEEEecceehhhcCchHHHHhhhHHHHHHh-cCCeEEEEcCCCCh
Confidence 57899999999999999999887644333 678899999 887753222211 333332 23579999999887
Q ss_pred cchhhhcCChHHHHHHhCCCcchhhhhhhhhhhcccceeEEEcCeEEEecCCccCcc-c-----CHHhhhhccCCcccCC
Q 001901 775 ADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSI-N-----HVEQIENLQRPITMEA 848 (998)
Q Consensus 775 ~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~~~il~vHgGi~~~~-~-----~~~~i~~i~rp~~~~~ 848 (998)
..+-.. .+..+. .+.. -...+++--||-=||..+.- . +-++|....+-.....
T Consensus 77 ~~v~~~-------l~~~~~----~v~~----------~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~ 135 (226)
T COG2129 77 PEVIDV-------LKNAGV----NVHG----------RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKA 135 (226)
T ss_pred HHHHHH-------HHhccc----cccc----------ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcc
Confidence 544221 111211 1111 11234444455557776542 1 2344544333211111
Q ss_pred CCcceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCcEEEEcccccccceEEecCCeEEEEecccccc
Q 001901 849 GSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYC 928 (998)
Q Consensus 849 ~~~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa~~y~ 928 (998)
.+..-.=++-+-|.. ...+ ++-| ..--|..++++++++.+-.+.|.||==...|++.-- =||+-.|.-.
T Consensus 136 ~~~~~Il~~HaPP~g-t~~d----~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG----~TivVNPG~~ 204 (226)
T COG2129 136 DNPVNILLTHAPPYG-TLLD----TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIG----NTIVVNPGPL 204 (226)
T ss_pred cCcceEEEecCCCCC-cccc----CCCC--ccccchHHHHHHHHHhCCceEEEeeecccccccccC----CeEEECCCCc
Confidence 110001112233332 1111 2333 123489999999999999999999865567776431 2667666543
Q ss_pred CCCCCeEEEEEEcCC
Q 001901 929 GTANNAGAILVLGRD 943 (998)
Q Consensus 929 ~~~~n~ga~l~~~~~ 943 (998)
+ .-..|++.+++.
T Consensus 205 ~--~g~yA~i~l~~~ 217 (226)
T COG2129 205 G--EGRYALIELEKE 217 (226)
T ss_pred c--CceEEEEEecCc
Confidence 2 235688888777
No 142
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=94.25 E-value=0.08 Score=54.32 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=28.0
Q ss_pred eEEEeccccCCCCCh--HH---HHHHHHHhhhcC-----CCcEEEeecCcccc
Q 001901 733 DYLFLGDYVDRGQHS--LE---TITLLLALKVEY-----PNNVHLIRGNHEAA 775 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s--~e---vl~ll~~lk~~~-----p~~v~llrGNHE~~ 775 (998)
.+|||||++|.+... .+ .+..+..+.... .-.+++|.||||..
T Consensus 48 ~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 48 VVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred EEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 699999999988743 22 232232322111 34699999999985
No 143
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.22 E-value=0.1 Score=52.18 Aligned_cols=68 Identities=18% Similarity=0.356 Sum_probs=49.3
Q ss_pred EEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCcc
Q 001901 701 KIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHE 773 (998)
Q Consensus 701 ~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 773 (998)
.|+||+||+++.+..-++...-. .+. ..-+|++||+..-.... +-+.-++.=+++.|--.|++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k--~gp--Fd~~ic~Gdff~~~~~~-~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKK--KGP--FDALLCVGDFFGDDEDD-EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcc--cCC--eeEEEEecCccCCccch-hhHHHHhcCCccCCCCEEEECCCCC
Confidence 48999999999998887775321 121 22588899999866555 3444444556678889999999998
No 144
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.10 E-value=1.2 Score=50.95 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=73.6
Q ss_pred ECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCC------ccc
Q 001901 236 VGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP------LAS 309 (998)
Q Consensus 236 ~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~------~~d 309 (998)
+.+.+|+..+.. ....+||..+. .=. ..+..+.+...- .++..+++||+.......... .-+
T Consensus 74 l~gskIv~~d~~------~~t~vyDt~t~--av~---~~P~l~~pk~~p-isv~VG~~LY~m~~~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 74 LHGSKIVAVDQS------GRTLVYDTDTR--AVA---TGPRLHSPKRCP-ISVSVGDKLYAMDRSPFPEPAGRPDFPCFE 141 (342)
T ss_pred ecCCeEEEEcCC------CCeEEEECCCC--eEe---ccCCCCCCCcce-EEEEeCCeEEEeeccCccccccCccceeEE
Confidence 333478888654 34789999887 333 333333334444 444458889999876433211 222
Q ss_pred EEEEec-----CCCCeEEEEECCCCCCCCcc-------eeEEEEE-CCEEEEE-cccCCCCCccccCCeEEEEECCCCeE
Q 001901 310 AYGLAK-----HRDGRWEWAIAPGVSPSPRY-------QHAAVFV-NARLHVS-GGALGGGRMVEDSSSVAVLDTAAGVW 375 (998)
Q Consensus 310 v~~~~~-----~~~~~W~w~~~~g~~P~pR~-------~hsav~~-~~~L~V~-GG~~~~~~~~~~~~dv~vyD~~t~~W 375 (998)
++.|.. .....|.|...++ +|..+. -.+-+++ +..|||. -|.. .-.|.||+++.+|
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~~~~W 211 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPP-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTESHEW 211 (342)
T ss_pred EeccccccccccCCCcceEEcCCC-CCccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcCCcce
Confidence 333332 3456899999876 344432 2344555 6678883 2211 2389999999999
Q ss_pred EEcccC
Q 001901 376 CDTKSV 381 (998)
Q Consensus 376 ~~v~~~ 381 (998)
+++..-
T Consensus 212 ~~~GdW 217 (342)
T PF07893_consen 212 RKHGDW 217 (342)
T ss_pred eeccce
Confidence 998655
No 145
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.42 E-value=0.17 Score=56.26 Aligned_cols=71 Identities=25% Similarity=0.270 Sum_probs=45.9
Q ss_pred CCeEEEecCCCCHHH--HHHHHHHcCCCCCCCCccceeEEEeccccCC-CCCh-HHHHHHHHHhhhcCCCcEEEeecCcc
Q 001901 698 APIKIFGDLHGQFGD--LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDR-GQHS-LETITLLLALKVEYPNNVHLIRGNHE 773 (998)
Q Consensus 698 ~~i~vvGDiHG~~~d--L~~il~~~g~~~~~~~~~~~~~vfLGDyVDR-G~~s-~evl~ll~~lk~~~p~~v~llrGNHE 773 (998)
.+|+-+.|+|-.... ..+.+........+ -+++.|||+|+ .+.. -.++..|..|+. |-.+|.+.||||
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~D------livltGD~~~~~~~~~~~~~~~~L~~L~~--~~gv~av~GNHd 116 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAIANELPD------LIVLTGDYVDGDRPPGVAALALFLAKLKA--PLGVFAVLGNHD 116 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHHHhcCCC------EEEEEeeeecCCCCCCHHHHHHHHHhhhc--cCCEEEEecccc
Confidence 458999999987554 22223222221112 68999999996 5444 445566666654 457999999998
Q ss_pred ccc
Q 001901 774 AAD 776 (998)
Q Consensus 774 ~~~ 776 (998)
...
T Consensus 117 ~~~ 119 (284)
T COG1408 117 YGV 119 (284)
T ss_pred ccc
Confidence 743
No 146
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=93.33 E-value=0.25 Score=52.78 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=46.1
Q ss_pred Ceeee-cCCeEEEecCCCCHHHH----------------HHHHHHc--CCCCCCCCccceeEEEeccccCCCCC-----h
Q 001901 692 SVLQL-KAPIKIFGDLHGQFGDL----------------MRLFDEY--GSPSTAGDIAYIDYLFLGDYVDRGQH-----S 747 (998)
Q Consensus 692 ~~l~~-~~~i~vvGDiHG~~~dL----------------~~il~~~--g~~~~~~~~~~~~~vfLGDyVDRG~~-----s 747 (998)
..+.+ ...+.||.|+|==|+.- .+.+..+ .+.+ + ++|+|||+-.-... .
T Consensus 13 ~~~~l~~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p-~------~lIilGD~KH~~~~~~~~e~ 85 (235)
T COG1407 13 GVLYLPLGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGP-K------RLIILGDLKHEFGKSLRQEK 85 (235)
T ss_pred ceeEeccCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCC-C------EEEEcCccccccCccccccH
Confidence 34444 47899999999544332 2222211 1111 1 79999999964433 3
Q ss_pred HHHHHHHHHhhhcCCCcEEEeecCccccch
Q 001901 748 LETITLLLALKVEYPNNVHLIRGNHEAADI 777 (998)
Q Consensus 748 ~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 777 (998)
.|+..++-.++.. .++++|||||...-
T Consensus 86 ~~~~~f~~~~~~~---evi~i~GNHD~~i~ 112 (235)
T COG1407 86 EEVREFLELLDER---EVIIIRGNHDNGIE 112 (235)
T ss_pred HHHHHHHHHhccC---cEEEEeccCCCccc
Confidence 5555555555443 59999999998443
No 147
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=92.74 E-value=0.2 Score=54.62 Aligned_cols=66 Identities=33% Similarity=0.353 Sum_probs=42.0
Q ss_pred CeEEEecCCCCH---------HHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChH-----HHHHHHHHhhhcCCCc
Q 001901 699 PIKIFGDLHGQF---------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-----ETITLLLALKVEYPNN 764 (998)
Q Consensus 699 ~i~vvGDiHG~~---------~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-----evl~ll~~lk~~~p~~ 764 (998)
.|+.++|+||.+ ..|.++++...-...+ .-+|..||+++....+- .++..|-++. -
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~-----~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g-----~ 71 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENEN-----TLLLDAGDNFDGSPPSTATKGEANIELMNALG-----Y 71 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCC-----eEEEeCCccCCCccchhccCCcHHHHHHHhcC-----C
Confidence 478899999887 4566666665432111 14577999999887643 4444444432 2
Q ss_pred EEEeecCccc
Q 001901 765 VHLIRGNHEA 774 (998)
Q Consensus 765 v~llrGNHE~ 774 (998)
.++..||||.
T Consensus 72 d~~~~GNHe~ 81 (252)
T cd00845 72 DAVTIGNHEF 81 (252)
T ss_pred CEEeeccccc
Confidence 3345699996
No 148
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.65 E-value=21 Score=43.08 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=60.9
Q ss_pred cEEEEECCCCc--EEEecCCC-CCCCCc-cceEEEEeC-CEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCC
Q 001901 151 DVHCYDVLTNK--WSRITPFG-EPPTPR-AAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP 225 (998)
Q Consensus 151 dv~~yD~~t~~--W~~l~~~g-~~P~pR-~~hsa~~~~-~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P 225 (998)
.++.+|..+.+ |+.-.... ....+. .....++.+ ++||+... ...++.+|..+....|+.-......+
T Consensus 72 ~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~~ 144 (488)
T cd00216 72 ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVALDAETGKQVWKFGNNDQVPP 144 (488)
T ss_pred cEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEEECCCCCEeeeecCCCCcCc
Confidence 67889988764 87643221 001111 112234445 67776432 24799999998766788643110000
Q ss_pred CCCcccEEEEECCcEEEEEcCCCCC----CCcccEEEEECCCCCceEEEcc
Q 001901 226 GPRYGHVMALVGQRYLMAIGGNDGK----RPLADVWALDTAAKPYEWRKLE 272 (998)
Q Consensus 226 ~~R~~hs~~~~~~~~Lyv~GG~~g~----~~lndv~~yD~~s~~~~W~~v~ 272 (998)
.-....+.++.++ .+| +|..++. .....++.||..+....|+.-.
T Consensus 145 ~~~i~ssP~v~~~-~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 145 GYTMTGAPTIVKK-LVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred ceEecCCCEEECC-EEE-EeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 0012233344554 444 4433222 2246799999999888897643
No 149
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.79 E-value=30 Score=42.12 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=61.8
Q ss_pred cEEEEECCCC--cEEEecCCCC--CC---CCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCC
Q 001901 151 DVHCYDVLTN--KWSRITPFGE--PP---TPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (998)
Q Consensus 151 dv~~yD~~t~--~W~~l~~~g~--~P---~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~ 223 (998)
.++.+|..+. .|+.-..... .+ ......+.++.+++||+... ...++.+|..+....|..-. +.
T Consensus 80 ~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~W~~~~--~~ 150 (527)
T TIGR03075 80 RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVVWSKKN--GD 150 (527)
T ss_pred cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEEeeccc--cc
Confidence 6888898875 4875432210 00 01122334556778776432 24699999998776787643 11
Q ss_pred CCCC-CcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEc
Q 001901 224 GPGP-RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKL 271 (998)
Q Consensus 224 ~P~~-R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v 271 (998)
.... ....+-++.++ .+|+.........-..+..||.++....|+.-
T Consensus 151 ~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 151 YKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 1111 12233345555 56664322222234579999999998788754
No 150
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=91.31 E-value=4.6 Score=46.25 Aligned_cols=111 Identities=19% Similarity=0.273 Sum_probs=67.4
Q ss_pred cEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCc----ccEEEE--E------cCCCCCceEEe
Q 001901 151 DVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSA----EDLHVL--D------LTQQRPRWHRV 218 (998)
Q Consensus 151 dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~----~dv~~~--D------l~t~t~~W~~l 218 (998)
.+.+||..+..-..++.+ +.+...-.++.++++||+........... ...+.+ + .....|.|..+
T Consensus 87 ~t~vyDt~t~av~~~P~l---~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~L 163 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPRL---HSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSL 163 (342)
T ss_pred CeEEEECCCCeEeccCCC---CCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcC
Confidence 467899999887765554 45555567778899999998753221110 033333 3 22345778888
Q ss_pred eecCCCCCCCcc-------cEEEEECCcEEEE-EcCCCCCCCcccEEEEECCCCCceEEEcccC
Q 001901 219 VVQGPGPGPRYG-------HVMALVGQRYLMA-IGGNDGKRPLADVWALDTAAKPYEWRKLEPE 274 (998)
Q Consensus 219 ~~~g~~P~~R~~-------hs~~~~~~~~Lyv-~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~ 274 (998)
+ +.|-.+.. .+-+++++..|+| .-|.. .-.+.||+.+. +|+++..-
T Consensus 164 P---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~--~W~~~GdW 217 (342)
T PF07893_consen 164 P---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESH--EWRKHGDW 217 (342)
T ss_pred C---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCc--ceeeccce
Confidence 6 44433332 2223344557777 33321 24799999999 99998543
No 151
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=91.29 E-value=0.23 Score=59.28 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHcCCc----EEEEcccccc--cceE-EecCCeEEEE---eccccccCCCCCeEEEEEEcCCceEEeEEec
Q 001901 883 GPDRVMEFCNNNDLQ----LIVRAHECVM--DGFE-RFAQGHLITL---FSATNYCGTANNAGAILVLGRDLVVVPKLIH 952 (998)
Q Consensus 883 g~~~~~~fl~~~~l~----~iiR~H~~~~--~G~~-~~~~~~~iTv---fSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~ 952 (998)
.++..++.|+..||+ .||-||.+|. .|=. ..++||++.| ||.. |..+.+ -|++-+|.+...+....-+
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TG-IAGYTLiyNS~gl~L~~H~ 584 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTG-IAGYTLIYNSYGLQLVAHQ 584 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccC-ccceEEEecCCcceeccCC
Confidence 577788899999998 9999999997 5643 4689999999 7754 443332 3455555454444444445
Q ss_pred cC
Q 001901 953 PL 954 (998)
Q Consensus 953 ~~ 954 (998)
|.
T Consensus 585 pF 586 (640)
T PF06874_consen 585 PF 586 (640)
T ss_pred CC
Confidence 43
No 152
>PRK05137 tolB translocation protein TolB; Provisional
Probab=90.32 E-value=45 Score=39.46 Aligned_cols=192 Identities=13% Similarity=0.069 Sum_probs=86.7
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeC-CEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC
Q 001901 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (998)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~-~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~ 227 (998)
...+|+.|.....=+.+.... .+ ..+-...-+ ++|++..-. . + ...+|++|+.+.. ...+. ..+..
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~---~~-v~~p~wSpDG~~lay~s~~-~-g--~~~i~~~dl~~g~--~~~l~---~~~g~ 247 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGS---SL-VLTPRFSPNRQEITYMSYA-N-G--RPRVYLLDLETGQ--RELVG---NFPGM 247 (435)
T ss_pred ceEEEEECCCCCCcEEEecCC---CC-eEeeEECCCCCEEEEEEec-C-C--CCEEEEEECCCCc--EEEee---cCCCc
Confidence 457888887654434443221 11 111111113 344443321 1 1 2579999998763 55554 22221
Q ss_pred CcccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCC
Q 001901 228 RYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP 306 (998)
Q Consensus 228 R~~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~ 306 (998)
-. +...- ++++|++....++ ..++|.+|+.+. ....+..... .........+++-++|..... +
T Consensus 248 ~~--~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~Lt~~~~-----~~~~~~~spDG~~i~f~s~~~-g-- 312 (435)
T PRK05137 248 TF--APRFSPDGRKVVMSLSQGG---NTDIYTMDLRSG--TTTRLTDSPA-----IDTSPSYSPDGSQIVFESDRS-G-- 312 (435)
T ss_pred cc--CcEECCCCCEEEEEEecCC---CceEEEEECCCC--ceEEccCCCC-----ccCceeEcCCCCEEEEEECCC-C--
Confidence 11 12222 2324544433333 258999999888 6666644221 111223334555444443211 1
Q ss_pred cccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcc
Q 001901 307 LASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTK 379 (998)
Q Consensus 307 ~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~ 379 (998)
...+|.++.... ..+..... ..+.......-+++.+++...... ...++++|+.+..+..+.
T Consensus 313 ~~~Iy~~d~~g~-~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~------~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 313 SPQLYVMNADGS-NPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG------QFSIGVMKPDGSGERILT 374 (435)
T ss_pred CCeEEEEECCCC-CeEEeecC----CCcccCeEECCCCCEEEEEEcCCC------ceEEEEEECCCCceEecc
Confidence 246777765432 22222111 111212222234544444332211 246899998777665543
No 153
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=89.98 E-value=0.39 Score=50.56 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=44.1
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChH-------------------------HHHH
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL-------------------------ETIT 752 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-------------------------evl~ 752 (998)
..|..+.|.||+++.|.++.+.+.-...+ -+||+||++-....+- |.|.
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D------~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPD------AVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-S------EEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCC------EEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 46899999999999999998876433222 6999999997554333 3344
Q ss_pred HHHHhhhcCCCcEEEeecCccccch
Q 001901 753 LLLALKVEYPNNVHLIRGNHEAADI 777 (998)
Q Consensus 753 ll~~lk~~~p~~v~llrGNHE~~~~ 777 (998)
-+|..--..+--+++|.||||....
T Consensus 80 ~ff~~L~~~~~p~~~vPG~~Dap~~ 104 (255)
T PF14582_consen 80 KFFRILGELGVPVFVVPGNMDAPER 104 (255)
T ss_dssp HHHHHHHCC-SEEEEE--TTS-SHH
T ss_pred HHHHHHHhcCCcEEEecCCCCchHH
Confidence 4444444556689999999998543
No 154
>PLN02533 probable purple acid phosphatase
Probab=89.69 E-value=0.48 Score=55.93 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCcEEEEccccccc
Q 001901 884 PDRVMEFCNNNDLQLIVRAHECVMD 908 (998)
Q Consensus 884 ~~~~~~fl~~~~l~~iiR~H~~~~~ 908 (998)
.+.++.+|+++++++++-||.-.-+
T Consensus 311 r~~le~Ll~~~~VdlvlsGH~H~Ye 335 (427)
T PLN02533 311 KESMETLLYKARVDLVFAGHVHAYE 335 (427)
T ss_pred HHHHHHHHHHhCCcEEEecceeccc
Confidence 4578889999999999999986533
No 155
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=89.39 E-value=1.5 Score=43.41 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=28.0
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccc
Q 001901 733 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAAD 776 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 776 (998)
.+.+|||+.-.-..--+..+++-+| +.+++|++||||--.
T Consensus 48 ~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~ 87 (186)
T COG4186 48 VLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCH 87 (186)
T ss_pred eEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCc
Confidence 6889999986544434444444443 688999999999743
No 156
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=88.84 E-value=62 Score=39.02 Aligned_cols=119 Identities=17% Similarity=0.179 Sum_probs=61.2
Q ss_pred cCCcEEEEECCCCc--EEEecCCCCCCC---------------CccceEEEEe--CCEEEEEeCCCC-----------CC
Q 001901 148 ATADVHCYDVLTNK--WSRITPFGEPPT---------------PRAAHVATAV--GTMVVIQGGIGP-----------AG 197 (998)
Q Consensus 148 ~~~dv~~yD~~t~~--W~~l~~~g~~P~---------------pR~~hsa~~~--~~~lyVfGG~~~-----------~~ 197 (998)
....++.||..|.+ |+.-.....+.. +....+.++. ++.||+-.|... ..
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 34678999998764 875432211111 1111222332 356666544220 12
Q ss_pred CCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEE-----ECCc--EEEEEcCCCCCCCcccEEEEECCCCCceEEE
Q 001901 198 LSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMAL-----VGQR--YLMAIGGNDGKRPLADVWALDTAAKPYEWRK 270 (998)
Q Consensus 198 ~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~-----~~~~--~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~ 270 (998)
...+.++.+|..+....|..-....+...-+.....++ +.+. .++++|..++ .++.||..+....|+.
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G-----~l~ald~~tG~~~W~~ 327 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNG-----FFYVLDRTTGKLISAR 327 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCc-----eEEEEECCCCcEeeEe
Confidence 23457999999998778986431111100011111111 1121 2445555443 5899999999888986
Q ss_pred c
Q 001901 271 L 271 (998)
Q Consensus 271 v 271 (998)
-
T Consensus 328 ~ 328 (488)
T cd00216 328 P 328 (488)
T ss_pred E
Confidence 4
No 157
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=88.59 E-value=0.67 Score=51.34 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=15.0
Q ss_pred HHHHHHH-cCCcEEEEccccc
Q 001901 887 VMEFCNN-NDLQLIVRAHECV 906 (998)
Q Consensus 887 ~~~fl~~-~~l~~iiR~H~~~ 906 (998)
..+++++ -++++||-||+-+
T Consensus 209 ~~~la~~~~~vD~IlgGHsH~ 229 (277)
T cd07410 209 AYELAEEVPGIDAILTGHQHR 229 (277)
T ss_pred HHHHHhcCCCCcEEEeCCCcc
Confidence 4566666 6899999999854
No 158
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=88.29 E-value=0.84 Score=52.54 Aligned_cols=57 Identities=32% Similarity=0.354 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCCCCCCccceeEEEeccccCCCCCh--HHHHHHHHHhhhcCCC----cEEEeecCccc
Q 001901 713 LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS--LETITLLLALKVEYPN----NVHLIRGNHEA 774 (998)
Q Consensus 713 L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s--~evl~ll~~lk~~~p~----~v~llrGNHE~ 774 (998)
|.+.|...-+....+ -.+|||||+|-|... -|--.....+|..|+. .++.+.||||-
T Consensus 81 lrr~f~~~~~~lkPd-----vvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 81 LRRSFDMSQWRLKPD-----VVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred HHHHHHHHHhccCCC-----EEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 455555543332221 578899999988753 4555666666666665 78999999997
No 159
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.18 E-value=32 Score=40.14 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=41.7
Q ss_pred EeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEEC
Q 001901 182 AVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDT 261 (998)
Q Consensus 182 ~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~ 261 (998)
..++.++++|+-+ .-+-.+|+.+. ..+....|..-.-|++... ..+ ++|++-||+|+. +-.||+
T Consensus 120 ~~d~t~l~s~sDd------~v~k~~d~s~a---~v~~~l~~htDYVR~g~~~-~~~-~hivvtGsYDg~-----vrl~Dt 183 (487)
T KOG0310|consen 120 PQDNTMLVSGSDD------KVVKYWDLSTA---YVQAELSGHTDYVRCGDIS-PAN-DHIVVTGSYDGK-----VRLWDT 183 (487)
T ss_pred ccCCeEEEecCCC------ceEEEEEcCCc---EEEEEecCCcceeEeeccc-cCC-CeEEEecCCCce-----EEEEEe
Confidence 3578999998742 23555677665 3344445554445554332 223 489999999984 556777
Q ss_pred CCCC
Q 001901 262 AAKP 265 (998)
Q Consensus 262 ~s~~ 265 (998)
.+.+
T Consensus 184 R~~~ 187 (487)
T KOG0310|consen 184 RSLT 187 (487)
T ss_pred ccCC
Confidence 6663
No 160
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=86.60 E-value=12 Score=43.99 Aligned_cols=189 Identities=19% Similarity=0.206 Sum_probs=98.4
Q ss_pred CeEEEecCCC-CH----HHHHHHHHHcCCCCCCCCccceeEEE-eccccCC-CC-----------ChHHHHHHHHHhhhc
Q 001901 699 PIKIFGDLHG-QF----GDLMRLFDEYGSPSTAGDIAYIDYLF-LGDYVDR-GQ-----------HSLETITLLLALKVE 760 (998)
Q Consensus 699 ~i~vvGDiHG-~~----~dL~~il~~~g~~~~~~~~~~~~~vf-LGDyVDR-G~-----------~s~evl~ll~~lk~~ 760 (998)
.+.+++|+|= .- +.+.++++.++-+.. --...+|+. -||.||- |- +-.|-...+-.+--.
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~--~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~ 304 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGD--LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQ 304 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcc--cccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhh
Confidence 4788999995 22 334444444443321 112336665 6799993 21 223334444444444
Q ss_pred CCC--cEEEeecCccccchhhhc-CChHHHHHHhCCCcchhhhhhhhhhhcccceeEEEc-CeEEEecCCccCcccCHHh
Q 001901 761 YPN--NVHLIRGNHEAADINALF-GFRIECIERMGERDGIWAWHRINRLFNWLPLAALIE-KKIICMHGGIGRSINHVEQ 836 (998)
Q Consensus 761 ~p~--~v~llrGNHE~~~~~~~~-gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~-~~il~vHgGi~~~~~~~~~ 836 (998)
-|. .|++..||||........ .|.......| ...+-.|=.=|...-++ ..+|..|| .+++|
T Consensus 305 vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf---------~~~n~~~v~NP~~~~l~G~~vL~~hG------~sidD 369 (481)
T COG1311 305 VPEHIKVFIMPGNHDAVRQALPQPHFPELIKSLF---------SLNNLLFVSNPALVSLHGVDVLIYHG------RSIDD 369 (481)
T ss_pred CCCCceEEEecCCCCccccccCCCCcchhhcccc---------cccceEecCCCcEEEECCEEEEEecC------CCHHH
Confidence 555 689999999986554332 3333322222 22221111114333333 46777887 35566
Q ss_pred hhhccCCcccCCCC-------------cceeccccCCCCCCCCCCCcccCCCCCCceeeCHHHHHHHHHHcCCcEEEEcc
Q 001901 837 IENLQRPITMEAGS-------------IVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAH 903 (998)
Q Consensus 837 i~~i~rp~~~~~~~-------------~~~~dlLWsDP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H 903 (998)
|...-.......-. ...-+-+|.-|...| +| ++++ --++++-||
T Consensus 370 ii~~vP~~~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD---------------~l---VIee-----vPDv~~~Gh 426 (481)
T COG1311 370 IIKLVPGADYDSPLKAMEELLKRRHLAPTYGGTLPIAPETKD---------------YL---VIEE-----VPDVFHTGH 426 (481)
T ss_pred HHhhCCCCCccchHHHHHHHHHhcccCCCCCCccccccCCcC---------------ce---eecc-----CCcEEEEcc
Confidence 54433222211100 123344555554321 01 0111 145678899
Q ss_pred cccccceEEecCCeEEEEecccccc
Q 001901 904 ECVMDGFERFAQGHLITLFSATNYC 928 (998)
Q Consensus 904 ~~~~~G~~~~~~~~~iTvfSa~~y~ 928 (998)
+.. .|+..+.+.++|..++-+.+.
T Consensus 427 vh~-~g~~~y~gv~~vns~T~q~qT 450 (481)
T COG1311 427 VHK-FGTGVYEGVNLVNSGTWQEQT 450 (481)
T ss_pred ccc-cceeEEeccceEEeeeecchh
Confidence 976 899998888898888877654
No 161
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=86.48 E-value=1.6 Score=50.85 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=34.2
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCC---CcEEEeecCccccch
Q 001901 733 DYLFLGDYVDRGQHSLETITLLLALKVEYP---NNVHLIRGNHEAADI 777 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~p---~~v~llrGNHE~~~~ 777 (998)
-+|+-||+.|+..-|.+++.++...-.+.- -.||+|.||||...-
T Consensus 43 ~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 43 FVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPSR 90 (390)
T ss_pred EEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchhc
Confidence 588899999999988888766555443332 279999999998643
No 162
>PRK03629 tolB translocation protein TolB; Provisional
Probab=85.08 E-value=89 Score=36.95 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=72.3
Q ss_pred ccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCC
Q 001901 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (998)
Q Consensus 201 ~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~ 279 (998)
..+|++|+.+.. -..+. ..+.. ......- ++++|++....++. .++|.+|+.+. +.+++.....
T Consensus 223 ~~i~i~dl~~G~--~~~l~---~~~~~--~~~~~~SPDG~~La~~~~~~g~---~~I~~~d~~tg--~~~~lt~~~~--- 287 (429)
T PRK03629 223 SALVIQTLANGA--VRQVA---SFPRH--NGAPAFSPDGSKLAFALSKTGS---LNLYVMDLASG--QIRQVTDGRS--- 287 (429)
T ss_pred cEEEEEECCCCC--eEEcc---CCCCC--cCCeEECCCCCEEEEEEcCCCC---cEEEEEECCCC--CEEEccCCCC---
Confidence 579999987752 33333 22211 1112222 33355554333332 36999999887 6666644321
Q ss_pred CccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCcc
Q 001901 280 PCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMV 359 (998)
Q Consensus 280 ~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~ 359 (998)
.........+++.++|...... ...+|.++.... ........+ .........-+++.+++.+....
T Consensus 288 --~~~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g-~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---- 353 (429)
T PRK03629 288 --NNTEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGG-APQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---- 353 (429)
T ss_pred --CcCceEECCCCCEEEEEeCCCC---CceEEEEECCCC-CeEEeecCC----CCccCEEECCCCCEEEEEEccCC----
Confidence 1122233345655555432211 236777765543 222221111 11111222234554444433221
Q ss_pred ccCCeEEEEECCCCeEEEccc
Q 001901 360 EDSSSVAVLDTAAGVWCDTKS 380 (998)
Q Consensus 360 ~~~~dv~vyD~~t~~W~~v~~ 380 (998)
...++++|+.+.+++.+..
T Consensus 354 --~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 354 --QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred --CceEEEEECCCCCeEEeCC
Confidence 2469999999999887663
No 163
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=84.16 E-value=2 Score=47.37 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCcEEEEccccc
Q 001901 884 PDRVMEFCNNNDLQLIVRAHECV 906 (998)
Q Consensus 884 ~~~~~~fl~~~~l~~iiR~H~~~ 906 (998)
...+.++++++++++++-||.-.
T Consensus 190 ~~~l~~l~~~~~v~~vl~GH~H~ 212 (277)
T cd07378 190 VDRLLPLLKKYKVDAYLSGHDHN 212 (277)
T ss_pred HHHHHHHHHHcCCCEEEeCCccc
Confidence 45678899999999999999754
No 164
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=83.82 E-value=48 Score=38.58 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=75.4
Q ss_pred CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCC
Q 001901 184 GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAA 263 (998)
Q Consensus 184 ~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s 263 (998)
|...++++|.. .=+|.||+.+. +-+++.+...++..-...-.+...+ .++++-|..| -++.+...|
T Consensus 269 G~~~i~~s~rr------ky~ysyDle~a--k~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G-----~I~lLhakT 334 (514)
T KOG2055|consen 269 GHSVIFTSGRR------KYLYSYDLETA--KVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNG-----HIHLLHAKT 334 (514)
T ss_pred CceEEEecccc------eEEEEeecccc--ccccccCCCCcccchhheeEecCCC-CeEEEcccCc-----eEEeehhhh
Confidence 34588888853 34889999886 4666653333332111111222333 4777777655 455666666
Q ss_pred CCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCC-eEEEEECCCCCCCCcceeE-EEE
Q 001901 264 KPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDG-RWEWAIAPGVSPSPRYQHA-AVF 341 (998)
Q Consensus 264 ~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~-~W~w~~~~g~~P~pR~~hs-av~ 341 (998)
. .|..---. ..+....+....+.+||+.||. ..+|.++...+. .-+|..-.+. .+-+ |..
T Consensus 335 ~--eli~s~Ki----eG~v~~~~fsSdsk~l~~~~~~-------GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S 396 (514)
T KOG2055|consen 335 K--ELITSFKI----EGVVSDFTFSSDSKELLASGGT-------GEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCIS 396 (514)
T ss_pred h--hhhheeee----ccEEeeEEEecCCcEEEEEcCC-------ceEEEEecCCcceEEEEeecCcc-----ceeeeeec
Confidence 6 55321111 1123333333445678888774 357777665542 2234443322 2222 334
Q ss_pred ECCEEEEEcccCCCCCccccCCeEEEEECCC
Q 001901 342 VNARLHVSGGALGGGRMVEDSSSVAVLDTAA 372 (998)
Q Consensus 342 ~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t 372 (998)
.++.++.+|... .-|-+||..+
T Consensus 397 ~ng~ylA~GS~~---------GiVNIYd~~s 418 (514)
T KOG2055|consen 397 LNGSYLATGSDS---------GIVNIYDGNS 418 (514)
T ss_pred CCCceEEeccCc---------ceEEEeccch
Confidence 566766666432 2366777544
No 165
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=82.92 E-value=1.8 Score=48.41 Aligned_cols=66 Identities=29% Similarity=0.364 Sum_probs=41.0
Q ss_pred CeEEEecCCCCHHH--------------HHHHHHHcCCCCCCCCccceeEEEeccccCCCCC-h-----HHHHHHHHHhh
Q 001901 699 PIKIFGDLHGQFGD--------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-S-----LETITLLLALK 758 (998)
Q Consensus 699 ~i~vvGDiHG~~~d--------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-s-----~evl~ll~~lk 758 (998)
.|+.+.|+||++.. |..+++....... ..-+|..||++...+. + -.++.+|-++.
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~-----~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g 76 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNP-----NSLFVSAGDLIGASPFESALLQDEPTIEALNAMG 76 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCC-----CeEEEeCCcccccccchhhcccCCcHHHHHHhhC
Confidence 47789999998653 5566666543211 1257779999986553 2 24455555553
Q ss_pred hcCCCcEEEeecCccc
Q 001901 759 VEYPNNVHLIRGNHEA 774 (998)
Q Consensus 759 ~~~p~~v~llrGNHE~ 774 (998)
. . .+..||||.
T Consensus 77 ~----D-a~t~GNHef 87 (288)
T cd07412 77 V----D-ASAVGNHEF 87 (288)
T ss_pred C----e-eeeeccccc
Confidence 2 2 455699996
No 166
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=82.73 E-value=38 Score=37.17 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=27.1
Q ss_pred EEEEcccccccceEEecC--CeEEEEeccccccCCCCCeEEEEEE-cCCceEEeE
Q 001901 898 LIVRAHECVMDGFERFAQ--GHLITLFSATNYCGTANNAGAILVL-GRDLVVVPK 949 (998)
Q Consensus 898 ~iiR~H~~~~~G~~~~~~--~~~iTvfSa~~y~~~~~n~ga~l~~-~~~~~~~~~ 949 (998)
.++-|||.. -|.+.+.+ ++-+.+.|.|.|.. .|.++++ =+++++.+.
T Consensus 206 Vyf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs~----t~~~vlvdl~tLe~~~v 255 (257)
T cd07387 206 VYFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFSK----TGTAVLVNLRTLECEPI 255 (257)
T ss_pred EEEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcCc----CCEEEEEECCcCcEEEE
Confidence 344678865 55555432 56677777788753 3444444 445666543
No 167
>PRK04792 tolB translocation protein TolB; Provisional
Probab=82.45 E-value=1.2e+02 Score=36.25 Aligned_cols=191 Identities=14% Similarity=0.126 Sum_probs=90.8
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeC-CEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC
Q 001901 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (998)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~-~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~ 227 (998)
...++..|.....-+.+.... .+ .......-+ ++|++.- .. .+ ..++|++|+.+.. -..+. ..+..
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~---~~-~~~p~wSPDG~~La~~s-~~-~g--~~~L~~~dl~tg~--~~~lt---~~~g~ 263 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSP---EP-LMSPAWSPDGRKLAYVS-FE-NR--KAEIFVQDIYTQV--REKVT---SFPGI 263 (448)
T ss_pred ceEEEEEeCCCCCceEeecCC---Cc-ccCceECCCCCEEEEEE-ec-CC--CcEEEEEECCCCC--eEEec---CCCCC
Confidence 346777777665555444331 11 111111123 3444332 11 11 2579999998753 44443 22211
Q ss_pred CcccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEec-cCCCCC
Q 001901 228 RYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGG-RDASSV 305 (998)
Q Consensus 228 R~~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG-~~~~~~ 305 (998)
......- ++++|++....++ ..++|.+|+.+. +.+++..... .........+++.++|.. .++
T Consensus 264 --~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg--~~~~lt~~~~-----~~~~p~wSpDG~~I~f~s~~~g--- 328 (448)
T PRK04792 264 --NGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATK--ALTRITRHRA-----IDTEPSWHPDGKSLIFTSERGG--- 328 (448)
T ss_pred --cCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCC--CeEECccCCC-----CccceEECCCCCEEEEEECCCC---
Confidence 1122222 3335655543333 258999999988 7777654321 111222333554444432 222
Q ss_pred CcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcc
Q 001901 306 PLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTK 379 (998)
Q Consensus 306 ~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~ 379 (998)
..++|.++.... .++.....+. .....+..-+++.+++.+.... ...++++|+.+.++..+.
T Consensus 329 -~~~Iy~~dl~~g-~~~~Lt~~g~----~~~~~~~SpDG~~l~~~~~~~g------~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 329 -KPQIYRVNLASG-KVSRLTFEGE----QNLGGSITPDGRSMIMVNRTNG------KFNIARQDLETGAMQVLT 390 (448)
T ss_pred -CceEEEEECCCC-CEEEEecCCC----CCcCeeECCCCCEEEEEEecCC------ceEEEEEECCCCCeEEcc
Confidence 246777776543 4443332221 1111122234544444433221 346999999999887664
No 168
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=80.80 E-value=2.8 Score=45.91 Aligned_cols=65 Identities=23% Similarity=0.223 Sum_probs=38.4
Q ss_pred CeEEEecCCCCHH----------HHHHHHHHcCCCCCCCCccceeEEEeccccCCCCCh-----HHHHHHHHHhhhcCCC
Q 001901 699 PIKIFGDLHGQFG----------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETITLLLALKVEYPN 763 (998)
Q Consensus 699 ~i~vvGDiHG~~~----------dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~p~ 763 (998)
.|+-+.|+||++. .|..+++...-.+ ..-+|..||+++..+.+ ..++..|-.+. -
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~------~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~ 71 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLD------NDLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----Y 71 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcC------CEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----C
Confidence 4677999999853 4556666653221 12577799999865533 22333333331 2
Q ss_pred cEEEeecCccc
Q 001901 764 NVHLIRGNHEA 774 (998)
Q Consensus 764 ~v~llrGNHE~ 774 (998)
.+ +..||||.
T Consensus 72 d~-~~~GNHef 81 (257)
T cd07408 72 DA-VTPGNHEF 81 (257)
T ss_pred cE-Eccccccc
Confidence 34 45699996
No 169
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.74 E-value=28 Score=38.72 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=64.8
Q ss_pred CcccEEEEECCCCCceEEEcccCCCCCCCccceEEEE-EeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECC--C
Q 001901 252 PLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASA-RSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAP--G 328 (998)
Q Consensus 252 ~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~-~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~--g 328 (998)
....+..||+.+. +|..+...-. ....+.. +.++.||+.|-.+........+-.|+.... +|+..... .
T Consensus 14 ~C~~lC~yd~~~~--qW~~~g~~i~-----G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~-~w~~~~~~~s~ 85 (281)
T PF12768_consen 14 PCPGLCLYDTDNS--QWSSPGNGIS-----GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ-TWSSLGGGSSN 85 (281)
T ss_pred CCCEEEEEECCCC--EeecCCCCce-----EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC-eeeecCCcccc
Confidence 3678999999999 9999866421 2223333 347788887765544423445566666655 55433331 1
Q ss_pred CCCCCcceeEEEEEC-CEEEEEcccCCCCCccccCCeEEEEECCCCeEEEccc
Q 001901 329 VSPSPRYQHAAVFVN-ARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 380 (998)
Q Consensus 329 ~~P~pR~~hsav~~~-~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~ 380 (998)
..|.+-........+ ..+++.|.. ..+ ..-+..| ...+|..+..
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~-~~g-----~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRS-ANG-----STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEecee-cCC-----CceEEEE--cCCceEeccc
Confidence 234443222222223 468877765 222 2346666 5679999887
No 170
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=79.31 E-value=84 Score=32.70 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=75.5
Q ss_pred EEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCC-CCCcccEEEEECC-cEEEEEcCCCCCCCcccE
Q 001901 179 VATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP-GPRYGHVMALVGQ-RYLMAIGGNDGKRPLADV 256 (998)
Q Consensus 179 sa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P-~~R~~hs~~~~~~-~~Lyv~GG~~g~~~lndv 256 (998)
+++...+++|+|-| +.+|+++.......-..+. ...| .+..=.++....+ +++|+|-| +..
T Consensus 11 A~~~~~g~~y~FkG--------~~~w~~~~~~~~~~p~~I~--~~w~~~p~~IDAa~~~~~~~~~yfFkg-------~~y 73 (194)
T cd00094 11 AVTTLRGELYFFKG--------RYFWRLSPGKPPGSPFLIS--SFWPSLPSPVDAAFERPDTGKIYFFKG-------DKY 73 (194)
T ss_pred eEEEeCCEEEEEeC--------CEEEEEeCCCCCCCCeEhh--hhCCCCCCCccEEEEECCCCEEEEECC-------CEE
Confidence 34445689999977 3578887652110111111 1112 1122223333332 58999977 478
Q ss_pred EEEECCCCCceEE---EcccCCCCCCCccceEEEEEe-CCEEEEEeccCCCCCCcccEEEEecCCCCeE----------E
Q 001901 257 WALDTAAKPYEWR---KLEPEGEGPPPCMYATASARS-DGLLLLCGGRDASSVPLASAYGLAKHRDGRW----------E 322 (998)
Q Consensus 257 ~~yD~~s~~~~W~---~v~~~~~~P~~r~~~~a~~~~-~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W----------~ 322 (998)
|+||..+. .+. .+...+.++.+..-.++.... ++++|+|.|. ..|.|+.... +. .
T Consensus 74 w~~~~~~~--~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~-~v~~~yP~~i~~~ 142 (194)
T cd00094 74 WVYTGKNL--EPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQ-KMDPGYPKLIETD 142 (194)
T ss_pred EEEcCccc--ccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCc-cccCCCCcchhhc
Confidence 88887642 221 111112211112233444443 6899999772 3455544322 00 1
Q ss_pred EEECCCCCCCCcceeEEEEEC-CEEEEEcccCCCCCccccCCeEEEEECCCCe
Q 001901 323 WAIAPGVSPSPRYQHAAVFVN-ARLHVSGGALGGGRMVEDSSSVAVLDTAAGV 374 (998)
Q Consensus 323 w~~~~g~~P~pR~~hsav~~~-~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~ 374 (998)
| .+ .+..-.++.... +++|.|-| +..|.||..+.+
T Consensus 143 w---~g---~p~~idaa~~~~~~~~yfF~g-----------~~y~~~d~~~~~ 178 (194)
T cd00094 143 F---PG---VPDKVDAAFRWLDGYYYFFKG-----------DQYWRFDPRSKE 178 (194)
T ss_pred C---CC---cCCCcceeEEeCCCcEEEEEC-----------CEEEEEeCccce
Confidence 1 11 122123333344 88999865 358999988776
No 171
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=79.14 E-value=1.3e+02 Score=34.86 Aligned_cols=147 Identities=19% Similarity=0.199 Sum_probs=72.5
Q ss_pred ccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCC
Q 001901 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (998)
Q Consensus 201 ~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~ 279 (998)
..++++|+.+.. ...+. ..+.... +.... +++.|++....++ ..++|.+|+.+. ....+......
T Consensus 214 ~~i~v~d~~~g~--~~~~~---~~~~~~~--~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~--~~~~l~~~~~~-- 279 (417)
T TIGR02800 214 PEIYVQDLATGQ--REKVA---SFPGMNG--APAFSPDGSKLAVSLSKDG---NPDIYVMDLDGK--QLTRLTNGPGI-- 279 (417)
T ss_pred cEEEEEECCCCC--EEEee---cCCCCcc--ceEECCCCCEEEEEECCCC---CccEEEEECCCC--CEEECCCCCCC--
Confidence 579999998753 44443 2221111 22222 2334655443332 258999999887 66666443211
Q ss_pred CccceEEEEEeCCE-EEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEE-ECCEEEEEcccCCCCC
Q 001901 280 PCMYATASARSDGL-LLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVF-VNARLHVSGGALGGGR 357 (998)
Q Consensus 280 ~r~~~~a~~~~~~~-lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~-~~~~L~V~GG~~~~~~ 357 (998)
........+++ |++.....+ ...+|.++.... .+......+ .......+ -+++.+++......
T Consensus 280 ---~~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~-~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~~-- 344 (417)
T TIGR02800 280 ---DTEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGG-EVRRLTFRG-----GYNASPSWSPDGDLIAFVHREGG-- 344 (417)
T ss_pred ---CCCEEECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEeecCC-----CCccCeEECCCCCEEEEEEccCC--
Confidence 11112223454 444433222 236777765543 333222211 11222222 35666666544321
Q ss_pred ccccCCeEEEEECCCCeEEEccc
Q 001901 358 MVEDSSSVAVLDTAAGVWCDTKS 380 (998)
Q Consensus 358 ~~~~~~dv~vyD~~t~~W~~v~~ 380 (998)
...++++|+.+..++.+..
T Consensus 345 ----~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 345 ----GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred ----ceEEEEEeCCCCCeEEccC
Confidence 3469999999977766543
No 172
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=78.96 E-value=1.3e+02 Score=34.65 Aligned_cols=158 Identities=15% Similarity=0.216 Sum_probs=86.8
Q ss_pred EEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEE
Q 001901 181 TAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALD 260 (998)
Q Consensus 181 ~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD 260 (998)
+..++++|+.-. ...++.+|..+....|...... ....-.+-....+++||+ |..++ .+++||
T Consensus 65 ~~~dg~v~~~~~-------~G~i~A~d~~~g~~~W~~~~~~----~~~~~~~~~~~~~G~i~~-g~~~g-----~~y~ld 127 (370)
T COG1520 65 ADGDGTVYVGTR-------DGNIFALNPDTGLVKWSYPLLG----AVAQLSGPILGSDGKIYV-GSWDG-----KLYALD 127 (370)
T ss_pred EeeCCeEEEecC-------CCcEEEEeCCCCcEEecccCcC----cceeccCceEEeCCeEEE-ecccc-----eEEEEE
Confidence 555678888711 1279999999876568765421 011111122222445544 44444 799999
Q ss_pred CCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCC-CCeEEEEECCCCCCCCcceeEE
Q 001901 261 TAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHR-DGRWEWAIAPGVSPSPRYQHAA 339 (998)
Q Consensus 261 ~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~-~~~W~w~~~~g~~P~pR~~hsa 339 (998)
..+.+..|..-... . .+...+.++.++.+|+.- ....++.++..+ ...|+.....+ . ..+...+.
T Consensus 128 ~~~G~~~W~~~~~~-~----~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~ 193 (370)
T COG1520 128 ASTGTLVWSRNVGG-S----PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-L-SLSIYGSP 193 (370)
T ss_pred CCCCcEEEEEecCC-C----eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-c-ccccccCc
Confidence 98887899987655 1 234445566677777653 123456665552 22455434332 1 22322233
Q ss_pred EEECCEEEEEcccCCCCCccccCCeEEEEECCCC--eEEE
Q 001901 340 VFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG--VWCD 377 (998)
Q Consensus 340 v~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~--~W~~ 377 (998)
+..++.+|+- ... . ...++.+|+++. .|..
T Consensus 194 ~~~~~~vy~~-~~~-~------~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 194 AIASGTVYVG-SDG-Y------DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred eeecceEEEe-cCC-C------cceEEEEEccCCcEeeee
Confidence 3555666654 221 0 125999999777 4764
No 173
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=78.48 E-value=4 Score=44.87 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=20.7
Q ss_pred EEEeccccCCCCChH-----HHHHHHHHhhhcCCCcEEEeecCccc
Q 001901 734 YLFLGDYVDRGQHSL-----ETITLLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 734 ~vfLGDyVDRG~~s~-----evl~ll~~lk~~~p~~v~llrGNHE~ 774 (998)
+|..||+++....+. .++.+|-.+ + --.+. ||||.
T Consensus 55 ~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g-~da~~-GNHef 94 (264)
T cd07411 55 LLDGGDTWQGSGEALYTRGQAMVDALNAL----G-VDAMV-GHWEF 94 (264)
T ss_pred EEeCCCccCCChHHhhcCChhHHHHHHhh----C-CeEEe-ccccc
Confidence 456899998765432 334444443 2 22334 99996
No 174
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=78.16 E-value=1.5e+02 Score=36.19 Aligned_cols=131 Identities=14% Similarity=0.087 Sum_probs=69.9
Q ss_pred EEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecC-C-CC---CCCcccEEEEECCcEEEEEcCCCCCCCcc
Q 001901 180 ATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQG-P-GP---GPRYGHVMALVGQRYLMAIGGNDGKRPLA 254 (998)
Q Consensus 180 a~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g-~-~P---~~R~~hs~~~~~~~~Lyv~GG~~g~~~ln 254 (998)
-++.++.||+.... ..++.+|..+....|+.-.... . .+ ........++.++ ++|+. ..+ .
T Consensus 65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~-~v~v~-t~d-----g 130 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDG-KVFFG-TLD-----A 130 (527)
T ss_pred CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECC-EEEEE-cCC-----C
Confidence 45668888886542 3699999998766798654110 0 01 0011122344454 66653 222 3
Q ss_pred cEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCC-CeEEEEECC
Q 001901 255 DVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRD-GRWEWAIAP 327 (998)
Q Consensus 255 dv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~-~~W~w~~~~ 327 (998)
.++++|..+....|+.-..... ......++-++.++++|+........ ....++.|+..+. -.|++...+
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~--~~~~~tssP~v~~g~Vivg~~~~~~~-~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYK--AGYTITAAPLVVKGKVITGISGGEFG-VRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred EEEEEECCCCCEEeeccccccc--ccccccCCcEEECCEEEEeecccccC-CCcEEEEEECCCCceeEeccCcC
Confidence 6899999999889986432111 00112223355688877753221111 2345666666432 246665554
No 175
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=75.17 E-value=40 Score=39.19 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=58.3
Q ss_pred cCCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC
Q 001901 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (998)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~ 227 (998)
...-+|.||+.+.+-.++.+....+.+-...-.+...+.++++-|.. .-++++...++ +|..-- .++..
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~--eli~s~---KieG~ 346 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTK--ELITSF---KIEGV 346 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhh--hhhhee---eeccE
Confidence 45578999999999999887654442222222233344455555532 24666666665 464332 23333
Q ss_pred CcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 228 R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
-...+... .++.||+.||. ..||+||+.++
T Consensus 347 v~~~~fsS-dsk~l~~~~~~------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 347 VSDFTFSS-DSKELLASGGT------GEVYVWNLRQN 376 (514)
T ss_pred EeeEEEec-CCcEEEEEcCC------ceEEEEecCCc
Confidence 33333332 33478888884 37999999887
No 176
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=74.32 E-value=5.3 Score=44.58 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=30.3
Q ss_pred eEEEeccccCCCCChH--------HHHHHHHHhhhcCCC-cEEEeecCccccchh
Q 001901 733 DYLFLGDYVDRGQHSL--------ETITLLLALKVEYPN-NVHLIRGNHEAADIN 778 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s~--------evl~ll~~lk~~~p~-~v~llrGNHE~~~~~ 778 (998)
-+||.||+|+.+.... ..-.+...|+..+|. .|+.+.||||....+
T Consensus 71 fii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~ 125 (296)
T cd00842 71 FILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVN 125 (296)
T ss_pred EEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCccc
Confidence 5888999998876431 122233345545554 699999999986543
No 177
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=73.74 E-value=3.6 Score=47.27 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=35.1
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccch
Q 001901 733 DYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 777 (998)
.+-.+||+-||||++-.+++-|..+ ..+-+-.||||..++
T Consensus 193 hLHiVGDIyDRGP~pd~Imd~L~~y-----hsvDiQWGNHDilWm 232 (648)
T COG3855 193 HLHIVGDIYDRGPYPDKIMDTLINY-----HSVDIQWGNHDILWM 232 (648)
T ss_pred heeeecccccCCCCchHHHHHHhhc-----ccccccccCcceEEe
Confidence 5778999999999999999999887 578889999997655
No 178
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=73.07 E-value=1.2e+02 Score=35.11 Aligned_cols=225 Identities=12% Similarity=0.085 Sum_probs=101.6
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEE-eCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCC
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQ-GGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVf-GG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R 228 (998)
..+|.+|+.+.+-++|.... .....+-..+.-++.+|.+ .+ ..++.+|+.+.. =+.+. ..|..-
T Consensus 60 ~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~~~~~Yv~~~--------~~l~~vdL~T~e--~~~vy---~~p~~~ 124 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDDRALYYVKNG--------RSLRRVDLDTLE--ERVVY---EVPDDW 124 (386)
T ss_dssp -EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETT--------TEEEEEETTT----EEEEE---E--TTE
T ss_pred cceEEEEcccCEEEECccCC--CCCccceEEecCCCeEEEEECC--------CeEEEEECCcCc--EEEEE---ECCccc
Confidence 47899999999999998641 1222332222223466544 33 368888888752 33443 334333
Q ss_pred cccEEEEECCcEEEEEcCC----CC--------------CCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEe
Q 001901 229 YGHVMALVGQRYLMAIGGN----DG--------------KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARS 290 (998)
Q Consensus 229 ~~hs~~~~~~~~Lyv~GG~----~g--------------~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~ 290 (998)
.+....+.+...-.++|=. +. ....+.+...|+.+. +.+.+-.... -..|.-..-.
T Consensus 125 ~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG--~~~~v~~~~~----wlgH~~fsP~ 198 (386)
T PF14583_consen 125 KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG--ERKVVFEDTD----WLGHVQFSPT 198 (386)
T ss_dssp EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-----EEEEEEETT
T ss_pred ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC--ceeEEEecCc----cccCcccCCC
Confidence 3322322221111222211 00 123567888899888 7766644332 2344444434
Q ss_pred CCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEEC
Q 001901 291 DGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDT 370 (998)
Q Consensus 291 ~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~ 370 (998)
+..+++|-=.+.....-..+|..+....+.|... ...+.-..+|---..+|..+.+=++...+. ..-+..||+
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~---~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~----~~~i~~~d~ 271 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH---RRMEGESVGHEFWVPDGSTIWYDSYTPGGQ----DFWIAGYDP 271 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------TTEEEEEEEE-TTSS-EEEEEEETTT------EEEEEE-T
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeee---cCCCCcccccccccCCCCEEEEEeecCCCC----ceEEEeeCC
Confidence 4555555211122212246888887666444422 222345566666666664333323322221 234888999
Q ss_pred CCCeEEEcccCcCCCCCCCCccccCCCCCccCCCCcceeEEEEECCEEEEEcCCC
Q 001901 371 AAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLR 425 (998)
Q Consensus 371 ~t~~W~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~~~~LyVfGG~~ 425 (998)
.|.+=+.+..+ +++.|-....+++|++--|.+
T Consensus 272 ~t~~~~~~~~~-----------------------p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEM-----------------------PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE------------------------SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeC-----------------------CceeeeEEcCCCCEEEecCCC
Confidence 99865555444 567888888899999876644
No 179
>PRK13684 Ycf48-like protein; Provisional
Probab=72.09 E-value=1.8e+02 Score=33.08 Aligned_cols=175 Identities=12% Similarity=0.218 Sum_probs=80.9
Q ss_pred CcEEEecCCCCCCCCccceEEEEeC-CEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECC
Q 001901 160 NKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQ 238 (998)
Q Consensus 160 ~~W~~l~~~g~~P~pR~~hsa~~~~-~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 238 (998)
.+|+++.... ..+........++ +.+++.|.. ..+++-+-... .|+.+.. +..-.-+.+....+
T Consensus 119 ~tW~~~~~~~--~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~--tW~~~~~----~~~g~~~~i~~~~~ 183 (334)
T PRK13684 119 KNWTRIPLSE--KLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGK--NWEALVE----DAAGVVRNLRRSPD 183 (334)
T ss_pred CCCeEccCCc--CCCCCceEEEEECCCcceeeecc-------ceEEEECCCCC--CceeCcC----CCcceEEEEEECCC
Confidence 4899885321 1122223344444 356665542 23444333333 4998752 22223344555555
Q ss_pred cEEEEEcCCCCCCCcccEEEE-ECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEe-cC
Q 001901 239 RYLMAIGGNDGKRPLADVWAL-DTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLA-KH 316 (998)
Q Consensus 239 ~~Lyv~GG~~g~~~lndv~~y-D~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~-~~ 316 (998)
+.+ +..|..| .++.. |.... +|+.+..... +.........++.+|++|.... ..+. ..
T Consensus 184 g~~-v~~g~~G-----~i~~s~~~gg~--tW~~~~~~~~----~~l~~i~~~~~g~~~~vg~~G~--------~~~~s~d 243 (334)
T PRK13684 184 GKY-VAVSSRG-----NFYSTWEPGQT--AWTPHQRNSS----RRLQSMGFQPDGNLWMLARGGQ--------IRFNDPD 243 (334)
T ss_pred CeE-EEEeCCc-----eEEEEcCCCCC--eEEEeeCCCc----ccceeeeEcCCCCEEEEecCCE--------EEEccCC
Confidence 434 4434333 23322 33334 7988754322 3334444456788888875321 2221 22
Q ss_pred CCCeEEEEECCCCCCCCcceeEEEEE-CCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEccc
Q 001901 317 RDGRWEWAIAPGVSPSPRYQHAAVFV-NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 380 (998)
Q Consensus 317 ~~~~W~w~~~~g~~P~pR~~hsav~~-~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~ 380 (998)
...+|+-...+... .....+++++. ++.+|++|.. ..++.-.....+|+.+..
T Consensus 244 ~G~sW~~~~~~~~~-~~~~l~~v~~~~~~~~~~~G~~----------G~v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 244 DLESWSKPIIPEIT-NGYGYLDLAYRTPGEIWAGGGN----------GTLLVSKDGGKTWEKDPV 297 (334)
T ss_pred CCCccccccCCccc-cccceeeEEEcCCCCEEEEcCC----------CeEEEeCCCCCCCeECCc
Confidence 22356643221110 11122334444 5678887752 124444445678988764
No 180
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=71.71 E-value=93 Score=36.35 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=48.4
Q ss_pred cCCcEEEEECCCCcEEEecCCCCCCCCccceEEEEe----CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCC
Q 001901 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV----GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (998)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~----~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~ 223 (998)
...++|++.+.++.--.+- -+++.+.+.+ +++++|-||.+ ..|.+|++..- -..-.. .
T Consensus 101 i~g~lYlWelssG~LL~v~-------~aHYQ~ITcL~fs~dgs~iiTgskD------g~V~vW~l~~l---v~a~~~--~ 162 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNVL-------SAHYQSITCLKFSDDGSHIITGSKD------GAVLVWLLTDL---VSADND--H 162 (476)
T ss_pred ccCcEEEEEeccccHHHHH-------HhhccceeEEEEeCCCcEEEecCCC------ccEEEEEEEee---cccccC--C
Confidence 4457888888876532221 1333444443 45888888863 34666665431 000110 1
Q ss_pred CCCCCc---ccEEEEECCcEEEE-EcCCCCCCC----cccEEEEECCCC
Q 001901 224 GPGPRY---GHVMALVGQRYLMA-IGGNDGKRP----LADVWALDTAAK 264 (998)
Q Consensus 224 ~P~~R~---~hs~~~~~~~~Lyv-~GG~~g~~~----lndv~~yD~~s~ 264 (998)
.|.|++ .|++.+. + |++ +||.+..-+ -..+-+||+...
T Consensus 163 ~~~p~~~f~~HtlsIT-D--l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSIT-D--LQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred CccceeeeccCcceeE-E--EEecCCCccceEEEecCCceEEEEEeccc
Confidence 233443 5666554 2 444 566544221 235667787766
No 181
>PRK04792 tolB translocation protein TolB; Provisional
Probab=71.14 E-value=2.3e+02 Score=33.75 Aligned_cols=142 Identities=17% Similarity=0.227 Sum_probs=72.2
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCc
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~ 229 (998)
.++|++|+.+.+-+.+... +..-...+..-.++.|++....+ + ..++|++|+.+. +...+... . . .
T Consensus 242 ~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~~La~~~~~~--g--~~~Iy~~dl~tg--~~~~lt~~---~-~-~ 307 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGKKLALVLSKD--G--QPEIYVVDIATK--ALTRITRH---R-A-I 307 (448)
T ss_pred cEEEEEECCCCCeEEecCC---CCCcCCeeECCCCCEEEEEEeCC--C--CeEEEEEECCCC--CeEECccC---C-C-C
Confidence 4799999998887776543 11111111111234565553321 1 257999999876 36655421 1 1 1
Q ss_pred ccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcc
Q 001901 230 GHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLA 308 (998)
Q Consensus 230 ~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~ 308 (998)
....+.. ++++|++....++. .++|.+|+.+. +++.+...+. .........+++.++|.+.... ..
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g~---~~Iy~~dl~~g--~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~~~~g---~~ 374 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGGK---PQIYRVNLASG--KVSRLTFEGE-----QNLGGSITPDGRSMIMVNRTNG---KF 374 (448)
T ss_pred ccceEECCCCCEEEEEECCCCC---ceEEEEECCCC--CEEEEecCCC-----CCcCeeECCCCCEEEEEEecCC---ce
Confidence 1112222 33345554433332 58999999888 7877753221 1112233445555555443322 24
Q ss_pred cEEEEecCCC
Q 001901 309 SAYGLAKHRD 318 (998)
Q Consensus 309 dv~~~~~~~~ 318 (998)
.+|.++....
T Consensus 375 ~I~~~dl~~g 384 (448)
T PRK04792 375 NIARQDLETG 384 (448)
T ss_pred EEEEEECCCC
Confidence 5777765543
No 182
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=71.11 E-value=1.6e+02 Score=32.11 Aligned_cols=159 Identities=16% Similarity=0.069 Sum_probs=82.5
Q ss_pred CCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCc-eEEeeecCCC---CCCCcccEE---EEECCcEEEEE
Q 001901 172 PTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPR-WHRVVVQGPG---PGPRYGHVM---ALVGQRYLMAI 244 (998)
Q Consensus 172 P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~-W~~l~~~g~~---P~~R~~hs~---~~~~~~~Lyv~ 244 (998)
|.+-.+-+.+++++.+|.--. ..+++.+||+.+.... |..++-.+.. |-...+++- ++-.+ -|+|+
T Consensus 66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~-GLWvI 138 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDEN-GLWVI 138 (250)
T ss_pred eceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCC-CEEEE
Confidence 445556666777776666533 3478999999997533 4444422111 111112222 22233 47777
Q ss_pred cCCCCCCCcccEEEEECCCCC--ceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEE
Q 001901 245 GGNDGKRPLADVWALDTAAKP--YEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWE 322 (998)
Q Consensus 245 GG~~g~~~lndv~~yD~~s~~--~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~ 322 (998)
-......-.--+-++|+.+.. -+|..--. +.....+.+.-|.||+....+... ..-.+.||..++ +
T Consensus 139 Yat~~~~g~ivvskld~~tL~v~~tw~T~~~-------k~~~~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~---~ 206 (250)
T PF02191_consen 139 YATEDNNGNIVVSKLDPETLSVEQTWNTSYP-------KRSAGNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTG---K 206 (250)
T ss_pred EecCCCCCcEEEEeeCcccCceEEEEEeccC-------chhhcceeeEeeEEEEEEECCCCC--cEEEEEEECCCC---c
Confidence 554433222345567776553 25654211 233444556678999987665443 233456666654 2
Q ss_pred EEECCCCCCCCcceeEEEEEC---CEEEEE
Q 001901 323 WAIAPGVSPSPRYQHAAVFVN---ARLHVS 349 (998)
Q Consensus 323 w~~~~g~~P~pR~~hsav~~~---~~L~V~ 349 (998)
...+.-..+.+-..++++.++ .+||+.
T Consensus 207 ~~~~~i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 207 EEDVSIPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred eeceeeeeccccCceEeeeECCCCCeEEEE
Confidence 222221122333455555553 578887
No 183
>PRK04922 tolB translocation protein TolB; Provisional
Probab=68.23 E-value=2.5e+02 Score=33.10 Aligned_cols=147 Identities=19% Similarity=0.239 Sum_probs=71.1
Q ss_pred ccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCC
Q 001901 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP 280 (998)
Q Consensus 201 ~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~ 280 (998)
..+|++|+.+.. ...+. ..+.. .......-++++|++....++. .++|.+|+.+. ...++.....
T Consensus 228 ~~l~~~dl~~g~--~~~l~---~~~g~-~~~~~~SpDG~~l~~~~s~~g~---~~Iy~~d~~~g--~~~~lt~~~~---- 292 (433)
T PRK04922 228 SAIYVQDLATGQ--RELVA---SFRGI-NGAPSFSPDGRRLALTLSRDGN---PEIYVMDLGSR--QLTRLTNHFG---- 292 (433)
T ss_pred cEEEEEECCCCC--EEEec---cCCCC-ccCceECCCCCEEEEEEeCCCC---ceEEEEECCCC--CeEECccCCC----
Confidence 579999998753 44443 22211 1111111123355544333332 58999999888 6556543211
Q ss_pred ccceEEEEEeCCEEEEEec-cCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEE-ECC-EEEEEcccCCCCC
Q 001901 281 CMYATASARSDGLLLLCGG-RDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVF-VNA-RLHVSGGALGGGR 357 (998)
Q Consensus 281 r~~~~a~~~~~~~lyvfGG-~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~-~~~-~L~V~GG~~~~~~ 357 (998)
.........+++-++|.. ..+ ..++|.++.... .++.....+ .+.....+ -++ .|++..+ .+.
T Consensus 293 -~~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~-~~~-- 358 (433)
T PRK04922 293 -IDTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGG-SAERLTFQG-----NYNARASVSPDGKKIAMVHG-SGG-- 358 (433)
T ss_pred -CccceEECCCCCEEEEEECCCC----CceEEEEECCCC-CeEEeecCC-----CCccCEEECCCCCEEEEEEC-CCC--
Confidence 111223344555444443 221 235777765433 333332221 11222222 244 4444433 211
Q ss_pred ccccCCeEEEEECCCCeEEEccc
Q 001901 358 MVEDSSSVAVLDTAAGVWCDTKS 380 (998)
Q Consensus 358 ~~~~~~dv~vyD~~t~~W~~v~~ 380 (998)
...++++|+.+.+++.+..
T Consensus 359 ----~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 359 ----QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred ----ceeEEEEECCCCCeEECCC
Confidence 2369999999998876643
No 184
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=68.22 E-value=11 Score=38.47 Aligned_cols=79 Identities=23% Similarity=0.236 Sum_probs=46.1
Q ss_pred eEEEecccc--CCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHHHHHHhCCCcchhhhhhhhhhhccc
Q 001901 733 DYLFLGDYV--DRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWL 810 (998)
Q Consensus 733 ~~vfLGDyV--DRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~L 810 (998)
.++.-||+- -|=+...+=+.+|-+| |..-++||||||...-.. ..+...+.. .....++.|+.+
T Consensus 46 iVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw~s~-----skl~n~lp~-----~l~~~n~~f~l~ 111 (230)
T COG1768 46 IVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWWSSI-----SKLNNALPP-----ILFYLNNGFELL 111 (230)
T ss_pred EEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCccccchH-----HHHHhhcCc-----hHhhhccceeEe
Confidence 466678875 3555566667777665 789999999999854311 112222221 234556777766
Q ss_pred ceeEEEcCeEEEecCCccCcc
Q 001901 811 PLAALIEKKIICMHGGIGRSI 831 (998)
Q Consensus 811 P~aa~i~~~il~vHgGi~~~~ 831 (998)
-+| +++ +-|=+++++
T Consensus 112 n~a-I~G-----~RgW~s~~~ 126 (230)
T COG1768 112 NYA-IVG-----VRGWDSPSF 126 (230)
T ss_pred eEE-EEE-----eecccCCCC
Confidence 643 333 445555544
No 185
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=68.17 E-value=7.8 Score=51.83 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=39.2
Q ss_pred CeEEEecCCCCHH---HHHHHHHHcCCCCCCCCccceeEEEeccccCCCCCh-----HHHHHHHHHhhhcCCCcEEEeec
Q 001901 699 PIKIFGDLHGQFG---DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETITLLLALKVEYPNNVHLIRG 770 (998)
Q Consensus 699 ~i~vvGDiHG~~~---dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~p~~v~llrG 770 (998)
.|+.+.|+||.+. .+..+++........ .-+|..||+++....+ ..++.+|-.+ .--++..|
T Consensus 662 ~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~l-----g~d~~~~G 731 (1163)
T PRK09419 662 TILHTNDFHGHLDGAAKRVTKIKEVKEENPN-----TILVDAGDVYQGSLYSNLLKGLPVLKMMKEM-----GYDASTFG 731 (1163)
T ss_pred EEEEEeecccCCCCHHHHHHHHHHHHhhCCC-----eEEEecCCCCCCcchhhhcCChHHHHHHhCc-----CCCEEEec
Confidence 4788999999864 444445443211111 1234479999977644 2345554444 23356899
Q ss_pred Cccc
Q 001901 771 NHEA 774 (998)
Q Consensus 771 NHE~ 774 (998)
|||.
T Consensus 732 NHEf 735 (1163)
T PRK09419 732 NHEF 735 (1163)
T ss_pred cccc
Confidence 9997
No 186
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=68.04 E-value=11 Score=34.66 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhCCCCCCCCCccccccCHHHHHHHHHHHHHHHhcCCCeeee
Q 001901 646 SVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQL 696 (998)
Q Consensus 646 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ep~~l~~ 696 (998)
++++.+|+.+-+.+ .|....+..|+.++.++|+++|++++|
T Consensus 55 efv~~mie~FK~~K----------~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 55 EFVKAMIEWFKNQK----------KLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp HHHHHHHHHHHCT--------------HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred HHHHHHHHHHHhCC----------CccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 56788888876543 467888999999999999999999985
No 187
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=67.36 E-value=1.6e+02 Score=30.57 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=54.3
Q ss_pred CEEEEEeCCCCCCCCcccEEEEEcCCCCCceE-EeeecCCCCC--CCcccEEEEEC-CcEEEEEcCCCCCCCcccEEEEE
Q 001901 185 TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWH-RVVVQGPGPG--PRYGHVMALVG-QRYLMAIGGNDGKRPLADVWALD 260 (998)
Q Consensus 185 ~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~-~l~~~g~~P~--~R~~hs~~~~~-~~~Lyv~GG~~g~~~lndv~~yD 260 (998)
+++|+|=| +.+|+|+..+.....- .+... ..|. .... ++.... ++++|+|.| +..|+||
T Consensus 63 ~~~yfFkg--------~~yw~~~~~~~~~~~Pk~i~~~-~~~~~~~~iD-AA~~~~~~~~~yfFkg-------~~y~ry~ 125 (194)
T cd00094 63 GKIYFFKG--------DKYWVYTGKNLEPGYPKPISDL-GFPPTVKQID-AALRWPDNGKTYFFKG-------DKYWRYD 125 (194)
T ss_pred CEEEEECC--------CEEEEEcCcccccCCCcchhhc-CCCCCCCCcc-EEEEEcCCCEEEEEeC-------CEEEEEe
Confidence 68999976 3688888664210111 11110 1121 2222 333343 458999988 5788999
Q ss_pred CCCCCceEEE-----cccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCC
Q 001901 261 TAAKPYEWRK-----LEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRD 318 (998)
Q Consensus 261 ~~s~~~~W~~-----v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~ 318 (998)
..+. +... +...-.. .+....++....++++|+|-| +..|.|+....
T Consensus 126 ~~~~--~v~~~yP~~i~~~w~g-~p~~idaa~~~~~~~~yfF~g--------~~y~~~d~~~~ 177 (194)
T cd00094 126 EKTQ--KMDPGYPKLIETDFPG-VPDKVDAAFRWLDGYYYFFKG--------DQYWRFDPRSK 177 (194)
T ss_pred CCCc--cccCCCCcchhhcCCC-cCCCcceeEEeCCCcEEEEEC--------CEEEEEeCccc
Confidence 8665 2210 1100000 111233444444589999976 35677766543
No 188
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=67.25 E-value=2.9e+02 Score=35.37 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=25.8
Q ss_pred eEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEee
Q 001901 178 HVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVV 219 (998)
Q Consensus 178 hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~ 219 (998)
.+-.++++.||+.... +.++.+|..+....|+.-.
T Consensus 188 ~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDP 222 (764)
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcC
Confidence 4456678999998542 5689999988766788654
No 189
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=67.05 E-value=88 Score=36.30 Aligned_cols=184 Identities=18% Similarity=0.222 Sum_probs=101.8
Q ss_pred cCCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC
Q 001901 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (998)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~ 227 (998)
.++++|++|-.-+---++...+ |..|-. ++-.+++.+|+.-= ..++-+++.|+.+-. ...+.|.+..|
T Consensus 404 ~~N~vYilDe~lnvvGkltGl~--~gERIY-AvRf~gdv~yiVTf-----rqtDPlfviDlsNPe----nPkvlGeLKIP 471 (603)
T COG4880 404 PVNAVYILDENLNVVGKLTGLA--PGERIY-AVRFVGDVLYIVTF-----RQTDPLFVIDLSNPE----NPKVLGELKIP 471 (603)
T ss_pred ccceeEEEcCCCcEEEEEeccC--CCceEE-EEEEeCceEEEEEE-----eccCceEEEEcCCCC----CCceeEEEecC
Confidence 7899999998888777776653 566654 55566887777642 235678999998732 23334555555
Q ss_pred CcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCC-----------ceEEEcccCCCCCCCccceEEEEEeCC-EEE
Q 001901 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKP-----------YEWRKLEPEGEGPPPCMYATASARSDG-LLL 295 (998)
Q Consensus 228 R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~-----------~~W~~v~~~~~~P~~r~~~~a~~~~~~-~ly 295 (998)
-+..-.--++++.++=+|-.+|+- .+..||+.... --|+. .-+.|+|...... .|+
T Consensus 472 GfS~YLHpigen~~lGvG~~~g~v---KiSLFdiSdl~~PkEv~~y~l~~~wsp---------vf~dhHAFl~d~~~~if 539 (603)
T COG4880 472 GFSEYLHPIGENRLLGVGAYQGGV---KISLFDISDLAAPKEVSNYTLSNAWSP---------VFYDHHAFLYDPEAEIF 539 (603)
T ss_pred CchhhccccCCCcEEEeecccCCc---eEEEEeccCCCCchhhhheehhhhcch---------hhhccceeecCCcccEE
Confidence 554444456666666677666543 45556654321 02322 2355666655322 233
Q ss_pred EEeccCCCCCCcccEEEEecCCCCeEEEEECC-CCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCe
Q 001901 296 LCGGRDASSVPLASAYGLAKHRDGRWEWAIAP-GVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGV 374 (998)
Q Consensus 296 vfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~-g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~ 374 (998)
..= .....+.|....+- +..... -..+. --+.++++.+|++|| +.+|+|| .+.
T Consensus 540 FlP-------ay~~gyif~iedg~--kl~k~~e~k~na----~RA~fi~dylY~vg~-----------~ev~~ld--ens 593 (603)
T COG4880 540 FLP-------AYLGGYIFFIEDGS--KLRKRAERKLNA----DRAFFIKDYLYLVGG-----------NEVWKLD--ENS 593 (603)
T ss_pred Eec-------ccCccEEEEEecCc--eeeehhhhcccc----eeeEEecceEEEecc-----------ceeEEec--cch
Confidence 221 12222333322220 111110 00111 125678999999997 4589887 456
Q ss_pred EEEcccC
Q 001901 375 WCDTKSV 381 (998)
Q Consensus 375 W~~v~~~ 381 (998)
|..++..
T Consensus 594 we~Vge~ 600 (603)
T COG4880 594 WEVVGEA 600 (603)
T ss_pred Hhhhhhe
Confidence 7766543
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=66.97 E-value=1.6e+02 Score=31.87 Aligned_cols=157 Identities=22% Similarity=0.332 Sum_probs=83.1
Q ss_pred CCcEEEecCCC--CCCCCccceEEEEe--CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEE
Q 001901 159 TNKWSRITPFG--EPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMA 234 (998)
Q Consensus 159 t~~W~~l~~~g--~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~ 234 (998)
...|+...++- ..+.|-.. ++-+. .|.|+..||. ..+|..|+++.+ .++.- .| ..-|-|+++
T Consensus 98 K~lwe~~~P~~~~~~evPeIN-am~ldP~enSi~~AgGD-------~~~y~~dlE~G~--i~r~~-rG---HtDYvH~vv 163 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEIN-AMWLDPSENSILFAGGD-------GVIYQVDLEDGR--IQREY-RG---HTDYVHSVV 163 (325)
T ss_pred hhhhhhcCccccCcccCCccc-eeEeccCCCcEEEecCC-------eEEEEEEecCCE--EEEEE-cC---Ccceeeeee
Confidence 34577766652 22333322 33333 5688888884 468999999863 44332 22 345677777
Q ss_pred EECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEc-ccCCCCCCCcc--ce--EEEEEeCCEEEEEeccCCCCCCccc
Q 001901 235 LVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKL-EPEGEGPPPCM--YA--TASARSDGLLLLCGGRDASSVPLAS 309 (998)
Q Consensus 235 ~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v-~~~~~~P~~r~--~~--~a~~~~~~~lyvfGG~~~~~~~~~d 309 (998)
.-+..-=++-|+.|| .+-.+|+++. +-.++ .+... |.--| .. .+++..+..-+++||. +...
T Consensus 164 ~R~~~~qilsG~EDG-----tvRvWd~kt~--k~v~~ie~yk~-~~~lRp~~g~wigala~~edWlvCGgG-----p~ls 230 (325)
T KOG0649|consen 164 GRNANGQILSGAEDG-----TVRVWDTKTQ--KHVSMIEPYKN-PNLLRPDWGKWIGALAVNEDWLVCGGG-----PKLS 230 (325)
T ss_pred ecccCcceeecCCCc-----cEEEEecccc--ceeEEeccccC-hhhcCcccCceeEEEeccCceEEecCC-----Ccee
Confidence 644434566677776 4567788777 54443 33222 11111 11 2344445666677764 2344
Q ss_pred EEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEc
Q 001901 310 AYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSG 350 (998)
Q Consensus 310 v~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~G 350 (998)
+|.+..... + . ..|.|-..|-+.++++.+++.|
T Consensus 231 lwhLrsse~---t--~---vfpipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 231 LWHLRSSES---T--C---VFPIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred EEeccCCCc---e--E---EEecccceeEeeeecceEEEec
Confidence 565543322 1 1 1134444455666666666655
No 191
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=65.92 E-value=1.9e+02 Score=30.98 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=47.5
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEe--CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~ 227 (998)
+.+++||+.+.+....-..+ ..+ +..+.. ++.+|+.++. ...+++||+.+.. ....+ +..
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~-~~~~~------~~~ 114 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANED------DNLVTVIDIETRK-VLAEI------PVG 114 (300)
T ss_pred CeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCe-EEeEe------eCC
Confidence 36888999887765432221 122 122332 3366666542 2468999998742 11112 111
Q ss_pred CcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 228 R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
..-++++...++.+++++..++ +.+..||..+.
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~ 147 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTY 147 (300)
T ss_pred CCcceEEECCCCCEEEEEecCC----CeEEEEeCCCC
Confidence 1223444444445666665432 24566788665
No 192
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=65.45 E-value=2.6e+02 Score=32.33 Aligned_cols=141 Identities=17% Similarity=0.218 Sum_probs=72.0
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCc
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~ 229 (998)
..++++|+.+.....+... +......+...-++.|++..... -..++|++|+.+.. ...+.... ..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~---~~~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~--~~~l~~~~---~~-- 279 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF---PGMNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQ--LTRLTNGP---GI-- 279 (417)
T ss_pred cEEEEEECCCCCEEEeecC---CCCccceEECCCCCEEEEEECCC----CCccEEEEECCCCC--EEECCCCC---CC--
Confidence 5799999998877766543 11111111111133565544321 12579999998752 55554211 11
Q ss_pred ccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcc
Q 001901 230 GHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLA 308 (998)
Q Consensus 230 ~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~ 308 (998)
....... .+++|++.....+ ...+|.+|+.+. .+..+..... .........+++.+++..... ...
T Consensus 280 ~~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~--~~~~l~~~~~-----~~~~~~~spdg~~i~~~~~~~---~~~ 346 (417)
T TIGR02800 280 DTEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGG--EVRRLTFRGG-----YNASPSWSPDGDLIAFVHREG---GGF 346 (417)
T ss_pred CCCEEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEeecCCC-----CccCeEECCCCCEEEEEEccC---Cce
Confidence 1111122 3334544433332 247999999887 7776654322 222233344666666665443 124
Q ss_pred cEEEEecCC
Q 001901 309 SAYGLAKHR 317 (998)
Q Consensus 309 dv~~~~~~~ 317 (998)
.++.++...
T Consensus 347 ~i~~~d~~~ 355 (417)
T TIGR02800 347 NIAVMDLDG 355 (417)
T ss_pred EEEEEeCCC
Confidence 567776654
No 193
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=65.06 E-value=14 Score=41.11 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=36.1
Q ss_pred CeEEEecCCCCH---------------------HHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCCh-----HHHHH
Q 001901 699 PIKIFGDLHGQF---------------------GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-----LETIT 752 (998)
Q Consensus 699 ~i~vvGDiHG~~---------------------~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ 752 (998)
.|+-+.|+||++ ..+..+++....... ..-+|..||+++..+.+ ..++.
T Consensus 2 ~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~-----~~l~ld~GD~~~gs~~~~~~~g~~~~~ 76 (281)
T cd07409 2 TILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENP-----NVLFLNAGDAFQGTLWYTLYKGNADAE 76 (281)
T ss_pred EEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCC-----CEEEEeCCCCCCCcchhhhcCChHHHH
Confidence 367789999875 334445555432111 11355589999876532 23333
Q ss_pred HHHHhhhcCCCcEEEeecCccc
Q 001901 753 LLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 753 ll~~lk~~~p~~v~llrGNHE~ 774 (998)
.|-.+. -.+ +..||||.
T Consensus 77 ~ln~~g----~D~-~~lGNHef 93 (281)
T cd07409 77 FMNLLG----YDA-MTLGNHEF 93 (281)
T ss_pred HHHhcC----CCE-EEeccccc
Confidence 333332 133 44599997
No 194
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=64.57 E-value=62 Score=31.15 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=53.4
Q ss_pred EEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCC
Q 001901 240 YLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDG 319 (998)
Q Consensus 240 ~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~ 319 (998)
.+|...-. .....+.+.+||+.+. +|+.+... ..+.........+..+|+|-++.-........-++|.+.+....
T Consensus 7 vly~~a~~-~~~~~~~IvsFDv~~E--~f~~i~~P-~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~ 82 (129)
T PF08268_consen 7 VLYWLAWS-EDSDNNVIVSFDVRSE--KFRFIKLP-EDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQ 82 (129)
T ss_pred EEEeEEEE-CCCCCcEEEEEEcCCc--eEEEEEee-eeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccc
Confidence 56665544 3334578999999999 88777543 11222344455566788888875543332345789999888778
Q ss_pred eEEEEEC
Q 001901 320 RWEWAIA 326 (998)
Q Consensus 320 ~W~w~~~ 326 (998)
.|.....
T Consensus 83 ~Wsk~~~ 89 (129)
T PF08268_consen 83 EWSKKHI 89 (129)
T ss_pred eEEEEEE
Confidence 8885544
No 195
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=62.13 E-value=1.2e+02 Score=34.52 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=60.1
Q ss_pred cCCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeC-CEEEEEeCC---CCCCCCcccEEEEEcCCCCCceEEeeecCC
Q 001901 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGI---GPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (998)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~-~~lyVfGG~---~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~ 223 (998)
.+..+++||..+++-.-.- +..-.++.+..-+ ..+|+..=+ ...+..++-+.+||..+..+++...-
T Consensus 15 ~~~rv~viD~d~~k~lGmi-----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i---- 85 (342)
T PF06433_consen 15 MTSRVYVIDADSGKLLGMI-----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI---- 85 (342)
T ss_dssp SSEEEEEEETTTTEEEEEE-----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE----
T ss_pred ccceEEEEECCCCcEEEEe-----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec----
Confidence 3468999999988754332 3334455443333 367765532 23345677888999999766676544
Q ss_pred CCC-CCcc-----cEEE-EECCcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 224 GPG-PRYG-----HVMA-LVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 224 ~P~-~R~~-----hs~~-~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
|. +|.. +... .-+++++||+- -.....|-+.|+...
T Consensus 86 -P~k~R~~~~~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~ 128 (342)
T PF06433_consen 86 -PPKPRAQVVPYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAK 128 (342)
T ss_dssp -TTS-B--BS--GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTT
T ss_pred -CCcchheecccccceEEccCCcEEEEEc----cCCCCeEEEEECCCC
Confidence 32 2442 2222 23555777753 234568888999888
No 196
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=61.63 E-value=12 Score=42.03 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=46.0
Q ss_pred CCeEEEecCCCCHHHHHHHHHHc---CCCCCCCCccceeEEEeccccC-CCCC---hHHH---------HHHHHHhhhcC
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEY---GSPSTAGDIAYIDYLFLGDYVD-RGQH---SLET---------ITLLLALKVEY 761 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~---g~~~~~~~~~~~~~vfLGDyVD-RG~~---s~ev---------l~ll~~lk~~~ 761 (998)
++|.|-|=-||+++.+-+-+..+ |-.+.+ -+|++||+=- |... ++.| ..--+.=.+..
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVD------LLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~A 74 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVD------LLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKA 74 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCcc------EEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccC
Confidence 36889999999999998655443 322332 6888999863 3322 2222 11112222455
Q ss_pred CCcEEEeecCccccch
Q 001901 762 PNNVHLIRGNHEAADI 777 (998)
Q Consensus 762 p~~v~llrGNHE~~~~ 777 (998)
|=--++|=||||.++.
T Consensus 75 PVlTIFIGGNHEAsny 90 (456)
T KOG2863|consen 75 PVLTIFIGGNHEASNY 90 (456)
T ss_pred ceeEEEecCchHHHHH
Confidence 6667889999999753
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=60.73 E-value=3.4e+02 Score=31.98 Aligned_cols=140 Identities=17% Similarity=0.153 Sum_probs=65.6
Q ss_pred ccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCc-EEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCC
Q 001901 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQR-YLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (998)
Q Consensus 201 ~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~-~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~ 279 (998)
..+|++|+.+.. -..+. ..+. .......-.++ +|++....++. .++|.+|+.+. ....+.....
T Consensus 228 ~~i~i~dl~tg~--~~~l~---~~~g--~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~--~~~~lt~~~~--- 292 (429)
T PRK01742 228 SQLVVHDLRSGA--RKVVA---SFRG--HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGG--TPSQLTSGAG--- 292 (429)
T ss_pred cEEEEEeCCCCc--eEEEe---cCCC--ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCC--CeEeeccCCC---
Confidence 469999997752 33343 2221 11122232333 44443333332 36999999877 6666543211
Q ss_pred CccceEEEEEeCCEEEEEec-cCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCc
Q 001901 280 PCMYATASARSDGLLLLCGG-RDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRM 358 (998)
Q Consensus 280 ~r~~~~a~~~~~~~lyvfGG-~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~ 358 (998)
.........+++.++|.. .++ ...+|.++.... .-... .. . .+. ....-+++.+++.+.
T Consensus 293 --~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~-~~~~l--~~---~-~~~-~~~SpDG~~ia~~~~------ 352 (429)
T PRK01742 293 --NNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGG-GASLV--GG---R-GYS-AQISADGKTLVMING------ 352 (429)
T ss_pred --CcCCEEECCCCCEEEEEECCCC----CceEEEEECCCC-CeEEe--cC---C-CCC-ccCCCCCCEEEEEcC------
Confidence 122233344555444433 222 236666655433 11111 11 1 111 112224444444332
Q ss_pred cccCCeEEEEECCCCeEEEcc
Q 001901 359 VEDSSSVAVLDTAAGVWCDTK 379 (998)
Q Consensus 359 ~~~~~dv~vyD~~t~~W~~v~ 379 (998)
+.++.+|+.+.+|..+.
T Consensus 353 ----~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 353 ----DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred ----CCEEEEECCCCCeEEec
Confidence 23778999999887654
No 198
>PRK00178 tolB translocation protein TolB; Provisional
Probab=60.59 E-value=3.3e+02 Score=31.86 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=71.0
Q ss_pred ccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCC
Q 001901 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPP 279 (998)
Q Consensus 201 ~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~ 279 (998)
..+|++|+.+.. -..+. ..+. ........ ++++|++....++. .++|++|+.+. .++.+.....
T Consensus 223 ~~l~~~~l~~g~--~~~l~---~~~g--~~~~~~~SpDG~~la~~~~~~g~---~~Iy~~d~~~~--~~~~lt~~~~--- 287 (430)
T PRK00178 223 PRIFVQNLDTGR--REQIT---NFEG--LNGAPAWSPDGSKLAFVLSKDGN---PEIYVMDLASR--QLSRVTNHPA--- 287 (430)
T ss_pred CEEEEEECCCCC--EEEcc---CCCC--CcCCeEECCCCCEEEEEEccCCC---ceEEEEECCCC--CeEEcccCCC---
Confidence 479999998763 44443 1111 11122222 22245443322222 58999999988 7777654221
Q ss_pred CccceEEEEEeCCE-EEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCc
Q 001901 280 PCMYATASARSDGL-LLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRM 358 (998)
Q Consensus 280 ~r~~~~a~~~~~~~-lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~ 358 (998)
.........+++ |++.....+ ...+|.++.... .+......+ .........-+++.+++.....+
T Consensus 288 --~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g-~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~~--- 353 (430)
T PRK00178 288 --IDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGG-RAERVTFVG----NYNARPRLSADGKTLVMVHRQDG--- 353 (430)
T ss_pred --CcCCeEECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEeecCC----CCccceEECCCCCEEEEEEccCC---
Confidence 111222333444 444432221 236777765433 343332211 11111122224443444332221
Q ss_pred cccCCeEEEEECCCCeEEEccc
Q 001901 359 VEDSSSVAVLDTAAGVWCDTKS 380 (998)
Q Consensus 359 ~~~~~dv~vyD~~t~~W~~v~~ 380 (998)
...++++|+.+.+++.+..
T Consensus 354 ---~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 ---NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ---ceEEEEEECCCCCEEEccC
Confidence 2359999999998877654
No 199
>PRK05137 tolB translocation protein TolB; Provisional
Probab=60.36 E-value=3.4e+02 Score=31.94 Aligned_cols=195 Identities=15% Similarity=0.124 Sum_probs=91.8
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCc
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~ 229 (998)
..+|++|+.+.+.+.+... +..-...+..-.+.+|++....+ + ..++|++|+.+.. ..++. ..+. .
T Consensus 226 ~~i~~~dl~~g~~~~l~~~---~g~~~~~~~SPDG~~la~~~~~~--g--~~~Iy~~d~~~~~--~~~Lt---~~~~--~ 291 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF---PGMTFAPRFSPDGRKVVMSLSQG--G--NTDIYTMDLRSGT--TTRLT---DSPA--I 291 (435)
T ss_pred CEEEEEECCCCcEEEeecC---CCcccCcEECCCCCEEEEEEecC--C--CceEEEEECCCCc--eEEcc---CCCC--c
Confidence 5899999999988877643 21111111111233555443321 1 2579999998753 44443 1111 1
Q ss_pred ccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcc
Q 001901 230 GHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLA 308 (998)
Q Consensus 230 ~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~ 308 (998)
......- .+++|++.....+ ...+|.+|+.+. ..+.+.... ..........+++.+++...... ..
T Consensus 292 ~~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~--~~~~lt~~~-----~~~~~~~~SpdG~~ia~~~~~~~---~~ 358 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDRSG---SPQLYVMNADGS--NPRRISFGG-----GRYSTPVWSPRGDLIAFTKQGGG---QF 358 (435)
T ss_pred cCceeEcCCCCEEEEEECCCC---CCeEEEEECCCC--CeEEeecCC-----CcccCeEECCCCCEEEEEEcCCC---ce
Confidence 1112222 2324443332222 257999998877 566654321 11222233345554444433221 23
Q ss_pred cEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEccc
Q 001901 309 SAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 380 (998)
Q Consensus 309 dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~ 380 (998)
.++.++.... ...... .+ .....-...-+++++++-....... ....+|++|+....-+.+..
T Consensus 359 ~i~~~d~~~~-~~~~lt-~~----~~~~~p~~spDG~~i~~~~~~~~~~---~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 359 SIGVMKPDGS-GERILT-SG----FLVEGPTWAPNGRVIMFFRQTPGSG---GAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred EEEEEECCCC-ceEecc-CC----CCCCCCeECCCCCEEEEEEccCCCC---CcceEEEEECCCCceEEccC
Confidence 5666665332 222211 11 1111112222555555543322110 02469999998887776653
No 200
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=60.04 E-value=3.2e+02 Score=31.42 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=77.1
Q ss_pred cCCcEEEEECCCC--cEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCC
Q 001901 148 ATADVHCYDVLTN--KWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP 225 (998)
Q Consensus 148 ~~~dv~~yD~~t~--~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P 225 (998)
..+.++.+|..+. .|+.-...+ ...+..-+.+...+.+|+ |..+ . ...++.+|..+.+.+|..-.. .+
T Consensus 161 ~~g~~~al~~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~~vy~-~~~~---~-~~~~~a~~~~~G~~~w~~~~~---~~ 230 (370)
T COG1520 161 DDGHLYALNADTGTLKWTYETPAP--LSLSIYGSPAIASGTVYV-GSDG---Y-DGILYALNAEDGTLKWSQKVS---QT 230 (370)
T ss_pred CCCeEEEEEccCCcEEEEEecCCc--cccccccCceeecceEEE-ecCC---C-cceEEEEEccCCcEeeeeeee---cc
Confidence 3578888888855 587443321 112222222233444444 4332 1 236999999887778985321 11
Q ss_pred CCCccc-EEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCC
Q 001901 226 GPRYGH-VMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS 304 (998)
Q Consensus 226 ~~R~~h-s~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~ 304 (998)
..+..- ....+....+|+-|+.-.......+.++|..+.+..|+.-..... ...+.........+|++|+........
T Consensus 231 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~-~~~~~~~~~~~~~dG~v~~~~~~~~~~ 309 (370)
T COG1520 231 IGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSV-QGSGLYTTPVAGADGKVYIGFTDNDGR 309 (370)
T ss_pred cCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEe-ccCCeeEEeecCCCccEEEEEeccccc
Confidence 111110 111222224444444211111234899999988889988764111 111222222333578888765433221
Q ss_pred CCcccEEEEec
Q 001901 305 VPLASAYGLAK 315 (998)
Q Consensus 305 ~~~~dv~~~~~ 315 (998)
.....+.++.
T Consensus 310 -~~~~~~~~~~ 319 (370)
T COG1520 310 -GSGSLYALAD 319 (370)
T ss_pred -cccceEEEec
Confidence 3455666665
No 201
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=57.93 E-value=16 Score=38.47 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=36.8
Q ss_pred eEEEecCCCC-----HHHHHHHHHHcC-CCCCCCCccceeEEEeccccCCCCChH-------------HHHHHHHHhhhc
Q 001901 700 IKIFGDLHGQ-----FGDLMRLFDEYG-SPSTAGDIAYIDYLFLGDYVDRGQHSL-------------ETITLLLALKVE 760 (998)
Q Consensus 700 i~vvGDiHG~-----~~dL~~il~~~g-~~~~~~~~~~~~~vfLGDyVDRG~~s~-------------evl~ll~~lk~~ 760 (998)
|+|++|+|=. ++.|.++|..+. ..... .+|++|+++|.-.... +-+..+..+...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~------~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPD------VLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES 74 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTEC------EEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCc------EEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh
Confidence 5677787755 556666676554 22112 7999999999633221 111112111111
Q ss_pred CC--CcEEEeecCccccch
Q 001901 761 YP--NNVHLIRGNHEAADI 777 (998)
Q Consensus 761 ~p--~~v~llrGNHE~~~~ 777 (998)
.. -+|+++.|+||....
T Consensus 75 i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 75 ILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CHCCSEEEEE--TTCTT-S
T ss_pred cccccEEEEeCCCcccccc
Confidence 11 389999999998655
No 202
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=56.87 E-value=2.8e+02 Score=29.76 Aligned_cols=92 Identities=23% Similarity=0.358 Sum_probs=47.6
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEe--CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~ 227 (998)
+.+++||+.+++-...-..+ ..++ +++.. +..+|+.++. .+.+++||+.+.. .......+ ..+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~--~~~~---~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~--~~~~~~~~--~~~ 75 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVG--QRPR---GITLSKDGKLLYVCASD------SDTIQVIDLATGE--VIGTLPSG--PDP 75 (300)
T ss_pred CEEEEEECCCCceEEEEECC--CCCC---ceEECCCCCEEEEEECC------CCeEEEEECCCCc--EEEeccCC--CCc
Confidence 47888998877643332221 1122 23332 2367777653 2568899988753 33211111 111
Q ss_pred CcccEEEEEC-CcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 228 RYGHVMALVG-QRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 228 R~~hs~~~~~-~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
..++... ++.+|+.++.+ ..+..||+.+.
T Consensus 76 ---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~ 105 (300)
T TIGR03866 76 ---ELFALHPNGKILYIANEDD-----NLVTVIDIETR 105 (300)
T ss_pred ---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCC
Confidence 2233333 33566665433 36888999876
No 203
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=56.63 E-value=1e+02 Score=29.64 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=55.7
Q ss_pred EeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEE
Q 001901 289 RSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVL 368 (998)
Q Consensus 289 ~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vy 368 (998)
..+|.+|-..-. ......-+..||..+. +|+....+............+.++|+|-++.-..... ...-++|++
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E-~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---~~~~~iWvL 76 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSE-KFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE---PDSIDIWVL 76 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCc-eEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC---cceEEEEEe
Confidence 347777776554 1223456777777754 7877777622335567777888899988875443221 124689999
Q ss_pred -ECCCCeEEEccc
Q 001901 369 -DTAAGVWCDTKS 380 (998)
Q Consensus 369 -D~~t~~W~~v~~ 380 (998)
|..+.+|.+...
T Consensus 77 eD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 77 EDYEKQEWSKKHI 89 (129)
T ss_pred eccccceEEEEEE
Confidence 567789997754
No 204
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=55.23 E-value=24 Score=38.82 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=46.4
Q ss_pred CCeEEEecCCCC--HHHHHHHHHHcCCCCCCCCccceeEEEeccccCCC-CChHHHHHHHHHhhhcCCCcEEEeecCccc
Q 001901 698 APIKIFGDLHGQ--FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG-QHSLETITLLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 698 ~~i~vvGDiHG~--~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 774 (998)
++|.++|||=|. ...|...|..+......+ -+|..||...-| --+-+++..|+.+-+ .++.+ |||+.
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D-----~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~ 70 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQAD-----LVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTW 70 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCC-----EEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhc
Confidence 368999999999 566666776654322220 344579999766 456788888887643 45555 99997
Q ss_pred c
Q 001901 775 A 775 (998)
Q Consensus 775 ~ 775 (998)
-
T Consensus 71 D 71 (266)
T TIGR00282 71 F 71 (266)
T ss_pred c
Confidence 4
No 205
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.09 E-value=48 Score=32.88 Aligned_cols=103 Identities=25% Similarity=0.342 Sum_probs=66.6
Q ss_pred eEEEecCCCC--HHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccch
Q 001901 700 IKIFGDLHGQ--FGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADI 777 (998)
Q Consensus 700 i~vvGDiHG~--~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 777 (998)
+.++||+|=- -.+|-.-|++.=.|..-. .++++|++. |-|++.+|..+. ..++++||--|..
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki~-----hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~-- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKIQ-----HILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN-- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCcee-----EEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc--
Confidence 5789999853 345555555554554321 689999976 568888888774 6899999987662
Q ss_pred hhhcCChHHHHHHhCCCcchhhhhhhhhhhcccceeEEEcCeEEEecCCccCcccCHHhhhhccCCcc
Q 001901 778 NALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPIT 845 (998)
Q Consensus 778 ~~~~gf~~e~~~~~g~~~~~~~~~~~~~~f~~LP~aa~i~~~il~vHgGi~~~~~~~~~i~~i~rp~~ 845 (998)
.+|.+.. ...+-.=||-||||-.--...+.+.+.-+.|-+.
T Consensus 67 -----------~~yP~~k----------------vvtvGqfkIG~chGhqViP~gd~~sL~~LaRqld 107 (183)
T KOG3325|consen 67 -----------LKYPENK----------------VVTVGQFKIGLCHGHQVIPWGDPESLALLARQLD 107 (183)
T ss_pred -----------ccCCccc----------------eEEeccEEEEeecCcEeecCCCHHHHHHHHHhcC
Confidence 2333220 0011123899999976544467777888888554
No 206
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=54.99 E-value=5.1e+02 Score=32.52 Aligned_cols=95 Identities=15% Similarity=0.267 Sum_probs=54.6
Q ss_pred cEEEEECCCCcEEEecCCCCC-CCCcc-------ce-----EEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEE
Q 001901 151 DVHCYDVLTNKWSRITPFGEP-PTPRA-------AH-----VATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHR 217 (998)
Q Consensus 151 dv~~yD~~t~~W~~l~~~g~~-P~pR~-------~h-----sa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~ 217 (998)
.+..+--.+..|..+...+.+ |.|-. +| +.++..+.+.++.|.+ +.+-+|+..+.. .
T Consensus 337 ~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~------~SikiWn~~t~k----c 406 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG------ESIKIWNRDTLK----C 406 (888)
T ss_pred eEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC------CcEEEEEccCcc----e
Confidence 333344455678888874332 33322 22 2333345555555532 457777777642 2
Q ss_pred eeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 218 VVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 218 l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
+. .++.. |-+++..+.++..+|.|+.+| .+..||+.+.
T Consensus 407 iR---Ti~~~-y~l~~~Fvpgd~~Iv~G~k~G-----el~vfdlaS~ 444 (888)
T KOG0306|consen 407 IR---TITCG-YILASKFVPGDRYIVLGTKNG-----ELQVFDLASA 444 (888)
T ss_pred eE---Eeccc-cEEEEEecCCCceEEEeccCC-----ceEEEEeehh
Confidence 22 22222 888888888767777787665 5778888765
No 207
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=53.24 E-value=3.7e+02 Score=30.09 Aligned_cols=96 Identities=8% Similarity=0.038 Sum_probs=46.1
Q ss_pred CcEEEEECCC-CcEEEecCCCCCCCCccceEEEEe--CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCC
Q 001901 150 ADVHCYDVLT-NKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPG 226 (998)
Q Consensus 150 ~dv~~yD~~t-~~W~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~ 226 (998)
+.+..||+.+ .+++.+... +.....+.++.- ++.+|+.+.. ...+..|++... .++..+.. .+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~---~~~~~~~~l~~spd~~~lyv~~~~------~~~i~~~~~~~~-g~l~~~~~---~~~ 78 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVV---DVPGQVQPMVISPDKRHLYVGVRP------EFRVLSYRIADD-GALTFAAE---SPL 78 (330)
T ss_pred CCEEEEEECCCCceeeeeEE---ecCCCCccEEECCCCCEEEEEECC------CCcEEEEEECCC-CceEEeee---ecC
Confidence 3567777753 567666543 222222333333 3466765431 256777887632 24654442 121
Q ss_pred CCcccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCC
Q 001901 227 PRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAA 263 (998)
Q Consensus 227 ~R~~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s 263 (998)
+-.-+.++.. .++.||+..-. -+.+.+||+.+
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~-----~~~v~v~~~~~ 111 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYN-----ANCVSVSPLDK 111 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcC-----CCeEEEEEECC
Confidence 1111223233 34456665422 24677787754
No 208
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=53.10 E-value=25 Score=38.45 Aligned_cols=57 Identities=23% Similarity=0.197 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCC-----hHHHHHHHHHhhhcCCCcEEEeecCccc
Q 001901 708 GQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-----SLETITLLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 708 G~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-----s~evl~ll~~lk~~~p~~v~llrGNHE~ 774 (998)
|-+.-+..++++...... ..-+|..||+++..+. ...++..|-.+. --+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~-----~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENP-----NTLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCC-----CEEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEeeccccc
Confidence 446667777776543211 1246779999987653 234555555543 23567899996
No 209
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=53.05 E-value=39 Score=39.70 Aligned_cols=34 Identities=6% Similarity=0.100 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCcEEEEcccccccceEEecCCeE
Q 001901 885 DRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHL 918 (998)
Q Consensus 885 ~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~ 918 (998)
..+++.+.++++++.+=||.=.-+.+..-.|.++
T Consensus 322 ~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~ 355 (452)
T KOG1378|consen 322 EGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTC 355 (452)
T ss_pred HHHHHHHHHhceeEEEeccceehhccchhhccee
Confidence 3699999999999999999966666555556554
No 210
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=52.15 E-value=4.6e+02 Score=33.57 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=25.1
Q ss_pred cEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcc
Q 001901 231 HVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (998)
Q Consensus 231 hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~ 272 (998)
.+-+++++ .||+... .+.++.+|..+.+..|+.-.
T Consensus 188 ~TPlvvgg-~lYv~t~------~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 188 ATPLKVGD-TLYLCTP------HNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred cCCEEECC-EEEEECC------CCeEEEEECCCCcEEEEEcC
Confidence 34456666 7998754 25789999988888888654
No 211
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.75 E-value=34 Score=39.88 Aligned_cols=71 Identities=18% Similarity=0.352 Sum_probs=52.3
Q ss_pred cCCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCc
Q 001901 697 KAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNH 772 (998)
Q Consensus 697 ~~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 772 (998)
.++|.||||.-|.+..|.+-.+...... | .+.-++++|++.+--..+-|++.+.-.- ...|--++++-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~--G--pFd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKS--G--PFDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcC--C--CceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 4789999999999999988776653322 1 1225788999999767778887776553 46677788887776
No 212
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=51.59 E-value=1.8e+02 Score=32.03 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=60.8
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCc
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~ 229 (998)
+.+..+|+.+++-.+.... |..-.+=+++.++++||..==. ....++||..+. ..+. ..+.+..
T Consensus 68 S~l~~~d~~tg~~~~~~~l---~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~tl----~~~~---~~~y~~E 131 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPL---PPRYFGEGITILGDKLYQLTWK------EGTGFVYDPNTL----KKIG---TFPYPGE 131 (264)
T ss_dssp EEEEEEETTTSSEEEEEE----TTT--EEEEEEETTEEEEEESS------SSEEEEEETTTT----EEEE---EEE-SSS
T ss_pred EEEEEEECCCCcEEEEEEC---CccccceeEEEECCEEEEEEec------CCeEEEEccccc----eEEE---EEecCCc
Confidence 3788999999987655555 5666788999999999988422 356889999873 3443 3344467
Q ss_pred ccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 230 ~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
+..++.-++ .||+--| .+.++.+|+.+.
T Consensus 132 GWGLt~dg~-~Li~SDG------S~~L~~~dP~~f 159 (264)
T PF05096_consen 132 GWGLTSDGK-RLIMSDG------SSRLYFLDPETF 159 (264)
T ss_dssp --EEEECSS-CEEEE-S------SSEEEEE-TTT-
T ss_pred ceEEEcCCC-EEEEECC------ccceEEECCccc
Confidence 888886665 7888766 367899999765
No 213
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=50.33 E-value=4.3e+02 Score=30.04 Aligned_cols=175 Identities=16% Similarity=0.085 Sum_probs=81.4
Q ss_pred cceEEEEeC--CEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC-CcccEEEEECCcEEEEEcCCCCCCC
Q 001901 176 AAHVATAVG--TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP-RYGHVMALVGQRYLMAIGGNDGKRP 252 (998)
Q Consensus 176 ~~hsa~~~~--~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~-R~~hs~~~~~~~~Lyv~GG~~g~~~ 252 (998)
..|.+.... +.+|+..= -.+.+++|++.....+....... ..|.+ --+|.+..-+++++||..-.
T Consensus 145 h~H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~----- 212 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL----- 212 (345)
T ss_dssp CEEEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT-----
T ss_pred cceeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC-----
Confidence 346665553 36777531 13679999998764335443322 22222 22344444345589998654
Q ss_pred cccEEEEECCCCCceEEEcccCCCC---CCCccceEEEEEe--CCEEEEEeccCCCCCCcccEEEEec-CCCCeEEEEEC
Q 001901 253 LADVWALDTAAKPYEWRKLEPEGEG---PPPCMYATASARS--DGLLLLCGGRDASSVPLASAYGLAK-HRDGRWEWAIA 326 (998)
Q Consensus 253 lndv~~yD~~s~~~~W~~v~~~~~~---P~~r~~~~a~~~~--~~~lyvfGG~~~~~~~~~dv~~~~~-~~~~~W~w~~~ 326 (998)
.+.+.+|+.......|+.+...... .......+...+. +..||+.- +. .+.+..|+. ..+++.++...
T Consensus 213 s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn-r~-----~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 213 SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN-RG-----SNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE-CT-----TTEEEEEEECTTTTTEEEEEE
T ss_pred CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe-cc-----CCEEEEEEEecCCCceEEEEE
Confidence 3566666666222255554322222 1112123333333 34566643 22 234444544 23344444333
Q ss_pred C---CCCCCCcceeEEEE--ECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEccc
Q 001901 327 P---GVSPSPRYQHAAVF--VNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 380 (998)
Q Consensus 327 ~---g~~P~pR~~hsav~--~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~ 380 (998)
. +. .|| .+++ -+..|||.... .+ .-.++..|.++..+..+..
T Consensus 287 ~~~~G~--~Pr---~~~~s~~g~~l~Va~~~-s~------~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 287 VPTGGK--FPR---HFAFSPDGRYLYVANQD-SN------TVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEESSS--SEE---EEEE-TTSSEEEEEETT-TT------EEEEEEEETTTTEEEEEEE
T ss_pred EeCCCC--Ccc---EEEEeCCCCEEEEEecC-CC------eEEEEEEeCCCCcEEEecc
Confidence 2 22 233 2333 24456664322 11 1234455778999988764
No 214
>PTZ00421 coronin; Provisional
Probab=49.99 E-value=5.4e+02 Score=31.11 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=34.0
Q ss_pred EEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 186 MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 186 ~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
.+++.||. ...+.+||+.+.. ....+. + . ...-.++....++.+++.|+.++ .+..||+.+.
T Consensus 139 ~iLaSgs~------DgtVrIWDl~tg~-~~~~l~--~-h--~~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg 200 (493)
T PTZ00421 139 NVLASAGA------DMVVNVWDVERGK-AVEVIK--C-H--SDQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDG 200 (493)
T ss_pred CEEEEEeC------CCEEEEEECCCCe-EEEEEc--C-C--CCceEEEEEECCCCEEEEecCCC-----EEEEEECCCC
Confidence 56666664 2468899998752 111111 1 0 11112232333446777787665 5778999876
No 215
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.51 E-value=4.2e+02 Score=29.70 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=67.6
Q ss_pred CEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccCCcEEEEECCCCcEEEecCCCCCCCCccceEEE---Ee---CCEE
Q 001901 114 PRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVAT---AV---GTMV 187 (998)
Q Consensus 114 ~~lyvfGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~---~~---~~~l 187 (998)
+..+.|||+.-.-..+.. -..+..-+.+..-++.++.||.++++-+.|-.-+ .--++...+=+ .+ ++.+
T Consensus 46 Dd~IyFGGWVHAPa~y~g----k~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkes-ih~~~~WaGEVSdIlYdP~~D~L 120 (339)
T PF09910_consen 46 DDFIYFGGWVHAPAVYEG----KGDGRATIDFRNKYSHVHEYDTENDSVRLLWKES-IHDKTKWAGEVSDILYDPYEDRL 120 (339)
T ss_pred cceEEEeeeecCCceeee----ccCCceEEEEeeccceEEEEEcCCCeEEEEEecc-cCCccccccchhheeeCCCcCEE
Confidence 346779997543211110 0011122344457789999999988744332211 01112221111 11 4577
Q ss_pred EEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCce
Q 001901 188 VIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYE 267 (998)
Q Consensus 188 yVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~ 267 (998)
++.=+- +...--+|.+|..+.. -..+. .-|... .+ .+.+..+| |=.+...-+..+.+||+.+. +
T Consensus 121 LlAR~D---Gh~nLGvy~ldr~~g~--~~~L~---~~ps~K---G~-~~~D~a~F--~i~~~~~g~~~i~~~Dli~~--~ 184 (339)
T PF09910_consen 121 LLARAD---GHANLGVYSLDRRTGK--AEKLS---SNPSLK---GT-LVHDYACF--GINNFHKGVSGIHCLDLISG--K 184 (339)
T ss_pred EEEecC---CcceeeeEEEcccCCc--eeecc---CCCCcC---ce-EeeeeEEE--eccccccCCceEEEEEccCC--e
Confidence 776543 3333467888877753 44443 333331 12 33331222 22333444788999999999 8
Q ss_pred E
Q 001901 268 W 268 (998)
Q Consensus 268 W 268 (998)
|
T Consensus 185 ~ 185 (339)
T PF09910_consen 185 W 185 (339)
T ss_pred E
Confidence 9
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=49.50 E-value=5e+02 Score=30.55 Aligned_cols=190 Identities=13% Similarity=0.114 Sum_probs=89.7
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCCCccceEEEEe-CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC
Q 001901 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (998)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~ 227 (998)
...+|++|+.+++...+... +.. .......- +.+|++..... + ..++|++|+.+.. ...+... ..
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~---~g~-~~~~~~SpDG~~l~~~~s~~--g--~~~Iy~~d~~~g~--~~~lt~~---~~- 292 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASF---RGI-NGAPSFSPDGRRLALTLSRD--G--NPEIYVMDLGSRQ--LTRLTNH---FG- 292 (433)
T ss_pred CcEEEEEECCCCCEEEeccC---CCC-ccCceECCCCCEEEEEEeCC--C--CceEEEEECCCCC--eEECccC---CC-
Confidence 34699999998887777543 111 11111111 33555443221 1 2579999998763 4444311 11
Q ss_pred CcccEEEEECCc-EEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCC
Q 001901 228 RYGHVMALVGQR-YLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP 306 (998)
Q Consensus 228 R~~hs~~~~~~~-~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~ 306 (998)
.........++ +|++.....+ ..++|.+|+.+. +++.+...+. .........+++.+++....+.
T Consensus 293 -~~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g--~~~~lt~~g~-----~~~~~~~SpDG~~Ia~~~~~~~--- 358 (433)
T PRK04922 293 -IDTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGG--SAERLTFQGN-----YNARASVSPDGKKIAMVHGSGG--- 358 (433)
T ss_pred -CccceEECCCCCEEEEEECCCC---CceEEEEECCCC--CeEEeecCCC-----CccCEEECCCCCEEEEEECCCC---
Confidence 11122233333 4444433332 247999999887 7776653221 2222233335544444322221
Q ss_pred cccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEc
Q 001901 307 LASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDT 378 (998)
Q Consensus 307 ~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v 378 (998)
...++.++.... .+. ..... .....-...-+++.+++...... ...++.+|+....=.++
T Consensus 359 ~~~I~v~d~~~g-~~~--~Lt~~---~~~~~p~~spdG~~i~~~s~~~g------~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 359 QYRIAVMDLSTG-SVR--TLTPG---SLDESPSFAPNGSMVLYATREGG------RGVLAAVSTDGRVRQRL 418 (433)
T ss_pred ceeEEEEECCCC-CeE--ECCCC---CCCCCceECCCCCEEEEEEecCC------ceEEEEEECCCCceEEc
Confidence 125666665433 333 22211 11111123335666666543321 34689999866543333
No 217
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=48.92 E-value=23 Score=42.98 Aligned_cols=71 Identities=28% Similarity=0.298 Sum_probs=41.2
Q ss_pred cCCeEEEecCCCCHH------------HHHHHHHHcCCCCCCCCccceeEEEeccccCCCC------ChHHHHHHHHHhh
Q 001901 697 KAPIKIFGDLHGQFG------------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQ------HSLETITLLLALK 758 (998)
Q Consensus 697 ~~~i~vvGDiHG~~~------------dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~------~s~evl~ll~~lk 758 (998)
+-.|+-..|+||++. -+.++.........+.. ..-+|=.||+++..+ .....+.+|-.|+
T Consensus 26 ~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~--~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~ 103 (517)
T COG0737 26 KLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENK--NVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG 103 (517)
T ss_pred eEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcC--CeEEEeCCcccCCccccccccCCChHHHHHhhcC
Confidence 345788999999998 33333322211111110 113444999999843 3344566666664
Q ss_pred hcCCCcEEEeecCccc
Q 001901 759 VEYPNNVHLIRGNHEA 774 (998)
Q Consensus 759 ~~~p~~v~llrGNHE~ 774 (998)
-=.+..||||.
T Consensus 104 -----yDa~tiGNHEF 114 (517)
T COG0737 104 -----YDAMTLGNHEF 114 (517)
T ss_pred -----CcEEeeccccc
Confidence 33677899998
No 218
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=48.80 E-value=24 Score=39.31 Aligned_cols=69 Identities=23% Similarity=0.186 Sum_probs=34.9
Q ss_pred eEEEecCCCCHHH----------HHHHHHHcCCCCCCCCccceeEEEeccccCCCCC-----hHHHHHHHHHhhhcCCCc
Q 001901 700 IKIFGDLHGQFGD----------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-----SLETITLLLALKVEYPNN 764 (998)
Q Consensus 700 i~vvGDiHG~~~d----------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-----s~evl~ll~~lk~~~p~~ 764 (998)
|+-+.|+||++.. +..+++........ +....-+|-.||++.--+. ..-++.+|-.+.. .
T Consensus 3 Il~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~-~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~----D 77 (285)
T cd07405 3 ILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAA-QGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGY----D 77 (285)
T ss_pred EEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhc-cCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCC----c
Confidence 6778999998643 44455544211000 0011135559999832221 2233444444422 3
Q ss_pred EEEeecCccc
Q 001901 765 VHLIRGNHEA 774 (998)
Q Consensus 765 v~llrGNHE~ 774 (998)
+ +..||||.
T Consensus 78 a-~~~GNHEf 86 (285)
T cd07405 78 A-MAVGNHEF 86 (285)
T ss_pred E-Eeeccccc
Confidence 3 34499996
No 219
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=47.19 E-value=48 Score=37.44 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=28.7
Q ss_pred eEEEeccccCCC--CChHHHHHHHHHhhhcCCCcEEEeecCccccc
Q 001901 733 DYLFLGDYVDRG--QHSLETITLLLALKVEYPNNVHLIRGNHEAAD 776 (998)
Q Consensus 733 ~~vfLGDyVDRG--~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 776 (998)
-+||+||.|+-- .+...+|+..++=.+.+.=--..+.||||...
T Consensus 103 lVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 103 LVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred EEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc
Confidence 589999999961 13344444444444554445678899999753
No 220
>PRK00178 tolB translocation protein TolB; Provisional
Probab=46.89 E-value=5.3e+02 Score=30.12 Aligned_cols=183 Identities=14% Similarity=0.141 Sum_probs=88.2
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEe--CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~ 227 (998)
..+|++|+.+++-+.+.... . ...+.... +++|++..-. .+ ..++|++|+.+.. +..+.. .+.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~---g--~~~~~~~SpDG~~la~~~~~--~g--~~~Iy~~d~~~~~--~~~lt~---~~~- 287 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE---G--LNGAPAWSPDGSKLAFVLSK--DG--NPEIYVMDLASRQ--LSRVTN---HPA- 287 (430)
T ss_pred CEEEEEECCCCCEEEccCCC---C--CcCCeEECCCCCEEEEEEcc--CC--CceEEEEECCCCC--eEEccc---CCC-
Confidence 47999999998887775431 1 11111222 3355543321 11 2589999998863 665541 111
Q ss_pred CcccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCC
Q 001901 228 RYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP 306 (998)
Q Consensus 228 R~~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~ 306 (998)
........ ++++|++.....+ ...+|.+|+.+. +++.+...+. .........+++.+++......
T Consensus 288 -~~~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g--~~~~lt~~~~-----~~~~~~~Spdg~~i~~~~~~~~--- 353 (430)
T PRK00178 288 -IDTEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGG--RAERVTFVGN-----YNARPRLSADGKTLVMVHRQDG--- 353 (430)
T ss_pred -CcCCeEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEeecCCC-----CccceEECCCCCEEEEEEccCC---
Confidence 11112222 3335555433222 247999999888 7777643221 2222233334444444433221
Q ss_pred cccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCC
Q 001901 307 LASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAG 373 (998)
Q Consensus 307 ~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~ 373 (998)
...++.++.... .++...... ........-+++++++....++ ...+++.+....
T Consensus 354 ~~~l~~~dl~tg-~~~~lt~~~-----~~~~p~~spdg~~i~~~~~~~g------~~~l~~~~~~g~ 408 (430)
T PRK00178 354 NFHVAAQDLQRG-SVRILTDTS-----LDESPSVAPNGTMLIYATRQQG------RGVLMLVSINGR 408 (430)
T ss_pred ceEEEEEECCCC-CEEEccCCC-----CCCCceECCCCCEEEEEEecCC------ceEEEEEECCCC
Confidence 234677766543 333322111 1111122336666666543322 245788887544
No 221
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=46.84 E-value=3.9e+02 Score=28.49 Aligned_cols=191 Identities=13% Similarity=0.067 Sum_probs=99.4
Q ss_pred cCCcEEEEECCCCcEEEecCCCCCCCCccceEEEEe--CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeec--CC
Q 001901 148 ATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ--GP 223 (998)
Q Consensus 148 ~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~--g~ 223 (998)
....++++|+.+..-..+... . ..+++.. ++.+|+.... .+.++|+.+. +++.+... +.
T Consensus 20 ~~~~i~~~~~~~~~~~~~~~~----~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g--~~~~~~~~~~~~ 82 (246)
T PF08450_consen 20 PGGRIYRVDPDTGEVEVIDLP----G---PNGMAFDRPDGRLYVADSG--------GIAVVDPDTG--KVTVLADLPDGG 82 (246)
T ss_dssp TTTEEEEEETTTTEEEEEESS----S---EEEEEEECTTSEEEEEETT--------CEEEEETTTT--EEEEEEEEETTC
T ss_pred CCCEEEEEECCCCeEEEEecC----C---CceEEEEccCCEEEEEEcC--------ceEEEecCCC--cEEEEeeccCCC
Confidence 345899999999877665543 2 3445554 5688887653 3567798876 47776643 22
Q ss_pred CCCCCcccEEEEECCcEEEEEcCCC-CCCCc--ccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCC-EEEEEec
Q 001901 224 GPGPRYGHVMALVGQRYLMAIGGND-GKRPL--ADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDG-LLLLCGG 299 (998)
Q Consensus 224 ~P~~R~~hs~~~~~~~~Lyv~GG~~-g~~~l--ndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~-~lyvfGG 299 (998)
.+..|.+..+ +-.++.||+---.. ..... ..+|++++. . +...+...-. .-...+...++ .||+.--
T Consensus 83 ~~~~~~ND~~-vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~--~~~~~~~~~~-----~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 83 VPFNRPNDVA-VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G--KVTVVADGLG-----FPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp SCTEEEEEEE-E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S--EEEEEEEEES-----SEEEEEEETTSSEEEEEET
T ss_pred cccCCCceEE-EcCCCCEEEEecCCCccccccccceEEECCC-C--eEEEEecCcc-----cccceEECCcchheeeccc
Confidence 2334444444 33444677742211 11112 579999998 5 5555433211 11222233344 6776421
Q ss_pred cCCCCCCcccEEEEecCCCCe-EEEEECCCCCCCC-cceeEEEEE-CCEEEEEcccCCCCCccccCCeEEEEECCCCeEE
Q 001901 300 RDASSVPLASAYGLAKHRDGR-WEWAIAPGVSPSP-RYQHAAVFV-NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWC 376 (998)
Q Consensus 300 ~~~~~~~~~dv~~~~~~~~~~-W~w~~~~g~~P~p-R~~hsav~~-~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~ 376 (998)
....+|.|+....+. +.-...-...+.. ..--++++- +++|||..-. ...|++||+....-.
T Consensus 154 ------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~---------~~~I~~~~p~G~~~~ 218 (246)
T PF08450_consen 154 ------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG---------GGRIVVFDPDGKLLR 218 (246)
T ss_dssp ------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---------TTEEEEEETTSCEEE
T ss_pred ------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---------CCEEEEECCCccEEE
Confidence 234578887754432 3322211111111 223344443 5789987321 356999999955554
Q ss_pred Ecc
Q 001901 377 DTK 379 (998)
Q Consensus 377 ~v~ 379 (998)
.+.
T Consensus 219 ~i~ 221 (246)
T PF08450_consen 219 EIE 221 (246)
T ss_dssp EEE
T ss_pred EEc
Confidence 444
No 222
>PRK04043 tolB translocation protein TolB; Provisional
Probab=46.75 E-value=5.5e+02 Score=30.26 Aligned_cols=154 Identities=10% Similarity=0.056 Sum_probs=76.9
Q ss_pred ccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCC
Q 001901 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPP 280 (998)
Q Consensus 201 ~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~ 280 (998)
.++|++|+.+.. =..+. ..+ .........-++++|++.-..++ ..++|.+|+.+. .++++.....
T Consensus 213 ~~Iyv~dl~tg~--~~~lt---~~~-g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g--~~~~LT~~~~---- 277 (419)
T PRK04043 213 PTLYKYNLYTGK--KEKIA---SSQ-GMLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTK--TLTQITNYPG---- 277 (419)
T ss_pred CEEEEEECCCCc--EEEEe---cCC-CcEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCC--cEEEcccCCC----
Confidence 389999998752 33333 111 11111111223335555443333 368999999888 8888865321
Q ss_pred ccceEEEEEeCC-EEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCcc
Q 001901 281 CMYATASARSDG-LLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMV 359 (998)
Q Consensus 281 r~~~~a~~~~~~-~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~ 359 (998)
.........++ +|++.-.+. ...++|.++.... ..+.....+ .+.. ...-+++.+++-.........
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g-~~~rlt~~g-----~~~~-~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSG-SVEQVVFHG-----KNNS-SVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred -ccCccEECCCCCEEEEEECCC----CCceEEEEECCCC-CeEeCccCC-----CcCc-eECCCCCEEEEEEcCCCcccC
Confidence 12222333344 566554332 1357787776543 332221111 1112 223345434443322211100
Q ss_pred ccCCeEEEEECCCCeEEEcccC
Q 001901 360 EDSSSVAVLDTAAGVWCDTKSV 381 (998)
Q Consensus 360 ~~~~dv~vyD~~t~~W~~v~~~ 381 (998)
....+++++|+++..++.+...
T Consensus 346 ~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCCcEEEEEECCCCCeEECCCC
Confidence 1136899999999999887654
No 223
>smart00284 OLF Olfactomedin-like domains.
Probab=45.12 E-value=4.6e+02 Score=28.82 Aligned_cols=159 Identities=13% Similarity=0.012 Sum_probs=76.5
Q ss_pred CCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCc-eEEeeecC---CCCCCCcccE---EEEECCcEEEEE
Q 001901 172 PTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPR-WHRVVVQG---PGPGPRYGHV---MALVGQRYLMAI 244 (998)
Q Consensus 172 P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~-W~~l~~~g---~~P~~R~~hs---~~~~~~~~Lyv~ 244 (998)
|.+-.+-+.+++++.+|.--.. ..++..||+.+.+.. +..++..+ ..|-...+++ .++-.+ -|+|+
T Consensus 71 p~~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~-GLWvI 143 (255)
T smart00284 71 PHAGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDEN-GLWVI 143 (255)
T ss_pred CCccccccEEEECceEEEEecC------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCC-ceEEE
Confidence 5666777888889888885432 367999999997521 33232110 1111111111 122233 36665
Q ss_pred cCCCCCCCcccEEEEECCCCC--ceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEE
Q 001901 245 GGNDGKRPLADVWALDTAAKP--YEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWE 322 (998)
Q Consensus 245 GG~~g~~~lndv~~yD~~s~~--~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~ 322 (998)
=....+.-.-.+-++|+.+.. -+|..--+ +.....+.+.-|.||+.-..... ...-.+.||..+. +=.
T Consensus 144 Yat~~~~g~ivvSkLnp~tL~ve~tW~T~~~-------k~sa~naFmvCGvLY~~~s~~~~--~~~I~yayDt~t~-~~~ 213 (255)
T smart00284 144 YATEQNAGKIVISKLNPATLTIENTWITTYN-------KRSASNAFMICGILYVTRSLGSK--GEKVFYAYDTNTG-KEG 213 (255)
T ss_pred EeccCCCCCEEEEeeCcccceEEEEEEcCCC-------cccccccEEEeeEEEEEccCCCC--CcEEEEEEECCCC-ccc
Confidence 332222112234566766552 25654221 33444555567889988532211 1223455666544 212
Q ss_pred EEECCCCCCCCcceeEEEEE---CCEEEEE
Q 001901 323 WAIAPGVSPSPRYQHAAVFV---NARLHVS 349 (998)
Q Consensus 323 w~~~~g~~P~pR~~hsav~~---~~~L~V~ 349 (998)
...++ .+.+-..+++.-+ +.+||+.
T Consensus 214 ~~~i~--f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 214 HLDIP--FENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred eeeee--eccccccceeceeCCCCCeEEEE
Confidence 22221 1222333444444 3578876
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=43.87 E-value=6e+02 Score=29.86 Aligned_cols=191 Identities=15% Similarity=0.119 Sum_probs=86.6
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCc
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRY 229 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~ 229 (998)
..+|..|........+.... .+-.. -...-+++.++|..... ...++|++|+.+.. =..+. ..+. .
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~---~~v~~-p~wSPDG~~la~~s~~~---~~~~I~~~dl~~g~--~~~l~---~~~g--~ 241 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSP---EPIIS-PAWSPDGTKLAYVSFES---KKPVVYVHDLATGR--RRVVA---NFKG--S 241 (427)
T ss_pred cEEEEECCCCCCceEeccCC---CCccc-ceEcCCCCEEEEEEccC---CCcEEEEEECCCCC--EEEee---cCCC--C
Confidence 46777777655555553321 11111 11111333333333211 12469999998753 23332 1221 1
Q ss_pred ccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcc
Q 001901 230 GHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLA 308 (998)
Q Consensus 230 ~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~ 308 (998)
..+...- ++++|++....++ ..++|.+|+.+. ..+++..... .........+++.++|..... + ..
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~~~-----~~~~~~wSpDG~~l~f~s~~~-g--~~ 308 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGS--GLRRLTQSSG-----IDTEPFFSPDGRSIYFTSDRG-G--AP 308 (427)
T ss_pred ccceEECCCCCEEEEEEccCC---CceEEEEECCCC--CcEECCCCCC-----CCcCeEEcCCCCEEEEEecCC-C--Cc
Confidence 1122222 2334554444333 268999999877 5555543211 111223444565444433211 1 23
Q ss_pred cEEEEecCCCCeEEEEECCCCCCCCcceeE-EEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcc
Q 001901 309 SAYGLAKHRDGRWEWAIAPGVSPSPRYQHA-AVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTK 379 (998)
Q Consensus 309 dv~~~~~~~~~~W~w~~~~g~~P~pR~~hs-av~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~ 379 (998)
.+|.++.... ..+.....+ .+... ...-+++.+++....+. ...++++|+.+.+.+.+.
T Consensus 309 ~Iy~~~~~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g------~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 309 QIYRMPASGG-AAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG------AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEEEECCCC-ceEEEecCC-----CCcCceEECCCCCEEEEEEccCC------cEEEEEEECCCCCeEEcc
Confidence 5677664432 333222211 11112 22224544444332221 236999999998877664
No 225
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=43.37 E-value=62 Score=35.97 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=48.8
Q ss_pred CCeEEEecCCC----CHHHHHHHHHHcC-CCCCCCCccceeEEEeccccCCC----CChH----HHHHHHHHh-hhcCC-
Q 001901 698 APIKIFGDLHG----QFGDLMRLFDEYG-SPSTAGDIAYIDYLFLGDYVDRG----QHSL----ETITLLLAL-KVEYP- 762 (998)
Q Consensus 698 ~~i~vvGDiHG----~~~dL~~il~~~g-~~~~~~~~~~~~~vfLGDyVDRG----~~s~----evl~ll~~l-k~~~p- 762 (998)
..++|+||+|= .++.|.++|+.+. ..+. .+ ...-+||+|+++-+. ..+. |-..-|..| ..+||
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~-~~-~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPE-NE-LPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCcc-cC-CCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 56999999995 4778888888873 2111 11 133699999998763 2222 334444442 33565
Q ss_pred ----CcEEEeecCccc
Q 001901 763 ----NNVHLIRGNHEA 774 (998)
Q Consensus 763 ----~~v~llrGNHE~ 774 (998)
.+++++.|-.|-
T Consensus 106 L~~~s~fVFVPGpnDP 121 (291)
T PTZ00235 106 ILEHCYLIFIPGINDP 121 (291)
T ss_pred HHhcCeEEEECCCCCC
Confidence 489999999996
No 226
>PLN00181 protein SPA1-RELATED; Provisional
Probab=42.79 E-value=8.4e+02 Score=31.27 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 186 MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 186 ~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
..++.|+. ...+.+||+.+.. .+.... .....-.++... .++.+++.||.++ .+..||+.+.
T Consensus 546 ~~las~~~------Dg~v~lWd~~~~~----~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~ 608 (793)
T PLN00181 546 SQVASSNF------EGVVQVWDVARSQ----LVTEMK--EHEKRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQG 608 (793)
T ss_pred CEEEEEeC------CCeEEEEECCCCe----EEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCC
Confidence 44555554 2468889987642 222110 011111223232 2336778888765 4677888654
No 227
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=42.53 E-value=1.3e+02 Score=35.24 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=77.0
Q ss_pred ccEEEEECCcEEEEEcC-CCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEE--E-EEeCCEEEEEeccCCCCC
Q 001901 230 GHVMALVGQRYLMAIGG-NDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATA--S-ARSDGLLLLCGGRDASSV 305 (998)
Q Consensus 230 ~hs~~~~~~~~Lyv~GG-~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a--~-~~~~~~lyvfGG~~~~~~ 305 (998)
-|+.+..+.+ .|++|| ..+ ++|.+.+.+.. --.+-. +.|... . ...++.+++.||.|+.-
T Consensus 84 v~al~s~n~G-~~l~ag~i~g-----~lYlWelssG~--LL~v~~-------aHYQ~ITcL~fs~dgs~iiTgskDg~V- 147 (476)
T KOG0646|consen 84 VHALASSNLG-YFLLAGTISG-----NLYLWELSSGI--LLNVLS-------AHYQSITCLKFSDDGSHIITGSKDGAV- 147 (476)
T ss_pred eeeeecCCCc-eEEEeecccC-----cEEEEEecccc--HHHHHH-------hhccceeEEEEeCCCcEEEecCCCccE-
Confidence 4566666665 566666 444 57777777762 111110 122222 2 23577888888877653
Q ss_pred CcccEEEEecCCCCeEEEEECCCCCCCCc---ceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcccCc
Q 001901 306 PLASAYGLAKHRDGRWEWAIAPGVSPSPR---YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVV 382 (998)
Q Consensus 306 ~~~dv~~~~~~~~~~W~w~~~~g~~P~pR---~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~~~ 382 (998)
-+|.+-..-+ ......+.|+ ..|+..+. +.-+-+||.+..-.....-..+-+||+..+.--.--
T Consensus 148 ---~vW~l~~lv~------a~~~~~~~p~~~f~~HtlsIT-Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti--- 214 (476)
T KOG0646|consen 148 ---LVWLLTDLVS------ADNDHSVKPLHIFSDHTLSIT-DLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI--- 214 (476)
T ss_pred ---EEEEEEeecc------cccCCCccceeeeccCcceeE-EEEecCCCccceEEEecCCceEEEEEeccceeeEEE---
Confidence 2333211111 0000123333 33333332 222334553322211122345778888777432221
Q ss_pred CCCCCCCCccccCCCCCccCCCCcceeEEEEE-CCEEEEEcCCCCCCCcccEEEe
Q 001901 383 TSPRTGRYSADAAGGDAAVELTRRCRHAAAAV-GDLIFIYGGLRGGVLLDDLLVA 436 (998)
Q Consensus 383 ~~p~~~~~~~~~~~~~~~~~p~~R~~hsa~~~-~~~LyVfGG~~~~~~l~Dv~~l 436 (998)
..++.-+++++- .++.+.+|+..|..+..+++.+
T Consensus 215 --------------------~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 215 --------------------TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred --------------------ecCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 235556666665 4477777887777666666554
No 228
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=42.52 E-value=5.6e+02 Score=29.11 Aligned_cols=202 Identities=13% Similarity=0.102 Sum_probs=90.6
Q ss_pred cEEEEECCCCcEEEecCCCCCCCCccceEEEE--eCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCC-CC
Q 001901 151 DVHCYDVLTNKWSRITPFGEPPTPRAAHVATA--VGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP-GP 227 (998)
Q Consensus 151 dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~--~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P-~~ 227 (998)
.++.||..+.+++.+........|. -.+. -++.||+..... .....+..|.+...+.+.+.+. ..+ .+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps---~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~---~~~~~g 86 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPS---WLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLN---SVPSGG 86 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSEC---CEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEE---EEEESS
T ss_pred EEEEEcCCCCCceEeeeecCCCCCc---eEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEee---eeccCC
Confidence 4556677999998876531111211 1222 245888886543 1234566777665433566655 223 22
Q ss_pred Cc-ccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEc---------ccCCCCCCCccceEEEEEeCC-EEEE
Q 001901 228 RY-GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKL---------EPEGEGPPPCMYATASARSDG-LLLL 296 (998)
Q Consensus 228 R~-~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v---------~~~~~~P~~r~~~~a~~~~~~-~lyv 296 (998)
.. .|.++.-.+++||+.--. -..+.+|++.... +=... .+..........|......++ .+|+
T Consensus 87 ~~p~~i~~~~~g~~l~vany~-----~g~v~v~~l~~~g-~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYG-----GGSVSVFPLDDDG-SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTS-EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCcEEEEEecCCCEEEEEEcc-----CCeEEEEEccCCc-ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 22 232222244466664211 2467778776631 11111 011111111233444444444 5665
Q ss_pred EeccCCCCCCcccEEEEecCCCC-eEEEEECCCCCCCCcceeEEEEEC-CEEEEEcccCCCCCccccCCeEEEEECC--C
Q 001901 297 CGGRDASSVPLASAYGLAKHRDG-RWEWAIAPGVSPSPRYQHAAVFVN-ARLHVSGGALGGGRMVEDSSSVAVLDTA--A 372 (998)
Q Consensus 297 fGG~~~~~~~~~dv~~~~~~~~~-~W~w~~~~g~~P~pR~~hsav~~~-~~L~V~GG~~~~~~~~~~~~dv~vyD~~--t 372 (998)
.. . -.+.++.|+..... ..........++..--.|.+..-+ ..+||..-. .+.|.+|+.. +
T Consensus 161 ~d-l-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~---------s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 161 PD-L-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL---------SNTVSVFDYDPSD 225 (345)
T ss_dssp EE-T-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT---------TTEEEEEEEETTT
T ss_pred Ee-c-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC---------CCcEEEEeecccC
Confidence 42 2 13445666554432 232211111111111123332223 478998643 3445555544 7
Q ss_pred CeEEEcccCc
Q 001901 373 GVWCDTKSVV 382 (998)
Q Consensus 373 ~~W~~v~~~~ 382 (998)
..|+.+....
T Consensus 226 g~~~~~~~~~ 235 (345)
T PF10282_consen 226 GSLTEIQTIS 235 (345)
T ss_dssp TEEEEEEEEE
T ss_pred CceeEEEEee
Confidence 7787776653
No 229
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.91 E-value=5.5e+02 Score=28.85 Aligned_cols=136 Identities=16% Similarity=0.152 Sum_probs=67.7
Q ss_pred cccEEEEECCCCC--ceEEEcccCCCCCCCccceEEEEE---eCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECC
Q 001901 253 LADVWALDTAAKP--YEWRKLEPEGEGPPPCMYATASAR---SDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAP 327 (998)
Q Consensus 253 lndv~~yD~~s~~--~~W~~v~~~~~~P~~r~~~~a~~~---~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~ 327 (998)
++.++.||++... .-|..--.-... -.+-.+-.+ .+++|++.-+- +..---+|.++..+. .-++..-.
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~~~---WaGEVSdIlYdP~~D~LLlAR~D---Gh~nLGvy~ldr~~g-~~~~L~~~ 149 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDKTK---WAGEVSDILYDPYEDRLLLARAD---GHANLGVYSLDRRTG-KAEKLSSN 149 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCccc---cccchhheeeCCCcCEEEEEecC---CcceeeeEEEcccCC-ceeeccCC
Confidence 5779999998874 356543221111 111111122 36778776432 222346777776654 22222222
Q ss_pred CCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeE--EEcccCcCCCCCCCCccccCCCCCccCCCC
Q 001901 328 GVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVW--CDTKSVVTSPRTGRYSADAAGGDAAVELTR 405 (998)
Q Consensus 328 g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W--~~v~~~~~~p~~~~~~~~~~~~~~~~~p~~ 405 (998)
|.+ -.+.+++..+|-+ .+. ......+.+||+.+++| ..++... ++. +.....
T Consensus 150 ---ps~---KG~~~~D~a~F~i--~~~----~~g~~~i~~~Dli~~~~~~e~f~~~~-s~D-------------g~~~~~ 203 (339)
T PF09910_consen 150 ---PSL---KGTLVHDYACFGI--NNF----HKGVSGIHCLDLISGKWVIESFDVSL-SVD-------------GGPVIR 203 (339)
T ss_pred ---CCc---CceEeeeeEEEec--ccc----ccCCceEEEEEccCCeEEEEeccccc-CCC-------------CCceEe
Confidence 222 2344444444433 111 13367899999999999 4333221 111 111234
Q ss_pred cceeEEEEECCEEEEE
Q 001901 406 RCRHAAAAVGDLIFIY 421 (998)
Q Consensus 406 R~~hsa~~~~~~LyVf 421 (998)
|..-.++..-+++|.|
T Consensus 204 ~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 204 PELGAMASAYNRLFAF 219 (339)
T ss_pred eccccEEEEeeeEEEE
Confidence 4555566666776665
No 230
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=41.35 E-value=39 Score=37.64 Aligned_cols=38 Identities=24% Similarity=0.124 Sum_probs=22.9
Q ss_pred eEEEeccccCCCCCh-------HHHHHHHHHhhhcCCCcEEEeecCcccc
Q 001901 733 DYLFLGDYVDRGQHS-------LETITLLLALKVEYPNNVHLIRGNHEAA 775 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s-------~evl~ll~~lk~~~p~~v~llrGNHE~~ 775 (998)
-+|.-||+++.-+.+ .-.+.+|=.+ .-=.+..||||.-
T Consensus 53 Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~m-----gyDa~tlGNHEFd 97 (282)
T cd07407 53 LLVDTGDLHDGNGLSDASPPPGSYSNPIFRMM-----PYDLLTIGNHELY 97 (282)
T ss_pred EEEeCCCccCCeeceeeecCCChHHHHHHHhc-----CCcEEeecccccC
Confidence 356699999754322 2234444444 3456788999993
No 231
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=41.08 E-value=4.5e+02 Score=28.98 Aligned_cols=115 Identities=15% Similarity=0.072 Sum_probs=69.2
Q ss_pred ccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCccc
Q 001901 230 GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLAS 309 (998)
Q Consensus 230 ~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~d 309 (998)
-.+..+..++.||.--|..|. +.+.++|+.+. +=......+ ++.+.=+.++.+++||..--. ...
T Consensus 47 TQGL~~~~~g~LyESTG~yG~---S~l~~~d~~tg--~~~~~~~l~----~~~FgEGit~~~d~l~qLTWk------~~~ 111 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQ---SSLRKVDLETG--KVLQSVPLP----PRYFGEGITILGDKLYQLTWK------EGT 111 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTE---EEEEEEETTTS--SEEEEEE-T----TT--EEEEEEETTEEEEEESS------SSE
T ss_pred CccEEecCCCEEEEeCCCCCc---EEEEEEECCCC--cEEEEEECC----ccccceeEEEECCEEEEEEec------CCe
Confidence 344555455589998887764 57889999998 433333332 257777788889999998543 344
Q ss_pred EEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeE
Q 001901 310 AYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVW 375 (998)
Q Consensus 310 v~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W 375 (998)
.+.|+..+- +....- +.+..+-+.+..+..|++.-| ++.++.+||++.+=
T Consensus 112 ~f~yd~~tl---~~~~~~---~y~~EGWGLt~dg~~Li~SDG----------S~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 112 GFVYDPNTL---KKIGTF---PYPGEGWGLTSDGKRLIMSDG----------SSRLYFLDPETFKE 161 (264)
T ss_dssp EEEEETTTT---EEEEEE---E-SSS--EEEECSSCEEEE-S----------SSEEEEE-TTT-SE
T ss_pred EEEEccccc---eEEEEE---ecCCcceEEEcCCCEEEEECC----------ccceEEECCcccce
Confidence 566766533 222211 223466777777788888766 46699999987753
No 232
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=41.05 E-value=4.2e+02 Score=27.26 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=43.3
Q ss_pred CcEEEEECCCCcEEEecCCCCCCCCccceEEEEeC-CEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCC
Q 001901 150 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPR 228 (998)
Q Consensus 150 ~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~-~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R 228 (998)
+.+.+||..+......-.. ....-.++.... +.+++.|+. ...+.+||+.+.. ....+. ....
T Consensus 73 ~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~~~~~-----~~~~ 136 (289)
T cd00200 73 KTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETGK-CLTTLR-----GHTD 136 (289)
T ss_pred CeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCcE-EEEEec-----cCCC
Confidence 3678888877432221111 111112223333 366666652 2468899988542 111111 1111
Q ss_pred cccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 229 YGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 229 ~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
.-.++....++.+++.|+.+ ..+..||+.+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~ 167 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTG 167 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCC-----CcEEEEEcccc
Confidence 12233333333455555433 35788888654
No 233
>PTZ00420 coronin; Provisional
Probab=39.69 E-value=8.2e+02 Score=30.22 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=33.7
Q ss_pred EEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 186 MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 186 ~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
.+++.||.+ ..+.+||+.+.. .-..+. .+ ..-.++....++.+++.++.++ .+..||+.+.
T Consensus 139 ~iLaSgS~D------gtIrIWDl~tg~-~~~~i~----~~--~~V~SlswspdG~lLat~s~D~-----~IrIwD~Rsg 199 (568)
T PTZ00420 139 YIMCSSGFD------SFVNIWDIENEK-RAFQIN----MP--KKLSSLKWNIKGNLLSGTCVGK-----HMHIIDPRKQ 199 (568)
T ss_pred eEEEEEeCC------CeEEEEECCCCc-EEEEEe----cC--CcEEEEEECCCCCEEEEEecCC-----EEEEEECCCC
Confidence 555566642 468899998753 111221 11 1123333333446777776543 5888999776
No 234
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=37.44 E-value=48 Score=41.47 Aligned_cols=69 Identities=19% Similarity=0.103 Sum_probs=41.1
Q ss_pred ecCCeEEEecCCCCHHH----------------HHHHHHHcCCCCCCCCccceeEEEeccccCCCCChH-----------
Q 001901 696 LKAPIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSL----------- 748 (998)
Q Consensus 696 ~~~~i~vvGDiHG~~~d----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~----------- 748 (998)
+.-+|.-..|+||++.. +..++++..-... ..-+|-.||++...+.+-
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~llvD~GD~~qGsp~~~~~~~~~~~~g~ 98 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAK-----NSVLVDNGDLIQGSPLGDYMAAKGLKAGD 98 (649)
T ss_pred ceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCC-----CEEEEECCCcCCCchhhhhhhhccccCCC
Confidence 34567889999999743 3334444321111 124666999997655331
Q ss_pred --HHHHHHHHhhhcCCCcEEEeecCccc
Q 001901 749 --ETITLLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 749 --evl~ll~~lk~~~p~~v~llrGNHE~ 774 (998)
-++..|=.| .--....||||.
T Consensus 99 ~~p~i~amN~l-----gyDa~tlGNHEF 121 (649)
T PRK09420 99 VHPVYKAMNTL-----DYDVGNLGNHEF 121 (649)
T ss_pred cchHHHHHHhc-----CCcEEeccchhh
Confidence 245555555 345677899996
No 235
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=37.03 E-value=78 Score=34.73 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=42.6
Q ss_pred CeEEEecCCCCH--HHHHHHHHHcCCCCCCCCccceeEEEeccccCCC-CChHHHHHHHHHhhhcCCCcEEEeecCccc
Q 001901 699 PIKIFGDLHGQF--GDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRG-QHSLETITLLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 699 ~i~vvGDiHG~~--~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 774 (998)
+|.++|||=|.- ..+.+.|..+...... | -+|-.||..--| .-+-++...|..+.. .++.+ ||||.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~-D----~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iTl-GNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKI-D----FVIANGENAAGGKGITPKIAKELLSAGV----DVITM-GNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCC-C----EEEECCccccCCCCCCHHHHHHHHhcCC----CEEEe-ccccc
Confidence 478999999984 4455556554321111 0 244479998766 367788888888754 34444 99986
No 236
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=36.85 E-value=7.2e+02 Score=28.78 Aligned_cols=204 Identities=13% Similarity=0.067 Sum_probs=102.4
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCCCccceE-EEEeCC-EEEEEeCCCCCCC-----CcccEEEEEcCCCCCceEEeeec
Q 001901 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHV-ATAVGT-MVVIQGGIGPAGL-----SAEDLHVLDLTQQRPRWHRVVVQ 221 (998)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hs-a~~~~~-~lyVfGG~~~~~~-----~~~dv~~~Dl~t~t~~W~~l~~~ 221 (998)
...++++|+.+++...-. .++...+ ++-..+ ..+++........ .-..+|++.+.+...+=..+-
T Consensus 149 ~~~l~v~Dl~tg~~l~d~------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf-- 220 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLPDG------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF-- 220 (414)
T ss_dssp EEEEEEEETTTTEEEEEE------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE--
T ss_pred eEEEEEEECCCCcCcCCc------ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE--
Confidence 347899999998543221 1122223 343433 5555554433222 257899999887531211222
Q ss_pred CCCCCCCc-ccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCC---CceEEEcccCCCCCCCccceEEEEEeCCEEEEE
Q 001901 222 GPGPGPRY-GHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK---PYEWRKLEPEGEGPPPCMYATASARSDGLLLLC 297 (998)
Q Consensus 222 g~~P~~R~-~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~---~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvf 297 (998)
..+.... ...+..-.+++.+++.-..+.. .+++|.+|+... ...|..+..... .....+...++.+|+.
T Consensus 221 -e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~-----~~~~~v~~~~~~~yi~ 293 (414)
T PF02897_consen 221 -EEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPRED-----GVEYYVDHHGDRLYIL 293 (414)
T ss_dssp -C-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSS-----S-EEEEEEETTEEEEE
T ss_pred -eecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCC-----ceEEEEEccCCEEEEe
Confidence 2222232 2222233333333333322322 589999999874 347888865322 2223344458899988
Q ss_pred eccCCCCCCcccEEEEecCCCC--eEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECC-CCe
Q 001901 298 GGRDASSVPLASAYGLAKHRDG--RWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTA-AGV 374 (998)
Q Consensus 298 GG~~~~~~~~~dv~~~~~~~~~--~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~-t~~ 374 (998)
-..+. ....++.++..... .|.-..++.. ....--.+...+++|++.-=.++ ...+.+||+. +..
T Consensus 294 Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~Lvl~~~~~~-------~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 294 TNDDA---PNGRLVAVDLADPSPAEWWTVLIPED--EDVSLEDVSLFKDYLVLSYRENG-------SSRLRVYDLDDGKE 361 (414)
T ss_dssp E-TT----TT-EEEEEETTSTSGGGEEEEEE--S--SSEEEEEEEEETTEEEEEEEETT-------EEEEEEEETT-TEE
T ss_pred eCCCC---CCcEEEEecccccccccceeEEcCCC--CceeEEEEEEECCEEEEEEEECC-------ccEEEEEECCCCcE
Confidence 65332 33456666555443 3553333211 12344455667888887743322 4569999998 444
Q ss_pred EEEcc
Q 001901 375 WCDTK 379 (998)
Q Consensus 375 W~~v~ 379 (998)
-..++
T Consensus 362 ~~~~~ 366 (414)
T PF02897_consen 362 SREIP 366 (414)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 43333
No 237
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=35.92 E-value=61 Score=36.69 Aligned_cols=69 Identities=22% Similarity=0.147 Sum_probs=38.5
Q ss_pred eEEEecCCCCHH------HHHHHHHHcCCCCCCCCccceeEEEeccccCCCCC-------------hHHHHHHHHHhhhc
Q 001901 700 IKIFGDLHGQFG------DLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQH-------------SLETITLLLALKVE 760 (998)
Q Consensus 700 i~vvGDiHG~~~------dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-------------s~evl~ll~~lk~~ 760 (998)
|+-+-|+||++. .+..+++......... ....-+|.-||.+.-++. ..-++.+|=++.
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~-~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g-- 79 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAAE-YDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALG-- 79 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhcc-CCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccC--
Confidence 566889999964 3433444432110000 011256779999875432 334455555553
Q ss_pred CCCcEEEeecCccc
Q 001901 761 YPNNVHLIRGNHEA 774 (998)
Q Consensus 761 ~p~~v~llrGNHE~ 774 (998)
-=.+..||||.
T Consensus 80 ---~Da~tlGNHEF 90 (313)
T cd08162 80 ---VQAIALGNHEF 90 (313)
T ss_pred ---CcEEecccccc
Confidence 34677899996
No 238
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=35.53 E-value=6.9e+02 Score=28.15 Aligned_cols=178 Identities=13% Similarity=0.209 Sum_probs=75.2
Q ss_pred CCCcEEEecCCCCCCCCccceEEEEeC-CEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEE
Q 001901 158 LTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALV 236 (998)
Q Consensus 158 ~t~~W~~l~~~g~~P~pR~~hsa~~~~-~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~ 236 (998)
.-.+|+++.... +.|-..+....++ +.++++|.. ..+|+=.-... .|..+... .. -.-..+...
T Consensus 89 gG~tW~~v~l~~--~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~--tW~~~~~~---~~-gs~~~~~r~ 153 (302)
T PF14870_consen 89 GGKTWERVPLSS--KLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGK--TWQAVVSE---TS-GSINDITRS 153 (302)
T ss_dssp TTSS-EE----T--T-SS-EEEEEEEETTEEEEEETT---------EEEESSTTS--SEEEEE-S--------EEEEEE-
T ss_pred CCCCcEEeecCC--CCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCC--CeeEcccC---Cc-ceeEeEEEC
Confidence 356899987432 3444455566654 477777643 23443322233 49987621 11 112223344
Q ss_pred CCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEec-
Q 001901 237 GQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAK- 315 (998)
Q Consensus 237 ~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~- 315 (998)
.++.+++++. .|. -+...|+-.. .|+....... |+...+....++.||+.. +.+. ..+..
T Consensus 154 ~dG~~vavs~-~G~----~~~s~~~G~~--~w~~~~r~~~----~riq~~gf~~~~~lw~~~-~Gg~-------~~~s~~ 214 (302)
T PF14870_consen 154 SDGRYVAVSS-RGN----FYSSWDPGQT--TWQPHNRNSS----RRIQSMGFSPDGNLWMLA-RGGQ-------IQFSDD 214 (302)
T ss_dssp TTS-EEEEET-TSS----EEEEE-TT-S--S-EEEE--SS----S-EEEEEE-TTS-EEEEE-TTTE-------EEEEE-
T ss_pred CCCcEEEEEC-ccc----EEEEecCCCc--cceEEccCcc----ceehhceecCCCCEEEEe-CCcE-------EEEccC
Confidence 5555555553 332 1234566666 7887755433 677777777888998865 2221 22222
Q ss_pred -CCCCeEEEEECCCCCCCCcceeE-EEEE-CCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcccC
Q 001901 316 -HRDGRWEWAIAPGVSPSPRYQHA-AVFV-NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSV 381 (998)
Q Consensus 316 -~~~~~W~w~~~~g~~P~pR~~hs-av~~-~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~~ 381 (998)
....+| .+.........++.- ++.. ++.+++.||. ..+++=.-.-.+|++....
T Consensus 215 ~~~~~~w--~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~----------G~l~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 215 PDDGETW--SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS----------GTLLVSTDGGKTWQKDRVG 271 (302)
T ss_dssp TTEEEEE-----B-TTSS--S-EEEEEESSSS-EEEEEST----------T-EEEESSTTSS-EE-GGG
T ss_pred CCCcccc--ccccCCcccCceeeEEEEecCCCCEEEEeCC----------ccEEEeCCCCccceECccc
Confidence 112234 342211112233322 2333 4789999884 2355555567789998764
No 239
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=34.77 E-value=51 Score=41.04 Aligned_cols=66 Identities=20% Similarity=0.087 Sum_probs=38.1
Q ss_pred CeEEEecCCCCHHH----------------HHHHHHHcCCCCCCCCccceeEEEeccccCCCCCh-------------HH
Q 001901 699 PIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-------------LE 749 (998)
Q Consensus 699 ~i~vvGDiHG~~~d----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-------------~e 749 (998)
+|+-..||||++.. +..++++..-... ..-+|-.||.+.--+.+ .-
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p 78 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVK-----NSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHP 78 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCC-----CeEEEECCCcCCCccchhhhhhccccCCCcCh
Confidence 47778999999753 3334444321111 12466699999854432 12
Q ss_pred HHHHHHHhhhcCCCcEEEeecCccc
Q 001901 750 TITLLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 750 vl~ll~~lk~~~p~~v~llrGNHE~ 774 (998)
++.+|=.| .-=.+..||||.
T Consensus 79 ~~~~mN~l-----gyDa~tlGNHEF 98 (626)
T TIGR01390 79 VYKAMNLL-----KYDVGNLGNHEF 98 (626)
T ss_pred HHHHHhhc-----CccEEecccccc
Confidence 44444444 234577899996
No 240
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=34.70 E-value=50 Score=44.41 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=15.1
Q ss_pred HHHHHHHHHH-cCCcEEEEccc
Q 001901 884 PDRVMEFCNN-NDLQLIVRAHE 904 (998)
Q Consensus 884 ~~~~~~fl~~-~~l~~iiR~H~ 904 (998)
++++.+..++ -++++||-||+
T Consensus 256 en~~~~la~~~~gID~Il~GHs 277 (1163)
T PRK09419 256 EDSVYDLAEKTKGIDAIVAGHQ 277 (1163)
T ss_pred chHHHHHHHhCCCCcEEEeCCC
Confidence 3455566644 58999999996
No 241
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=34.66 E-value=7.8e+02 Score=29.27 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=59.1
Q ss_pred cEEEEECCCC-cEEEecCCCCCCCCccceEEEEeC--CEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC
Q 001901 151 DVHCYDVLTN-KWSRITPFGEPPTPRAAHVATAVG--TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (998)
Q Consensus 151 dv~~yD~~t~-~W~~l~~~g~~P~pR~~hsa~~~~--~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~ 227 (998)
.+-.||+.+. .|..--..|. |.. .++.+. ..|.-.|| +.+-+||+.+.. .++.-
T Consensus 177 ~vrl~DtR~~~~~v~elnhg~-pVe----~vl~lpsgs~iasAgG--------n~vkVWDl~~G~----------qll~~ 233 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVVELNHGC-PVE----SVLALPSGSLIASAGG--------NSVKVWDLTTGG----------QLLTS 233 (487)
T ss_pred eEEEEEeccCCceeEEecCCC-cee----eEEEcCCCCEEEEcCC--------CeEEEEEecCCc----------eehhh
Confidence 4556777766 4543333321 211 233332 35556666 568888988542 33333
Q ss_pred Cccc-----EEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCC
Q 001901 228 RYGH-----VMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (998)
Q Consensus 228 R~~h-----s~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~ 302 (998)
+..| |+....++.-++-||.|+ .+-+||+. .|+.+.....+ . ---+.++..++.-.++|+.++
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd~t----~~Kvv~s~~~~-~--pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFDTT----NYKVVHSWKYP-G--PVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred hhcccceEEEEEeecCCceEeeccccc-----ceEEEEcc----ceEEEEeeecc-c--ceeeEEecCCCceEEEecccc
Confidence 4423 223334445677788776 35678843 35555444331 1 112334445667777776443
No 242
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=34.64 E-value=8.2e+02 Score=28.73 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=46.2
Q ss_pred eEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeE---EEEECCCCCCCCcc-eeEEEEE
Q 001901 267 EWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRW---EWAIAPGVSPSPRY-QHAAVFV 342 (998)
Q Consensus 267 ~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W---~w~~~~g~~P~pR~-~hsav~~ 342 (998)
.|+.+.... .+.........++.++++|... .++.-.. ....| +|.+..- +..++ -.++...
T Consensus 271 ~W~~~~~~~----~~~l~~v~~~~dg~l~l~g~~G-------~l~~S~d-~G~~~~~~~f~~~~~--~~~~~~l~~v~~~ 336 (398)
T PLN00033 271 YWQPHNRAS----ARRIQNMGWRADGGLWLLTRGG-------GLYVSKG-TGLTEEDFDFEEADI--KSRGFGILDVGYR 336 (398)
T ss_pred ceEEecCCC----ccceeeeeEcCCCCEEEEeCCc-------eEEEecC-CCCcccccceeeccc--CCCCcceEEEEEc
Confidence 488775432 2333444445688888887431 1222211 12245 3444332 12233 2333344
Q ss_pred -CCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEccc
Q 001901 343 -NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 380 (998)
Q Consensus 343 -~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~ 380 (998)
++.+++.|.. .-++.-...-.+|+++..
T Consensus 337 ~d~~~~a~G~~----------G~v~~s~D~G~tW~~~~~ 365 (398)
T PLN00033 337 SKKEAWAAGGS----------GILLRSTDGGKSWKRDKG 365 (398)
T ss_pred CCCcEEEEECC----------CcEEEeCCCCcceeEccc
Confidence 5678888753 225566667778998764
No 243
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=34.14 E-value=1.2e+02 Score=31.31 Aligned_cols=92 Identities=22% Similarity=0.288 Sum_probs=63.5
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHhhhcCCCcEEEeecCccccchhhhcCChHH---HHH---------HhCCCcchhh
Q 001901 732 IDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIE---CIE---------RMGERDGIWA 799 (998)
Q Consensus 732 ~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e---~~~---------~~g~~~~~~~ 799 (998)
..+|||| -|-+.-|.+.||-+|+.+|-.+.++ .|+-|.|..+....|... |.. ..|...-..+
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 3799998 5889999999999999999766655 899999988765554321 111 1122222345
Q ss_pred hhhhhhhhcccceeEEEcCeEEEecC-Ccc
Q 001901 800 WHRINRLFNWLPLAALIEKKIICMHG-GIG 828 (998)
Q Consensus 800 ~~~~~~~f~~LP~aa~i~~~il~vHg-Gi~ 828 (998)
|..+..+.-.+++...+-.+++.+-| |-.
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NGPGTC 144 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNGPGTC 144 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECCCCcE
Confidence 66677776677777777667777777 654
No 244
>PRK03629 tolB translocation protein TolB; Provisional
Probab=33.86 E-value=8.4e+02 Score=28.67 Aligned_cols=191 Identities=12% Similarity=0.117 Sum_probs=90.4
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCCCccceEEEEe--CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCC
Q 001901 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV--GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPG 226 (998)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~ 226 (998)
...+|++|+.+++-+.+... +. ...+.... +.+|++..... + ..++|++|+.+.. ..++. ..+.
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~---~~--~~~~~~~SPDG~~La~~~~~~--g--~~~I~~~d~~tg~--~~~lt---~~~~ 287 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASF---PR--HNGAPAFSPDGSKLAFALSKT--G--SLNLYVMDLASGQ--IRQVT---DGRS 287 (429)
T ss_pred CcEEEEEECCCCCeEEccCC---CC--CcCCeEECCCCCEEEEEEcCC--C--CcEEEEEECCCCC--EEEcc---CCCC
Confidence 35788899888876666543 11 11111221 33555543321 1 2469999998753 55553 1111
Q ss_pred CCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCC
Q 001901 227 PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP 306 (998)
Q Consensus 227 ~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~ 306 (998)
.........++..++|....+. ...+|.+|+.+. ...++...+. .........+++.+++.+....
T Consensus 288 --~~~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g--~~~~lt~~~~-----~~~~~~~SpDG~~Ia~~~~~~g--- 353 (429)
T PRK03629 288 --NNTEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGG--APQRITWEGS-----QNQDADVSSDGKFMVMVSSNGG--- 353 (429)
T ss_pred --CcCceEECCCCCEEEEEeCCCC--CceEEEEECCCC--CeEEeecCCC-----CccCEEECCCCCEEEEEEccCC---
Confidence 1112222223333333332221 258999999877 5555533221 1112233345555555443322
Q ss_pred cccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEcc
Q 001901 307 LASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTK 379 (998)
Q Consensus 307 ~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~ 379 (998)
...++.++.... .+.. +... .........-+++++++.+.++. ...+++.+.....=..+.
T Consensus 354 ~~~I~~~dl~~g-~~~~--Lt~~---~~~~~p~~SpDG~~i~~~s~~~~------~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 354 QQHIAKQDLATG-GVQV--LTDT---FLDETPSIAPNGTMVIYSSSQGM------GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CceEEEEECCCC-CeEE--eCCC---CCCCCceECCCCCEEEEEEcCCC------ceEEEEEECCCCCeEECc
Confidence 235666665544 3332 2211 01111223346777777665432 234777777655444444
No 245
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.76 E-value=1e+03 Score=29.42 Aligned_cols=69 Identities=19% Similarity=0.369 Sum_probs=41.7
Q ss_pred CCEEEEEeCCCCCCCCcccEEEEEcCCCCC----ceEEeeecCCCC-CCCcc-cEEEEECCcEEEEEcCCCCCCCcccEE
Q 001901 184 GTMVVIQGGIGPAGLSAEDLHVLDLTQQRP----RWHRVVVQGPGP-GPRYG-HVMALVGQRYLMAIGGNDGKRPLADVW 257 (998)
Q Consensus 184 ~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~----~W~~l~~~g~~P-~~R~~-hs~~~~~~~~Lyv~GG~~g~~~lndv~ 257 (998)
++.+++-||.+ ..+++||+++.+. ....+.+. .++ .++.. ++.+.-..+.++|-||.. .++-
T Consensus 129 ~~~lvaSgGLD------~~IflWDin~~~~~l~~s~n~~t~~-sl~sG~k~siYSLA~N~t~t~ivsGgte-----k~lr 196 (735)
T KOG0308|consen 129 NNELVASGGLD------RKIFLWDINTGTATLVASFNNVTVN-SLGSGPKDSIYSLAMNQTGTIIVSGGTE-----KDLR 196 (735)
T ss_pred CceeEEecCCC------ccEEEEEccCcchhhhhhccccccc-cCCCCCccceeeeecCCcceEEEecCcc-----cceE
Confidence 56888999974 5688888885421 12233322 333 44433 333333444688888864 4788
Q ss_pred EEECCCC
Q 001901 258 ALDTAAK 264 (998)
Q Consensus 258 ~yD~~s~ 264 (998)
.||+.+.
T Consensus 197 ~wDprt~ 203 (735)
T KOG0308|consen 197 LWDPRTC 203 (735)
T ss_pred Eeccccc
Confidence 8999876
No 246
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=32.56 E-value=7.4e+02 Score=27.59 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=45.8
Q ss_pred cEEEEECC-CCcEEEecCCCCCCCCccceEEEEe-CC-EEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC
Q 001901 151 DVHCYDVL-TNKWSRITPFGEPPTPRAAHVATAV-GT-MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (998)
Q Consensus 151 dv~~yD~~-t~~W~~l~~~g~~P~pR~~hsa~~~-~~-~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~ 227 (998)
.+..|++. +..++.+... +.+-.-+.++.. ++ .+|+.. .. .+.+.+|++.++......+. ..+..
T Consensus 58 ~i~~~~~~~~g~l~~~~~~---~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~ 125 (330)
T PRK11028 58 RVLSYRIADDGALTFAAES---PLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGL 125 (330)
T ss_pred cEEEEEECCCCceEEeeee---cCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCC
Confidence 45556664 4566655432 111111223333 33 566654 21 25678888864310111222 12222
Q ss_pred CcccEEEEECC-cEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 228 RYGHVMALVGQ-RYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 228 R~~hs~~~~~~-~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
..-|.+++..+ +++|+..-. .+.+++||+.+.
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~~~ 158 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLK-----EDRIRLFTLSDD 158 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCC-----CCEEEEEEECCC
Confidence 33466555433 356664421 257889998763
No 247
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=31.57 E-value=8.6e+02 Score=28.06 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=58.6
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCC---CCCCCcccEEEEEcCCCCCceEEeeecCCCC
Q 001901 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIG---PAGLSAEDLHVLDLTQQRPRWHRVVVQGPGP 225 (998)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~---~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P 225 (998)
.+.++++|..+.+-...-+.| -.|| +...--+..+|+.-.+. ..+...+.+.+||+.+... -.+++ .+ +
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G--~~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~-~p--~ 97 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGG--FLPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIE-LP--E 97 (352)
T ss_pred CceEEEEECCCCEEEEEEEcc--CCCc--eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEc-cC--C
Confidence 479999999997655443333 2233 22222345889887632 3344568899999998641 11222 11 3
Q ss_pred CCC-----cccEEEEE-CCcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 226 GPR-----YGHVMALV-GQRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 226 ~~R-----~~hs~~~~-~~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
.|| +.+..++- +++.|||.-= ..-+.+-++|+.+.
T Consensus 98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~----~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTPDNKTLLFYQF----SPSPAVGVVDLEGK 138 (352)
T ss_pred CchhhccCccceEEECCCCCEEEEecC----CCCCEEEEEECCCC
Confidence 334 22333333 3346777531 22467888999887
No 248
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=31.43 E-value=64 Score=41.31 Aligned_cols=67 Identities=22% Similarity=0.125 Sum_probs=38.7
Q ss_pred CCeEEEecCCCCHHH----------------HHHHHHHcCCCCCCCCccceeEEEeccccCCCCCh--------------
Q 001901 698 APIKIFGDLHGQFGD----------------LMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHS-------------- 747 (998)
Q Consensus 698 ~~i~vvGDiHG~~~d----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-------------- 747 (998)
-+|+-..||||++.. +..++++..-.. ...-+|..||++.--+.+
T Consensus 116 LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~-----~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~ 190 (814)
T PRK11907 116 VRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKEN-----PNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQ 190 (814)
T ss_pred EEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhC-----CCEEEEecCCCCCCCcccchhhhccccccCcc
Confidence 457889999999643 223333332111 112466699998754322
Q ss_pred HHHHHHHHHhhhcCCCcEEEeecCccc
Q 001901 748 LETITLLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 748 ~evl~ll~~lk~~~p~~v~llrGNHE~ 774 (998)
.-++.+|=.|. --.+..||||.
T Consensus 191 ~P~i~amN~LG-----yDA~tLGNHEF 212 (814)
T PRK11907 191 HPMYAALEALG-----FDAGTLGNHEF 212 (814)
T ss_pred hHHHHHHhccC-----CCEEEechhhc
Confidence 12455555553 44678899997
No 249
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=29.15 E-value=7.8e+02 Score=29.33 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=16.6
Q ss_pred ccEEEEECCcEEEEEcCCCCCC
Q 001901 230 GHVMALVGQRYLMAIGGNDGKR 251 (998)
Q Consensus 230 ~hs~~~~~~~~Lyv~GG~~g~~ 251 (998)
.|++++-.++.||..|=++...
T Consensus 114 ~hsl~ld~Dg~lyswG~N~~G~ 135 (476)
T COG5184 114 NHSLGLDHDGNLYSWGDNDDGA 135 (476)
T ss_pred ceEEeecCCCCEEEeccCcccc
Confidence 4888888887899999664433
No 250
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=27.82 E-value=63 Score=35.29 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHcCCcEEEEcccccccceEEecCCeEEEEecc
Q 001901 883 GPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSA 924 (998)
Q Consensus 883 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~iTvfSa 924 (998)
....+.+||+.+|..+ -+|++.+||.|++++-+|+||--
T Consensus 139 ~~~~~~~fl~~lGy~~---~~Eyv~~G~~F~~g~i~I~l~ri 177 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRF---DYEYVVEGYRFFKGDIVIELFRI 177 (250)
T ss_dssp SSSSHHHHHHHTTEEE---EEEEEEEEEEEEECCEEEEEEEE
T ss_pred CCCCHHHHHHHcCCce---EEEEEEEEEEEEECCEEEEEEEE
Confidence 4566889999999766 48999999999999988998854
No 251
>PRK04043 tolB translocation protein TolB; Provisional
Probab=27.58 E-value=1.1e+03 Score=27.87 Aligned_cols=193 Identities=11% Similarity=0.098 Sum_probs=98.3
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCCCccceEEEEe-CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC
Q 001901 149 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAV-GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (998)
Q Consensus 149 ~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~ 227 (998)
..++|++|+.+++=+.+... +. ........- +.++++.-... + ..++|++|+.+. +++++. ..+.
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~---~g-~~~~~~~SPDG~~la~~~~~~--g--~~~Iy~~dl~~g--~~~~LT---~~~~- 277 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASS---QG-MLVVSDVSKDGSKLLLTMAPK--G--QPDIYLYDTNTK--TLTQIT---NYPG- 277 (419)
T ss_pred CCEEEEEECCCCcEEEEecC---CC-cEEeeEECCCCCEEEEEEccC--C--CcEEEEEECCCC--cEEEcc---cCCC-
Confidence 45899999998877777543 11 111111222 33555543321 1 368999999876 477775 2221
Q ss_pred CcccEEEEEC-CcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCC--
Q 001901 228 RYGHVMALVG-QRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASS-- 304 (998)
Q Consensus 228 R~~hs~~~~~-~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~-- 304 (998)
.......-. +++||+.....+ ..++|++|+.+. +.+++...+. . .. ....+++.+++-......
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g--~~~rlt~~g~-----~-~~-~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSG--SVEQVVFHGK-----N-NS-SVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred -ccCccEECCCCCEEEEEECCCC---CceEEEEECCCC--CeEeCccCCC-----c-Cc-eECCCCCEEEEEEcCCCccc
Confidence 122222222 335666554332 368999999988 7777654322 1 12 333355544444332211
Q ss_pred -CCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCCCeEEEccc
Q 001901 305 -VPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKS 380 (998)
Q Consensus 305 -~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v~~ 380 (998)
....+++.++.... .+ ..+... .....-...-+++.+++-...+. ...++++++....=..++.
T Consensus 345 ~~~~~~I~v~d~~~g-~~--~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~------~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 345 GKNTFNLYLISTNSD-YI--RRLTAN---GVNQFPRFSSDGGSIMFIKYLGN------QSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCCCcEEEEEECCCC-Ce--EECCCC---CCcCCeEECCCCCEEEEEEccCC------cEEEEEEecCCCeeEEeec
Confidence 01246777766544 33 333321 12222222335554444332221 3468899987776555543
No 252
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=27.47 E-value=6.8e+02 Score=25.60 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=32.7
Q ss_pred CEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 185 TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 185 ~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
+..++.|+. ...+++||+.+.. .-..+. .....-.++....++.+++.|+.+ ..+..||+.+.
T Consensus 63 ~~~l~~~~~------~~~i~i~~~~~~~-~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~ 125 (289)
T cd00200 63 GTYLASGSS------DKTIRLWDLETGE-CVRTLT-----GHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETG 125 (289)
T ss_pred CCEEEEEcC------CCeEEEEEcCccc-ceEEEe-----ccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCc
Confidence 346666664 3568899988742 111111 111122233333443566666634 36888998755
No 253
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=26.85 E-value=82 Score=34.59 Aligned_cols=62 Identities=29% Similarity=0.319 Sum_probs=40.3
Q ss_pred CCeEEEecCCCCHHHHHHHHHHcCCCCCCCCccceeEEEeccccCCCCChHHHHH---HHHHhhhcCCCcEEEeecCccc
Q 001901 698 APIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETIT---LLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 698 ~~i~vvGDiHG~~~dL~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~---ll~~lk~~~p~~v~llrGNHE~ 774 (998)
.+++.|+|.|....+.. ..|+.+ -++-+||+-.-|.. -||+. .|-+|.-+ .=++|+||||.
T Consensus 62 ~r~VcisdtH~~~~~i~------~~p~gD------vlihagdfT~~g~~-~ev~~fn~~~gslph~---yKIVIaGNHEL 125 (305)
T KOG3947|consen 62 ARFVCISDTHELTFDIN------DIPDGD------VLIHAGDFTNLGLP-EEVIKFNEWLGSLPHE---YKIVIAGNHEL 125 (305)
T ss_pred eEEEEecCcccccCccc------cCCCCc------eEEeccCCccccCH-HHHHhhhHHhccCcce---eeEEEeeccce
Confidence 46899999998876654 234332 45779999876643 34443 33343332 45789999998
Q ss_pred c
Q 001901 775 A 775 (998)
Q Consensus 775 ~ 775 (998)
-
T Consensus 126 t 126 (305)
T KOG3947|consen 126 T 126 (305)
T ss_pred e
Confidence 4
No 254
>PTZ00421 coronin; Provisional
Probab=26.40 E-value=1.2e+03 Score=28.13 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=26.9
Q ss_pred EEEEEcCCCCCCCcccEEEEECCCCCceEE-EcccCCCCCCCccceEEEEEeCCEEEEEeccCC
Q 001901 240 YLMAIGGNDGKRPLADVWALDTAAKPYEWR-KLEPEGEGPPPCMYATASARSDGLLLLCGGRDA 302 (998)
Q Consensus 240 ~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~-~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~ 302 (998)
.+++.||.++ .+..||+.+. +-. .+..... .........++.+++.|+.++
T Consensus 139 ~iLaSgs~Dg-----tVrIWDl~tg--~~~~~l~~h~~-----~V~sla~spdG~lLatgs~Dg 190 (493)
T PTZ00421 139 NVLASAGADM-----VVNVWDVERG--KAVEVIKCHSD-----QITSLEWNLDGSLLCTTSKDK 190 (493)
T ss_pred CEEEEEeCCC-----EEEEEECCCC--eEEEEEcCCCC-----ceEEEEEECCCCEEEEecCCC
Confidence 4777777664 5778888766 321 1211111 112222334677788877653
No 255
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=26.38 E-value=9.3e+02 Score=26.82 Aligned_cols=101 Identities=12% Similarity=0.179 Sum_probs=59.1
Q ss_pred CcEEEEECCCC-----cEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCC
Q 001901 150 ADVHCYDVLTN-----KWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPG 224 (998)
Q Consensus 150 ~dv~~yD~~t~-----~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~ 224 (998)
+.++.|+.... +++.+... ..+-.-.+.+.+++++++.-| +.+++|++.... +|.... ..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~---~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~-~l~~~~---~~ 126 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST---EVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSK-TLLKKA---FY 126 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE---EESS-EEEEEEETTEEEEEET--------TEEEEEEEETTS-SEEEEE---EE
T ss_pred cEEEEEEEEcccccceEEEEEEEE---eecCcceEhhhhCCEEEEeec--------CEEEEEEccCcc-cchhhh---ee
Confidence 67889998884 66666443 222335677788888777766 468888888763 376666 33
Q ss_pred CCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcc
Q 001901 225 PGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLE 272 (998)
Q Consensus 225 P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~ 272 (998)
..+-+-.++.++++ +|++.--..+ -.++.|+.... +-..++
T Consensus 127 ~~~~~i~sl~~~~~-~I~vgD~~~s----v~~~~~~~~~~--~l~~va 167 (321)
T PF03178_consen 127 DSPFYITSLSVFKN-YILVGDAMKS----VSLLRYDEENN--KLILVA 167 (321)
T ss_dssp -BSSSEEEEEEETT-EEEEEESSSS----EEEEEEETTTE---EEEEE
T ss_pred cceEEEEEEecccc-EEEEEEcccC----EEEEEEEccCC--EEEEEE
Confidence 33346666667776 5554322221 23446676554 444444
No 256
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=25.98 E-value=1.1e+03 Score=27.35 Aligned_cols=157 Identities=13% Similarity=0.105 Sum_probs=75.9
Q ss_pred CcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCC------CcccEEEEECCCCCceEEEcc
Q 001901 199 SAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKR------PLADVWALDTAAKPYEWRKLE 272 (998)
Q Consensus 199 ~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~------~lndv~~yD~~s~~~~W~~v~ 272 (998)
-...++++|+.+.. ...- .++.++... ++...++..+++...+... +-..+++..+.+..-.=..|-
T Consensus 148 e~~~l~v~Dl~tg~--~l~d----~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf 220 (414)
T PF02897_consen 148 EWYTLRVFDLETGK--FLPD----GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF 220 (414)
T ss_dssp SEEEEEEEETTTTE--EEEE----EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE
T ss_pred ceEEEEEEECCCCc--CcCC----cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE
Confidence 34579999999862 2211 112222222 5455554455544444322 267889988877621101221
Q ss_pred cCCCCCCCcc-ceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCC----CeEEEEECCCCCCCCcceeEEEEECCEEE
Q 001901 273 PEGEGPPPCM-YATASARSDGLLLLCGGRDASSVPLASAYGLAKHRD----GRWEWAIAPGVSPSPRYQHAAVFVNARLH 347 (998)
Q Consensus 273 ~~~~~P~~r~-~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~----~~W~w~~~~g~~P~pR~~hsav~~~~~L~ 347 (998)
.... ... ...+....+++.+++.-..... .+++|.++.... ..|...... ..-..+.+...++.+|
T Consensus 221 e~~~---~~~~~~~~~~s~d~~~l~i~~~~~~~--~s~v~~~d~~~~~~~~~~~~~l~~~----~~~~~~~v~~~~~~~y 291 (414)
T PF02897_consen 221 EEPD---EPFWFVSVSRSKDGRYLFISSSSGTS--ESEVYLLDLDDGGSPDAKPKLLSPR----EDGVEYYVDHHGDRLY 291 (414)
T ss_dssp C-TT---CTTSEEEEEE-TTSSEEEEEEESSSS--EEEEEEEECCCTTTSS-SEEEEEES----SSS-EEEEEEETTEEE
T ss_pred eecC---CCcEEEEEEecCcccEEEEEEEcccc--CCeEEEEeccccCCCcCCcEEEeCC----CCceEEEEEccCCEEE
Confidence 1111 122 3333344455544433222211 467887777652 345544332 2223334445588999
Q ss_pred EEcccCCCCCccccCCeEEEEECCCCe---EEE
Q 001901 348 VSGGALGGGRMVEDSSSVAVLDTAAGV---WCD 377 (998)
Q Consensus 348 V~GG~~~~~~~~~~~~dv~vyD~~t~~---W~~ 377 (998)
+.-..+.. ...+..+++.... |..
T Consensus 292 i~Tn~~a~------~~~l~~~~l~~~~~~~~~~ 318 (414)
T PF02897_consen 292 ILTNDDAP------NGRLVAVDLADPSPAEWWT 318 (414)
T ss_dssp EEE-TT-T------T-EEEEEETTSTSGGGEEE
T ss_pred EeeCCCCC------CcEEEEeccccccccccee
Confidence 88653222 4568899988876 664
No 257
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=25.75 E-value=9.6e+02 Score=26.73 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=65.7
Q ss_pred ccEEEEEcCCC---CCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCce-EEEcccCCC
Q 001901 201 EDLHVLDLTQQ---RPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYE-WRKLEPEGE 276 (998)
Q Consensus 201 ~dv~~~Dl~t~---t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~-W~~v~~~~~ 276 (998)
..+++|++... ..++..+... ..+.+ -.+++.+++ +|++.-| +.+..|++... + |........
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~--V~ai~~~~~-~lv~~~g-------~~l~v~~l~~~--~~l~~~~~~~~ 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGP--VTAICSFNG-RLVVAVG-------NKLYVYDLDNS--KTLLKKAFYDS 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS---EEEEEEETT-EEEEEET-------TEEEEEEEETT--SSEEEEEEE-B
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCc--ceEhhhhCC-EEEEeec-------CEEEEEEccCc--ccchhhheecc
Confidence 66899998873 1245555422 22222 455666777 5666555 57888888777 5 777665533
Q ss_pred CCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEE-CCEEEEEcc
Q 001901 277 GPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFV-NARLHVSGG 351 (998)
Q Consensus 277 ~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~-~~~L~V~GG 351 (998)
........+.++.|++ |-.. ....++.|+.... +...+... ..++...++.++ ++. .++++
T Consensus 129 ----~~~i~sl~~~~~~I~v-gD~~----~sv~~~~~~~~~~---~l~~va~d-~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 129 ----PFYITSLSVFKNYILV-GDAM----KSVSLLRYDEENN---KLILVARD-YQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp ----SSSEEEEEEETTEEEE-EESS----SSEEEEEEETTTE----EEEEEEE-SS-BEEEEEEEE-SSS-EEEEE
T ss_pred ----eEEEEEEeccccEEEE-EEcc----cCEEEEEEEccCC---EEEEEEec-CCCccEEEEEEecCCc-EEEEE
Confidence 2355556666776665 3221 1223444554222 23333332 356776777777 655 44444
No 258
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=25.61 E-value=3.3e+02 Score=30.95 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=49.5
Q ss_pred CCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCC
Q 001901 227 PRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVP 306 (998)
Q Consensus 227 ~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~ 306 (998)
.|+.--.+-+.+++|+-..| + ..+-++++.+. .....-.. -...-|+.-..++++|.|..+.
T Consensus 319 HrAaVNvVdfd~kyIVsASg-D-----RTikvW~~st~--efvRtl~g------HkRGIAClQYr~rlvVSGSSDn---- 380 (499)
T KOG0281|consen 319 HRAAVNVVDFDDKYIVSASG-D-----RTIKVWSTSTC--EFVRTLNG------HKRGIACLQYRDRLVVSGSSDN---- 380 (499)
T ss_pred hhhheeeeccccceEEEecC-C-----ceEEEEeccce--eeehhhhc------ccccceehhccCeEEEecCCCc----
Confidence 34444444556643332222 1 24555666555 33332211 1234456666999999875432
Q ss_pred cccEEEEecCCCCeEEEEECCCCCCCCccee----EEEEECCEEEEEcccCCC
Q 001901 307 LASAYGLAKHRDGRWEWAIAPGVSPSPRYQH----AAVFVNARLHVSGGALGG 355 (998)
Q Consensus 307 ~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~h----sav~~~~~L~V~GG~~~~ 355 (998)
.+-.++.. .|..-.-..+| -++.++++-+|.||+++.
T Consensus 381 --tIRlwdi~----------~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGk 421 (499)
T KOG0281|consen 381 --TIRLWDIE----------CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 421 (499)
T ss_pred --eEEEEecc----------ccHHHHHHhchHHhhhheeecCceeeeccccce
Confidence 22222222 22111112333 267789999999998764
No 259
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=25.22 E-value=75 Score=35.08 Aligned_cols=39 Identities=28% Similarity=0.538 Sum_probs=27.1
Q ss_pred eEEEeccccCCCCChHHHH-HHHHHhhhcCCCcEEEeecCcccc
Q 001901 733 DYLFLGDYVDRGQHSLETI-TLLLALKVEYPNNVHLIRGNHEAA 775 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s~evl-~ll~~lk~~~p~~v~llrGNHE~~ 775 (998)
+++|+||+| |.-+.+.| .+|-.||.+|+-.+ +-.|=|..
T Consensus 2 ~ilfiGDi~--G~~Gr~~l~~~L~~lk~~~~~D~--vIaNgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVY--GKAGRKIVKNNLPQLKSKYQADL--VIANGENT 41 (266)
T ss_pred eEEEEEecC--CHHHHHHHHHHHHHHHHhCCCCE--EEEcCccc
Confidence 799999999 44445544 67778888876554 44576765
No 260
>PRK13684 Ycf48-like protein; Provisional
Probab=24.80 E-value=1.1e+03 Score=26.88 Aligned_cols=197 Identities=11% Similarity=0.102 Sum_probs=87.6
Q ss_pred CCcEEEecCCCCCCCCccceEEEEeCC-EEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEEC
Q 001901 159 TNKWSRITPFGEPPTPRAAHVATAVGT-MVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVG 237 (998)
Q Consensus 159 t~~W~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~ 237 (998)
...|+.+.. |......+++..+. ..|++|-. ..++.=.-... .|+..... +|........+.+.
T Consensus 34 ~~~W~~~~~----~~~~~l~~v~F~d~~~g~avG~~-------G~il~T~DgG~--tW~~~~~~--~~~~~~~l~~v~~~ 98 (334)
T PRK13684 34 SSPWQVIDL----PTEANLLDIAFTDPNHGWLVGSN-------RTLLETNDGGE--TWEERSLD--LPEENFRLISISFK 98 (334)
T ss_pred CCCcEEEec----CCCCceEEEEEeCCCcEEEEECC-------CEEEEEcCCCC--CceECccC--CcccccceeeeEEc
Confidence 457988863 33344555555554 66777632 11222111122 39887522 22222222222233
Q ss_pred CcEEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEEecCC
Q 001901 238 QRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHR 317 (998)
Q Consensus 238 ~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~~~~~ 317 (998)
++..|+.|.. ..+++ ....--+|+++......|. .......+.++.+++.|.. ..++.-.+.-
T Consensus 99 ~~~~~~~G~~------g~i~~--S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG 161 (334)
T PRK13684 99 GDEGWIVGQP------SLLLH--TTDGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV-------GAIYRTTDGG 161 (334)
T ss_pred CCcEEEeCCC------ceEEE--ECCCCCCCeEccCCcCCCC--CceEEEEECCCcceeeecc-------ceEEEECCCC
Confidence 3356666532 12333 3222238998853211111 1112223334556666532 2233333332
Q ss_pred CCeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEE-ECCCCeEEEcccCcCCCCCCCCccccCC
Q 001901 318 DGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVL-DTAAGVWCDTKSVVTSPRTGRYSADAAG 396 (998)
Q Consensus 318 ~~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vy-D~~t~~W~~v~~~~~~p~~~~~~~~~~~ 396 (998)
. +|+ ..... ..-..+.+....+..++..|..+ .++.. |....+|+.+...
T Consensus 162 ~-tW~--~~~~~--~~g~~~~i~~~~~g~~v~~g~~G---------~i~~s~~~gg~tW~~~~~~--------------- 212 (334)
T PRK13684 162 K-NWE--ALVED--AAGVVRNLRRSPDGKYVAVSSRG---------NFYSTWEPGQTAWTPHQRN--------------- 212 (334)
T ss_pred C-Cce--eCcCC--CcceEEEEEECCCCeEEEEeCCc---------eEEEEcCCCCCeEEEeeCC---------------
Confidence 2 454 44322 22234445555444444433322 23332 4455689887543
Q ss_pred CCCccCCCCcceeEEEEE-CCEEEEEcC
Q 001901 397 GDAAVELTRRCRHAAAAV-GDLIFIYGG 423 (998)
Q Consensus 397 ~~~~~~p~~R~~hsa~~~-~~~LyVfGG 423 (998)
..+.-+++... +++++++|.
T Consensus 213 -------~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 213 -------SSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred -------CcccceeeeEcCCCCEEEEec
Confidence 23334444443 668888875
No 261
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=24.51 E-value=67 Score=30.09 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=51.4
Q ss_pred CCCCceeeCHHHHHHHHHHcCCcEEEEcccccccceEEe------cCCeEEEEeccc---cccCCCCCeEEEEEEcCCc
Q 001901 875 RGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERF------AQGHLITLFSAT---NYCGTANNAGAILVLGRDL 944 (998)
Q Consensus 875 rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~------~~~~~iTvfSa~---~y~~~~~n~ga~l~~~~~~ 944 (998)
|.+|-+.+|.+.+.+-+++...+++|.+-++-+++-+-+ ++-.+++.|+.- .-||. .+.+++.+.+..+
T Consensus 13 ~rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk-~~~~~iai~d~g~ 90 (104)
T PRK05583 13 KKAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGR-DEIKILGVKDKNM 90 (104)
T ss_pred HHhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCC-CCeEEEEEeChHH
Confidence 335557899999999999999999999999988876532 344577777752 35665 3477777777654
No 262
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=24.43 E-value=1.2e+02 Score=35.52 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCcEEEEcccccc
Q 001901 886 RVMEFCNNNDLQLIVRAHECVM 907 (998)
Q Consensus 886 ~~~~fl~~~~l~~iiR~H~~~~ 907 (998)
.++-+|+++++++.|-||+=..
T Consensus 239 ~L~PLL~ky~VdlYisGHDH~l 260 (394)
T PTZ00422 239 YLLPLLKDAQVDLYISGYDRNM 260 (394)
T ss_pred HHHHHHHHcCcCEEEEccccce
Confidence 6778999999999999998543
No 263
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=24.21 E-value=1.4e+02 Score=36.55 Aligned_cols=37 Identities=24% Similarity=0.102 Sum_probs=23.2
Q ss_pred eEEEeccccCCCCCh-----HHHHHHHHHhhhcCCCcEEEeecCccc
Q 001901 733 DYLFLGDYVDRGQHS-----LETITLLLALKVEYPNNVHLIRGNHEA 774 (998)
Q Consensus 733 ~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~p~~v~llrGNHE~ 774 (998)
-+|.-||.+..-+.+ ...+.+|=++ .--.+..||||.
T Consensus 52 l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~-----g~Da~~lGNHEF 93 (550)
T TIGR01530 52 LVLHAGDAIIGTLYFTLFGGRADAALMNAA-----GFDFFTLGNHEF 93 (550)
T ss_pred EEEECCCCCCCccchhhcCCHHHHHHHhcc-----CCCEEEeccccc
Confidence 467799998754322 2234444444 345778899997
No 264
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.07 E-value=9.7e+02 Score=26.22 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=31.6
Q ss_pred CeEEEEECCCCCCCCcceeEEEEECCEEEEEcccCCCCCccccCCeEEEEECCC-CeEEEcccC
Q 001901 319 GRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAA-GVWCDTKSV 381 (998)
Q Consensus 319 ~~W~w~~~~g~~P~pR~~hsav~~~~~L~V~GG~~~~~~~~~~~~dv~vyD~~t-~~W~~v~~~ 381 (998)
+.|+-...... |.+.+..+-...++.|-|.||. |.+.++-... ++|.++...
T Consensus 245 e~wk~tll~~f-~~~~w~vSWS~sGn~LaVs~Gd----------Nkvtlwke~~~Gkw~~v~~~ 297 (299)
T KOG1332|consen 245 EPWKKTLLEEF-PDVVWRVSWSLSGNILAVSGGD----------NKVTLWKENVDGKWEEVGEV 297 (299)
T ss_pred CcccccccccC-CcceEEEEEeccccEEEEecCC----------cEEEEEEeCCCCcEEEcccc
Confidence 45665555543 4556655666667777777773 3455555444 489988653
No 265
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=21.55 E-value=1.3e+03 Score=26.68 Aligned_cols=187 Identities=20% Similarity=0.195 Sum_probs=88.1
Q ss_pred cCCcEEEEECCCCc-EEEecCCCCCCCCccceEEEEe---CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCC
Q 001901 148 ATADVHCYDVLTNK-WSRITPFGEPPTPRAAHVATAV---GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (998)
Q Consensus 148 ~~~dv~~yD~~t~~-W~~l~~~g~~P~pR~~hsa~~~---~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~ 223 (998)
-.+.+.++|..+++ -.+++..+ ..|....+ +..+|+.+.. ..+.++|+.+.. .+. .
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~------~~h~~~~~s~Dgr~~yv~~rd-------g~vsviD~~~~~----~v~---~ 73 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGG------APHAGLKFSPDGRYLYVANRD-------GTVSVIDLATGK----VVA---T 73 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-ST------TEEEEEE-TT-SSEEEEEETT-------SEEEEEETTSSS----EEE---E
T ss_pred CCCEEEEEECCCCeEEEEEcCCC------CceeEEEecCCCCEEEEEcCC-------CeEEEEECCccc----EEE---E
Confidence 34588899998876 44444432 12554444 3489998631 368999999863 332 2
Q ss_pred CCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEE-ccc--CCC-CCCCccceEEEEEeCCEEEEEec
Q 001901 224 GPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRK-LEP--EGE-GPPPCMYATASARSDGLLLLCGG 299 (998)
Q Consensus 224 ~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~-v~~--~~~-~P~~r~~~~a~~~~~~~lyvfGG 299 (998)
.+.+...+.+++-.+++.++.+.+. -+.+..+|..+. +=.+ +.. ... .+.+|. ........+..|++--
T Consensus 74 i~~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tl--e~v~~I~~~~~~~~~~~~Rv-~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 74 IKVGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETL--EPVKTIPTGGMPVDGPESRV-AAIVASPGRPEFVVNL 146 (369)
T ss_dssp EE-SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT----EEEEEE--EE-TTTS---E-EEEEE-SSSSEEEEEE
T ss_pred EecCCCcceEEEcCCCCEEEEEecC----CCceeEeccccc--cceeecccccccccccCCCc-eeEEecCCCCEEEEEE
Confidence 3344555555554443333333322 357888998776 3222 211 111 111222 2222234555566543
Q ss_pred cCCCCCCcccEEEEecCCCCeEEEEECCCCCCCCcceeEEEEECC-EEEEEcccCCCCCccccCCeEEEEECCCCeEEEc
Q 001901 300 RDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNA-RLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDT 378 (998)
Q Consensus 300 ~~~~~~~~~dv~~~~~~~~~~W~w~~~~g~~P~pR~~hsav~~~~-~L~V~GG~~~~~~~~~~~~dv~vyD~~t~~W~~v 378 (998)
.+ ...+|.++........-.. ....++.|-+.+-.+ +.|+. +... .+.+-+.|.++.+=..+
T Consensus 147 kd-----~~~I~vVdy~d~~~~~~~~----i~~g~~~~D~~~dpdgry~~v-a~~~-------sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 147 KD-----TGEIWVVDYSDPKNLKVTT----IKVGRFPHDGGFDPDGRYFLV-AANG-------SNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp TT-----TTEEEEEETTTSSCEEEEE----EE--TTEEEEEE-TTSSEEEE-EEGG-------GTEEEEEETTTTEEEEE
T ss_pred cc-----CCeEEEEEeccccccceee----ecccccccccccCcccceeee-cccc-------cceeEEEeeccceEEEE
Confidence 22 3456666543321111111 124456666655543 43333 3222 45788999988865443
No 266
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=21.21 E-value=7.6e+02 Score=26.54 Aligned_cols=136 Identities=13% Similarity=0.161 Sum_probs=66.6
Q ss_pred cEEEEECCC-CcEEEecCCCCCCCCccceEEEE-e-CCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCC
Q 001901 151 DVHCYDVLT-NKWSRITPFGEPPTPRAAHVATA-V-GTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGP 227 (998)
Q Consensus 151 dv~~yD~~t-~~W~~l~~~g~~P~pR~~hsa~~-~-~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~ 227 (998)
.+..|+... .+|+...... ......+.+.+ . ++.++++--.. ... .-.+.+..+.. ..|+.+... .+|.+
T Consensus 135 ~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~S~D~G-~TWs~~~~~-~~~~~ 207 (275)
T PF13088_consen 135 AFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISRSTDGG-RTWSPPQPT-NLPNP 207 (275)
T ss_dssp EEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEEESSTT-SS-EEEEEE-ECSSC
T ss_pred eEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEEECCCC-CcCCCceec-ccCcc
Confidence 334455543 4698886542 22244444433 3 44777775432 111 22333344333 259986644 56777
Q ss_pred CcccEEEEECCcEEEEEcCCCCCCCcccEEEEECC-CCCceEEEcccCCCCCCC-ccceEEEEEeCCEEEE
Q 001901 228 RYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTA-AKPYEWRKLEPEGEGPPP-CMYATASARSDGLLLL 296 (998)
Q Consensus 228 R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~-s~~~~W~~v~~~~~~P~~-r~~~~a~~~~~~~lyv 296 (998)
.....++.+.++.++++....... .+-...+... .. +|.........+.. ..|-.++...+++|+|
T Consensus 208 ~~~~~~~~~~~g~~~~~~~~~~~r-~~l~l~~S~D~g~--tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 208 NSSISLVRLSDGRLLLVYNNPDGR-SNLSLYVSEDGGK--TWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CEEEEEEECTTSEEEEEEECSSTS-EEEEEEEECTTCE--EEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cCCceEEEcCCCCEEEEEECCCCC-CceEEEEEeCCCC--cCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 777666666666777776632122 1222222222 34 89866444332211 2334444455778886
No 267
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.94 E-value=1.2e+03 Score=25.92 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=43.4
Q ss_pred ccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCCCCCCcccEEEEECCCCCceEEEccc
Q 001901 201 EDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEP 273 (998)
Q Consensus 201 ~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~ 273 (998)
..+...|..+....|..+- ..|...+++++++ .+|+|-+.+ .+|.++.++...-|..+..
T Consensus 33 ~~~~avd~~sG~~~We~il------g~RiE~sa~vvgd--fVV~GCy~g-----~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAIL------GVRIECSAIVVGD--FVVLGCYSG-----GLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEecCCCCcEEeehhh------CceeeeeeEEECC--EEEEEEccC-----cEEEEEecchhheeeeeeh
Confidence 4566788888777898764 5788888888988 477776654 4677777776557776644
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=20.62 E-value=1.3e+03 Score=26.52 Aligned_cols=72 Identities=8% Similarity=-0.054 Sum_probs=42.6
Q ss_pred CEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCcEEEEEcCCC----CCCCcccEEEEE
Q 001901 185 TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGND----GKRPLADVWALD 260 (998)
Q Consensus 185 ~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~Lyv~GG~~----g~~~lndv~~yD 260 (998)
..+||.-..... ..+.++++|..+. ..+. ..+.+...|.+..-+++.||+.-.+. -....+.+.+||
T Consensus 13 ~~v~V~d~~~~~--~~~~v~ViD~~~~----~v~g---~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 13 RRVYVLDPGHFA--ATTQVYTIDGEAG----RVLG---MTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred CEEEEECCcccc--cCceEEEEECCCC----EEEE---EEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 356776543111 2378999999874 3332 33444444444344455899887631 122357899999
Q ss_pred CCCCC
Q 001901 261 TAAKP 265 (998)
Q Consensus 261 ~~s~~ 265 (998)
+.+..
T Consensus 84 ~~t~~ 88 (352)
T TIGR02658 84 PQTHL 88 (352)
T ss_pred CccCc
Confidence 99884
No 269
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=20.43 E-value=5.7e+02 Score=31.10 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=55.3
Q ss_pred cccCCcEEEEECCCCcEEEecCCCCCCCCccceEEEEeC--CEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCC
Q 001901 146 AGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG--TMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGP 223 (998)
Q Consensus 146 ~~~~~dv~~yD~~t~~W~~l~~~g~~P~pR~~hsa~~~~--~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~ 223 (998)
++.-.++|+||++.++|-..-... .+ .--++.++ +-++.+||.. ..+..||+.+.+ .-..+.....
T Consensus 151 ~gsg~evYRlNLEqGrfL~P~~~~---~~--~lN~v~in~~hgLla~Gt~~------g~VEfwDpR~ks-rv~~l~~~~~ 218 (703)
T KOG2321|consen 151 VGSGSEVYRLNLEQGRFLNPFETD---SG--ELNVVSINEEHGLLACGTED------GVVEFWDPRDKS-RVGTLDAASS 218 (703)
T ss_pred eecCcceEEEEccccccccccccc---cc--cceeeeecCccceEEecccC------ceEEEecchhhh-hheeeecccc
Confidence 345679999999999996443221 11 22233333 4788888853 457788877643 2222222111
Q ss_pred ---CCCCCc--ccEEEEECC-cEEEEEcCCCCCCCcccEEEEECCCC
Q 001901 224 ---GPGPRY--GHVMALVGQ-RYLMAIGGNDGKRPLADVWALDTAAK 264 (998)
Q Consensus 224 ---~P~~R~--~hs~~~~~~-~~Lyv~GG~~g~~~lndv~~yD~~s~ 264 (998)
.|..-. .-++..+.+ +-=+.+|-.+| .++.||+.+.
T Consensus 219 v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-----~v~iyDLRa~ 260 (703)
T KOG2321|consen 219 VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-----SVLIYDLRAS 260 (703)
T ss_pred cCCCccccccCcceEEEecCCceeEEeeccCC-----cEEEEEcccC
Confidence 222222 234444544 33334444333 6889999877
No 270
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=20.13 E-value=1.3e+03 Score=26.07 Aligned_cols=156 Identities=17% Similarity=0.235 Sum_probs=61.4
Q ss_pred CcEEEecCCCCCCCCccceEEEEeCCEEEEEeCCCCCCCCcccEEEEEcCCCCCceEEeeecCCCCCCCcccEEEEECCc
Q 001901 160 NKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQR 239 (998)
Q Consensus 160 ~~W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~~~dv~~~Dl~t~t~~W~~l~~~g~~P~~R~~hs~~~~~~~ 239 (998)
.+|+.+....+.+.....+++...++..||.|-. .+.....+.. ..|+++.....+|. ..+.+..++++
T Consensus 47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~--------g~ll~T~DgG-~tW~~v~l~~~lpg--s~~~i~~l~~~ 115 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP--------GLLLHTTDGG-KTWERVPLSSKLPG--SPFGITALGDG 115 (302)
T ss_dssp SS-EE-----S-----EEEEEEEETTEEEEEEET--------TEEEEESSTT-SS-EE----TT-SS---EEEEEEEETT
T ss_pred ccccccccCCCccceeeEEEEEecCCceEEEcCC--------ceEEEecCCC-CCcEEeecCCCCCC--CeeEEEEcCCC
Confidence 5798876442112122334455557788888742 1222333322 25999864433443 33445556665
Q ss_pred EEEEEcCCCCCCCcccEEEEECCCCCceEEEcccCCCCCCCccceEEEEEeCCEEEEEeccCCCCCCcccEEEE-ecCCC
Q 001901 240 YLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGL-AKHRD 318 (998)
Q Consensus 240 ~Lyv~GG~~g~~~lndv~~yD~~s~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~lyvfGG~~~~~~~~~dv~~~-~~~~~ 318 (998)
.++++|.. ..+++=.-.-. +|+.+..... ..........++++++++... .+|.- ++...
T Consensus 116 ~~~l~~~~------G~iy~T~DgG~--tW~~~~~~~~----gs~~~~~r~~dG~~vavs~~G-------~~~~s~~~G~~ 176 (302)
T PF14870_consen 116 SAELAGDR------GAIYRTTDGGK--TWQAVVSETS----GSINDITRSSDGRYVAVSSRG-------NFYSSWDPGQT 176 (302)
T ss_dssp EEEEEETT--------EEEESSTTS--SEEEEE-S--------EEEEEE-TTS-EEEEETTS-------SEEEEE-TT-S
T ss_pred cEEEEcCC------CcEEEeCCCCC--CeeEcccCCc----ceeEeEEECCCCcEEEEECcc-------cEEEEecCCCc
Confidence 77777643 23444333334 8998754322 122223334577777776432 22222 22222
Q ss_pred CeEEEEECCCCCCCCcceeEEEEE-CCEEEEEc
Q 001901 319 GRWEWAIAPGVSPSPRYQHAAVFV-NARLHVSG 350 (998)
Q Consensus 319 ~~W~w~~~~g~~P~pR~~hsav~~-~~~L~V~G 350 (998)
.|.-.... ..|.-.++.+. ++.|+++.
T Consensus 177 -~w~~~~r~----~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 177 -TWQPHNRN----SSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp -S-EEEE------SSS-EEEEEE-TTS-EEEEE
T ss_pred -cceEEccC----ccceehhceecCCCCEEEEe
Confidence 45544433 33444444444 56777654
Done!