Query         001902
Match_columns 998
No_of_seqs    676 out of 4588
Neff          8.1 
Searched_HMMs 13730
Date          Mon Mar 25 03:54:41 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001902.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001902hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1uu3a_ d.144.1.7 (A:) 3-phosp 100.0 2.5E-55 1.8E-59  481.3  27.2  279  664-971     7-287 (288)
  2 d1o6la_ d.144.1.7 (A:) Pkb kin 100.0 1.5E-53 1.1E-57  477.1  29.3  278  662-970     2-282 (337)
  3 d2j4za1 d.144.1.7 (A:126-388)  100.0 9.4E-54 6.8E-58  462.7  25.0  257  663-956     4-260 (263)
  4 d1fota_ d.144.1.7 (A:) cAMP-de 100.0   9E-53 6.5E-57  467.4  28.3  273  664-970     3-278 (316)
  5 d1rdqe_ d.144.1.7 (E:) cAMP-de 100.0 1.9E-52 1.4E-56  471.1  27.9  273  664-970    40-315 (350)
  6 d1yhwa1 d.144.1.7 (A:249-541)  100.0 3.5E-52 2.5E-56  457.1  28.0  255  665-956    20-275 (293)
  7 d1nvra_ d.144.1.7 (A:) Cell cy 100.0 1.1E-52 8.2E-57  456.0  23.2  260  664-956     4-265 (271)
  8 d1xjda_ d.144.1.7 (A:) Protein 100.0   1E-51 7.5E-56  459.6  25.9  271  664-969     1-275 (320)
  9 d1u5ra_ d.144.1.7 (A:) Serine/ 100.0 1.3E-51 9.2E-56  456.3  26.4  254  666-956    16-272 (309)
 10 d1jksa_ d.144.1.7 (A:) Death-a 100.0 1.9E-51 1.4E-55  452.7  27.7  264  665-962    10-282 (293)
 11 d1s9ja_ d.144.1.7 (A:) Dual sp 100.0 4.2E-52   3E-56  464.0  21.1  262  662-960     3-307 (322)
 12 d1a06a_ d.144.1.7 (A:) Calmodu 100.0 2.4E-51 1.7E-55  453.9  26.9  256  665-956     9-269 (307)
 13 d2jfla1 d.144.1.7 (A:21-308) S 100.0 1.1E-51 7.9E-56  452.5  23.5  258  665-957    12-275 (288)
 14 d1omwa3 d.144.1.7 (A:186-549)  100.0 3.4E-51 2.5E-55  463.4  27.5  275  663-970     2-286 (364)
 15 d1koaa2 d.144.1.7 (A:5915-6264 100.0   5E-51 3.6E-55  459.2  27.9  262  664-961    25-290 (350)
 16 d2java1 d.144.1.7 (A:3-271) Se 100.0 2.2E-51 1.6E-55  445.8  22.8  257  665-954     4-269 (269)
 17 d1koba_ d.144.1.7 (A:) Twitchi 100.0 1.2E-50 9.1E-55  456.3  27.5  258  664-957    28-289 (352)
 18 d1t4ha_ d.144.1.7 (A:) Protein 100.0 1.9E-50 1.4E-54  438.4  27.1  252  667-955    11-270 (270)
 19 d1phka_ d.144.1.7 (A:) gamma-s 100.0   2E-49 1.4E-53  432.0  28.7  260  664-957     2-276 (277)
 20 d1tkia_ d.144.1.7 (A:) Titin,  100.0 2.8E-49   2E-53  440.3  24.0  256  664-956     4-263 (321)
 21 d1ua2a_ d.144.1.7 (A:) Cell di 100.0   1E-48 7.6E-53  432.3  23.0  256  669-957     2-286 (299)
 22 d1gz8a_ d.144.1.7 (A:) Cyclin- 100.0 2.7E-48 1.9E-52  428.7  25.6  261  664-957     1-289 (298)
 23 d1opja_ d.144.1.7 (A:) Abelson 100.0 3.9E-48 2.9E-52  424.3  24.9  257  660-950    12-268 (287)
 24 d2ozaa1 d.144.1.7 (A:51-385) M 100.0 1.3E-48 9.8E-53  437.1  21.3  253  664-956    10-277 (335)
 25 d1xwsa_ d.144.1.7 (A:) Proto-o 100.0 9.9E-48 7.2E-52  418.4  20.6  252  665-959     4-263 (273)
 26 d1uwha_ d.144.1.7 (A:) B-Raf k 100.0 3.3E-47 2.4E-51  414.3  24.2  257  660-951     3-266 (276)
 27 d1blxa_ d.144.1.7 (A:) Cyclin- 100.0 4.1E-47   3E-51  420.7  25.1  262  664-959     6-301 (305)
 28 d1o6ya_ d.144.1.7 (A:) Mycobac 100.0 2.7E-47 1.9E-51  416.1  22.9  251  664-940     6-262 (277)
 29 d1qpca_ d.144.1.7 (A:) Lymphoc 100.0 1.6E-47 1.2E-51  416.4  20.7  263  657-956     5-270 (272)
 30 d1rjba_ d.144.1.7 (A:) Fl cyto 100.0   3E-47 2.2E-51  425.2  22.8  261  660-951    32-320 (325)
 31 d1vzoa_ d.144.1.7 (A:) Ribosom 100.0 3.3E-47 2.4E-51  423.7  21.1  285  662-976    21-317 (322)
 32 d1cm8a_ d.144.1.7 (A:) MAP kin 100.0 1.5E-46 1.1E-50  423.7  26.0  258  664-960    17-310 (346)
 33 d1u59a_ d.144.1.7 (A:) Tyrosin 100.0 1.4E-46   1E-50  411.1  24.8  263  663-955     6-272 (285)
 34 d1sm2a_ d.144.1.7 (A:) Tyrosin 100.0 1.7E-46 1.2E-50  406.3  25.1  253  662-951     2-255 (263)
 35 d1jpaa_ d.144.1.7 (A:) ephb2 r 100.0 1.7E-46 1.3E-50  413.6  25.0  258  661-944    22-283 (299)
 36 d1k2pa_ d.144.1.7 (A:) Bruton' 100.0 4.2E-46 3.1E-50  401.5  26.9  252  663-951     2-254 (258)
 37 d1ob3a_ d.144.1.7 (A:) Cyclin- 100.0 2.2E-46 1.6E-50  411.0  22.6  258  664-956     1-286 (286)
 38 d1xbba_ d.144.1.7 (A:) Tyrosin 100.0 3.2E-46 2.3E-50  406.9  22.4  256  671-956    13-271 (277)
 39 d1fmka3 d.144.1.7 (A:249-533)  100.0 6.9E-46 5.1E-50  405.3  22.3  261  660-957    12-275 (285)
 40 d3bqca1 d.144.1.7 (A:3-330) Pr 100.0   2E-45 1.4E-49  411.4  25.7  254  664-960    34-328 (328)
 41 d1mqba_ d.144.1.7 (A:) epha2 r 100.0 5.5E-45   4E-49  398.8  27.4  256  661-944     3-263 (283)
 42 d1pmea_ d.144.1.7 (A:) MAP kin 100.0 3.8E-45 2.7E-49  411.8  26.8  259  665-957     8-301 (345)
 43 d3blha1 d.144.1.7 (A:8-325) Ce 100.0 2.3E-45 1.7E-49  409.0  24.8  263  664-956     9-310 (318)
 44 d1q5ka_ d.144.1.7 (A:) Glycoge 100.0 3.9E-45 2.9E-49  412.5  26.2  255  666-959    21-311 (350)
 45 d1mp8a_ d.144.1.7 (A:) Focal a 100.0 2.8E-45   2E-49  399.1  24.1  256  661-951     3-262 (273)
 46 d2b1pa1 d.144.1.7 (A:46-400) c 100.0 2.3E-45 1.7E-49  415.2  24.2  263  664-964    16-324 (355)
 47 d1unla_ d.144.1.7 (A:) Cyclin- 100.0 9.3E-45 6.8E-49  398.9  28.2  260  664-957     1-289 (292)
 48 d1u46a_ d.144.1.7 (A:) Activat 100.0 2.8E-45   2E-49  398.6  22.8  256  662-943     5-264 (273)
 49 d2gfsa1 d.144.1.7 (A:5-352) MA 100.0 4.3E-45 3.1E-49  412.1  23.3  256  664-957    17-307 (348)
 50 d1byga_ d.144.1.7 (A:) Carboxy 100.0 2.1E-45 1.5E-49  396.7  19.0  250  659-950     1-252 (262)
 51 d1ywna1 d.144.1.7 (A:818-1166) 100.0 1.3E-44 9.2E-49  399.4  23.1  260  661-951     9-290 (299)
 52 d1xkka_ d.144.1.7 (A:) EGF rec 100.0 2.6E-44 1.9E-48  399.9  24.7  254  664-951     8-266 (317)
 53 d1fgka_ d.144.1.7 (A:) Fibrobl 100.0 1.7E-43 1.2E-47  390.0  26.7  260  659-950     7-289 (299)
 54 d1lufa_ d.144.1.7 (A:) Musk ty 100.0 1.5E-43 1.1E-47  391.0  24.9  255  662-944    10-292 (301)
 55 d1fvra_ d.144.1.7 (A:) Tie2 ki 100.0 7.5E-44 5.5E-48  394.7  22.6  255  662-951     7-279 (309)
 56 d1p4oa_ d.144.1.7 (A:) Insulin 100.0 1.2E-43 8.9E-48  392.7  23.4  271  659-957    14-300 (308)
 57 d1t46a_ d.144.1.7 (A:) c-KIT r 100.0 2.9E-43 2.1E-47  390.3  24.6  260  660-950    18-300 (311)
 58 d1ckia_ d.144.1.7 (A:) Casein  100.0 3.8E-42 2.7E-46  379.5  22.1  263  665-955     7-279 (299)
 59 d1r0pa_ d.144.1.7 (A:) Hepatoc 100.0 1.2E-41   9E-46  376.6  25.5  251  670-951    32-287 (311)
 60 d1csna_ d.144.1.7 (A:) Casein  100.0   1E-40 7.5E-45  366.5  24.1  252  664-942     4-267 (293)
 61 d1vjya_ d.144.1.7 (A:) Type I  100.0   4E-40 2.9E-44  363.4  21.4  245  665-943     3-287 (303)
 62 d1q8ya_ d.144.1.7 (A:) Sky1p { 100.0 1.6E-39 1.2E-43  368.2  21.3  263  658-958     6-335 (362)
 63 d1zara2 d.144.1.9 (A:91-281) R  99.9   3E-22 2.2E-26  204.2  11.9  136  667-817     2-152 (191)
 64 d1n9la_ d.110.3.6 (A:) Putativ  99.8 4.1E-19   3E-23  163.3  15.8  108  198-305     2-109 (109)
 65 d1n9la_ d.110.3.6 (A:) Putativ  99.7 6.7E-18 4.9E-22  155.0  15.0  104  481-584     2-109 (109)
 66 d1bywa_ d.110.3.6 (A:) Erg pot  99.7 2.3E-17 1.7E-21  151.5  15.4  106  201-306     3-110 (110)
 67 d1jnua_ d.110.3.6 (A:) Photore  99.7 3.3E-17 2.4E-21  148.7  14.0  103  201-303     2-104 (104)
 68 d1ew0a_ d.110.3.2 (A:) Histidi  99.7 3.6E-17 2.6E-21  154.6   9.7  125  175-304     2-130 (130)
 69 d1ew0a_ d.110.3.2 (A:) Histidi  99.7 1.5E-16 1.1E-20  150.3  13.5  108  473-583    17-130 (130)
 70 d1bywa_ d.110.3.6 (A:) Erg pot  99.7   2E-16 1.5E-20  145.0  13.9  103  483-585     2-110 (110)
 71 d1jnua_ d.110.3.6 (A:) Photore  99.6 1.2E-15 8.6E-20  138.3  14.7   99  484-582     2-104 (104)
 72 d1xj3a1 d.110.3.2 (A:154-259)   99.6 1.4E-15   1E-19  137.5   9.4  100  483-585     1-106 (106)
 73 d1v9ya_ d.110.3.2 (A:) Direct   99.6 4.9E-15 3.5E-19  135.6  12.0  105  474-581     3-113 (113)
 74 d1p97a_ d.110.3.7 (A:) Hypoxia  99.5 3.5E-15 2.5E-19  137.5   8.5  106  200-308     5-113 (114)
 75 d1p97a_ d.110.3.7 (A:) Hypoxia  99.5 8.6E-15 6.3E-19  134.8   8.7  102  483-587     7-113 (114)
 76 d1xj3a1 d.110.3.2 (A:154-259)   99.5 4.2E-14   3E-18  127.5  11.7  102  200-306     1-106 (106)
 77 d1v9ya_ d.110.3.2 (A:) Direct   99.5 3.5E-14 2.5E-18  129.8  11.1  108  190-302     2-113 (113)
 78 d1nwza_ d.110.3.1 (A:) Photoac  99.4 9.4E-13 6.9E-17  123.2  12.1  106  474-582    19-125 (125)
 79 d1mzua_ d.110.3.1 (A:) PYP dom  99.4 8.7E-13 6.4E-17  120.4  10.9  101  474-577     5-107 (110)
 80 d1ll8a_ d.110.3.5 (A:) N-termi  99.3 3.1E-13 2.3E-17  124.2   4.3  102  479-583     5-113 (114)
 81 d1nwza_ d.110.3.1 (A:) Photoac  99.3   5E-12 3.7E-16  118.1  10.6  108  189-303    17-125 (125)
 82 d1mzua_ d.110.3.1 (A:) PYP dom  99.3   1E-11 7.4E-16  113.2  11.2   96  190-288     4-100 (110)
 83 d1ll8a_ d.110.3.5 (A:) N-termi  99.2 5.1E-12 3.7E-16  115.9   4.1  105  196-304     5-113 (114)
 84 d1oj5a_ d.110.3.8 (A:) PAS dom  98.9 8.6E-10 6.3E-14   99.8   5.5   91  485-578     5-103 (109)
 85 d1oj5a_ d.110.3.8 (A:) PAS dom  98.8 9.6E-10   7E-14   99.5   4.7   89  211-299    11-103 (109)
 86 d1j7la_ d.144.1.6 (A:) Type II  98.4 1.1E-06 7.8E-11   91.7  14.0  139  665-815    14-212 (263)
 87 d1nd4a_ d.144.1.6 (A:) Aminogl  97.9 1.7E-05 1.2E-09   81.8  11.3   75  672-753    17-94  (255)
 88 d2pula1 d.144.1.6 (A:5-396) Me  97.8 1.9E-05 1.4E-09   87.3  10.2   81  670-752    31-118 (392)
 89 d1nw1a_ d.144.1.8 (A:) Choline  96.9   0.001 7.6E-08   72.9  10.5   74  670-752    47-128 (395)
 90 d1zyla1 d.144.1.6 (A:4-328) Rd  96.5  0.0031 2.2E-07   67.1   9.5   70  678-752    35-111 (325)
 91 d2oola2 d.110.3.9 (A:26-139) S  96.3  0.0012 8.5E-08   58.8   3.7   76  483-565    18-98  (114)
 92 d2ppqa1 d.144.1.6 (A:5-320) Ho  96.2  0.0057 4.2E-07   64.4   9.7  146  664-816    17-213 (316)
 93 d2oola2 d.110.3.9 (A:26-139) S  95.9  0.0023 1.6E-07   56.8   3.9   54  201-260    19-72  (114)
 94 d2o9ca2 d.110.3.9 (A:4-130) Ba  89.6    0.24 1.8E-05   44.0   6.2   78  483-567    36-115 (127)
 95 d2veaa3 d.110.3.9 (A:4-130) Ph  89.5   0.081 5.9E-06   47.3   2.8   47  483-531    27-73  (127)
 96 d2o9ca2 d.110.3.9 (A:4-130) Ba  88.2    0.35 2.5E-05   42.9   6.3   75  201-282    37-113 (127)
 97 d2veaa3 d.110.3.9 (A:4-130) Ph  87.9    0.16 1.1E-05   45.3   3.6   42  202-245    29-70  (127)
 98 d1p0za_ d.110.6.1 (A:) Sensor   67.6      32  0.0023   29.3  12.6   89  188-305    38-127 (131)
 99 d1cjaa_ d.144.1.3 (A:) Actin-f  63.5     3.9 0.00029   41.1   5.7  140  662-814    66-235 (342)
100 d3c2wa3 d.110.3.9 (A:5-117) Ba  52.6     7.3 0.00053   33.0   4.9   75  483-566    23-97  (113)
101 d3c2wa3 d.110.3.9 (A:5-117) Ba  51.7     7.8 0.00057   32.8   4.9   73  201-282    24-96  (113)
102 d1ydua1 b.162.1.1 (A:2-170) Hy  42.3     5.5  0.0004   36.1   2.4   49   52-100    10-60  (169)
103 d1e7ua4 d.144.1.4 (A:726-1094)  24.1      43  0.0031   34.2   6.1   25  791-815   220-244 (369)

No 1  
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.5e-55  Score=481.33  Aligned_cols=279  Identities=36%  Similarity=0.640  Sum_probs=247.1

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLI  743 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV  743 (998)
                      .++|++++.||+|+||+||+|.++.+|+.||||++.+....+......+.+|+.+|++++||||++++++|.+++.+|||
T Consensus         7 p~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~iv   86 (288)
T d1uu3a_           7 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG   86 (288)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEE
T ss_pred             CCCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEE
Confidence            46799999999999999999999999999999999876554555667889999999999999999999999999999999


Q ss_pred             EecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCC
Q 001902          744 TDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQL  823 (998)
Q Consensus       744 ~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~  823 (998)
                      ||||+||+|.+++...  +.+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+....... 
T Consensus        87 mEy~~gg~L~~~~~~~--~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~-  163 (288)
T d1uu3a_          87 LSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK-  163 (288)
T ss_dssp             ECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             EEccCCCCHHHhhhcc--CCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCc-
Confidence            9999999999998765  4599999999999999999999999999999999999999999999999999976431111 


Q ss_pred             CCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChHHHH
Q 001902          824 LLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTF  903 (998)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~~~  903 (998)
                                              .......+||+.|||||++.+..++.++|||||||++|+|++|..||.+.+....+
T Consensus       164 ------------------------~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~  219 (288)
T d1uu3a_         164 ------------------------QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIF  219 (288)
T ss_dssp             ------------------------------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH
T ss_pred             ------------------------ccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHH
Confidence                                    11234567999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhc--HHHHHcCCCccCCChhhhhcCCCCCCC
Q 001902          904 ANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEG--ANEIKKHPFFKGVNWALVRCMNPPELD  971 (998)
Q Consensus       904 ~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~--a~elL~Hp~f~~~~~~~~~~~~~~~~~  971 (998)
                      .++.+..+.+|.  .++.++++||.+||+.||.+|||+.++  ...+++||||++++|..+....||.++
T Consensus       220 ~~i~~~~~~~p~--~~s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i~w~~l~~~~pP~l~  287 (288)
T d1uu3a_         220 QKIIKLEYDFPE--KFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT  287 (288)
T ss_dssp             HHHHTTCCCCCT--TCCHHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCTTGGGSCCCCCC
T ss_pred             HHHHcCCCCCCc--cCCHHHHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCCCCHHHhhcCCCCCCC
Confidence            999988877764  478999999999999999999996653  446899999999999999999999763


No 2  
>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.5e-53  Score=477.09  Aligned_cols=278  Identities=40%  Similarity=0.767  Sum_probs=248.6

Q ss_pred             cccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEE
Q 001902          662 INLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVC  741 (998)
Q Consensus       662 ~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~  741 (998)
                      +.+++|++++.||+|+||.||+|+++.+|+.||+|++++...........+.+|+.+|++++||||++++++|.+.+.+|
T Consensus         2 i~l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~   81 (337)
T d1o6la_           2 VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             CchHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccc
Confidence            45678999999999999999999999999999999998776555566788899999999999999999999999999999


Q ss_pred             EEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCC
Q 001902          742 LITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKP  821 (998)
Q Consensus       742 lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~  821 (998)
                      +|||||+||+|.+++.+.  ..+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+..... 
T Consensus        82 iv~ey~~gg~L~~~~~~~--~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~-  158 (337)
T d1o6la_          82 FVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD-  158 (337)
T ss_dssp             EEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT-
T ss_pred             cceeccCCCchhhhhhcc--cCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccC-
Confidence            999999999999999875  45999999999999999999999999999999999999999999999999999653211 


Q ss_pred             CCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChHH
Q 001902          822 QLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQK  901 (998)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~  901 (998)
                                                .......+||+.|||||++.+..|+.++|||||||++|+|++|++||.+.+...
T Consensus       159 --------------------------~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~  212 (337)
T d1o6la_         159 --------------------------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER  212 (337)
T ss_dssp             --------------------------TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             --------------------------CcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHH
Confidence                                      112345689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChh-cHHHHHcCCCccCCChhhh--hcCCCCCC
Q 001902          902 TFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHE-GANEIKKHPFFKGVNWALV--RCMNPPEL  970 (998)
Q Consensus       902 ~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~-~a~elL~Hp~f~~~~~~~~--~~~~~~~~  970 (998)
                      .+..+....+.+|.  .+|.++++||.+||++||.+|++... .+.++++||||++++|..+  +.+.||..
T Consensus       213 ~~~~i~~~~~~~p~--~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~i~~~~l~~~~~~~p~~  282 (337)
T d1o6la_         213 LFELILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFK  282 (337)
T ss_dssp             HHHHHHHCCCCCCT--TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCC
T ss_pred             HHHHHhcCCCCCCc--cCCHHHHHHHHhhccCCchhhcccccccHHHHHcCcccccCCHHHHHhCCCCCCCC
Confidence            99999998887775  47899999999999999999996543 3899999999999999887  44555544


No 3  
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=9.4e-54  Score=462.69  Aligned_cols=257  Identities=34%  Similarity=0.569  Sum_probs=233.3

Q ss_pred             ccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEE
Q 001902          663 NLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCL  742 (998)
Q Consensus       663 ~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~l  742 (998)
                      .+++|++++.||+|+||.||+|.++.+|+.||+|++.+....+......+.+|+.+++.++||||+++++++.+++.+||
T Consensus         4 ~l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i   83 (263)
T d2j4za1           4 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   83 (263)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             chhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEE
Confidence            35689999999999999999999999999999999987655555556788899999999999999999999999999999


Q ss_pred             EEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCC
Q 001902          743 ITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQ  822 (998)
Q Consensus       743 V~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~  822 (998)
                      |||||++|+|.+++.+.  ..+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|.....   
T Consensus        84 vmEy~~~g~L~~~l~~~--~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~---  158 (263)
T d2j4za1          84 ILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS---  158 (263)
T ss_dssp             EEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCC---
T ss_pred             EEeecCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCC---
Confidence            99999999999999874  4599999999999999999999999999999999999999999999999999954321   


Q ss_pred             CCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChHHH
Q 001902          823 LLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKT  902 (998)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~~  902 (998)
                                                ......+||+.|||||++.+..++.++|||||||++|+|++|+.||.+.+....
T Consensus       159 --------------------------~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~  212 (263)
T d2j4za1         159 --------------------------SRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET  212 (263)
T ss_dssp             --------------------------CCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH
T ss_pred             --------------------------CcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHH
Confidence                                      112345799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccC
Q 001902          903 FANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKG  956 (998)
Q Consensus       903 ~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~  956 (998)
                      +..+.+....+|.  .+|.++++||.+||+.||.+|||    +.++|+||||++
T Consensus       213 ~~~i~~~~~~~p~--~~s~~~~~li~~~L~~dp~~R~t----~~eil~hp~~~~  260 (263)
T d2j4za1         213 YKRISRVEFTFPD--FVTEGARDLISRLLKHNPSQRPM----LREVLEHPWITA  260 (263)
T ss_dssp             HHHHHTTCCCCCT--TSCHHHHHHHHHHTCSSGGGSCC----HHHHHTCHHHHH
T ss_pred             HHHHHcCCCCCCc--cCCHHHHHHHHHHccCCHhHCcC----HHHHHcCcCcCC
Confidence            9999888777665  46899999999999999999999    999999999974


No 4  
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=9e-53  Score=467.35  Aligned_cols=273  Identities=41%  Similarity=0.809  Sum_probs=243.6

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLI  743 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV  743 (998)
                      +++|++++.||+|+||+||+|+++.+|+.||||++++.........+.+.+|+.+++.++||||+++++++.+.+.+|+|
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   82 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   82 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeE
Confidence            46899999999999999999999999999999999876555555677889999999999999999999999999999999


Q ss_pred             EecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCC
Q 001902          744 TDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQL  823 (998)
Q Consensus       744 ~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~  823 (998)
                      ||||+||+|..++...  ..+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+....    
T Consensus        83 mE~~~gg~l~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~----  156 (316)
T d1fota_          83 MDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD----  156 (316)
T ss_dssp             ECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSS----
T ss_pred             eeecCCcccccccccc--ccccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEecc----
Confidence            9999999999999875  4589999999999999999999999999999999999999999999999999965321    


Q ss_pred             CCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChHHHH
Q 001902          824 LLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTF  903 (998)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~~~  903 (998)
                                                .....+||+.|||||++.+..|+.++|||||||++|+|++|+.||.+.+....+
T Consensus       157 --------------------------~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~  210 (316)
T d1fota_         157 --------------------------VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTY  210 (316)
T ss_dssp             --------------------------CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHH
T ss_pred             --------------------------ccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHH
Confidence                                      123468999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCCh-hcHHHHHcCCCccCCChhhh--hcCCCCCC
Q 001902          904 ANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSH-EGANEIKKHPFFKGVNWALV--RCMNPPEL  970 (998)
Q Consensus       904 ~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~-~~a~elL~Hp~f~~~~~~~~--~~~~~~~~  970 (998)
                      ..+......+|.  .++.++.++|.+||..||.+|++.. +.++++|+||||++++|..+  +.+.||..
T Consensus       211 ~~i~~~~~~~p~--~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~i~~~~l~~~~~~~p~~  278 (316)
T d1fota_         211 EKILNAELRFPP--FFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYE  278 (316)
T ss_dssp             HHHHHCCCCCCT--TSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCCHHHHHTTCSCCSCC
T ss_pred             HHHHcCCCCCCC--CCCHHHHHHHHHHhhhCHHhccccchhhHHHHHcCcccccCCHHHHHhCCCCcCCC
Confidence            999998776664  4688999999999999999997332 24999999999999999977  45555543


No 5  
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=1.9e-52  Score=471.08  Aligned_cols=273  Identities=37%  Similarity=0.685  Sum_probs=243.8

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLI  743 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV  743 (998)
                      +++|++++.||+|+||.||+|+++.+|+.||||++.+....+......+.+|+.+|+.++||||+++++++.....+++|
T Consensus        40 ld~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccc
Confidence            56899999999999999999999999999999999876555555667889999999999999999999999999999999


Q ss_pred             EecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCC
Q 001902          744 TDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQL  823 (998)
Q Consensus       744 ~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~  823 (998)
                      |||+.||+|..++.+.  +.+++..++.++.||+.||.|||++|||||||||+|||++.+|.+||+|||+|+....    
T Consensus       120 ~e~~~~g~l~~~l~~~--~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~----  193 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG----  193 (350)
T ss_dssp             EECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS----
T ss_pred             cccccccchhhhHhhc--CCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeeccc----
Confidence            9999999999999775  3599999999999999999999999999999999999999999999999999965421    


Q ss_pred             CCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChHHHH
Q 001902          824 LLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTF  903 (998)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~~~  903 (998)
                                                .....+||+.|||||++.+..++.++|||||||++|+|++|++||.+.+....+
T Consensus       194 --------------------------~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~  247 (350)
T d1rdqe_         194 --------------------------RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY  247 (350)
T ss_dssp             --------------------------CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH
T ss_pred             --------------------------ccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHH
Confidence                                      123457999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcC-CChhcHHHHHcCCCccCCChhhhh--cCCCCCC
Q 001902          904 ANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRL-GSHEGANEIKKHPFFKGVNWALVR--CMNPPEL  970 (998)
Q Consensus       904 ~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rp-t~~~~a~elL~Hp~f~~~~~~~~~--~~~~~~~  970 (998)
                      ..+....+.+|.  .++.++.+||.+||..||.+|+ +.++.+++|++||||++++|..+.  .+.||..
T Consensus       248 ~~i~~~~~~~p~--~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~~~~~~~~~~~~~~p~~  315 (350)
T d1rdqe_         248 EKIVSGKVRFPS--HFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFI  315 (350)
T ss_dssp             HHHHHCCCCCCT--TCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHHHTTCSCCSCC
T ss_pred             HHHhcCCCCCCc--cCCHHHHHHHHHHhhhCHHhccccccccHHHHHcCccccCCCHHHHHhcCCCcCcc
Confidence            999988776654  5789999999999999999995 333449999999999999998773  4555544


No 6  
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.5e-52  Score=457.05  Aligned_cols=255  Identities=25%  Similarity=0.410  Sum_probs=226.7

Q ss_pred             CCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEEE
Q 001902          665 QHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLIT  744 (998)
Q Consensus       665 ~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV~  744 (998)
                      ++|++++.||+|+||.||+|.+..+|+.||+|++......   ..+.+.+|+.+|++++||||++++++|.+.+.+||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~---~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   96 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP---KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCS---CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccCh---HHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEE
Confidence            5799999999999999999999999999999999865332   3467889999999999999999999999999999999


Q ss_pred             ecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCCC
Q 001902          745 DYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQLL  824 (998)
Q Consensus       745 E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~~  824 (998)
                      |||+||+|.+++.+.   .+++..++.++.||+.||.|||++|||||||||+|||++.+|.+||+|||+|+.....    
T Consensus        97 Ey~~gg~L~~~~~~~---~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~----  169 (293)
T d1yhwa1          97 EYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE----  169 (293)
T ss_dssp             ECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCST----
T ss_pred             EecCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccc----
Confidence            999999999988763   4999999999999999999999999999999999999999999999999999654311    


Q ss_pred             CCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChHHHHH
Q 001902          825 LPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFA  904 (998)
Q Consensus       825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~~~~  904 (998)
                                             .......+||+.|||||++.+..++.++|||||||++|+|++|.+||.+.+....+.
T Consensus       170 -----------------------~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~  226 (293)
T d1yhwa1         170 -----------------------QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY  226 (293)
T ss_dssp             -----------------------TCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH
T ss_pred             -----------------------cccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHH
Confidence                                   112235579999999999999999999999999999999999999999988887777


Q ss_pred             HHHhCC-CCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccC
Q 001902          905 NILHKD-LKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKG  956 (998)
Q Consensus       905 ~i~~~~-~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~  956 (998)
                      .+.... ..++....+|.++++||.+||..||.+|||    +.++|+||||+.
T Consensus       227 ~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s----~~eil~Hp~~~~  275 (293)
T d1yhwa1         227 LIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGS----AKELLQHQFLKI  275 (293)
T ss_dssp             HHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCC----HHHHTTCGGGGG
T ss_pred             HHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHCcC----HHHHhcCHhhCC
Confidence            776543 334444567899999999999999999999    999999999975


No 7  
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.1e-52  Score=456.01  Aligned_cols=260  Identities=26%  Similarity=0.425  Sum_probs=220.5

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLI  743 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV  743 (998)
                      .++|++++.||+|+||+||+|.++.+|+.||+|++.....  ....+.+.+|+.+|++++||||+++++++.+.+.+|||
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~iv   81 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA--VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   81 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhc--chHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEE
Confidence            4689999999999999999999999999999999976432  22345688999999999999999999999999999999


Q ss_pred             EecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCC
Q 001902          744 TDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQL  823 (998)
Q Consensus       744 ~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~  823 (998)
                      ||||+||+|.+++...  ..+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+......  
T Consensus        82 mEy~~gg~L~~~l~~~--~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~--  157 (271)
T d1nvra_          82 LEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNN--  157 (271)
T ss_dssp             EECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETT--
T ss_pred             EeccCCCcHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCC--
Confidence            9999999999999764  469999999999999999999999999999999999999999999999999996543111  


Q ss_pred             CCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCC-CChhHHHHHHHHHHHHHcCCCCCCCCChH-H
Q 001902          824 LLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGH-TSAVDWWALGILLYEMLYGYTPFRGKTRQ-K  901 (998)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~-~~~sDIwSlG~il~eLltG~~Pf~~~~~~-~  901 (998)
                                             ........+||+.|||||++.+..+ +.++|||||||++|+|++|++||.+.... .
T Consensus       158 -----------------------~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~  214 (271)
T d1nvra_         158 -----------------------RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ  214 (271)
T ss_dssp             -----------------------EECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSH
T ss_pred             -----------------------ccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHH
Confidence                                   0112345689999999999988776 56899999999999999999999876543 3


Q ss_pred             HHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccC
Q 001902          902 TFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKG  956 (998)
Q Consensus       902 ~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~  956 (998)
                      .+..+.......+....+|.++.+||.+||+.||.+|||    +.++|+||||+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t----~~eil~hpwf~~  265 (271)
T d1nvra_         215 EYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARIT----IPDIKKDRWYNK  265 (271)
T ss_dssp             HHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCC----HHHHTTCTTTTC
T ss_pred             HHHHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCcC----HHHHhcCHhhCc
Confidence            344444444444444567899999999999999999999    999999999974


No 8  
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1e-51  Score=459.62  Aligned_cols=271  Identities=37%  Similarity=0.745  Sum_probs=236.7

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHH-hCCCCCccceeEEEeeCCeEEE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILD-MLDHPFVPALYASFQTKTHVCL  742 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~-~l~h~nIv~l~~~~~~~~~~~l  742 (998)
                      +++|++++.||+|+||+||+|.++.+|+.||||++++...........+..|..++. .++||||+++++++.+++.+||
T Consensus         1 iddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yi   80 (320)
T d1xjda_           1 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFF   80 (320)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             CCCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeE
Confidence            368999999999999999999999999999999998765444445566677777665 6899999999999999999999


Q ss_pred             EEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCC
Q 001902          743 ITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQ  822 (998)
Q Consensus       743 V~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~  822 (998)
                      |||||++|+|.+++...  ..+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+++.....  
T Consensus        81 vmEy~~~g~L~~~i~~~--~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~--  156 (320)
T d1xjda_          81 VMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLG--  156 (320)
T ss_dssp             EEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT--
T ss_pred             EEeecCCCcHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhcccc--
Confidence            99999999999999875  45899999999999999999999999999999999999999999999999999653211  


Q ss_pred             CCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChHHH
Q 001902          823 LLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKT  902 (998)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~~  902 (998)
                                               .......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+....
T Consensus       157 -------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~  211 (320)
T d1xjda_         157 -------------------------DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEEL  211 (320)
T ss_dssp             -------------------------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             -------------------------cccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHH
Confidence                                     1122345799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHH-HHHcCCCccCCChhhhh--cCCCCC
Q 001902          903 FANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGAN-EIKKHPFFKGVNWALVR--CMNPPE  969 (998)
Q Consensus       903 ~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~-elL~Hp~f~~~~~~~~~--~~~~~~  969 (998)
                      +..+......+|.  .+|.++.+||.+||..||.+||+    +. ++++||||++++|..++  .+.||.
T Consensus       212 ~~~i~~~~~~~p~--~~s~~~~dli~~~L~~dP~~R~s----~~~~l~~hpff~~~~~~~l~~~~~~pp~  275 (320)
T d1xjda_         212 FHSIRMDNPFYPR--WLEKEAKDLLVKLFVREPEKRLG----VRGDIRQHPLFREINWEELERKEIDPPF  275 (320)
T ss_dssp             HHHHHHCCCCCCT--TSCHHHHHHHHHHSCSSGGGSBT----TBSCGGGSGGGTTCCHHHHHTTCSCC--
T ss_pred             HHHHHcCCCCCCc--cCCHHHHHHHHHhcccCCCCCcC----HHHHHHhCchhccCCHHHHHhcCCCCCC
Confidence            9999888776664  46899999999999999999999    64 78999999999998774  344443


No 9  
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=1.3e-51  Score=456.33  Aligned_cols=254  Identities=26%  Similarity=0.372  Sum_probs=230.0

Q ss_pred             CcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEEEe
Q 001902          666 HFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLITD  745 (998)
Q Consensus       666 ~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV~E  745 (998)
                      .|++++.||+|+||.||+|.+..+|+.||||++...........+.+.+|+.+|++++|||||++++++.+.+.+|||||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            49999999999999999999999999999999987665566667789999999999999999999999999999999999


Q ss_pred             cCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCCCC
Q 001902          746 YCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQLLL  825 (998)
Q Consensus       746 ~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~~~  825 (998)
                      ||++|+|..++...  ..+++..++.++.||+.||.|||++|||||||||+|||++.+|.+||+|||+|....       
T Consensus        96 ~~~~g~l~~~~~~~--~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~-------  166 (309)
T d1u5ra_          96 YCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA-------  166 (309)
T ss_dssp             CCSEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSS-------
T ss_pred             ecCCCchHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccC-------
Confidence            99999998776654  459999999999999999999999999999999999999999999999999985432       


Q ss_pred             CcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcC---CCCCChhHHHHHHHHHHHHHcCCCCCCCCChHHH
Q 001902          826 PTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAG---AGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKT  902 (998)
Q Consensus       826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~---~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~~  902 (998)
                                              .....+||+.|||||++.+   ..|+.++|||||||++|+|++|..||.+.+....
T Consensus       167 ------------------------~~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~  222 (309)
T d1u5ra_         167 ------------------------PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA  222 (309)
T ss_dssp             ------------------------SBCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH
T ss_pred             ------------------------CCCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHH
Confidence                                    1124579999999999964   4588899999999999999999999999999888


Q ss_pred             HHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccC
Q 001902          903 FANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKG  956 (998)
Q Consensus       903 ~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~  956 (998)
                      +..+.....+.+....+|..+.+||.+||+.||.+|||    +.++|+||||+.
T Consensus       223 ~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt----~~ell~Hp~~~~  272 (309)
T d1u5ra_         223 LYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPT----SEVLLKHRFVLR  272 (309)
T ss_dssp             HHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCC----HHHHTTCHHHHS
T ss_pred             HHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCcC----HHHHHhCHHhcC
Confidence            88888887766666678999999999999999999999    999999999975


No 10 
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.9e-51  Score=452.74  Aligned_cols=264  Identities=30%  Similarity=0.470  Sum_probs=230.7

Q ss_pred             CCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccC---hhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEE
Q 001902          665 QHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLN---RNKVHRACAEREILDMLDHPFVPALYASFQTKTHVC  741 (998)
Q Consensus       665 ~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~---~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~  741 (998)
                      ++|++++.||+|+||+||+|+++.+|+.||||++.+.....   ....+.+.+|+.+|++++|||||+++++|.+.+.+|
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            57999999999999999999999999999999998654322   223577889999999999999999999999999999


Q ss_pred             EEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCC----cEEEEeccCcccc
Q 001902          742 LITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNG----HVSLTDFDLSCLT  817 (998)
Q Consensus       742 lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g----~vkL~DFG~a~~~  817 (998)
                      ||||||+||+|.+++...  +.+++..++.++.||+.||+|||++|||||||||+|||++.+|    .+||+|||+|...
T Consensus        90 iv~E~~~gg~L~~~i~~~--~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~  167 (293)
T d1jksa_          90 LILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI  167 (293)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEEC
T ss_pred             EEEEcCCCccccchhccc--cccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhc
Confidence            999999999999999775  4599999999999999999999999999999999999999776    5999999998654


Q ss_pred             CCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCC
Q 001902          818 SCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGK  897 (998)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~  897 (998)
                      ...                            .......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.
T Consensus       168 ~~~----------------------------~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  219 (293)
T d1jksa_         168 DFG----------------------------NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  219 (293)
T ss_dssp             TTS----------------------------CBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCC----------------------------ccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCC
Confidence            311                            1223457999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhCCCCCCCC--CCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccCCChhhh
Q 001902          898 TRQKTFANILHKDLKFPSS--TPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKGVNWALV  962 (998)
Q Consensus       898 ~~~~~~~~i~~~~~~~~~~--~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~~~~~~~  962 (998)
                      +..+.+..+......++..  ..+|..+++||.+||+.||.+|||    +.++|+||||+..+|...
T Consensus       220 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s----~~eil~hp~~~~~~~~~~  282 (293)
T d1jksa_         220 TKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMT----IQDSLQHPWIKPKDTQQA  282 (293)
T ss_dssp             SHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCC----HHHHHHSTTTCC------
T ss_pred             CHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcC----HHHHhcCcccCCCChhHh
Confidence            9999999998887665532  457889999999999999999999    999999999999888654


No 11 
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4.2e-52  Score=464.04  Aligned_cols=262  Identities=25%  Similarity=0.407  Sum_probs=221.1

Q ss_pred             cccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEE
Q 001902          662 INLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVC  741 (998)
Q Consensus       662 ~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~  741 (998)
                      +..++|++++.||+|+||+||+|.++.+|+.||+|+++...  .......+.+|+.+|++++|||||+++++|.+.+.+|
T Consensus         3 l~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~--~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~   80 (322)
T d1s9ja_           3 LKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEIS   80 (322)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCC--CTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEE
T ss_pred             CCccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhh--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            45678999999999999999999999999999999998642  3445578889999999999999999999999999999


Q ss_pred             EEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCCCCcEEEecCCcEEEEeccCccccCCC
Q 001902          742 LITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQ-GIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCK  820 (998)
Q Consensus       742 lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~-~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~  820 (998)
                      ||||||+||+|.+++.+.  +.+++..++.++.||+.||.|||++ ||+||||||+|||++.+|.+||+|||+|+.... 
T Consensus        81 iVmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~-  157 (322)
T d1s9ja_          81 ICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID-  157 (322)
T ss_dssp             EEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH-
T ss_pred             EEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCC-
Confidence            999999999999999875  4599999999999999999999974 999999999999999999999999999964320 


Q ss_pred             CCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChH
Q 001902          821 PQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQ  900 (998)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~  900 (998)
                                                  ....+.+||+.|||||++.+..|+.++|||||||++|+|++|+.||.+.+..
T Consensus       158 ----------------------------~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~  209 (322)
T d1s9ja_         158 ----------------------------SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAK  209 (322)
T ss_dssp             ----------------------------HTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTT
T ss_pred             ----------------------------CccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence                                        1123568999999999999999999999999999999999999999876543


Q ss_pred             HHH------------------------------------------HHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCc
Q 001902          901 KTF------------------------------------------ANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSR  938 (998)
Q Consensus       901 ~~~------------------------------------------~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~R  938 (998)
                      ...                                          ..+.....+.......|.++++||.+||+.||.+|
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R  289 (322)
T d1s9ja_         210 ELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAER  289 (322)
T ss_dssp             HHHHHC------------------------------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTS
T ss_pred             HHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHC
Confidence            211                                          11111111111122357899999999999999999


Q ss_pred             CCChhcHHHHHcCCCccCCChh
Q 001902          939 LGSHEGANEIKKHPFFKGVNWA  960 (998)
Q Consensus       939 pt~~~~a~elL~Hp~f~~~~~~  960 (998)
                      ||    ++++|+||||+..++.
T Consensus       290 ~t----a~e~L~Hpf~~~~~~~  307 (322)
T d1s9ja_         290 AD----LKQLMVHAFIKRSDAE  307 (322)
T ss_dssp             CC----HHHHHTSHHHHHHHHS
T ss_pred             cC----HHHHhhCHhhCcCCcc
Confidence            99    9999999999986654


No 12 
>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=2.4e-51  Score=453.94  Aligned_cols=256  Identities=30%  Similarity=0.497  Sum_probs=214.6

Q ss_pred             CCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEEE
Q 001902          665 QHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLIT  744 (998)
Q Consensus       665 ~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV~  744 (998)
                      +.|++++.||+|+||+||+|.++.+|+.||||++.+.....  ....+.+|+.+|++++||||+++++++.+++.+||||
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~--~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvm   86 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG--KEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIM   86 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC------------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh--HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            57999999999999999999999999999999998654322  2356778999999999999999999999999999999


Q ss_pred             ecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEe---cCCcEEEEeccCccccCCCC
Q 001902          745 DYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQ---GNGHVSLTDFDLSCLTSCKP  821 (998)
Q Consensus       745 E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~---~~g~vkL~DFG~a~~~~~~~  821 (998)
                      |||+||+|.+++...  ..+++..++.++.||+.||+|||++|||||||||+|||+.   .+|.+||+|||+|+..... 
T Consensus        87 E~~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~-  163 (307)
T d1a06a_          87 QLVSGGELFDRIVEK--GFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPG-  163 (307)
T ss_dssp             CCCCSCBHHHHHHTC--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC----------
T ss_pred             eccCCCcHHHhhhcc--cCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCC-
Confidence            999999999999764  4599999999999999999999999999999999999995   4789999999999643211 


Q ss_pred             CCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChHH
Q 001902          822 QLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQK  901 (998)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~  901 (998)
                                                 ......+||+.|||||++.+..|+.++|||||||++|+|++|.+||.+.+...
T Consensus       164 ---------------------------~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~  216 (307)
T d1a06a_         164 ---------------------------SVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAK  216 (307)
T ss_dssp             ------------------------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             ---------------------------CeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHH
Confidence                                       11234679999999999999999999999999999999999999999999989


Q ss_pred             HHHHHHhCCCCCC--CCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccC
Q 001902          902 TFANILHKDLKFP--SSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKG  956 (998)
Q Consensus       902 ~~~~i~~~~~~~~--~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~  956 (998)
                      ....+......++  ....+|.++.+||.+||..||.+|||    +.++|+||||++
T Consensus       217 ~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s----~~eil~hp~~~~  269 (307)
T d1a06a_         217 LFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFT----CEQALQHPWIAG  269 (307)
T ss_dssp             HHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCC----HHHHHHSTTTTS
T ss_pred             HHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcC----HHHHhcCHhhCC
Confidence            9899988766554  33568899999999999999999999    999999999986


No 13 
>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.1e-51  Score=452.51  Aligned_cols=258  Identities=25%  Similarity=0.412  Sum_probs=226.7

Q ss_pred             CCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEEE
Q 001902          665 QHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLIT  744 (998)
Q Consensus       665 ~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV~  744 (998)
                      +.|++++.||+|+||.||+|+++.+|+.||+|++...   .....+.+.+|+++|++++|||||++++++.+.+.+||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~---~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvm   88 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTK---SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILI   88 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS---SSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEE
Confidence            4699999999999999999999999999999999764   2334567888999999999999999999999999999999


Q ss_pred             ecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCCC
Q 001902          745 DYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQLL  824 (998)
Q Consensus       745 E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~~  824 (998)
                      |||+||+|.+++.+. ...+++..++.++.||+.||.|||++|||||||||+|||++.+|.+||+|||+|+....     
T Consensus        89 Ey~~~g~L~~~~~~~-~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~-----  162 (288)
T d2jfla1          89 EFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTR-----  162 (288)
T ss_dssp             ECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHH-----
T ss_pred             ecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCC-----
Confidence            999999999998654 24599999999999999999999999999999999999999999999999999854320     


Q ss_pred             CCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhc-----CCCCCChhHHHHHHHHHHHHHcCCCCCCCCCh
Q 001902          825 LPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIA-----GAGHTSAVDWWALGILLYEMLYGYTPFRGKTR  899 (998)
Q Consensus       825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~-----~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~  899 (998)
                                            ........+||+.|||||++.     +..|+.++|||||||++|+|++|++||.+.+.
T Consensus       163 ----------------------~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~  220 (288)
T d2jfla1         163 ----------------------TIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNP  220 (288)
T ss_dssp             ----------------------HHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCG
T ss_pred             ----------------------CcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCH
Confidence                                  001223567999999999984     45678999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCC-CCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccCC
Q 001902          900 QKTFANILHKDLKF-PSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKGV  957 (998)
Q Consensus       900 ~~~~~~i~~~~~~~-~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~~  957 (998)
                      .+.+..+.....+. +....+|.++.+||.+||+.||.+|||    +.++|+||||+.-
T Consensus       221 ~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t----~~ell~hp~~~~~  275 (288)
T d2jfla1         221 MRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWT----TSQLLQHPFVTVD  275 (288)
T ss_dssp             GGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSCC----HHHHTTSGGGCCC
T ss_pred             HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhHCcC----HHHHhcCcccCCC
Confidence            88888888876433 334567899999999999999999999    9999999999863


No 14 
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00  E-value=3.4e-51  Score=463.35  Aligned_cols=275  Identities=33%  Similarity=0.600  Sum_probs=227.2

Q ss_pred             ccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHH---HHHHHHHhCCCCCccceeEEEeeCCe
Q 001902          663 NLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRAC---AEREILDMLDHPFVPALYASFQTKTH  739 (998)
Q Consensus       663 ~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~---~E~~il~~l~h~nIv~l~~~~~~~~~  739 (998)
                      .+++|++++.||+|+||.||+|.+..+|+.||||++.+...........+.   .++.+++.++|||||+++++|.+.+.
T Consensus         2 slddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~   81 (364)
T d1omwa3           2 TMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK   81 (364)
T ss_dssp             CSTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSE
T ss_pred             CHHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCE
Confidence            467999999999999999999999999999999999765443332233333   44667777789999999999999999


Q ss_pred             EEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCC
Q 001902          740 VCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSC  819 (998)
Q Consensus       740 ~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~  819 (998)
                      +|||||||+||+|.+++.+.  ..+++..++.++.||+.||.|||++|||||||||+|||++.+|.+||+|||+|+....
T Consensus        82 ~~ivmE~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~  159 (364)
T d1omwa3          82 LSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK  159 (364)
T ss_dssp             EEEEECCCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSS
T ss_pred             EEEEEEecCCCcHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCC
Confidence            99999999999999999875  4589999999999999999999999999999999999999999999999999965431


Q ss_pred             CCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcC-CCCCChhHHHHHHHHHHHHHcCCCCCCCCC
Q 001902          820 KPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAG-AGHTSAVDWWALGILLYEMLYGYTPFRGKT  898 (998)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~sDIwSlG~il~eLltG~~Pf~~~~  898 (998)
                      .                             .....+||+.|||||++.. ..|+.++|||||||++|+|++|+.||.+.+
T Consensus       160 ~-----------------------------~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~  210 (364)
T d1omwa3         160 K-----------------------------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHK  210 (364)
T ss_dssp             S-----------------------------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSC
T ss_pred             C-----------------------------cccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCC
Confidence            1                             1234579999999999965 568999999999999999999999998765


Q ss_pred             hHHHH---HHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCCh-hcHHHHHcCCCccCCChhhh--hcCCCCCC
Q 001902          899 RQKTF---ANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSH-EGANEIKKHPFFKGVNWALV--RCMNPPEL  970 (998)
Q Consensus       899 ~~~~~---~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~-~~a~elL~Hp~f~~~~~~~~--~~~~~~~~  970 (998)
                      .....   ..+....  .+....+|.++.+||.+||..||.+|||.. ..|+++++||||++++|..+  ..+.||..
T Consensus       211 ~~~~~~~~~~~~~~~--~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~~~~~~~~p~~  286 (364)
T d1omwa3         211 TKDKHEIDRMTLTMA--VELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLI  286 (364)
T ss_dssp             SSCHHHHHHHSSSCC--CCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHHHTTCSCCSCC
T ss_pred             HHHHHHHHHhcccCC--CCCCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHcCccccCCCHHHHhcCCCCcCcC
Confidence            43222   2222222  233345799999999999999999999954 45899999999999999877  34445443


No 15 
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Probab=100.00  E-value=5e-51  Score=459.19  Aligned_cols=262  Identities=28%  Similarity=0.466  Sum_probs=233.2

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLI  743 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV  743 (998)
                      +++|++++.||+|+||.||+|.++.+|+.||+|++...   .....+.+.+|+.+|++++|||||+++++|.+.+.+|||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~---~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv  101 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP---HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  101 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCC---SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEccc---chhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            46899999999999999999999999999999999754   234456788999999999999999999999999999999


Q ss_pred             EecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEec--CCcEEEEeccCccccCCCC
Q 001902          744 TDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQG--NGHVSLTDFDLSCLTSCKP  821 (998)
Q Consensus       744 ~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~--~g~vkL~DFG~a~~~~~~~  821 (998)
                      ||||+||+|.+++... ...+++..++.|+.||+.||.|||++|||||||||+|||++.  +|.+||+|||+|...... 
T Consensus       102 mE~~~gg~L~~~l~~~-~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~-  179 (350)
T d1koaa2         102 YEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK-  179 (350)
T ss_dssp             ECCCCSCBHHHHHTCT-TSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTT-
T ss_pred             EEcCCCCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheecccc-
Confidence            9999999999998654 345999999999999999999999999999999999999964  678999999999654311 


Q ss_pred             CCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChHH
Q 001902          822 QLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQK  901 (998)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~  901 (998)
                                                 .......||+.|||||++.+..++.++|||||||++|+|++|+.||.+.+..+
T Consensus       180 ---------------------------~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~  232 (350)
T d1koaa2         180 ---------------------------QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE  232 (350)
T ss_dssp             ---------------------------SCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             ---------------------------cccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHH
Confidence                                       12234679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCC--CCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccCCChhh
Q 001902          902 TFANILHKDLKFPSS--TPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKGVNWAL  961 (998)
Q Consensus       902 ~~~~i~~~~~~~~~~--~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~~~~~~  961 (998)
                      .+..+......++..  ..+|.++++||.+||+.||.+|||    +.++|+||||+...+..
T Consensus       233 ~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t----~~eil~hp~~~~~~~~~  290 (350)
T d1koaa2         233 TLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMT----IHQALEHPWLTPGNAPG  290 (350)
T ss_dssp             HHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCC----HHHHHHSTTTSCTTCCS
T ss_pred             HHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcC----HHHHhcCcccCCCCCCC
Confidence            999998887665543  457899999999999999999999    99999999999876643


No 16 
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.2e-51  Score=445.78  Aligned_cols=257  Identities=25%  Similarity=0.455  Sum_probs=216.2

Q ss_pred             CCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEee--CCeEEE
Q 001902          665 QHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQT--KTHVCL  742 (998)
Q Consensus       665 ~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~--~~~~~l  742 (998)
                      ++|++++.||+|+||.||+|+++.+|+.||+|++..... +......+.+|+.++++++|||||++++++.+  .+.+||
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~i   82 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM-TEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   82 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTS-CHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhC-CHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEE
Confidence            579999999999999999999999999999999987643 44556778899999999999999999999864  567899


Q ss_pred             EEecCCCCchhHHHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHCC-----ceeccCCCCcEEEecCCcEEEEeccCcc
Q 001902          743 ITDYCPGGELFLLLDRQ--PTKVLKEDAVRFYAAEVVVALEYLHCQG-----IIYRDLKPENVLLQGNGHVSLTDFDLSC  815 (998)
Q Consensus       743 V~E~~~ggsL~~~l~~~--~~~~l~~~~~~~i~~qil~aL~~LH~~~-----IiHrDLkP~NILi~~~g~vkL~DFG~a~  815 (998)
                      |||||+||+|.+++.+.  ....+++..++.++.||+.||.|||++|     ||||||||+|||++.+|.+||+|||+|+
T Consensus        83 vmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~  162 (269)
T d2java1          83 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  162 (269)
T ss_dssp             EEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHH
T ss_pred             EEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeecccee
Confidence            99999999999998642  2356999999999999999999999976     9999999999999999999999999996


Q ss_pred             ccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCC
Q 001902          816 LTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFR  895 (998)
Q Consensus       816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~  895 (998)
                      .....                           .......+||+.|||||++.+..++.++|||||||++|+|++|..||.
T Consensus       163 ~~~~~---------------------------~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~  215 (269)
T d2java1         163 ILNHD---------------------------TSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFT  215 (269)
T ss_dssp             HC--------------------------------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ecccC---------------------------CCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCC
Confidence            54311                           112235689999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCc
Q 001902          896 GKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFF  954 (998)
Q Consensus       896 ~~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f  954 (998)
                      +.+..+.+..+..+.... ....+|.++.+||.+||..||.+|||    +.+||+|||+
T Consensus       216 ~~~~~~~~~~i~~~~~~~-~~~~~s~~l~~li~~~L~~dp~~Rps----~~ell~hp~i  269 (269)
T d2java1         216 AFSQKELAGKIREGKFRR-IPYRYSDELNEIITRMLNLKDYHRPS----VEEILENPLI  269 (269)
T ss_dssp             CSSHHHHHHHHHHTCCCC-CCTTSCHHHHHHHHHHTCSSGGGSCC----HHHHHTSTTC
T ss_pred             CCCHHHHHHHHHcCCCCC-CCcccCHHHHHHHHHHcCCChhHCcC----HHHHHhCCcC
Confidence            999888888888776542 23457899999999999999999999    9999999995


No 17 
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}
Probab=100.00  E-value=1.2e-50  Score=456.28  Aligned_cols=258  Identities=28%  Similarity=0.465  Sum_probs=230.9

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLI  743 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV  743 (998)
                      .+.|++++.||+|+||.||+|.+..+|+.||+|+++...   ......+.+|+.+|++++|||||+++++|.+++.+|||
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv  104 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY---PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  104 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcc---hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            357999999999999999999999999999999998643   33456778899999999999999999999999999999


Q ss_pred             EecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEe--cCCcEEEEeccCccccCCCC
Q 001902          744 TDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQ--GNGHVSLTDFDLSCLTSCKP  821 (998)
Q Consensus       744 ~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~--~~g~vkL~DFG~a~~~~~~~  821 (998)
                      ||||+||+|.+++... ...+++..++.++.||+.||.|||++|||||||||+|||++  .+|.+||+|||+|...... 
T Consensus       105 mE~~~gg~L~~~~~~~-~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~-  182 (352)
T d1koba_         105 LEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD-  182 (352)
T ss_dssp             EECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT-
T ss_pred             EEcCCCChHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCC-
Confidence            9999999999987654 34599999999999999999999999999999999999998  5789999999999654311 


Q ss_pred             CCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChHH
Q 001902          822 QLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQK  901 (998)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~  901 (998)
                                                 .......||+.|||||++.+..++.++|||||||++|+|++|.+||.+.+...
T Consensus       183 ---------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~  235 (352)
T d1koba_         183 ---------------------------EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE  235 (352)
T ss_dssp             ---------------------------SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH
T ss_pred             ---------------------------CceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                                       12234579999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCC--CCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccCC
Q 001902          902 TFANILHKDLKFPSS--TPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKGV  957 (998)
Q Consensus       902 ~~~~i~~~~~~~~~~--~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~~  957 (998)
                      .+..+......++..  ..+|.++.+||.+||+.||.+|||    +.++|+||||++.
T Consensus       236 ~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s----~~eil~Hp~~~~~  289 (352)
T d1koba_         236 TLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLT----VHDALEHPWLKGD  289 (352)
T ss_dssp             HHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCC----HHHHHTSTTTSSC
T ss_pred             HHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcC----HHHHhcCHhhCCC
Confidence            999999887766543  468999999999999999999999    9999999999874


No 18 
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.9e-50  Score=438.40  Aligned_cols=252  Identities=23%  Similarity=0.375  Sum_probs=214.9

Q ss_pred             cccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEee----CCeEEE
Q 001902          667 FRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQT----KTHVCL  742 (998)
Q Consensus       667 y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~----~~~~~l  742 (998)
                      |++.++||+|+||+||+|.+..+++.||+|.+..... .......+.+|+++|++++|||||++++++..    ...+||
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~i   89 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL-TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL   89 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEE
Confidence            4777889999999999999999999999999986543 44556788999999999999999999999864    457899


Q ss_pred             EEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCCCCcEEEe-cCCcEEEEeccCccccCC
Q 001902          743 ITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQG--IIYRDLKPENVLLQ-GNGHVSLTDFDLSCLTSC  819 (998)
Q Consensus       743 V~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~--IiHrDLkP~NILi~-~~g~vkL~DFG~a~~~~~  819 (998)
                      |||||++|+|.+++.+.  ..+++..++.++.||+.||+|||++|  ||||||||+|||++ .++.+||+|||+|+....
T Consensus        90 vmE~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~  167 (270)
T d1t4ha_          90 VTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  167 (270)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEeCCCCCcHHHHHhcc--ccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccC
Confidence            99999999999999775  45999999999999999999999998  99999999999997 478999999999854220


Q ss_pred             CCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCCh
Q 001902          820 KPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR  899 (998)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~  899 (998)
                                                   ......+||+.|||||++.+ .++.++|||||||++|+|++|+.||.+...
T Consensus       168 -----------------------------~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~  217 (270)
T d1t4ha_         168 -----------------------------SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN  217 (270)
T ss_dssp             -----------------------------TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS
T ss_pred             -----------------------------CccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCccc
Confidence                                         11235689999999999876 599999999999999999999999987655


Q ss_pred             HHH-HHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCcc
Q 001902          900 QKT-FANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFK  955 (998)
Q Consensus       900 ~~~-~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~  955 (998)
                      ... +..+..+..+.......++++.+||.+||..||++|||    +.++|+||||+
T Consensus       218 ~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s----~~ell~Hp~fk  270 (270)
T d1t4ha_         218 AAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYS----IKDLLNHAFFQ  270 (270)
T ss_dssp             HHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGC
T ss_pred             HHHHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcC----HHHHhCCcccC
Confidence            444 44444443333333456889999999999999999999    99999999996


No 19 
>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=100.00  E-value=2e-49  Score=431.96  Aligned_cols=260  Identities=30%  Similarity=0.452  Sum_probs=229.1

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccC------hhHHHHHHHHHHHHHhCC-CCCccceeEEEee
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLN------RNKVHRACAEREILDMLD-HPFVPALYASFQT  736 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~------~~~~~~~~~E~~il~~l~-h~nIv~l~~~~~~  736 (998)
                      .++|++.+.||+|+||+||+|++..+|+.||||++.+.....      ....+.+.+|+.++++++ ||||+++++++.+
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~   81 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   81 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence            368999999999999999999999999999999998754332      223456789999999996 9999999999999


Q ss_pred             CCeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccc
Q 001902          737 KTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCL  816 (998)
Q Consensus       737 ~~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~  816 (998)
                      ++.+|||||||+||+|.+++..+  +.+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.
T Consensus        82 ~~~~~ivmE~~~~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~  159 (277)
T d1phka_          82 NTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ  159 (277)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             CcceEEEEEcCCCchHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeE
Confidence            99999999999999999999775  4599999999999999999999999999999999999999999999999999965


Q ss_pred             cCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcC------CCCCChhHHHHHHHHHHHHHcC
Q 001902          817 TSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAG------AGHTSAVDWWALGILLYEMLYG  890 (998)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~------~~~~~~sDIwSlG~il~eLltG  890 (998)
                      .+..                            ......+||+.|+|||.+.+      ..++.++||||+||++|+|++|
T Consensus       160 ~~~~----------------------------~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g  211 (277)
T d1phka_         160 LDPG----------------------------EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAG  211 (277)
T ss_dssp             CCTT----------------------------CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHS
T ss_pred             ccCC----------------------------CceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccC
Confidence            4311                            11234579999999999853      3568899999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHhCCCCCC--CCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccCC
Q 001902          891 YTPFRGKTRQKTFANILHKDLKFP--SSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKGV  957 (998)
Q Consensus       891 ~~Pf~~~~~~~~~~~i~~~~~~~~--~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~~  957 (998)
                      +.||.+.+.......+..+...++  ....+|+++++||.+||+.||.+|||    +.++|+||||+..
T Consensus       212 ~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s----~~eil~h~~~~~~  276 (277)
T d1phka_         212 SPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYT----AEEALAHPFFQQY  276 (277)
T ss_dssp             SCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCC----HHHHTTSGGGCTT
T ss_pred             CCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhHCcC----HHHHHcCHHHHHh
Confidence            999999999998888988766544  33468999999999999999999999    9999999999863


No 20 
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.8e-49  Score=440.29  Aligned_cols=256  Identities=26%  Similarity=0.419  Sum_probs=228.4

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLI  743 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV  743 (998)
                      .++|++++.||+|+||+||+|.++.+|+.||+|+++...    .....+.+|+.+|+.++||||++++++|.+.+.+|||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~----~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lv   79 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG----TDQVLVKKEISILNIARHRNILHLHESFESMEELVMI   79 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc----ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            468999999999999999999999999999999997642    2335677899999999999999999999999999999


Q ss_pred             EecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecC--CcEEEEeccCccccCCCC
Q 001902          744 TDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGN--GHVSLTDFDLSCLTSCKP  821 (998)
Q Consensus       744 ~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~--g~vkL~DFG~a~~~~~~~  821 (998)
                      ||||+|++|.+++... ...+++..++.|+.||+.||.|||++||+||||||+|||++.+  +.+||+|||++...... 
T Consensus        80 mE~~~gg~L~~~i~~~-~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~-  157 (321)
T d1tkia_          80 FEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG-  157 (321)
T ss_dssp             ECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT-
T ss_pred             EecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccC-
Confidence            9999999999999765 2459999999999999999999999999999999999999854  48999999998653211 


Q ss_pred             CCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChHH
Q 001902          822 QLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQK  901 (998)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~  901 (998)
                                                 .......||+.|+|||.+.+..++.++|||||||++|+|++|..||.+.+...
T Consensus       158 ---------------------------~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~  210 (321)
T d1tkia_         158 ---------------------------DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ  210 (321)
T ss_dssp             ---------------------------CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             ---------------------------CcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHH
Confidence                                       12234578999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCC--CCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccC
Q 001902          902 TFANILHKDLKFPSS--TPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKG  956 (998)
Q Consensus       902 ~~~~i~~~~~~~~~~--~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~  956 (998)
                      .+..|......++..  ..+|.++++||.+||..||.+|||    +.++|+||||++
T Consensus       211 ~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s----~~eil~hp~~~~  263 (321)
T d1tkia_         211 IIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMT----ASEALQHPWLKQ  263 (321)
T ss_dssp             HHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCC----HHHHHHSHHHHS
T ss_pred             HHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcC----HHHHhcCHhhcc
Confidence            999999887766543  357899999999999999999999    999999999975


No 21 
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1e-48  Score=432.26  Aligned_cols=256  Identities=28%  Similarity=0.385  Sum_probs=211.9

Q ss_pred             cccccCCCCceeEEEEEEccCCeEEEEEEeecccccCh--hHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEEEec
Q 001902          669 PIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNR--NKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLITDY  746 (998)
Q Consensus       669 ~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~--~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV~E~  746 (998)
                      .++.||+|+||+||+|+++.+|+.||||+++.......  .....+.+|+.+|++++|||||++++++..++++||||||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            46789999999999999999999999999976533221  1235678999999999999999999999999999999999


Q ss_pred             CCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCCCCC
Q 001902          747 CPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQLLLP  826 (998)
Q Consensus       747 ~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~~~~  826 (998)
                      |.++++..+...  ...+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.....      
T Consensus        82 ~~~~~~~~~~~~--~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~------  153 (299)
T d1ua2a_          82 METDLEVIIKDN--SLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSP------  153 (299)
T ss_dssp             CSEEHHHHHTTC--CSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSC------
T ss_pred             hcchHHhhhhhc--ccCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCC------
Confidence            988877766644  356999999999999999999999999999999999999999999999999998654311      


Q ss_pred             cchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCC-CCCChhHHHHHHHHHHHHHcCCCCCCCCChHHHHHH
Q 001902          827 TTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGA-GHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFAN  905 (998)
Q Consensus       827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~~~~~  905 (998)
                                           .......+||+.|+|||++.+. .|+.++|||||||++|+|++|.+||.+.+..+.+..
T Consensus       154 ---------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~  212 (299)
T d1ua2a_         154 ---------------------NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTR  212 (299)
T ss_dssp             ---------------------CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH
T ss_pred             ---------------------cccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHH
Confidence                                 1122345799999999998754 578999999999999999999999999998888877


Q ss_pred             HHhCCC-----CC---------------CC------CCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccCC
Q 001902          906 ILHKDL-----KF---------------PS------STPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKGV  957 (998)
Q Consensus       906 i~~~~~-----~~---------------~~------~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~~  957 (998)
                      +.+...     .+               +.      ....+.++.+||.+||+.||++|||    +.++|+||||+..
T Consensus       213 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~s----a~e~L~Hp~f~~~  286 (299)
T d1ua2a_         213 IFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARIT----ATQALKMKYFSNR  286 (299)
T ss_dssp             HHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCC----HHHHHTSGGGTSS
T ss_pred             HHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcC----HHHHhCCHhhCCC
Confidence            764210     00               00      1235788999999999999999999    9999999999874


No 22 
>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.7e-48  Score=428.67  Aligned_cols=261  Identities=26%  Similarity=0.452  Sum_probs=217.7

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLI  743 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV  743 (998)
                      +++|++++.||+|+||+||+|.+..+|+.||||+++.... .......+.+|+++|++++||||+++++++.+.+.+|+|
T Consensus         1 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv   79 (298)
T d1gz8a_           1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV   79 (298)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhc-ChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEE
Confidence            3689999999999999999999999999999999976532 233456788999999999999999999999999999999


Q ss_pred             EecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCC
Q 001902          744 TDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQL  823 (998)
Q Consensus       744 ~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~  823 (998)
                      ||||. +++.+++.......+++..++.++.||+.||.|||++|||||||||+|||++.++.+||+|||+|+.....   
T Consensus        80 ~e~~~-~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~---  155 (298)
T d1gz8a_          80 FEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP---  155 (298)
T ss_dssp             EECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCC---
T ss_pred             EeecC-CchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCC---
Confidence            99995 55555555544567999999999999999999999999999999999999999999999999998654311   


Q ss_pred             CCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCC-CCChhHHHHHHHHHHHHHcCCCCCCCCChHHH
Q 001902          824 LLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAG-HTSAVDWWALGILLYEMLYGYTPFRGKTRQKT  902 (998)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~-~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~~  902 (998)
                                              ........||+.|+|||++.... ++.++|||||||++|+|++|+.||.+.+....
T Consensus       156 ------------------------~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~  211 (298)
T d1gz8a_         156 ------------------------VRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQ  211 (298)
T ss_dssp             ------------------------SBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             ------------------------cccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHH
Confidence                                    12233457999999999987765 47899999999999999999999999888777


Q ss_pred             HHHHHhCCCC------------------CCC---------CCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCcc
Q 001902          903 FANILHKDLK------------------FPS---------STPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFK  955 (998)
Q Consensus       903 ~~~i~~~~~~------------------~~~---------~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~  955 (998)
                      +..+......                  ++.         ....|.++++||.+||..||.+|||    +.+||+||||+
T Consensus       212 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t----~~ell~H~ff~  287 (298)
T d1gz8a_         212 LFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRIS----AKAALAHPFFQ  287 (298)
T ss_dssp             HHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCC----HHHHHTSGGGT
T ss_pred             HHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcC----HHHHhCCHhhc
Confidence            7766542100                  000         1245788999999999999999999    99999999998


Q ss_pred             CC
Q 001902          956 GV  957 (998)
Q Consensus       956 ~~  957 (998)
                      .+
T Consensus       288 ~~  289 (298)
T d1gz8a_         288 DV  289 (298)
T ss_dssp             TC
T ss_pred             cC
Confidence            76


No 23 
>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=3.9e-48  Score=424.27  Aligned_cols=257  Identities=22%  Similarity=0.268  Sum_probs=219.8

Q ss_pred             cccccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCe
Q 001902          660 EQINLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTH  739 (998)
Q Consensus       660 ~~~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~  739 (998)
                      +++..++|++.+.||+|+||+||+|.+..+|+.||||+++.+.    ...+.+.+|+.+|++++|||||++++++.+.+.
T Consensus        12 wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~----~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   87 (287)
T d1opja_          12 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP   87 (287)
T ss_dssp             TBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             cEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc----chHHHHHHHHHHHHhCCCCCEecCCccEeeCCe
Confidence            4566778999999999999999999999999999999987643    234678899999999999999999999999999


Q ss_pred             EEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCC
Q 001902          740 VCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSC  819 (998)
Q Consensus       740 ~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~  819 (998)
                      +|||||||++|+|.+++.......+++..+..++.||+.||+|||++|||||||||+|||++.++.+||+|||+|+....
T Consensus        88 ~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (287)
T d1opja_          88 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG  167 (287)
T ss_dssp             CEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCS
T ss_pred             eEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCC
Confidence            99999999999999999876667899999999999999999999999999999999999999999999999999965432


Q ss_pred             CCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCCh
Q 001902          820 KPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR  899 (998)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~  899 (998)
                      ...                          .......|++.|+|||++.+..++.++|||||||++|+|++|..||.....
T Consensus       168 ~~~--------------------------~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~  221 (287)
T d1opja_         168 DTY--------------------------TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID  221 (287)
T ss_dssp             SSS--------------------------EEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             CCc--------------------------eeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcch
Confidence            111                          112234589999999999999999999999999999999997666555444


Q ss_pred             HHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHc
Q 001902          900 QKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKK  950 (998)
Q Consensus       900 ~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~  950 (998)
                      ...+..++......+....++..+.+||.+||..||.+|||    +.++++
T Consensus       222 ~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps----~~ei~~  268 (287)
T d1opja_         222 LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPS----FAEIHQ  268 (287)
T ss_dssp             HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             HHHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHhHCcC----HHHHHH
Confidence            44455555555555555678999999999999999999999    666654


No 24 
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.3e-48  Score=437.15  Aligned_cols=253  Identities=25%  Similarity=0.435  Sum_probs=211.9

Q ss_pred             cCCccccc-ccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHh-CCCCCccceeEEEee----C
Q 001902          664 LQHFRPIK-PLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDM-LDHPFVPALYASFQT----K  737 (998)
Q Consensus       664 ~~~y~~~~-~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~-l~h~nIv~l~~~~~~----~  737 (998)
                      .++|+++. .||+|+||+||+|.+..+++.||||+++..        ..+.+|+.++.+ ++|||||+++++|.+    .
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~--------~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~   81 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYENLYAGR   81 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc--------HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCC
Confidence            56899886 599999999999999999999999998753        456779988755 589999999999875    4


Q ss_pred             CeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEec---CCcEEEEeccCc
Q 001902          738 THVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQG---NGHVSLTDFDLS  814 (998)
Q Consensus       738 ~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~---~g~vkL~DFG~a  814 (998)
                      .++|||||||+||+|.+++.......+++..++.|+.||+.||+|||++||+||||||+|||++.   ++.+||+|||+|
T Consensus        82 ~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a  161 (335)
T d2ozaa1          82 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  161 (335)
T ss_dssp             EEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             CEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccccccccccccee
Confidence            67999999999999999998765567999999999999999999999999999999999999985   567999999999


Q ss_pred             cccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCC
Q 001902          815 CLTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPF  894 (998)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf  894 (998)
                      +.....                            ......+||+.|||||++.+..|+.++|||||||++|+|+||++||
T Consensus       162 ~~~~~~----------------------------~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf  213 (335)
T d2ozaa1         162 KETTSH----------------------------NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPF  213 (335)
T ss_dssp             EECCCC----------------------------CCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSC
T ss_pred             eeccCC----------------------------CccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCC
Confidence            654311                            1223457999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHh----CCCCCCCC--CCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccC
Q 001902          895 RGKTRQKTFANILH----KDLKFPSS--TPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKG  956 (998)
Q Consensus       895 ~~~~~~~~~~~i~~----~~~~~~~~--~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~  956 (998)
                      .+.+.......+..    ....+|..  ..+|.++.+||.+||+.||.+|||    +.++|+||||+.
T Consensus       214 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s----~~eil~hp~~~~  277 (335)
T d2ozaa1         214 YSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMT----ITEFMNHPWIMQ  277 (335)
T ss_dssp             EETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCC----HHHHHHSHHHHT
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcC----HHHHHcCHHhhC
Confidence            88765554443332    33333332  347889999999999999999999    999999999975


No 25 
>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=9.9e-48  Score=418.39  Aligned_cols=252  Identities=27%  Similarity=0.377  Sum_probs=214.3

Q ss_pred             CCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChh---HHHHHHHHHHHHHhCC--CCCccceeEEEeeCCe
Q 001902          665 QHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRN---KVHRACAEREILDMLD--HPFVPALYASFQTKTH  739 (998)
Q Consensus       665 ~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~---~~~~~~~E~~il~~l~--h~nIv~l~~~~~~~~~  739 (998)
                      ++|++.+.||+|+||.||+|.+..+|+.||||++.+....+..   ...++.+|+.++++++  ||||++++++|.+.+.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            5899999999999999999999999999999999865443321   1234567999999996  8999999999999999


Q ss_pred             EEEEEecCCC-CchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecC-CcEEEEeccCcccc
Q 001902          740 VCLITDYCPG-GELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGN-GHVSLTDFDLSCLT  817 (998)
Q Consensus       740 ~~lV~E~~~g-gsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~-g~vkL~DFG~a~~~  817 (998)
                      +|+||||+.+ +++.+++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.+ +.+||+|||+|+..
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~--~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~  161 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALL  161 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             EEEEEEeccCcchHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceec
Confidence            9999999976 5788888764  459999999999999999999999999999999999999954 79999999998543


Q ss_pred             CCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCC-CChhHHHHHHHHHHHHHcCCCCCCC
Q 001902          818 SCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGH-TSAVDWWALGILLYEMLYGYTPFRG  896 (998)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~-~~~sDIwSlG~il~eLltG~~Pf~~  896 (998)
                      ..                             ......+||+.|+|||++.+..+ +.++|||||||++|+|++|+.||.+
T Consensus       162 ~~-----------------------------~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~  212 (273)
T d1xwsa_         162 KD-----------------------------TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEH  212 (273)
T ss_dssp             CS-----------------------------SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred             cc-----------------------------ccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCC
Confidence            21                             11234679999999999987665 5679999999999999999999976


Q ss_pred             CChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccCCCh
Q 001902          897 KTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKGVNW  959 (998)
Q Consensus       897 ~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~~~~  959 (998)
                      .      ..+......++.  .+|.++++||.+||..||.+|||    ++++|+||||+.+..
T Consensus       213 ~------~~i~~~~~~~~~--~~s~~~~~li~~~L~~dp~~R~s----~~eil~hp~~~~~~~  263 (273)
T d1xwsa_         213 D------EEIIRGQVFFRQ--RVSSECQHLIRWCLALRPSDRPT----FEEIQNHPWMQDVLL  263 (273)
T ss_dssp             H------HHHHHCCCCCSS--CCCHHHHHHHHHHTCSSGGGSCC----HHHHHTSGGGSSCCC
T ss_pred             c------hHHhhcccCCCC--CCCHHHHHHHHHHccCCHhHCcC----HHHHhcCHhhCCCCC
Confidence            3      245566555544  47899999999999999999999    999999999998643


No 26 
>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.3e-47  Score=414.27  Aligned_cols=257  Identities=21%  Similarity=0.287  Sum_probs=210.3

Q ss_pred             cccccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCe
Q 001902          660 EQINLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTH  739 (998)
Q Consensus       660 ~~~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~  739 (998)
                      +.+..++|++.+.||+|+||.||+|...   ..||||+++.... +....+.+.+|+.+|++++|||||++++++. .+.
T Consensus         3 wei~~~~~~~~~~lG~G~fg~Vy~~~~~---~~vAvK~~~~~~~-~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-~~~   77 (276)
T d1uwha_           3 WEIPDGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAP-TPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQ   77 (276)
T ss_dssp             CBCCTTCCCCCSEEEECSSCEEEEEESS---SEEEEEECCCSSC-CTTHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSS
T ss_pred             cccccccEEEEEEEeeCCCcEEEEEEEC---CEEEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCCCEeeeeEEEe-ccE
Confidence            4567789999999999999999999753   3699999976533 4456778899999999999999999999765 456


Q ss_pred             EEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCC
Q 001902          740 VCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSC  819 (998)
Q Consensus       740 ~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~  819 (998)
                      +|||||||++|+|.+++.... ..+++..+..++.||++||+|||++|||||||||+|||++.++.+||+|||+|+....
T Consensus        78 ~~lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~  156 (276)
T d1uwha_          78 LAIVTQWCEGSSLYHHLHIIE-TKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSR  156 (276)
T ss_dssp             CEEEEECCCEEEHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC---
T ss_pred             EEEEEecCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccc
Confidence            899999999999999997653 4599999999999999999999999999999999999999999999999999965431


Q ss_pred             CCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcC---CCCCChhHHHHHHHHHHHHHcCCCCCCC
Q 001902          820 KPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAG---AGHTSAVDWWALGILLYEMLYGYTPFRG  896 (998)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~---~~~~~~sDIwSlG~il~eLltG~~Pf~~  896 (998)
                      ..                         .........||+.|||||++.+   ..|+.++|||||||++|||+||+.||.+
T Consensus       157 ~~-------------------------~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~  211 (276)
T d1uwha_         157 WS-------------------------GSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSN  211 (276)
T ss_dssp             ----------------------------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             cC-------------------------CcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCC
Confidence            11                         0112245679999999999965   3578899999999999999999999998


Q ss_pred             CChHHHHHHHHhCCCCCC----CCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcC
Q 001902          897 KTRQKTFANILHKDLKFP----SSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKH  951 (998)
Q Consensus       897 ~~~~~~~~~i~~~~~~~~----~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~H  951 (998)
                      .+....+..++......|    ....++.++.+||.+||..||.+|||    +.+|++|
T Consensus       212 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt----~~~il~~  266 (276)
T d1uwha_         212 INNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPL----FPQILAS  266 (276)
T ss_dssp             CCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhHCcC----HHHHHHH
Confidence            777666655554433322    23456889999999999999999999    7777665


No 27 
>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4.1e-47  Score=420.70  Aligned_cols=262  Identities=24%  Similarity=0.385  Sum_probs=215.0

Q ss_pred             cCCcccccccCCCCceeEEEEEEccC-CeEEEEEEeecccccChhHHHHHHHHHHHHHhC---CCCCccceeEEEee---
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGS-GQYFAMKAMDKGVMLNRNKVHRACAEREILDML---DHPFVPALYASFQT---  736 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~-~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l---~h~nIv~l~~~~~~---  736 (998)
                      .++|++++.||+|+||+||+|++..+ ++.||||+++...... .....+.+|+.+|+.|   +||||++++++|..   
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~   84 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   84 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT-SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccc-hHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccc
Confidence            46899999999999999999999765 6789999997653322 2223445677776665   89999999999853   


Q ss_pred             --CCeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCc
Q 001902          737 --KTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLS  814 (998)
Q Consensus       737 --~~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a  814 (998)
                        ...+|++|||+.++.+...... ....+++..++.++.||+.||+|||++|||||||||+|||++.++.+||+|||++
T Consensus        85 ~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~  163 (305)
T d1blxa_          85 DRETKLTLVFEHVDQDLTTYLDKV-PEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA  163 (305)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHHS-CTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred             ccCceEEEEEEeccCCchhhhhhc-cCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhh
Confidence              3578999999987776554433 3456999999999999999999999999999999999999999999999999998


Q ss_pred             cccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCC
Q 001902          815 CLTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPF  894 (998)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf  894 (998)
                      .....                            .......+||+.|+|||++.+..|+.++|||||||++|+|++|++||
T Consensus       164 ~~~~~----------------------------~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf  215 (305)
T d1blxa_         164 RIYSF----------------------------QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLF  215 (305)
T ss_dssp             CCCCG----------------------------GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             hhhcc----------------------------cccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCC
Confidence            54321                            11234567999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHhCCC-----CC--------------------CCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHH
Q 001902          895 RGKTRQKTFANILHKDL-----KF--------------------PSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIK  949 (998)
Q Consensus       895 ~~~~~~~~~~~i~~~~~-----~~--------------------~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL  949 (998)
                      .+.+..+.+..+.....     .+                    ......+..+.+||.+||++||.+|||    +.++|
T Consensus       216 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~s----a~e~L  291 (305)
T d1blxa_         216 RGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRIS----AYSAL  291 (305)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCC----HHHHH
T ss_pred             CCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcC----HHHHh
Confidence            99988888777754200     00                    012346788999999999999999999    99999


Q ss_pred             cCCCccCCCh
Q 001902          950 KHPFFKGVNW  959 (998)
Q Consensus       950 ~Hp~f~~~~~  959 (998)
                      +||||+.+++
T Consensus       292 ~Hpff~~i~~  301 (305)
T d1blxa_         292 SHPYFQDLER  301 (305)
T ss_dssp             TSGGGTTCCC
T ss_pred             cChhhcCchh
Confidence            9999998764


No 28 
>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00  E-value=2.7e-47  Score=416.14  Aligned_cols=251  Identities=23%  Similarity=0.357  Sum_probs=213.9

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCC----e
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKT----H  739 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~----~  739 (998)
                      .++|++.+.||+|+||.||+|.+..+|+.||||++++....+......+.+|+.+++.++||||+++++++...+    .
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            367999999999999999999999999999999999876667777788999999999999999999999997643    4


Q ss_pred             EEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCC
Q 001902          740 VCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSC  819 (998)
Q Consensus       740 ~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~  819 (998)
                      +|||||||+|++|.+++...  +.+++..++.++.||+.||+|||++|||||||||+|||++.++.++|+|||.+.....
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~--~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~  163 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIAD  163 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC-
T ss_pred             EEEEEECCCCCEehhhhccc--CCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhcc
Confidence            89999999999999998775  4599999999999999999999999999999999999999999999999998855331


Q ss_pred             CCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCCh
Q 001902          820 KPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTR  899 (998)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~  899 (998)
                      ...                        ........+||+.|||||++.+..++.++|||||||++|+|+||.+||.+.+.
T Consensus       164 ~~~------------------------~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~  219 (277)
T d1o6ya_         164 SGN------------------------SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP  219 (277)
T ss_dssp             ---------------------------------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             ccc------------------------cccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCH
Confidence            111                        11223456899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCC--CCCCCcHHHHHHHHHccccCccCcCC
Q 001902          900 QKTFANILHKDLKFP--SSTPTSLHAKQLMYRLLHRDPKSRLG  940 (998)
Q Consensus       900 ~~~~~~i~~~~~~~~--~~~~~s~~l~~Ll~~~L~~dP~~Rpt  940 (998)
                      .+.+..++......+  ....+|.++.+||.+||..||.+||+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~  262 (277)
T d1o6ya_         220 VSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQ  262 (277)
T ss_dssp             HHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCS
T ss_pred             HHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHh
Confidence            888888887765543  23567899999999999999999995


No 29 
>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.6e-47  Score=416.40  Aligned_cols=263  Identities=23%  Similarity=0.346  Sum_probs=220.1

Q ss_pred             ccccccccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEee
Q 001902          657 DSGEQINLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQT  736 (998)
Q Consensus       657 ~~~~~~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~  736 (998)
                      ...+.+..++|++++.||+|+||.||+|.+. +++.||||+++....    ..+.+.+|+.++++++|||||++++++..
T Consensus         5 ~~~wei~~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~~~~~~~----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~   79 (272)
T d1qpca_           5 EDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSM----SPDAFLAEANLMKQLQHQRLVRLYAVVTQ   79 (272)
T ss_dssp             TCTTBCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CCCeecCHHHeEEeEEEecCCCcEEEEEEEC-CCCEEEEEEEccCcC----CHHHHHHHHHHHHhCCCCCEeEEEeeecc
Confidence            3455677789999999999999999999984 678999999975432    24578899999999999999999998754


Q ss_pred             CCeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccc
Q 001902          737 KTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCL  816 (998)
Q Consensus       737 ~~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~  816 (998)
                       +.+|||||||++|+|.+++.......+++..+..++.||+.||.|||++||+||||||+||||+.++.+||+|||+|+.
T Consensus        80 -~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~  158 (272)
T d1qpca_          80 -EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL  158 (272)
T ss_dssp             -SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             -CCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEE
Confidence             5679999999999999988765445699999999999999999999999999999999999999999999999999966


Q ss_pred             cCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHc-CCCCCC
Q 001902          817 TSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLY-GYTPFR  895 (998)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLlt-G~~Pf~  895 (998)
                      .....                          ........||+.|||||++.+..++.++|||||||++|||+| |.+||.
T Consensus       159 ~~~~~--------------------------~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~  212 (272)
T d1qpca_         159 IEDNE--------------------------YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP  212 (272)
T ss_dssp             CSSSC--------------------------EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             ccCCc--------------------------cccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCC
Confidence            43111                          112234579999999999999999999999999999999999 556666


Q ss_pred             CCChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHc--CCCccC
Q 001902          896 GKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKK--HPFFKG  956 (998)
Q Consensus       896 ~~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~--Hp~f~~  956 (998)
                      ..+....+..+..+ ...+....++.++.+|+.+||+.||.+|||    +.++++  |+||+.
T Consensus       213 ~~~~~~~~~~i~~~-~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt----~~ei~~~L~~~fts  270 (272)
T d1qpca_         213 GMTNPEVIQNLERG-YRMVRPDNCPEELYQLMRLCWKERPEDRPT----FDYLRSVLEDFFTA  270 (272)
T ss_dssp             TCCHHHHHHHHHTT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc-CCCCCcccChHHHHHHHHHHcCCCHhHCcC----HHHHHHHhhhhhhc
Confidence            66666666666554 333444567899999999999999999999    788877  788864


No 30 
>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3e-47  Score=425.18  Aligned_cols=261  Identities=21%  Similarity=0.311  Sum_probs=220.3

Q ss_pred             cccccCCcccccccCCCCceeEEEEEEccCC-----eEEEEEEeecccccChhHHHHHHHHHHHHHhC-CCCCccceeEE
Q 001902          660 EQINLQHFRPIKPLGSGDTGSVHLVELCGSG-----QYFAMKAMDKGVMLNRNKVHRACAEREILDML-DHPFVPALYAS  733 (998)
Q Consensus       660 ~~~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~-----~~valK~i~~~~~~~~~~~~~~~~E~~il~~l-~h~nIv~l~~~  733 (998)
                      +++..++|++.+.||+|+||+||+|.+..++     ..||+|.+....  .......+.+|+.++.++ +|||||+++++
T Consensus        32 wei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~  109 (325)
T d1rjba_          32 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA--DSSEREALMSELKMMTQLGSHENIVNLLGA  109 (325)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEecccc--CHHHHHHHHHHHHHHHHhcCCCcEeEEEEE
Confidence            3466678999999999999999999987654     379999886542  233456788999999998 89999999999


Q ss_pred             EeeCCeEEEEEecCCCCchhHHHhhCCC---------------------CCCCHHHHHHHHHHHHHHHHHHHHCCceecc
Q 001902          734 FQTKTHVCLITDYCPGGELFLLLDRQPT---------------------KVLKEDAVRFYAAEVVVALEYLHCQGIIYRD  792 (998)
Q Consensus       734 ~~~~~~~~lV~E~~~ggsL~~~l~~~~~---------------------~~l~~~~~~~i~~qil~aL~~LH~~~IiHrD  792 (998)
                      +...+.+|||||||++|+|.+++..+..                     ..+++..++.++.||+.||+|||++||||||
T Consensus       110 ~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRD  189 (325)
T d1rjba_         110 CTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRD  189 (325)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred             EeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeecc
Confidence            9999999999999999999999976432                     3589999999999999999999999999999


Q ss_pred             CCCCcEEEecCCcEEEEeccCccccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCC
Q 001902          793 LKPENVLLQGNGHVSLTDFDLSCLTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHT  872 (998)
Q Consensus       793 LkP~NILi~~~g~vkL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~  872 (998)
                      |||+|||++.++.+||+|||+|+.......                         ........||+.|||||++.+..++
T Consensus       190 lKp~Nill~~~~~~Kl~DFGla~~~~~~~~-------------------------~~~~~~~~gt~~y~aPE~l~~~~~~  244 (325)
T d1rjba_         190 LAARNVLVTHGKVVKICDFGLARDIMSDSN-------------------------YVVRGNARLPVKWMAPESLFEGIYT  244 (325)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCGGGCTT-------------------------SEEETTEEECGGGCCHHHHHHCCCC
T ss_pred             CchhccccccCCeEEEeeccccccccCCCc-------------------------eeeeccccCCCccCChHHHcCCCCC
Confidence            999999999999999999999965431110                         1122345689999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcC
Q 001902          873 SAVDWWALGILLYEMLY-GYTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKH  951 (998)
Q Consensus       873 ~~sDIwSlG~il~eLlt-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~H  951 (998)
                      .++|||||||++|||++ |.+||.+.+....+..++.....++....++.++.+||.+||+.||++|||    +.+|++|
T Consensus       245 ~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt----~~ei~~~  320 (325)
T d1rjba_         245 IKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPS----FPNLTSF  320 (325)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             cceeccchhHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcC----HHHHHHH
Confidence            99999999999999997 999999988777778888877766666678999999999999999999999    7777765


No 31 
>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.3e-47  Score=423.73  Aligned_cols=285  Identities=41%  Similarity=0.732  Sum_probs=232.5

Q ss_pred             cccCCcccccccCCCCceeEEEEEE---ccCCeEEEEEEeeccccc-ChhHHHHHHHHHHHHHhCCC-CCccceeEEEee
Q 001902          662 INLQHFRPIKPLGSGDTGSVHLVEL---CGSGQYFAMKAMDKGVML-NRNKVHRACAEREILDMLDH-PFVPALYASFQT  736 (998)
Q Consensus       662 ~~~~~y~~~~~LG~G~~g~Vy~a~~---~~~~~~valK~i~~~~~~-~~~~~~~~~~E~~il~~l~h-~nIv~l~~~~~~  736 (998)
                      +.+++|++++.||+|+||.||+|.+   ..+|+.||||++++.... +....+.+.+|+.++++++| |||+++++++.+
T Consensus        21 ~~l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~  100 (322)
T d1vzoa_          21 VGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT  100 (322)
T ss_dssp             CCGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE
T ss_pred             cchhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeecc
Confidence            4568899999999999999999998   346899999999765432 22334567889999999976 899999999999


Q ss_pred             CCeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccc
Q 001902          737 KTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCL  816 (998)
Q Consensus       737 ~~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~  816 (998)
                      ...+++||||+.+++|.+++...  ..+++..++.++.||+.||.|||++|||||||||+|||++.+|.+||+|||+|..
T Consensus       101 ~~~~~~v~e~~~~~~L~~~i~~~--~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~  178 (322)
T d1vzoa_         101 ETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKE  178 (322)
T ss_dssp             TTEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred             CCceeeeeecccccHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhh
Confidence            99999999999999999999875  4488999999999999999999999999999999999999999999999999865


Q ss_pred             cCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCC--CCCChhHHHHHHHHHHHHHcCCCCC
Q 001902          817 TSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGA--GHTSAVDWWALGILLYEMLYGYTPF  894 (998)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~--~~~~~sDIwSlG~il~eLltG~~Pf  894 (998)
                      +....                          ........|++.|+|||.+.+.  .++.++|||||||+||+|++|+.||
T Consensus       179 ~~~~~--------------------------~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF  232 (322)
T d1vzoa_         179 FVADE--------------------------TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPF  232 (322)
T ss_dssp             CCGGG--------------------------GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             hcccc--------------------------cccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCC
Confidence            43111                          1122345799999999999764  4677999999999999999999999


Q ss_pred             CCCChHHHHHH----HHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCCh-hcHHHHHcCCCccCCChhhhhcCCCCC
Q 001902          895 RGKTRQKTFAN----ILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSH-EGANEIKKHPFFKGVNWALVRCMNPPE  969 (998)
Q Consensus       895 ~~~~~~~~~~~----i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~-~~a~elL~Hp~f~~~~~~~~~~~~~~~  969 (998)
                      .+.+.......    ......++|  ..+|.++.+||.+||..||.+|||+. ..++|+|+||||++++|..+.....|.
T Consensus       233 ~~~~~~~~~~~i~~~~~~~~~~~~--~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i~~~~l~~~~~~~  310 (322)
T d1vzoa_         233 TVDGEKNSQAEISRRILKSEPPYP--QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPA  310 (322)
T ss_dssp             SCTTSCCCHHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHHHTTCSCC
T ss_pred             CCCCHHHHHHHHHHhcccCCCCCc--ccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcCCCHHHHHhCCCCc
Confidence            87654433333    333444433  35799999999999999999999654 248999999999999999886655554


Q ss_pred             CCCCCCC
Q 001902          970 LDAPLFA  976 (998)
Q Consensus       970 ~~~p~~~  976 (998)
                      .-.|.+.
T Consensus       311 p~~p~~~  317 (322)
T d1vzoa_         311 PFKPVIR  317 (322)
T ss_dssp             SCCCCCC
T ss_pred             CCCCCCC
Confidence            4446554


No 32 
>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.5e-46  Score=423.70  Aligned_cols=258  Identities=28%  Similarity=0.429  Sum_probs=213.3

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCC-----
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKT-----  738 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~-----  738 (998)
                      .++|++++.||+|+||+||+|.++.+|+.||||++++.. ......+.+.+|+.+|+.++|||||+++++|...+     
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~-~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~   95 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF-QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF   95 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTT-SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhh-cChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccccc
Confidence            478999999999999999999999999999999998653 34556678899999999999999999999997654     


Q ss_pred             -eEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCcccc
Q 001902          739 -HVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLT  817 (998)
Q Consensus       739 -~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~  817 (998)
                       ++|+||||| +.+|..+++.   ..+++..++.++.||+.||.|||++|||||||||+|||++.++.+||+|||+|...
T Consensus        96 ~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~  171 (346)
T d1cm8a_          96 TDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQA  171 (346)
T ss_dssp             CCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             ceEEEEEecc-cccHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceecc
Confidence             579999999 7788888765   34999999999999999999999999999999999999999999999999999553


Q ss_pred             CCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCC-CCCChhHHHHHHHHHHHHHcCCCCCCC
Q 001902          818 SCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGA-GHTSAVDWWALGILLYEMLYGYTPFRG  896 (998)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDIwSlG~il~eLltG~~Pf~~  896 (998)
                      .                              ......+||+.|+|||++.+. .++.++|||||||++|+|++|++||.+
T Consensus       172 ~------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~  221 (346)
T d1cm8a_         172 D------------------------------SEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKG  221 (346)
T ss_dssp             C------------------------------SSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             C------------------------------CccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCC
Confidence            2                              112345799999999999764 568899999999999999999999999


Q ss_pred             CChHHHHHHHHhCCCCC-----------------------C------CCCCCcHHHHHHHHHccccCccCcCCChhcHHH
Q 001902          897 KTRQKTFANILHKDLKF-----------------------P------SSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANE  947 (998)
Q Consensus       897 ~~~~~~~~~i~~~~~~~-----------------------~------~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~e  947 (998)
                      .+....+..+.......                       .      .....++.+.+||.+||..||.+|||    +.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~t----a~e  297 (346)
T d1cm8a_         222 SDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVT----AGE  297 (346)
T ss_dssp             SSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCC----HHH
T ss_pred             CChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcC----HHH
Confidence            88776665544311110                       0      11346889999999999999999999    999


Q ss_pred             HHcCCCccCCChh
Q 001902          948 IKKHPFFKGVNWA  960 (998)
Q Consensus       948 lL~Hp~f~~~~~~  960 (998)
                      +|+||||+.+...
T Consensus       298 iL~Hp~f~~~~~~  310 (346)
T d1cm8a_         298 ALAHPYFESLHDT  310 (346)
T ss_dssp             HHHSGGGTTTC--
T ss_pred             HhcChhhCcCCCc
Confidence            9999999987543


No 33 
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.4e-46  Score=411.06  Aligned_cols=263  Identities=21%  Similarity=0.277  Sum_probs=218.2

Q ss_pred             ccCCcccccc-cCCCCceeEEEEEEcc--CCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCe
Q 001902          663 NLQHFRPIKP-LGSGDTGSVHLVELCG--SGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTH  739 (998)
Q Consensus       663 ~~~~y~~~~~-LG~G~~g~Vy~a~~~~--~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~  739 (998)
                      ..++|.+... ||+|+||.||+|.++.  ++..||||+++...  .......+.+|+++|++++|||||++++++.. +.
T Consensus         6 ~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~   82 (285)
T d1u59a_           6 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EA   82 (285)
T ss_dssp             CGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SS
T ss_pred             cccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhc--CHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-Ce
Confidence            3456777774 9999999999998753  45689999997542  44556788999999999999999999999865 46


Q ss_pred             EEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCC
Q 001902          740 VCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSC  819 (998)
Q Consensus       740 ~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~  819 (998)
                      +|||||||++|+|.+++... ...+++..+..++.||+.||+|||++|||||||||+|||++.++.+||+|||+|+....
T Consensus        83 ~~lvmE~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~  161 (285)
T d1u59a_          83 LMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGA  161 (285)
T ss_dssp             EEEEEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred             EEEEEEeCCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhcccc
Confidence            89999999999999998654 34699999999999999999999999999999999999999999999999999976542


Q ss_pred             CCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHc-CCCCCCCCC
Q 001902          820 KPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLY-GYTPFRGKT  898 (998)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLlt-G~~Pf~~~~  898 (998)
                      ....                        ........||+.|||||++.+..++.++|||||||++|||+| |..||.+.+
T Consensus       162 ~~~~------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~  217 (285)
T d1u59a_         162 DDSY------------------------YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK  217 (285)
T ss_dssp             CSCE------------------------ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             cccc------------------------cccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCC
Confidence            2111                        112234568999999999999999999999999999999997 999999988


Q ss_pred             hHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCcc
Q 001902          899 RQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFK  955 (998)
Q Consensus       899 ~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~  955 (998)
                      ..+.+..+..+.. .+....++.++.+||.+||..||++|||+.+ +.+.|+|+|+.
T Consensus       218 ~~~~~~~i~~~~~-~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~-i~~~L~~~~~~  272 (285)
T d1u59a_         218 GPEVMAFIEQGKR-MECPPECPPELYALMSDCWIYKWEDRPDFLT-VEQRMRACYYS  272 (285)
T ss_dssp             THHHHHHHHTTCC-CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC-CCCCCcCCHHHHHHHHHHcCCCHhHCcCHHH-HHHHHHHHHHH
Confidence            8777777766532 2333567899999999999999999999655 34557888764


No 34 
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.7e-46  Score=406.30  Aligned_cols=253  Identities=22%  Similarity=0.364  Sum_probs=207.8

Q ss_pred             cccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEE
Q 001902          662 INLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVC  741 (998)
Q Consensus       662 ~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~  741 (998)
                      |+.++|++++.||+|+||.||+|.+. ++..||||+++....    ..+.+.+|+.++++++||||+++++++...+.+|
T Consensus         2 idp~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~   76 (263)
T d1sm2a_           2 IDPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC   76 (263)
T ss_dssp             BCCSCEEEEEEEECCSSCCEEEEEET-TTEEEEEEECCSSSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             CChHHcEEEEEEeeCCCeEEEEEEEC-CCCEEEEEEECCCcC----cHHHHHHHHHHHHhcCCCCcccccceeccCCceE
Confidence            34568999999999999999999985 578899999976432    2356889999999999999999999999999999


Q ss_pred             EEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCC
Q 001902          742 LITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKP  821 (998)
Q Consensus       742 lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~  821 (998)
                      +|||||++|+|.+++... ...+++..+..++.||+.||+|||+++|+||||||+|||++.++.+||+|||+|+......
T Consensus        77 lv~E~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~  155 (263)
T d1sm2a_          77 LVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ  155 (263)
T ss_dssp             EEEECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC---------
T ss_pred             EEEEecCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCC
Confidence            999999999999998765 3458999999999999999999999999999999999999999999999999996543111


Q ss_pred             CCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHc-CCCCCCCCChH
Q 001902          822 QLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLY-GYTPFRGKTRQ  900 (998)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLlt-G~~Pf~~~~~~  900 (998)
                      .                          .......||+.|+|||++.+..++.++|||||||++|||+| |.+||...+..
T Consensus       156 ~--------------------------~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~  209 (263)
T d1sm2a_         156 Y--------------------------TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS  209 (263)
T ss_dssp             -----------------------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHH
T ss_pred             c--------------------------eeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHH
Confidence            0                          11223568999999999999999999999999999999998 67777777777


Q ss_pred             HHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcC
Q 001902          901 KTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKH  951 (998)
Q Consensus       901 ~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~H  951 (998)
                      ..+..+..+. ..+....++.++.+|+.+||+.||.+|||    +++|++|
T Consensus       210 ~~~~~i~~~~-~~~~p~~~~~~l~~li~~cl~~~p~~Rps----~~~il~~  255 (263)
T d1sm2a_         210 EVVEDISTGF-RLYKPRLASTHVYQIMNHCWKERPEDRPA----FSRLLRQ  255 (263)
T ss_dssp             HHHHHHHHTC-CCCCCTTSCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHHhcC-CCCCccccCHHHHHHHHHHccCCHhHCcC----HHHHHHH
Confidence            7777776653 23334456889999999999999999999    7777765


No 35 
>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=1.7e-46  Score=413.59  Aligned_cols=258  Identities=23%  Similarity=0.317  Sum_probs=207.3

Q ss_pred             ccccCCcccccccCCCCceeEEEEEEccCCe---EEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeC
Q 001902          661 QINLQHFRPIKPLGSGDTGSVHLVELCGSGQ---YFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTK  737 (998)
Q Consensus       661 ~~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~---~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~  737 (998)
                      .+..+.|++.+.||+|+||+||+|.++.+++   .||+|.+....  .....+.+.+|+.+|++++|||||++++++...
T Consensus        22 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~   99 (299)
T d1jpaa_          22 EIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY--TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKS   99 (299)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred             hhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECccc--CHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeC
Confidence            4556789999999999999999999976654   58888876532  344567889999999999999999999999999


Q ss_pred             CeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCcccc
Q 001902          738 THVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLT  817 (998)
Q Consensus       738 ~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~  817 (998)
                      +.+|+|||||++|+|.+++... ...+++..+..++.||+.||.|||++|||||||||+|||++.++.+||+|||+|+..
T Consensus       100 ~~~~iv~Ey~~~g~L~~~~~~~-~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~  178 (299)
T d1jpaa_         100 TPVMIITEFMENGSLDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFL  178 (299)
T ss_dssp             SSCEEEEECCTTEEHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             CEEEEEEEecCCCcceeeeccc-cCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEc
Confidence            9999999999999999988765 345999999999999999999999999999999999999999999999999999664


Q ss_pred             CCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHc-CCCCCCC
Q 001902          818 SCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLY-GYTPFRG  896 (998)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLlt-G~~Pf~~  896 (998)
                      ......                      ..........||+.|||||++.+..++.++|||||||++|||+| |.+||.+
T Consensus       179 ~~~~~~----------------------~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~  236 (299)
T d1jpaa_         179 EDDTSD----------------------PTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWD  236 (299)
T ss_dssp             ---------------------------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             cCCCCc----------------------ceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCC
Confidence            321110                      00011223468999999999999999999999999999999997 8999999


Q ss_pred             CChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhc
Q 001902          897 KTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEG  944 (998)
Q Consensus       897 ~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~  944 (998)
                      .+..+.+..+..+ ...+....++..+.+||.+||+.||.+|||+.++
T Consensus       237 ~~~~~~~~~i~~~-~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei  283 (299)
T d1jpaa_         237 MTNQDVINAIEQD-YRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQI  283 (299)
T ss_dssp             CCHHHHHHHHHTT-CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             CCHHHHHHHHHcC-CCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHH
Confidence            9888877777654 3344455688999999999999999999995544


No 36 
>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4.2e-46  Score=401.46  Aligned_cols=252  Identities=23%  Similarity=0.337  Sum_probs=217.9

Q ss_pred             ccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEE
Q 001902          663 NLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCL  742 (998)
Q Consensus       663 ~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~l  742 (998)
                      +.++|++++.||+|+||.||+|++ .+++.||||.+++...    ..+.+.+|+.++++++||||+++++++.+.+.+++
T Consensus         2 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~~~~vAvK~l~~~~~----~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~i   76 (258)
T d1k2pa_           2 DPKDLTFLKELGTGQFGVVKYGKW-RGQYDVAIKMIKEGSM----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFI   76 (258)
T ss_dssp             CCCCCCCCCCCCEETTEEEEEEEE-TTTEEEEEEEEESSSS----CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEE
T ss_pred             ChHHCEEeEEEecCCCeEEEEEEE-CCCCEEEEEEECcCcC----CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEE
Confidence            457899999999999999999998 4788999999986533    23568899999999999999999999999999999


Q ss_pred             EEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCC
Q 001902          743 ITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQ  822 (998)
Q Consensus       743 V~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~  822 (998)
                      ||||+++|+|..++.... ..+++..+..++.||++||+|||++||+||||||+|||++.++.+||+|||+|....... 
T Consensus        77 v~Ey~~~g~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~-  154 (258)
T d1k2pa_          77 ITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-  154 (258)
T ss_dssp             EEECCTTEEHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSS-
T ss_pred             EEEccCCCcHHHhhhccc-cCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCC-
Confidence            999999999999876542 458999999999999999999999999999999999999999999999999996543111 


Q ss_pred             CCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHc-CCCCCCCCChHH
Q 001902          823 LLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLY-GYTPFRGKTRQK  901 (998)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLlt-G~~Pf~~~~~~~  901 (998)
                                               ........||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.+..+
T Consensus       155 -------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~  209 (258)
T d1k2pa_         155 -------------------------YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE  209 (258)
T ss_dssp             -------------------------CCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH
T ss_pred             -------------------------ceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHH
Confidence                                     111233579999999999999999999999999999999998 899999999888


Q ss_pred             HHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcC
Q 001902          902 TFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKH  951 (998)
Q Consensus       902 ~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~H  951 (998)
                      ....+..+. ..+.....+.++.+||.+||+.||++|||    +.+|++|
T Consensus       210 ~~~~i~~~~-~~~~p~~~~~~l~~li~~cl~~dP~~RPt----~~eil~~  254 (258)
T d1k2pa_         210 TAEHIAQGL-RLYRPHLASEKVYTIMYSCWHEKADERPT----FKILLSN  254 (258)
T ss_dssp             HHHHHHTTC-CCCCCTTCCHHHHHHHHHTTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHhCC-CCCCcccccHHHHHHHHHHccCCHhHCcC----HHHHHHH
Confidence            888777653 33444567889999999999999999999    6666665


No 37 
>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}
Probab=100.00  E-value=2.2e-46  Score=410.95  Aligned_cols=258  Identities=23%  Similarity=0.372  Sum_probs=214.6

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLI  743 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV  743 (998)
                      +++|+++++||+|+||+||+|+++ +|+.||||++..... .......+.+|+.+|++++||||+++++++...+..|++
T Consensus         1 ~~~Y~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~   78 (286)
T d1ob3a_           1 MEKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKE-DEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLV   78 (286)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEET-TSCEEEEEEECCSSG-GGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEE
T ss_pred             CCCceeccEEecCCCcEEEEEEeC-CCCEEEEEEEehhhc-ChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEE
Confidence            368999999999999999999985 789999999976533 333457788999999999999999999999999999999


Q ss_pred             EecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCC
Q 001902          744 TDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQL  823 (998)
Q Consensus       744 ~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~  823 (998)
                      |||+.++.+..+....  +.+++..++.++.||+.||+|||++|||||||||+|||++.++.+||+|||.|......   
T Consensus        79 ~e~~~~~~~~~~~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~---  153 (286)
T d1ob3a_          79 FEHLDQDLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP---  153 (286)
T ss_dssp             EECCSEEHHHHHHTST--TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred             EEeehhhhHHHHHhhc--CCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccC---
Confidence            9999777776666543  56999999999999999999999999999999999999999999999999998654311   


Q ss_pred             CCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcC-CCCCChhHHHHHHHHHHHHHcCCCCCCCCChHHH
Q 001902          824 LLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAG-AGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKT  902 (998)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~~~  902 (998)
                                              ........|++.|+|||.+.+ ..++.++|||||||++|+|++|++||.+.+....
T Consensus       154 ------------------------~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~  209 (286)
T d1ob3a_         154 ------------------------VRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQ  209 (286)
T ss_dssp             --------------------------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             ------------------------ccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHH
Confidence                                    112234468999999999976 4568999999999999999999999999888777


Q ss_pred             HHHHHhCCCC------------------CC---------CCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCcc
Q 001902          903 FANILHKDLK------------------FP---------SSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFK  955 (998)
Q Consensus       903 ~~~i~~~~~~------------------~~---------~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~  955 (998)
                      +.++......                  +.         .....+..+.+||.+||..||++|||    +.|+|+||||+
T Consensus       210 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s----~~ell~Hp~f~  285 (286)
T d1ob3a_         210 LMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRIT----AKQALEHAYFK  285 (286)
T ss_dssp             HHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCC----HHHHHTSGGGG
T ss_pred             HHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcC----HHHHhcCcccC
Confidence            7766531000                  00         11345788999999999999999999    99999999998


Q ss_pred             C
Q 001902          956 G  956 (998)
Q Consensus       956 ~  956 (998)
                      .
T Consensus       286 ~  286 (286)
T d1ob3a_         286 E  286 (286)
T ss_dssp             C
T ss_pred             c
Confidence            4


No 38 
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.2e-46  Score=406.92  Aligned_cols=256  Identities=21%  Similarity=0.292  Sum_probs=209.1

Q ss_pred             cccCCCCceeEEEEEEc--cCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEEEecCC
Q 001902          671 KPLGSGDTGSVHLVELC--GSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLITDYCP  748 (998)
Q Consensus       671 ~~LG~G~~g~Vy~a~~~--~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV~E~~~  748 (998)
                      ++||+|+||.||+|.+.  .+++.||||+++... .+....+.+.+|+.+|++++|||||++++++.. +..|||||||+
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~   90 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAE   90 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhh-CCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCC
Confidence            46999999999999864  456889999997653 344556789999999999999999999999865 45789999999


Q ss_pred             CCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCCCCCcc
Q 001902          749 GGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQLLLPTT  828 (998)
Q Consensus       749 ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~~~~~~  828 (998)
                      +|+|.+++...  ..+++..+..++.||+.||+|||++|||||||||+|||++.++.+||+|||+|+.......      
T Consensus        91 ~g~L~~~l~~~--~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~------  162 (277)
T d1xbba_          91 LGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN------  162 (277)
T ss_dssp             TEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCS------
T ss_pred             CCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhcccccc------
Confidence            99999999875  4599999999999999999999999999999999999999999999999999965431111      


Q ss_pred             hhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHc-CCCCCCCCChHHHHHHHH
Q 001902          829 NEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLY-GYTPFRGKTRQKTFANIL  907 (998)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLlt-G~~Pf~~~~~~~~~~~i~  907 (998)
                                        .........||+.|||||++.+..++.++|||||||++|||++ |.+||.+.+..+....+.
T Consensus       163 ------------------~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~  224 (277)
T d1xbba_         163 ------------------YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLE  224 (277)
T ss_dssp             ------------------EEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHH
T ss_pred             ------------------ccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHH
Confidence                              0112234579999999999999999999999999999999997 999999988887777666


Q ss_pred             hCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccC
Q 001902          908 HKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKG  956 (998)
Q Consensus       908 ~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~  956 (998)
                      .+. ..+....++.++.+||.+||+.||.+|||+.++ .+.|+|+|+.-
T Consensus       225 ~~~-~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i-~~~L~~~~~~~  271 (277)
T d1xbba_         225 KGE-RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAV-ELRLRNYYYDV  271 (277)
T ss_dssp             TTC-CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHH-HHHHHHHHHHH
T ss_pred             cCC-CCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHH-HHHhhCHHhhc
Confidence            543 233345678999999999999999999994442 33467777653


No 39 
>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=6.9e-46  Score=405.32  Aligned_cols=261  Identities=22%  Similarity=0.342  Sum_probs=214.0

Q ss_pred             cccccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCe
Q 001902          660 EQINLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTH  739 (998)
Q Consensus       660 ~~~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~  739 (998)
                      +.+..++|++.+.||+|+||.||+|.+.. ++.||||+++....    ..+.+.+|+.++++++|||||++++++.+ +.
T Consensus        12 ~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~-~~~vAiK~l~~~~~----~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~~   85 (285)
T d1fmka3          12 WEIPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP   85 (285)
T ss_dssp             SBCCGGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEECCTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS
T ss_pred             eEcCHHHEEEeeEEeeCCCeEEEEEEECC-CCEEEEEEECcccC----CHHHHHHHHHHHHhcccCCEeEEEEEEec-CC
Confidence            44666899999999999999999999865 46799999975432    23578899999999999999999999855 55


Q ss_pred             EEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCC
Q 001902          740 VCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSC  819 (998)
Q Consensus       740 ~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~  819 (998)
                      +++|||||++|+|..++.......+++..+..++.||+.||+|||++||+||||||+||||+.++.+||+|||+|+....
T Consensus        86 ~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~  165 (285)
T d1fmka3          86 IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIED  165 (285)
T ss_dssp             CEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC----
T ss_pred             eEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccC
Confidence            78999999999999998765445699999999999999999999999999999999999999999999999999965431


Q ss_pred             CCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcC-CCCCCCCC
Q 001902          820 KPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYG-YTPFRGKT  898 (998)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG-~~Pf~~~~  898 (998)
                      ..                          ........||+.|+|||++....++.++|||||||++|||++| .+||.+..
T Consensus       166 ~~--------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~  219 (285)
T d1fmka3         166 NE--------------------------YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV  219 (285)
T ss_dssp             ------------------------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             CC--------------------------ceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCC
Confidence            11                          0112345699999999999999999999999999999999995 55556666


Q ss_pred             hHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHc--CCCccCC
Q 001902          899 RQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKK--HPFFKGV  957 (998)
Q Consensus       899 ~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~--Hp~f~~~  957 (998)
                      ..+.+..+..+ ...+....++.++++||.+||+.||++||+    +.+|++  |+||+..
T Consensus       220 ~~~~~~~i~~~-~~~~~~~~~~~~l~~li~~cl~~dP~~Rps----~~~i~~~L~~~~~~~  275 (285)
T d1fmka3         220 NREVLDQVERG-YRMPCPPECPESLHDLMCQCWRKEPEERPT----FEYLQAFLEDYFTST  275 (285)
T ss_dssp             HHHHHHHHHTT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSCC----HHHHHHHHHTTTSCS
T ss_pred             HHHHHHHHHhc-CCCCCCcccCHHHHHHHHHHcccCHhHCcC----HHHHHHHHhhhhcCC
Confidence            66666655543 344555668899999999999999999999    888877  8888764


No 40 
>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}
Probab=100.00  E-value=2e-45  Score=411.39  Aligned_cols=254  Identities=24%  Similarity=0.373  Sum_probs=209.9

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCC-CCCccceeEEEee--CCeE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLD-HPFVPALYASFQT--KTHV  740 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~-h~nIv~l~~~~~~--~~~~  740 (998)
                      .++|++++.||+|+||+||+|+++.+|+.||||++++.      ....+.+|+.+|+.+. ||||++++++|..  ...+
T Consensus        34 ~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~------~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~  107 (328)
T d3bqca1          34 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV------KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  107 (328)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSE
T ss_pred             CcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH------HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCce
Confidence            46899999999999999999999999999999998754      2356788999999995 9999999999974  4679


Q ss_pred             EEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCC-cEEEEeccCccccCC
Q 001902          741 CLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNG-HVSLTDFDLSCLTSC  819 (998)
Q Consensus       741 ~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g-~vkL~DFG~a~~~~~  819 (998)
                      |+|||||.+++|..+.     ..+++..++.++.||+.||+|||++|||||||||+||||+.++ .+||+|||+|.....
T Consensus       108 ~~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~  182 (328)
T d3bqca1         108 ALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP  182 (328)
T ss_dssp             EEEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCT
T ss_pred             eEEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccC
Confidence            9999999999998764     3499999999999999999999999999999999999999655 699999999865321


Q ss_pred             CCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCC-CCCChhHHHHHHHHHHHHHcCCCCCCCCC
Q 001902          820 KPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGA-GHTSAVDWWALGILLYEMLYGYTPFRGKT  898 (998)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDIwSlG~il~eLltG~~Pf~~~~  898 (998)
                      .                            ......+||+.|+|||.+.+. .++.++|||||||++|+|++|..||....
T Consensus       183 ~----------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~  234 (328)
T d3bqca1         183 G----------------------------QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH  234 (328)
T ss_dssp             T----------------------------CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred             C----------------------------CcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCc
Confidence            1                            122345799999999998775 47899999999999999999999997654


Q ss_pred             hH-HHHHHHHh-------------CCC----------------------CCCCCCCCcHHHHHHHHHccccCccCcCCCh
Q 001902          899 RQ-KTFANILH-------------KDL----------------------KFPSSTPTSLHAKQLMYRLLHRDPKSRLGSH  942 (998)
Q Consensus       899 ~~-~~~~~i~~-------------~~~----------------------~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~  942 (998)
                      .. .....+..             ...                      ..+....++.++.+||.+||+.||.+|||  
T Consensus       235 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~t--  312 (328)
T d3bqca1         235 DNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLT--  312 (328)
T ss_dssp             SHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCC--
T ss_pred             hhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcC--
Confidence            32 22222211             000                      01112336788999999999999999999  


Q ss_pred             hcHHHHHcCCCccCCChh
Q 001902          943 EGANEIKKHPFFKGVNWA  960 (998)
Q Consensus       943 ~~a~elL~Hp~f~~~~~~  960 (998)
                        ++++|+||||+.+.|.
T Consensus       313 --a~e~L~Hp~F~~v~~~  328 (328)
T d3bqca1         313 --AREAMEHPYFYTVVKD  328 (328)
T ss_dssp             --HHHHHTSGGGTTSCCC
T ss_pred             --HHHHhcCcccCCCCCC
Confidence              9999999999998873


No 41 
>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=5.5e-45  Score=398.77  Aligned_cols=256  Identities=21%  Similarity=0.270  Sum_probs=205.7

Q ss_pred             ccccCCcccccccCCCCceeEEEEEEccCC----eEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEee
Q 001902          661 QINLQHFRPIKPLGSGDTGSVHLVELCGSG----QYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQT  736 (998)
Q Consensus       661 ~~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~----~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~  736 (998)
                      ++..+.|++.+.||+|+||.||+|.+..++    ..||||.+....  .......+.+|+.++++++|||||++++++..
T Consensus         3 ei~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~   80 (283)
T d1mqba_           3 EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK   80 (283)
T ss_dssp             BCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             cCCHHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECccc--ChHHHHHHHHHHHHHHhcCCCCEeeeeEEEec
Confidence            355678999999999999999999987654    479999987542  33445678899999999999999999999999


Q ss_pred             CCeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccc
Q 001902          737 KTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCL  816 (998)
Q Consensus       737 ~~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~  816 (998)
                      .+..++|||||.++++.+++... ...+++..+..++.||+.||.|||+++|+||||||+||||+.++.+||+|||+|+.
T Consensus        81 ~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~  159 (283)
T d1mqba_          81 YKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRV  159 (283)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             CCceEEEEEecccCcchhhhhcc-cccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhc
Confidence            99999999999999999988765 35699999999999999999999999999999999999999999999999999966


Q ss_pred             cCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcC-CCCCC
Q 001902          817 TSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYG-YTPFR  895 (998)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG-~~Pf~  895 (998)
                      .......                        ........||+.|||||++.+..++.++|||||||++|||++| .+||.
T Consensus       160 ~~~~~~~------------------------~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~  215 (283)
T d1mqba_         160 LEDDPEA------------------------TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYW  215 (283)
T ss_dssp             --------------------------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             ccCCCcc------------------------ceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccc
Confidence            4321110                        1122344689999999999999999999999999999999985 55555


Q ss_pred             CCChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhc
Q 001902          896 GKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEG  944 (998)
Q Consensus       896 ~~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~  944 (998)
                      +.+....+..+.. ....+....++..+.+||.+||..||++|||+.++
T Consensus       216 ~~~~~~~~~~i~~-~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~ei  263 (283)
T d1mqba_         216 ELSNHEVMKAIND-GFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADI  263 (283)
T ss_dssp             TCCHHHHHHHHHT-TCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             cCCHHHHHHHHhc-cCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHH
Confidence            5565555555544 34445555688999999999999999999994443


No 42 
>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.8e-45  Score=411.78  Aligned_cols=259  Identities=25%  Similarity=0.387  Sum_probs=210.6

Q ss_pred             CCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCC-----e
Q 001902          665 QHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKT-----H  739 (998)
Q Consensus       665 ~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~-----~  739 (998)
                      ++|++++.||+|+||+||+|.+..+|+.||||++.+..  .....+.+.+|+.+|++++||||+++++++....     .
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~   85 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD   85 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT--CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc--ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccce
Confidence            57999999999999999999999999999999997532  3445677889999999999999999999987543     3


Q ss_pred             EEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCC
Q 001902          740 VCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSC  819 (998)
Q Consensus       740 ~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~  819 (998)
                      +|++| |+.+++|.+++...   .+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|.....
T Consensus        86 ~~l~~-~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~  161 (345)
T d1pmea_          86 VYLVT-HLMGADLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADP  161 (345)
T ss_dssp             EEEEE-ECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred             EEEEE-eecCCchhhhhhcC---CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccC
Confidence            55554 55699999999764   499999999999999999999999999999999999999999999999999965431


Q ss_pred             CCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcC-CCCCChhHHHHHHHHHHHHHcCCCCCCCCC
Q 001902          820 KPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAG-AGHTSAVDWWALGILLYEMLYGYTPFRGKT  898 (998)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~sDIwSlG~il~eLltG~~Pf~~~~  898 (998)
                      ...                        ........+||+.|+|||++.. ..++.++||||+||++|+|++|..||.+.+
T Consensus       162 ~~~------------------------~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~  217 (345)
T d1pmea_         162 DHD------------------------HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH  217 (345)
T ss_dssp             GGC------------------------BCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             CCc------------------------cceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCC
Confidence            110                        0112345679999999999844 567889999999999999999999999887


Q ss_pred             hHHHHHHHHhCC----------------------CCCC-------CCCCCcHHHHHHHHHccccCccCcCCChhcHHHHH
Q 001902          899 RQKTFANILHKD----------------------LKFP-------SSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIK  949 (998)
Q Consensus       899 ~~~~~~~i~~~~----------------------~~~~-------~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL  949 (998)
                      ............                      .+..       .....|.++++||.+||..||.+|||    +.++|
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t----a~e~L  293 (345)
T d1pmea_         218 YLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIE----VEQAL  293 (345)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCC----HHHHH
T ss_pred             HHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcC----HHHHh
Confidence            765555443210                      0000       11345778999999999999999999    99999


Q ss_pred             cCCCccCC
Q 001902          950 KHPFFKGV  957 (998)
Q Consensus       950 ~Hp~f~~~  957 (998)
                      +||||+..
T Consensus       294 ~hpf~~~~  301 (345)
T d1pmea_         294 AHPYLEQY  301 (345)
T ss_dssp             TSGGGTTT
T ss_pred             cCHhhccC
Confidence            99999965


No 43 
>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.3e-45  Score=409.04  Aligned_cols=263  Identities=25%  Similarity=0.320  Sum_probs=211.7

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEee-------
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQT-------  736 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~-------  736 (998)
                      .++|++++.||+|+||+||+|.+..+|+.||||++..... .......+.+|+.+|++++||||+++++++..       
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~   87 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENE-KEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   87 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----C-TTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhc-chHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccc
Confidence            4699999999999999999999999999999999876533 23345677899999999999999999998854       


Q ss_pred             -CCeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCcc
Q 001902          737 -KTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSC  815 (998)
Q Consensus       737 -~~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~  815 (998)
                       .+.+|+|||||.++.+..+...  ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus        88 ~~~~~~iv~e~~~~~~~~~~~~~--~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~  165 (318)
T d3blha1          88 CKGSIYLVFDFCEHDLAGLLSNV--LVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR  165 (318)
T ss_dssp             ---CEEEEEECCCEEHHHHHTCT--TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             cCceEEEEEeccCCCccchhhhc--ccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceee
Confidence             4568999999977666554433  3569999999999999999999999999999999999999999999999999996


Q ss_pred             ccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCC-CCCChhHHHHHHHHHHHHHcCCCCC
Q 001902          816 LTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGA-GHTSAVDWWALGILLYEMLYGYTPF  894 (998)
Q Consensus       816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDIwSlG~il~eLltG~~Pf  894 (998)
                      .......                       .........+||+.|+|||++.+. .+++++|||||||++|+|++|++||
T Consensus       166 ~~~~~~~-----------------------~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf  222 (318)
T d3blha1         166 AFSLAKN-----------------------SQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM  222 (318)
T ss_dssp             ECCC----------------------------CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ecccccc-----------------------cccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCC
Confidence            5432111                       011223346799999999999765 6899999999999999999999999


Q ss_pred             CCCChHHHHHHHHhCCCCCCCC------------------------------CCCcHHHHHHHHHccccCccCcCCChhc
Q 001902          895 RGKTRQKTFANILHKDLKFPSS------------------------------TPTSLHAKQLMYRLLHRDPKSRLGSHEG  944 (998)
Q Consensus       895 ~~~~~~~~~~~i~~~~~~~~~~------------------------------~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~  944 (998)
                      .+.+.......+......++..                              ...+..+.+||.+||..||++|||    
T Consensus       223 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~s----  298 (318)
T d3blha1         223 QGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRID----  298 (318)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCC----
T ss_pred             CCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcC----
Confidence            9988877766655421111100                              012567789999999999999999    


Q ss_pred             HHHHHcCCCccC
Q 001902          945 ANEIKKHPFFKG  956 (998)
Q Consensus       945 a~elL~Hp~f~~  956 (998)
                      +.++|+||||+.
T Consensus       299 a~elL~Hpff~~  310 (318)
T d3blha1         299 SDDALNHDFFWS  310 (318)
T ss_dssp             HHHHHHSGGGSS
T ss_pred             HHHHHcChhhcc
Confidence            999999999985


No 44 
>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.9e-45  Score=412.45  Aligned_cols=255  Identities=29%  Similarity=0.444  Sum_probs=210.2

Q ss_pred             CcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEee------CCe
Q 001902          666 HFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQT------KTH  739 (998)
Q Consensus       666 ~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~------~~~  739 (998)
                      +|+.++.||+|+||+||+|++..+|+.||||++.....       ...+|+.+|++++||||++++++|..      ..+
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~-------~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~   93 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVY   93 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-------SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch-------HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceE
Confidence            69999999999999999999999999999999976532       22369999999999999999999853      346


Q ss_pred             EEEEEecCCCCchhHHHhh-CCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCC-cEEEEeccCcccc
Q 001902          740 VCLITDYCPGGELFLLLDR-QPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNG-HVSLTDFDLSCLT  817 (998)
Q Consensus       740 ~~lV~E~~~ggsL~~~l~~-~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g-~vkL~DFG~a~~~  817 (998)
                      +|||||||+++.+..+... .....+++..++.++.||+.||+|||++||+||||||+|||++.++ .+||+|||++...
T Consensus        94 ~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~  173 (350)
T d1q5ka_          94 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL  173 (350)
T ss_dssp             EEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEEC
T ss_pred             EEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhc
Confidence            8999999976544443321 2345699999999999999999999999999999999999999775 8999999998654


Q ss_pred             CCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcC-CCCCChhHHHHHHHHHHHHHcCCCCCCC
Q 001902          818 SCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAG-AGHTSAVDWWALGILLYEMLYGYTPFRG  896 (998)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~sDIwSlG~il~eLltG~~Pf~~  896 (998)
                      ...                            ......+||+.|+|||.+.+ ..++.++|||||||++|+|++|.+||.+
T Consensus       174 ~~~----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~  225 (350)
T d1q5ka_         174 VRG----------------------------EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPG  225 (350)
T ss_dssp             CTT----------------------------SCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             cCC----------------------------cccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCC
Confidence            211                            12234579999999999875 5689999999999999999999999999


Q ss_pred             CChHHHHHHHHhC-----------------CCCCCC----------CCCCcHHHHHHHHHccccCccCcCCChhcHHHHH
Q 001902          897 KTRQKTFANILHK-----------------DLKFPS----------STPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIK  949 (998)
Q Consensus       897 ~~~~~~~~~i~~~-----------------~~~~~~----------~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL  949 (998)
                      .+....+..+...                 ...++.          ....++++.+||.+||..||.+|||    +.|+|
T Consensus       226 ~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t----a~e~L  301 (350)
T d1q5ka_         226 DSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLT----PLEAC  301 (350)
T ss_dssp             SSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCC----HHHHH
T ss_pred             CCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcC----HHHHh
Confidence            8887777766531                 111111          2346789999999999999999999    99999


Q ss_pred             cCCCccCCCh
Q 001902          950 KHPFFKGVNW  959 (998)
Q Consensus       950 ~Hp~f~~~~~  959 (998)
                      +||||+.+..
T Consensus       302 ~Hp~f~~~~~  311 (350)
T d1q5ka_         302 AHSFFDELRD  311 (350)
T ss_dssp             TSGGGGGGGC
T ss_pred             cCHhhccccC
Confidence            9999987643


No 45 
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.8e-45  Score=399.14  Aligned_cols=256  Identities=25%  Similarity=0.359  Sum_probs=209.3

Q ss_pred             ccccCCcccccccCCCCceeEEEEEEccC---CeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeC
Q 001902          661 QINLQHFRPIKPLGSGDTGSVHLVELCGS---GQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTK  737 (998)
Q Consensus       661 ~~~~~~y~~~~~LG~G~~g~Vy~a~~~~~---~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~  737 (998)
                      ++..++|++.+.||+|+||.||+|.+..+   +..||+|.++..  ........+.+|+.++++++||||+++++++. +
T Consensus         3 ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~   79 (273)
T d1mp8a_           3 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC--TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-E   79 (273)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT--TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-S
T ss_pred             CcCHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccc--cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-c
Confidence            45667899999999999999999998654   457888887643  34555678899999999999999999999986 4


Q ss_pred             CeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCcccc
Q 001902          738 THVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLT  817 (998)
Q Consensus       738 ~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~  817 (998)
                      +.+|+|||||++|+|.+++.... ..+++..++.++.||+.||.|||++|||||||||+|||++.++.+||+|||+|+..
T Consensus        80 ~~~~iv~E~~~~g~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~  158 (273)
T d1mp8a_          80 NPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM  158 (273)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-------
T ss_pred             CeEEEEEEeccCCcHHhhhhccC-CCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheec
Confidence            67899999999999999887653 46999999999999999999999999999999999999999999999999999654


Q ss_pred             CCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHc-CCCCCCC
Q 001902          818 SCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLY-GYTPFRG  896 (998)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLlt-G~~Pf~~  896 (998)
                      ....                          ........||+.|+|||++.+..++.++|||||||++|||++ |.+||.+
T Consensus       159 ~~~~--------------------------~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~  212 (273)
T d1mp8a_         159 EDST--------------------------YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG  212 (273)
T ss_dssp             --------------------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             cCCc--------------------------ceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCC
Confidence            3111                          112234568999999999999999999999999999999997 9999999


Q ss_pred             CChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcC
Q 001902          897 KTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKH  951 (998)
Q Consensus       897 ~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~H  951 (998)
                      .+..+.+..+..+.. .+....++..+.+||.+||..||.+|||    +.+|++|
T Consensus       213 ~~~~~~~~~i~~~~~-~~~~~~~~~~~~~li~~cl~~dp~~Rps----~~ei~~~  262 (273)
T d1mp8a_         213 VKNNDVIGRIENGER-LPMPPNCPPTLYSLMTKCWAYDPSRRPR----FTELKAQ  262 (273)
T ss_dssp             CCGGGHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-CCCCCCCCHHHHHHHHHHcCCCHhHCcC----HHHHHHH
Confidence            988888888776542 3444568899999999999999999999    7777765


No 46 
>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.3e-45  Score=415.17  Aligned_cols=263  Identities=23%  Similarity=0.411  Sum_probs=209.3

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEee------C
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQT------K  737 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~------~  737 (998)
                      .++|++++.||+|+||+||+|+++.+|+.||||++.+... .......+.+|+.++++++||||++++++|..      .
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~-~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~   94 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF   94 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhc-CHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccC
Confidence            3689999999999999999999999999999999987543 45566778899999999999999999999963      4


Q ss_pred             CeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCcccc
Q 001902          738 THVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLT  817 (998)
Q Consensus       738 ~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~  817 (998)
                      .++|+|||||.++ +.+.+.    ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+|++|||++...
T Consensus        95 ~~~~iv~Ey~~~~-l~~~~~----~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~  169 (355)
T d2b1pa1          95 QDVYLVMELMDAN-LCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  169 (355)
T ss_dssp             CEEEEEEECCSEE-HHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             ceeEEEEeccchH-HHHhhh----cCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhcc
Confidence            7899999999655 444443    24899999999999999999999999999999999999999999999999988543


Q ss_pred             CCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCC
Q 001902          818 SCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGK  897 (998)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~  897 (998)
                      ..                            .......+||+.|+|||++.+..+++++||||+||++|+|++|++||.+.
T Consensus       170 ~~----------------------------~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~  221 (355)
T d2b1pa1         170 GT----------------------------SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  221 (355)
T ss_dssp             ---------------------------------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cc----------------------------ccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCC
Confidence            21                            11223557999999999999999999999999999999999999999988


Q ss_pred             ChHHHHHHHHhC----------------------CCCCCCC------------------CCCcHHHHHHHHHccccCccC
Q 001902          898 TRQKTFANILHK----------------------DLKFPSS------------------TPTSLHAKQLMYRLLHRDPKS  937 (998)
Q Consensus       898 ~~~~~~~~i~~~----------------------~~~~~~~------------------~~~s~~l~~Ll~~~L~~dP~~  937 (998)
                      +.......++..                      .......                  ...|.++.+||.+||..||++
T Consensus       222 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~  301 (355)
T d2b1pa1         222 DYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAK  301 (355)
T ss_dssp             SHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTT
T ss_pred             CHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhH
Confidence            877666655431                      1110000                  012557899999999999999


Q ss_pred             cCCChhcHHHHHcCCCccCCChhhhhc
Q 001902          938 RLGSHEGANEIKKHPFFKGVNWALVRC  964 (998)
Q Consensus       938 Rpt~~~~a~elL~Hp~f~~~~~~~~~~  964 (998)
                      |||    |+++|+||||+..-+.....
T Consensus       302 R~t----a~elL~Hpw~~~~~~~~~~~  324 (355)
T d2b1pa1         302 RIS----VDDALQHPYINVWYDPAEVE  324 (355)
T ss_dssp             SCC----HHHHHTSTTTGGGCCHHHHT
T ss_pred             CcC----HHHHhcCcccCCCCCccccc
Confidence            999    99999999999854444433


No 47 
>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=9.3e-45  Score=398.95  Aligned_cols=260  Identities=21%  Similarity=0.364  Sum_probs=218.7

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCeEEEE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTHVCLI  743 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~~~lV  743 (998)
                      +++|++++.||+|+||+||+|.+..+|+.||||+++... ........+.+|+.+|+.++||||+++++++......++|
T Consensus         1 ~~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~-~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv   79 (292)
T d1unla_           1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDD-DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSC-SSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhh-CChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEE
Confidence            368999999999999999999999999999999997653 3445677889999999999999999999999999999999


Q ss_pred             EecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCC
Q 001902          744 TDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQL  823 (998)
Q Consensus       744 ~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~  823 (998)
                      |+++.+++|..++...  +.+++..++.++.|++.||+|||++|||||||||+|||++.++.+||+|||.|......   
T Consensus        80 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~---  154 (292)
T d1unla_          80 FEFCDQDLKKYFDSCN--GDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIP---  154 (292)
T ss_dssp             EECCSEEHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSC---
T ss_pred             eeeccccccccccccc--cccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCC---
Confidence            9999999998887654  56899999999999999999999999999999999999999999999999999654311   


Q ss_pred             CCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCC-CCChhHHHHHHHHHHHHHcCCCCCC-CCChHH
Q 001902          824 LLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAG-HTSAVDWWALGILLYEMLYGYTPFR-GKTRQK  901 (998)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~-~~~~sDIwSlG~il~eLltG~~Pf~-~~~~~~  901 (998)
                                              ........+++.|+|||.+.... ++.++|||||||++|+|++|..||. +.+...
T Consensus       155 ------------------------~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~  210 (292)
T d1unla_         155 ------------------------VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDD  210 (292)
T ss_dssp             ------------------------CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHH
T ss_pred             ------------------------CccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHH
Confidence                                    11223446788999999987765 6889999999999999999998864 445555


Q ss_pred             HHHHHHhCCCC---------------------------CCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCc
Q 001902          902 TFANILHKDLK---------------------------FPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFF  954 (998)
Q Consensus       902 ~~~~i~~~~~~---------------------------~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f  954 (998)
                      .+..+......                           .......+..+.+||.+||+.||.+|||    ++|+|+||||
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~s----a~e~L~Hp~f  286 (292)
T d1unla_         211 QLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRIS----AEEALQHPYF  286 (292)
T ss_dssp             HHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCC----HHHHTTSGGG
T ss_pred             HHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcC----HHHHhcChhh
Confidence            55554321000                           0011345778999999999999999999    9999999999


Q ss_pred             cCC
Q 001902          955 KGV  957 (998)
Q Consensus       955 ~~~  957 (998)
                      +.+
T Consensus       287 ~~~  289 (292)
T d1unla_         287 SDF  289 (292)
T ss_dssp             SSC
T ss_pred             cCC
Confidence            874


No 48 
>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.8e-45  Score=398.59  Aligned_cols=256  Identities=22%  Similarity=0.310  Sum_probs=209.1

Q ss_pred             cccCCcccccccCCCCceeEEEEEEccC---CeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCC
Q 001902          662 INLQHFRPIKPLGSGDTGSVHLVELCGS---GQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKT  738 (998)
Q Consensus       662 ~~~~~y~~~~~LG~G~~g~Vy~a~~~~~---~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~  738 (998)
                      |..++|++++.||+|+||.||+|++..+   ...||||++.+.........+.+.+|+.+|++++||||+++++++.+ +
T Consensus         5 i~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~   83 (273)
T d1u46a_           5 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-P   83 (273)
T ss_dssp             CCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             EchHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-c
Confidence            4456899999999999999999987433   34789999987766666777889999999999999999999999965 4


Q ss_pred             eEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccC
Q 001902          739 HVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTS  818 (998)
Q Consensus       739 ~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~  818 (998)
                      ..++|||||++++|.+++..+. ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus        84 ~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~  162 (273)
T d1u46a_          84 PMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALP  162 (273)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred             chheeeeeecCcchhhhhhccc-CCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcc
Confidence            6789999999999998887643 459999999999999999999999999999999999999999999999999996643


Q ss_pred             CCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHc-CCCCCCCC
Q 001902          819 CKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLY-GYTPFRGK  897 (998)
Q Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLlt-G~~Pf~~~  897 (998)
                      ....                        .........|+..|+|||++.+..++.++|||||||++|||+| |..||.+.
T Consensus       163 ~~~~------------------------~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~  218 (273)
T d1u46a_         163 QNDD------------------------HYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL  218 (273)
T ss_dssp             C-CC------------------------EEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cCCC------------------------cceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCc
Confidence            2111                        0112234568889999999999999999999999999999998 89999999


Q ss_pred             ChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChh
Q 001902          898 TRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHE  943 (998)
Q Consensus       898 ~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~  943 (998)
                      +..+.+..+......++....++..+.+||.+||..||.+|||+.+
T Consensus       219 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~e  264 (273)
T d1u46a_         219 NGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVA  264 (273)
T ss_dssp             CHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHH
Confidence            9999999998887777777778999999999999999999999443


No 49 
>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4.3e-45  Score=412.11  Aligned_cols=256  Identities=26%  Similarity=0.382  Sum_probs=213.5

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeC-----C
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTK-----T  738 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~-----~  738 (998)
                      .++|++++.||+|+||+||+|++..+|+.||||++++.. .+......+.+|+.+|++++||||+++++++...     .
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~-~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~   95 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF-QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF   95 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchh-cChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccC
Confidence            368999999999999999999999999999999998653 3445566788999999999999999999998643     3


Q ss_pred             eEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccC
Q 001902          739 HVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTS  818 (998)
Q Consensus       739 ~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~  818 (998)
                      ..++||+|+.|++|.+++..   ..+++..++.++.||+.||+|||++||+||||||+|||++.+|.+|++|||++....
T Consensus        96 ~~~~i~~~~~gg~L~~~~~~---~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~  172 (348)
T d2gfsa1          96 NDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD  172 (348)
T ss_dssp             CCCEEEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCT
T ss_pred             ceEEEEEeecCCchhhhccc---ccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccC
Confidence            34566677779999999965   349999999999999999999999999999999999999999999999999985432


Q ss_pred             CCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCC-CCChhHHHHHHHHHHHHHcCCCCCCCC
Q 001902          819 CKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAG-HTSAVDWWALGILLYEMLYGYTPFRGK  897 (998)
Q Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~-~~~~sDIwSlG~il~eLltG~~Pf~~~  897 (998)
                                                    .......||+.|+|||.+.+.. ++.++|||||||++|+|++|.+||.+.
T Consensus       173 ------------------------------~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~  222 (348)
T d2gfsa1         173 ------------------------------DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT  222 (348)
T ss_dssp             ------------------------------GGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ------------------------------cccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCC
Confidence                                          1123457999999999987754 578999999999999999999999998


Q ss_pred             ChHHHHHHHHhCCCCC-----------------------CC------CCCCcHHHHHHHHHccccCccCcCCChhcHHHH
Q 001902          898 TRQKTFANILHKDLKF-----------------------PS------STPTSLHAKQLMYRLLHRDPKSRLGSHEGANEI  948 (998)
Q Consensus       898 ~~~~~~~~i~~~~~~~-----------------------~~------~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~el  948 (998)
                      +.......+.......                       +.      ....+..+++||.+||+.||.+|||    +.++
T Consensus       223 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~t----a~el  298 (348)
T d2gfsa1         223 DHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRIT----AAQA  298 (348)
T ss_dssp             SHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCC----HHHH
T ss_pred             CHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcC----HHHH
Confidence            8877777665421111                       10      1346788999999999999999999    9999


Q ss_pred             HcCCCccCC
Q 001902          949 KKHPFFKGV  957 (998)
Q Consensus       949 L~Hp~f~~~  957 (998)
                      |+||||+..
T Consensus       299 L~Hp~f~~~  307 (348)
T d2gfsa1         299 LAHAYFAQY  307 (348)
T ss_dssp             HTSGGGTTT
T ss_pred             hcCHhhCCC
Confidence            999999975


No 50 
>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.1e-45  Score=396.69  Aligned_cols=250  Identities=22%  Similarity=0.376  Sum_probs=208.4

Q ss_pred             ccccccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEee-C
Q 001902          659 GEQINLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQT-K  737 (998)
Q Consensus       659 ~~~~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~-~  737 (998)
                      |+.+..++|++++.||+|+||.||+|.+  +|..||||+++..     ...+.+.+|+.++++++||||+++++++.+ .
T Consensus         1 ~w~i~~~~~~~~~~lG~G~fg~Vy~~~~--~~~~vAvK~i~~~-----~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~   73 (262)
T d1byga_           1 GWALNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKND-----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK   73 (262)
T ss_dssp             CCBCCGGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCC-----C--HHHHHTHHHHTTCCCTTBCCEEEEECCC-
T ss_pred             CCccCHHHeEEeEEEecCCCeEEEEEEE--CCeEEEEEEECcH-----HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecC
Confidence            5678888999999999999999999998  5789999999754     234678899999999999999999998854 5


Q ss_pred             CeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCcccc
Q 001902          738 THVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLT  817 (998)
Q Consensus       738 ~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~  817 (998)
                      +.+|+||||+++|+|.+++..+....+++..++.++.||+.||.|||+++|+||||||+|||++.+|.+||+|||+++..
T Consensus        74 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~  153 (262)
T d1byga_          74 GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEA  153 (262)
T ss_dssp             -CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC----
T ss_pred             CcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceec
Confidence            67899999999999999997654445899999999999999999999999999999999999999999999999998543


Q ss_pred             CCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHc-CCCCCCC
Q 001902          818 SCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLY-GYTPFRG  896 (998)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLlt-G~~Pf~~  896 (998)
                      ..                              ......+|+.|+|||++.+..++.++|||||||++|||+| |.+||..
T Consensus       154 ~~------------------------------~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~  203 (262)
T d1byga_         154 SS------------------------------TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR  203 (262)
T ss_dssp             --------------------------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTT
T ss_pred             CC------------------------------CCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCC
Confidence            21                              1223468899999999999999999999999999999998 8999998


Q ss_pred             CChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHc
Q 001902          897 KTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKK  950 (998)
Q Consensus       897 ~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~  950 (998)
                      .+....+..+..+ ...+.....+.++.+||.+||..||.+|||    +.+|++
T Consensus       204 ~~~~~~~~~i~~~-~~~~~~~~~~~~~~~li~~cl~~dP~~Rps----~~~l~~  252 (262)
T d1byga_         204 IPLKDVVPRVEKG-YKMDAPDGCPPAVYEVMKNCWHLDAAMRPS----FLQLRE  252 (262)
T ss_dssp             SCGGGHHHHHTTT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             CCHHHHHHHHHcC-CCCCCCccCCHHHHHHHHHHcccCHhHCcC----HHHHHH
Confidence            8887777776553 333344557899999999999999999999    555544


No 51 
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.3e-44  Score=399.39  Aligned_cols=260  Identities=24%  Similarity=0.357  Sum_probs=206.6

Q ss_pred             ccccCCcccccccCCCCceeEEEEEEcc-----CCeEEEEEEeecccccChhHHHHHHHHHHHHHhC-CCCCccceeEEE
Q 001902          661 QINLQHFRPIKPLGSGDTGSVHLVELCG-----SGQYFAMKAMDKGVMLNRNKVHRACAEREILDML-DHPFVPALYASF  734 (998)
Q Consensus       661 ~~~~~~y~~~~~LG~G~~g~Vy~a~~~~-----~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l-~h~nIv~l~~~~  734 (998)
                      .+..++|++++.||+|+||.||+|.+..     +++.||+|+++...  .......+..|..++.++ +|+||+.+++++
T Consensus         9 ei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~--~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~   86 (299)
T d1ywna1           9 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNLLGAC   86 (299)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC------CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEcccc--CcHHHHHHHHHHHHHHhhcCCCeEEEeeeee
Confidence            3556789999999999999999999754     35789999987542  334456677788877776 689999999987


Q ss_pred             ee-CCeEEEEEecCCCCchhHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEE
Q 001902          735 QT-KTHVCLITDYCPGGELFLLLDRQP--------------TKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVL  799 (998)
Q Consensus       735 ~~-~~~~~lV~E~~~ggsL~~~l~~~~--------------~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NIL  799 (998)
                      .. ++.+++|||||++|+|.+++....              ...+++..+..++.||+.||.|||++|||||||||+|||
T Consensus        87 ~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NIL  166 (299)
T d1ywna1          87 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNIL  166 (299)
T ss_dssp             CSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             ccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCcccee
Confidence            65 457899999999999999997532              234899999999999999999999999999999999999


Q ss_pred             EecCCcEEEEeccCccccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHH
Q 001902          800 LQGNGHVSLTDFDLSCLTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWA  879 (998)
Q Consensus       800 i~~~g~vkL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwS  879 (998)
                      ++.++.+||+|||+|+.......                         ........||+.|||||++.+..++.++||||
T Consensus       167 l~~~~~~Kl~DFGla~~~~~~~~-------------------------~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS  221 (299)
T d1ywna1         167 LSEKNVVKICDFGLARDIYKDPD-------------------------YVRKGDARLPLKWMAPETIFDRVYTIQSDVWS  221 (299)
T ss_dssp             ECGGGCEEECC------CCSCTT-------------------------SCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHH
T ss_pred             ECCCCcEEEccCcchhhcccccc-------------------------ccccCceeeCccccchhHhhcCCCCcccceee
Confidence            99999999999999965431111                         11234567999999999999999999999999


Q ss_pred             HHHHHHHHHcC-CCCCCCCChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcC
Q 001902          880 LGILLYEMLYG-YTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKH  951 (998)
Q Consensus       880 lG~il~eLltG-~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~H  951 (998)
                      |||++|||++| .+||.+......+..++.....++....++.++.+||.+||+.||.+|||    +.++++|
T Consensus       222 ~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt----~~eil~~  290 (299)
T d1ywna1         222 FGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPT----FSELVEH  290 (299)
T ss_dssp             HHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             hHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhHCcC----HHHHHHH
Confidence            99999999986 57888876666666655554444555567899999999999999999999    7777776


No 52 
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.6e-44  Score=399.94  Aligned_cols=254  Identities=22%  Similarity=0.315  Sum_probs=207.3

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCe----EEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEeeCCe
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQ----YFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQTKTH  739 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~----~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~~~~  739 (998)
                      ..+|++++.||+|+||+||+|.+..+|+    .||+|.++...  .....+.+.+|+.++++++|||||++++++.++ .
T Consensus         8 ~~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~   84 (317)
T d1xkka_           8 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEILDEAYVMASVDNPHVCRLLGICLTS-T   84 (317)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-S
T ss_pred             HHHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-C
Confidence            4579999999999999999999988876    57777776432  333456789999999999999999999999865 5


Q ss_pred             EEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCC
Q 001902          740 VCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSC  819 (998)
Q Consensus       740 ~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~  819 (998)
                      .+++|||+.+++|.+++... ...+++..+..++.||+.||+|||++|||||||||+|||++.++.+||+|||+|+....
T Consensus        85 ~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~  163 (317)
T d1xkka_          85 VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA  163 (317)
T ss_dssp             EEEEEECCTTCBHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTT
T ss_pred             eeEEEEeccCCccccccccc-ccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceeccc
Confidence            67888999999999988765 35699999999999999999999999999999999999999999999999999966432


Q ss_pred             CCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHc-CCCCCCCCC
Q 001902          820 KPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLY-GYTPFRGKT  898 (998)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLlt-G~~Pf~~~~  898 (998)
                      ...                         ........||+.|||||++.+..++.++|||||||++|||+| |.+||.+.+
T Consensus       164 ~~~-------------------------~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~  218 (317)
T d1xkka_         164 EEK-------------------------EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP  218 (317)
T ss_dssp             TCC---------------------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred             ccc-------------------------cccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC
Confidence            111                         011233468999999999999999999999999999999998 899999888


Q ss_pred             hHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcC
Q 001902          899 RQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKH  951 (998)
Q Consensus       899 ~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~H  951 (998)
                      ..+....+..+. ..+....++..+.+|+.+||..||.+|||    +.+|++|
T Consensus       219 ~~~~~~~i~~~~-~~~~p~~~~~~~~~li~~cl~~dP~~RPs----~~eil~~  266 (317)
T d1xkka_         219 ASEISSILEKGE-RLPQPPICTIDVYMIMVKCWMIDADSRPK----FRELIIE  266 (317)
T ss_dssp             GGGHHHHHHHTC-CCCCCTTBCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHHHHcCC-CCCCCcccCHHHHHHHHHhCCCChhhCcC----HHHHHHH
Confidence            777666665543 33444567899999999999999999999    7777766


No 53 
>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.7e-43  Score=389.98  Aligned_cols=260  Identities=22%  Similarity=0.320  Sum_probs=214.0

Q ss_pred             ccccccCCcccccccCCCCceeEEEEEEccCC-------eEEEEEEeecccccChhHHHHHHHHHHHHHhC-CCCCccce
Q 001902          659 GEQINLQHFRPIKPLGSGDTGSVHLVELCGSG-------QYFAMKAMDKGVMLNRNKVHRACAEREILDML-DHPFVPAL  730 (998)
Q Consensus       659 ~~~~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~-------~~valK~i~~~~~~~~~~~~~~~~E~~il~~l-~h~nIv~l  730 (998)
                      .+.+..++|++.+.||+|+||.||+|++..++       ..||||++++..  .......+.+|..++.++ +|||||++
T Consensus         7 ~~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~e~~~l~~~~~HpnIv~~   84 (299)
T d1fgka_           7 RWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA--TEKDLSDLISEMEMMKMIGKHKNIINL   84 (299)
T ss_dssp             TTBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             cCcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECccc--ChHHHHHHHHHHHHHHHhcCCCeEEec
Confidence            34567789999999999999999999986554       479999997653  334556788888888888 89999999


Q ss_pred             eEEEeeCCeEEEEEecCCCCchhHHHhhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCC
Q 001902          731 YASFQTKTHVCLITDYCPGGELFLLLDRQP--------------TKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPE  796 (998)
Q Consensus       731 ~~~~~~~~~~~lV~E~~~ggsL~~~l~~~~--------------~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~  796 (998)
                      ++++.+++.+++|||||++|+|.+++....              ...+++..+..++.||+.||+|||++|||||||||+
T Consensus        85 ~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~  164 (299)
T d1fgka_          85 LGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAAR  164 (299)
T ss_dssp             EEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGG
T ss_pred             ccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeeccc
Confidence            999999999999999999999999997542              235899999999999999999999999999999999


Q ss_pred             cEEEecCCcEEEEeccCccccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhH
Q 001902          797 NVLLQGNGHVSLTDFDLSCLTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVD  876 (998)
Q Consensus       797 NILi~~~g~vkL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sD  876 (998)
                      |||++.++.+||+|||+++.......                         ........||+.|+|||++.+..|+.++|
T Consensus       165 NiLl~~~~~~kl~dfg~~~~~~~~~~-------------------------~~~~~~~~~~~~y~aPE~l~~~~y~~k~D  219 (299)
T d1fgka_         165 NVLVTEDNVMKIADFGLARDIHHIDY-------------------------YKKTTNGRLPVKWMAPEALFDRIYTHQSD  219 (299)
T ss_dssp             GEEECTTCCEEECSTTCCCCGGGCCT-------------------------TCCCTTSCCGGGGSCHHHHHHCCCCHHHH
T ss_pred             ceeecCCCCeEeccchhhcccccccc-------------------------ccccccCCCChhhhhhhHhcCCCCCchhh
Confidence            99999999999999999965431110                         11234567899999999999999999999


Q ss_pred             HHHHHHHHHHHHc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHc
Q 001902          877 WWALGILLYEMLY-GYTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKK  950 (998)
Q Consensus       877 IwSlG~il~eLlt-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~  950 (998)
                      ||||||++|+|++ |.+||.+.+....+..+..+ ..++....++..+.+||.+||+.||.+|||    +.+|++
T Consensus       220 iwS~Gvvl~ell~~g~~p~~~~~~~~~~~~i~~~-~~~~~p~~~~~~l~~li~~cl~~dP~~Rps----~~eil~  289 (299)
T d1fgka_         220 VWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEG-HRMDKPSNCTNELYMMMRDCWHAVPSQRPT----FKQLVE  289 (299)
T ss_dssp             HHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTT-CCCCCCSSCCHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             hHHhHHHHHHhccCCCCCCCCCCHHHHHHHHHcC-CCCCCCccchHHHHHHHHHHccCCHhHCcC----HHHHHH
Confidence            9999999999997 79999988887776665543 444555668899999999999999999999    555554


No 54 
>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=1.5e-43  Score=391.01  Aligned_cols=255  Identities=20%  Similarity=0.266  Sum_probs=214.6

Q ss_pred             cccCCcccccccCCCCceeEEEEEEcc-----CCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEee
Q 001902          662 INLQHFRPIKPLGSGDTGSVHLVELCG-----SGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQT  736 (998)
Q Consensus       662 ~~~~~y~~~~~LG~G~~g~Vy~a~~~~-----~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~  736 (998)
                      +..++|++++.||+|+||+||+|++..     +++.||||+++...  .......+.+|+.+|++++||||+++++++..
T Consensus        10 ~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~   87 (301)
T d1lufa_          10 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDNPNIVKLLGVCAV   87 (301)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             CCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhc--ChHHHHHHHHHHHHHHhcCCCCcccceeeecc
Confidence            345689999999999999999999753     56899999987542  34456788999999999999999999999999


Q ss_pred             CCeEEEEEecCCCCchhHHHhhCC----------------------CCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCC
Q 001902          737 KTHVCLITDYCPGGELFLLLDRQP----------------------TKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLK  794 (998)
Q Consensus       737 ~~~~~lV~E~~~ggsL~~~l~~~~----------------------~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLk  794 (998)
                      .+..++||||+++|+|.+++....                      ...++...+..++.||+.||+|||+++|||||||
T Consensus        88 ~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlK  167 (301)
T d1lufa_          88 GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLA  167 (301)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             CCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEc
Confidence            999999999999999999986421                      2248889999999999999999999999999999


Q ss_pred             CCcEEEecCCcEEEEeccCccccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCCh
Q 001902          795 PENVLLQGNGHVSLTDFDLSCLTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSA  874 (998)
Q Consensus       795 P~NILi~~~g~vkL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~  874 (998)
                      |+|||++.++.+||+|||+|+......                         .........||+.|+|||.+.+..++.+
T Consensus       168 p~NILld~~~~~Kl~DFGls~~~~~~~-------------------------~~~~~~~~~~~~~y~aPE~~~~~~~t~k  222 (301)
T d1lufa_         168 TRNCLVGENMVVKIADFGLSRNIYSAD-------------------------YYKADGNDAIPIRWMPPESIFYNRYTTE  222 (301)
T ss_dssp             GGGEEECGGGCEEECCCSCHHHHTGGG-------------------------CBC----CCBCGGGCCHHHHHHCCCCHH
T ss_pred             ccceEECCCCcEEEccchhheeccCCc-------------------------cccccCCCCcCcCcCCHHHHccCCCChh
Confidence            999999999999999999986543111                         1112345678999999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCC-CCCCCCChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhc
Q 001902          875 VDWWALGILLYEMLYGY-TPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEG  944 (998)
Q Consensus       875 sDIwSlG~il~eLltG~-~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~  944 (998)
                      +|||||||++|||++|. +||.+.+..+.+..+..+.. .+....++.++.+||.+||+.||.+|||+.++
T Consensus       223 sDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~~~~-~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev  292 (301)
T d1lufa_         223 SDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNI-LACPENCPLELYNLMRLCWSKLPADRPSFCSI  292 (301)
T ss_dssp             HHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             hhhccchhhHHHHHccCCCCCCCCCHHHHHHHHHcCCC-CCCCccchHHHHHHHHHHcCCChhHCcCHHHH
Confidence            99999999999999985 78999888888888776653 23344678999999999999999999994443


No 55 
>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=7.5e-44  Score=394.74  Aligned_cols=255  Identities=22%  Similarity=0.315  Sum_probs=212.5

Q ss_pred             cccCCcccccccCCCCceeEEEEEEccCCeE--EEEEEeecccccChhHHHHHHHHHHHHHhC-CCCCccceeEEEeeCC
Q 001902          662 INLQHFRPIKPLGSGDTGSVHLVELCGSGQY--FAMKAMDKGVMLNRNKVHRACAEREILDML-DHPFVPALYASFQTKT  738 (998)
Q Consensus       662 ~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~--valK~i~~~~~~~~~~~~~~~~E~~il~~l-~h~nIv~l~~~~~~~~  738 (998)
                      ++.++|++.+.||+|+||.||+|.++.+|..  ||||.+...  ......+.+.+|+.+|.++ +||||+++++++..++
T Consensus         7 i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~   84 (309)
T d1fvra_           7 LDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY--ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG   84 (309)
T ss_dssp             CCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT
T ss_pred             cCHHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcc--cChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCC
Confidence            5667999999999999999999999888875  566766532  2334556789999999998 7999999999999999


Q ss_pred             eEEEEEecCCCCchhHHHhhC--------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCC
Q 001902          739 HVCLITDYCPGGELFLLLDRQ--------------PTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNG  804 (998)
Q Consensus       739 ~~~lV~E~~~ggsL~~~l~~~--------------~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g  804 (998)
                      .+|+||||+++|+|.+++.+.              ....+++..+..++.||+.||.|||++||+||||||+|||++.++
T Consensus        85 ~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~  164 (309)
T d1fvra_          85 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY  164 (309)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGG
T ss_pred             eeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCC
Confidence            999999999999999999753              235699999999999999999999999999999999999999999


Q ss_pred             cEEEEeccCccccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHH
Q 001902          805 HVSLTDFDLSCLTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILL  884 (998)
Q Consensus       805 ~vkL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il  884 (998)
                      .+||+|||+|.....                            ........||+.|+|||.+.+..++.++|||||||++
T Consensus       165 ~~kl~DfG~a~~~~~----------------------------~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil  216 (309)
T d1fvra_         165 VAKIADFGLSRGQEV----------------------------YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLL  216 (309)
T ss_dssp             CEEECCTTCEESSCE----------------------------ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHH
T ss_pred             ceEEccccccccccc----------------------------cccccceecCCcccchHHhccCCCCccceeehhHHHH
Confidence            999999999854321                            1112345689999999999999999999999999999


Q ss_pred             HHHHcC-CCCCCCCChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcC
Q 001902          885 YEMLYG-YTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKH  951 (998)
Q Consensus       885 ~eLltG-~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~H  951 (998)
                      |+|++| .+||.+.+..+.+..+..+. .++....++.++.+||.+||..||++|||    +.++++|
T Consensus       217 ~ell~~~~~p~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~li~~cl~~dP~~RPs----~~eil~~  279 (309)
T d1fvra_         217 WEIVSLGGTPYCGMTCAELYEKLPQGY-RLEKPLNCDDEVYDLMRQCWREKPYERPS----FAQILVS  279 (309)
T ss_dssp             HHHHTTSCCTTTTCCHHHHHHHGGGTC-CCCCCTTBCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHhcCCCCCCCCCHHHHHHHHHhcC-CCCCCccCCHHHHHHHHHHcCCChhHCcC----HHHHHHH
Confidence            999996 56788888888877776642 33444567899999999999999999999    7777766


No 56 
>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.2e-43  Score=392.71  Aligned_cols=271  Identities=18%  Similarity=0.233  Sum_probs=225.5

Q ss_pred             ccccccCCcccccccCCCCceeEEEEEEcc-----CCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEE
Q 001902          659 GEQINLQHFRPIKPLGSGDTGSVHLVELCG-----SGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYAS  733 (998)
Q Consensus       659 ~~~~~~~~y~~~~~LG~G~~g~Vy~a~~~~-----~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~  733 (998)
                      .+.+..++|++.+.||+|+||.||+|.+..     ++..||||+++...  .......+.+|+.++++++||||++++++
T Consensus        14 ~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~--~~~~~~~~~~E~~il~~l~h~nIv~~~~~   91 (308)
T d1p4oa_          14 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVMKEFNCHHVVRLLGV   91 (308)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS--CHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred             ceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECccc--ChHHHHHHHHHHHHHHHcCCCCEeeeeeE
Confidence            345667899999999999999999999853     35789999997542  44455678899999999999999999999


Q ss_pred             EeeCCeEEEEEecCCCCchhHHHhhC--------CCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCc
Q 001902          734 FQTKTHVCLITDYCPGGELFLLLDRQ--------PTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGH  805 (998)
Q Consensus       734 ~~~~~~~~lV~E~~~ggsL~~~l~~~--------~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~  805 (998)
                      +...+..++|||||++|+|.+++...        ....++...+..++.||+.||.|||+++|+||||||+|||++.+++
T Consensus        92 ~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~  171 (308)
T d1p4oa_          92 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFT  171 (308)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCC
T ss_pred             EecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCce
Confidence            99999999999999999999988642        1234788999999999999999999999999999999999999999


Q ss_pred             EEEEeccCccccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHH
Q 001902          806 VSLTDFDLSCLTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLY  885 (998)
Q Consensus       806 vkL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~  885 (998)
                      +||+|||+|.......                         .........||+.|+|||.+.+..++.++|||||||++|
T Consensus       172 ~Kl~DFGla~~~~~~~-------------------------~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~  226 (308)
T d1p4oa_         172 VKIGDFGMTRDIYETD-------------------------YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLW  226 (308)
T ss_dssp             EEECCTTCCCGGGGGG-------------------------CEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             EEEeecccceeccCCc-------------------------ceeeccceecccccCCHHHHccCCCCcccccccHHHHHH
Confidence            9999999996543111                         011223456899999999999999999999999999999


Q ss_pred             HHHcC-CCCCCCCChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHc--CCCccCC
Q 001902          886 EMLYG-YTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKK--HPFFKGV  957 (998)
Q Consensus       886 eLltG-~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~--Hp~f~~~  957 (998)
                      ||+|| .+||.+.+..+.+..+..+.. .+....++..+.+||.+||+.||.+|||+.++++.|.+  +|+|+.+
T Consensus       227 El~t~~~~p~~~~~~~~~~~~i~~~~~-~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~~~~~~  300 (308)
T d1p4oa_         227 EIATLAEQPYQGLSNEQVLRFVMEGGL-LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREV  300 (308)
T ss_dssp             HHHHTSCCTTTTSCHHHHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHHH
T ss_pred             HHHhCCCCCCCCCCHHHHHHHHHhCCC-CCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCcCC
Confidence            99997 588999888888888776543 33344578899999999999999999995554444433  7777654


No 57 
>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.9e-43  Score=390.33  Aligned_cols=260  Identities=21%  Similarity=0.316  Sum_probs=220.5

Q ss_pred             cccccCCcccccccCCCCceeEEEEEEc-----cCCeEEEEEEeecccccChhHHHHHHHHHHHHHhC-CCCCccceeEE
Q 001902          660 EQINLQHFRPIKPLGSGDTGSVHLVELC-----GSGQYFAMKAMDKGVMLNRNKVHRACAEREILDML-DHPFVPALYAS  733 (998)
Q Consensus       660 ~~~~~~~y~~~~~LG~G~~g~Vy~a~~~-----~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l-~h~nIv~l~~~  733 (998)
                      +.+..++|++.+.||+|+||.||+|.+.     .+++.||||+++...  .......+.+|+.+++.+ +|||||+++++
T Consensus        18 ~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~   95 (311)
T d1t46a_          18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA--HLTEREALMSELKVLSYLGNHMNIVNLLGA   95 (311)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECccc--CHHHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence            3455679999999999999999999863     467899999998643  344566788999999999 79999999999


Q ss_pred             EeeCCeEEEEEecCCCCchhHHHhhCC----------------CCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCc
Q 001902          734 FQTKTHVCLITDYCPGGELFLLLDRQP----------------TKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPEN  797 (998)
Q Consensus       734 ~~~~~~~~lV~E~~~ggsL~~~l~~~~----------------~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~N  797 (998)
                      +...+.+|+|||||++|+|.+++.+..                ...+++..+..++.||+.||+|||++|||||||||+|
T Consensus        96 ~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~N  175 (311)
T d1t46a_          96 CTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARN  175 (311)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             EeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccc
Confidence            999999999999999999999997642                2258999999999999999999999999999999999


Q ss_pred             EEEecCCcEEEEeccCccccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHH
Q 001902          798 VLLQGNGHVSLTDFDLSCLTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDW  877 (998)
Q Consensus       798 ILi~~~g~vkL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDI  877 (998)
                      ||++.++.+||+|||+++.......                         .......+||+.|+|||++.+..++.++||
T Consensus       176 Il~~~~~~~ki~DfG~~~~~~~~~~-------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DI  230 (311)
T d1t46a_         176 ILLTHGRITKICDFGLARDIKNDSN-------------------------YVVKGNARLPVKWMAPESIFNCVYTFESDV  230 (311)
T ss_dssp             EEEETTTEEEECCCGGGSCTTSCTT-------------------------SEECSSSEECGGGCCHHHHHHCCCCHHHHH
T ss_pred             ccccccCcccccccchheeccCCCc-------------------------ceEeeecccChHHcCHHHhcCCCCCCcccc
Confidence            9999999999999999965431111                         112334679999999999999999999999


Q ss_pred             HHHHHHHHHHHc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHc
Q 001902          878 WALGILLYEMLY-GYTPFRGKTRQKTFANILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKK  950 (998)
Q Consensus       878 wSlG~il~eLlt-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~  950 (998)
                      |||||++|+|+| |.+||.+.+....+..++......+.....+.++.+||.+||+.||.+|||    +.+|++
T Consensus       231 wS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs----~~~il~  300 (311)
T d1t46a_         231 WSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPT----FKQIVQ  300 (311)
T ss_dssp             HHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             cchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccccHHHHHHHHHHcCCChhHCcC----HHHHHH
Confidence            999999999998 777787777777777777766666666668899999999999999999999    555543


No 58 
>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=3.8e-42  Score=379.50  Aligned_cols=263  Identities=18%  Similarity=0.229  Sum_probs=204.1

Q ss_pred             CCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCC-ccceeEEEeeCCeEEEE
Q 001902          665 QHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPF-VPALYASFQTKTHVCLI  743 (998)
Q Consensus       665 ~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~n-Iv~l~~~~~~~~~~~lV  743 (998)
                      ++|++++.||+|+||.||+|.+..+|+.||||++.....     ...+..|+++++.++|++ |+.+..++...+..++|
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-----~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~iv   81 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV   81 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT-----SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc-----CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEE
Confidence            579999999999999999999999999999999876432     134678999999997765 55566667888999999


Q ss_pred             EecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEec---CCcEEEEeccCccccCCC
Q 001902          744 TDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQG---NGHVSLTDFDLSCLTSCK  820 (998)
Q Consensus       744 ~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~---~g~vkL~DFG~a~~~~~~  820 (998)
                      |||+ +++|.+.+... ...+++..+..++.||+.||+|||++|||||||||+|||++.   +..+||+|||+|+.....
T Consensus        82 me~~-~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~  159 (299)
T d1ckia_          82 MELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  159 (299)
T ss_dssp             EECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCT
T ss_pred             EEEc-CCchhhhhhhc-cCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceecccc
Confidence            9999 66776666543 356999999999999999999999999999999999999874   457999999999765422


Q ss_pred             CCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCChH
Q 001902          821 PQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQ  900 (998)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~~~  900 (998)
                      ...                    ...........+||+.|||||++.+..++.++|||||||++|+|++|..||......
T Consensus       160 ~~~--------------------~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~  219 (299)
T d1ckia_         160 RTH--------------------QHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA  219 (299)
T ss_dssp             TTC--------------------CBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC--
T ss_pred             ccc--------------------cceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchH
Confidence            111                    011123345678999999999999999999999999999999999999999876554


Q ss_pred             HHHHHHH---hCCCCCC---CCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCcc
Q 001902          901 KTFANIL---HKDLKFP---SSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFK  955 (998)
Q Consensus       901 ~~~~~i~---~~~~~~~---~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~  955 (998)
                      .....+.   ......+   ....++.++.+||.+||..||.+||++.+ +.++|+|+|.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~-i~~~l~~~~~~  279 (299)
T d1ckia_         220 TKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSY-LRQLFRNLFHR  279 (299)
T ss_dssp             -----HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccCChhHCcCHHH-HHHHHHHHHHH
Confidence            4333222   1111111   12356889999999999999999999544 45677877654


No 59 
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.2e-41  Score=376.61  Aligned_cols=251  Identities=18%  Similarity=0.223  Sum_probs=202.2

Q ss_pred             ccccCCCCceeEEEEEEccCC---eEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEEEee-CCeEEEEEe
Q 001902          670 IKPLGSGDTGSVHLVELCGSG---QYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYASFQT-KTHVCLITD  745 (998)
Q Consensus       670 ~~~LG~G~~g~Vy~a~~~~~~---~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~~~~-~~~~~lV~E  745 (998)
                      .+.||+|+||+||+|.+..++   ..||||.+++.  .+......+.+|+++|++++||||+++++++.. ++..++|||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E  109 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLP  109 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCC--CCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEE
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcc--cCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEE
Confidence            467999999999999986543   46899998742  355667889999999999999999999998765 568999999


Q ss_pred             cCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEeccCccccCCCCCCCC
Q 001902          746 YCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDFDLSCLTSCKPQLLL  825 (998)
Q Consensus       746 ~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~~~~~~~~~~  825 (998)
                      ||++++|.+++... ...++...+..++.|++.||.|||+++|+||||||+|||+++++.+||+|||++.........  
T Consensus       110 ~~~~g~l~~~~~~~-~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~--  186 (311)
T d1r0pa_         110 YMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFD--  186 (311)
T ss_dssp             CCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCC--
T ss_pred             EeecCchhhhhccc-cccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccccc--
Confidence            99999999998765 345788889999999999999999999999999999999999999999999999664322110  


Q ss_pred             CcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCCC-hHHHHH
Q 001902          826 PTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKT-RQKTFA  904 (998)
Q Consensus       826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~~-~~~~~~  904 (998)
                                           .........||+.|+|||.+....++.++|||||||++|||++|..||.... ......
T Consensus       187 ---------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~  245 (311)
T d1r0pa_         187 ---------------------SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV  245 (311)
T ss_dssp             ---------------------CTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHH
T ss_pred             ---------------------cceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHH
Confidence                                 0112234579999999999999999999999999999999999777776543 334444


Q ss_pred             HHHhCCCCCCCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcC
Q 001902          905 NILHKDLKFPSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKH  951 (998)
Q Consensus       905 ~i~~~~~~~~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~H  951 (998)
                      .+..+. ..+....++..+.+||.+||..||.+||+    +.++++|
T Consensus       246 ~i~~g~-~~~~p~~~~~~l~~li~~cl~~dP~~RPs----~~ei~~~  287 (311)
T d1r0pa_         246 YLLQGR-RLLQPEYCPDPLYEVMLKCWHPKAEMRPS----FSELVSR  287 (311)
T ss_dssp             HHHTTC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHcCC-CCCCcccCcHHHHHHHHHHcCCCHhHCcC----HHHHHHH
Confidence            555443 33344557889999999999999999999    6666665


No 60 
>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=100.00  E-value=1e-40  Score=366.53  Aligned_cols=252  Identities=20%  Similarity=0.238  Sum_probs=205.0

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCC-CCccceeEEEeeCCeEEE
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDH-PFVPALYASFQTKTHVCL  742 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h-~nIv~l~~~~~~~~~~~l  742 (998)
                      .++|++++.||+|+||+||+|++..+|+.||||++.....     ...+..|+++++.+.| +||+.+++++......|+
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~   78 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL   78 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC-----cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEE
Confidence            4689999999999999999999999999999999865421     2345678899999965 899999999999999999


Q ss_pred             EEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEec-----CCcEEEEeccCcccc
Q 001902          743 ITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQG-----NGHVSLTDFDLSCLT  817 (998)
Q Consensus       743 V~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~-----~g~vkL~DFG~a~~~  817 (998)
                      ||||+ +++|.+++... ...++...+..++.|++.||+|||++|||||||||+|||++.     ++.+||+|||+|+..
T Consensus        79 vme~~-~~~l~~~~~~~-~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~  156 (293)
T d1csna_          79 VIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFY  156 (293)
T ss_dssp             EEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEES
T ss_pred             EEEec-CCCHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEc
Confidence            99999 89999998765 346999999999999999999999999999999999999974     578999999999765


Q ss_pred             CCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhHHHHHHHHHHHHHcCCCCCCCC
Q 001902          818 SCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGK  897 (998)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDIwSlG~il~eLltG~~Pf~~~  897 (998)
                      .......                    ..+.......+||+.|||||++.+..++.++|||||||++|+|++|..||.+.
T Consensus       157 ~~~~~~~--------------------~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~  216 (293)
T d1csna_         157 RDPVTKQ--------------------HIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL  216 (293)
T ss_dssp             BCTTTCC--------------------BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             ccCcccc--------------------ceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCc
Confidence            4221110                    11122345678999999999999999999999999999999999999999764


Q ss_pred             Ch---HHHHHHHHhCCCCCC---CCCCCcHHHHHHHHHccccCccCcCCCh
Q 001902          898 TR---QKTFANILHKDLKFP---SSTPTSLHAKQLMYRLLHRDPKSRLGSH  942 (998)
Q Consensus       898 ~~---~~~~~~i~~~~~~~~---~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~  942 (998)
                      ..   ...+..+.......+   ....++.++.+|+..|+..+|++||++.
T Consensus       217 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~  267 (293)
T d1csna_         217 KAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYD  267 (293)
T ss_dssp             CSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHH
T ss_pred             cchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHhcCCcccCcCHH
Confidence            33   333333332211111   1134678999999999999999999843


No 61 
>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4e-40  Score=363.38  Aligned_cols=245  Identities=22%  Similarity=0.295  Sum_probs=186.0

Q ss_pred             CCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHH--HHHHHHhCCCCCccceeEEEeeCC----
Q 001902          665 QHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACA--EREILDMLDHPFVPALYASFQTKT----  738 (998)
Q Consensus       665 ~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~--E~~il~~l~h~nIv~l~~~~~~~~----  738 (998)
                      .+|.+.+.||+|+||.||+|++  +|+.||||+++...      ......  |+..+..++||||+++++++...+    
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~--~g~~vAvK~~~~~~------~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~   74 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSRE------ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT   74 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE--TTEEEEEEEECGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccc------hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcce
Confidence            4688899999999999999997  68999999986432      223333  444556789999999999997543    


Q ss_pred             eEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH--------CCceeccCCCCcEEEecCCcEEEEe
Q 001902          739 HVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHC--------QGIIYRDLKPENVLLQGNGHVSLTD  810 (998)
Q Consensus       739 ~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~--------~~IiHrDLkP~NILi~~~g~vkL~D  810 (998)
                      .+|+|||||++|+|.+++++.   .+++..+..++.|++.||.|||+        +|||||||||+||||+.++.+||+|
T Consensus        75 ~~~lv~Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~D  151 (303)
T d1vjya_          75 QLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD  151 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECC
T ss_pred             EEEEEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEe
Confidence            689999999999999999874   48999999999999999999996        5999999999999999999999999


Q ss_pred             ccCccccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCC------CCChhHHHHHHHHH
Q 001902          811 FDLSCLTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAG------HTSAVDWWALGILL  884 (998)
Q Consensus       811 FG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~------~~~~sDIwSlG~il  884 (998)
                      ||++.........                       ........+||+.|+|||++.+..      ++.++|||||||+|
T Consensus       152 FGl~~~~~~~~~~-----------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl  208 (303)
T d1vjya_         152 LGLAVRHDSATDT-----------------------IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVF  208 (303)
T ss_dssp             CTTCEEEETTTTE-----------------------ECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCccccccCCCcc-----------------------eeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHH
Confidence            9999664322110                       011233567999999999987653      46689999999999


Q ss_pred             HHHHcCCCCCCCCC--------------hHHHHHHHH-hCCCC--CCCC---CCCcHHHHHHHHHccccCccCcCCChh
Q 001902          885 YEMLYGYTPFRGKT--------------RQKTFANIL-HKDLK--FPSS---TPTSLHAKQLMYRLLHRDPKSRLGSHE  943 (998)
Q Consensus       885 ~eLltG~~Pf~~~~--------------~~~~~~~i~-~~~~~--~~~~---~~~s~~l~~Ll~~~L~~dP~~Rpt~~~  943 (998)
                      |||+||.+||....              ......... .....  ++..   ......+.+|+.+||..||.+|||+.+
T Consensus       209 ~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~e  287 (303)
T d1vjya_         209 WEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALR  287 (303)
T ss_dssp             HHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHH
T ss_pred             HHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHH
Confidence            99999988773211              112222332 22221  1111   112235889999999999999999443


No 62 
>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=1.6e-39  Score=368.24  Aligned_cols=263  Identities=23%  Similarity=0.372  Sum_probs=202.5

Q ss_pred             cccccccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCC-----------CCC
Q 001902          658 SGEQINLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLD-----------HPF  726 (998)
Q Consensus       658 ~~~~~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~-----------h~n  726 (998)
                      .|+.+..++|++++.||+|+||+||+|++..+|+.||||++++..    ...+...+|+.+++.++           |+|
T Consensus         6 ~g~~~~~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~----~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~   81 (362)
T d1q8ya_           6 KGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK----VYTEAAEDEIKLLQRVNDADNTKEDSMGANH   81 (362)
T ss_dssp             TTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTT
T ss_pred             CCCCccCCcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc----cchHHHHHHHHHHHHhcchhhhhhhhcCcCc
Confidence            466666678999999999999999999999999999999997542    23456678888888775           578


Q ss_pred             ccceeEEEee--CCeEEEEEecCCCCc-hhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCceeccCCCCcEEEec
Q 001902          727 VPALYASFQT--KTHVCLITDYCPGGE-LFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHC-QGIIYRDLKPENVLLQG  802 (998)
Q Consensus       727 Iv~l~~~~~~--~~~~~lV~E~~~ggs-L~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~-~~IiHrDLkP~NILi~~  802 (998)
                      |+++++++..  ....+++|+++..+. ............+++..++.++.||+.||.|||+ .||+||||||+|||++.
T Consensus        82 iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~  161 (362)
T d1q8ya_          82 ILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEI  161 (362)
T ss_dssp             BCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEE
T ss_pred             eEEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeec
Confidence            9999988754  456777777765544 3444444555679999999999999999999998 89999999999999987


Q ss_pred             CC------cEEEEeccCccccCCCCCCCCCcchhhhhcccCCCCcccccccccccccccCCCCcccchhhcCCCCCChhH
Q 001902          803 NG------HVSLTDFDLSCLTSCKPQLLLPTTNEKKRRHKGQQNPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVD  876 (998)
Q Consensus       803 ~g------~vkL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sD  876 (998)
                      ++      .++|+|||.|....                              ......+||+.|+|||++.+..++.++|
T Consensus       162 ~~~~~~~~~~kl~dfg~s~~~~------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~D  211 (362)
T d1q8ya_         162 VDSPENLIQIKIADLGNACWYD------------------------------EHYTNSIQTREYRSPEVLLGAPWGCGAD  211 (362)
T ss_dssp             EETTTTEEEEEECCCTTCEETT------------------------------BCCCSCCSCGGGCCHHHHHTCCCCTHHH
T ss_pred             cCcccccceeeEeecccccccc------------------------------cccccccccccccChhhccccCCCcccc
Confidence            65      39999999985432                              1123457999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCChH------HHHHHHHh--CC------------------------CCC-----------
Q 001902          877 WWALGILLYEMLYGYTPFRGKTRQ------KTFANILH--KD------------------------LKF-----------  913 (998)
Q Consensus       877 IwSlG~il~eLltG~~Pf~~~~~~------~~~~~i~~--~~------------------------~~~-----------  913 (998)
                      ||||||++++|++|+.||......      ..+...+.  +.                        +..           
T Consensus       212 iwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (362)
T d1q8ya_         212 IWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLT  291 (362)
T ss_dssp             HHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHH
T ss_pred             ccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcc
Confidence            999999999999999999754321      11111110  00                        000           


Q ss_pred             ---CCCCCCcHHHHHHHHHccccCccCcCCChhcHHHHHcCCCccCCC
Q 001902          914 ---PSSTPTSLHAKQLMYRLLHRDPKSRLGSHEGANEIKKHPFFKGVN  958 (998)
Q Consensus       914 ---~~~~~~s~~l~~Ll~~~L~~dP~~Rpt~~~~a~elL~Hp~f~~~~  958 (998)
                         ......+.++.+||.+||..||.+|||    ++|+|+||||+.+-
T Consensus       292 ~~~~~~~~~~~~~~dll~~mL~~dP~~Rpt----a~e~L~Hp~f~~~~  335 (362)
T d1q8ya_         292 EKYKFSKDEAKEISDFLSPMLQLDPRKRAD----AGGLVNHPWLKDTL  335 (362)
T ss_dssp             HTTCCCHHHHHHHHHHHGGGGCSSTTTCBC----HHHHHTCGGGTTCT
T ss_pred             cccccCcccCHHHHHHHHHHCCCChhHCcC----HHHHhcCcccCCCC
Confidence               001123567899999999999999999    99999999999653


No 63 
>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.86  E-value=3e-22  Score=204.24  Aligned_cols=136  Identities=19%  Similarity=0.146  Sum_probs=106.2

Q ss_pred             cccccccCCCCceeEEEEEEccCCeEEEEEEeeccccc---------------ChhHHHHHHHHHHHHHhCCCCCcccee
Q 001902          667 FRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVML---------------NRNKVHRACAEREILDMLDHPFVPALY  731 (998)
Q Consensus       667 y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~---------------~~~~~~~~~~E~~il~~l~h~nIv~l~  731 (998)
                      +.+.++||+|+||.||+|.+ .+|+.||||+++.....               ..........|..++.++.|.+++..+
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~-~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~   80 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVY   80 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred             chhCCEeeeCcceEEEEEEC-CCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEE
Confidence            35678999999999999998 57999999987643211               011123445688899999999999887


Q ss_pred             EEEeeCCeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCCCcEEEecCCcEEEEec
Q 001902          732 ASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVSLTDF  811 (998)
Q Consensus       732 ~~~~~~~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~~IiHrDLkP~NILi~~~g~vkL~DF  811 (998)
                      ++..    .+++|||+++..+..         ++...+..++.||+.+|+|||++||+||||||+|||++.+ .++|+||
T Consensus        81 ~~~~----~~lvme~~~~~~~~~---------l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~-~~~liDF  146 (191)
T d1zara2          81 AWEG----NAVLMELIDAKELYR---------VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDF  146 (191)
T ss_dssp             EEET----TEEEEECCCCEEGGG---------CCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETT-EEEECCC
T ss_pred             EecC----CEEEEEeeccccccc---------hhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCC-CEEEEEC
Confidence            6532    279999998776543         3444567889999999999999999999999999999965 5899999


Q ss_pred             cCcccc
Q 001902          812 DLSCLT  817 (998)
Q Consensus       812 G~a~~~  817 (998)
                      |.|...
T Consensus       147 G~a~~~  152 (191)
T d1zara2         147 PQSVEV  152 (191)
T ss_dssp             TTCEET
T ss_pred             CCcccC
Confidence            998543


No 64 
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.79  E-value=4.1e-19  Score=163.25  Aligned_cols=108  Identities=60%  Similarity=1.139  Sum_probs=102.0

Q ss_pred             cCCcEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHcCCcEEEEEEEEecCCCEE
Q 001902          198 FQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGAGTDPEDVAKIRETLQNGQSYCGRLLNYKKDGTPF  277 (998)
Q Consensus       198 ~~d~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~~~~~~~~~~~~i~~~l~~g~~~~~e~~~~~kdG~~~  277 (998)
                      +.++++|+|+..+||+|+|||++|++++||+.+|++|+++..+.+++........++.++..+..+++|+++++|||+.+
T Consensus         2 i~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~~~   81 (109)
T d1n9la_           2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF   81 (109)
T ss_dssp             CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred             ccceEEEEeCCCCCCeEEEEcHHHHHHHCcCHHHHcCCcceeeecccCCHHHhhhhhhHhhcCCceeeeEEEEecCCeEE
Confidence            56899999976668999999999999999999999999999888888888889999999999999999999999999999


Q ss_pred             EEEeeeeEEeCCCCCEEEEEEEEecchh
Q 001902          278 WNLLTIAPIKDDEGKVLKFIGMQVEVSK  305 (998)
Q Consensus       278 w~~~~~spi~d~~G~v~~~v~i~~DITe  305 (998)
                      |++++++|++|++|++.+++++++|||.
T Consensus        82 w~~~~~~pi~d~~G~v~~~v~~~~DITa  109 (109)
T d1n9la_          82 WNLLTVTPIKTPDGRVSKFVGVQVDVTS  109 (109)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred             EEEEEEEEEECCCCCEEEEEEEEEECCC
Confidence            9999999999999999999999999984


No 65 
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.75  E-value=6.7e-18  Score=154.99  Aligned_cols=104  Identities=45%  Similarity=0.913  Sum_probs=94.8

Q ss_pred             cCceEEEEcCCCCCCCEEEcCHHHHHHcCCChhhhcCCCCccccCCCCCHHHHHHHHHHHhcCCcEEEEEEEEecCCcEE
Q 001902          481 IEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIRAAIDNQTDVTVQLINYTKSGKKF  560 (998)
Q Consensus       481 ~~d~i~i~D~~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~~p~~~~~~~~~i~~~l~~g~~~~~e~~~~rkdG~~~  560 (998)
                      +.++++++|+.-.|++|+|||++|++|+||+++|++|+++..+.+++......+.+++.+..+..+.+|+++++|||+.+
T Consensus         2 i~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~~~   81 (109)
T d1n9la_           2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF   81 (109)
T ss_dssp             CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred             ccceEEEEeCCCCCCeEEEEcHHHHHHHCcCHHHHcCCcceeeecccCCHHHhhhhhhHhhcCCceeeeEEEEecCCeEE
Confidence            46899999964224459999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             EEEEEEeeeccCC----EEEEEEecCCc
Q 001902          561 WNLFHLQPMRDQK----YFIGVQLDGSE  584 (998)
Q Consensus       561 wv~~~~spi~d~~----~~vgi~rDITe  584 (998)
                      |++++++|++|++    +++++++|||.
T Consensus        82 w~~~~~~pi~d~~G~v~~~v~~~~DITa  109 (109)
T d1n9la_          82 WNLLTVTPIKTPDGRVSKFVGVQVDVTS  109 (109)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred             EEEEEEEEEECCCCCEEEEEEEEEECCC
Confidence            9999999999876    89999999994


No 66 
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.73  E-value=2.3e-17  Score=151.53  Aligned_cols=106  Identities=28%  Similarity=0.555  Sum_probs=98.0

Q ss_pred             cEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCc--ccCCCCChHHHHHHHHHHHcCCcEEEEEEEEecCCCEEE
Q 001902          201 TFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRF--LQGAGTDPEDVAKIRETLQNGQSYCGRLLNYKKDGTPFW  278 (998)
Q Consensus       201 ~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~--l~~~~~~~~~~~~i~~~l~~g~~~~~e~~~~~kdG~~~w  278 (998)
                      .++|+|+...|++|+|||++|++++||+.+|++|+++..  +.+++........+..++..+..+..+++.++++|+.+|
T Consensus         3 ~f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~g~~~w   82 (110)
T d1bywa_           3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFL   82 (110)
T ss_dssp             EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCCCEEEEEcHHHHHHhCCCHHHhcccCcccccceeeheecccccccchhhcccccccceeeeeecccceee
Confidence            478899888899999999999999999999999998763  446777788889999999999999999999999999999


Q ss_pred             EEeeeeEEeCCCCCEEEEEEEEecchhh
Q 001902          279 NLLTIAPIKDDEGKVLKFIGMQVEVSKH  306 (998)
Q Consensus       279 ~~~~~spi~d~~G~v~~~v~i~~DITer  306 (998)
                      +.++++|++|++|++++++++++|||||
T Consensus        83 ~~~~~~pi~d~~G~v~~~i~~~~DITer  110 (110)
T d1bywa_          83 CLVDVVPVKNEDGAVIMFILNFEVVMEK  110 (110)
T ss_dssp             EEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred             eeeeEEEEECCCCCEEEEEEEEEECCCC
Confidence            9999999999999999999999999986


No 67 
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.71  E-value=3.3e-17  Score=148.74  Aligned_cols=103  Identities=45%  Similarity=0.866  Sum_probs=98.6

Q ss_pred             cEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHcCCcEEEEEEEEecCCCEEEEE
Q 001902          201 TFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGAGTDPEDVAKIRETLQNGQSYCGRLLNYKKDGTPFWNL  280 (998)
Q Consensus       201 ~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~~~~~~~~~~~~i~~~l~~g~~~~~e~~~~~kdG~~~w~~  280 (998)
                      .++|+|+..+||+|+|+|++|++++||+.+|++|+++..+.+++........+...+..+..+.++++.+++||+.+|+.
T Consensus         2 ~fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~   81 (104)
T d1jnua_           2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNL   81 (104)
T ss_dssp             EEEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEE
T ss_pred             eEEEEcCCCCCCEEEEEcHHHHHHHCcCHHHHCCccceeccccccchHHHhhhhhhhhcCceeEeEEEEEecccceEEEE
Confidence            47899987779999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             eeeeEEeCCCCCEEEEEEEEecc
Q 001902          281 LTIAPIKDDEGKVLKFIGMQVEV  303 (998)
Q Consensus       281 ~~~spi~d~~G~v~~~v~i~~DI  303 (998)
                      ++++|++|++|++.+++++++||
T Consensus        82 ~~~~pi~d~~G~v~~~i~i~~DI  104 (104)
T d1jnua_          82 FHLQVMRDENGDVQYFIGVQQEM  104 (104)
T ss_dssp             EEEEEECTTTSSCCEEEEEEEEC
T ss_pred             EEEEEEECCCCCEEEEEEEEEcC
Confidence            99999999999999999999998


No 68 
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.67  E-value=3.6e-17  Score=154.60  Aligned_cols=125  Identities=22%  Similarity=0.267  Sum_probs=108.2

Q ss_pred             cccccccccccchHHHHHHHHHhcCCcEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCcccCCCCChHHHHHHH
Q 001902          175 SDEGGKEKGLPRVSDIVKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGAGTDPEDVAKIR  254 (998)
Q Consensus       175 t~~~~~e~~l~~~~~~l~~ild~~~d~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~~~~~~~~~~~~i~  254 (998)
                      |+..+++++|++++++|+.+++++++||+++|.   +|+|++||+++++++||+.+|++|+++..+.++.........+.
T Consensus         2 s~l~~~e~~l~~~e~~~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~   78 (130)
T d1ew0a_           2 SHMLETEDVVRARDAHLRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQ   78 (130)
T ss_dssp             CHHHHHHHHHHHHTSCHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTGGGHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeC---CccEEEEHHHHHHhhcCCHHHhcCCccccccccchhHHHHHHHH
Confidence            456788999999999999999999999999999   78899999999999999999999999988888777766666666


Q ss_pred             HHHHcCCc----EEEEEEEEecCCCEEEEEeeeeEEeCCCCCEEEEEEEEecch
Q 001902          255 ETLQNGQS----YCGRLLNYKKDGTPFWNLLTIAPIKDDEGKVLKFIGMQVEVS  304 (998)
Q Consensus       255 ~~l~~g~~----~~~e~~~~~kdG~~~w~~~~~spi~d~~G~v~~~v~i~~DIT  304 (998)
                      ..+..+..    ...++...++||+.+|+.++++|+.+.++  .+++++++|||
T Consensus        79 ~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i~~~~~--~~~~~i~rDIT  130 (130)
T d1ew0a_          79 RYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGGE--RFFTGFIRDLT  130 (130)
T ss_dssp             HHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECC
T ss_pred             HHHHhCCCccccceeeEEEEcCCCCEEEEEEEEEEEEECCe--EEEEEEEEECC
Confidence            66665543    46788889999999999999999987543  45889999998


No 69 
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.67  E-value=1.5e-16  Score=150.33  Aligned_cols=108  Identities=18%  Similarity=0.242  Sum_probs=95.8

Q ss_pred             cHHHHHhhcCceEEEEcCCCCCCCEEEcCHHHHHHcCCChhhhcCCCCccccCCCCCHHHHHHHHHHHhcCCc----EEE
Q 001902          473 DLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIRAAIDNQTD----VTV  548 (998)
Q Consensus       473 ~l~~i~e~~~d~i~i~D~~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~~p~~~~~~~~~i~~~l~~g~~----~~~  548 (998)
                      .|+.+++++++||+++|.+|+   |++||++|++|+||+++|++|+++..+.++.........+...+..+..    ...
T Consensus        17 ~~~~i~~~~~~~i~~~d~~g~---i~~~N~~~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (130)
T d1ew0a_          17 HLRSILDTVPDATVVSATDGT---IVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDR   93 (130)
T ss_dssp             CHHHHHTTCSSEEEEEETTSB---EEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTGGGHHHHHHHHHHHCCCSSTTSCE
T ss_pred             HHHHHHHcCCCeEEEEeCCcc---EEEEHHHHHHhhcCCHHHhcCCccccccccchhHHHHHHHHHHHHhCCCcccccee
Confidence            489999999999999999888   9999999999999999999999988888887777766666666655543    567


Q ss_pred             EEEEEecCCcEEEEEEEEeeeccCC--EEEEEEecCC
Q 001902          549 QLINYTKSGKKFWNLFHLQPMRDQK--YFIGVQLDGS  583 (998)
Q Consensus       549 e~~~~rkdG~~~wv~~~~spi~d~~--~~vgi~rDIT  583 (998)
                      ++...++||+.+|++++++|+.+++  .++++++|||
T Consensus        94 e~~~~~~dG~~~~v~~~~~~i~~~~~~~~~~i~rDIT  130 (130)
T d1ew0a_          94 VVSGQRKDGSTFPMKLAVGEMRSGGERFFTGFIRDLT  130 (130)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred             eEEEEcCCCCEEEEEEEEEEEEECCeEEEEEEEEECC
Confidence            8899999999999999999999887  8999999998


No 70 
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67  E-value=2e-16  Score=145.04  Aligned_cols=103  Identities=29%  Similarity=0.521  Sum_probs=93.6

Q ss_pred             ceEEEEcCCCCCCCEEEcCHHHHHHcCCChhhhcCCCCcc--ccCCCCCHHHHHHHHHHHhcCCcEEEEEEEEecCCcEE
Q 001902          483 KNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRF--LQGPETDPATVRKIRAAIDNQTDVTVQLINYTKSGKKF  560 (998)
Q Consensus       483 d~i~i~D~~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~--l~~p~~~~~~~~~i~~~l~~g~~~~~e~~~~rkdG~~~  560 (998)
                      ..++++|+++.|.+|+|||++|++|+||+++|++|+++..  +.+|+........+...+.++..+..++++++++|+.+
T Consensus         2 ~~f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~g~~~   81 (110)
T d1bywa_           2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF   81 (110)
T ss_dssp             CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred             ceEEEEcCCCCCCEEEEEcHHHHHHhCCCHHHhcccCcccccceeeheecccccccchhhcccccccceeeeeeccccee
Confidence            3578899887788899999999999999999999998643  45678888889999999999999999999999999999


Q ss_pred             EEEEEEeeeccCC----EEEEEEecCCcc
Q 001902          561 WNLFHLQPMRDQK----YFIGVQLDGSEH  585 (998)
Q Consensus       561 wv~~~~spi~d~~----~~vgi~rDITer  585 (998)
                      |++++++|++|++    +++++++|||||
T Consensus        82 w~~~~~~pi~d~~G~v~~~i~~~~DITer  110 (110)
T d1bywa_          82 LCLVDVVPVKNEDGAVIMFILNFEVVMEK  110 (110)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred             eeeeeEEEEECCCCCEEEEEEEEEECCCC
Confidence            9999999999887    899999999997


No 71 
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.64  E-value=1.2e-15  Score=138.26  Aligned_cols=99  Identities=72%  Similarity=1.185  Sum_probs=92.0

Q ss_pred             eEEEEcCCCCCCCEEEcCHHHHHHcCCChhhhcCCCCccccCCCCCHHHHHHHHHHHhcCCcEEEEEEEEecCCcEEEEE
Q 001902          484 NFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIRAAIDNQTDVTVQLINYTKSGKKFWNL  563 (998)
Q Consensus       484 ~i~i~D~~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~~p~~~~~~~~~i~~~l~~g~~~~~e~~~~rkdG~~~wv~  563 (998)
                      .++++|+...|++|+|||+|||+++||+.+|++|+++..+.+++......+.+...+..+..+.+|.+++++||+.+|++
T Consensus         2 ~fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~   81 (104)
T d1jnua_           2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNL   81 (104)
T ss_dssp             EEEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEE
T ss_pred             eEEEEcCCCCCCEEEEEcHHHHHHHCcCHHHHCCccceeccccccchHHHhhhhhhhhcCceeEeEEEEEecccceEEEE
Confidence            57899965445569999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             EEEeeeccCC----EEEEEEecC
Q 001902          564 FHLQPMRDQK----YFIGVQLDG  582 (998)
Q Consensus       564 ~~~spi~d~~----~~vgi~rDI  582 (998)
                      ++++|++|++    +++++++||
T Consensus        82 ~~~~pi~d~~G~v~~~i~i~~DI  104 (104)
T d1jnua_          82 FHLQVMRDENGDVQYFIGVQQEM  104 (104)
T ss_dssp             EEEEEECTTTSSCCEEEEEEEEC
T ss_pred             EEEEEEECCCCCEEEEEEEEEcC
Confidence            9999999886    999999998


No 72 
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.58  E-value=1.4e-15  Score=137.48  Aligned_cols=100  Identities=19%  Similarity=0.212  Sum_probs=86.1

Q ss_pred             ceEEEEcCCCCCCCEEEcCHHHHHHcCCChhhhcCCCCccccCCCCCHHHHHHHHHHHhcCC----cEEEEEEEEecCCc
Q 001902          483 KNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIRAAIDNQT----DVTVQLINYTKSGK  558 (998)
Q Consensus       483 d~i~i~D~~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~~p~~~~~~~~~i~~~l~~g~----~~~~e~~~~rkdG~  558 (998)
                      |||+++|.+|+   |+++|++|++|+||+++|++|++...+.++.........+...+....    ....+...++|||+
T Consensus         1 dgi~~~D~~G~---I~~~N~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~   77 (106)
T d1xj3a1           1 DAMIVIDGHGI---IQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGT   77 (106)
T ss_dssp             CCEEEEETTSB---EEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSC
T ss_pred             CEEEEECCCCc---EEEEcHHHHHHhhhchHhhcCCCcccccccccccchhhhhhhhhhhcccccccccceeeeeeccce
Confidence            69999999888   999999999999999999999998888888776666665555554333    25678999999999


Q ss_pred             EEEEEEEEeeeccCC--EEEEEEecCCcc
Q 001902          559 KFWNLFHLQPMRDQK--YFIGVQLDGSEH  585 (998)
Q Consensus       559 ~~wv~~~~spi~d~~--~~vgi~rDITer  585 (998)
                      .+|++++++|+.+++  +++++++||||+
T Consensus        78 ~~~v~~~~~~~~~~~~~~~~~~~~DITE~  106 (106)
T d1xj3a1          78 TFPMHLSIGEMQSGGEPYFTGFVRDLTEH  106 (106)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECHHH
T ss_pred             EEEEEEEEEEEEECCeEEEEEEEEeCCCC
Confidence            999999999999887  899999999974


No 73 
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=99.57  E-value=4.9e-15  Score=135.61  Aligned_cols=105  Identities=24%  Similarity=0.382  Sum_probs=87.4

Q ss_pred             HHHHHhhcCceEEEEcCCCCCCCEEEcCHHHHHHcCCChhhhcCCCCccccCCCCCHHHHHHHHHHHhcCC----cEEEE
Q 001902          474 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIRAAIDNQT----DVTVQ  549 (998)
Q Consensus       474 l~~i~e~~~d~i~i~D~~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~~p~~~~~~~~~i~~~l~~g~----~~~~e  549 (998)
                      |.++++++++||+++|.+|+   |+++|++|++|+||+++|++|++...+.++.........+...+..+.    ....|
T Consensus         3 ~~~~~e~~~d~i~~~d~~g~---i~~~N~~~~~l~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e   79 (113)
T d1v9ya_           3 FFPALEQNMMGAVLINENDE---VMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE   79 (113)
T ss_dssp             HHHHHHTCSSEEEEECTTSB---EEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CE
T ss_pred             HHHHHHcCcCcEEEEeCCCC---EEEEchhHhhhhccchhhhcCcceeccccccccccccccccccccccccccccccee
Confidence            78999999999999999888   999999999999999999999998888776666555555555554333    35678


Q ss_pred             EEEEecCCcEEEEEEEEeeeccCC--EEEEEEec
Q 001902          550 LINYTKSGKKFWNLFHLQPMRDQK--YFIGVQLD  581 (998)
Q Consensus       550 ~~~~rkdG~~~wv~~~~spi~d~~--~~vgi~rD  581 (998)
                      ...++|||+.+|++++++|+.+++  .+++++||
T Consensus        80 ~~~~~~dG~~~~v~~~~~~i~~~~~~~~~~v~rD  113 (113)
T d1v9ya_          80 LQLEKKDGSKIWTRFALSKVSAEGKVYYLALVRD  113 (113)
T ss_dssp             EEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEC
T ss_pred             eeeccccceeEEEEEEEEEEEECCeEEEEEEEEC
Confidence            889999999999999999999877  88999988


No 74 
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.54  E-value=3.5e-15  Score=137.47  Aligned_cols=106  Identities=15%  Similarity=0.173  Sum_probs=93.1

Q ss_pred             CcEEE--EecCCCCCceEEccHHHHHHcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHcCCcEEEEEEEEecCCCEE
Q 001902          200 QTFVV--SDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGAGTDPEDVAKIRETLQNGQSYCGRLLNYKKDGTPF  277 (998)
Q Consensus       200 d~i~i--~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~~~~~~~~~~~~i~~~l~~g~~~~~e~~~~~kdG~~~  277 (998)
                      ...+|  .|.   ||+|+|+|+++++++||+.+|++|+++..++++++.....+.+...+..+..+..+++++++||+.+
T Consensus         5 ~~~fi~r~~~---dG~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~   81 (114)
T d1p97a_           5 SKTFLSRHSM---DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV   81 (114)
T ss_dssp             CEEEEEEECT---TTSCSEECTTHHHHTSSCHHHHTTSCHHHHSCSSSHHHHHHHHHHHTTTSEEEEEEEEEECTTSCEE
T ss_pred             cCEEEEEECC---CCcEEEECHHHHHHcCCCccccccccccccccccccccceeeeeecccccceeecceeeeeecCcce
Confidence            34444  466   8889999999999999999999999998888888777777777777777777889999999999999


Q ss_pred             EEEeeeeEEeCC-CCCEEEEEEEEecchhhhH
Q 001902          278 WNLLTIAPIKDD-EGKVLKFIGMQVEVSKHTE  308 (998)
Q Consensus       278 w~~~~~spi~d~-~G~v~~~v~i~~DITerk~  308 (998)
                      |++++.+|++|+ +|++.+++++.+||||+|+
T Consensus        82 wv~~~~~~~~~~~~~~~~~ii~~~~dite~k~  113 (114)
T d1p97a_          82 WLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK  113 (114)
T ss_dssp             EEEEEEEEEECTTTCSEEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEeCCCCCEEEEEEEEEECChhhc
Confidence            999999999997 6899999999999999985


No 75 
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.52  E-value=8.6e-15  Score=134.76  Aligned_cols=102  Identities=17%  Similarity=0.143  Sum_probs=91.2

Q ss_pred             ceEEEEcCCCCCCCEEEcCHHHHHHcCCChhhhcCCCCccccCCCCCHHHHHHHHHHHhcCCcEEEEEEEEecCCcEEEE
Q 001902          483 KNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIRAAIDNQTDVTVQLINYTKSGKKFWN  562 (998)
Q Consensus       483 d~i~i~D~~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~~p~~~~~~~~~i~~~l~~g~~~~~e~~~~rkdG~~~wv  562 (998)
                      +.|+..|.+|+   |+|||+++++++||+.+|++|+++..+.+|++.....+.+...+.++..+..+++++++||+.+|+
T Consensus         7 ~fi~r~~~dG~---i~~~N~~~~~~~G~~~~el~g~~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~wv   83 (114)
T d1p97a_           7 TFLSRHSMDMK---FTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWL   83 (114)
T ss_dssp             EEEEEECTTTS---CSEECTTHHHHTSSCHHHHTTSCHHHHSCSSSHHHHHHHHHHHTTTSEEEEEEEEEECTTSCEEEE
T ss_pred             EEEEEECCCCc---EEEECHHHHHHcCCCccccccccccccccccccccceeeeeecccccceeecceeeeeecCcceEE
Confidence            44555699777   999999999999999999999998888999988888888888888777889999999999999999


Q ss_pred             EEEEeeeccC-C----EEEEEEecCCcccc
Q 001902          563 LFHLQPMRDQ-K----YFIGVQLDGSEHLE  587 (998)
Q Consensus       563 ~~~~spi~d~-~----~~vgi~rDITerk~  587 (998)
                      +++.+|+++. +    +++++.+||||+||
T Consensus        84 ~~~~~~~~~~~~~~~~~ii~~~~dite~k~  113 (114)
T d1p97a_          84 ETQGTVIYNPRNLQPQCIMCVNYVLSEIEK  113 (114)
T ss_dssp             EEEEEEEECTTTCSEEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEeCCCCCEEEEEEEEEECChhhc
Confidence            9999999975 3    89999999999996


No 76 
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.50  E-value=4.2e-14  Score=127.52  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=84.5

Q ss_pred             CcEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHcCCc----EEEEEEEEecCCC
Q 001902          200 QTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGAGTDPEDVAKIRETLQNGQS----YCGRLLNYKKDGT  275 (998)
Q Consensus       200 d~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~~~~~~~~~~~~i~~~l~~g~~----~~~e~~~~~kdG~  275 (998)
                      |||+++|.   +|+|+++|++|++++||+.+|++|+++..++++.........+...+.....    ...++..++|||+
T Consensus         1 dgi~~~D~---~G~I~~~N~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~   77 (106)
T d1xj3a1           1 DAMIVIDG---HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGT   77 (106)
T ss_dssp             CCEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSC
T ss_pred             CEEEEECC---CCcEEEEcHHHHHHhhhchHhhcCCCcccccccccccchhhhhhhhhhhcccccccccceeeeeeccce
Confidence            68999999   7779999999999999999999999998888877666655555555544432    4567888999999


Q ss_pred             EEEEEeeeeEEeCCCCCEEEEEEEEecchhh
Q 001902          276 PFWNLLTIAPIKDDEGKVLKFIGMQVEVSKH  306 (998)
Q Consensus       276 ~~w~~~~~spi~d~~G~v~~~v~i~~DITer  306 (998)
                      .+|++++++|+.+.++  .+++++++||||.
T Consensus        78 ~~~v~~~~~~~~~~~~--~~~~~~~~DITE~  106 (106)
T d1xj3a1          78 TFPMHLSIGEMQSGGE--PYFTGFVRDLTEH  106 (106)
T ss_dssp             EEEEEEEEEEEEETTE--EEEEEEEEECHHH
T ss_pred             EEEEEEEEEEEEECCe--EEEEEEEEeCCCC
Confidence            9999999999987544  5689999999974


No 77 
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=99.50  E-value=3.5e-14  Score=129.78  Aligned_cols=108  Identities=21%  Similarity=0.358  Sum_probs=86.0

Q ss_pred             HHHHHHHhcCCcEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHcCC----cEEE
Q 001902          190 IVKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGAGTDPEDVAKIRETLQNGQ----SYCG  265 (998)
Q Consensus       190 ~l~~ild~~~d~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~~~~~~~~~~~~i~~~l~~g~----~~~~  265 (998)
                      +|.++|+++++||+++|.   +|+|+++|++|++++||+.+|++|+++..+.+..........+...+..+.    ....
T Consensus         2 ~~~~~~e~~~d~i~~~d~---~g~i~~~N~~~~~l~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (113)
T d1v9ya_           2 IFFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSR   78 (113)
T ss_dssp             CHHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------C
T ss_pred             HHHHHHHcCcCcEEEEeC---CCCEEEEchhHhhhhccchhhhcCcceecccccccccccccccccccccccccccccce
Confidence            478999999999999998   788999999999999999999999998877776655555455444443332    3456


Q ss_pred             EEEEEecCCCEEEEEeeeeEEeCCCCCEEEEEEEEec
Q 001902          266 RLLNYKKDGTPFWNLLTIAPIKDDEGKVLKFIGMQVE  302 (998)
Q Consensus       266 e~~~~~kdG~~~w~~~~~spi~d~~G~v~~~v~i~~D  302 (998)
                      +...++|||+.+|++++++|+.+++|  ..++++++|
T Consensus        79 e~~~~~~dG~~~~v~~~~~~i~~~~~--~~~~~v~rD  113 (113)
T d1v9ya_          79 ELQLEKKDGSKIWTRFALSKVSAEGK--VYYLALVRD  113 (113)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEC
T ss_pred             eeeeccccceeEEEEEEEEEEEECCe--EEEEEEEEC
Confidence            78889999999999999999998654  457888887


No 78 
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=99.38  E-value=9.4e-13  Score=123.18  Aligned_cols=106  Identities=10%  Similarity=0.023  Sum_probs=91.3

Q ss_pred             HHHHHhhcCceEEEEcCCCCCCCEEEcCHHHHHHcCCChhhhcCCCCccccCC-CCCHHHHHHHHHHHhcCCcEEEEEEE
Q 001902          474 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGP-ETDPATVRKIRAAIDNQTDVTVQLIN  552 (998)
Q Consensus       474 l~~i~e~~~d~i~i~D~~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~~p-~~~~~~~~~i~~~l~~g~~~~~e~~~  552 (998)
                      +..+++++++||+++|.+|+   |+++|++++++|||+++|++|+++..+..| +........+.+.+..|.....+...
T Consensus        19 ~d~~ld~~p~gi~~lD~~G~---i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (125)
T d1nwza_          19 DDGQLDGLAFGAIQLDGDGN---ILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYT   95 (125)
T ss_dssp             CHHHHTTCSSEEEEEETTCB---EEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEE
T ss_pred             HHHHHhCCCccEEEEeCCCC---EEEEcHHHHHhhccchHhhcCCCHHHccCchhhhhheeeeceeeeecCCcceEEEEE
Confidence            68899999999999999888   999999999999999999999997655544 45556677788888889887777778


Q ss_pred             EecCCcEEEEEEEEeeeccCCEEEEEEecC
Q 001902          553 YTKSGKKFWNLFHLQPMRDQKYFIGVQLDG  582 (998)
Q Consensus       553 ~rkdG~~~wv~~~~spi~d~~~~vgi~rDI  582 (998)
                      .++||+.+|+++++.++.+++.+..+++||
T Consensus        96 ~~~~G~~~~v~v~l~~~~~g~~~~v~V~di  125 (125)
T d1nwza_          96 FDYQMTPTKVKVHMKKALSGDSYWVFVKRV  125 (125)
T ss_dssp             ECTTSCCEEEEEEEEECSSSSEEEEEEEEC
T ss_pred             eccCCcEEEEEEEEEEecCCCEEEEEEEEC
Confidence            899999999999999998888555677876


No 79 
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=99.37  E-value=8.7e-13  Score=120.42  Aligned_cols=101  Identities=13%  Similarity=-0.002  Sum_probs=82.9

Q ss_pred             HHHHHhhcCceEEEEcCCCCCCCEEEcCHHHHHHcCCChhhhcCCCCcccc-CCCCCHHHHHHHHHHHhcCCcEEEEEEE
Q 001902          474 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQ-GPETDPATVRKIRAAIDNQTDVTVQLIN  552 (998)
Q Consensus       474 l~~i~e~~~d~i~i~D~~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~-~p~~~~~~~~~i~~~l~~g~~~~~e~~~  552 (998)
                      ++++++++|+||+++|.+|+   |++||+++++||||+++|++|+++..+. ++.....+...+.+.+..|.........
T Consensus         5 ~~A~ld~~p~gvi~~D~~G~---I~~~N~aa~~~~G~~~eellG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~   81 (110)
T d1mzua_           5 GTAEFDALPVGAIQVDGSGV---IHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFV   81 (110)
T ss_dssp             -CTTGGGCSSEEEEEETTCB---EEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEE
T ss_pred             HHHHHhCCCcEEEEEcCCCC---EEEeHHHHHHHHcCCHHHHcCCCHHHhcCChhhhHHHHHHHHHHHhccccCcceEEE
Confidence            56789999999999999887   9999999999999999999999975544 4455666778888989888764443444


Q ss_pred             EecCCcEEEEEEEEeeeccCC-EEEE
Q 001902          553 YTKSGKKFWNLFHLQPMRDQK-YFIG  577 (998)
Q Consensus       553 ~rkdG~~~wv~~~~spi~d~~-~~vg  577 (998)
                      .++||+.+++++++++..+.+ .++-
T Consensus        82 l~~~G~~~~v~v~~~~~~~~~~~~i~  107 (110)
T d1mzua_          82 FDFQMAPVRVQIRMQNAGVPDRYWIF  107 (110)
T ss_dssp             EECSSCEEEEEEEEEECSSTTEEEEE
T ss_pred             EecCCceEEEEEEEEEecCCCEEEEE
Confidence            689999999999999988777 4443


No 80 
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.31  E-value=3.1e-13  Score=124.24  Aligned_cols=102  Identities=15%  Similarity=0.163  Sum_probs=86.0

Q ss_pred             hhcCceEEEEcC-CCCCCCEEEcCHHHHHHcCCChhhhcCCCCccccCCCCCHHHHHHHHHHHhcCCc----EEEEEEEE
Q 001902          479 ERIEKNFVITDP-RLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIRAAIDNQTD----VTVQLINY  553 (998)
Q Consensus       479 e~~~d~i~i~D~-~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~~p~~~~~~~~~i~~~l~~g~~----~~~e~~~~  553 (998)
                      +.+.+||+++|. +|+   |++||++++++|||+++|++|+++.++.++++.......+...+.++..    +..+...+
T Consensus         5 ~~~n~AI~~id~~~G~---I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~   81 (114)
T d1ll8a_           5 PEFNKAIFTVDAKTTE---ILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDII   81 (114)
T ss_dssp             TTTTCEEEEEETTTCB---EEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEEC
T ss_pred             hhcCcEEEEEECCCCE---EEEECHHHHHhhcCCHHHHcCCCeeeecCcccHHHHHHHHHHHHhcCCCccceeeEEEEEE
Confidence            456789999995 477   9999999999999999999999999999888877766555555555532    33478889


Q ss_pred             ecCCcEEEEEEEEeeeccCC--EEEEEEecCC
Q 001902          554 TKSGKKFWNLFHLQPMRDQK--YFIGVQLDGS  583 (998)
Q Consensus       554 rkdG~~~wv~~~~spi~d~~--~~vgi~rDIT  583 (998)
                      ++||+.+||+++++++..++  .++++++||+
T Consensus        82 ~~~G~~~pvevs~~~i~~~~~~~~l~vi~dV~  113 (114)
T d1ll8a_          82 SRSGEKIPVSVWMKRMRQERRLCCVVVLEPVE  113 (114)
T ss_dssp             CTTCCCEEEECCEECCBSSSSBEEEEEEEECC
T ss_pred             ccCCcEEEEEEEEEEEEECCeEEEEEEEEECc
Confidence            99999999999999998777  8999999993


No 81 
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=99.28  E-value=5e-12  Score=118.12  Aligned_cols=108  Identities=19%  Similarity=0.140  Sum_probs=88.3

Q ss_pred             HHHHHHHHhcCCcEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCccc-CCCCChHHHHHHHHHHHcCCcEEEEE
Q 001902          189 DIVKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQ-GAGTDPEDVAKIRETLQNGQSYCGRL  267 (998)
Q Consensus       189 ~~l~~ild~~~d~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~-~~~~~~~~~~~i~~~l~~g~~~~~e~  267 (998)
                      .++..++|++++||+++|.   +|+|+++|+++++++||+++|++|+++..++ |+.........+.+++.+|.....+.
T Consensus        17 ~~~d~~ld~~p~gi~~lD~---~G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~   93 (125)
T d1nwza_          17 KMDDGQLDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFE   93 (125)
T ss_dssp             TCCHHHHTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHhCCCccEEEEeC---CCCEEEEcHHHHHhhccchHhhcCCCHHHccCchhhhhheeeeceeeeecCCcceEEE
Confidence            4567899999999999999   7889999999999999999999999986555 44455566778888898998877777


Q ss_pred             EEEecCCCEEEEEeeeeEEeCCCCCEEEEEEEEecc
Q 001902          268 LNYKKDGTPFWNLLTIAPIKDDEGKVLKFIGMQVEV  303 (998)
Q Consensus       268 ~~~~kdG~~~w~~~~~spi~d~~G~v~~~v~i~~DI  303 (998)
                      ..++++|..+|+++++.++.+  |+-  +..+++||
T Consensus        94 ~~~~~~G~~~~v~v~l~~~~~--g~~--~~v~V~di  125 (125)
T d1nwza_          94 YTFDYQMTPTKVKVHMKKALS--GDS--YWVFVKRV  125 (125)
T ss_dssp             EEECTTSCCEEEEEEEEECSS--SSE--EEEEEEEC
T ss_pred             EEeccCCcEEEEEEEEEEecC--CCE--EEEEEEEC
Confidence            778999999999999888744  442  23566775


No 82 
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=99.26  E-value=1e-11  Score=113.15  Aligned_cols=96  Identities=10%  Similarity=0.071  Sum_probs=78.2

Q ss_pred             HHHHHHHhcCCcEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCc-ccCCCCChHHHHHHHHHHHcCCcEEEEEE
Q 001902          190 IVKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRF-LQGAGTDPEDVAKIRETLQNGQSYCGRLL  268 (998)
Q Consensus       190 ~l~~ild~~~d~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~-l~~~~~~~~~~~~i~~~l~~g~~~~~e~~  268 (998)
                      .+.++||++|+||+++|.   +|+|++||+++++|+||+++|++|+++.. +.|+.....+...+.+.+.+|........
T Consensus         4 ~~~A~ld~~p~gvi~~D~---~G~I~~~N~aa~~~~G~~~eellG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~   80 (110)
T d1mzua_           4 MGTAEFDALPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDF   80 (110)
T ss_dssp             --CTTGGGCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEE
T ss_pred             HHHHHHhCCCcEEEEEcC---CCCEEEeHHHHHHHHcCCHHHHcCCCHHHhcCChhhhHHHHHHHHHHHhccccCcceEE
Confidence            456789999999999998   88899999999999999999999999864 44455566677888888999886444334


Q ss_pred             EEecCCCEEEEEeeeeEEeC
Q 001902          269 NYKKDGTPFWNLLTIAPIKD  288 (998)
Q Consensus       269 ~~~kdG~~~w~~~~~spi~d  288 (998)
                      ..+++|..+++++++.+..+
T Consensus        81 ~l~~~G~~~~v~v~~~~~~~  100 (110)
T d1mzua_          81 VFDFQMAPVRVQIRMQNAGV  100 (110)
T ss_dssp             EEECSSCEEEEEEEEEECSS
T ss_pred             EEecCCceEEEEEEEEEecC
Confidence            46899999999999888743


No 83 
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.16  E-value=5.1e-12  Score=115.93  Aligned_cols=105  Identities=12%  Similarity=0.163  Sum_probs=84.0

Q ss_pred             HhcCCcEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHcCCc----EEEEEEEEe
Q 001902          196 STFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGAGTDPEDVAKIRETLQNGQS----YCGRLLNYK  271 (998)
Q Consensus       196 d~~~d~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~~~~~~~~~~~~i~~~l~~g~~----~~~e~~~~~  271 (998)
                      +.+.++|+++|..  +|+|+++|++++++|||+.+|++|+++.++.++.........+...+..+..    +..++..++
T Consensus         5 ~~~n~AI~~id~~--~G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~   82 (114)
T d1ll8a_           5 PEFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIIS   82 (114)
T ss_dssp             TTTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred             hhcCcEEEEEECC--CCEEEEECHHHHHhhcCCHHHHcCCCeeeecCcccHHHHHHHHHHHHhcCCCccceeeEEEEEEc
Confidence            4577899999953  5779999999999999999999999999999887776655555555554432    233677889


Q ss_pred             cCCCEEEEEeeeeEEeCCCCCEEEEEEEEecch
Q 001902          272 KDGTPFWNLLTIAPIKDDEGKVLKFIGMQVEVS  304 (998)
Q Consensus       272 kdG~~~w~~~~~spi~d~~G~v~~~v~i~~DIT  304 (998)
                      ++|+.+|++++++++..++ +. .++++++||+
T Consensus        83 ~~G~~~pvevs~~~i~~~~-~~-~~l~vi~dV~  113 (114)
T d1ll8a_          83 RSGEKIPVSVWMKRMRQER-RL-CCVVVLEPVE  113 (114)
T ss_dssp             TTCCCEEEECCEECCBSSS-SB-EEEEEEEECC
T ss_pred             cCCcEEEEEEEEEEEEECC-eE-EEEEEEEECc
Confidence            9999999999999997654 43 4789999994


No 84 
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.85  E-value=8.6e-10  Score=99.83  Aligned_cols=91  Identities=12%  Similarity=0.109  Sum_probs=75.5

Q ss_pred             EEEEcCCCCCCCEEEcCHHHHHHcCCC-hhhhcCCCCccccCCCCCHH--HHHHHHHHHhcCCcEEEEEEEEecCCcEEE
Q 001902          485 FVITDPRLPDNPIIFASDSFLELTEYS-REEILGRNCRFLQGPETDPA--TVRKIRAAIDNQTDVTVQLINYTKSGKKFW  561 (998)
Q Consensus       485 i~i~D~~G~d~~I~~vN~a~~~l~Gy~-~eEliG~~~~~l~~p~~~~~--~~~~i~~~l~~g~~~~~e~~~~rkdG~~~w  561 (998)
                      +.-.|.+|+   |+++|+++++++||. .+||+|+++.+++||++.+.  ....+...+..|.....++++++|||+.+|
T Consensus         5 ~trh~~~g~---~~~vd~~~~~~~gy~~~eelig~s~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~vW   81 (109)
T d1oj5a_           5 MTKQDTTGK---IISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLS   81 (109)
T ss_dssp             EEEECTTCC---EEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEE
T ss_pred             EEEECCCce---EEEECHHHhhHhhcCCHHHHcCCcHHHeECcccchHHHhhHHHHHHHhhcccchhhhhhhhccCcEEE
Confidence            445688777   999999999999998 59999999999999988653  334456777888889999999999999999


Q ss_pred             EEEEEeeeccCC-----EEEEE
Q 001902          562 NLFHLQPMRDQK-----YFIGV  578 (998)
Q Consensus       562 v~~~~spi~d~~-----~~vgi  578 (998)
                      ++.+..++++..     .++|+
T Consensus        82 v~t~~~~~~~~~~~~~~~Ii~~  103 (109)
T d1oj5a_          82 AHTRCKLCYPQSPDMQPFIMGI  103 (109)
T ss_dssp             EEEEEEEECC----CCCEEEEE
T ss_pred             EEEEEEEEECCCCCcccEEEEE
Confidence            999999999764     55554


No 85 
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.82  E-value=9.6e-10  Score=99.51  Aligned_cols=89  Identities=11%  Similarity=0.061  Sum_probs=71.0

Q ss_pred             CCceEEccHHHHHHcCCCh-hhhcCCCCCcccCCCCCh--HHHHHHHHHHHcCCcEEEEEEEEecCCCEEEEEeeeeEEe
Q 001902          211 DYPIMYASAGFFKMTGYTS-KEVVGRNCRFLQGAGTDP--EDVAKIRETLQNGQSYCGRLLNYKKDGTPFWNLLTIAPIK  287 (998)
Q Consensus       211 dG~I~~vN~a~~~l~Gys~-eEliG~~~~~l~~~~~~~--~~~~~i~~~l~~g~~~~~e~~~~~kdG~~~w~~~~~spi~  287 (998)
                      +|+|+++|+++++++||.. +|++|+++..++||++..  .........+..|.....++++++|||+.+|++.+..+++
T Consensus        11 ~g~~~~vd~~~~~~~gy~~~eelig~s~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~vWv~t~~~~~~   90 (109)
T d1oj5a_          11 TGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTRCKLCY   90 (109)
T ss_dssp             TCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEEEEEEEEC
T ss_pred             CceEEEECHHHhhHhhcCCHHHHcCCcHHHeECcccchHHHhhHHHHHHHhhcccchhhhhhhhccCcEEEEEEEEEEEE
Confidence            8889999999999999985 999999999999988754  2333456677888888899999999999999999999999


Q ss_pred             CCCCCE-EEEEEE
Q 001902          288 DDEGKV-LKFIGM  299 (998)
Q Consensus       288 d~~G~v-~~~v~i  299 (998)
                      |+.|+. ..++|+
T Consensus        91 ~~~~~~~~~Ii~~  103 (109)
T d1oj5a_          91 PQSPDMQPFIMGI  103 (109)
T ss_dssp             C----CCCEEEEE
T ss_pred             CCCCCcccEEEEE
Confidence            875543 344443


No 86 
>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}
Probab=98.39  E-value=1.1e-06  Score=91.70  Aligned_cols=139  Identities=13%  Similarity=0.095  Sum_probs=96.6

Q ss_pred             CCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCC-CCCccceeEEEeeCCeEEEE
Q 001902          665 QHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLD-HPFVPALYASFQTKTHVCLI  743 (998)
Q Consensus       665 ~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~-h~nIv~l~~~~~~~~~~~lV  743 (998)
                      ..|+.++..+.++.+.||++.  ..+..+++|.........   ...+..|..+++.+. +--+++++.+...++..++|
T Consensus        14 ~~~~~~~~~~G~s~~~v~rv~--~~~~~~vlk~~~~~~~~~---~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv   88 (263)
T d1j7la_          14 EKYRCVKDTEGMSPAKVYKLV--GENENLYLKMTDSRYKGT---TYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL   88 (263)
T ss_dssp             TTSEEEECSCCCSSSEEEEEE--CSSCEEEEEEECGGGTTS---TTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred             hceEEEEcCCCCCCCcEEEEE--eCCCeEEEEEcCCCcccc---hhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEE
Confidence            467777766556667899886  356678899876543222   234566888887773 44467888888888999999


Q ss_pred             EecCCCCchhHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-------------------------------------
Q 001902          744 TDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQ-------------------------------------  786 (998)
Q Consensus       744 ~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qil~aL~~LH~~-------------------------------------  786 (998)
                      |++++|.++.+.....       .....++.++...+..||+.                                     
T Consensus        89 ~~~l~G~~~~~~~~~~-------~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (263)
T d1j7la_          89 MSEADGVLCSEEYEDE-------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEED  161 (263)
T ss_dssp             EECCSSEEHHHHTTTC-------SCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTT
T ss_pred             EEeccccccccccccc-------ccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhccccc
Confidence            9999998886554221       11223345555555555531                                     


Q ss_pred             ----------------------CceeccCCCCcEEEecCCcEEEEeccCcc
Q 001902          787 ----------------------GIIYRDLKPENVLLQGNGHVSLTDFDLSC  815 (998)
Q Consensus       787 ----------------------~IiHrDLkP~NILi~~~g~vkL~DFG~a~  815 (998)
                                            .++|+|+.|.|||++.++.+-|+||+.+.
T Consensus       162 ~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         162 TPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             CSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             ccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence                                  15899999999999977666799999884


No 87 
>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}
Probab=97.92  E-value=1.7e-05  Score=81.84  Aligned_cols=75  Identities=16%  Similarity=0.141  Sum_probs=53.0

Q ss_pred             ccCCCCc-eeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCC--CCccceeEEEeeCCeEEEEEecCC
Q 001902          672 PLGSGDT-GSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDH--PFVPALYASFQTKTHVCLITDYCP  748 (998)
Q Consensus       672 ~LG~G~~-g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h--~nIv~l~~~~~~~~~~~lV~E~~~  748 (998)
                      .+..|.. +.||++.. ..+..+++|.......      ..+..|...++.+..  -.+++++.+..+.+..++||+|++
T Consensus        17 ~~~~G~s~~~v~r~~~-~~~~~~vlK~~~~~~~------~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~   89 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSA-QGRPVLFVKTDLSGAL------NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVP   89 (255)
T ss_dssp             ECSCTTSSCEEEEEEC-TTSCCEEEEEECSCTT------SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCS
T ss_pred             EcCCcccCCeEEEEEe-CCCCEEEEEeCCccCH------hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeee
Confidence            4455554 67899886 4577789998765422      235667777777633  336788888888889999999998


Q ss_pred             CCchh
Q 001902          749 GGELF  753 (998)
Q Consensus       749 ggsL~  753 (998)
                      |.++.
T Consensus        90 G~~~~   94 (255)
T d1nd4a_          90 GQDLL   94 (255)
T ss_dssp             SEETT
T ss_pred             ccccc
Confidence            87663


No 88 
>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}
Probab=97.82  E-value=1.9e-05  Score=87.26  Aligned_cols=81  Identities=15%  Similarity=0.130  Sum_probs=51.0

Q ss_pred             ccccCCCCceeEEEEEEccCCeEEEEEEeecccccC----hhHHHHHHHHHHHHHhCC-C--CCccceeEEEeeCCeEEE
Q 001902          670 IKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLN----RNKVHRACAEREILDMLD-H--PFVPALYASFQTKTHVCL  742 (998)
Q Consensus       670 ~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~----~~~~~~~~~E~~il~~l~-h--~nIv~l~~~~~~~~~~~l  742 (998)
                      .+.||.|....||++.+..+++.+++|.-.......    +....+...|...|+.+. +  ..+++++.+  +....++
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~l  108 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  108 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEE
Confidence            457899999999999987778899999755321111    112344556888887662 2  456666643  3445578


Q ss_pred             EEecCCCCch
Q 001902          743 ITDYCPGGEL  752 (998)
Q Consensus       743 V~E~~~ggsL  752 (998)
                      |||++.+..+
T Consensus       109 vmE~L~~~~~  118 (392)
T d2pula1         109 VMEDLSHLKI  118 (392)
T ss_dssp             EECCCTTSEE
T ss_pred             EEeccCCccc
Confidence            9999977553


No 89 
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=96.95  E-value=0.001  Score=72.91  Aligned_cols=74  Identities=20%  Similarity=0.304  Sum_probs=51.2

Q ss_pred             ccccCCCCceeEEEEEEcc-------CCeEEEEEEeecccccChhHHHHHHHHHHHHHhCC-CCCccceeEEEeeCCeEE
Q 001902          670 IKPLGSGDTGSVHLVELCG-------SGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLD-HPFVPALYASFQTKTHVC  741 (998)
Q Consensus       670 ~~~LG~G~~g~Vy~a~~~~-------~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~-h~nIv~l~~~~~~~~~~~  741 (998)
                      +++|+.|-.-.+|++....       ..+.|++++....  .   ......+|..+++.+. +.-.+++++++.+    +
T Consensus        47 v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~--~---~~idr~~E~~i~~~ls~~gl~Pkll~~~~~----g  117 (395)
T d1nw1a_          47 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--E---TESHLVAESVIFTLLSERHLGPKLYGIFSG----G  117 (395)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--C---CHHHHHHHHHHHHHHHHTTSSSCEEEEETT----E
T ss_pred             EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCc--c---hhhHHHHHHHHHHHHHhCCCCCeEEEEcCC----c
Confidence            3678999999999998743       2456888876521  1   1234567888988884 4334677776643    5


Q ss_pred             EEEecCCCCch
Q 001902          742 LITDYCPGGEL  752 (998)
Q Consensus       742 lV~E~~~ggsL  752 (998)
                      +||||++|.+|
T Consensus       118 ~I~efi~g~~l  128 (395)
T d1nw1a_         118 RLEEYIPSRPL  128 (395)
T ss_dssp             EEECCCCEEEC
T ss_pred             eEEEEeccccC
Confidence            89999987655


No 90 
>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}
Probab=96.48  E-value=0.0031  Score=67.06  Aligned_cols=70  Identities=11%  Similarity=0.029  Sum_probs=45.5

Q ss_pred             ceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCc--ccee-----EEEeeCCeEEEEEecCCCC
Q 001902          678 TGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFV--PALY-----ASFQTKTHVCLITDYCPGG  750 (998)
Q Consensus       678 ~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nI--v~l~-----~~~~~~~~~~lV~E~~~gg  750 (998)
                      -..||++.. .+|..|++|+..++..    ...++..|...+..|....|  +...     ..+...+..+.++++++|.
T Consensus        35 EN~vy~v~~-~dg~~~VlK~~rp~~~----s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~  109 (325)
T d1zyla1          35 ENRVYQFQD-EDRRRFVVKFYRPERW----TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGR  109 (325)
T ss_dssp             SSEEEEECC-TTCCCEEEEEECTTTS----CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCE
T ss_pred             cceeEEEEc-CCCCEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCc
Confidence            468999987 6788999999876422    23456668888777742222  1111     1234567789999999774


Q ss_pred             ch
Q 001902          751 EL  752 (998)
Q Consensus       751 sL  752 (998)
                      .+
T Consensus       110 ~~  111 (325)
T d1zyla1         110 QF  111 (325)
T ss_dssp             EC
T ss_pred             CC
Confidence            43


No 91 
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=96.25  E-value=0.0012  Score=58.76  Aligned_cols=76  Identities=13%  Similarity=0.166  Sum_probs=49.6

Q ss_pred             ceEEEEcC-CCCCCCEEEcCHHHHHHcCCChhhhcCCCCccccCCCCCHHHHHHHHHHHhcCCc---EEEEEEEEecC-C
Q 001902          483 KNFVITDP-RLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIRAAIDNQTD---VTVQLINYTKS-G  557 (998)
Q Consensus       483 d~i~i~D~-~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~~p~~~~~~~~~i~~~l~~g~~---~~~e~~~~rkd-G  557 (998)
                      -.++++|. +|+   |++|+++...++|++.++++|++..++.++++.    ..+++.+.....   ..........+ |
T Consensus        18 G~Llvld~~d~~---I~~vS~N~~~lLG~~~~~llG~~l~dll~~~~~----~~i~~~l~~~~~~~~~~~~~~~~~~~~~   90 (114)
T d2oola2          18 GYLFVVSETDLR---IASVSANVEDLLRQPPASLLNVPIAHYLTAASA----ARLTHALHGGDPAAINPIRLDVVTPDGE   90 (114)
T ss_dssp             SEEEEECTTTCB---EEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHH----HHHHHHHCC----CCCSEEEEEEETTEE
T ss_pred             cEEEEEECCCCE---EEEEcCCHHHHhCCChHHHcCCCHHHhCCHHHH----HHHHHHHhcCCcccCCCEEEEEecCCCC
Confidence            45677775 355   999999999999999999999999888877543    445555543322   12233444433 4


Q ss_pred             cEEEEEEE
Q 001902          558 KKFWNLFH  565 (998)
Q Consensus       558 ~~~wv~~~  565 (998)
                      ..|++-++
T Consensus        91 ~~~~~~~H   98 (114)
T d2oola2          91 RAFNGILH   98 (114)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            45555444


No 92 
>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}
Probab=96.20  E-value=0.0057  Score=64.35  Aligned_cols=146  Identities=17%  Similarity=0.148  Sum_probs=77.7

Q ss_pred             cCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCC--ccceeE------EEe
Q 001902          664 LQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPF--VPALYA------SFQ  735 (998)
Q Consensus       664 ~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~n--Iv~l~~------~~~  735 (998)
                      ++...-++.|..|--.+.|++...  +..|++|++....  +   ...+..|..++..|...+  ++.+..      +..
T Consensus        17 lg~~~~~~~i~~G~~N~ny~v~t~--~g~yVLri~~~~~--~---~~~l~~~~~~l~~L~~~g~pvp~pi~~~~g~~~~~   89 (316)
T d2ppqa1          17 VGSLTSYKGIAEGVENSNFLLHTT--KDPLILTLYEKRV--E---KNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGE   89 (316)
T ss_dssp             CCCEEEEEEECC---EEEEEEEES--SCCEEEEEECC--------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEE
T ss_pred             CCCceEeecCCCCcccCeEEEEEC--CCcEEEEEcCCCC--C---HHHHHHHHHHHHhhhhccccccccceecCCCccee
Confidence            445555677888888999999863  3458999986531  1   233444666666663222  211111      122


Q ss_pred             eCCeEEEEEecCCCCchhH--------------HHhh---C-C---CCCC------------------CHHHHHHHHHHH
Q 001902          736 TKTHVCLITDYCPGGELFL--------------LLDR---Q-P---TKVL------------------KEDAVRFYAAEV  776 (998)
Q Consensus       736 ~~~~~~lV~E~~~ggsL~~--------------~l~~---~-~---~~~l------------------~~~~~~~i~~qi  776 (998)
                      .....+.++.++.|.....              .++.   . .   ....                  ........+..+
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  169 (316)
T d2ppqa1          90 LSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPE  169 (316)
T ss_dssp             ETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHH
T ss_pred             eecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhHHHHhhhhcchhHHHHHHHH
Confidence            3456677787776643311              0000   0 0   0000                  001111222223


Q ss_pred             HHHHHHHHH----CCceeccCCCCcEEEecCCcEEEEeccCccc
Q 001902          777 VVALEYLHC----QGIIYRDLKPENVLLQGNGHVSLTDFDLSCL  816 (998)
Q Consensus       777 l~aL~~LH~----~~IiHrDLkP~NILi~~~g~vkL~DFG~a~~  816 (998)
                      ...+...+.    .|+||+|+.++||+++.+...-|+||+.++.
T Consensus       170 ~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         170 IDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             HHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HHhhhccCccccccccccCCcchhhhhcccccceeEeccccccc
Confidence            333333332    3799999999999999887778999999854


No 93 
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=95.90  E-value=0.0023  Score=56.82  Aligned_cols=54  Identities=17%  Similarity=0.195  Sum_probs=40.8

Q ss_pred             cEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHcC
Q 001902          201 TFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGAGTDPEDVAKIRETLQNG  260 (998)
Q Consensus       201 ~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~~~~~~~~~~~~i~~~l~~g  260 (998)
                      .++++|.  .+|+|+|++++...++|++.++++|+++.++++++.    ...+++.+...
T Consensus        19 ~Llvld~--~d~~I~~vS~N~~~lLG~~~~~llG~~l~dll~~~~----~~~i~~~l~~~   72 (114)
T d2oola2          19 YLFVVSE--TDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAAS----AARLTHALHGG   72 (114)
T ss_dssp             EEEEECT--TTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHH----HHHHHHHHCC-
T ss_pred             EEEEEEC--CCCEEEEEcCCHHHHhCCChHHHcCCCHHHhCCHHH----HHHHHHHHhcC
Confidence            3455553  278899999999999999999999999998887643    44555555443


No 94 
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=89.59  E-value=0.24  Score=43.98  Aligned_cols=78  Identities=9%  Similarity=0.000  Sum_probs=51.0

Q ss_pred             ceEEEEcCCCCCCCEEEcCHHHHHHcCCChhhhcCCCCccccCCCCCHHHHHHHHHHHhcCCc--EEEEEEEEecCCcEE
Q 001902          483 KNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIRAAIDNQTD--VTVQLINYTKSGKKF  560 (998)
Q Consensus       483 d~i~i~D~~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~~p~~~~~~~~~i~~~l~~g~~--~~~e~~~~rkdG~~~  560 (998)
                      -.++++|..  ++.|+.++.....++|++.++++|++...+.+..     ...+...+.....  ..........+|..+
T Consensus        36 G~LLald~~--~~~I~~~S~N~~~~lG~~~~~llG~~l~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  108 (127)
T d2o9ca2          36 GALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQ-----WPALQAALPPGCPDALQYRATLDWPAAGHL  108 (127)
T ss_dssp             SEEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHCTTT-----HHHHHHHSCTTCCTTCCEEEEECCSSSSEE
T ss_pred             eEEEEEECC--CCEEEEECCCHHHHhCCChHHHcCCCHHHHCCHH-----HHHHHHHhhhcCcccccceeeeecCCCceE
Confidence            355666753  4459999999999999999999999988877532     1223333333222  233334445677788


Q ss_pred             EEEEEEe
Q 001902          561 WNLFHLQ  567 (998)
Q Consensus       561 wv~~~~s  567 (998)
                      |+.++.+
T Consensus       109 ~~~~Hrs  115 (127)
T d2o9ca2         109 SLTVHRV  115 (127)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8877643


No 95 
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=89.50  E-value=0.081  Score=47.26  Aligned_cols=47  Identities=19%  Similarity=0.084  Sum_probs=35.5

Q ss_pred             ceEEEEcCCCCCCCEEEcCHHHHHHcCCChhhhcCCCCccccCCCCCHH
Q 001902          483 KNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPA  531 (998)
Q Consensus       483 d~i~i~D~~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~~p~~~~~  531 (998)
                      -.++++|..  +++|+.++.....++|+++++++|++...+.+++....
T Consensus        27 G~LLald~~--~~~I~~aS~N~~~~lG~~~~~lLG~~l~~ll~~~~~~~   73 (127)
T d2veaa3          27 GLVVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDP   73 (127)
T ss_dssp             SEEEEEETT--TTEEEEEETTHHHHTSCCTTTSSTTTTTTTSBCC----
T ss_pred             eEEEEEECC--CCEEEEEcCCHHHHhCcChHHHcCCCHHHHCCHHHHHH
Confidence            355666643  44599999999999999999999999888887765443


No 96 
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=88.23  E-value=0.35  Score=42.88  Aligned_cols=75  Identities=11%  Similarity=0.019  Sum_probs=48.5

Q ss_pred             cEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHcCCc--EEEEEEEEecCCCEEE
Q 001902          201 TFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGAGTDPEDVAKIRETLQNGQS--YCGRLLNYKKDGTPFW  278 (998)
Q Consensus       201 ~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~~~~~~~~~~~~i~~~l~~g~~--~~~e~~~~~kdG~~~w  278 (998)
                      .++++|..  +++|+.++....+++|++.++++|+++..+++..     ...+...+.....  ..........+|..+|
T Consensus        37 ~LLald~~--~~~I~~~S~N~~~~lG~~~~~llG~~l~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  109 (127)
T d2o9ca2          37 ALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQ-----WPALQAALPPGCPDALQYRATLDWPAAGHLS  109 (127)
T ss_dssp             EEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHCTTT-----HHHHHHHSCTTCCTTCCEEEEECCSSSSEEE
T ss_pred             EEEEEECC--CCEEEEECCCHHHHhCCChHHHcCCCHHHHCCHH-----HHHHHHHhhhcCcccccceeeeecCCCceEE
Confidence            34555642  6889999999999999999999999999877542     1223333333222  2333444455667666


Q ss_pred             EEee
Q 001902          279 NLLT  282 (998)
Q Consensus       279 ~~~~  282 (998)
                      +.+.
T Consensus       110 ~~~H  113 (127)
T d2o9ca2         110 LTVH  113 (127)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554


No 97 
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=87.94  E-value=0.16  Score=45.28  Aligned_cols=42  Identities=24%  Similarity=0.280  Sum_probs=34.8

Q ss_pred             EEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCcccCCCC
Q 001902          202 FVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGAGT  245 (998)
Q Consensus       202 i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~~~~~  245 (998)
                      ++++|.  .+++|+.+......++|++.++++|+++..++++..
T Consensus        29 LLald~--~~~~I~~aS~N~~~~lG~~~~~lLG~~l~~ll~~~~   70 (127)
T d2veaa3          29 VVVLQE--PDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQ   70 (127)
T ss_dssp             EEEEET--TTTEEEEEETTHHHHTSCCTTTSSTTTTTTTSBCC-
T ss_pred             EEEEEC--CCCEEEEEcCCHHHHhCcChHHHcCCCHHHHCCHHH
Confidence            455563  278899999999999999999999999998877654


No 98 
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=67.64  E-value=32  Score=29.29  Aligned_cols=89  Identities=21%  Similarity=0.302  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhcC-CcEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHcCCcEEEE
Q 001902          188 SDIVKDALSTFQ-QTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGAGTDPEDVAKIRETLQNGQSYCGR  266 (998)
Q Consensus       188 ~~~l~~ild~~~-d~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~~~~~~~~~~~~i~~~l~~g~~~~~e  266 (998)
                      ..+++.+.+... +-|+++|.   +|+++....          .+.+|.++..   ++.        ..++..|..+...
T Consensus        38 ~~~~~~l~~~~~~~~i~v~D~---~G~v~a~~~----------~~~iG~~~~~---~~~--------~~a~~~g~~~~~~   93 (131)
T d1p0za_          38 KALIDPMRSFSDATYITVGDA---SGQRLYHVN----------PDEIGKSMEG---GDS--------DEALINAKSYVSV   93 (131)
T ss_dssp             HHHHHHHHHHSCCSEEEEEET---TSBEEECSS----------GGGTTSBCCS---SCC--------HHHHHHCCCEEEE
T ss_pred             HHHHHHHHHHcCCcEEEEECC---CCCEEEccC----------hhhcCCcccc---cch--------HHHHHcCCcEEEE
Confidence            344555555444 46788888   776776432          2346766432   111        1345556654432


Q ss_pred             EEEEecCCCEEEEEeeeeEEeCCCCCEEEEEEEEecchh
Q 001902          267 LLNYKKDGTPFWNLLTIAPIKDDEGKVLKFIGMQVEVSK  305 (998)
Q Consensus       267 ~~~~~kdG~~~w~~~~~spi~d~~G~v~~~v~i~~DITe  305 (998)
                      .   ...+..  ......||+|.+|+++|++.+..++.+
T Consensus        94 ~---~g~~g~--~~~~~~PI~~~~G~viGvV~Vg~~l~~  127 (131)
T d1p0za_          94 R---KGSLGS--SLRGKSPIQDATGKVIGIVSVGYTIEQ  127 (131)
T ss_dssp             E---EETTEE--EEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred             E---ecCCcc--EEEEEEEEECCCCcEEEEEEEEEEhHH
Confidence            2   223332  335678999999999999999988765


No 99 
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]}
Probab=63.45  E-value=3.9  Score=41.07  Aligned_cols=140  Identities=21%  Similarity=0.281  Sum_probs=74.1

Q ss_pred             cccCCcccccccCCCCceeEEEEEEccCCeEEEEEEeecccccChhHHHHHHHHHHHHHhCCCCCccceeEE--------
Q 001902          662 INLQHFRPIKPLGSGDTGSVHLVELCGSGQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFVPALYAS--------  733 (998)
Q Consensus       662 ~~~~~y~~~~~LG~G~~g~Vy~a~~~~~~~~valK~i~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~l~~~--------  733 (998)
                      ++...++-++.=-.|+-|..|. .  .+.-.++||--.      .-..+.+..++...-.+..|...-+...        
T Consensus        66 ~~l~~~K~i~~s~~Gs~Gv~FV-~--~e~gaiVlK~s~------tta~E~y~~eLAr~LGvpvPqmRvI~~~~~E~~~~~  136 (342)
T d1cjaa_          66 KNLQQFKGIERSEKGTEGLFFV-E--TESGVFIVKRST------NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNML  136 (342)
T ss_dssp             TCGGGEEEEEECCSTTSCEEEE-E--ESSCEEEEECCT------THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHH
T ss_pred             hhHHhhhceEEeecCCceEEEE-E--cCCceEEEecCC------chHHHHHHHHHHHHhCCCCCceEEecCCCHHHHHHH
Confidence            3445555555545555555554 3  245578888522      1222444445544444556655433200        


Q ss_pred             ---------E-----eeCCeEEEEEecCCCCchhHHHhhCCCCCCCHHHHHHHHHHH--HHHHH-HHHHC---CceeccC
Q 001902          734 ---------F-----QTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEV--VVALE-YLHCQ---GIIYRDL  793 (998)
Q Consensus       734 ---------~-----~~~~~~~lV~E~~~ggsL~~~l~~~~~~~l~~~~~~~i~~qi--l~aL~-~LH~~---~IiHrDL  793 (998)
                               .     .-.....++|||++|.+|.+.-.......++...    +.++  +-+++ ++|..   .+++|+-
T Consensus       137 ~~~l~~~e~d~~I~sel~~A~~liMeYvpG~~l~e~~~~~a~~~fs~~~----l~~LGkIiaFDifInN~DR~PL~Wrn~  212 (342)
T d1cjaa_         137 ECLAAIDKSFRVITTLANQANILLMELVRGITLNKLTTTSAPEVLTKST----MQQLGSLMALDVIVNNSDRLPIAWTNE  212 (342)
T ss_dssp             HHHHHHCSSSCHHHHHTTCSEEEEEECCCEEESTTCCSSSHHHHSCHHH----HHHHHHHHHHHHHHTCCSSSCSSSCSC
T ss_pred             HHHhcCCChhHHHHHHHhcccceeeeccCCccccccccccchhhhcHHH----HHHhhhHHHHHHHHcCCccccccccCC
Confidence                     0     0123478999999998886653221111123333    3333  22233 44432   4566632


Q ss_pred             -CCCcEEEecCC-cEEEEeccCc
Q 001902          794 -KPENVLLQGNG-HVSLTDFDLS  814 (998)
Q Consensus       794 -kP~NILi~~~g-~vkL~DFG~a  814 (998)
                       .++|||++.+| .+..+|=|..
T Consensus       213 GN~~Niml~~n~~~~~~IDs~i~  235 (342)
T d1cjaa_         213 GNLDNIMLSERGATVVPIDSKII  235 (342)
T ss_dssp             CCGGGEEEESBTTCEEECSCCCC
T ss_pred             CCccceEEecCCcEEEEecCCcc
Confidence             89999999877 7888886654


No 100
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=52.57  E-value=7.3  Score=33.00  Aligned_cols=75  Identities=12%  Similarity=0.065  Sum_probs=48.7

Q ss_pred             ceEEEEcCCCCCCCEEEcCHHHHHHcCCChhhhcCCCCccccCCCCCHHHHHHHHHHHhcCCcEEEEEEEEecCCcEEEE
Q 001902          483 KNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIRAAIDNQTDVTVQLINYTKSGKKFWN  562 (998)
Q Consensus       483 d~i~i~D~~G~d~~I~~vN~a~~~l~Gy~~eEliG~~~~~l~~p~~~~~~~~~i~~~l~~g~~~~~e~~~~rkdG~~~wv  562 (998)
                      -.++++|+++.   |+.++.....++|++. +.+|+....+..+    .....+.+.+.....+.... ..+.+|..|++
T Consensus        23 G~LLald~~~~---I~~~S~N~~~~lg~~~-~~L~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~d~   93 (113)
T d3c2wa3          23 GALVTLRADGM---VLAASENIQALLGFVA-SPGSYLTQEQVGP----EVLRMLEEGLTGNGPWSNSV-ETRIGEHLFDV   93 (113)
T ss_dssp             EEEEEECTTSB---EEEEETTHHHHTSSCC-CTTCBCCHHHHHH----HHHHHHHHHHSCSSCCCCEE-EECCSSSCEEE
T ss_pred             eEEEEEcCCCe---EEEEcCCHHHHhCCCh-hHhcccHHHHhCH----HHHHHHHhhhhcCCCceeEE-EeccCCeEEEE
Confidence            45677788655   9999999999999985 4677775544432    34455666665554432222 23556777877


Q ss_pred             EEEE
Q 001902          563 LFHL  566 (998)
Q Consensus       563 ~~~~  566 (998)
                      .++.
T Consensus        94 ~~H~   97 (113)
T d3c2wa3          94 IGHS   97 (113)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6664


No 101
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=51.73  E-value=7.8  Score=32.82  Aligned_cols=73  Identities=16%  Similarity=0.144  Sum_probs=46.5

Q ss_pred             cEEEEecCCCCCceEEccHHHHHHcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHcCCcEEEEEEEEecCCCEEEEE
Q 001902          201 TFVVSDATKPDYPIMYASAGFFKMTGYTSKEVVGRNCRFLQGAGTDPEDVAKIRETLQNGQSYCGRLLNYKKDGTPFWNL  280 (998)
Q Consensus       201 ~i~i~D~~g~dG~I~~vN~a~~~l~Gys~eEliG~~~~~l~~~~~~~~~~~~i~~~l~~g~~~~~e~~~~~kdG~~~w~~  280 (998)
                      .++++|.   +++|+.++.....++|++.+ .+|+....++.    ......++..+.....+..... .+.+|..+++.
T Consensus        24 ~LLald~---~~~I~~~S~N~~~~lg~~~~-~L~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~d~~   94 (113)
T d3c2wa3          24 ALVTLRA---DGMVLAASENIQALLGFVAS-PGSYLTQEQVG----PEVLRMLEEGLTGNGPWSNSVE-TRIGEHLFDVI   94 (113)
T ss_dssp             EEEEECT---TSBEEEEETTHHHHTSSCCC-TTCBCCHHHHH----HHHHHHHHHHHSCSSCCCCEEE-ECCSSSCEEEE
T ss_pred             EEEEEcC---CCeEEEEcCCHHHHhCCChh-HhcccHHHHhC----HHHHHHHHhhhhcCCCceeEEE-eccCCeEEEEE
Confidence            3455665   78899999999999999854 67877654443    2344555665655554433333 24567766664


Q ss_pred             ee
Q 001902          281 LT  282 (998)
Q Consensus       281 ~~  282 (998)
                      +.
T Consensus        95 ~H   96 (113)
T d3c2wa3          95 GH   96 (113)
T ss_dssp             EE
T ss_pred             EE
Confidence            44


No 102
>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=42.29  E-value=5.5  Score=36.10  Aligned_cols=49  Identities=27%  Similarity=0.442  Sum_probs=42.0

Q ss_pred             hhhhcccCCCCc--ccccccccchhhhhhhcccccCCCCCCCCCchhhhhc
Q 001902           52 TWMEQRESPEPE--HAKLNSKSSRAEEITSWMALKDPAPQKPSLPPLIQKM  100 (998)
Q Consensus        52 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (998)
                      -|..++|..+-.  ..|+|+.|+.+++-|.|+--|-.--+.+|+|.|++.+
T Consensus        10 ~~~~~~a~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~gk~~k~l~ELL~ey   60 (169)
T d1ydua1          10 YWLGQKANKQFDSVGNDLNSVSTSIEGGTKWLVNKIKGKMQKPLPELLKEY   60 (169)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCTTTTTTSSCHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhhHHHhhhhhccceeEehhhhcCCCCCCHHHHHHhc
Confidence            488899888765  4689999999999999999888888888999988765


No 103
>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K), catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=24.08  E-value=43  Score=34.25  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=22.7

Q ss_pred             ccCCCCcEEEecCCcEEEEeccCcc
Q 001902          791 RDLKPENVLLQGNGHVSLTDFDLSC  815 (998)
Q Consensus       791 rDLkP~NILi~~~g~vkL~DFG~a~  815 (998)
                      +|=+++||||+.+|++.=+|||+..
T Consensus       220 gDRH~~NILi~~~G~l~HIDFG~il  244 (369)
T d1e7ua4         220 GDRHNDNIMISETGNLFHIDFGHIL  244 (369)
T ss_dssp             CCCCGGGEEEETTCCEEECCCCCC-
T ss_pred             CCCCCCeeEEeCCCCEEecchhhhh
Confidence            7889999999999999999999873


Done!