Query 001903
Match_columns 998
No_of_seqs 132 out of 143
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c3v_A Alpha-amylase G-6; carb 93.8 0.12 4.2E-06 48.4 7.1 65 287-373 21-86 (102)
2 2c3v_A Alpha-amylase G-6; carb 92.2 0.29 9.9E-06 45.9 7.0 77 33-123 9-85 (102)
3 2laa_A Beta/alpha-amylase; SBD 92.1 0.34 1.2E-05 45.5 7.3 68 285-374 14-82 (104)
4 3t05_A Pyruvate kinase, PK; te 90.4 0.34 1.1E-05 57.7 6.9 93 837-935 502-596 (606)
5 2ols_A Phosphoenolpyruvate syn 87.4 0.22 7.4E-06 61.0 2.5 99 836-941 364-467 (794)
6 1zym_A Enzyme I; phosphotransf 87.1 1.2 4E-05 47.8 7.6 78 860-941 151-231 (258)
7 2e28_A Pyruvate kinase, PK; al 87.1 0.39 1.3E-05 57.1 4.3 101 836-941 482-583 (587)
8 2laa_A Beta/alpha-amylase; SBD 86.9 1.6 5.6E-05 40.9 7.6 68 43-124 12-81 (104)
9 1h6z_A Pyruvate phosphate diki 83.1 0.73 2.5E-05 57.2 4.3 74 836-913 424-500 (913)
10 2hwg_A Phosphoenolpyruvate-pro 78.3 13 0.00043 44.2 12.3 78 860-941 151-231 (575)
11 1vbg_A Pyruvate,orthophosphate 71.3 0.88 3E-05 56.4 0.2 101 837-941 400-512 (876)
12 1kbl_A PPDK, pyruvate phosphat 70.0 0.89 3.1E-05 56.3 -0.1 102 836-941 395-508 (873)
13 2wqd_A Phosphoenolpyruvate-pro 67.7 7.5 0.00026 46.1 7.0 78 860-941 153-233 (572)
14 2x0s_A Pyruvate phosphate diki 43.6 11 0.00039 46.8 3.2 75 836-914 424-501 (913)
15 1xkm_B Distinctin chain B; por 23.6 24 0.00082 25.0 0.7 13 522-534 12-24 (26)
No 1
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=93.82 E-value=0.12 Score=48.41 Aligned_cols=65 Identities=18% Similarity=0.424 Sum_probs=45.8
Q ss_pred CCeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecccCCCceeeEEEEEccCCceeEEEEEEecC-CcccccC
Q 001903 287 GAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSG-GSWIKNN 365 (998)
Q Consensus 287 ~~lVLHWGV~k~~~~EW~~PP~~~~P~gSv~~~~A~ET~f~~~~~~~~~~q~veI~l~~d~~~GI~FVLk~g-~~WiKn~ 365 (998)
...-|||++. .+.|..+|. .+|.+... .+ +...+|+++.. ..|.||++++ ++|-+|+
T Consensus 21 ~~~ylHy~~~---~g~Wt~vpg---------------v~M~~~~~-~G-w~~~TI~~~~~--~~l~~~F~dG~~~WDNN~ 78 (102)
T 2c3v_A 21 THPHIHYSLN---QGAWTTLPG---------------VPLTKSEX-EG-XVKVTIEAEEG--SQLRAAFNNGSGQWDNNQ 78 (102)
T ss_dssp SSCEEEEEET---TCCBCCTTC---------------EECEECSS-TT-EEEEEECCCTT--CEEEEEEECSSSCEECGG
T ss_pred CcEEEEEeCC---CCCcccCCC---------------cCcccccc-CC-ceEEEEecCCC--ceEEEEEeCCCcccccCC
Confidence 3577999943 378999988 33433211 12 34457777533 5899999997 7999999
Q ss_pred CcceEEec
Q 001903 366 GENFFVGL 373 (998)
Q Consensus 366 G~DF~VpL 373 (998)
|.||.++-
T Consensus 79 g~Ny~~~~ 86 (102)
T 2c3v_A 79 GRDYDFSS 86 (102)
T ss_dssp GTCEEEES
T ss_pred CcceEECC
Confidence 99999964
No 2
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=92.18 E-value=0.29 Score=45.90 Aligned_cols=77 Identities=10% Similarity=0.245 Sum_probs=50.7
Q ss_pred CceEEEEEEEeecCCceEEEeeeeecCCCccccCCCCCCCccccccccccccceEEEEEecCCcceeEEEEEEeccccch
Q 001903 33 GRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRW 112 (998)
Q Consensus 33 G~~~~v~~~~~n~~~~liLHWGv~~~~~~eW~~P~~~Pk~~A~~Tpf~~sG~~~~v~ie~~d~~i~aI~FvLkde~~~~W 112 (998)
|..+.|-.. ......-|||| .+.+.|..+|.-+ |.+.+....++..|+-++-..+||+++|.. +.|
T Consensus 9 g~~vTvyY~--sg~~~~ylHy~---~~~g~Wt~vpgv~--------M~~~~~~Gw~~~TI~~~~~~~l~~~F~dG~-~~W 74 (102)
T 2c3v_A 9 ATDITIYYK--TGWTHPHIHYS---LNQGAWTTLPGVP--------LTKSEXEGXVKVTIEAEEGSQLRAAFNNGS-GQW 74 (102)
T ss_dssp CCSEEEEEE--CCCSSCEEEEE---ETTCCBCCTTCEE--------CEECSSTTEEEEEECCCTTCEEEEEEECSS-SCE
T ss_pred CCEEEEEEc--CCCCcEEEEEe---CCCCCcccCCCcC--------ccccccCCceEEEEecCCCceEEEEEeCCC-ccc
Confidence 444444444 45677889999 3447998877633 222211112233445444589999999987 899
Q ss_pred hcccCCccccc
Q 001903 113 LRLNHGNFRIE 123 (998)
Q Consensus 113 ~k~~g~nf~v~ 123 (998)
-+++|.||.+.
T Consensus 75 DNN~g~Ny~~~ 85 (102)
T 2c3v_A 75 DNNQGRDYDFS 85 (102)
T ss_dssp ECGGGTCEEEE
T ss_pred ccCCCcceEEC
Confidence 99999999985
No 3
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=92.05 E-value=0.34 Score=45.54 Aligned_cols=68 Identities=18% Similarity=0.399 Sum_probs=47.3
Q ss_pred CCCCeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecccCCCceeeEEEEEccCCceeEEEEEEecC-Ccccc
Q 001903 285 MKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSG-GSWIK 363 (998)
Q Consensus 285 ~~~~lVLHWGV~k~~~~EW~~PP~~~~P~gSv~~~~A~ET~f~~~~~~~~~~q~veI~l~~d~~~GI~FVLk~g-~~WiK 363 (998)
--..+-|||+. +.+.|..+|. .+|.+..- .+ +...+|+|+.. ..|.||++++ ++|-+
T Consensus 14 g~~~vylHyg~---~~g~Wt~~~~---------------v~M~~~~~-~g-w~~~TI~l~~g--~~~~~~F~dG~~~WDN 71 (104)
T 2laa_A 14 GFNSPYIHYRP---AGGSWTAAPG---------------VKMQDAEI-SG-YAKITVDIGSA--SQLEAAFNDGNNNWDS 71 (104)
T ss_dssp SSSSCEEEEEE---TTSCCCSSSC---------------EECEEETT-TT-EEEEEEECTTC--SCEEEEEECSSSCEES
T ss_pred CCCcEEEEEcC---CCCCCCcCCc---------------cccccccC-CC-eEEEEEECCCC--CEEEEEEeCCCCcCcC
Confidence 34568999993 3379999887 23332221 12 44467777543 5789999997 69999
Q ss_pred cCCcceEEecC
Q 001903 364 NNGENFFVGLH 374 (998)
Q Consensus 364 n~G~DF~VpL~ 374 (998)
|+|+||.++..
T Consensus 72 n~g~Nyt~~~g 82 (104)
T 2laa_A 72 NNTKNYSFSTG 82 (104)
T ss_dssp TTTSCEEECSE
T ss_pred CCCccEEecCC
Confidence 99999999764
No 4
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=90.43 E-value=0.34 Score=57.74 Aligned_cols=93 Identities=13% Similarity=0.157 Sum_probs=69.2
Q ss_pred EeecceeeeEEEEecchhcccccccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEeech
Q 001903 837 VISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQ 914 (998)
Q Consensus 837 vIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~ 914 (998)
-+++|.+.|.++.+....+.. ..+.++.||++...+-. +++ ..+.|+||-.-- ..||.||-||+.++|-+..-..
T Consensus 502 ~i~~G~v~G~v~vv~~~~da~-~~~~~g~ILVa~~l~Ps-~~~~l~~v~GiVte~Gg-~tSHaAIlAR~lgIPaVvG~~~ 578 (606)
T 3t05_A 502 GIGRGSVVGTTLVAETVKDLE-GKDLSDKVIVTNSIDET-FVPYVEKALGLITEENG-ITSPSAIVGLEKGIPTVVGVEK 578 (606)
T ss_dssp EESSCEEEEEEEECSSGGGGS-SSCCSSEEEEESCCCTT-THHHHTTSSEEEESSCC-SSSHHHHHHHHTTCCEEECCTT
T ss_pred ccccceEEEEEEEECChHHHh-hcCCCCeEEEECCCCHH-HHHHHHhhEEEEecCCC-cccHHHHHHhhCCCCEEEeccc
Confidence 478999999999999877632 34678999999987654 344 589999995543 6799999999999998876654
Q ss_pred HHHHHHHhhcCCcEEEEEccC
Q 001903 915 NILRNLRLKEGKAVSIRLKST 935 (998)
Q Consensus 915 ~~~~~l~~~~Gk~V~l~~ss~ 935 (998)
.. . .-..|+.|.+....+
T Consensus 579 a~-~--~l~~G~~V~vDg~~G 596 (606)
T 3t05_A 579 AV-K--NISNNVLVTIDAAQG 596 (606)
T ss_dssp HH-H--HSCSSCEEEEETTTT
T ss_pred HH-h--hCCCCCEEEEECCCC
Confidence 32 2 123788888876543
No 5
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=87.40 E-value=0.22 Score=61.03 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=55.8
Q ss_pred eEeecceeeeEEEEecchhcccccccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEeec
Q 001903 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (998)
Q Consensus 836 qvIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d 913 (998)
..++||.+.|+|..|....+.. ...++.||++...+= +++| ..+.||||-.-= ..||.||.||..++|-+..-.
T Consensus 364 ~~~~~g~~~G~v~~~~~~~~~~--~~~~g~ILv~~~~~p-~~~~~~~~~~givt~~Gg-~tSHaAivar~~giP~vvg~~ 439 (794)
T 2ols_A 364 RAIGQKVGQGKVRLIKDASEMD--SVEAGDVLVTDMTDP-DWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVGCG 439 (794)
T ss_dssp BC--CCCCCBCBC----------------CEEEESCCCG-GGSHHHHTCSEEEESSCC-TTCHHHHHTTC---CEEECCT
T ss_pred cccCCCcceEEEEEecCHHHHH--hcCCCeEEEECCCCH-HHHHHHhhCcEEEEcCCC-cccHHHHHHhHCCCCEEEcCc
Confidence 3469999999998887766632 346677887766554 6666 589999995432 679999999999999877654
Q ss_pred hHHHHHHHhhcCCcEEE---EEccCceEEee
Q 001903 914 QNILRNLRLKEGKAVSI---RLKSTNLIISD 941 (998)
Q Consensus 914 ~~~~~~l~~~~Gk~V~l---~~ss~~v~~~~ 941 (998)
.. ... -..|+.|.+ ..+.+.|....
T Consensus 440 ~~-~~~--~~~G~~v~v~c~Dg~~G~v~~g~ 467 (794)
T 2ols_A 440 NA-TEL--LKNGQEVTVSCAEGDTGFIYAGL 467 (794)
T ss_dssp TH-HHH--SCSSCCEECCCC--CCCBCEECC
T ss_pred ch-hhc--ccCCCEEEEEecCCCcceEEeCC
Confidence 42 222 236999999 66655555444
No 6
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=87.12 E-value=1.2 Score=47.77 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=53.4
Q ss_pred ccCCCEEEEEeccCcccccC---CCcEEEeCCCCCCcccceeeeeccCceeEEEeechHHHHHHHhhcCCcEEEEEccCc
Q 001903 860 VYRRPTIIIASRITGEEEIP---VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTN 936 (998)
Q Consensus 860 ~~~~PtILl~~~v~GeEEIp---~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~~~~~~l~~~~Gk~V~l~~ss~~ 936 (998)
...+|+||++...+=.+-.- ..+.|+||-.-= ..||.||-||..++|-+..-.. ....+ ..|..|.+....+.
T Consensus 151 ~~~~~~ILVa~~l~Ps~~~~l~~~~~~givt~~Gg-~tSH~AIlAR~lgIPavvg~~~-~~~~~--~~G~~v~vDg~~G~ 226 (258)
T 1zym_A 151 AIQDEVILVAADLTPSETAQLNLKKVLGFITDAGG-RTSHTSIMARSLELPAIVGTGS-VTSQV--KNDDYLILDAVNNQ 226 (258)
T ss_dssp GCCSCEEEECSCCCHHHHHHSCGGGEEEEECSCCC-SSSHHHHHHHHHTCCEECCCSC-HHHHC--CTTCEEEECCSSCC
T ss_pred CCCCCeEEEECCCCHHHHHhhchhhcEEEEEcCCC-cccHHHHHHHHcCCCEEEechh-HHHhC--CCCCEEEEECCCCe
Confidence 45778888887765444322 378899994432 6799999999999997775543 22222 36998888777655
Q ss_pred eEEee
Q 001903 937 LIISD 941 (998)
Q Consensus 937 v~~~~ 941 (998)
|.+..
T Consensus 227 v~~~p 231 (258)
T 1zym_A 227 VYVNP 231 (258)
T ss_dssp EEESC
T ss_pred EEECc
Confidence 65543
No 7
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=87.10 E-value=0.39 Score=57.06 Aligned_cols=101 Identities=10% Similarity=0.068 Sum_probs=72.5
Q ss_pred eEeecceeeeEEEEecchhcccccccCCCEEEEEeccCcccccC-CCcEEEeCCCCCCcccceeeeeccCceeEEEeech
Q 001903 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQ 914 (998)
Q Consensus 836 qvIs~g~a~G~l~~v~~L~~vq~~~~~~PtILl~~~v~GeEEIp-~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~ 914 (998)
..++||.+.|++..+....+.. ..+.+|.||++...+=++-.- ..+.|++|..-= ..||.||-||+.++|-+..-..
T Consensus 482 ~~~~~g~~~G~v~v~~~~~~~~-~~~~~g~ILVa~~l~Ps~~~~l~~~~Givt~~Gg-~tSHaAIlAR~lgIPaVvG~~~ 559 (587)
T 2e28_A 482 QGIGRKSAFGKAVVAKTAEEAR-QKMVDGGILVTVSTDADMMPAIEKAAAIITEEGG-LTSHAAVVGLSLGIPVIVGVEN 559 (587)
T ss_dssp EEESSCEECCBEEECSSHHHHH-HHCCTTCEEEESCCCGGGHHHHTTCSEEEESSCC-TTSHHHHHHHHHTCCEEECCTT
T ss_pred ccccCCeEEeeEEEeCCHHHHh-hcCCCCeEEEECCCCHHHHHHHHhcEEEEEcCCC-CcCHHHHHHHHcCCCEEEeccc
Confidence 5589999999999998765522 245678999998877554322 699999995432 6799999999999998776543
Q ss_pred HHHHHHHhhcCCcEEEEEccCceEEee
Q 001903 915 NILRNLRLKEGKAVSIRLKSTNLIISD 941 (998)
Q Consensus 915 ~~~~~l~~~~Gk~V~l~~ss~~v~~~~ 941 (998)
. ...+ ..|+.|.+....+.|....
T Consensus 560 ~-~~~l--~~G~~v~vDg~~G~V~~~~ 583 (587)
T 2e28_A 560 A-TTLF--KDGQEITVDGGFGAVYRGH 583 (587)
T ss_dssp H-HHHS--CTTCBEEEETTTTEEEESC
T ss_pred H-HHhC--CCCCEEEEECCCCEEEEcc
Confidence 2 2222 3699998877665555443
No 8
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=86.92 E-value=1.6 Score=40.94 Aligned_cols=68 Identities=15% Similarity=0.314 Sum_probs=48.5
Q ss_pred eecCCceEEEeeeeecCCCccccCCCCCCCccccccccccc-cce-EEEEEecCCcceeEEEEEEeccccchhcccCCcc
Q 001903 43 RNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSG-EIY-LVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNF 120 (998)
Q Consensus 43 ~n~~~~liLHWGv~~~~~~eW~~P~~~Pk~~A~~Tpf~~sG-~~~-~v~ie~~d~~i~aI~FvLkde~~~~W~k~~g~nf 120 (998)
+...++..|||| + +.+.|..+|..+ |.+++ +.. ..+|++.. -..|+|+++|.. +.|-.++|+||
T Consensus 12 ~~g~~~vylHyg--~-~~g~Wt~~~~v~--------M~~~~~~gw~~~TI~l~~--g~~~~~~F~dG~-~~WDNn~g~Ny 77 (104)
T 2laa_A 12 KKGFNSPYIHYR--P-AGGSWTAAPGVK--------MQDAEISGYAKITVDIGS--ASQLEAAFNDGN-NNWDSNNTKNY 77 (104)
T ss_dssp ECSSSSCEEEEE--E-TTSCCCSSSCEE--------CEEETTTTEEEEEEECTT--CSCEEEEEECSS-SCEESTTTSCE
T ss_pred cCCCCcEEEEEc--C-CCCCCCcCCccc--------cccccCCCeEEEEEECCC--CCEEEEEEeCCC-CcCcCCCCccE
Confidence 356788999999 3 337998877543 12222 223 36666653 479999999875 89999999999
Q ss_pred cccC
Q 001903 121 RIEI 124 (998)
Q Consensus 121 ~v~L 124 (998)
.++.
T Consensus 78 t~~~ 81 (104)
T 2laa_A 78 SFST 81 (104)
T ss_dssp EECS
T ss_pred EecC
Confidence 9975
No 9
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=83.08 E-value=0.73 Score=57.23 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=52.4
Q ss_pred eEeecceeeeEEEEecchhcccc-cccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEee
Q 001903 836 QVISPVEVCGFITSVNELITLQN-KVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 912 (998)
Q Consensus 836 qvIs~g~a~G~l~~v~~L~~vq~-~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~ 912 (998)
..+|||.++|+|+. .-.+... ....+|+||++...+ -++++ ..+.||||..-= ..||.||-||.+++|-+..-
T Consensus 424 ~~aspG~a~G~v~~--~~~~a~~~~~~ge~~ILV~~~t~-P~d~~~m~~a~GIvT~~GG-~TSHaAIvAR~lGiPaVvG~ 499 (913)
T 1h6z_A 424 LAASPGAAVGQVVF--DAESAKEWSGRGKKVIMVRLETS-PEDLAGMDAACGILTARGG-MTSHAAVVARGMGKCCVSGC 499 (913)
T ss_dssp EEEESCEEEEEEES--SHHHHHSTTTTSCCEEEEESSCC-GGGCTTTTTSSEEEESSCC-TTCHHHHHHHHTTCCEEECC
T ss_pred eecCCceEEEEEEE--CHHHHHHHHhcCCCEEEEECCCC-HHHHHhHHhceEEEEcCCC-cccHHHHHHHhcCCCEEECC
Confidence 45899999999853 2223221 134678898886655 56666 378899995532 57999999999999977654
Q ss_pred c
Q 001903 913 D 913 (998)
Q Consensus 913 d 913 (998)
.
T Consensus 500 ~ 500 (913)
T 1h6z_A 500 G 500 (913)
T ss_dssp T
T ss_pred c
Confidence 3
No 10
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=78.29 E-value=13 Score=44.23 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=53.7
Q ss_pred ccCCCEEEEEeccCcccccC---CCcEEEeCCCCCCcccceeeeeccCceeEEEeechHHHHHHHhhcCCcEEEEEccCc
Q 001903 860 VYRRPTIIIASRITGEEEIP---VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTN 936 (998)
Q Consensus 860 ~~~~PtILl~~~v~GeEEIp---~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~~~~~~l~~~~Gk~V~l~~ss~~ 936 (998)
...+|+||++...+=.+-.- ..+.||||-.-= ..||.||-||++++|-+..-.. ....+ ..|..|.+....+.
T Consensus 151 ~~~~~~ILVa~~l~Ps~~~~l~~~~~~Givt~~Gg-~tSHaAIvAR~lgIPaVvG~~~-~~~~~--~~G~~v~vDg~~G~ 226 (575)
T 2hwg_A 151 AIQDEVILVAADLTPSETAQLNLKKVLGFITDAGG-RTSHTSIMARSLELPAIVGTGS-VTSQV--KNDDYLILDAVNNQ 226 (575)
T ss_dssp GCCSCEEEEESCCCHHHHHTCCTTTEEEEEESSCC-TTSHHHHHHHHTTCCEEECCSC-HHHHC--CTTCEEEEETTTTE
T ss_pred cCCCCEEEEEcCCCHHHHHHhCccceeEEEEcCCC-cccHHHHHHHHCCCCEEEcchh-HHhhC--CCCCEEEEECCCCE
Confidence 35678898888766544332 268999994432 5799999999999987765443 22222 36999988877666
Q ss_pred eEEee
Q 001903 937 LIISD 941 (998)
Q Consensus 937 v~~~~ 941 (998)
|.+..
T Consensus 227 V~~~p 231 (575)
T 2hwg_A 227 VYVNP 231 (575)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 65554
No 11
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=71.29 E-value=0.88 Score=56.37 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=64.6
Q ss_pred EeecceeeeEEEEecchhcccc-cccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEeec
Q 001903 837 VISPVEVCGFITSVNELITLQN-KVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (998)
Q Consensus 837 vIs~g~a~G~l~~v~~L~~vq~-~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d 913 (998)
.+|||.++|+|+. ...+... ....+|+||++...+ -+++| ..+.||||..-= ..||.||-||++++|-+..-.
T Consensus 400 ~as~G~a~G~vv~--~~~~~~~~~~~g~~~ILV~~~t~-P~~~~~~~~a~GivT~~GG-~tSHaAIvAR~lGiP~VvG~~ 475 (876)
T 1vbg_A 400 PASPGAAVGQVVF--TAEDAEAWHSQGKAAILVRAETS-PEDVGGMHAAVGILTERGG-MTSHAAVVARGWGKCCVSGCS 475 (876)
T ss_dssp EEECSEEEEEEES--SHHHHHHHHHTTCCEEEEESCCC-TTSHHHHHHSSEEEESSCC-TTSHHHHHHHHTTCCEEECCT
T ss_pred ccCCCeEEEEEEE--CHHHHHHHhhccCCEEEEEcCCC-HHHHHhHhhccEEEECCCC-CccHHHHHHhHcCCCEEEcCC
Confidence 4799999999854 2222221 224678888877654 44555 257899994432 579999999999999877544
Q ss_pred hHHHHH--------HH-hhcCCcEEEEEccCceEEee
Q 001903 914 QNILRN--------LR-LKEGKAVSIRLKSTNLIISD 941 (998)
Q Consensus 914 ~~~~~~--------l~-~~~Gk~V~l~~ss~~v~~~~ 941 (998)
.-.++. .. -..|..|.+..+.+.|....
T Consensus 476 ~~~~~~~~~~~~~~~~~l~~G~~vtvDG~~G~V~~g~ 512 (876)
T 1vbg_A 476 GIRVNDAEKLVTIGGHVLREGEWLSLNGSTGEVILGK 512 (876)
T ss_dssp TEEEEGGGTEEEETTEEEETTCEEEEETTTTEEEESC
T ss_pred CceeccccceEEeCCeeecCCCEEEEECCCCEEEECC
Confidence 321110 11 13688888877665555544
No 12
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=69.97 E-value=0.89 Score=56.30 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=64.7
Q ss_pred eEeecceeeeEEEEecchhcccc-cccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEee
Q 001903 836 QVISPVEVCGFITSVNELITLQN-KVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 912 (998)
Q Consensus 836 qvIs~g~a~G~l~~v~~L~~vq~-~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~ 912 (998)
..+|||.++|+|+. ...+... ....+|+||++...+ -+++| ..+.||||..-= ..||.||-||++++|-+..-
T Consensus 395 ~~as~G~a~G~vv~--~~~~a~~~~~~g~~~ILV~~~t~-P~~~~~~~~a~GivT~~GG-~tSHaAIvAR~lGiP~VvG~ 470 (873)
T 1kbl_A 395 LPASPGAAAGKVYF--TADEAKAAHEKGERVILVRLETS-PEDIEGMHAAEGILTVRGG-MTSHAAVVARGMGTCCVSGC 470 (873)
T ss_dssp EEEECSEEEEEEES--SHHHHHHHHHTTCCEEEEESSCC-GGGHHHHHHCSEEEESSCC-TTSHHHHHHHHHTCEEEECC
T ss_pred ccccCceEEEEEEE--cHHHHHHhhccCCCEEEEECCCC-HHHHHHHHhccEEEecCCC-CccHHHHHHhHcCCCEEEcC
Confidence 44799999999854 2222221 224678888877654 45555 257899994432 57999999999999987754
Q ss_pred chHHHH--------HHH-hhcCCcEEEEEccCceEEee
Q 001903 913 DQNILR--------NLR-LKEGKAVSIRLKSTNLIISD 941 (998)
Q Consensus 913 d~~~~~--------~l~-~~~Gk~V~l~~ss~~v~~~~ 941 (998)
..-.++ ... -..|..|.|..+.+.|....
T Consensus 471 ~~~~i~~~~~~~~~~~~~l~~G~~vtvDG~~G~V~~g~ 508 (873)
T 1kbl_A 471 GEIKINEEAKTFELGGHTFAEGDYISLDGSTGKIYKGD 508 (873)
T ss_dssp TTCEEETTTTEEEETTEEEETTCEEEEETTTCEEEESC
T ss_pred CCceecccccEEEeCCeeecCCCEEEEECCCCEEEECC
Confidence 432111 011 13688888876665555443
No 13
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=67.71 E-value=7.5 Score=46.07 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=53.5
Q ss_pred ccCCCEEEEEeccCcccccCC---CcEEEeCCCCCCcccceeeeeccCceeEEEeechHHHHHHHhhcCCcEEEEEccCc
Q 001903 860 VYRRPTIIIASRITGEEEIPV---GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTN 936 (998)
Q Consensus 860 ~~~~PtILl~~~v~GeEEIp~---gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~d~~~~~~l~~~~Gk~V~l~~ss~~ 936 (998)
...+|+||++...+=.+-.-. .+.||||-.-= ..||.||-||++++|-+..-.. ....+ ..|..|.+....+.
T Consensus 153 ~~~~~~ILVa~~l~P~~~~~l~~~~~~Givt~~Gg-~tSHaAIvAR~lgIPaVvg~~~-~~~~~--~~G~~v~vDg~~G~ 228 (572)
T 2wqd_A 153 MIDESVVIVGNDLTPSDTAQLNKEFVQGFATNIGG-RTSASAIMSRSLEIPAIVGTKS-ITQEV--KQGDMIIVDGLNGD 228 (572)
T ss_dssp CCSCCEEEEESCCCHHHHTTCCTTTEEEEEESSCC-TTSHHHHHHHHTTCCEEECCSS-HHHHC--CTTCEEEEETTTTE
T ss_pred cCCCCEEEEEcCCCHHHHHhhChhceeEEEEcCCC-cccHHHHHHHHcCCCEEEechh-HHhhC--CCCCEEEEECCCCE
Confidence 356788888877654443322 58899994432 5799999999999997776543 22222 36999988877666
Q ss_pred eEEee
Q 001903 937 LIISD 941 (998)
Q Consensus 937 v~~~~ 941 (998)
|.+..
T Consensus 229 V~~~p 233 (572)
T 2wqd_A 229 VIVNP 233 (572)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 65554
No 14
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=43.63 E-value=11 Score=46.85 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=50.0
Q ss_pred eEeecceeeeEEEEe-cchhcccccccCCCEEEEEeccCcccccC--CCcEEEeCCCCCCcccceeeeeccCceeEEEee
Q 001903 836 QVISPVEVCGFITSV-NELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 912 (998)
Q Consensus 836 qvIs~g~a~G~l~~v-~~L~~vq~~~~~~PtILl~~~v~GeEEIp--~gVvgVl~~~~pdvLSHlaVRARq~~V~fatc~ 912 (998)
-..|||.++|+|+.. ++.... ....++. +||..-+--+++| --..||||-.-= ..||.||=||.+++|-+..-
T Consensus 424 l~aspG~a~G~v~~~~~~~~~~--~~~~~g~-ILV~~~T~Pd~~p~M~~a~gIvT~~GG-~TSHAAIvAR~LGIPaVVG~ 499 (913)
T 2x0s_A 424 LAASPGAAVGQVVFDAESAKEW--SGRGKKV-IMVRLETSPEDLAGMDAACGILTARGG-MTSHAAVVARGMGKCCVSGC 499 (913)
T ss_dssp EEEESSEEEEEEESSHHHHHHH--TTTTCCE-EEEESSCCTTSHHHHTTSSEEEESSCC-TTCHHHHHHHTTTCCEEECC
T ss_pred cccCCccceeeEEechhHHHHH--hhCCCce-EEEcCCCCHHHHHHHHHHHHHHHHccC-CCChHHHHHHHcCCCeecCc
Confidence 357999999998652 222222 2233444 4555556667777 377899994422 45999999999999987754
Q ss_pred ch
Q 001903 913 DQ 914 (998)
Q Consensus 913 d~ 914 (998)
..
T Consensus 500 ~~ 501 (913)
T 2x0s_A 500 GD 501 (913)
T ss_dssp TT
T ss_pred ch
Confidence 43
No 15
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=23.60 E-value=24 Score=24.98 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=11.5
Q ss_pred hHHHHHhhhcCCC
Q 001903 522 MMEEWHQKLHNNT 534 (998)
Q Consensus 522 ~meeWHQKLHnNT 534 (998)
++||.|.||.||.
T Consensus 12 yleqlhrklknck 24 (26)
T 1xkm_B 12 YLEQLHRKLKNCK 24 (26)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCC
Confidence 6799999999985
Done!