Query 001903
Match_columns 998
No_of_seqs 132 out of 143
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 12:00:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 4.6E-52 1E-56 492.8 25.9 293 13-379 80-397 (894)
2 PLN02784 alpha-amylase 99.9 4.2E-26 9.2E-31 272.5 13.9 129 247-376 69-210 (894)
3 PLN02316 synthase/transferase 97.1 0.013 2.9E-07 74.7 18.3 93 20-126 140-239 (1036)
4 PLN02316 synthase/transferase 95.9 0.25 5.5E-06 63.5 18.2 88 31-126 326-420 (1036)
5 PF03423 CBM_25: Carbohydrate 95.4 0.093 2E-06 48.7 8.7 65 288-373 20-86 (87)
6 PRK06241 phosphoenolpyruvate s 94.8 0.74 1.6E-05 58.7 17.1 178 753-939 649-868 (871)
7 PRK05849 hypothetical protein; 94.7 0.15 3.2E-06 64.0 10.5 173 756-937 571-780 (783)
8 PF03423 CBM_25: Carbohydrate 92.8 0.28 6E-06 45.6 6.3 67 46-124 18-86 (87)
9 PRK08296 hypothetical protein; 92.3 0.16 3.6E-06 61.9 5.1 97 836-939 503-601 (603)
10 PF00391 PEP-utilizers: PEP-ut 90.5 0.21 4.6E-06 45.4 2.8 69 860-932 7-77 (80)
11 PRK05878 pyruvate phosphate di 84.0 1.4 3E-05 53.5 5.2 105 833-944 351-458 (530)
12 PRK05865 hypothetical protein; 82.5 2 4.3E-05 54.8 6.0 97 837-941 740-838 (854)
13 PF11154 DUF2934: Protein of u 82.2 1.4 2.9E-05 35.9 2.9 35 138-175 5-39 (40)
14 PRK06354 pyruvate kinase; Prov 82.1 1.6 3.6E-05 53.5 4.9 96 836-938 486-583 (590)
15 TIGR01418 PEP_synth phosphoeno 79.9 2.1 4.6E-05 54.1 5.0 92 836-934 358-451 (782)
16 PRK11177 phosphoenolpyruvate-p 77.5 11 0.00024 46.4 9.9 77 861-941 152-231 (575)
17 PRK09279 pyruvate phosphate di 77.2 1.6 3.4E-05 55.9 2.7 104 836-942 398-512 (879)
18 TIGR01417 PTS_I_fam phosphoeno 76.8 11 0.00024 46.2 9.7 77 861-941 151-230 (565)
19 PRK06464 phosphoenolpyruvate s 73.1 3 6.6E-05 52.9 3.8 97 836-939 360-461 (795)
20 TIGR01828 pyru_phos_dikin pyru 72.8 2.8 6.1E-05 53.6 3.4 103 836-941 392-505 (856)
21 PRK11377 dihydroxyacetone kina 64.3 37 0.0008 41.0 10.1 74 861-938 394-470 (473)
22 COG3605 PtsP Signal transducti 63.6 30 0.00065 42.8 9.0 91 803-911 265-378 (756)
23 COG0574 PpsA Phosphoenolpyruva 59.7 7.6 0.00017 49.0 3.5 113 796-917 305-419 (740)
24 PRK11061 fused phosphoenolpyru 43.5 20 0.00043 45.5 3.5 76 861-941 319-397 (748)
25 COG1080 PtsA Phosphoenolpyruva 40.3 1.7E+02 0.0036 36.5 10.2 77 861-941 153-232 (574)
26 COG5424 Pyrroloquinoline quino 34.0 47 0.001 36.9 4.0 25 554-579 92-117 (242)
27 PRK03955 hypothetical protein; 31.5 1.6E+02 0.0034 30.1 6.9 96 836-939 6-128 (131)
28 COG3848 Phosphohistidine swive 30.6 1.7E+02 0.0038 29.0 6.7 98 836-940 6-105 (111)
29 PF04190 DUF410: Protein of un 28.0 1.9E+02 0.0041 32.2 7.6 87 466-556 53-158 (260)
30 KOG2122 Beta-catenin-binding p 27.2 1.2E+03 0.025 33.1 14.9 34 713-746 367-400 (2195)
31 TIGR02923 AhaC ATP synthase A1 22.9 1E+03 0.022 26.8 12.3 85 594-698 96-183 (343)
32 KOG2435 Uncharacterized conser 22.8 3.4E+02 0.0073 31.0 8.1 89 264-374 202-295 (323)
33 PF08424 NRDE-2: NRDE-2, neces 20.9 8E+02 0.017 28.0 11.0 121 436-611 19-139 (321)
34 KOG3021 Predicted kinase [Gene 20.8 79 0.0017 35.4 2.8 61 428-506 78-138 (313)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=4.6e-52 Score=492.79 Aligned_cols=293 Identities=25% Similarity=0.477 Sum_probs=242.0
Q ss_pred ceeeeecce----eEEEeecCCCCCceEEEEEEEeecCCceEEEeeeeecCC--CccccCCC--CC------CCcccccc
Q 001903 13 HNFELVEGM----KLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN--TNWFIPAE--HP------KQGALQTP 78 (998)
Q Consensus 13 ~~~~~~~~~----~~~~~~~~~~~G~~~~v~~~~~n~~~~liLHWGv~~~~~--~eW~~P~~--~P------k~~A~~Tp 78 (998)
..|.|.... ++-|-|. ..++.+.+|.+.+. .+++|+|||||++.++ +||.+||+ +| |++|||||
T Consensus 80 k~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~-~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~~A~eT~ 157 (894)
T PLN02784 80 ETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCS-IPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKDYAIETP 157 (894)
T ss_pred eeeeecccceecceeEEEEE-ccCCCcEEEEEEec-CCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecCeEEecc
Confidence 367765554 2334444 56788999999866 7888999999999885 79999999 44 89999999
Q ss_pred cccc--cc-ceEEEEEec-CCcceeEEEEEEeccccchhcccCCcccccCCCCCCCCCCCCCchhhhhhhhhhhcccCCC
Q 001903 79 FVKS--GE-IYLVTIELR-DPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGR 154 (998)
Q Consensus 79 f~~s--G~-~~~v~ie~~-d~~i~aI~FvLkde~~~~W~k~~g~nf~v~L~~~~~~~~~~~ip~~Li~~~ay~rWE~~Gk 154 (998)
|+++ |+ .+.|+|||+ ++++.||+||||+|++|+||++||+||+|+||+......+. +...+.+-.|..
T Consensus 158 f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~~-----~~~~~~~~~~~~--- 229 (894)
T PLN02784 158 LKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGNN-----VGAKKGFGIWPG--- 229 (894)
T ss_pred ccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccce-----eehhhhcCcCcC---
Confidence 9996 44 788888988 89999999999999999999999999999999976655541 333788888888
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHhcCCChHHHHhhhcCCCCCCCCCChhhhhcCCCCc--ccccCcHHHHHhhhcc--Cc
Q 001903 155 PNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPSY--PCRRHDVEKWLQKNYK--GH 230 (998)
Q Consensus 155 p~~~~e~~~~ey~~A~~el~~~l~~G~sl~~l~~~~~~~~t~~~~~~~dql~s~v~r~--~rk~~d~~~~l~k~~~--~~ 230 (998)
.|.+|...+.++.+. ++++|=.+++++. +.+++ |++||+ |+
T Consensus 230 ---------------------------~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 274 (894)
T PLN02784 230 ---------------------------ALGQLSNILLKDEGS---PSKEQDKSSSELDSAAERKG-----LKGFYEEMPI 274 (894)
T ss_pred ---------------------------ccccccchhccCCCC---CcccCCCccccccccccccc-----chhhhhccce
Confidence 888888888887652 2333311222322 22223 788998 88
Q ss_pred cccCCCCchhHHHHHHhhcCCCcceeeeeeecceEEEEEEEee--CCceEEEEEecCCCCeEEEeeeecCCCCcccCCCC
Q 001903 231 VKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKII--SSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPP 308 (998)
Q Consensus 231 ~k~~~~p~~~~a~~~~~~~~~~~vl~kk~f~l~~ei~V~v~~~--~gk~~V~v~Td~~~~lVLHWGV~k~~~~EW~~PP~ 308 (998)
.|+ +.++ +.|.|+|+++ .+|++|+|+||+|++|||||||||++++||++||+
T Consensus 275 ~k~--~~~~------------------------~~~~v~v~~~~~~~k~~v~v~td~~~~vvlHWgV~k~~~~eW~~Pp~ 328 (894)
T PLN02784 275 VKR--VAVD------------------------NSVTVTVRKCPETAKNLVYLETDLPGDVVVHWGVCKDGAKTWEIPPE 328 (894)
T ss_pred eeE--EEec------------------------ceEEEEEecCCCCCceEEEEEcCCCCCEEEEeEeccCCCCcccCCCC
Confidence 777 4454 8899999984 58999999999999999999999998999999999
Q ss_pred CCCCCccccccceeeeeeecccCCCceeeEEEEEccCCceeEEEEEEec-CCcccccCCcceEEecCCCCCc
Q 001903 309 DMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWS-GGSWIKNNGENFFVGLHPMDPK 379 (998)
Q Consensus 309 ~~~P~gSv~~~~A~ET~f~~~~~~~~~~q~veI~l~~d~~~GI~FVLk~-g~~WiKn~G~DF~VpL~~~~~~ 379 (998)
+++|+||++++|||||||++.+++.++++.++| ++.|.||+||||+ +|+||||+|+||||||+..++.
T Consensus 329 ~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~l---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~~ 397 (894)
T PLN02784 329 PHPPETSLFKNKALQTMLQQKDDGNGSSGLFSL---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSL 397 (894)
T ss_pred CCCCCcceecccccccccccccCCCcceEEEec---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchhcc
Confidence 999999999999999999999998888988777 7899999999999 7999999999999999987544
No 2
>PLN02784 alpha-amylase
Probab=99.93 E-value=4.2e-26 Score=272.46 Aligned_cols=129 Identities=25% Similarity=0.490 Sum_probs=117.3
Q ss_pred hhcCCCcceeeeeeecc-eE-----EEEEE-EeeCCceEEEEEecCCCCeEEEeeeecCC--CCcccCCCCCCCCCcccc
Q 001903 247 NSLGADNVISRQSYHMD-HE-----IVVLS-KIISSDYHILVAVNMKGAAILHWGISKCS--PGEWLSPPPDMLPEKSKM 317 (998)
Q Consensus 247 ~~~~~~~vl~kk~f~l~-~e-----i~V~v-~~~~gk~~V~v~Td~~~~lVLHWGV~k~~--~~EW~~PP~~~~P~gSv~ 317 (998)
++.+.++|+++|+|+|+ .| |.|++ ++++|+++|+|+||+|++|||||||++++ ++||.+||++++||||+.
T Consensus 69 ~~~~~~~v~~kk~F~v~~~e~ve~~~~v~l~~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~ 148 (894)
T PLN02784 69 ETAQSDDVFFKETFPVKRTEKVEGKIYVRLEEKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIA 148 (894)
T ss_pred eccccccceeeeeeeecccceecceeEEEEEccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcEE
Confidence 45568999999999999 66 44444 77899999999999999999999999987 699999999999999999
Q ss_pred c-cceeeeeeecccCCCceeeE-EEEEccCCceeEEEEEEec--CCcccccCCcceEEecCCC
Q 001903 318 V-AGACQTYFTDIATARGSFQM-VDVNLQKRKFVGIQFVIWS--GGSWIKNNGENFFVGLHPM 376 (998)
Q Consensus 318 ~-~~A~ET~f~~~~~~~~~~q~-veI~l~~d~~~GI~FVLk~--g~~WiKn~G~DF~VpL~~~ 376 (998)
+ ++||||||++.+.++..+++ |+|+++ +.|+||+||||+ +|+||||||+||||||+..
T Consensus 149 ~~~~A~eT~f~~~s~~~~~~~v~iel~l~-~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~ 210 (894)
T PLN02784 149 IKDYAIETPLKKSSEGDSFYEVTIDLDPN-SSIAAINFVLKDEETGAWYQHKGRDFKVPLVDD 210 (894)
T ss_pred ecCeEEeccccccccCCcceeEEEEEeeC-CceeeEEEEEEeCCCCchhhcCCccEEEecccc
Confidence 8 89999999999888888886 899885 899999999999 6999999999999999875
No 3
>PLN02316 synthase/transferase
Probab=97.13 E-value=0.013 Score=74.73 Aligned_cols=93 Identities=15% Similarity=0.310 Sum_probs=58.3
Q ss_pred ceeEEEeecCCCCCceEEEEEEEeec----CCceEEEeeeeecCCCccccCCCCCCCcccccccccc---ccceEEEEEe
Q 001903 20 GMKLQINASGSSIGRNVRVQFQLRNC----ARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKS---GEIYLVTIEL 92 (998)
Q Consensus 20 ~~~~~~~~~~~~~G~~~~v~~~~~n~----~~~liLHWGv~~~~~~eW~~P~~~Pk~~A~~Tpf~~s---G~~~~v~ie~ 92 (998)
|..+-|.=.-...|+.++|-+-..+. ..++++|=|. ..|...+ .-++++|+ ||.-..++.+
T Consensus 140 ~~~~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gf-----N~W~~~~-------f~~~~~k~~~~g~ww~~~v~V 207 (1036)
T PLN02316 140 GNKLFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAF-----NGWRWKS-------FTERLEKTELGGDWWSCKLHI 207 (1036)
T ss_pred CCeEEeccccccCCCeeEEEEcCCCCccCCCCceEEEecc-----ccccccc-------cceeccccccCCCeEEEEEec
Confidence 33344444444566676666655442 3456667433 4565532 22333333 7777776666
Q ss_pred cCCcceeEEEEEEeccccchhcccCCcccccCCC
Q 001903 93 RDPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPE 126 (998)
Q Consensus 93 ~d~~i~aI~FvLkde~~~~W~k~~g~nf~v~L~~ 126 (998)
++. .+.++||+.|+ .+.|=+|+|.||+++.+.
T Consensus 208 p~~-A~~ldfVf~~g-~~~yDNN~~~Df~~~V~~ 239 (1036)
T PLN02316 208 PKE-AYKMDFVFFNG-QNVYDNNDHKDFCVEIEG 239 (1036)
T ss_pred Ccc-ceEEEEEEeCC-ccccccCCCCceEEEeCC
Confidence 655 45599999998 568888899999999863
No 4
>PLN02316 synthase/transferase
Probab=95.90 E-value=0.25 Score=63.54 Aligned_cols=88 Identities=14% Similarity=0.356 Sum_probs=55.2
Q ss_pred CCCceEEEEEEEee----cCCceEEEeeeeecCCCccccCCCCCCCccccccccccccceEEEEEecCCcceeEEEEEEe
Q 001903 31 SIGRNVRVQFQLRN----CARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKD 106 (998)
Q Consensus 31 ~~G~~~~v~~~~~n----~~~~liLHWGv~~~~~~eW~~P~~~Pk~~A~~Tpf~~sG~~~~v~ie~~d~~i~aI~FvLkd 106 (998)
..|.+++|-.--.| .+.++.+|||.. .|.-....+ ..-+.++ .+.|+.-..+|.++. ..+-+.||+.|
T Consensus 326 ~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N-----~W~~~~~~~-~~~~~~~-~~~g~ww~a~v~vP~-~A~~mDfVFsd 397 (1036)
T PLN02316 326 KAGDTVKLYYNRSSGPLAHSTEIWIHGGYN-----NWIDGLSIV-EKLVKSE-EKDGDWWYAEVVVPE-RALVLDWVFAD 397 (1036)
T ss_pred CCCCEEEEEECCCCCCCCCCCcEEEEEeEc-----CCCCCCccc-ceeeccc-CCCCCEEEEEEecCC-CceEEEEEEec
Confidence 44555555444333 377899999995 454433311 0112222 113776666655553 36789999999
Q ss_pred cc---ccchhcccCCcccccCCC
Q 001903 107 GI---HDRWLRLNHGNFRIEIPE 126 (998)
Q Consensus 107 e~---~~~W~k~~g~nf~v~L~~ 126 (998)
+. .+.|=+++|.|||++.+.
T Consensus 398 g~~~~~~~yDNn~~~Dyh~~v~~ 420 (1036)
T PLN02316 398 GPPGNARNYDNNGRQDFHAIVPN 420 (1036)
T ss_pred CCcccccccccCCCcceeeecCC
Confidence 73 467888899999999874
No 5
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.36 E-value=0.093 Score=48.74 Aligned_cols=65 Identities=26% Similarity=0.563 Sum_probs=37.5
Q ss_pred CeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecccC-CCceeeEEEEEccCCceeEEEEEEecC-CcccccC
Q 001903 288 AAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIAT-ARGSFQMVDVNLQKRKFVGIQFVIWSG-GSWIKNN 365 (998)
Q Consensus 288 ~lVLHWGV~k~~~~EW~~PP~~~~P~gSv~~~~A~ET~f~~~~~-~~~~~q~veI~l~~d~~~GI~FVLk~g-~~WiKn~ 365 (998)
.+.||+|... |..+|. .+|++... ....+-..+|+++.+.. .|.||++++ ++|=+|+
T Consensus 20 ~v~~~~G~n~-----W~~~~~---------------~~m~~~~~~~~~~~~~~tv~vP~~a~-~~dfvF~dg~~~wDNN~ 78 (87)
T PF03423_consen 20 NVHLHGGFNR-----WTHVPG---------------FGMTKMCVPDEGGWWKATVDVPEDAY-VMDFVFNDGAGNWDNNN 78 (87)
T ss_dssp EEEEEETTS------B-SSS----------------EE-EEESS---TTEEEEEEE--TTTS-EEEEEEE-SSS-EESTT
T ss_pred cEEEEecCCC-----CCcCCC---------------CCcceeeeeecCCEEEEEEEEcCCce-EEEEEEcCCCCcEeCCC
Confidence 4789999754 987764 22222110 00113345677766655 799999996 8999999
Q ss_pred CcceEEec
Q 001903 366 GENFFVGL 373 (998)
Q Consensus 366 G~DF~VpL 373 (998)
|.||+++.
T Consensus 79 g~nY~~~V 86 (87)
T PF03423_consen 79 GANYHFPV 86 (87)
T ss_dssp TS-EEEES
T ss_pred CccEEEEc
Confidence 99999985
No 6
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=94.77 E-value=0.74 Score=58.70 Aligned_cols=178 Identities=16% Similarity=0.079 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHhhCchHHHHHhhh---CC--cchhhcchhHHHhhcc----hhHHHHH
Q 001903 753 AQWALQAKAILDRLQLVLAE------RSQTYQKKFQPSVKYLGCLL---GV--EKYVIDNFTEELVRAQ----SEAVLSI 817 (998)
Q Consensus 753 ~~wALr~kA~lDR~rr~~~~------~~d~~~~~~q~~A~~LG~al---Gi--d~~~v~~F~Ee~IRa~----~~f~lS~ 817 (998)
......++..+.++|.++.. +....+..+-.....||+.| |+ ++.-|=-++-++|++- ... -.+
T Consensus 649 ~~~~~~~~~~l~~ar~~~~~RE~~k~~~~~~~~~~R~~~~~~g~~l~~~G~L~~~~Dif~L~~~El~~~~~g~~~~-~~~ 727 (871)
T PRK06241 649 EQKAKETKRMISRLRNFIGYREYPKYGRIRRYGIYKQALLKEAEQLVQAGVLAEPEDIFYLTFEELREVVRTNKLD-YEL 727 (871)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHCCCCCChhheeeecHHHHHHHHcCCccc-HHH
Confidence 33456677778877777653 33455566667788888888 88 4444444444445421 111 112
Q ss_pred HHhhhhHHHHHHh----------c----------CCCc-----eEeecceeeeEEEEecchhcccccccCCCEEEEEecc
Q 001903 818 LINRFEPVLRKVA----------N----------LGCW-----QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRI 872 (998)
Q Consensus 818 Ll~~L~~~lR~~a----------~----------~~~W-----qvIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v 872 (998)
+..|=...-+... + ..+. ..+|+|.+.|.+.++..-.+. ....+.||++...
T Consensus 728 i~~rk~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~ 804 (871)
T PRK06241 728 IAKRKEEYELYEKLTPPRVMTSDGEIITGKYKRENLPAGALIGLPVSSGVVEGRARVILNPEDA---DLEKGDILVTAFT 804 (871)
T ss_pred HHHHHHHHHHhhcCCCCceecCCCccccccccccCCCCCceeEeecCCCeEEEEEEEECCHHHc---CCCCCeEEEecCC
Confidence 2211111111000 0 0111 127889999999988776554 3567789999999
Q ss_pred CcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEeechHHHHHHHhhcCCcEEEEEccCceEE
Q 001903 873 TGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLII 939 (998)
Q Consensus 873 ~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~~~~~~l~~~~Gk~V~l~~ss~~v~~ 939 (998)
++ ...| ..+.|||+-.-. .+||.||.||..++|.+.+-... ... -..|..|.|....+.|.+
T Consensus 805 ~p-~~~~~~~~~~giv~~~Gg-~~sH~aIvare~gIPavv~~~~~-~~~--l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 805 DP-GWTPLFVSIKGLVTEVGG-LMTHGAVIAREYGIPAVVGVENA-TKL--IKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred CH-HHHHHHHhceEEEEcCCC-cchHHHHHHHhcCCCEEEccccH-Hhh--cCCCCEEEEECCCCEEEE
Confidence 98 4566 488899885544 78999999999999988765332 221 127899988877655543
No 7
>PRK05849 hypothetical protein; Provisional
Probab=94.66 E-value=0.15 Score=63.97 Aligned_cols=173 Identities=12% Similarity=0.087 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHhhCchHHHHHhhhCCcchhhcchhHHHhhcchhHH----HHHHHhhh-h-
Q 001903 756 ALQAKAILDRLQLVLAE------RSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAV----LSILINRF-E- 823 (998)
Q Consensus 756 ALr~kA~lDR~rr~~~~------~~d~~~~~~q~~A~~LG~alGid~~~v~~F~Ee~IRa~~~f~----lS~Ll~~L-~- 823 (998)
...++..++++|.+++. ..-..+...-.....+|..||+++.-|--.+=+.|++...-. ....+..+ .
T Consensus 571 ~~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~~ 650 (783)
T PRK05849 571 NIDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIKR 650 (783)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHHH
Confidence 35567788888877765 244445555556677899999977766555555555322110 01111110 0
Q ss_pred -HHHHH----------------------HhcCCCceEeecceeeeEEEEecchhcccccccCCCEEEEEeccCcc-ccc-
Q 001903 824 -PVLRK----------------------VANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGE-EEI- 878 (998)
Q Consensus 824 -~~lR~----------------------~a~~~~WqvIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~Ge-EEI- 878 (998)
+.... ...-+ ..||||.+.|.|.+|..-. ...-+..||++...+=. --+
T Consensus 651 rk~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~--n~is~g~v~g~v~v~~~~~----~~~~~G~Ilv~~~tdPg~~~lf 724 (783)
T PRK05849 651 NKQEYELTRSLKLPPLICSADDVYSFEIHESKP--NFITQKRVEATVADLDNDN----DDDLEGKIVCIENADPGYDWLF 724 (783)
T ss_pred HHHHHHHHhcCCCCCeeccCCccccccccCCCC--CCccCCEEEEEEEEecChh----hcCCCCCEEEeCCCCccchHHH
Confidence 00000 00111 2489999999999887542 12235678888887742 223
Q ss_pred CCCcEEEeCCCCCCcccceeeeeccCceeEEEeechHHHHHHHhhcCCcEEEEEccCce
Q 001903 879 PVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (998)
Q Consensus 879 p~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~~~~~~l~~~~Gk~V~l~~ss~~v 937 (998)
..++.|+||..-= ..||.||+||..++|-+..-.....+.+ ..|+.|.+....+.|
T Consensus 725 ~~~i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v 780 (783)
T PRK05849 725 TKGIAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRI 780 (783)
T ss_pred hhheeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEE
Confidence 2489999995532 6799999999999999887644323332 258888887665444
No 8
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=92.80 E-value=0.28 Score=45.62 Aligned_cols=67 Identities=24% Similarity=0.483 Sum_probs=39.9
Q ss_pred CCceEEEeeeeecCCCccccCCC-CC-CCccccccccccccceEEEEEecCCcceeEEEEEEeccccchhcccCCccccc
Q 001903 46 ARTWILHWGFLYRGNTNWFIPAE-HP-KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIE 123 (998)
Q Consensus 46 ~~~liLHWGv~~~~~~eW~~P~~-~P-k~~A~~Tpf~~sG~~~~v~ie~~d~~i~aI~FvLkde~~~~W~k~~g~nf~v~ 123 (998)
+..+.+|+|. +.|..++. .| +..+ + ..++....+|.++.. ...|+||++|. .+.|=+++|.||+++
T Consensus 18 ~~~v~~~~G~-----n~W~~~~~~~m~~~~~---~--~~~~~~~~tv~vP~~-a~~~dfvF~dg-~~~wDNN~g~nY~~~ 85 (87)
T PF03423_consen 18 APNVHLHGGF-----NRWTHVPGFGMTKMCV---P--DEGGWWKATVDVPED-AYVMDFVFNDG-AGNWDNNNGANYHFP 85 (87)
T ss_dssp S-EEEEEETT-----S-B-SSS-EE-EEESS--------TTEEEEEEE--TT-TSEEEEEEE-S-SS-EESTTTS-EEEE
T ss_pred CCcEEEEecC-----CCCCcCCCCCcceeee---e--ecCCEEEEEEEEcCC-ceEEEEEEcCC-CCcEeCCCCccEEEE
Confidence 4568899996 57987765 22 1111 1 115667777777544 44799999998 899999999999987
Q ss_pred C
Q 001903 124 I 124 (998)
Q Consensus 124 L 124 (998)
.
T Consensus 86 V 86 (87)
T PF03423_consen 86 V 86 (87)
T ss_dssp S
T ss_pred c
Confidence 4
No 9
>PRK08296 hypothetical protein; Provisional
Probab=92.25 E-value=0.16 Score=61.94 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=71.8
Q ss_pred eEeecceeeeEEEEecchhcccccccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEeec
Q 001903 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (998)
Q Consensus 836 qvIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d 913 (998)
..+|||.+.|.+.+|....... ....+.||++...+-. .+| ..+.||||-.-= .+||.||-||+.++|-+.+-.
T Consensus 503 ~~~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~tdP~-~~~~~~~~~GiVte~Gg-~~SHaAIvARe~GIPaVvgv~ 578 (603)
T PRK08296 503 FAASPGVVEGPARVIRSADELS--EVQEGEILVCPVTSPS-WAPIFAKIKATVTDIGG-VMSHAAIVCREYGLPAVVGTG 578 (603)
T ss_pred eecCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCCHH-HHHHHHHheEEEEecCC-CcchHHHHHHHcCCCEEEcCc
Confidence 4578999999999988866542 3567889998887744 466 588999984432 689999999999999888764
Q ss_pred hHHHHHHHhhcCCcEEEEEccCceEE
Q 001903 914 QNILRNLRLKEGKAVSIRLKSTNLII 939 (998)
Q Consensus 914 ~~~~~~l~~~~Gk~V~l~~ss~~v~~ 939 (998)
.. ... -..|..|.|..+++.|.+
T Consensus 579 ~a-t~~--l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 579 NA-TKR--IKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred cH-hhh--cCCCCEEEEECCCCEEEE
Confidence 42 221 237999998887766543
No 10
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=90.48 E-value=0.21 Score=45.36 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=49.0
Q ss_pred ccCCCEEEEEeccCccccc--CCCcEEEeCCCCCCcccceeeeeccCceeEEEeechHHHHHHHhhcCCcEEEEE
Q 001903 860 VYRRPTIIIASRITGEEEI--PVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 932 (998)
Q Consensus 860 ~~~~PtILl~~~v~GeEEI--p~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~~~~~~l~~~~Gk~V~l~~ 932 (998)
..++|+||+++..+-.+-. ..++.|||+-.- ..+||.||-||..++|.+..-.. ....+ ..|..|.+..
T Consensus 7 ~~~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~G-g~~SH~aIlAr~~giP~ivg~~~-~~~~i--~~g~~v~lDg 77 (80)
T PF00391_consen 7 KLPEGVILVAEELTPSDLALDLQRVAGIVTEEG-GPTSHAAILARELGIPAIVGVGD-ATEAI--KDGDWVTLDG 77 (80)
T ss_dssp CTTSTEEEEESS--TTCHHSHHTTSSEEEESSS-STTSHHHHHHHHTT-EEEESTTT-HHHHS--CTTEEEEEET
T ss_pred cCCCCEEEEECCCCHHHHhcchhheEEEEEEcC-CccchHHHHHHHcCCCEEEeecc-Hhhcc--CCCCEEEEEC
Confidence 4568899999998877665 259999999554 26899999999999999998863 22222 2577777644
No 11
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=83.98 E-value=1.4 Score=53.50 Aligned_cols=105 Identities=12% Similarity=0.121 Sum_probs=70.9
Q ss_pred CCceEeecceeeeEEEE-ecchhcccccccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEE
Q 001903 833 GCWQVISPVEVCGFITS-VNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFA 909 (998)
Q Consensus 833 ~~WqvIs~g~a~G~l~~-v~~L~~vq~~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fa 909 (998)
..=..+|||.+.|.|+. .++... .....++.||++...+-+. ++ ..+.||||-.-= ..||.||-||..++|-+
T Consensus 351 ~~G~~as~G~a~G~V~~~~~~~~~--~~~~~~g~ILV~~~t~P~~-~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~V 426 (530)
T PRK05878 351 AKGLPACPGVVSGTAYTDVDEALD--AADRGEPVILVRDHTRPDD-VHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVAV 426 (530)
T ss_pred ccCeeccCceEEEEEEECHHHHHH--HhhccCCEEEEECCCCHHH-HhhhHhheEEEEccCC-ccchHHHHHHHcCCCEE
Confidence 34456899999999853 222211 1234566888877665444 66 378899995432 67999999999999999
Q ss_pred EeechHHHHHHHhhcCCcEEEEEccCceEEeeccC
Q 001903 910 TCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISS 944 (998)
Q Consensus 910 tc~d~~~~~~l~~~~Gk~V~l~~ss~~v~~~~~~~ 944 (998)
.+-...... + ..|..|.|......|--..++.
T Consensus 427 vG~~~~~~~-~--~~G~~VtvDg~~G~V~~G~~~~ 458 (530)
T PRK05878 427 VGCGAGVAA-A--LAGKEITVDGYEGEVRQGVLAL 458 (530)
T ss_pred Ecccchhhc-c--CCCCEEEEECCCCEEEeCcccC
Confidence 876543322 2 3699999988776665555433
No 12
>PRK05865 hypothetical protein; Provisional
Probab=82.50 E-value=2 Score=54.85 Aligned_cols=97 Identities=16% Similarity=0.065 Sum_probs=70.9
Q ss_pred EeecceeeeEEEEecchhcccccccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEeech
Q 001903 837 VISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQ 914 (998)
Q Consensus 837 vIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~ 914 (998)
.+|+|.+.|.+.+|. +-.......+.||++...+-.. +| ..+.|||+-.-= .+||.||=||..++|.+.+-..
T Consensus 740 ~~s~G~v~G~vrvv~---~~~~~~~~~g~ILVa~~tdp~~-~~~~~~a~giVte~Gg-~~SH~AIvARe~gIPaVvgv~~ 814 (854)
T PRK05865 740 GVCGGRVRGRVRIVR---PETIDDLQPGEILVAEVTDVGY-TAAFCYAAAVVTELGG-PMSHAAVVAREFGFPCVVDAQG 814 (854)
T ss_pred eccCCccEEEEEEec---HHHhhhcCCCeEEEeCCCCHHH-HHHHHHheEEEeccCC-CccHHHHHHHHcCCCEEEcccc
Confidence 478999999999986 2222456788999998866333 44 588899984332 6899999999999999988754
Q ss_pred HHHHHHHhhcCCcEEEEEccCceEEee
Q 001903 915 NILRNLRLKEGKAVSIRLKSTNLIISD 941 (998)
Q Consensus 915 ~~~~~l~~~~Gk~V~l~~ss~~v~~~~ 941 (998)
.. .. -..|..|.+..+.+.|.+-+
T Consensus 815 at-~~--l~dG~~V~vDg~~G~V~~l~ 838 (854)
T PRK05865 815 AT-RF--LPPGALVEVDGATGEIHVVE 838 (854)
T ss_pred Hh-hc--CCCCCEEEEECCCcEEEEec
Confidence 32 11 13799999988877776554
No 13
>PF11154 DUF2934: Protein of unknown function (DUF2934); InterPro: IPR021327 This bacterial family of proteins has no known function.
Probab=82.18 E-value=1.4 Score=35.90 Aligned_cols=35 Identities=40% Similarity=0.763 Sum_probs=27.8
Q ss_pred hhhhhhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHH
Q 001903 138 KDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQL 175 (998)
Q Consensus 138 ~~Li~~~ay~rWE~~Gkp~~~~e~~~~ey~~A~~el~~ 175 (998)
++.|..+||-.||+.|+|...++ +...+|.++|..
T Consensus 5 e~~Ir~rAY~lwe~~G~p~G~~~---~~W~~AE~el~~ 39 (40)
T PF11154_consen 5 EERIRERAYELWEERGRPEGRDE---EDWLEAERELDA 39 (40)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcH---HHHHHHHHHHHc
Confidence 56788999999999999987765 566777776653
No 14
>PRK06354 pyruvate kinase; Provisional
Probab=82.11 E-value=1.6 Score=53.46 Aligned_cols=96 Identities=14% Similarity=0.176 Sum_probs=72.6
Q ss_pred eEeecceeeeEEEEecchhcccccccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEeec
Q 001903 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (998)
Q Consensus 836 qvIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d 913 (998)
+-.+||.+.|.+..+....+. ..+..|.||++...+- +.+| ..+.|||+..-= ..||.|+=||..++|-+.+-.
T Consensus 486 ~~as~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~ 561 (590)
T PRK06354 486 QGIGRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVK 561 (590)
T ss_pred cccccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEecc
Confidence 456889999999998876553 4678899999999887 6677 489999984432 679999999999999998865
Q ss_pred hHHHHHHHhhcCCcEEEEEccCceE
Q 001903 914 QNILRNLRLKEGKAVSIRLKSTNLI 938 (998)
Q Consensus 914 ~~~~~~l~~~~Gk~V~l~~ss~~v~ 938 (998)
... .. -..|..|.+....+.|.
T Consensus 562 ~~~-~~--l~~G~~v~vDg~~G~V~ 583 (590)
T PRK06354 562 NAT-SL--IKDGQIITVDAARGVVY 583 (590)
T ss_pred chh-hc--cCCCCEEEEECCCCEEE
Confidence 432 11 13688888877665443
No 15
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=79.92 E-value=2.1 Score=54.13 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=69.3
Q ss_pred eEeecceeeeEEEEecchhcccccccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEeec
Q 001903 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (998)
Q Consensus 836 qvIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d 913 (998)
.-+|||.++|.|..+..-.+.. ....+.||++...+-+. +| ..+.||||-.-= ..||.||-||+.++|.+.+-.
T Consensus 358 ~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~p~~-~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavvg~~ 433 (782)
T TIGR01418 358 RAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTDPDW-EPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVVGTG 433 (782)
T ss_pred cccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCCHHH-HHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEEccc
Confidence 4579999999999998877753 46778899988776644 66 499999995432 679999999999999887653
Q ss_pred hHHHHHHHhhcCCcEEEEEcc
Q 001903 914 QNILRNLRLKEGKAVSIRLKS 934 (998)
Q Consensus 914 ~~~~~~l~~~~Gk~V~l~~ss 934 (998)
. ....+ ..|..|.|....
T Consensus 434 ~-~~~~l--~~G~~v~vDg~~ 451 (782)
T TIGR01418 434 D-ATKTL--KDGMEVTVDCAE 451 (782)
T ss_pred c-hhhcc--cCCCEEEEEcCC
Confidence 3 22222 258888887776
No 16
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=77.52 E-value=11 Score=46.37 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=56.6
Q ss_pred cCCCEEEEEeccCccc--ccC-CCcEEEeCCCCCCcccceeeeeccCceeEEEeechHHHHHHHhhcCCcEEEEEccCce
Q 001903 861 YRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (998)
Q Consensus 861 ~~~PtILl~~~v~GeE--EIp-~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~~~~~~l~~~~Gk~V~l~~ss~~v 937 (998)
+..|+||++...+-.+ .++ .++.|+||..-= ..||.+|-||+.++|-+.+-.. ....+ ..|..|.|....+.|
T Consensus 152 ~~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~~-~~~~~--~~G~~vilDg~~G~v 227 (575)
T PRK11177 152 IQEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTGN-ITKQV--KNGDYLILDAVNNQI 227 (575)
T ss_pred CCCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcChh-HHhhc--cCCCEEEEECCCCEE
Confidence 5788999999988766 333 589999995532 5799999999999998877653 33322 258888888777666
Q ss_pred EEee
Q 001903 938 IISD 941 (998)
Q Consensus 938 ~~~~ 941 (998)
.+..
T Consensus 228 ~~~P 231 (575)
T PRK11177 228 YVNP 231 (575)
T ss_pred EECC
Confidence 5543
No 17
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=77.20 E-value=1.6 Score=55.87 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=67.4
Q ss_pred eEeecceeeeEEEEecchhcccccccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEeec
Q 001903 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (998)
Q Consensus 836 qvIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d 913 (998)
..+|||.++|.|+....=. .+-....+|.||+... ..-|+|+ ..+.||||..-= ..||.||=||+.++|-+.+-.
T Consensus 398 ~~aspGaa~G~v~~~~~~a-~~~~~~~~~~ILV~~e-t~P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~VvG~~ 474 (879)
T PRK09279 398 LPASPGAATGKIVFTADEA-EALAARGEKVILVRPE-TSPEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCVVGAG 474 (879)
T ss_pred cccCCCeEEEEEEEChHHH-HHhhccCCCEEEEECC-CCHHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEEeccC
Confidence 4579999999997642211 1112345666666655 4455577 378899995432 679999999999999987754
Q ss_pred hHHHHH---------HHhhcCCcEEEEEccCceEEeec
Q 001903 914 QNILRN---------LRLKEGKAVSIRLKSTNLIISDI 942 (998)
Q Consensus 914 ~~~~~~---------l~~~~Gk~V~l~~ss~~v~~~~~ 942 (998)
.-.++. -.-..|..|.|..+.+.|-....
T Consensus 475 ~~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g~~ 512 (879)
T PRK09279 475 ALRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLGEV 512 (879)
T ss_pred cceEecccCEEEECCEEecCCCEEEEECCCCEEEECCc
Confidence 432211 11236888888887766655543
No 18
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=76.80 E-value=11 Score=46.15 Aligned_cols=77 Identities=22% Similarity=0.152 Sum_probs=56.2
Q ss_pred cCCCEEEEEeccCccccc---CCCcEEEeCCCCCCcccceeeeeccCceeEEEeechHHHHHHHhhcCCcEEEEEccCce
Q 001903 861 YRRPTIIIASRITGEEEI---PVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (998)
Q Consensus 861 ~~~PtILl~~~v~GeEEI---p~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~~~~~~l~~~~Gk~V~l~~ss~~v 937 (998)
...|.||++...+=.+=+ +.++.||+|..-= ..||.+|=||+.++|.+.+-... ...+ ..|..|.|...++.|
T Consensus 151 ~~~~~IlVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~~~-~~~~--~~G~~v~vDg~~G~v 226 (565)
T TIGR01417 151 IQDEVILVAEDLTPSETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTKSV-TSQV--KNGDTVIIDGVKGIV 226 (565)
T ss_pred CCCCeEEEecCCCHHHHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcchhH-HhhC--CCCCEEEEECCCCEE
Confidence 567899999887666554 2589999995432 57999999999999988776433 2222 268888888877666
Q ss_pred EEee
Q 001903 938 IISD 941 (998)
Q Consensus 938 ~~~~ 941 (998)
.+..
T Consensus 227 ~~~P 230 (565)
T TIGR01417 227 IFNP 230 (565)
T ss_pred EeCC
Confidence 6543
No 19
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=73.10 E-value=3 Score=52.88 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=68.2
Q ss_pred eEeecceeeeEEEEecchhcccccccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEeec
Q 001903 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (998)
Q Consensus 836 qvIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d 913 (998)
..++||.++|.+..+..-.+.. ....+.||++...+= ++++ ..+.||||-.-= ..||.||-||+.++|.+..-.
T Consensus 360 ~~~~~G~~~G~v~v~~~~~~~~--~~~~g~ILV~~~~~p-~~~~~l~~~~givt~~Gg-~tSH~AilAR~lgIPavvg~~ 435 (795)
T PRK06464 360 RAIGPGIGSGKVRVILDISEMD--KVQPGDVLVTDMTDP-DWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVGTG 435 (795)
T ss_pred cccCCCceeeEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHHHhheEEEEcCCC-CcchHHHHHHHcCCCEEEccC
Confidence 4578899999999988876654 456678888877665 4555 589999995532 679999999999999876543
Q ss_pred hHHHHHHHhhcCCcEEE---EEccCceEE
Q 001903 914 QNILRNLRLKEGKAVSI---RLKSTNLII 939 (998)
Q Consensus 914 ~~~~~~l~~~~Gk~V~l---~~ss~~v~~ 939 (998)
. ....+ ..|..|.| ....+.|..
T Consensus 436 ~-~~~~l--~~G~~v~v~~~Dg~~G~v~~ 461 (795)
T PRK06464 436 N-ATEVL--KDGQEVTVSCAEGDTGYVYE 461 (795)
T ss_pred c-cccee--cCCCEEEEEeccCCCcEEEe
Confidence 2 22211 35888887 554444433
No 20
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=72.80 E-value=2.8 Score=53.59 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=68.1
Q ss_pred eEeecceeeeEEEEecchhcccccccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEeec
Q 001903 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (998)
Q Consensus 836 qvIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d 913 (998)
..+|||.++|+|+.+.+-..- -....+|.||++...+-+ +++ ..+.||||..-= ..||.||-||+.++|-+.+-.
T Consensus 392 ~~aspG~a~G~v~~~~~~a~~-~~~~~~~~ILV~~~t~P~-d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~VvG~~ 468 (856)
T TIGR01828 392 LPASPGAATGKIVFSAEDAVE-LAEKGKKVILVREETSPE-DIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVSGCE 468 (856)
T ss_pred cccCCCeEEEEEEEchHHHHH-HhhcCCCEEEEECCCCHH-HHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEEccc
Confidence 457999999999776321111 112456778887766544 455 378999995532 679999999999999988764
Q ss_pred hHHHHH---------HHhhcCCcEEEEEccCceEEee
Q 001903 914 QNILRN---------LRLKEGKAVSIRLKSTNLIISD 941 (998)
Q Consensus 914 ~~~~~~---------l~~~~Gk~V~l~~ss~~v~~~~ 941 (998)
.-.++. -.-..|..|.+..+.+.|-...
T Consensus 469 ~~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g~ 505 (856)
T TIGR01828 469 ELKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLGE 505 (856)
T ss_pred ccccccccceeeeCCeEecCCCEEEEECCCCEEEECC
Confidence 433221 1223688888887766665443
No 21
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=64.31 E-value=37 Score=41.03 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=52.2
Q ss_pred cCCCEEEEEeccCcccccC---CCcEEEeCCCCCCcccceeeeeccCceeEEEeechHHHHHHHhhcCCcEEEEEccCce
Q 001903 861 YRRPTIIIASRITGEEEIP---VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (998)
Q Consensus 861 ~~~PtILl~~~v~GeEEIp---~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~~~~~~l~~~~Gk~V~l~~ss~~v 937 (998)
.++|+||+++..+=-+-+. .+|.|++|..-= ..||.||=||.+++|.+..-.+. +..+ ..|..|-|....+.|
T Consensus 394 ~~~~~ILVA~dLtPSd~a~Ld~~~V~Givt~~GG-~TSHtAILARslgIPaVvg~~~~-~~~~--~~G~~vilDG~~G~v 469 (473)
T PRK11377 394 FNSPTILLAENIYPSTVLQLDPAVVKGICLSAGS-PLSHSAIIARELGIGWICQQGEK-LYAI--QPEETLTLDVKTQRL 469 (473)
T ss_pred CCCCEEEEECCCCHHHHHhcCHhHeEEEEECCCC-cccHHHHHHHHcCCCEEEcchhh-Hhhc--cCCCEEEEECCCCEE
Confidence 4788999998776555433 489999995532 57999999999999988776443 2222 257777776665444
Q ss_pred E
Q 001903 938 I 938 (998)
Q Consensus 938 ~ 938 (998)
.
T Consensus 470 ~ 470 (473)
T PRK11377 470 N 470 (473)
T ss_pred E
Confidence 3
No 22
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=63.57 E-value=30 Score=42.81 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=66.0
Q ss_pred hHHHhhcchhHH----------HHHHHhhhhHHHHHHhcCCCceEeecceeeeEEEEecchhc----------ccccccC
Q 001903 803 TEELVRAQSEAV----------LSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELIT----------LQNKVYR 862 (998)
Q Consensus 803 ~Ee~IRa~~~f~----------lS~Ll~~L~~~lR~~a~~~~WqvIs~g~a~G~l~~v~~L~~----------vq~~~~~ 862 (998)
-||.||.|..++ -.++..+=||++|..++- ++.|.. -+...+.
T Consensus 265 l~~aIr~G~~Ae~Ave~V~s~~~ar~~~ltD~YLRER~~D-----------------~~dL~~RLL~~L~~~~~~~~~~p 327 (756)
T COG3605 265 LEEAIRKGLTAEAAVEQVQSEFAARFARLTDPYLRERASD-----------------LRDLGQRLLRHLDGAEQGANAWP 327 (756)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhccCHHHHHHHhh-----------------HHHHHHHHHHHhcCcccchhcCC
Confidence 366777776553 245667779999997651 122211 1245789
Q ss_pred CCEEEEEeccCccc--ccC-CCcEEEeCCCCCCcccceeeeeccCceeEEEe
Q 001903 863 RPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC 911 (998)
Q Consensus 863 ~PtILl~~~v~GeE--EIp-~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc 911 (998)
+++||+++..+--| |.| ...+||++-+-- .-||++|-||.+++|-+-.
T Consensus 328 e~aIlVarel~aa~L~e~Pr~rL~GvVl~dGa-anSH~aIvaRAmGIP~V~~ 378 (756)
T COG3605 328 EDAILVARELGAAELLEYPRDRLRGVVLEDGA-ANSHAAIVARAMGIPTVMG 378 (756)
T ss_pred cceEEEecccCHHHHhhCchhhheeeeeecCc-ccchHHHHHHhcCCceecc
Confidence 99999999887665 667 589999997754 6799999999999998865
No 23
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=59.71 E-value=7.6 Score=49.00 Aligned_cols=113 Identities=20% Similarity=0.208 Sum_probs=77.7
Q ss_pred chhhcchhHHHhhcchhHHHHHHHhhhhHHHHHHhcCCCceEeecceeeeEEEEecchhcccccccCCCEEEEEeccCcc
Q 001903 796 KYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGE 875 (998)
Q Consensus 796 ~~~v~~F~Ee~IRa~~~f~lS~Ll~~L~~~lR~~a~~~~WqvIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~Ge 875 (998)
+|+++- .+.++|+.+.-..+.+-...++ ...=..++. +|||.++|.+..+....+. ...+..+||+.. .+--
T Consensus 305 Ew~id~-~~~ilq~rP~t~~~~~~~~~~~---~~~~~~g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~-~t~p 376 (740)
T COG0574 305 EWAIDG-KLYILQARPETVLSLLHPVEDR---GRALLKGIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTP-MTDP 376 (740)
T ss_pred hhhhcC-ceEEEEecCccccccccccccc---ccceeeeee-ccCCceeEEEEEEecHHHh--cccccCceEEee-cCCH
Confidence 345555 6778899888777777777777 111122333 9999999998888777766 333455666555 4555
Q ss_pred cccCC--CcEEEeCCCCCCcccceeeeeccCceeEEEeechHHH
Q 001903 876 EEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNIL 917 (998)
Q Consensus 876 EEIp~--gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~~~~ 917 (998)
+.+|. ...||+|-..- ..||-||+||.++.|-+..-.....
T Consensus 377 d~~~~m~~a~~Ivt~~Gg-~tshaaivaRe~g~Pavvg~~~~~~ 419 (740)
T COG0574 377 DWVPLMKVAGAIVTDRGG-MTSHAAIVARELGIPAVVGTGSATK 419 (740)
T ss_pred HHhhhhhhccceEEcCCC-ccccchhhhhhcCCCeEEcCchhhh
Confidence 55663 55677775544 7899999999999998876666555
No 24
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=43.48 E-value=20 Score=45.52 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=54.3
Q ss_pred cCCCEEEEEeccCcccccC---CCcEEEeCCCCCCcccceeeeeccCceeEEEeechHHHHHHHhhcCCcEEEEEccCce
Q 001903 861 YRRPTIIIASRITGEEEIP---VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (998)
Q Consensus 861 ~~~PtILl~~~v~GeEEIp---~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~~~~~~l~~~~Gk~V~l~~ss~~v 937 (998)
.+.|+||++...+-.+-.- .++.||+|..-= ..||.||=||+.++|.+..-. ....+ ..|..|.|....+.|
T Consensus 319 ~~~~~Ilva~~l~ps~~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~~--~~G~~vilDg~~G~v 393 (748)
T PRK11061 319 WPERFILVADELTATLLAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPSL--LHQRLLIVDGYRGEL 393 (748)
T ss_pred CCCCEEEEECCCCHHHHHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhhc--cCCCEEEEECCCCEE
Confidence 4678888888776655443 389999995532 579999999999999887664 22222 348888887777666
Q ss_pred EEee
Q 001903 938 IISD 941 (998)
Q Consensus 938 ~~~~ 941 (998)
.+..
T Consensus 394 ~vnP 397 (748)
T PRK11061 394 LVDP 397 (748)
T ss_pred EeCC
Confidence 5543
No 25
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=40.26 E-value=1.7e+02 Score=36.52 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=55.5
Q ss_pred cCCCEEEEEeccCcccccC---CCcEEEeCCCCCCcccceeeeeccCceeEEEeechHHHHHHHhhcCCcEEEEEccCce
Q 001903 861 YRRPTIIIASRITGEEEIP---VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (998)
Q Consensus 861 ~~~PtILl~~~v~GeEEIp---~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~~~~~~l~~~~Gk~V~l~~ss~~v 937 (998)
.++|+||+++-.+=-+-.. ..|.|.+|-.-= ..||.||=||..++|-+......+.. + ..|+.|-+....+.|
T Consensus 153 ~~~~~IlvA~dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~~~~~-v--~~g~~viiDg~~G~v 228 (574)
T COG1080 153 IDEEVILVAEDLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGAATLA-V--KDGDTLILDGINGEV 228 (574)
T ss_pred CCCCeEEEECCCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcHHhhc-c--cCCCEEEEECCCCeE
Confidence 4667888887665555444 378899884322 46999999999999999998887765 1 278877777776666
Q ss_pred EEee
Q 001903 938 IISD 941 (998)
Q Consensus 938 ~~~~ 941 (998)
.+..
T Consensus 229 i~nP 232 (574)
T COG1080 229 IVNP 232 (574)
T ss_pred EECc
Confidence 5543
No 26
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=33.98 E-value=47 Score=36.88 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=22.5
Q ss_pred ChhhHHHHhhhC-CCChhhhhcCCCCc
Q 001903 554 KIDAYWQTLNCH-GLSKQKLASYDRPI 579 (998)
Q Consensus 554 ~~~~yW~~L~~n-Git~ErLasydr~I 579 (998)
|.=++|..+-+. |+|+|++.|++ |.
T Consensus 92 ~hidlwlr~aeAlGvs~eei~s~e-pl 117 (242)
T COG5424 92 NHIDLWLRLAEALGVSREEILSHE-PL 117 (242)
T ss_pred cHHHHHHHHHHHcCCCHHHHhhcC-CC
Confidence 667899999997 99999999999 76
No 27
>PRK03955 hypothetical protein; Reviewed
Probab=31.55 E-value=1.6e+02 Score=30.15 Aligned_cols=96 Identities=15% Similarity=0.214 Sum_probs=62.9
Q ss_pred eEeecceeeeEEEEecc-hhc---cccccc-------C------CCEEEEEeccCcc--------cccCCCc--EEEeCC
Q 001903 836 QVISPVEVCGFITSVNE-LIT---LQNKVY-------R------RPTIIIASRITGE--------EEIPVGV--VAVLTP 888 (998)
Q Consensus 836 qvIs~g~a~G~l~~v~~-L~~---vq~~~~-------~------~PtILl~~~v~Ge--------EEIp~gV--vgVl~~ 888 (998)
..||+|.+.|.+.++++ |.- +.+++. + .-.||+.....|- |=+.-|. .|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 36899999999888864 332 222211 1 3467777777776 2222232 477777
Q ss_pred CCCCcccceeeeeccCceeEEEeechHHHHHHHhhcCCcEEEEEccCceEE
Q 001903 889 DMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLII 939 (998)
Q Consensus 889 ~~pdvLSHlaVRARq~~V~fatc~d~~~~~~l~~~~Gk~V~l~~ss~~v~~ 939 (998)
+.=+.|||=||=| ++|.+..++ .+.| ..|..|++......|.+
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l--~~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKL--KDGDRVVVDGDEGEVEI 128 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceec--CCCCEEEEeCCCCEEEE
Confidence 6655999999999 899999777 3322 28999888766544443
No 28
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=30.59 E-value=1.7e+02 Score=29.02 Aligned_cols=98 Identities=13% Similarity=0.204 Sum_probs=68.7
Q ss_pred eEeecceeeeEEEEecchhcccccccCCCEEEEEeccCcccccCC--CcEEEeCCCCCCcccceeeeeccCceeEEEeec
Q 001903 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (998)
Q Consensus 836 qvIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~GeEEIp~--gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d 913 (998)
|-|..|.+.|+.++-++=.+.- ..+..-.||++..-+ .|-+|. -.-|+||-+.- ..||-||-+++-+||.....+
T Consensus 6 qgIg~gsv~G~~~vA~~~~~~~-~k~~~g~iLv~~std-~d~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~~ 82 (111)
T COG3848 6 QGIGRGSVSGRAVVADSGKEAE-QKFEEGVILVTPSTD-ADFVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGVK 82 (111)
T ss_pred eeecccceeeEEEEccCHhHhh-CCcccCcEEEeccCC-hhhHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEec
Confidence 4566788999998877766643 235566777777654 456774 77899997754 779999999999999999887
Q ss_pred hHHHHHHHhhcCCcEEEEEccCceEEe
Q 001903 914 QNILRNLRLKEGKAVSIRLKSTNLIIS 940 (998)
Q Consensus 914 ~~~~~~l~~~~Gk~V~l~~ss~~v~~~ 940 (998)
...-. =..|..|.+..+- ++.|+
T Consensus 83 ~at~~---i~dG~~vTvD~~r-G~VY~ 105 (111)
T COG3848 83 KATQL---IRDGAIVTVDAQR-GVVYE 105 (111)
T ss_pred chhhh---ccCCCEEEEeccc-ceEEe
Confidence 65432 0267777765542 44444
No 29
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.05 E-value=1.9e+02 Score=32.17 Aligned_cols=87 Identities=18% Similarity=0.383 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHhhcCCCCCCCCch-hhHHHHHHHH---------hhcCCCcc---------hHHHH
Q 001903 466 DRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQ-RIRDEILVIQ---------RNNGCKTG---------MMEEW 526 (998)
Q Consensus 466 ~rlt~~l~~~~~~~p~~R~l~R~~l~tvgRGG~g~~Gq-~IRdeIL~I~---------r~N~~kgg---------~meeW 526 (998)
+||+..+...-.+.|+-..+++.++.=- +.|+.-.|+ ++..-|=.+. ++|=+.|+ ++++|
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 6788877777778889888888887766 666666776 4443332222 22212222 56788
Q ss_pred HhhhcCCCCCChHHHHHHHHHHHHhCCChh
Q 001903 527 HQKLHNNTSPDDIIICEALLNYIRCGFKID 556 (998)
Q Consensus 527 HQKLHnNTtPDDV~ICEAll~fl~s~~~~~ 556 (998)
-++ ...+-.|+.|++|.|.||-.+ |+.
T Consensus 132 ~~~--~~~~e~dlfi~RaVL~yL~l~-n~~ 158 (260)
T PF04190_consen 132 STK--GYPSEADLFIARAVLQYLCLG-NLR 158 (260)
T ss_dssp HHH--TSS--HHHHHHHHHHHHHHTT-BHH
T ss_pred HHh--cCCcchhHHHHHHHHHHHHhc-CHH
Confidence 776 556666999999999999988 643
No 30
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=27.20 E-value=1.2e+03 Score=33.09 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhccccCCCchHHHHHHHHHHhhhh
Q 001903 713 IMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSE 746 (998)
Q Consensus 713 ~l~~~~l~leNl~Ls~~~n~eL~~cl~~W~~~~~ 746 (998)
+-+++.|+|.||-|+-..|....+.++..-++.-
T Consensus 367 LRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavV 400 (2195)
T KOG2122|consen 367 LRRYAGMALTNLTFGDVANKATLCSQRGFMEAVV 400 (2195)
T ss_pred HHHHHHHHhhccccccccchhhhhhhhhHHHHHH
Confidence 5678899999999998888877766666655543
No 31
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=22.90 E-value=1e+03 Score=26.80 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHHHHcCCCccccCCCCCCchh-HHHHHHHHHhhcccCChhHHHHHHHHH--Hhhhc
Q 001903 594 TRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSK-LRECLTFIKAHIHDESINQLMEKLVDS--RIELH 670 (998)
Q Consensus 594 i~df~~Yl~iLK~vHsgaDL~sa~~~~~~g~~~~~~~~~~~l~~~-~~~ll~~vl~~~~~~d~~~~l~~~vea--R~~L~ 670 (998)
--|+.|-..+||+.++|.|-+...+.+ .|.+.++.. +.+++ +..|...+++.+..- .+-|.
T Consensus 96 ~~di~Nik~ilR~~~~g~~~~~i~~~l---------~~~g~~~~~~l~~l~-------~~~~~~e~~~~L~~t~y~~~l~ 159 (343)
T TIGR02923 96 KWDVWNIKTLIRAKYANASAEEVEDLL---------IPAGEFLEKRIKELA-------EAKTIEEIVEALEGTPYYGPLQ 159 (343)
T ss_pred HHhHHHHHHHHHHHHcCCCHHHHHHHh---------ccccccCHHHHHHHH-------cCCCHHHHHHHcCCCccHHHHH
Confidence 458889999999999999887754433 344555442 44433 334433332211100 11111
Q ss_pred ccccCCCCCchhhhhHHHHHHHHHHHHH
Q 001903 671 PVLGTARGRAKDLLFLDISLASAIKTTM 698 (998)
Q Consensus 671 ~~~~~~~~~~rdvl~LDiALe~~~Rt~i 698 (998)
..+ ...+|+..+|.+|+..+-+.+
T Consensus 160 ~~~----~~~~~l~~~E~~Ld~~y~~~l 183 (343)
T TIGR02923 160 EAL----AGNGDLSPIENELDRMYYEKL 183 (343)
T ss_pred HHH----hcCCCHHHHHHHHHHHHHHHH
Confidence 111 124789999999999644433
No 32
>KOG2435 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.78 E-value=3.4e+02 Score=31.00 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=57.2
Q ss_pred eEEEEEEEeeCCceEEEEEecCCCC----eEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeeccc-CCCceeeE
Q 001903 264 HEIVVLSKIISSDYHILVAVNMKGA----AILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIA-TARGSFQM 338 (998)
Q Consensus 264 ~ei~V~v~~~~gk~~V~v~Td~~~~----lVLHWGV~k~~~~EW~~PP~~~~P~gSv~~~~A~ET~f~~~~-~~~~~~q~ 338 (998)
+.|..+|+.+|..|.+.|-|+.--+ =..|--+-.+++.-|. +...||.+.- +..+..|-
T Consensus 202 n~L~LrvRGDGRsy~inihte~~~dq~wndsys~flft~gGp~wq----------------~~KIPfSKff~t~kGriqD 265 (323)
T KOG2435|consen 202 NTLYLRVRGDGRSYMINIHTETDFDQRWNDSYSYFLFTRGGPYWQ----------------EVKIPFSKFFFTNKGRIQD 265 (323)
T ss_pred ceEEEEEecCCceEEEEecCccchhhhcccceeeEEecCCCCcee----------------EEecchhhheeccccceee
Confidence 6688999999999999996654322 2333333343444442 3446777642 33455666
Q ss_pred EEEEccCCceeEEEEEEecCCcccccCCcceEEecC
Q 001903 339 VDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLH 374 (998)
Q Consensus 339 veI~l~~d~~~GI~FVLk~g~~WiKn~G~DF~VpL~ 374 (998)
.+-+++-+..++|-|+|-+. .+++|++.+.
T Consensus 266 rq~e~nl~~vssig~sl~dk------~dGpF~LEID 295 (323)
T KOG2435|consen 266 RQHELNLDKVSSIGFSLADK------VDGPFFLEID 295 (323)
T ss_pred cccccCccceeeEeEEEeec------cCCcceeeEE
Confidence 66677778899999999653 5677766554
No 33
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=20.86 E-value=8e+02 Score=27.99 Aligned_cols=121 Identities=12% Similarity=0.259 Sum_probs=71.7
Q ss_pred HHHHHhhhccceeeeecCCCCCchhhHHHHHHHHHHHHHHHccCCCcHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHhh
Q 001903 436 IMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRN 515 (998)
Q Consensus 436 i~vWlRf~a~rqL~W~~nyN~kPreia~aQ~rlt~~l~~~~~~~p~~R~l~R~~l~tvgRGG~g~~Gq~IRdeIL~I~r~ 515 (998)
|=.||+|.....-.=...-+.+....+-+..+| ..+.++...+|..-.|....|....+=
T Consensus 19 i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~kl-silerAL~~np~~~~L~l~~l~~~~~~------------------- 78 (321)
T PF08424_consen 19 IEAWLELIEFQDELFRLQSSSKAERRALAERKL-SILERALKHNPDSERLLLGYLEEGEKV------------------- 78 (321)
T ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHh-------------------
Confidence 345777765443111111111222333333333 345666666886666666655543222
Q ss_pred cCCCcchHHHHHhhhcCCCCCChHHHHHHHHHHHHhCCChhhHHHHhhhCCCChhhhhcCCCCcccCCCcCcchhhhHHH
Q 001903 516 NGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTR 595 (998)
Q Consensus 516 N~~kgg~meeWHQKLHnNTtPDDV~ICEAll~fl~s~~~~~~yW~~L~~nGit~ErLasydr~I~~eP~~~~~~~~~Li~ 595 (998)
.-..-...+|.+=|.. -|.+..+=.+||+|.-+++ .....+....
T Consensus 79 -~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~--------------------------------~~f~v~~~~~ 123 (321)
T PF08424_consen 79 -WDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNF--------------------------------ASFTVSDVRD 123 (321)
T ss_pred -CCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHh--------------------------------ccCcHHHHHH
Confidence 2222345788888876 4669999999999999973 3344567777
Q ss_pred HHHHHHHHHHhhcCcc
Q 001903 596 DLTMYLKTLKAVHSGA 611 (998)
Q Consensus 596 df~~Yl~iLK~vHsga 611 (998)
-|..-|+.|+..++|.
T Consensus 124 ~y~~~l~~L~~~~~~~ 139 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGR 139 (321)
T ss_pred HHHHHHHHHHHhhccc
Confidence 7778888888887776
No 34
>KOG3021 consensus Predicted kinase [General function prediction only]
Probab=20.76 E-value=79 Score=35.39 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=45.4
Q ss_pred cCchhHHHHHHHHhhhccceeeeecCCCCCchhhHHHHHHHHHHHHHHHccCCCcHHHHHHHHhhcCCCCCCCCchhhH
Q 001903 428 EGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIR 506 (998)
Q Consensus 428 ~g~~g~a~i~vWlRf~a~rqL~W~~nyN~kPreia~aQ~rlt~~l~~~~~~~p~~R~l~R~~l~tvgRGG~g~~Gq~IR 506 (998)
....|-+.|+-.+-|- .+++-|..|...||+.+..+...++..|-=..||||||+ .|.+|-
T Consensus 78 ~p~Ggs~lime~idf~----------------~lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge--~~e~~~ 138 (313)
T KOG3021|consen 78 LPGGGSSLIMEHIDFQ----------------GLRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGE--EGEQIG 138 (313)
T ss_pred cCCCceeeeeehhhcc----------------cchhHHHHHHHHHHHHhhhhHHHHHHHHHhccccccCcc--cccccc
Confidence 3334666666555543 345667889999999998889999988888999999998 566554
Done!