Query 001905
Match_columns 997
No_of_seqs 423 out of 1927
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 12:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1932 TATA binding protein a 100.0 6E-168 1E-172 1465.5 66.7 931 1-989 3-982 (1180)
2 PRK14015 pepN aminopeptidase N 100.0 2.4E-70 5.2E-75 673.7 77.6 545 14-682 14-578 (875)
3 TIGR02414 pepN_proteo aminopep 100.0 4.9E-69 1.1E-73 660.1 74.0 539 15-682 3-566 (863)
4 KOG1046 Puromycin-sensitive am 100.0 9.3E-68 2E-72 656.9 43.8 586 13-720 29-634 (882)
5 TIGR02412 pepN_strep_liv amino 100.0 1.4E-66 3E-71 647.7 53.1 566 17-716 12-596 (831)
6 TIGR02411 leuko_A4_hydro leuko 100.0 3.1E-63 6.8E-68 594.4 43.7 433 17-519 9-453 (601)
7 COG0308 PepN Aminopeptidase N 100.0 3.4E-60 7.3E-65 589.8 51.8 528 22-682 25-572 (859)
8 PF01433 Peptidase_M1: Peptida 100.0 6.8E-55 1.5E-59 505.2 32.3 380 14-442 1-390 (390)
9 KOG1047 Bifunctional leukotrie 100.0 2E-49 4.4E-54 439.3 30.2 440 1-516 1-459 (613)
10 PF13485 Peptidase_MA_2: Pepti 98.8 5.3E-09 1.2E-13 100.8 5.6 102 346-465 26-128 (128)
11 COG3975 Predicted protease wit 98.5 3.2E-06 7E-11 96.3 19.0 226 277-517 182-435 (558)
12 PRK09687 putative lyase; Provi 97.3 0.024 5.2E-07 62.8 21.1 209 657-927 55-269 (280)
13 PRK09687 putative lyase; Provi 97.3 0.0093 2E-07 66.0 17.1 176 663-898 98-277 (280)
14 PRK13800 putative oxidoreducta 95.6 1.7 3.7E-05 56.3 24.8 255 650-982 615-894 (897)
15 KOG1932 TATA binding protein a 95.3 0.017 3.7E-07 71.7 4.7 101 432-538 443-554 (1180)
16 PF13646 HEAT_2: HEAT repeats; 95.1 0.078 1.7E-06 47.3 7.2 71 659-737 3-73 (88)
17 PRK13800 putative oxidoreducta 95.0 0.96 2.1E-05 58.6 19.8 131 759-927 757-888 (897)
18 TIGR02270 conserved hypothetic 93.8 7.6 0.00016 45.4 21.7 243 657-990 56-299 (410)
19 PF10460 Peptidase_M30: Peptid 93.7 0.36 7.9E-06 54.7 10.2 138 346-509 140-285 (366)
20 COG1413 FOG: HEAT repeat [Ener 93.3 6.8 0.00015 44.4 20.0 214 657-928 45-263 (335)
21 PF07607 DUF1570: Protein of u 92.9 0.077 1.7E-06 51.2 2.9 39 347-385 3-43 (128)
22 PF05299 Peptidase_M61: M61 gl 92.5 0.053 1.1E-06 51.8 1.1 43 346-388 5-58 (122)
23 PF04450 BSP: Peptidase of pla 92.4 2.3 4.9E-05 44.8 13.1 172 280-504 25-204 (205)
24 PF01602 Adaptin_N: Adaptin N 92.0 2.9 6.2E-05 50.6 15.7 226 659-927 83-322 (526)
25 PF13646 HEAT_2: HEAT repeats; 90.7 1.7 3.6E-05 38.5 8.9 87 692-814 2-88 (88)
26 KOG0946 ER-Golgi vesicle-tethe 89.5 4.7 0.0001 49.2 13.4 145 644-819 109-269 (970)
27 PF01602 Adaptin_N: Adaptin N 88.3 3.8 8.3E-05 49.5 12.4 237 655-928 113-359 (526)
28 PTZ00429 beta-adaptin; Provisi 87.5 43 0.00093 42.3 20.8 52 666-719 115-168 (746)
29 smart00638 LPD_N Lipoprotein N 87.2 13 0.00029 45.6 16.2 146 759-927 412-565 (574)
30 PF01347 Vitellogenin_N: Lipop 85.8 1.8 3.9E-05 53.7 7.7 130 775-927 480-609 (618)
31 PF11864 DUF3384: Domain of un 78.2 1E+02 0.0022 36.8 18.4 35 778-816 150-184 (464)
32 PF03130 HEAT_PBS: PBS lyase H 77.9 2.7 6E-05 28.8 2.9 26 707-736 1-26 (27)
33 smart00567 EZ_HEAT E-Z type HE 76.7 2.5 5.4E-05 29.5 2.5 27 705-735 1-27 (30)
34 TIGR02270 conserved hypothetic 74.6 1.8E+02 0.0039 34.1 21.1 200 652-924 23-224 (410)
35 PF12315 DUF3633: Protein of u 73.5 29 0.00063 36.3 10.2 41 346-388 94-134 (212)
36 KOG1240 Protein kinase contain 72.0 9.4 0.0002 48.9 7.4 55 919-981 586-640 (1431)
37 PF11940 DUF3458: Domain of un 71.3 2E+02 0.0044 33.2 23.6 43 640-682 70-112 (367)
38 PF02985 HEAT: HEAT repeat; I 65.9 8.3 0.00018 27.2 3.2 25 693-719 4-28 (31)
39 KOG1824 TATA-binding protein-i 65.5 3.6E+02 0.0079 34.6 18.5 243 699-987 340-602 (1233)
40 PF10026 DUF2268: Predicted Zn 63.5 29 0.00062 36.3 8.1 41 345-385 65-109 (195)
41 PF03272 Enhancin: Viral enhan 62.5 1.3E+02 0.0029 38.3 15.0 113 265-385 144-276 (775)
42 KOG1062 Vesicle coat complex A 62.5 1.6E+02 0.0035 36.9 14.8 40 888-928 364-404 (866)
43 PF13513 HEAT_EZ: HEAT-like re 62.5 20 0.00044 28.6 5.4 44 673-718 4-55 (55)
44 KOG0567 HEAT repeat-containing 61.6 13 0.00029 40.1 5.1 53 669-723 200-252 (289)
45 PF10023 DUF2265: Predicted am 60.8 11 0.00023 42.5 4.5 39 344-388 164-202 (337)
46 smart00731 SprT SprT homologue 56.4 18 0.00039 35.9 4.9 65 287-359 5-73 (146)
47 COG4324 Predicted aminopeptida 55.7 13 0.00029 39.7 3.9 36 346-387 198-233 (376)
48 PTZ00429 beta-adaptin; Provisi 55.2 2.3E+02 0.0049 36.1 15.2 219 667-929 308-537 (746)
49 KOG4224 Armadillo repeat prote 53.5 59 0.0013 36.7 8.5 121 689-815 251-428 (550)
50 COG1413 FOG: HEAT repeat [Ener 52.4 1.4E+02 0.003 33.7 12.0 16 887-902 288-303 (335)
51 PRK04860 hypothetical protein; 43.3 55 0.0012 33.1 6.0 68 282-358 6-76 (160)
52 KOG1240 Protein kinase contain 40.3 1.1E+03 0.023 31.7 17.5 286 658-987 425-725 (1431)
53 PF05918 API5: Apoptosis inhib 39.0 4.9E+02 0.011 31.8 13.9 47 678-726 48-94 (556)
54 KOG2171 Karyopherin (importin) 38.6 5.7E+02 0.012 33.5 14.9 66 655-722 347-420 (1075)
55 PF13699 DUF4157: Domain of un 37.7 43 0.00092 29.6 3.7 67 288-357 6-73 (79)
56 PF01863 DUF45: Protein of unk 37.5 65 0.0014 33.6 5.9 66 280-360 109-179 (205)
57 KOG4535 HEAT and armadillo rep 35.9 14 0.00031 42.8 0.6 70 690-771 574-651 (728)
58 KOG2973 Uncharacterized conser 35.3 6.9E+02 0.015 28.1 14.3 137 666-819 13-165 (353)
59 PF06685 DUF1186: Protein of u 33.7 1.4E+02 0.003 32.6 7.5 77 758-846 127-203 (249)
60 PF04826 Arm_2: Armadillo-like 32.0 3.9E+02 0.0085 29.2 10.9 124 658-791 15-163 (254)
61 PF10263 SprT-like: SprT-like 31.7 75 0.0016 31.6 4.9 17 344-360 59-75 (157)
62 KOG0567 HEAT repeat-containing 31.0 1.2E+02 0.0027 33.0 6.5 71 659-735 39-109 (289)
63 PF12719 Cnd3: Nuclear condens 29.8 3.5E+02 0.0077 30.1 10.5 95 887-990 77-188 (298)
64 smart00638 LPD_N Lipoprotein N 28.7 1.2E+03 0.025 28.6 17.1 180 706-928 341-535 (574)
65 PF06114 DUF955: Domain of unk 28.5 60 0.0013 30.0 3.5 18 345-362 42-59 (122)
66 PF01435 Peptidase_M48: Peptid 28.3 79 0.0017 33.2 4.7 20 345-364 89-108 (226)
67 PF09292 Neil1-DNA_bind: Endon 26.8 3.4 7.4E-05 30.3 -3.9 26 752-778 2-27 (39)
68 PRK04351 hypothetical protein; 25.2 78 0.0017 31.6 3.6 25 332-356 46-72 (149)
69 PF01447 Peptidase_M4: Thermol 23.4 3.2E+02 0.007 27.3 7.6 28 275-303 66-93 (150)
70 cd00870 PI3Ka_III Phosphoinosi 21.8 4.3E+02 0.0093 26.9 8.3 84 673-764 63-147 (166)
71 PF12725 DUF3810: Protein of u 21.7 1E+02 0.0023 34.8 4.2 42 347-401 198-239 (318)
72 KOG1060 Vesicle coat complex A 21.6 1E+03 0.023 30.1 12.5 193 705-936 371-569 (968)
73 KOG2259 Uncharacterized conser 21.2 55 0.0012 39.8 1.9 44 690-735 374-419 (823)
74 PRK03001 M48 family peptidase; 21.1 1.6E+02 0.0035 32.6 5.6 15 345-359 124-138 (283)
No 1
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=6.1e-168 Score=1465.52 Aligned_cols=931 Identities=36% Similarity=0.586 Sum_probs=766.8
Q ss_pred CCCCCCCCCCC----CCCCCCCeEEEEEEEEEE-EeccCcEEEEEEEEEEEc--CCcceEEEecCCceeEEEEEcCeeee
Q 001905 1 MAKPRKPKNEE----TKVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE 73 (997)
Q Consensus 1 ~~~~~~~~~~~----p~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~l~I~~V~v~g~~~~ 73 (997)
|++.|++.+.. ...++++..++||+|+|+ ||++++++.|.|||+|.+ ++++.|.|||++|+|.+|.|||.++.
T Consensus 3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~ 82 (1180)
T KOG1932|consen 3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK 82 (1180)
T ss_pred cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence 56666665533 335666677999999998 999999999999999984 68999999999999999999999999
Q ss_pred eeeCCCCcccchhhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCC
Q 001905 74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN 153 (997)
Q Consensus 74 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~ 153 (997)
|.|.++ .+....+..|... ..+...++...-.|... ..+.|+|.|.++++.... +. - ..
T Consensus 83 f~y~d~-~q~~~~~~~~~~~-l~~~s~~~~~~~~y~~l--~~~~g~L~I~ipk~~~~~--~e--------------e-~~ 141 (1180)
T KOG1932|consen 83 FIYNDP-TQNDCTDEIWQRV-LDPASQSHFLAVQYEDL--DEDNGELLIKIPKESKKV--GE--------------E-LK 141 (1180)
T ss_pred eeecch-hhhhhhhhhhhhh-hhhhhhhhhHHHhhhcc--ccCCCeEEEEcCchhhhh--hh--------------h-cc
Confidence 999987 4544333333321 11111112222223222 124689999876543211 11 0 11
Q ss_pred ceEEEEEEEEecCCceeeeeec---------eEeecccc--CCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceee
Q 001905 154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQI--RRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY 222 (997)
Q Consensus 154 ~~~i~i~y~~~~~~~G~~F~~~---------~~~T~~ep--~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~ 222 (997)
...++|+|.+++|..|++|++. +++|.+.+ .+||+||||+|+++++|||+|++++|++++++++|+|.+
T Consensus 142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~ 221 (1180)
T KOG1932|consen 142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE 221 (1180)
T ss_pred ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence 3357899999999999999864 45666544 368999999999999999999999999999999999999
Q ss_pred eeeccCCCCceEEEEeccCCCcceeeEEEEeccceeecCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 001905 223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF 302 (997)
Q Consensus 223 ~~~~~~~~~~kt~~F~~t~p~s~yliafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~ 302 (997)
++.++ |.+++|++|+.+.|++|.+||||||+|+.+.++.+.++++||+|+..+.+++++-.+.++++|||++||..|||
T Consensus 222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF 300 (1180)
T KOG1932|consen 222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF 300 (1180)
T ss_pred eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 99876 88999999999999999999999999999988889999999999999999999999999999999999988999
Q ss_pred CCccEEEECCCCcccccccccchhhcccccccccccchhhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHH
Q 001905 303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (997)
Q Consensus 303 ~k~~~V~vp~~~~~~~~~~gagL~i~~~~lL~~~~~~d~~~~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~ 382 (997)
+.|++||||+.+ ......++|.|+++++||+.++||+.+.+++.+|.+||.||||+++||..|+|.||.+|+|.|+..
T Consensus 301 ~~~k~VFvd~~~--~~i~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~ 378 (1180)
T KOG1932|consen 301 SCYKTVFVDEAA--VEISSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG 378 (1180)
T ss_pred ceeeEEEecCCc--ceeeecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence 999999999643 223455679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcHHHHHHHHHhhhhhhhcc-CCCccCCCCCccccCCCCccccccccchhhhHHHHHHHHHHHh----chHH
Q 001905 383 SFIKKFLGNNEARYRRYKANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF 457 (997)
Q Consensus 383 ~~~~~~~G~~e~r~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~f~~i~Y~Kg~lVL~mLe~~l----G~e~ 457 (997)
+|+++++|+|||||+.++.+++++..|. .++..+.. |.+++. .| -.|+++.+|.+.+++ |.-.
T Consensus 379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s~---k~----~~~~~~~lh~~~r~~~~~s~~~~ 446 (1180)
T KOG1932|consen 379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPSM---KF----KLKGPFHLHISIRHLHTLSGSYG 446 (1180)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcch---hh----cccCcceeeecccceeecChhHH
Confidence 9999999999999999999999998877 34444331 111110 01 245555555555544 2233
Q ss_pred HHHHHHHHHHhhcCCC-CCCCCCHHHHHHHHHHhcCCCcccHHHHHHHhhcCCCccEEEEEEEEeccCcEEEEEEEeecc
Q 001905 458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536 (997)
Q Consensus 458 F~~~L~~yl~~~~~~~-~~~~~st~~F~~~~e~v~~~~~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~ 536 (997)
....+++.+...+.++ .+..++.+.|+++++.++. ..++.||++|+++.|+|.+.+.+.||++++.|++.+.|++.
T Consensus 447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~---~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~ 523 (1180)
T KOG1932|consen 447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASK---MLLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR 523 (1180)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh---hHHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence 3444445554444443 1223444556666665542 12689999999999999999999999999999999999765
Q ss_pred CCCCCCCCccc------CCCCCCCC----CCCCCcceeeEEEEeccCCcccccccccCCCceEEEEeecccchhhhhhcC
Q 001905 537 VKPDSRTPVLS------SNTDSENR----DGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK 606 (997)
Q Consensus 537 ~~~~~~~~~~~------~~~~~~~~----~~~~~~~gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k 606 (997)
....+...+.+ ...+.+.+ .+...|+|||||||||.||+|+|++ +| ++.|+++||||||| +|++|
T Consensus 524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi-~~~~~k~dI~chsK---~R~~k 598 (1180)
T KOG1932|consen 524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QI-DGDFTKLDIQCHSK---SRRQK 598 (1180)
T ss_pred hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Ee-cCcccccceeeccc---ccccC
Confidence 54333222111 01111111 1224599999999999999999986 45 45699999999999 45588
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCceEEEecCCCceeeEecccCchhHHHHHHcccCChHHHHHHHHHHHcCCCC
Q 001905 607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL 686 (997)
Q Consensus 607 ~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wir~Dpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~ 686 (997)
+||.++.+|||+++| +++|| .++|++|||+|||+||||+|+++||+|||++||++||||+||+|||++|++.|++
T Consensus 599 kKk~~l~sgEE~e~d-l~~~d----~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~ 673 (1180)
T KOG1932|consen 599 KKKVPLMSGEEIEMD-LTNMD----EESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST 673 (1180)
T ss_pred CcCCCCCChhhhccc-ccccC----ccCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence 899999999999988 77776 3899999999999999999999999999999999999999999999999999866
Q ss_pred chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 001905 687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH 766 (997)
Q Consensus 687 s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~ 766 (997)
. .++||+|||.|+|||||||++||+|||++++++.+|.|++||+++|+++||+.+++|||||||+|||+|||||+||.
T Consensus 674 ~--s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~ 751 (1180)
T KOG1932|consen 674 A--SRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV 751 (1180)
T ss_pred h--hHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence 4 67999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCcccH-------------HHHHHHHHHH
Q 001905 767 AVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSI-------------LFLSSLLKRI 833 (997)
Q Consensus 767 a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~-------------~~~~~~~~ei 833 (997)
|||.+|+.+|+||++|++||||||||||||+|+|||+||||+||+||++..++..+. .+...++.||
T Consensus 752 a~a~lR~~~g~cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ei 831 (1180)
T KOG1932|consen 752 AFASLRGREGKCPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLIDEI 831 (1180)
T ss_pred HHHHhccccCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987664332 2344599999
Q ss_pred HHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhccccccCChHHHHH
Q 001905 834 DRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALS 913 (997)
Q Consensus 834 ~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~ 913 (997)
+|+|+||+++|||.++|+++||+++.+++ ..|++|.++ ..+..|+..+++.++|++|++++++++.. +|....|.
T Consensus 832 ~r~L~~e~l~pS~k~ii~~~~l~~~~~l~--k~~hl~s~p--~~~~~~a~~~~~vd~r~~a~~~~v~~~~~-~~~~~~l~ 906 (1180)
T KOG1932|consen 832 TRLLNMEKLMPSFKHIIKVSALKAIRELQ--KSGHLPSLP--ELLESYAEEGSFVDVRICAEELNVDLGGV-DGSPDDLA 906 (1180)
T ss_pred HHHHHHHhhchhhhceEEeeechhhhhhh--hccccccCc--hhhhccccccchhhhHHHhhhhhhhhccc-CCChHHHH
Confidence 99999999999999999999999999984 589999887 45789999999999999999999999864 45568899
Q ss_pred HHHHHhccCccchhhhHHHHhhhc--cchhccCCCCCCCcCcHHHHHHHHHHhccccccchhhhhhHHHHHHHHhCCC
Q 001905 914 LFIKSVEEEPSLRGQVKLGIHAMR--ICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGSP 989 (997)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~g~~ 989 (997)
++++.++.||.+..|+++...... .+.+.+|++| .++++++++++|.+++....+|+.+||.+.|+|.+|+|+.
T Consensus 907 ~~leil~~~~dp~~R~~i~~ml~~~~np~~~~~~~s--~~~~~~~~~~~~~~~~~~k~~D~~~r~~v~d~~~~L~~~~ 982 (1180)
T KOG1932|consen 907 YILEILENDPDPVIRHKILDMLSQSNNPVTKGGTES--DLLKEALVERLWKLKNLSKEPDICSRSSVLDVYIALFGLG 982 (1180)
T ss_pred HHhhhcccCcchHHHHHHHHHhhccCCceeeccccC--ccccHHHHHhhhhhhccCCCCCeEeEeehhhhhhheeecC
Confidence 999999988777666654443333 3334445655 9999999999999999999999999999999999999864
No 2
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=2.4e-70 Score=673.73 Aligned_cols=545 Identities=16% Similarity=0.207 Sum_probs=408.6
Q ss_pred CCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc--CCcceEEEecCCceeEEEEEcCeee---eeeeCCCCcccchhhh
Q 001905 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPT---EFEYYPHNHQNVENEK 88 (997)
Q Consensus 14 ~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~l~I~~V~v~g~~~---~f~~~~~~~~~~~~~~ 88 (997)
....+|.+.||+|+|++|+++..++|.++|+..+ .+++.|.||+++|+|.+|.+||+++ .|.+.+.
T Consensus 14 y~~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~~~~~~~~~~~~~--------- 84 (875)
T PRK14015 14 YRPPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQPLAPSAYELDEE--------- 84 (875)
T ss_pred cCCCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCEEcCccceEEcCC---------
Confidence 4567899999999999999999999999999765 4568899999999999999999877 5554321
Q ss_pred hhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCceEEEEEEEEecCCc
Q 001905 89 RWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEV 168 (997)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~i~y~~~~~~~ 168 (997)
.|.|... +. .++++ +.|.+.|..+ .+-.
T Consensus 85 ------------------------------~L~I~~l------~~---~~~l~--I~y~~~P~~n-----------~~l~ 112 (875)
T PRK14015 85 ------------------------------GLTIENL------PD---RFTLE--IETEIDPEAN-----------TALE 112 (875)
T ss_pred ------------------------------EEEEecC------Cc---cEEEE--EEEEEecCCC-----------CCce
Confidence 3555310 00 01111 2222222211 0112
Q ss_pred eeeeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeC-Ce-EEEEcCceeeeeeccCCCCceEEEEeccCCCcce
Q 001905 169 GIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQ-NL-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAK 246 (997)
Q Consensus 169 G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~-~~-~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s~y 246 (997)
|+++...+++|||||.+||+||||+|+|+.|+||+++|++|+ .| +++|||.++++.. ..+++++++|+.++|||+|
T Consensus 113 Gly~s~~~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~--~~~g~~~~~w~~~~PmpsY 190 (875)
T PRK14015 113 GLYRSGGMFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGE--LPDGRHWATWEDPFPKPSY 190 (875)
T ss_pred eeEEECCEEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCcccccee--ccCCeEEEEEEeCCCcccc
Confidence 444444468999999999999999999999999999999999 48 6899999987642 3567899999999999999
Q ss_pred eeEEEEeccceeecC----C--CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCcccccc
Q 001905 247 WITLAVAPFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSST 320 (997)
Q Consensus 247 liafaVG~F~~~~~~----~--~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~ 320 (997)
+++|+||+|+++++. . +.++++|+.|+..+.+.++++.++++|+|||++||.||||++|++|++|+...++|++
T Consensus 191 L~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN 270 (875)
T PRK14015 191 LFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMEN 270 (875)
T ss_pred eEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCccccc
Confidence 999999999998753 1 2578999999999999999999999999999999999999999999999654567888
Q ss_pred cccchhhcc-cccccccccc-hhhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHH
Q 001905 321 FGAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYR 397 (997)
Q Consensus 321 ~gagL~i~~-~~lL~~~~~~-d~~~-~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~ 397 (997)
+ ||++|. ..+|.+++.. +..+ ....+|+||+|||||||+|||+||+|+|||||||+|++.+|.....+....++.
T Consensus 271 ~--Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~ 348 (875)
T PRK14015 271 K--GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIE 348 (875)
T ss_pred c--cccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7 678885 4567666532 2222 234689999999999999999999999999999999998888776553322221
Q ss_pred HHHHhhhhhhhccCCCccCCCCCccccCCC---CccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCCCC
Q 001905 398 RYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASP 474 (997)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~---~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~ 474 (997)
....... ..+..++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 349 ~~~~l~~-------~~~~~D~~~~a~pi~p~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~- 420 (875)
T PRK14015 349 DVRVLRA-------AQFAEDAGPMAHPVRPDSYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQA- 420 (875)
T ss_pred HHHHHhh-------hcccccccccCCCCCCcchhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC-
Confidence 1111100 0111111122223321 2345678899999999999999999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHhcCCCcccHHHHHHHhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCCCC
Q 001905 475 VRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSEN 554 (997)
Q Consensus 475 ~~~~st~~F~~~~e~v~~~~~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~ 554 (997)
+++++|++.+++++ |.|+.+|+ +|++++|+|.++|+.+|+..++.++++++|.++..+.
T Consensus 421 ---at~~Df~~ale~as---g~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~~~~-------------- 479 (875)
T PRK14015 421 ---VTCEDFVAAMEDAS---GRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPPTPG-------------- 479 (875)
T ss_pred ---CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCCCCC--------------
Confidence 79999999999887 56899986 9999999999999999987777889999987542211
Q ss_pred CCCCCCcceeeEEEEeccCCcccccccccCCCc-eEEEEeecccchhhhhhcCCCCCCCCCCCCCCCCccccccccccCC
Q 001905 555 RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSME 633 (997)
Q Consensus 555 ~~~~~~~~gp~tiri~e~dGt~~h~~~~~~~~~-~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~ 633 (997)
......|..|++|.+...+|.--- +...++. ...+++.... + . ..-.+ -.+
T Consensus 480 ~~~~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~l~l~~~~-------q---------------~-f~f~~---~~~ 531 (875)
T PRK14015 480 QPEKQPLHIPVAIGLLDPDGKELP--LQLEGEPVERVLELTEAE-------Q---------------T-FTFEN---VAE 531 (875)
T ss_pred CCCCceEEEEEEEEEEcCCCceee--ccccCCccceEEEEcCCe-------e---------------E-EEEcC---CCC
Confidence 012346999999999887775211 0011110 1112221000 0 0 00000 013
Q ss_pred CCceEEEecCCCceeeEecccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001905 634 SPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (997)
Q Consensus 634 ~~~~wir~Dpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (997)
.|+ +.+|++|.-..++..++++..+..|+++|.|..+|.||++.|..
T Consensus 532 ~p~--~s~~r~fsapv~~~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~ 578 (875)
T PRK14015 532 RPV--PSLLRGFSAPVKLEYDYSDEDLLFLMAHDSDPFNRWEAGQRLAT 578 (875)
T ss_pred Cce--EEecCCCCCcEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 344 79999999999999999999999999999999999999999975
No 3
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=4.9e-69 Score=660.13 Aligned_cols=539 Identities=16% Similarity=0.182 Sum_probs=407.5
Q ss_pred CCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEecCCceeEEEEEcCeeee---eeeCCCCcccchhhhhh
Q 001905 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE---FEYYPHNHQNVENEKRW 90 (997)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~---f~~~~~~~~~~~~~~~~ 90 (997)
.+++|.+.||+|+++++++...++|.++|++.+ .+.+.|.||+++|+|.+|.+||+++. |++.+
T Consensus 3 ~~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~~~~~~~~~~~~------------ 70 (863)
T TIGR02414 3 KPPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGKPLAAGDYQLDD------------ 70 (863)
T ss_pred CCCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCEecCcceEEEcC------------
Confidence 357899999999999999999999999999875 34568999999999999999997643 33321
Q ss_pred ccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCceEEEEEEEE----ecC
Q 001905 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWV----EKV 166 (997)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~i~y~~----~~~ 166 (997)
..|.|... | +.+ .++|.|.. +.+
T Consensus 71 ---------------------------~~L~I~~~-~--------~~~-----------------~l~i~~~~~p~~n~~ 97 (863)
T TIGR02414 71 ---------------------------ETLTIASV-P--------ESF-----------------TLEIETEIHPEENTS 97 (863)
T ss_pred ---------------------------CEEEEeeC-C--------ccE-----------------EEEEEEEeecccCCC
Confidence 12555310 0 001 12222222 122
Q ss_pred CceeeeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCC-e-EEEEcCceeeeeeccCCCCceEEEEeccCCCc
Q 001905 167 EVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVS 244 (997)
Q Consensus 167 ~~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~-~-~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s 244 (997)
..|+++.+.+++|||||++||+||||+|+|+.||+|+++|++|++ | +++|||.++++.. .++++++++|+.++|||
T Consensus 98 l~GlY~s~~~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~--~~~g~~~~~f~~t~pmp 175 (863)
T TIGR02414 98 LEGLYKSGGNFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGE--LPDGRHWAEWEDPFPKP 175 (863)
T ss_pred CeEEEEeCCeEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCcccccee--cCCCeEEEEEeCCCCcC
Confidence 346665566789999999999999999999999999999999996 6 6689999876542 35678899999999999
Q ss_pred ceeeEEEEeccceeecCC------CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCcccc
Q 001905 245 AKWITLAVAPFEVLPDHH------QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSS 318 (997)
Q Consensus 245 ~yliafaVG~F~~~~~~~------~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~ 318 (997)
+|++||+||+|+++++.. +.++++|+.|+..+...++++.++++|+|||++||.||||++|++|+||+...++|
T Consensus 176 tYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaM 255 (863)
T TIGR02414 176 SYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAM 255 (863)
T ss_pred hhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCccc
Confidence 999999999999987532 34689999999999999999999999999999999999999999999996545688
Q ss_pred cccccchhhcc-ccccccccc-chhhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHH
Q 001905 319 STFGAAMGIFS-SQILYDEKV-IDQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEAR 395 (997)
Q Consensus 319 ~~~gagL~i~~-~~lL~~~~~-~d~~~-~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r 395 (997)
+++ ||++|. ..+|.++.. .+..+ ....+|+||+|||||||+|||+||+++|||||||+|++.++.....|....+
T Consensus 256 EN~--GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~ 333 (863)
T TIGR02414 256 ENK--GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKR 333 (863)
T ss_pred ccc--ceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHH
Confidence 887 678884 556777654 23222 2346899999999999999999999999999999999988887766543322
Q ss_pred HHHHHHhhhhhhhccCCCccCCCCCccccCCC---CccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCC
Q 001905 396 YRRYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGA 472 (997)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~---~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~ 472 (997)
+......... .+..++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+++++++
T Consensus 334 ~~~~~~lr~~-------~f~~D~~p~~~Pi~~~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~ 406 (863)
T TIGR02414 334 IEDVRLLRAH-------QFPEDAGPMAHPVRPESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQ 406 (863)
T ss_pred HHHHHHHHhh-------hhcccccccCCCCCCcchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCC
Confidence 2211111100 111122222233321 234567889999999999999999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcccHHHHHHHhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCC
Q 001905 473 SPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDS 552 (997)
Q Consensus 473 ~~~~~~st~~F~~~~e~v~~~~~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~ 552 (997)
+ ++++||.+.+++++ |.|+.+|+ +|++++|+|.++|+.+|+.++...+++++|.+...+
T Consensus 407 ~----at~~Df~~ale~as---g~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~~~------------- 465 (863)
T TIGR02414 407 A----VTCEDFVAAMEDAS---GRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPPTP------------- 465 (863)
T ss_pred C----CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCCCC-------------
Confidence 5 79999999999887 56899985 899999999999999998777778899888753211
Q ss_pred CCCCCCCCcceeeEEEEeccCCc-ccccccccCCCc--eEEEEeecccchhhhhhcCCCCCCCCCCCCCCCCcccccccc
Q 001905 553 ENRDGDIGWPGMMSIRVHELDGM-YDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMR 629 (997)
Q Consensus 553 ~~~~~~~~~~gp~tiri~e~dGt-~~h~~~~~~~~~--~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~ 629 (997)
..+....|..|++|.+...+|. .... ..++. ...+++... + .. ..-.+
T Consensus 466 -~~~~~~~~~iPl~i~l~~~~G~~~~~~---~~~~~~~~~~l~l~~~--------------------~--~~-f~f~~-- 516 (863)
T TIGR02414 466 -GQTEKKPLHIPIAVGLLGPNGRKLMLS---LDGERDTTRVLELTEA--------------------E--QT-FVFEG-- 516 (863)
T ss_pred -CCCcCCceEEEEEEEEEeCCCCEeeec---ccCCCCcceEEEEccC--------------------E--EE-EEEcC--
Confidence 0112346999999999988885 2110 11110 111222100 0 00 00000
Q ss_pred ccCCCCceEEEecCCCceeeEecccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001905 630 SSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (997)
Q Consensus 630 ~~~~~~~~wir~Dpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (997)
-.+.|+ +.++++|.-..++..++++..+..|+++|.|..+|.||++.|..
T Consensus 517 -~~~~p~--~sl~r~fsapv~l~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~ 566 (863)
T TIGR02414 517 -IAEKPV--PSLLRGFSAPVNLEYPYSDEDLLLLLAHDSDPFNRWEAGQRLAR 566 (863)
T ss_pred -CCCCCe--eeecCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 012344 89999999999999999999999999999999999999999975
No 4
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-68 Score=656.92 Aligned_cols=586 Identities=18% Similarity=0.243 Sum_probs=426.3
Q ss_pred CCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEecCCceeEEEEEcCeeee-eeeCCCCcccchhhhhh
Q 001905 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE-FEYYPHNHQNVENEKRW 90 (997)
Q Consensus 13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~-f~~~~~~~~~~~~~~~~ 90 (997)
++++..++|.||+|.|.+++....|.|.+.|.+.+ .+++.|.||+.++.|.++.+...... ...... ..
T Consensus 29 ~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~-~~-------- 99 (882)
T KOG1046|consen 29 YRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEV-SV-------- 99 (882)
T ss_pred ccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccc-cc--------
Confidence 46788999999999999999999999999999987 56889999999999999987432111 000000 00
Q ss_pred ccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCc-eEEEEEEEEecCCce
Q 001905 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNV-KLVRIDYWVEKVEVG 169 (997)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~i~i~y~~~~~~~G 169 (997)
........+.+..+.+ +..+. .+ ...+.|.|..+... |+|+..|..+++ |
T Consensus 100 ---------------------~~~~~~~~l~~~~~~~---l~~~~-~y--~L~i~f~g~l~~~~~G~y~s~y~~~~~--~ 150 (882)
T KOG1046|consen 100 ---------------------EEKEQEETLVFPLNET---LLAGS-SY--TLTIEFTGKLNDSSEGFYRSSYTDSEG--S 150 (882)
T ss_pred ---------------------cccccceEEEEEcccc---cccCC-eE--EEEEEEeEeecCCcceeeeecccCCCC--c
Confidence 0000001234432211 11111 12 22356677776654 899999865432 2
Q ss_pred eeeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEeccCCCcceeeE
Q 001905 170 IHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (997)
Q Consensus 170 ~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s~ylia 249 (997)
- .+++.||+||++||+.|||||+|+.||||.|+|.+|++++++|||+.+++.. .++++++.+|+.|+|||+|++|
T Consensus 151 ~---~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl~hp~~~~aLSNm~v~~~~~--~~~~~~~~~F~~Tp~MstYLvA 225 (882)
T KOG1046|consen 151 E---KSIAATQFEPTDARRAFPCFDEPAFKATFTITLVHPKGYTALSNMPVIKEEP--VDDGWKTTTFEKTPKMSTYLVA 225 (882)
T ss_pred e---EEEEEeccCccchhhcCCCCCcccccCceEEEEEecCCceEeecCccccccc--ccCCeeEEEEEecCCCchhhhe
Confidence 1 4678999999999999999999999999999999999999999999987664 3445999999999999999999
Q ss_pred EEEeccceeecCCC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCcccccccccchhh
Q 001905 250 LAVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGI 327 (997)
Q Consensus 250 faVG~F~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagL~i 327 (997)
|+||+|+..+.... .++++|+.|+...+..++++.+.++++||+++||++||++|+|+|+||+.-.++|++| ||++
T Consensus 226 f~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENw--GLvt 303 (882)
T KOG1046|consen 226 FAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENW--GLVT 303 (882)
T ss_pred eeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcC--ccee
Confidence 99999999877654 6899999999999999999999999999999999999999999999998767888888 7999
Q ss_pred c-ccccccccccch--hhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhh
Q 001905 328 F-SSQILYDEKVID--QAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCA 404 (997)
Q Consensus 328 ~-~~~lL~~~~~~d--~~~~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~~~~~~~ 404 (997)
+ +..+|+++.... +......+||||+|||||||+||++||+|+|||||||+|++++.++..++.....-. ...+.
T Consensus 304 yre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~--~~~~~ 381 (882)
T KOG1046|consen 304 YRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQ--FLLEN 381 (882)
T ss_pred eeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHH--HHHHH
Confidence 9 678999986543 333455699999999999999999999999999999999999999988776543111 11111
Q ss_pred hhhhccCCCccCCCCCccccC-----CCCccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCCCCCCCCC
Q 001905 405 VCKADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLS 479 (997)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~~l-----~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~s 479 (997)
++ ..+..++..+.+|+ .+.++...|++++|.||++|||||+..+|++.|++||+.||.+++++| ++
T Consensus 382 l~-----~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~n----a~ 452 (882)
T KOG1046|consen 382 LE-----RVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSN----AK 452 (882)
T ss_pred HH-----HHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCC----CC
Confidence 11 11222222222332 233445689999999999999999999999999999999999999997 57
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCCCCCCCCC
Q 001905 480 TKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDI 559 (997)
Q Consensus 480 t~~F~~~~e~v~~~~~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (997)
++|+.+.++.. .+.|+..||+.|+.|+|+|+++|..+++ .+.++|.++..... ..+...
T Consensus 453 ~~DLw~~l~~~---~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~----~~~l~Q~rf~~~~~--------------~~~~~~ 511 (882)
T KOG1046|consen 453 TEDLWDALEEG---SGLDVSELMDTWTKQMGYPVVTVERNGD----SLTLTQERFLSDPD--------------PSEDNY 511 (882)
T ss_pred chhHHHHHhcc---CCCCHHHHHhhhhcCCCCceEEEEecCC----EEEEehhhhccCCC--------------ccccCc
Confidence 77777766622 2579999999999999999999998764 67777777643211 012245
Q ss_pred CcceeeEEEEeccCCcccccccccCCCceEEEEeecccchhhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEE
Q 001905 560 GWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWI 639 (997)
Q Consensus 560 ~~~gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wi 639 (997)
.|..|+++....... + .++.+..++ .. + . ...+.+||
T Consensus 512 ~w~iPl~~~~~~~~~-~------------~~~~~~~~~-------------~~----------~-~------l~~~~~wi 548 (882)
T KOG1046|consen 512 LWWIPLTYTTSGSGS-V------------PKFWLSSKS-------------TT----------I-K------LPESDQWI 548 (882)
T ss_pred ccceeEEEEcCCCCc-c------------ceeeecCCC-------------cc----------e-e------cCCCCeEE
Confidence 799999986543111 1 001110000 00 0 0 01223899
Q ss_pred EecCCCceeeEecccC-chhHHHHHHcccCC---hHHHHHH---HHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHH
Q 001905 640 RADPEMEYLAEIHFNQ-PVQMWINQLEKDGD---VVAQAQA---IAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAA 712 (997)
Q Consensus 640 r~Dpd~e~l~~v~~~q-p~~m~~~QL~~drd---v~aq~eA---i~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa 712 (997)
.++++..=..+|+++. .+...+.||.. ++ +.-|..= +-+|......+......|...+.++ ..|.+...|+
T Consensus 549 ~~N~~~~g~yRV~Yd~~~w~~l~~~l~~-~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e-~~~~p~~~~~ 626 (882)
T KOG1046|consen 549 KVNLEQTGYYRVNYDDENWALLIEQLKN-HESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNE-TDYVPWSAAI 626 (882)
T ss_pred EEeCCcceEEEEEeCHHHHHHHHHHHhh-cCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcc-cccchHHHHH
Confidence 9999999999999997 46677777755 32 2222211 1223332223333344466777776 4788888887
Q ss_pred HHHHhhcc
Q 001905 713 YALANTAS 720 (997)
Q Consensus 713 ~aL~~~~~ 720 (997)
.+|..+..
T Consensus 627 ~~l~~~~~ 634 (882)
T KOG1046|consen 627 RSLYKLHS 634 (882)
T ss_pred HHHHHHhh
Confidence 77777665
No 5
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.4e-66 Score=647.66 Aligned_cols=566 Identities=15% Similarity=0.165 Sum_probs=389.9
Q ss_pred CCeEEEEEEEEEEEeccCc--EEEEEEEEEEEc-CCcceEEEecCCceeEEEEEcCe-eeeeeeCCCCcccchhhhhhcc
Q 001905 17 SGAVVRHQKLCLSIDMEKH--QIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE-PTEFEYYPHNHQNVENEKRWRS 92 (997)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~--~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~-~~~f~~~~~~~~~~~~~~~~~~ 92 (997)
..+++.||+|.|+++.+.. ++.|.++|++.+ .+++.|.||+.+++|++|++||. ++.+.+.+. .+..
T Consensus 12 ~~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~~~~~~~~~~~---~i~l------ 82 (831)
T TIGR02412 12 SLITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGILDVAPVYDGS---RIPL------ 82 (831)
T ss_pred HhccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCcccCccccCCC---EEEc------
Confidence 4678999999999986655 458888888876 45789999999999999999996 433332211 0000
Q ss_pred ccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCceEEEEEEEEecCCceeee
Q 001905 93 MVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHF 172 (997)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~i~y~~~~~~~G~~F 172 (997)
+ .+..+ ..+|.|.+. ..|++. ..|+++ +. .|.+|
T Consensus 83 ----~-------------~l~~g-~~~l~i~~~------------------~~~~~~---~~Gl~~---~~-~~~~g--- 116 (831)
T TIGR02412 83 ----P-------------GLLTG-ENTLRVEAT------------------RAYTNT---GEGLHR---FV-DPVDG--- 116 (831)
T ss_pred ----c-------------CCCCC-ceEEEEEEE------------------EEecCC---CceEEE---EE-eCCCC---
Confidence 0 01111 123333211 112221 124444 22 24455
Q ss_pred eeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEeccCCCcceeeEEEE
Q 001905 173 DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAV 252 (997)
Q Consensus 173 ~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliafaV 252 (997)
..+++|||||.+||+||||||+|+.||+|+++|++|++|+|+|||++.+.. ..+++++++|+.++|||+|+++|+|
T Consensus 117 -~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~---~~~~~~~~~F~~t~pmstYL~a~~v 192 (831)
T TIGR02412 117 -EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVT---PEPADRRWEFPETPKLSTYLTAVAA 192 (831)
T ss_pred -eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEECCCcccccc---ccCCCeEEEecCCCCcccceEEEEE
Confidence 467899999999999999999999999999999999999999999987553 2456789999999999999999999
Q ss_pred eccceeecCC-CCcEEEEEcCCchhH--HHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCcccccccccchhhcc
Q 001905 253 APFEVLPDHH-QSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFS 329 (997)
Q Consensus 253 G~F~~~~~~~-~~~v~~~~~p~~~~~--~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagL~i~~ 329 (997)
|+|+.++... +.++++||+|+..+. .+++++.++++++|||++||+||||+||++|++|+...++|+++ |++++.
T Consensus 193 G~f~~~~~~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~--Glit~~ 270 (831)
T TIGR02412 193 GPYHSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENA--GCVTFA 270 (831)
T ss_pred eceEEEeecCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCccccc--ceeeec
Confidence 9999987543 567999999987664 56789999999999999999999999999999996545678887 678897
Q ss_pred cccccccccchhh-hhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhhhhhh
Q 001905 330 SQILYDEKVIDQA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKA 408 (997)
Q Consensus 330 ~~lL~~~~~~d~~-~~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~~~~~~~~~~~ 408 (997)
+.+|+.+...+.. .....+|+||+|||||||+||++||+|+|||||||+||+++++++..|.... +........
T Consensus 271 e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~-~~~f~~~~~---- 345 (831)
T TIGR02412 271 ENFLHRAEATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDA-WTTFAAQGK---- 345 (831)
T ss_pred hhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHH----
Confidence 7777765543222 2234589999999999999999999999999999999999999988765432 111110000
Q ss_pred ccCCCccCCCCCccccC----C-CCccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCCCCCCCCCHHHH
Q 001905 409 DDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEF 483 (997)
Q Consensus 409 ~~~~~~~l~~~~~~~~l----~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~F 483 (997)
..++..++.++.+|+ . ..++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++||
T Consensus 346 --~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~n----at~~Dl 419 (831)
T TIGR02412 346 --QWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGN----ATLDDL 419 (831)
T ss_pred --HHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCC----CCHHHH
Confidence 000111111112222 1 12344578999999999999999999999999999999999999996 799999
Q ss_pred HHHHHHhcCCCcccHHHHHHHhhcCCCccEEEEEEEEeccCcEEE-EEEEeeccCCCCCCCCcccCCCCCCCCCCCCCcc
Q 001905 484 RHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVE-LAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWP 562 (997)
Q Consensus 484 ~~~~e~v~~~~~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~ve-l~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (997)
++.+++++ |.++++||++|++++|+|.++|+..++. +.+. +.+.|.. ....|+
T Consensus 420 ~~~l~~~s---g~dl~~~~~~W~~~~G~P~l~v~~~~~~--~~~~~~~~~~~~---------------------~~~~~~ 473 (831)
T TIGR02412 420 IDSLAKAS---GRDLSAWSDAWLETAGVNTLTPEITTDG--GVVSALYPESSG---------------------PPRPHR 473 (831)
T ss_pred HHHHHHHh---CCCHHHHHHHHHcCCCCceEEEEEEECC--CeEEEEEEecCC---------------------CCCCee
Confidence 99999887 5789999999999999999999988764 3333 2222100 012466
Q ss_pred eeeEEEEeccCCcccccccccCCCceEEEEeecccchhhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEEEec
Q 001905 563 GMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRAD 642 (997)
Q Consensus 563 gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wir~D 642 (997)
.|+++. ..++. . + ....+..+.+ .+. +. .... + . ...+..||.++
T Consensus 474 ip~~~~--~~~~~--~-~---~~~~~~~~~~--~~~----~~------~~~~--------~--~-----~~~~~~~v~~N 518 (831)
T TIGR02412 474 IAIGLY--DLDRD--D-L---RRTTLVPLTI--SGE----RT------AVPQ--------L--V-----GKRAPALVLLN 518 (831)
T ss_pred EEEeee--ecCCC--c-c---eeeeEEEEEE--ecC----ce------eehh--------h--c-----CCCCCCEEEEe
Confidence 676652 21111 0 0 0001111222 110 00 0000 0 0 01234899999
Q ss_pred CCCceeeEecccCc-hhHHHHHHcccCChHHHHHHHHHH---HcCCCCch-hHHhHHHhhhccCcchhHHHHHHHHHHH
Q 001905 643 PEMEYLAEIHFNQP-VQMWINQLEKDGDVVAQAQAIAAL---EALPHLSF-NVVNTLNNFLSDSKAFWRVRIEAAYALA 716 (997)
Q Consensus 643 pd~e~l~~v~~~qp-~~m~~~QL~~drdv~aq~eAi~~l---~~~~~~s~-~~~~~L~~~l~d~~~f~~VR~~Aa~aL~ 716 (997)
.+..=.++|+++.. ......+|....+...|..-+.-+ .+-...+. .+...+.+.|.+|. -|-|-.++...|.
T Consensus 519 ~~~~gyyrv~yd~~~~~~l~~~l~~~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~-~~~v~~~~~~~l~ 596 (831)
T TIGR02412 519 DDDLTYAKVRLDPTSFDTVLAALSKLPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSET-DYAVVQQVLSQLL 596 (831)
T ss_pred CCCcEEEEEECCHHHHHHHHHHhhhCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCC-chHHHHHHHHHHH
Confidence 99999999999864 445566776665777776544333 32211222 23344446666664 5555555555555
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=3.1e-63 Score=594.45 Aligned_cols=433 Identities=19% Similarity=0.279 Sum_probs=323.6
Q ss_pred CCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-C-CcceEEEecCCceeEEEEEcCeeeeeeeCCCCcccchhhhhhcccc
Q 001905 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-P-DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMV 94 (997)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~-~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~~ 94 (997)
..++|.||+|+|++|++++.|.|.|+|++.+ . .++.|.||+++|+|++|.++|.++.|+..+. ..
T Consensus 9 ~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~-~~------------ 75 (601)
T TIGR02411 9 KDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGLPADFAIGER-KE------------ 75 (601)
T ss_pred CCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCcccceEeccc-cC------------
Confidence 4699999999999999999999999999986 3 4678999999999999999999888775432 00
Q ss_pred CCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCceEEEEEEEEec-CCceeeee
Q 001905 95 SSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK-VEVGIHFD 173 (997)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~i~y~~~~-~~~G~~F~ 173 (997)
-....|.|.++.+ +..+. .+ .+.+.|+|.+.. .|+ +|+.. ..+|- .
T Consensus 76 --------------------~~g~~L~I~l~~~---l~~g~-~~--~l~I~Y~~~~~~-~gl----~~~~~~~t~g~--~ 122 (601)
T TIGR02411 76 --------------------PLGSPLTISLPIA---TSKNK-EL--VLNISFSTTPKC-TAL----QWLTPEQTSGK--K 122 (601)
T ss_pred --------------------CCCCeEEEEeCCc---cCCCc-eE--EEEEEEeecCCC-cee----EEecccccCCC--C
Confidence 0112578866432 11111 11 223455554432 122 22210 01121 1
Q ss_pred eceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEeccCCCcceeeEEEEe
Q 001905 174 GNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVA 253 (997)
Q Consensus 174 ~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliafaVG 253 (997)
.++++|||||.+||+||||+|+|+.|+||+++|++| ++|++||.++.+. .++..+++|++++|||+|++||+||
T Consensus 123 ~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~----~~~~~~~~F~~t~pmptYLia~avG 196 (601)
T TIGR02411 123 HPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGET----SNDPGKYLFKQKVPIPAYLIALASG 196 (601)
T ss_pred CCEEEECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCccccc----cCCCceEEEEeCCCcchhhheeeec
Confidence 368999999999999999999999999999999999 9999999876543 2345688999999999999999999
Q ss_pred ccceeecCCCCcEEEEEcCCchhHHHHHHH-HHHHHHHHHHHhhCCCCCCCCccEEEECCCC-cccccccccchhhcccc
Q 001905 254 PFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLAPEM-AVSSSTFGAAMGIFSSQ 331 (997)
Q Consensus 254 ~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~-~~~~~~~gagL~i~~~~ 331 (997)
+|+..+. +..+++|+.|+..+.+.+.+. .++++++++|+++| ||||+||++|++|+++ .++|+++ |+++.+..
T Consensus 197 ~~~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~--~ltf~~~~ 271 (601)
T TIGR02411 197 DLASAPI--GPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENP--NLTFATPT 271 (601)
T ss_pred cceeccc--CCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCcccccccccc--cceeeccc
Confidence 9987643 567899999998888888887 89999999998765 9999999999886443 4578887 35544666
Q ss_pred cccccccchhhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH---Hhhhhhhh
Q 001905 332 ILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK---ANCAVCKA 408 (997)
Q Consensus 332 lL~~~~~~d~~~~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~~~---~~~~~~~~ 408 (997)
+|.+.. ....+||||||||||||+||++||+|+|||||||+|++.+++++.+|++.+.+.... .....+..
T Consensus 272 ll~~d~------s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~ 345 (601)
T TIGR02411 272 LIAGDR------SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESVKT 345 (601)
T ss_pred cccCCh------hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHHHh
Confidence 665432 123589999999999999999999999999999999999999999998765443211 11111110
Q ss_pred ccCCCccCCCCCccccCCCCccccccccchhhhHHHHHHHHHHHhc-hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 001905 409 DDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFA 487 (997)
Q Consensus 409 ~~~~~~~l~~~~~~~~l~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG-~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~ 487 (997)
.....++... ..++...++...|+.+.|.||+++|||||+.|| ++.|+++|+.|++++++++ +++++|.+.+
T Consensus 346 -~~~~~~~~~~--~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s----~~t~df~~~l 418 (601)
T TIGR02411 346 -LGEDPEYTKL--VVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKS----LDTYQFKDAL 418 (601)
T ss_pred -hcCCCCCCcc--cccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCC----CCHHHHHHHH
Confidence 0001111110 111222245678999999999999999999999 9999999999999999995 7999999977
Q ss_pred HHhcCC--CcccHHHH-HHHhhcCCCccEEEEEEE
Q 001905 488 NKVGNL--ERPFLKEF-FPRWVGTCGCPVLRMGFS 519 (997)
Q Consensus 488 e~v~~~--~~~dL~~f-~~qWv~~~G~P~l~V~~~ 519 (997)
++.... .+.+++.+ |++|++++|+|.+++.+.
T Consensus 419 ~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 419 YEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 654311 12457766 999999999999876653
No 7
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-60 Score=589.77 Aligned_cols=528 Identities=20% Similarity=0.275 Sum_probs=387.6
Q ss_pred EEEEEEEEEeccCcEEEEEEEEEEEc--C-CcceEEEecCCceeEEEEEcCeeeee--eeCCCCcccchhhhhhccccCC
Q 001905 22 RHQKLCLSIDMEKHQIYGYTELEIAV--P-DIGIVGLHAENLGIESVLVDGEPTEF--EYYPHNHQNVENEKRWRSMVSS 96 (997)
Q Consensus 22 ~hy~l~L~id~~~~~~~G~v~I~i~~--~-~~~~I~L~a~~l~I~~V~v~g~~~~f--~~~~~~~~~~~~~~~~~~~~~~ 96 (997)
.|..|++++++++..|+|.++|++.. . ....|.||+++|+|.+|.+||.+... .+... ...+ ...
T Consensus 25 ~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~~~~~~~~~~-~~~i---------~~~ 94 (859)
T COG0308 25 YDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKALTAWYRLDGD-ALTI---------TVA 94 (859)
T ss_pred cceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccccccccccCc-ccee---------eec
Confidence 44444445555569999999999975 2 23349999999999999999986543 22221 0000 000
Q ss_pred CCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccC--CCceEEEEEEEEecCCceeeeee
Q 001905 97 PSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPK--QNVKLVRIDYWVEKVEVGIHFDG 174 (997)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~--~~~~~i~i~y~~~~~~~G~~F~~ 174 (997)
+. .....+....+.|. +.+.+... .-.|+++.. .+ + .
T Consensus 95 ~~-----------~~~~~~~~~~l~i~--------------------~~~~~~~s~~~~~Gly~~~----~~--~----~ 133 (859)
T COG0308 95 PP-----------IPERSERPFTLAIT--------------------YEFTGPVSNDTLEGLYRSG----YG--G----K 133 (859)
T ss_pred cc-----------cccccCCCccEEEE--------------------EEecccccCccccceeecC----CC--C----C
Confidence 00 00000011122221 22222211 111222211 11 1 3
Q ss_pred ceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEeccCCCcceeeEEEEec
Q 001905 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (997)
Q Consensus 175 ~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliafaVG~ 254 (997)
.+++||||+.+||+||||+|+|+.|+||+++|++++++++||||+++.... ..+++++++|..++|||+|++|+++|+
T Consensus 134 ~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~~~~~--~~~g~~~~~f~~~~~mptYL~al~~G~ 211 (859)
T COG0308 134 PYLITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLIDGGT--LVDGRKIVKFEDTPPMPTYLFALVAGD 211 (859)
T ss_pred eeEEeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCCcccccc--ccCCcEEEEEcCCCCcchHhhheeeec
Confidence 579999999999999999999999999999999999999999999987653 335689999999999999999999999
Q ss_pred cceeecCC-----CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCcccccccccchhhcc
Q 001905 255 FEVLPDHH-----QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFS 329 (997)
Q Consensus 255 F~~~~~~~-----~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagL~i~~ 329 (997)
|+++++.. ..++.+|+.|+....++++++.+.++++|||++||.+||+++ .+|+||+...++|+|+ |++++.
T Consensus 212 ~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~--Gl~tf~ 288 (859)
T COG0308 212 LEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENW--GLVTFR 288 (859)
T ss_pred ceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCcccccc--ceeEEe
Confidence 99988765 577999999999999999999999999999999999999999 9999997667888888 567784
Q ss_pred -cccccccc-cchhhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhhhh
Q 001905 330 -SQILYDEK-VIDQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (997)
Q Consensus 330 -~~lL~~~~-~~d~~~-~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~~~~~~~~~ 406 (997)
..+|.+++ ..+..+ ....+|+||+|||||||+||++||+|+|||||||+|++..+.+.+.|....++..+...
T Consensus 289 ~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~---- 364 (859)
T COG0308 289 EKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTL---- 364 (859)
T ss_pred eeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHH----
Confidence 45777754 444444 23458999999999999999999999999999999999999999988333222222211
Q ss_pred hhccCCCccCCCCCccccC----C-CCccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCCCCCCCCCHH
Q 001905 407 KADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (997)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~l----~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~ 481 (997)
....++..++.+..+|+ + +.++...||.++|.||+.|+|||+..+|++.|+++|+.|+++|.+++ .+++
T Consensus 365 --~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~----~~~~ 438 (859)
T COG0308 365 --RTSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGN----ATTM 438 (859)
T ss_pred --hhhHHHhhccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCC----CCHH
Confidence 11112222333333333 2 35677899999999999999999999999999999999999999996 7999
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCCCCCCCCCCc
Q 001905 482 EFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (997)
Q Consensus 482 ~F~~~~e~v~~~~~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (997)
+|.+..+.++ |+|+.++|++|++++|+|++.|+..++. .+.++|.|+.... ......|
T Consensus 439 Dl~~a~~~~s---g~dl~~~~~~w~~q~G~P~l~v~~~~~~---~~~l~~~q~~~~~----------------~~~~~~~ 496 (859)
T COG0308 439 DLWKALEDAS---GKDLSAFFESWLSQAGYPVLTVSVRYDD---FFKLTQKQFTPPG----------------QEEKRPW 496 (859)
T ss_pred HHHHHHHHHh---CCcHHHHHHHHHhCCCCCceeeeeeccc---cEEEEEEEeccCC----------------CccCcee
Confidence 9999999998 6799999999999999999999998774 5678888876421 0123479
Q ss_pred ceeeEEEEeccCCcccccccccCCCceEEEEeecccchhhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEEEe
Q 001905 562 PGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRA 641 (997)
Q Consensus 562 ~gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wir~ 641 (997)
+.|+.+...+.+|. + ++.+.++.. .+.+. ......++.+
T Consensus 497 ~iPl~~~~~~~~~~--~-~~~~~~~~~-t~~~~-------------------------------------~~~~~~~~~~ 535 (859)
T COG0308 497 PIPLAIKLLDGGGV--K-VLLLTEGEQ-TVTFE-------------------------------------LVGIPPFPSL 535 (859)
T ss_pred eeccEEEecCCCCc--e-eeeeeccce-EEEEe-------------------------------------cccCCcccee
Confidence 99999998877661 1 111111111 11110 0112345677
Q ss_pred cCCCceeeEecccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001905 642 DPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (997)
Q Consensus 642 Dpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (997)
...+.......+..++..|..++++++ +.+|+..+..
T Consensus 536 ~~~~~~~~~~~~~y~~~~l~~~~~~~~----~~~~~~~~~~ 572 (859)
T COG0308 536 KVNDSAPVFYRVDYSDQSLSKLLQHDP----RLEAAQRLAL 572 (859)
T ss_pred eccCCccceEEEecCHHHHHHHHhhhh----hhhHHHHHhh
Confidence 778888889999999999999999988 7777766654
No 8
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=6.8e-55 Score=505.25 Aligned_cols=380 Identities=22% Similarity=0.325 Sum_probs=277.3
Q ss_pred CCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEecCCceeEEEEEcCeeeeeeeCCCCcccchhhhhhcc
Q 001905 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRS 92 (997)
Q Consensus 14 ~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~ 92 (997)
+++..+.|.||+|.|++|+++..|+|.++|++.+ .+++.|.||+++++|.+|.++|.......... . .
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~--~-~-------- 69 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSS--P-F-------- 69 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCE--E-E--------
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCcccccccccc--c-e--------
Confidence 3567899999999999999999999999999987 57899999999999999999987655211100 0 0
Q ss_pred ccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCC-CceEEEEEEEEecCCceee
Q 001905 93 MVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEKVEVGIH 171 (997)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~i~i~y~~~~~~~G~~ 171 (997)
........|.|.++.+ +..+. .+++ .+.|+|.+.. ..|+++..|.......
T Consensus 70 -------------------~~~~~~~~l~I~l~~~---l~~g~-~~~L--~I~y~g~~~~~~~G~~~~~y~~~~~~~--- 121 (390)
T PF01433_consen 70 -------------------EYDDENEKLTITLPKP---LPPGS-NYTL--RIEYSGKISDDSSGLYRSSYTDQTNGN--- 121 (390)
T ss_dssp -------------------EEECCBTEEEEEEEEE---CSTTE-EEEE--EEEEEEECBSSSSEEEEEEEE-GTSSS---
T ss_pred -------------------eeccccceeehhhhhh---cccCc-EEEE--EEEEeecccccccccccceeecccccc---
Confidence 0001112366765432 22211 1233 3567776655 4588888886511111
Q ss_pred eeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEeccCCCcceeeEEE
Q 001905 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLA 251 (997)
Q Consensus 172 F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliafa 251 (997)
..++++|++||.+||+||||+|+|+.||+|+++|++|++++|+|||++.++... ++++++++|..++|||+|++||+
T Consensus 122 -~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~--~~~~~~~~f~~t~p~~~yl~a~~ 198 (390)
T PF01433_consen 122 -TRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESN--DDGWKTTTFETTPPMPTYLFAFA 198 (390)
T ss_dssp -ETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEE--TTTEEEEEEEEEEEEEGGG--EE
T ss_pred -cCCceeecccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccc--cccceeEeeecccccCchhhhhh
Confidence 257899999999999999999999999999999999999999999999987653 36799999999999999999999
Q ss_pred EeccceeecCCC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCcccccccccchhhc-
Q 001905 252 VAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF- 328 (997)
Q Consensus 252 VG~F~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagL~i~- 328 (997)
||+|+.++.... .++++|++|+..+.++++++.+.+++++|+++||.||||+|+++|++|+...++|+++ |++++
T Consensus 199 vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~--g~i~~~ 276 (390)
T PF01433_consen 199 VGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENW--GLITYR 276 (390)
T ss_dssp EESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--T--TEEEEE
T ss_pred cCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeEEEEecccccccccc--cccccc
Confidence 999999876554 4799999999999999999999999999999999999999999999996444566666 56777
Q ss_pred ccccccccccchh--hhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHH-HHHhhhh
Q 001905 329 SSQILYDEKVIDQ--AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR-YKANCAV 405 (997)
Q Consensus 329 ~~~lL~~~~~~d~--~~~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~-~~~~~~~ 405 (997)
+..++++++.... ......+||||+|||||||+||++||+|+||+||||+|++.+++++.+|........ .......
T Consensus 277 ~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (390)
T PF01433_consen 277 ESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRA 356 (390)
T ss_dssp GGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHH
T ss_pred ccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHH
Confidence 5667888765432 233456899999999999999999999999999999999999999999954432111 1111112
Q ss_pred hhhcc-CCCccCCCCCccccC-CCCccccccccchhhhH
Q 001905 406 CKADD-SGATALSSSASCKDL-YGTQCIGIFGKIRSCKS 442 (997)
Q Consensus 406 ~~~~~-~~~~~l~~~~~~~~l-~~~~~~~~f~~i~Y~Kg 442 (997)
+..|. ....++. .++ ...++...|+.+.|.||
T Consensus 357 ~~~d~~~~~~pl~-----~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 357 LREDALPNSHPLS-----SEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHHTSTTCCCSS-----SSSSSESCGGGGSSHHHHHHH
T ss_pred HHHhhcCCCcceE-----eCCCCCCChHHhcCccccCCC
Confidence 22222 1122222 112 23455678999999998
No 9
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=2e-49 Score=439.35 Aligned_cols=440 Identities=19% Similarity=0.268 Sum_probs=324.8
Q ss_pred CCCCCCCCCCCCCC--CCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEecCCceeEEEEEcCeeeeeeeC
Q 001905 1 MAKPRKPKNEETKV--ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYY 77 (997)
Q Consensus 1 ~~~~~~~~~~~p~~--~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~ 77 (997)
||-+| ||.. -...+.+.|+.+.+.+||+.+.++|.+.+++++ .+...|.||.+++.|.+|++||.+.+|...
T Consensus 1 m~~~~-----Dp~s~sn~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~~~~i~ 75 (613)
T KOG1047|consen 1 MAPRR-----DPSSASNYRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEPPFRIG 75 (613)
T ss_pred CCCCC-----CcccccChhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCCCCccC
Confidence 66666 5542 235688999999999999999999999999986 333349999999999999999998877643
Q ss_pred CCCcccchhhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCceEE
Q 001905 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLV 157 (997)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i 157 (997)
.. +. + .+..-.+.+.. + ..+ .++...+
T Consensus 76 ~~--~~------~-----------------------~g~~~~~~l~~--~--~~~------------------a~~~~~l 102 (613)
T KOG1047|consen 76 FR--QP------F-----------------------LGSGQKLVLPA--P--SSK------------------AGERLQL 102 (613)
T ss_pred cc--cC------C-----------------------CCCceEEEecc--c--ccc------------------ccCceEE
Confidence 21 00 0 01111133311 1 110 0112245
Q ss_pred EEEEEEecCCceeee---------eeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccC
Q 001905 158 RIDYWVEKVEVGIHF---------DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKD 228 (997)
Q Consensus 158 ~i~y~~~~~~~G~~F---------~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~~~~ 228 (997)
.|.|.......|+++ +.+|++||||..+||..|||+|.|+.|.||+.+|.+|.++++++++...++. +.
T Consensus 103 ~i~y~Ts~~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~~~~--~~ 180 (613)
T KOG1047|consen 103 LIWYETSPSATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPAGEK--PG 180 (613)
T ss_pred EEEEeccCCcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCcceeeeeccccccC--CC
Confidence 556654444455555 2378999999999999999999999999999999999999999999875543 34
Q ss_pred CCCceEEEEeccCCCcceeeEEEEeccceeecCCCCcEEEEEcCCchhHHHHHHH-HHHHHHHHHHHhhCCCCCCCCccE
Q 001905 229 DPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQ 307 (997)
Q Consensus 229 ~~~~kt~~F~~t~p~s~yliafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~ 307 (997)
..++.+++|++..|+++|++||++|+.+..+. +..-++|+.|...+..+..+. .+.++|+--|+.+| ||+|+.||+
T Consensus 181 ~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eI--gpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDl 257 (613)
T KOG1047|consen 181 SNGRAIFRFKQEVPIPSYLIAIAVGDLESREI--GPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDL 257 (613)
T ss_pred CCCcceEEEEeccCchhhhHHHhhcccccccc--CCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceE
Confidence 55688999999999999999999999876554 455789999999998888887 89999999999999 999999999
Q ss_pred EEECCCC-cccccccccchhhcccccccccccchhhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHH
Q 001905 308 VFLAPEM-AVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIK 386 (997)
Q Consensus 308 V~vp~~~-~~~~~~~gagL~i~~~~lL~~~~~~d~~~~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~ 386 (997)
+++|+.+ .++|++. .|+..+..||-..+. ...+|||||||-||||+||..+|.+.||||||++|++..++.
T Consensus 258 lvlPpSFP~gGMENP--cltF~TpTllaGDrs------l~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g 329 (613)
T KOG1047|consen 258 LVLPPSFPFGGMENP--CLTFVTPTLLAGDRS------LVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVG 329 (613)
T ss_pred EEecCCCCcccccCc--ceeeecchhhcCCcc------hhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhh
Confidence 9999643 2233332 134346666655442 245899999999999999999999999999999999999999
Q ss_pred HHhCCcHHHHHHHHHhhhhhh-hccCCCccCCCCCccccCCCCccccccccchhhhHHHHHHHHHHHhc-hHHHHHHHHH
Q 001905 387 KFLGNNEARYRRYKANCAVCK-ADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQN 464 (997)
Q Consensus 387 ~~~G~~e~r~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG-~e~F~~~L~~ 464 (997)
.++|.....++....+...-. .+.-+. .........++.+.++...|+.+-|.||..+|+.||+.+| ++.|...||.
T Consensus 330 ~~~g~~~~~f~a~~gw~~L~~~~d~~g~-~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~ 408 (613)
T KOG1047|consen 330 RLYGEAYRQFEALIGWRELRPSMDLFGE-TSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYLEQLLGDPTRFDPFLRA 408 (613)
T ss_pred hhcchhHHHHHHhcChhhhhhHHHhcCC-CcccchhhhhccCCChHHhhhcCchhhhhHHHHHHHHHhCChhhHHHHHHH
Confidence 999988765543322222100 011111 0011111223444456678999999999999999999999 5788999999
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHH-hcCCCccc-HHH-HHHHhhcCCCccEEEE
Q 001905 465 IISRAQGASPVRTLSTKEFRHFANK-VGNLERPF-LKE-FFPRWVGTCGCPVLRM 516 (997)
Q Consensus 465 yl~~~~~~~~~~~~st~~F~~~~e~-v~~~~~~d-L~~-f~~qWv~~~G~P~l~V 516 (997)
|+.+++++ ++.+++|..+.-+ ..+...++ ++. -|+.|++++|.|...-
T Consensus 409 Yv~kfa~k----sI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p 459 (613)
T KOG1047|consen 409 YVHKFAFK----SILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKP 459 (613)
T ss_pred HHHHhccc----eecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCC
Confidence 99999998 4899999886644 33211122 233 4999999999997543
No 10
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=98.80 E-value=5.3e-09 Score=100.85 Aligned_cols=102 Identities=20% Similarity=0.328 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhhhhhhccCCCccCCCCCccccC
Q 001905 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDL 425 (997)
Q Consensus 346 ~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 425 (997)
..+++||++|+|++..+........|++||+|+|++...- .+. .... ...+... ...++ .++
T Consensus 26 ~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~~------~~~-~~~~---~~~~~~~--~~~~~------~~l 87 (128)
T PF13485_consen 26 DRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRIE------DEF-DEDL---KQAIESG--SLPPL------EPL 87 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCcc------chh-HHHH---HHHHHcC--CCCCh------HHH
Confidence 4689999999999999988788889999999999983310 010 1110 0111111 11111 111
Q ss_pred CC-CccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHH
Q 001905 426 YG-TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNI 465 (997)
Q Consensus 426 ~~-~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~y 465 (997)
.. ......+....|.+|.+++++|+...|++.|.+.|+.|
T Consensus 88 ~~~~~~~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 88 NSSFDFSWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred hccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 00123344567999999999999999999999999875
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=98.55 E-value=3.2e-06 Score=96.27 Aligned_cols=226 Identities=14% Similarity=0.127 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCcccccccccchhhc-ccccccccccc-hhh-hhh-HHHHHHH
Q 001905 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVI-DQA-IDT-SIKLSFA 352 (997)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagL~i~-~~~lL~~~~~~-d~~-~~~-~~~iaHE 352 (997)
..+.....++++++-=-+.|| +-||.+|.+++--. -..++||.-. |+.+.++.... ++. +.. ..+++||
T Consensus 182 d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s------~q~~GGlEH~~St~l~~~r~~~~~~~ky~~~l~llsHE 254 (558)
T COG3975 182 DKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLS------DQIYGGLEHRRSTALIYDRFGFTDQDKYQDLLGLLSHE 254 (558)
T ss_pred cHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEec------CCCCCCceeccccccccccccccchhHHHHHHHHHHHH
Confidence 344555666666666667787 68999987765321 1233377666 55566665333 222 232 5689999
Q ss_pred HHHhhhcccccCCC-C----------ChhHHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHhhhhhhhccCCCccCCCC
Q 001905 353 LARQWFGVYITPEL-P----------NDEWLLDGLAGFLTDSFIKKFL--GNNEARYRRYKANCAVCKADDSGATALSSS 419 (997)
Q Consensus 353 lAHQWFG~lVt~~~-w----------~d~WLnEGfA~Yl~~~~~~~~~--G~~e~r~~~~~~~~~~~~~~~~~~~~l~~~ 419 (997)
..|-|-+-.|-|.. | .-+|+.|||+.|...++.-..- ..+++.--.-+...++......-..++..+
T Consensus 255 yfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl~~~~~~~gRl~~~laEs 334 (558)
T COG3975 255 YFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTLARYLNTPGRLRQSLAES 334 (558)
T ss_pred HHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCceeccccccc
Confidence 99999998877764 2 4689999999999988754431 112221011112222211100001111111
Q ss_pred Ccccc----CCCCccccccccch--hhhHHHHHHHHHHHh-----chHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHH
Q 001905 420 ASCKD----LYGTQCIGIFGKIR--SCKSVAILQMLEKQM-----GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFAN 488 (997)
Q Consensus 420 ~~~~~----l~~~~~~~~f~~i~--Y~Kg~lVL~mLe~~l-----G~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~e 488 (997)
+.+ .+..+.. .-..+. |.||++|=-+|+-.| |+.++..+++.+...+... ++..+.++++.+++
T Consensus 335 --S~~awik~yr~d~n-s~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~--~~~~t~e~v~av~~ 409 (558)
T COG3975 335 --SFDAWIKYYRPDEN-SPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRA--ERGYTPEDVQAVLE 409 (558)
T ss_pred --ccchhHHhhccccc-ccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcC--ccCCCHHHHHHHHH
Confidence 110 0100000 001122 899999988888887 5678999999988887663 34579999999999
Q ss_pred HhcCCCcccHHHHHHHhhcCCCccEEEEE
Q 001905 489 KVGNLERPFLKEFFPRWVGTCGCPVLRMG 517 (997)
Q Consensus 489 ~v~~~~~~dL~~f~~qWv~~~G~P~l~V~ 517 (997)
.+. |.|+..||++.+++.--|.|.--
T Consensus 410 ~~t---g~dl~~f~~~~i~~~~~~~l~~~ 435 (558)
T COG3975 410 NVT---GLDLATFFDEYIEGTEPPPLNPL 435 (558)
T ss_pred hhc---cccHHHHHHHHhhcCCCCChhhh
Confidence 987 56899999999999988876543
No 12
>PRK09687 putative lyase; Provisional
Probab=97.32 E-value=0.024 Score=62.76 Aligned_cols=209 Identities=17% Similarity=0.059 Sum_probs=136.6
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCCCc---hhHHhHHHhh-hccCcchhHHHHHHHHHHHhhcccccccc--cHHH
Q 001905 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLS---FNVVNTLNNF-LSDSKAFWRVRIEAAYALANTASEETDWA--GLLH 730 (997)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s---~~~~~~L~~~-l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~--g~~~ 730 (997)
.+..+.+|.++.|...|..|+.+|....... ..+...|... +.|+ =+.||..|+.+|+.+......|. .+..
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~--d~~VR~~A~~aLG~~~~~~~~~~~~a~~~ 132 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK--SACVRASAINATGHRCKKNPLYSPKIVEQ 132 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC--CHHHHHHHHHHHhcccccccccchHHHHH
Confidence 4566677888999999999999999874321 2355667666 4443 59999999999999876655441 1223
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHH
Q 001905 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALV 810 (997)
Q Consensus 731 L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li 810 (997)
|..+.. +++ -.|+.+...||+.+++ +++...|+.+|+.+ |..-+...+
T Consensus 133 l~~~~~----D~~--------------~~VR~~a~~aLg~~~~------~~ai~~L~~~L~d~--------~~~VR~~A~ 180 (280)
T PRK09687 133 SQITAF----DKS--------------TNVRFAVAFALSVIND------EAAIPLLINLLKDP--------NGDVRNWAA 180 (280)
T ss_pred HHHHhh----CCC--------------HHHHHHHHHHHhccCC------HHHHHHHHHHhcCC--------CHHHHHHHH
Confidence 332222 221 1488999999987763 57899999999822 335899999
Q ss_pred HHhhccccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCChHHH
Q 001905 811 QSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQV 890 (997)
Q Consensus 811 ~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 890 (997)
.|||.+.... . .++..+...+ ...+..|-.+|+.+|.+++ ..--++.+.+. ...+ .+
T Consensus 181 ~aLg~~~~~~--~----~~~~~L~~~L------~D~~~~VR~~A~~aLg~~~----~~~av~~Li~~----L~~~---~~ 237 (280)
T PRK09687 181 FALNSNKYDN--P----DIREAFVAML------QDKNEEIRIEAIIGLALRK----DKRVLSVLIKE----LKKG---TV 237 (280)
T ss_pred HHHhcCCCCC--H----HHHHHHHHHh------cCCChHHHHHHHHHHHccC----ChhHHHHHHHH----HcCC---ch
Confidence 9999874321 1 3444444444 3447778888888887642 11122333332 2333 28
Q ss_pred HHHHHHHhhccccccCChHHHHHHHHHHhccCccchh
Q 001905 891 RVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRG 927 (997)
Q Consensus 891 r~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 927 (997)
|..|.++|=.++- ..++-.+...+..+|+.+.
T Consensus 238 ~~~a~~ALg~ig~-----~~a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 238 GDLIIEAAGELGD-----KTLLPVLDTLLYKFDDNEI 269 (280)
T ss_pred HHHHHHHHHhcCC-----HhHHHHHHHHHhhCCChhH
Confidence 9999999988753 3677788877776666554
No 13
>PRK09687 putative lyase; Provisional
Probab=97.27 E-value=0.0093 Score=65.97 Aligned_cols=176 Identities=17% Similarity=0.090 Sum_probs=118.4
Q ss_pred HHcccCChHHHHHHHHHHHcCCC----CchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhc
Q 001905 663 QLEKDGDVVAQAQAIAALEALPH----LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 738 (997)
Q Consensus 663 QL~~drdv~aq~eAi~~l~~~~~----~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~ 738 (997)
-+.+|+|..-|..|+.+|..... .+..+...|...+.|+ .++||..|+.+|+++.+++ .+..|+++.+.
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~~~----ai~~L~~~L~d- 170 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK--STNVRFAVAFALSVINDEA----AIPLLINLLKD- 170 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC--CHHHHHHHHHHHhccCCHH----HHHHHHHHhcC-
Confidence 34799999999999999997632 2234566777888886 8899999999999988765 37777766652
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhcccc
Q 001905 739 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (997)
Q Consensus 739 ~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (997)
+ .+.|+.....||+.++ ...+++...|+.+|. |. |...+...+.+||.+..
T Consensus 171 ---~--------------~~~VR~~A~~aLg~~~----~~~~~~~~~L~~~L~--D~------~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 171 ---P--------------NGDVRNWAAFALNSNK----YDNPDIREAFVAMLQ--DK------NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ---C--------------CHHHHHHHHHHHhcCC----CCCHHHHHHHHHHhc--CC------ChHHHHHHHHHHHccCC
Confidence 1 1248999999999883 235578899999993 22 55679999999998643
Q ss_pred CcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCChHHHHHHHHHHh
Q 001905 819 GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRAL 898 (997)
Q Consensus 819 ~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l 898 (997)
..++.-|.++++-+. +.+.+.++|.+++- .--+..+..+...+.+ ..||.+|.++|
T Consensus 222 --------~~av~~Li~~L~~~~--------~~~~a~~ALg~ig~----~~a~p~L~~l~~~~~d----~~v~~~a~~a~ 277 (280)
T PRK09687 222 --------KRVLSVLIKELKKGT--------VGDLIIEAAGELGD----KTLLPVLDTLLYKFDD----NEIITKAIDKL 277 (280)
T ss_pred --------hhHHHHHHHHHcCCc--------hHHHHHHHHHhcCC----HhHHHHHHHHHhhCCC----hhHHHHHHHHH
Confidence 134444444444332 34566677666521 1112223333333332 57899998876
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.62 E-value=1.7 Score=56.30 Aligned_cols=255 Identities=16% Similarity=0.105 Sum_probs=138.8
Q ss_pred EecccCchhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHH
Q 001905 650 EIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLL 729 (997)
Q Consensus 650 ~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~ 729 (997)
-+.+..|.-.++.++..|.|..-|..|+..|.+... ..+...|.+.|.|+ ...||..|+.+|+++...... ..
T Consensus 615 ~~~l~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--~~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~~~~---~~ 687 (897)
T PRK13800 615 VLALDAPSVAELAPYLADPDPGVRRTAVAVLTETTP--PGFGPALVAALGDG--AAAVRRAAAEGLRELVEVLPP---AP 687 (897)
T ss_pred HHhccchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc--hhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccCc---hH
Confidence 334466654455555579999999999999998643 34678899999875 888999999999988532111 24
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHH
Q 001905 730 HLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAAL 809 (997)
Q Consensus 730 ~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~l 809 (997)
.|+++++. .+..|+.+...+|+.++..+ + ..|+..|+ =.|..-+.+.
T Consensus 688 ~L~~~L~~------------------~d~~VR~~A~~aL~~~~~~~---~----~~l~~~L~--------D~d~~VR~~A 734 (897)
T PRK13800 688 ALRDHLGS------------------PDPVVRAAALDVLRALRAGD---A----ALFAAALG--------DPDHRVRIEA 734 (897)
T ss_pred HHHHHhcC------------------CCHHHHHHHHHHHHhhccCC---H----HHHHHHhc--------CCCHHHHHHH
Confidence 55555542 12357777777777765321 1 23445554 1233456666
Q ss_pred HHHhhccccC--------cccHHHHHH--------------HHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcC
Q 001905 810 VQSVGELEFG--------QQSILFLSS--------------LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG 867 (997)
Q Consensus 810 i~al~~~~~~--------~~~~~~~~~--------------~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~ 867 (997)
+.+|+.+.-. .++...-.. .+..+.++++ .-.-.|-.+++.+|.++ |
T Consensus 735 v~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~------D~d~~VR~aA~~aLg~~-----g 803 (897)
T PRK13800 735 VRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG------DPDPLVRAAALAALAEL-----G 803 (897)
T ss_pred HHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc------CCCHHHHHHHHHHHHhc-----C
Confidence 6666653210 011000000 1122222222 22356777777777664 3
Q ss_pred CCC-h-hhhhhhhcccCCCCChHHHHHHHHHHhhccccccCChHHHHHHHHHHhc-cCccchhhhHHHHhhhccchhccC
Q 001905 868 FIS-L-DQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVE-EEPSLRGQVKLGIHAMRICQIKGG 944 (997)
Q Consensus 868 ~~~-~-~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 944 (997)
.-+ . ..+.. ...+ ..+.||.+|.++|-.++. ..++..++..+. .++.+|... ++.+.--.
T Consensus 804 ~~~~~~~~l~~---aL~d--~d~~VR~~Aa~aL~~l~~-----~~a~~~L~~~L~D~~~~VR~~A------~~aL~~~~- 866 (897)
T PRK13800 804 CPPDDVAAATA---ALRA--SAWQVRQGAARALAGAAA-----DVAVPALVEALTDPHLDVRKAA------VLALTRWP- 866 (897)
T ss_pred CcchhHHHHHH---HhcC--CChHHHHHHHHHHHhccc-----cchHHHHHHHhcCCCHHHHHHH------HHHHhccC-
Confidence 222 2 12222 2222 237899999999977542 345666666663 234444321 11111000
Q ss_pred CCCCCCcCcHHHHHHHHHHhccccccchhhhhhHHHHH
Q 001905 945 SDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGIL 982 (997)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~ 982 (997)
..+..+..|...+++ .|..+|..+...+
T Consensus 867 -------~~~~a~~~L~~al~D---~d~~Vr~~A~~aL 894 (897)
T PRK13800 867 -------GDPAARDALTTALTD---SDADVRAYARRAL 894 (897)
T ss_pred -------CCHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 123455566555552 3677777766544
No 15
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=95.29 E-value=0.017 Score=71.71 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=79.4
Q ss_pred cccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHhcC-----------CCcccHHH
Q 001905 432 GIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGN-----------LERPFLKE 500 (997)
Q Consensus 432 ~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~e~v~~-----------~~~~dL~~ 500 (997)
+.|..-.-.|+.++.+|+++++|.+-|.+.+++.+...... ....|....-...+ ..|++++-
T Consensus 443 ~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~------~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~ 516 (1180)
T KOG1932|consen 443 GSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM------LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEM 516 (1180)
T ss_pred hhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh------HHHHHHHHHHhccCCeeEEEEEEEeeccccccH
Confidence 34545556899999999999999999999999999876532 22333332222211 24678999
Q ss_pred HHHHhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCC
Q 001905 501 FFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVK 538 (997)
Q Consensus 501 f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~ 538 (997)
+++||+.++|+..+.|...||++++.++..++|..+..
T Consensus 517 ~i~Q~v~~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g 554 (1180)
T KOG1932|consen 517 GIDQWVRTGGHAPFSVFSDFNRKRNALEHEIKQDYTAG 554 (1180)
T ss_pred HHHHHhhhccccceeeecccchhhhhhhhhccccccCC
Confidence 99999999999999999999999999999999987654
No 16
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.06 E-value=0.078 Score=47.26 Aligned_cols=71 Identities=28% Similarity=0.295 Sum_probs=58.3
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHh
Q 001905 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (997)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~ 737 (997)
..+.+|..|+|...|..|++.|.+.. +..+...|.+.+.|+ .+.||.+|+.+|+++.+++ ..+.|.+++++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~~~----~~~~L~~~l~~ 73 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG--DPEAIPALIELLKDE--DPMVRRAAARALGRIGDPE----AIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT--HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCHHHH----THHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHH----HHHHHHHHHcC
Confidence 35677888999999999999999864 456788999999774 7899999999999997654 47778777664
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.03 E-value=0.96 Score=58.55 Aligned_cols=131 Identities=19% Similarity=0.153 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCcccHHHHHHHHHHHHHHHh
Q 001905 759 FVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQ 838 (997)
Q Consensus 759 ~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~ 838 (997)
.|+.+...+|+.+++... .+...|+.+++- .|...+++++.+|+.+..... +...+...+.
T Consensus 757 ~VR~~aa~aL~~~~~~~~----~~~~~L~~ll~D--------~d~~VR~aA~~aLg~~g~~~~-------~~~~l~~aL~ 817 (897)
T PRK13800 757 EVRIAVAKGLATLGAGGA----PAGDAVRALTGD--------PDPLVRAAALAALAELGCPPD-------DVAAATAALR 817 (897)
T ss_pred HHHHHHHHHHHHhccccc----hhHHHHHHHhcC--------CCHHHHHHHHHHHHhcCCcch-------hHHHHHHHhc
Confidence 577888888888765432 235567777651 237789999999987754211 1222333332
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhccccccCChHHHHHHHHHH
Q 001905 839 FDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKS 918 (997)
Q Consensus 839 ~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~ 918 (997)
=+ .-.|-.+++++|.++. ..-..+.+..++ . +....||.+|.++|-.+ .|...+...+...
T Consensus 818 d~------d~~VR~~Aa~aL~~l~----~~~a~~~L~~~L---~--D~~~~VR~~A~~aL~~~----~~~~~a~~~L~~a 878 (897)
T PRK13800 818 AS------AWQVRQGAARALAGAA----ADVAVPALVEAL---T--DPHLDVRKAAVLALTRW----PGDPAARDALTTA 878 (897)
T ss_pred CC------ChHHHHHHHHHHHhcc----ccchHHHHHHHh---c--CCCHHHHHHHHHHHhcc----CCCHHHHHHHHHH
Confidence 22 2356677888776642 222233333332 2 33478999999999886 2233455555554
Q ss_pred hc-cCccchh
Q 001905 919 VE-EEPSLRG 927 (997)
Q Consensus 919 ~~-~~~~~~~ 927 (997)
++ .|+.+|.
T Consensus 879 l~D~d~~Vr~ 888 (897)
T PRK13800 879 LTDSDADVRA 888 (897)
T ss_pred HhCCCHHHHH
Confidence 44 3566665
No 18
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.84 E-value=7.6 Score=45.42 Aligned_cols=243 Identities=12% Similarity=-0.021 Sum_probs=154.6
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001905 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (997)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (997)
....+..|..|.+......|+.+|..... ..++.+|.+.|.|. ==+||.+||.+|+++..+.. ...|++..+
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~~~~~L~~~L~d~--~~~vr~aaa~ALg~i~~~~a----~~~L~~~L~ 127 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQED--ALDLRSVLAVLQAG--PEGLCAGIQAALGWLGGRQA----EPWLEPLLA 127 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccCC--hHHHHHHHHHhcCC--CHHHHHHHHHHHhcCCchHH----HHHHHHHhc
Confidence 56677888777877777788888886543 23478899999885 45699999999998877653 455666665
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhcc
Q 001905 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (997)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (997)
. .-| +|+.++..+++..+ .+ ....|+.+|+ =.|.+.+++.+.+||.+
T Consensus 128 ~-------~~p-----------~vR~aal~al~~r~-~~------~~~~L~~~L~--------d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 128 A-------SEP-----------PGRAIGLAALGAHR-HD------PGPALEAALT--------HEDALVRAAALRALGEL 174 (410)
T ss_pred C-------CCh-----------HHHHHHHHHHHhhc-cC------hHHHHHHHhc--------CCCHHHHHHHHHHHHhh
Confidence 3 122 47888887777643 21 2346777776 24556789999999987
Q ss_pred ccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCC-hhhhhhhhcccCCCCChHHHHHHHH
Q 001905 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTIWQVRVEAS 895 (997)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~a~ 895 (997)
.... .+..+... ..+.+..|-.+++.++..+ |.-. .+.+ ...|+..|.+...|+++.
T Consensus 175 ~~~~--------a~~~L~~a------l~d~~~~VR~aA~~al~~l-----G~~~A~~~l---~~~~~~~g~~~~~~l~~~ 232 (410)
T TIGR02270 175 PRRL--------SESTLRLY------LRDSDPEVRFAALEAGLLA-----GSRLAWGVC---RRFQVLEGGPHRQRLLVL 232 (410)
T ss_pred cccc--------chHHHHHH------HcCCCHHHHHHHHHHHHHc-----CCHhHHHHH---HHHHhccCccHHHHHHHH
Confidence 5421 11222222 6788899999999988764 3311 1222 223677888887888777
Q ss_pred HHhhccccccCChHHHHHHHHHHhccCccchhhhHHHHhhhccchhccCCCCCCCcCcHHHHHHHHHHhccccccchhhh
Q 001905 896 RALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLR 975 (997)
Q Consensus 896 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 975 (997)
-++. |.+.++.++...+.. +.+|... +..+.. +..+..+..|-..++ |..+|
T Consensus 233 lal~-------~~~~a~~~L~~ll~d-~~vr~~a-----~~AlG~----------lg~p~av~~L~~~l~-----d~~~a 284 (410)
T TIGR02270 233 LAVA-------GGPDAQAWLRELLQA-AATRREA-----LRAVGL----------VGDVEAAPWCLEAMR-----EPPWA 284 (410)
T ss_pred HHhC-------CchhHHHHHHHHhcC-hhhHHHH-----HHHHHH----------cCCcchHHHHHHHhc-----CcHHH
Confidence 6665 334778888877665 3333211 111111 122334444444444 66688
Q ss_pred hhHHHHHHHHhCCCc
Q 001905 976 HHLFGILQILAGSPH 990 (997)
Q Consensus 976 ~~~~~~~~~l~g~~~ 990 (997)
+.+=..+..+.|-..
T Consensus 285 R~A~eA~~~ItG~~l 299 (410)
T TIGR02270 285 RLAGEAFSLITGMDV 299 (410)
T ss_pred HHHHHHHHHhhCCCc
Confidence 888888888888544
No 19
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=93.74 E-value=0.36 Score=54.70 Aligned_cols=138 Identities=19% Similarity=0.217 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhh--hcccccCC--CCChhHHHHHHHHHHHHHHHHHHh-CCc---HHHHHHHHHhhhhhhhccCCCccCC
Q 001905 346 SIKLSFALARQW--FGVYITPE--LPNDEWLLDGLAGFLTDSFIKKFL-GNN---EARYRRYKANCAVCKADDSGATALS 417 (997)
Q Consensus 346 ~~~iaHElAHQW--FG~lVt~~--~w~d~WLnEGfA~Yl~~~~~~~~~-G~~---e~r~~~~~~~~~~~~~~~~~~~~l~ 417 (997)
..+||||+-|+= .-+.|... .-.|+|||||+|.-+++++-.+.. |-| ..|+..|.. ...... .
T Consensus 140 ~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~-------~~~~~~--~ 210 (366)
T PF10460_consen 140 YSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNN-------YTSGNY--N 210 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhh-------ccccCC--C
Confidence 347999999984 32333333 346999999999999998765542 111 123332221 000000 0
Q ss_pred CCCccccCCCCccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHhcCCCccc
Q 001905 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPF 497 (997)
Q Consensus 418 ~~~~~~~l~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~e~v~~~~~~d 497 (997)
+. ...... . .-.-..|..+.+++.-|.+..|.+.+++.|. +.... -+.+-...+.+.++ .+..
T Consensus 211 ~~--l~~w~~--~--g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~----~~~~t-----ds~avl~aa~~~~~--~~~s 273 (366)
T PF10460_consen 211 CS--LTAWSS--F--GDSLASYSSSYSFGAYLYRQYGGDFYKKLLT----NSSST-----DSEAVLDAAIKQAG--PGNS 273 (366)
T ss_pred cc--eeecCC--C--ccccccchhHHHHHHHHHHHcChHHHHHHHh----cCCCC-----cHHHHHHHHHHhhc--CCCC
Confidence 00 000000 0 0012348899999999999889888766554 22111 12223344444443 2457
Q ss_pred HHHHHHHhhcCC
Q 001905 498 LKEFFPRWVGTC 509 (997)
Q Consensus 498 L~~f~~qWv~~~ 509 (997)
+.+++.+|.-..
T Consensus 274 f~~~l~~w~~A~ 285 (366)
T PF10460_consen 274 FGELLRRWGVAL 285 (366)
T ss_pred HHHHHHHHHHHH
Confidence 999999998766
No 20
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.27 E-value=6.8 Score=44.43 Aligned_cols=214 Identities=23% Similarity=0.219 Sum_probs=131.4
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001905 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (997)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (997)
.......| .++|..-+..|...|.... +..++..|.+.+.|..+ +||-.|+.+|++...++. ...|++.+.
T Consensus 45 ~~~~~~~l-~~~~~~vr~~aa~~l~~~~--~~~av~~l~~~l~d~~~--~vr~~a~~aLg~~~~~~a----~~~li~~l~ 115 (335)
T COG1413 45 ADELLKLL-EDEDLLVRLSAAVALGELG--SEEAVPLLRELLSDEDP--RVRDAAADALGELGDPEA----VPPLVELLE 115 (335)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHhhhc--hHHHHHHHHHHhcCCCH--HHHHHHHHHHHccCChhH----HHHHHHHHH
Confidence 44445555 5679999999999999864 44678889999999764 999999999999988764 788888877
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCC----CCCChHHHHHHHHHH
Q 001905 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNG----NPYSDVFWLAALVQS 812 (997)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~----N~ysD~~y~a~li~a 812 (997)
. ++ +++|+.+...||+.+++.+. ..=|+++++-++... ...-+..-+.+.+.+
T Consensus 116 ~---d~--------------~~~vR~~aa~aL~~~~~~~a------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 116 N---DE--------------NEGVRAAAARALGKLGDERA------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred c---CC--------------cHhHHHHHHHHHHhcCchhh------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 4 22 25689999999999997765 333555554322111 000111356777788
Q ss_pred hhccccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCChHHHHH
Q 001905 813 VGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRV 892 (997)
Q Consensus 813 l~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~ 892 (997)
|+...... ....+++.+. -... .|-.++..+|.++. .+...... .+.+ ...+....||.
T Consensus 173 l~~~~~~~----~~~~l~~~l~----~~~~------~vr~~Aa~aL~~~~---~~~~~~~~---~l~~-~~~~~~~~vr~ 231 (335)
T COG1413 173 LGELGDPE----AIPLLIELLE----DEDA------DVRRAAASALGQLG---SENVEAAD---LLVK-ALSDESLEVRK 231 (335)
T ss_pred HHHcCChh----hhHHHHHHHh----CchH------HHHHHHHHHHHHhh---cchhhHHH---HHHH-HhcCCCHHHHH
Confidence 87654421 1222222222 1111 55556666666642 12111211 1112 23355689999
Q ss_pred HHHHHhhccccccCChHHHHHHHHHHhcc-Cccchhh
Q 001905 893 EASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRGQ 928 (997)
Q Consensus 893 ~a~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 928 (997)
+|...|-.++.. .+...++..+.. ++.++..
T Consensus 232 ~~~~~l~~~~~~-----~~~~~l~~~l~~~~~~~~~~ 263 (335)
T COG1413 232 AALLALGEIGDE-----EAVDALAKALEDEDVILALL 263 (335)
T ss_pred HHHHHhcccCcc-----hhHHHHHHHHhccchHHHHH
Confidence 999999986653 445566666554 4555543
No 21
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=92.92 E-value=0.077 Score=51.20 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhcccccCC--CCChhHHHHHHHHHHHHHHH
Q 001905 347 IKLSFALARQWFGVYITPE--LPNDEWLLDGLAGFLTDSFI 385 (997)
Q Consensus 347 ~~iaHElAHQWFG~lVt~~--~w~d~WLnEGfA~Yl~~~~~ 385 (997)
.+++||-+||=.-|.=--. .-.=.|+.||||+|++..-+
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 3689999999865542111 11227999999999986544
No 22
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=92.46 E-value=0.053 Score=51.80 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhhcccccCCC-----------CChhHHHHHHHHHHHHHHHHHH
Q 001905 346 SIKLSFALARQWFGVYITPEL-----------PNDEWLLDGLAGFLTDSFIKKF 388 (997)
Q Consensus 346 ~~~iaHElAHQWFG~lVt~~~-----------w~d~WLnEGfA~Yl~~~~~~~~ 388 (997)
..++|||..|.|-|-.+-|.. -+.+|+-||++.|+..+++.+.
T Consensus 5 l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 5 LGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 347999999999987766653 4468999999999999887654
No 23
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=92.35 E-value=2.3 Score=44.78 Aligned_cols=172 Identities=16% Similarity=0.112 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHhhCCC-CCCCCccEEE--ECCCCccccccccc---chhhccccccccccc-chhhhhhHHHHHHH
Q 001905 280 NTVEFFHNAFSHYETYLDAK-FPFGSYKQVF--LAPEMAVSSSTFGA---AMGIFSSQILYDEKV-IDQAIDTSIKLSFA 352 (997)
Q Consensus 280 ~~~~~~~~~l~~~e~~~g~~-YP~~k~~~V~--vp~~~~~~~~~~ga---gL~i~~~~lL~~~~~-~d~~~~~~~~iaHE 352 (997)
.+...+..+..+..+.|-.+ .|-+..+.|. +. +|.+.....|. .-|.+|.+.+-.... -+...+..-+|.||
T Consensus 25 ~a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~-~~~gVA~t~gd~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE 103 (205)
T PF04450_consen 25 DAEQVLRDASRFVWRLLYQSPADRKPVRSVTLILD-DMDGVAYTSGDDDHKEIHFSARYIAKYPADGDVRDEIIGVLYHE 103 (205)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEE-CCCeeEEEecCCCccEEEEeHHHHhhcccccchHHHHHHHHHHH
Confidence 33445555566666665433 2223344442 33 33222222220 233335444432211 12234456689999
Q ss_pred HHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhhhhhhccCCCccCCCCCccccCCCCcccc
Q 001905 353 LARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIG 432 (997)
Q Consensus 353 lAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 432 (997)
|+|-|=.+--.. .--||.||+|.|+-.. .|-. ++.-. .+... .
T Consensus 104 ~~H~~Q~~~~~~---~P~~liEGIADyVRl~-----aG~~---------------------~~~w~----~p~~~----~ 146 (205)
T PF04450_consen 104 MVHCWQWDGRGT---APGGLIEGIADYVRLK-----AGYA---------------------PPHWK----RPGGG----D 146 (205)
T ss_pred HHHHhhcCCCCC---CChhheecHHHHHHHH-----cCCC---------------------Ccccc----CCCCC----C
Confidence 999775554222 2349999999998321 1110 00000 00000 0
Q ss_pred ccccchhhhHHHHHHHHHH-HhchHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHhcCCCcccHHHHHHH
Q 001905 433 IFGKIRSCKSVAILQMLEK-QMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPR 504 (997)
Q Consensus 433 ~f~~i~Y~Kg~lVL~mLe~-~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~e~v~~~~~~dL~~f~~q 504 (997)
.++ -.|.-.+.+|.-||. +.|+ .|-+-|++=+.+..+ +++.| ++.+. |++++++|+.
T Consensus 147 ~wd-~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y-------~~~~~---~~~l~---G~~v~~LW~e 204 (205)
T PF04450_consen 147 SWD-DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKY-------SSDDF---WKELL---GKPVDELWAE 204 (205)
T ss_pred Ccc-cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCC-------CcHhH---HHHHH---CcCHHHHHhh
Confidence 111 237889999999999 6654 455666665654443 12322 23333 4568888764
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.02 E-value=2.9 Score=50.60 Aligned_cols=226 Identities=18% Similarity=0.153 Sum_probs=129.9
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCC--chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001905 659 MWINQLEKDGDVVAQAQAIAALEALPHL--SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (997)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~--s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (997)
.+...|+ +++-.-|.-|++.|.....+ ...+...+.+.+.|+. .-||..||.+|.++-...++..... ++....
T Consensus 83 ~l~kdl~-~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~--~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~ 158 (526)
T PF01602_consen 83 SLQKDLN-SPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPS--PYVRKKAALALLKIYRKDPDLVEDE-LIPKLK 158 (526)
T ss_dssp HHHHHHC-SSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHH
T ss_pred HHHHhhc-CCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHhccCHHHHHHH-HHHHHh
Confidence 3344443 57889999999999976432 1224445777788764 4899999999999876543322111 333333
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc-cccCC--CChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHh
Q 001905 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV-RAADN--KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSV 813 (997)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~-r~~~g--~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al 813 (997)
+...+++ .-|+.+-..++..+ .+.+. ..-+...+-|.+++ .-.|.|-...+++.|
T Consensus 159 ~lL~d~~--------------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l--------~~~~~~~q~~il~~l 216 (526)
T PF01602_consen 159 QLLSDKD--------------PSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLL--------SDPDPWLQIKILRLL 216 (526)
T ss_dssp HHTTHSS--------------HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHH--------TCCSHHHHHHHHHHH
T ss_pred hhccCCc--------------chhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcc--------cccchHHHHHHHHHH
Confidence 3322322 24777777888888 22222 12233444455555 456677888999999
Q ss_pred hccccCcccHHHH--HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCC-----hhhhhhhhcccCCCCC
Q 001905 814 GELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-----LDQVVKLIKPFRDFNT 886 (997)
Q Consensus 814 ~~~~~~~~~~~~~--~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~ 886 (997)
....... .... ..+++.+..+++ |=...|...|.+.+..+. ...+ .+.+..++ . ..
T Consensus 217 ~~~~~~~--~~~~~~~~~i~~l~~~l~------s~~~~V~~e~~~~i~~l~----~~~~~~~~~~~~L~~lL----~-s~ 279 (526)
T PF01602_consen 217 RRYAPME--PEDADKNRIIEPLLNLLQ------SSSPSVVYEAIRLIIKLS----PSPELLQKAINPLIKLL----S-SS 279 (526)
T ss_dssp TTSTSSS--HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHS----SSHHHHHHHHHHHHHHH----T-SS
T ss_pred HhcccCC--hhhhhHHHHHHHHHHHhh------ccccHHHHHHHHHHHHhh----cchHHHHhhHHHHHHHh----h-cc
Confidence 8764422 2223 457777777777 444556678888877652 2222 12233332 2 33
Q ss_pred hHHHHHHHHHHhhccccccCChHHHHHHHHHHhc--cCccchh
Q 001905 887 IWQVRVEASRALLDLEFHCNGIDSALSLFIKSVE--EEPSLRG 927 (997)
Q Consensus 887 ~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~ 927 (997)
...+|..|+++|..+.......-......+..+. .|+++|.
T Consensus 280 ~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~ 322 (526)
T PF01602_consen 280 DPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRK 322 (526)
T ss_dssp SHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHH
T ss_pred cchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHH
Confidence 4679999999999986543111012222333344 4566665
No 25
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.66 E-value=1.7 Score=38.49 Aligned_cols=87 Identities=28% Similarity=0.346 Sum_probs=62.7
Q ss_pred hHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc
Q 001905 692 NTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV 771 (997)
Q Consensus 692 ~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~ 771 (997)
..|.+.|.+ ...+.||.+|+.+|+++..++. ++.|+++++ +++ ..|+.+...||+.+
T Consensus 2 ~~L~~~l~~-~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~----d~~--------------~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQN-DPDPQVRAEAARALGELGDPEA----IPALIELLK----DED--------------PMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHT-SSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHT----SSS--------------HHHHHHHHHHHHCC
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHc----CCC--------------HHHHHHHHHHHHHh
Confidence 356667733 2489999999999997765543 666766663 221 24899999999998
Q ss_pred cccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhh
Q 001905 772 RAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVG 814 (997)
Q Consensus 772 r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~ 814 (997)
. .+++.+.|.++++. + +|...+.+.+.|||
T Consensus 59 ~------~~~~~~~L~~~l~~---~----~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 G------DPEAIPALIKLLQD---D----DDEVVREAAAEALG 88 (88)
T ss_dssp H------HHHTHHHHHHHHTC--------SSHHHHHHHHHHHH
T ss_pred C------CHHHHHHHHHHHcC---C----CcHHHHHHHHhhcC
Confidence 5 47789999999882 2 24556788888886
No 26
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.49 E-value=4.7 Score=49.25 Aligned_cols=145 Identities=21% Similarity=0.258 Sum_probs=100.7
Q ss_pred CCceeeEecccCchh-HHHHHHcccCChHHHHHHHHHHHcC----CC-------CchhHHhHHHhhhccCcchhHHHHHH
Q 001905 644 EMEYLAEIHFNQPVQ-MWINQLEKDGDVVAQAQAIAALEAL----PH-------LSFNVVNTLNNFLSDSKAFWRVRIEA 711 (997)
Q Consensus 644 d~e~l~~v~~~qp~~-m~~~QL~~drdv~aq~eAi~~l~~~----~~-------~s~~~~~~L~~~l~d~~~f~~VR~~A 711 (997)
=.+||+++-+.+++. ..+-|+-...|+..|.-||+.|... |. .++..++.|...|.|.| ==||-+|
T Consensus 109 ~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr--E~IRNe~ 186 (970)
T KOG0946|consen 109 LGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR--EPIRNEA 186 (970)
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh--hhhchhH
Confidence 468999998888764 3455555668999999888776642 21 11223556777777754 3589999
Q ss_pred HHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccC----CCChHHHHHHHH
Q 001905 712 AYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD----NKSPREAVEFVL 787 (997)
Q Consensus 712 a~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~----g~~p~~v~~fll 787 (997)
..-|......-+.-.-+-+.-.+|-.+ ++.|+.+. |..-.++.-||.
T Consensus 187 iLlL~eL~k~n~~IQKlVAFENaFerL-----------------------------fsIIeeEGg~dGgIVveDCL~ll~ 237 (970)
T KOG0946|consen 187 ILLLSELVKDNSSIQKLVAFENAFERL-----------------------------FSIIEEEGGLDGGIVVEDCLILLN 237 (970)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHH-----------------------------HHHHHhcCCCCCcchHHHHHHHHH
Confidence 998887765433222233334444443 35566553 477889999999
Q ss_pred HHhhhcCCCCCCCChHHHHHHHHHHhhccccC
Q 001905 788 QLLKYNDNNGNPYSDVFWLAALVQSVGELEFG 819 (997)
Q Consensus 788 ~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~ 819 (997)
+|||+|--..|-|--+-||..|.+-|..-.++
T Consensus 238 NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~ 269 (970)
T KOG0946|consen 238 NLLKNNISNQNFFREGSYIPRLLKLLSVFEFG 269 (970)
T ss_pred HHHhhCcchhhHHhccccHHHHHhhcCccccc
Confidence 99999999999999999999998887654443
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=88.35 E-value=3.8 Score=49.50 Aligned_cols=237 Identities=18% Similarity=0.184 Sum_probs=135.2
Q ss_pred CchhHHHHHHcccCChHHHHHHHHHHHcC----CCCchh-HHhHHHhhhccCcchhHHHHHHHHHHHhh-cccccccccH
Q 001905 655 QPVQMWINQLEKDGDVVAQAQAIAALEAL----PHLSFN-VVNTLNNFLSDSKAFWRVRIEAAYALANT-ASEETDWAGL 728 (997)
Q Consensus 655 qp~~m~~~QL~~drdv~aq~eAi~~l~~~----~~~s~~-~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~-~~~~~~~~g~ 728 (997)
++-..-+.++..|++..-|-.|+.++.+. |..... ....|.+.|.|+. .+|+..|+.+|..+ .++.....=+
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~--~~V~~~a~~~l~~i~~~~~~~~~~~ 190 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD--PSVVSAALSLLSEIKCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS--HHHHHHHHHHHHHHHCTHHHHTTHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHccCcchhhhhH
Confidence 34456677888899999999999777653 443323 4678888898765 89999999999999 3332111112
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCCh--HHHHHHHHHHhhhcCCCCCCCChHHHH
Q 001905 729 LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP--REAVEFVLQLLKYNDNNGNPYSDVFWL 806 (997)
Q Consensus 729 ~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p--~~v~~fll~ll~~NdNs~N~ysD~~y~ 806 (997)
+.+.+...+.- +.| .-++|..+.+.+..+-..+...+ ..+.+.|+.+|. .++.--+
T Consensus 191 ~~~~~~L~~~l-----~~~---------~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~--------s~~~~V~ 248 (526)
T PF01602_consen 191 PKLIRILCQLL-----SDP---------DPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ--------SSSPSVV 248 (526)
T ss_dssp HHHHHHHHHHH-----TCC---------SHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHhhhcc-----ccc---------chHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh--------ccccHHH
Confidence 22233222210 111 13578877777776643333333 456777888887 2222233
Q ss_pred HHHHHHhhccccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCC
Q 001905 807 AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNT 886 (997)
Q Consensus 807 a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (997)
-+.+.++..+.. .......++.-+-+++. |...-+-..+|++|.+++......+....+ .+ .+...+.
T Consensus 249 ~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~-~~--~~l~~~~ 316 (526)
T PF01602_consen 249 YEAIRLIIKLSP---SPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPAVFNQSL-IL--FFLLYDD 316 (526)
T ss_dssp HHHHHHHHHHSS---SHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHHHGTHHH-HH--HHHHCSS
T ss_pred HHHHHHHHHhhc---chHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchhhhhhhh-hh--heecCCC
Confidence 344444433322 22356777788887775 333445566777777764321001111111 11 1112233
Q ss_pred hHHHHHHHHHHhhccccccCChHHHHHHHHHHh-cc-Cccchhh
Q 001905 887 IWQVRVEASRALLDLEFHCNGIDSALSLFIKSV-EE-EPSLRGQ 928 (997)
Q Consensus 887 ~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~ 928 (997)
...||..|++.|..+.- ......++.-++.++ +. |+.++..
T Consensus 317 d~~Ir~~~l~lL~~l~~-~~n~~~Il~eL~~~l~~~~d~~~~~~ 359 (526)
T PF01602_consen 317 DPSIRKKALDLLYKLAN-ESNVKEILDELLKYLSELSDPDFRRE 359 (526)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC--HHHHHH
T ss_pred ChhHHHHHHHHHhhccc-ccchhhHHHHHHHHHHhccchhhhhh
Confidence 46799999999999864 233457888888888 55 6766654
No 28
>PTZ00429 beta-adaptin; Provisional
Probab=87.49 E-value=43 Score=42.32 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=38.1
Q ss_pred ccCChHHHHHHHHHHHcCCCCc--hhHHhHHHhhhccCcchhHHHHHHHHHHHhhc
Q 001905 666 KDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (997)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s--~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~ 719 (997)
.|++-.-|--|++.|....... ..+...+.++|.|.. =-||..||.|++|+-
T Consensus 115 ~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~--pYVRKtAalai~Kly 168 (746)
T PTZ00429 115 TNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPD--PYVRKTAAMGLGKLF 168 (746)
T ss_pred CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHH
Confidence 3578888889999998765432 124556788888865 459999999999864
No 29
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.18 E-value=13 Score=45.63 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhhccc----cCCCCh----HHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCcccHHHHHHHH
Q 001905 759 FVLEAIPHAVAMVRA----ADNKSP----REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLL 830 (997)
Q Consensus 759 ~v~~ai~~a~a~~r~----~~g~~p----~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~ 830 (997)
+|..+..-|++.+-. ....|| .++...|.+.|+---+. .|..-+-..|+|||++..+ ..+
T Consensus 412 ~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~LkaLGN~g~~--------~~i 479 (574)
T smart00638 412 YLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK----GDEEEIQLYLKALGNAGHP--------SSI 479 (574)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc----CCchheeeHHHhhhccCCh--------hHH
Confidence 566666666653322 123455 56777777777532222 2333577889999998763 234
Q ss_pred HHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhccccccCChHH
Q 001905 831 KRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDS 910 (997)
Q Consensus 831 ~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 910 (997)
..+..++.-+.=.|. -+-++|+.+|.+++.+ .|....-.++.-|.+.....+||++|+-.|++ +....+
T Consensus 480 ~~l~~~l~~~~~~~~---~iR~~Av~Alr~~a~~----~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~----t~P~~~ 548 (574)
T smart00638 480 KVLEPYLEGAEPLST---FIRLAAILALRNLAKR----DPRKVQEVLLPIYLNRAEPPEVRMAAVLVLME----TKPSVA 548 (574)
T ss_pred HHHHHhcCCCCCCCH---HHHHHHHHHHHHHHHh----CchHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCCHH
Confidence 555666553433333 3456777777766421 23322112334456667778999999999999 433347
Q ss_pred HHHHHHHHhccCccchh
Q 001905 911 ALSLFIKSVEEEPSLRG 927 (997)
Q Consensus 911 ~l~~~~~~~~~~~~~~~ 927 (997)
.|+-+...+..||+.-.
T Consensus 549 ~l~~ia~~l~~E~~~QV 565 (574)
T smart00638 549 LLQRIAELLNKEPNLQV 565 (574)
T ss_pred HHHHHHHHHhhcCcHHH
Confidence 78889999999987554
No 30
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.79 E-value=1.8 Score=53.70 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=73.8
Q ss_pred CCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHH
Q 001905 775 DNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISC 854 (997)
Q Consensus 775 ~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~ 854 (997)
...++.++.+.|.+.|+-.. ...|..=+-..|.|||++..+ .++..+..++.-+. .--..+-++|
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~LkaLgN~g~~--------~~i~~l~~~i~~~~---~~~~~~R~~A 544 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAV----SRGDEEEKIVYLKALGNLGHP--------ESIPVLLPYIEGKE---EVPHFIRVAA 544 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHH----HTT-HHHHHHHHHHHHHHT-G--------GGHHHHHTTSTTSS----S-HHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHh----hccCHHHHHHHHHHhhccCCc--------hhhHHHHhHhhhcc---ccchHHHHHH
Confidence 34455566666666666111 124445677889999998763 23455555555554 3334566788
Q ss_pred HHHHHHHHHHhcCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhccccccCChHHHHHHHHHHhccCccchh
Q 001905 855 IRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRG 927 (997)
Q Consensus 855 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 927 (997)
+.+|.+++ ...|....--++.-|.+.....+||+||+-.|++ +......|+-+...+..||+.-.
T Consensus 545 i~Alr~~~----~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~----~~P~~~~l~~i~~~l~~E~~~QV 609 (618)
T PF01347_consen 545 IQALRRLA----KHCPEKVREILLPIFMNTTEDPEVRIAAYLILMR----CNPSPSVLQRIAQSLWNEPSNQV 609 (618)
T ss_dssp HHTTTTGG----GT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH----T---HHHHHHHHHHHTT-S-HHH
T ss_pred HHHHHHHh----hcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCCCHHHHHHHHHHHhhCchHHH
Confidence 88877652 3344322112233455667778999999999998 43334778888888999998554
No 31
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.17 E-value=1e+02 Score=36.84 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhcc
Q 001905 778 SPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (997)
Q Consensus 778 ~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (997)
...+..+||.|++|||-+.- |.--+..++..+..+
T Consensus 150 ~l~~ll~~l~nviKfn~~~l----~e~~i~~lv~~i~~i 184 (464)
T PF11864_consen 150 NLSDLLQFLVNVIKFNFNYL----DEDEISSLVDQICTI 184 (464)
T ss_pred hHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHHH
Confidence 45578889999999876533 334567777776654
No 32
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=77.92 E-value=2.7 Score=28.78 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001905 707 VRIEAAYALANTASEETDWAGLLHLVKFYK 736 (997)
Q Consensus 707 VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (997)
||.+||.+|+++..++. ++.|+++.+
T Consensus 1 VR~~Aa~aLg~igd~~a----i~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRA----IPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHH----HHHHHHHhc
Confidence 79999999999998653 777777654
No 33
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=76.66 E-value=2.5 Score=29.54 Aligned_cols=27 Identities=41% Similarity=0.421 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHhhcccccccccHHHHHHHH
Q 001905 705 WRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (997)
Q Consensus 705 ~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f 735 (997)
|.||.+||.+|+++.+++. ...|+++.
T Consensus 1 ~~vR~~aa~aLg~~~~~~a----~~~L~~~l 27 (30)
T smart00567 1 PLVRHEAAFALGQLGDEEA----VPALIKAL 27 (30)
T ss_pred CHHHHHHHHHHHHcCCHhH----HHHHHHHh
Confidence 5799999999999877653 56666554
No 34
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=74.58 E-value=1.8e+02 Score=34.13 Aligned_cols=200 Identities=16% Similarity=0.052 Sum_probs=122.7
Q ss_pred cccCchhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhc-cCcchhHHHHHHHHHHHhhcccccccccHHH
Q 001905 652 HFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLS-DSKAFWRVRIEAAYALANTASEETDWAGLLH 730 (997)
Q Consensus 652 ~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~-d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~ 730 (997)
-+..|+|-|..=-+-|.-..|+++++..... .....|...|. |+. =+||.+|+.+|.....+. ++..
T Consensus 23 a~~~p~~~l~~la~ldeRL~AhLdgL~~~G~------~a~~~L~~aL~~d~~--~ev~~~aa~al~~~~~~~----~~~~ 90 (410)
T TIGR02270 23 ALVAPDYVLEDLAELEERLLAHVDGLVLAGK------AATELLVSALAEADE--PGRVACAALALLAQEDAL----DLRS 90 (410)
T ss_pred HhcCCCCCHHHHHhHHHHHHHHHHHHHHhhH------hHHHHHHHHHhhCCC--hhHHHHHHHHHhccCChH----HHHH
Confidence 4556777665555556678888888877652 35677878883 443 478889999998665443 2566
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHH
Q 001905 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALV 810 (997)
Q Consensus 731 L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li 810 (997)
|+++... ++ + -|+.++..||+.+. ++.+...|+.+|+ -.|.+.+++.+
T Consensus 91 L~~~L~d----~~-----~---------~vr~aaa~ALg~i~------~~~a~~~L~~~L~--------~~~p~vR~aal 138 (410)
T TIGR02270 91 VLAVLQA----GP-----E---------GLCAGIQAALGWLG------GRQAEPWLEPLLA--------ASEPPGRAIGL 138 (410)
T ss_pred HHHHhcC----CC-----H---------HHHHHHHHHHhcCC------chHHHHHHHHHhc--------CCChHHHHHHH
Confidence 6665542 11 1 27899999998875 5678888999995 23456888888
Q ss_pred HHhhccccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCChHHH
Q 001905 811 QSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQV 890 (997)
Q Consensus 811 ~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 890 (997)
.+|+.-.. +. .. .+...++ -+||. |-.+++++|..++. ...+| .+... ..+.-..|
T Consensus 139 ~al~~r~~--~~---~~----~L~~~L~----d~d~~--Vra~A~raLG~l~~--~~a~~--~L~~a-----l~d~~~~V 194 (410)
T TIGR02270 139 AALGAHRH--DP---GP----ALEAALT----HEDAL--VRAAALRALGELPR--RLSES--TLRLY-----LRDSDPEV 194 (410)
T ss_pred HHHHhhcc--Ch---HH----HHHHHhc----CCCHH--HHHHHHHHHHhhcc--ccchH--HHHHH-----HcCCCHHH
Confidence 99986332 11 12 2223332 34443 56677777776532 11122 12111 22344789
Q ss_pred HHHHHHHhhccccccCChHHHHHHHHH-HhccCcc
Q 001905 891 RVEASRALLDLEFHCNGIDSALSLFIK-SVEEEPS 924 (997)
Q Consensus 891 r~~a~~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~ 924 (997)
|.+|..+|..++- ..++..++. ..+..+.
T Consensus 195 R~aA~~al~~lG~-----~~A~~~l~~~~~~~g~~ 224 (410)
T TIGR02270 195 RFAALEAGLLAGS-----RLAWGVCRRFQVLEGGP 224 (410)
T ss_pred HHHHHHHHHHcCC-----HhHHHHHHHHHhccCcc
Confidence 9999999988643 456666665 3344433
No 35
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=73.47 E-value=29 Score=36.25 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 001905 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (997)
Q Consensus 346 ~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~ 388 (997)
-.++|||+.|-|.-. ..-.--+.++-|||...++++|++..
T Consensus 94 gsiLAHE~mHa~Lrl--~g~~~L~~~vEEGiCqvla~~wL~~~ 134 (212)
T PF12315_consen 94 GSILAHELMHAWLRL--NGFPNLSPEVEEGICQVLAYLWLESE 134 (212)
T ss_pred hhHHHHHHHHHHhcc--cCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 457999999999732 22223367999999999999998753
No 36
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=72.00 E-value=9.4 Score=48.91 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=35.7
Q ss_pred hccCccchhhhHHHHhhhccchhccCCCCCCCcCcHHHHHHHHHHhccccccchhhhhhHHHH
Q 001905 919 VEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGI 981 (997)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 981 (997)
+.+||.+-.+--|+-....+|.|=|...+ +..++.-|-.+.|.. ||+||+..|+=
T Consensus 586 Llsd~~~~Vkr~Lle~i~~LC~FFGk~ks-----ND~iLshLiTfLNDk---Dw~LR~aFfds 640 (1431)
T KOG1240|consen 586 LLSDSPPIVKRALLESIIPLCVFFGKEKS-----NDVILSHLITFLNDK---DWRLRGAFFDS 640 (1431)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhhhccc-----ccchHHHHHHHhcCc---cHHHHHHHHhh
Confidence 34555544433345567888887655544 345666677777865 99999998873
No 37
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=71.27 E-value=2e+02 Score=33.21 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=30.8
Q ss_pred EecCCCceeeEecccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001905 640 RADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (997)
Q Consensus 640 r~Dpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (997)
-+--+|.=--+++.++++..+...+++|.|-..|-||.+.|..
T Consensus 70 SllRgFSAPV~l~~~~s~~eL~~L~~~D~D~FnRWdA~Q~L~~ 112 (367)
T PF11940_consen 70 SLLRGFSAPVKLEYDYSDEELAFLAAHDSDPFNRWDAAQTLAT 112 (367)
T ss_dssp EESTTG-SSSEEE----HHHHHHHHHH-SSHHHHHHHHHHHHH
T ss_pred ehhcCcccceEecCCCCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 3444666666778889999999999999999999999998874
No 38
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=65.86 E-value=8.3 Score=27.20 Aligned_cols=25 Identities=36% Similarity=0.275 Sum_probs=19.8
Q ss_pred HHHhhhccCcchhHHHHHHHHHHHhhc
Q 001905 693 TLNNFLSDSKAFWRVRIEAAYALANTA 719 (997)
Q Consensus 693 ~L~~~l~d~~~f~~VR~~Aa~aL~~~~ 719 (997)
.|.+.+.|+ -+.||..|+.+|+.++
T Consensus 4 ~l~~~l~D~--~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDP--SPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-S--SHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 456677775 8999999999999875
No 39
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=65.53 E-value=3.6e+02 Score=34.64 Aligned_cols=243 Identities=18% Similarity=0.194 Sum_probs=129.0
Q ss_pred ccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC
Q 001905 699 SDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS 778 (997)
Q Consensus 699 ~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~ 778 (997)
.|+..-|+||-+||++|..+-+.. ...|.++|+ ..=|.-+++.++..-..
T Consensus 340 DDeD~SWkVRRaAaKcl~a~IsSR-----~E~L~~~~q-------------------------~l~p~lI~RfkEREEnV 389 (1233)
T KOG1824|consen 340 DDEDMSWKVRRAAAKCLEAVISSR-----LEMLPDFYQ-------------------------TLGPALISRFKEREENV 389 (1233)
T ss_pred cccchhHHHHHHHHHHHHHHHhcc-----HHHHHHHHH-------------------------HhCHHHHHHHHHHhhhH
Confidence 356789999999999999776542 455555555 44466778887776667
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCcccHHH----HHHHHHHHHHHHhcccccCCCCchhHHHH
Q 001905 779 PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILF----LSSLLKRIDRLLQFDRLMPSYNGILTISC 854 (997)
Q Consensus 779 p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~----~~~~~~ei~r~~~~d~~~psy~~~vt~~~ 854 (997)
-.++..-++++|+.--+-..-|.|+==.-. +.... +... .-.+++.|.|.++ ++=+|+ -++|
T Consensus 390 k~dvf~~yi~ll~qt~~~~~~~~d~d~~e~-----~g~~s---~~~~L~~~~~~iVkai~~qlr-~ks~kt-----~~~c 455 (1233)
T KOG1824|consen 390 KADVFHAYIALLKQTRPVIEVLADNDAMEQ-----GGTPS---DLSMLSDQVPLIVKAIQKQLR-EKSVKT-----RQGC 455 (1233)
T ss_pred HHHHHHHHHHHHHcCCCCcccccCchhhhc-----cCCcc---chHHHHhhhHHHHHHHHHHHh-hccccc-----hhhH
Confidence 778888888898854444433433211111 11110 1111 2248888999988 666772 3578
Q ss_pred HHHHHHHHHHhcCCC--Chhh-hhhhhcccCCCCChHHHHHHHHHHhhccccccCCh------HHHHHHHHHHhccCccc
Q 001905 855 IRTLTQIALKLSGFI--SLDQ-VVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEEEPSL 925 (997)
Q Consensus 855 l~~~~~l~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~------~~~l~~~~~~~~~~~~~ 925 (997)
+.-|..|.-.+-|.+ ..+. +=.....+.+.......++.|+-+|...-. ..+. -.+|.-.+...-.||+.
T Consensus 456 f~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~-s~~p~~fhp~~~~Ls~~v~~aV~d~fy 534 (1233)
T KOG1824|consen 456 FLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALI-SHPPEVFHPHLSALSPPVVAAVGDPFY 534 (1233)
T ss_pred HHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHh-cCChhhcccchhhhhhHHHHHhcCchH
Confidence 888877753222211 1111 112234555666678899999888776421 1111 13444444444567775
Q ss_pred hhhh---HHHHhhhcc---chhccCCCCCCCcCcHHHHHHHHHHhccccccchhhhh-hHHHHHHHHhC
Q 001905 926 RGQV---KLGIHAMRI---CQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRH-HLFGILQILAG 987 (997)
Q Consensus 926 ~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~-~~~~~~~~l~g 987 (997)
.... -++...++. .+--.+.+ .+.....-..--+-+|++...---+|+|- +.+..+-+++|
T Consensus 535 KisaEAL~v~~~lvkvirpl~~~~~~d-~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg 602 (1233)
T KOG1824|consen 535 KISAEALLVCQQLVKVIRPLQPPSSFD-ASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG 602 (1233)
T ss_pred hhhHHHHHHHHHHHHHhcccCCCccCC-CChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh
Confidence 5422 112111111 11111111 22344444455556666644433355553 23444555555
No 40
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=63.53 E-value=29 Score=36.28 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhhhccccc----CCCCChhHHHHHHHHHHHHHHH
Q 001905 345 TSIKLSFALARQWFGVYIT----PELPNDEWLLDGLAGFLTDSFI 385 (997)
Q Consensus 345 ~~~~iaHElAHQWFG~lVt----~~~w~d~WLnEGfA~Yl~~~~~ 385 (997)
...++|||+.|.+--..+. ..+--|..+.||+|.+++....
T Consensus 65 l~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~ 109 (195)
T PF10026_consen 65 LPALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELY 109 (195)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHc
Confidence 3458999999996433332 1233467899999999876543
No 41
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=62.52 E-value=1.3e+02 Score=38.25 Aligned_cols=113 Identities=12% Similarity=0.233 Sum_probs=59.2
Q ss_pred cEEEEEcCCchhHHH--------HHHHHHHHHHHHHHHhhCCCC-CCCC-----ccEEEECCCCcccccccccchhhccc
Q 001905 265 LMSHICLPANVSKIH--------NTVEFFHNAFSHYETYLDAKF-PFGS-----YKQVFLAPEMAVSSSTFGAAMGIFSS 330 (997)
Q Consensus 265 ~v~~~~~p~~~~~~~--------~~~~~~~~~l~~~e~~~g~~Y-P~~k-----~~~V~vp~~~~~~~~~~gagL~i~~~ 330 (997)
.|.+..+|.+.+.+. ...++=..++++|.++.|..+ |-.. -+.-|+- ++ ..|+|-..|+.
T Consensus 144 ~i~lLVP~~Dk~~l~~~~~~~l~~L~~~Y~~i~~~Yd~l~Gl~~~~~~~~~~n~~~kYF~K-----AD-~~G~G~AYY~~ 217 (775)
T PF03272_consen 144 YIQLLVPPADKPNLNNKDFKSLDELIDFYNDIFKFYDDLTGLSDDPSDPVDKNFNNKYFAK-----AD-KSGPGAAYYGS 217 (775)
T ss_pred EEEEEeCcchHHHHhhhcccCHHHHHHHHHHHHHHHHhhhCCCCCCCcccccccccceEEE-----ec-CCCCCCccccc
Confidence 466677777665554 445666788888888888533 2211 1222332 11 13444444443
Q ss_pred cccccccc-chhhhh----hHHHHHHHHHHhhhcccccC-CCCChhHHHHHHHHHHHHHHH
Q 001905 331 QILYDEKV-IDQAID----TSIKLSFALARQWFGVYITP-ELPNDEWLLDGLAGFLTDSFI 385 (997)
Q Consensus 331 ~lL~~~~~-~d~~~~----~~~~iaHElAHQWFG~lVt~-~~w~d~WLnEGfA~Yl~~~~~ 385 (997)
...-.... .. .+- +-=.+-|||+|.+=|.++.. ..+.+.| |-=+|.++++.++
T Consensus 218 ~w~a~ss~s~~-~~L~~~~~nW~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~ 276 (775)
T PF03272_consen 218 NWTAQSSSSLS-FYLNPSPTNWGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYM 276 (775)
T ss_pred cceecCchhHH-HHhCCCCCCchhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhc
Confidence 32221111 11 110 11157899999998888733 3344555 4445566555544
No 42
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.50 E-value=1.6e+02 Score=36.87 Aligned_cols=40 Identities=8% Similarity=0.119 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhccccccCChHHHHHHHHHHhcc-Cccchhh
Q 001905 888 WQVRVEASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRGQ 928 (997)
Q Consensus 888 ~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 928 (997)
.-+|..|+|.+..+.- ..-....++-+++++++ |+..++.
T Consensus 364 ~SIkrralELs~~lvn-~~Nv~~mv~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 364 VSIKRRALELSYALVN-ESNVRVMVKELLEFLESSDEDFKAD 404 (866)
T ss_pred HHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 3578889998888743 23334556666666654 5666554
No 43
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=62.49 E-value=20 Score=28.65 Aligned_cols=44 Identities=32% Similarity=0.335 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCC--------CchhHHhHHHhhhccCcchhHHHHHHHHHHHhh
Q 001905 673 QAQAIAALEALPH--------LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANT 718 (997)
Q Consensus 673 q~eAi~~l~~~~~--------~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~ 718 (997)
|..|+.+|+.... ....+...|...|.|+.. .||..|+.||+++
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 4556666654311 112356678888988766 9999999999863
No 44
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=61.56 E-value=13 Score=40.11 Aligned_cols=53 Identities=26% Similarity=0.221 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc
Q 001905 669 DVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET 723 (997)
Q Consensus 669 dv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~ 723 (997)
.-.-|.|+.--|.+.. |..++-.|.+.|.|+.----||.|||+||+.+++++.
T Consensus 200 SalfrhEvAfVfGQl~--s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQLQ--SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred hHHHHHHHHHHHhhcc--chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 5556777777777654 3345677888889988888999999999999999875
No 45
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=60.81 E-value=11 Score=42.49 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 001905 344 DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (997)
Q Consensus 344 ~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~ 388 (997)
+...+|-||||||=+.. -+|.=+||+||++.+..-+++.
T Consensus 164 ~LA~LIfHELaHq~~Yv------~~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 164 ELARLIFHELAHQTLYV------KGDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHHhhceeec------CCCchhhHHHHHHHHHHHHHHH
Confidence 34568999999994322 2477899999999987655443
No 46
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=56.36 E-value=18 Score=35.89 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHHHHH-HhhCCCCCCCCccEEEECCCCcccccccccchhhc-ccccccccccchh--hhhhHHHHHHHHHHhhhc
Q 001905 287 NAFSHYE-TYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVIDQ--AIDTSIKLSFALARQWFG 359 (997)
Q Consensus 287 ~~l~~~e-~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagL~i~-~~~lL~~~~~~d~--~~~~~~~iaHElAHQWFG 359 (997)
+.++-++ .+|+.++|-+ .+.+-. .+ ... +|.-.. ...+-+++...+. ......+|.|||||.|..
T Consensus 5 ~~~~~~n~~~F~~~l~~~--~i~w~~-r~----~~~-~G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHP--KVVWNK-RL----RKT-GGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCC--EEEEeh-hh----hhh-hHHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHHH
Confidence 4444455 7888777765 333322 11 111 121222 2234444444331 123345899999999975
No 47
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=55.69 E-value=13 Score=39.70 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHH
Q 001905 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKK 387 (997)
Q Consensus 346 ~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~ 387 (997)
..+|-||||||=|... +|.=+||+||++.+-.-+++
T Consensus 198 A~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~ 233 (376)
T COG4324 198 ASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRK 233 (376)
T ss_pred HHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHH
Confidence 4589999999976543 57789999999998765544
No 48
>PTZ00429 beta-adaptin; Provisional
Probab=55.21 E-value=2.3e+02 Score=36.08 Aligned_cols=219 Identities=15% Similarity=0.182 Sum_probs=110.9
Q ss_pred cCChHHHHHHHHHHHcCCCCch-hHHhHHH---hhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCC
Q 001905 667 DGDVVAQAQAIAALEALPHLSF-NVVNTLN---NFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDE 742 (997)
Q Consensus 667 drdv~aq~eAi~~l~~~~~~s~-~~~~~L~---~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~ 742 (997)
..+-..|+-+++.+...-...+ ....-+. -...|+ -| ||.++...|.+++++.+ ...+++-+++.- .
T Consensus 308 ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp--~y-IK~~KLeIL~~Lane~N----v~~IL~EL~eYa--~ 378 (746)
T PTZ00429 308 RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDP--PF-VKLEKLRLLLKLVTPSV----APEILKELAEYA--S 378 (746)
T ss_pred CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCc--HH-HHHHHHHHHHHHcCccc----HHHHHHHHHHHh--h
Confidence 3567778877765543211111 1111111 112443 34 99999999999999875 555666666521 1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCccc
Q 001905 743 NIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQS 822 (997)
Q Consensus 743 ~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~ 822 (997)
+ .| . =| .+..++||+.+=-.-...-..+.++|+++|.. +. . |++..|.++.++.-....
T Consensus 379 d------~D---~--ef-~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~---~~-----~-~v~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 379 G------VD---M--VF-VVEVVRAIASLAIKVDSVAPDCANLLLQIVDR---RP-----E-LLPQVVTAAKDIVRKYPE 437 (746)
T ss_pred c------CC---H--HH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHhcC---Cc-----h-hHHHHHHHHHHHHHHCcc
Confidence 1 11 1 13 35556888877443334456788899999962 11 2 566667766655211111
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCchhHH-HHHHHHHHHHHHhcCCCCh--hhhhhhhcccCCCCChHHHHHHHHHHhh
Q 001905 823 ILFLSSLLKRIDRLLQFDRLMPSYNGILTI-SCIRTLTQIALKLSGFISL--DQVVKLIKPFRDFNTIWQVRVEASRALL 899 (997)
Q Consensus 823 ~~~~~~~~~ei~r~~~~d~~~psy~~~vt~-~~l~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vr~~a~~~l~ 899 (997)
. .++..+-.....|.+ +.--.. +++=.|.+. +..|+. +.+..++..|... ...||++.+.+.+
T Consensus 438 ~----~il~~L~~~~~~~~i----~e~~AKaaiiWILGEy----~~~I~~a~~~L~~~i~~f~~E--~~~VqlqlLta~v 503 (746)
T PTZ00429 438 L----LMLDTLVTDYGADEV----VEEEAKVSLLWMLGEY----CDFIENGKDIIQRFIDTIMEH--EQRVQLAILSAAV 503 (746)
T ss_pred H----HHHHHHHHhhccccc----ccHHHHHHHHHHHHhh----HhhHhhHHHHHHHHHhhhccC--CHHHHHHHHHHHH
Confidence 1 122222211111211 111111 222222222 222322 1233444444442 3689999999999
Q ss_pred ccccccCC-hHHHHHHHHHHh-c--cCccchhhh
Q 001905 900 DLEFHCNG-IDSALSLFIKSV-E--EEPSLRGQV 929 (997)
Q Consensus 900 ~~~~~~~~-~~~~l~~~~~~~-~--~~~~~~~~~ 929 (997)
.+.+...+ ....+..+|..+ + .||.+|.|.
T Consensus 504 Klfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA 537 (746)
T PTZ00429 504 KMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRA 537 (746)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHH
Confidence 88766553 234455566443 3 458888764
No 49
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.55 E-value=59 Score=36.75 Aligned_cols=121 Identities=24% Similarity=0.304 Sum_probs=72.0
Q ss_pred hHHhHHHhhhccCcchhHHHHHHHHHHHhhcccc------cccccHHHHHHHHHh---------cCCCCCCCCCCCCC--
Q 001905 689 NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE------TDWAGLLHLVKFYKS---------RRFDENIGLPRPND-- 751 (997)
Q Consensus 689 ~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~------~~~~g~~~L~~~f~~---------~~~~~~~~~p~~Nd-- 751 (997)
..+.+|...+.| ---+|.|+|+.||...+++. +.-.|+++|++..++ .+|..+..|---|.
T Consensus 251 ~lv~~Lv~Lmd~--~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l 328 (550)
T KOG4224|consen 251 KLVPALVDLMDD--GSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL 328 (550)
T ss_pred chHHHHHHHHhC--CChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc
Confidence 356777766655 36799999999999988753 233469999988876 35654433211111
Q ss_pred -----CC----Ch---HH-HHHHH------------------------HHHHHHhhccccCCCChHHHHH---HHHHHhh
Q 001905 752 -----FR----DF---SE-YFVLE------------------------AIPHAVAMVRAADNKSPREAVE---FVLQLLK 791 (997)
Q Consensus 752 -----F~----d~---~~-y~v~~------------------------ai~~a~a~~r~~~g~~p~~v~~---fll~ll~ 791 (997)
|- +. .+ --+|+ |||+-+..++|. |-+++. --+-+|.
T Consensus 329 I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~----pvsvqseisac~a~La 404 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG----PVSVQSEISACIAQLA 404 (550)
T ss_pred eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC----ChhHHHHHHHHHHHHH
Confidence 11 00 00 01222 333333344331 333333 3456889
Q ss_pred hcCCCCCCCChHHHHHHHHHHhhc
Q 001905 792 YNDNNGNPYSDVFWLAALVQSVGE 815 (997)
Q Consensus 792 ~NdNs~N~ysD~~y~a~li~al~~ 815 (997)
||||++..++|+--+-.||.=+++
T Consensus 405 l~d~~k~~lld~gi~~iLIp~t~s 428 (550)
T KOG4224|consen 405 LNDNDKEALLDSGIIPILIPWTGS 428 (550)
T ss_pred hccccHHHHhhcCCcceeecccCc
Confidence 999999999998877777766554
No 50
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=52.38 E-value=1.4e+02 Score=33.72 Aligned_cols=16 Identities=38% Similarity=0.316 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHhhccc
Q 001905 887 IWQVRVEASRALLDLE 902 (997)
Q Consensus 887 ~~~vr~~a~~~l~~~~ 902 (997)
-..+|.++-..+..++
T Consensus 288 ~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 288 ANAVRLEAALALGQIG 303 (335)
T ss_pred hhhHHHHHHHHHHhhc
Confidence 3567777777777654
No 51
>PRK04860 hypothetical protein; Provisional
Probab=43.29 E-value=55 Score=33.08 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCcccccccccchhhc-ccccccccccch--hhhhhHHHHHHHHHHhhh
Q 001905 282 VEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVID--QAIDTSIKLSFALARQWF 358 (997)
Q Consensus 282 ~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagL~i~-~~~lL~~~~~~d--~~~~~~~~iaHElAHQWF 358 (997)
...+...+..-+++||.|||-+... |-.- ... ||...+ +..+=++|.... .......+|+|||||-|-
T Consensus 6 ~~~~~~~~~~a~~~f~~~f~~p~~~--f~~R------~rt-aG~~~l~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 6 MRRLRECLAQANLYFKRTFPEPKVS--YTQR------GTS-AGTAWLQSNEIRLNPVLLLENQQAFIDEVVPHELAHLLV 76 (160)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEEE--Eeec------chh-hcchhHhcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHH
Confidence 3445556666677888877765432 2111 111 232222 222333333211 112234589999999873
No 52
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=40.30 E-value=1.1e+03 Score=31.66 Aligned_cols=286 Identities=15% Similarity=0.123 Sum_probs=150.7
Q ss_pred hHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHh-------hhccCcchhHHHHHHHHHHHhhcccccccccHHH
Q 001905 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNN-------FLSDSKAFWRVRIEAAYALANTASEETDWAGLLH 730 (997)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~-------~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~ 730 (997)
-+.-+=++.=+-....++|++.|.....-. ..-..|.| .++|+ .-.||+.|...|+++-..-....-..
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~Ds--~a~Vra~Al~Tlt~~L~~Vr~~~~~d- 500 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMDS--EADVRATALETLTELLALVRDIPPSD- 500 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcCc--hHHHHHHHHHHHHHHHhhccCCCccc-
Confidence 456667788888889999999888653211 11123333 35663 77999999999998643211000000
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHhhccccCCCChHHHHHHHHHH--hhhc--CCCCCCCChHHH
Q 001905 731 LVKFYKSRRFDENIGLPRPNDFRDF-SEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQL--LKYN--DNNGNPYSDVFW 805 (997)
Q Consensus 731 L~~~f~~~~~~~~~~~p~~NdF~d~-~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~l--l~~N--dNs~N~ysD~~y 805 (997)
.++|.+.- +| .=|.|.+= ..=.|+=++...||.+= .-|-+||.-- ++-| +|.-|.=
T Consensus 501 -aniF~eYl-fP-----~L~~l~~d~~~~~vRiayAsnla~LA-------~tA~rFle~~q~~~~~g~~n~~nse----- 561 (1431)
T KOG1240|consen 501 -ANIFPEYL-FP-----HLNHLLNDSSAQIVRIAYASNLAQLA-------KTAYRFLELTQELRQAGMLNDPNSE----- 561 (1431)
T ss_pred -chhhHhhh-hh-----hhHhhhccCccceehhhHHhhHHHHH-------HHHHHHHHHHHHHHhcccccCcccc-----
Confidence 12333321 11 11111100 11123344544454442 2456675433 3333 3333331
Q ss_pred HHHHHHHhhccccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCC-ChhhhhhhhcccCCC
Q 001905 806 LAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI-SLDQVVKLIKPFRDF 884 (997)
Q Consensus 806 ~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 884 (997)
+..+...+... .-+-..+++..--|-.|. ..+|-.|-|+.|+.|+. +-|.. ..|-++..+-.|.+.
T Consensus 562 --t~~~~~~~~~~-----~~L~~~V~~~v~sLlsd~-----~~~Vkr~Lle~i~~LC~-FFGk~ksND~iLshLiTfLND 628 (1431)
T KOG1240|consen 562 --TAPEQNYNTEL-----QALHHTVEQMVSSLLSDS-----PPIVKRALLESIIPLCV-FFGKEKSNDVILSHLITFLND 628 (1431)
T ss_pred --cccccccchHH-----HHHHHHHHHHHHHHHcCC-----chHHHHHHHHHHHHHHH-HhhhcccccchHHHHHHHhcC
Confidence 11111111110 112222333333333332 27888888999988875 44544 445444555566664
Q ss_pred CChHHHHHHHHHHhhccccccC--ChHHHHHHHHHHhccCccchhhhHHHHhhhccchhccCCCCCCCcCcHHHHHHHHH
Q 001905 885 NTIWQVRVEASRALLDLEFHCN--GIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNL 962 (997)
Q Consensus 885 ~~~~~vr~~a~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (997)
. -+.+|-+=|+.++-+....+ +..+.|.=+|.-.-+|+..-. ...+++-+.+--+ .+-|.++.|.+.+..
T Consensus 629 k-Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~V----iv~aL~~ls~Lik---~~ll~K~~v~~i~~~ 700 (1431)
T KOG1240|consen 629 K-DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAV----IVSALGSLSILIK---LGLLRKPAVKDILQD 700 (1431)
T ss_pred c-cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhh----HHHHHHHHHHHHH---hcccchHHHHHHHHh
Confidence 4 78999999999997754432 234555545555445544222 1122222111001 226888999999888
Q ss_pred HhccccccchhhhhhHHHHHHHHhC
Q 001905 963 LESRIAFNNVFLRHHLFGILQILAG 987 (997)
Q Consensus 963 ~~~~~~~~~~~lr~~~~~~~~~l~g 987 (997)
-.-=-++-|.-.|+.++++...-+.
T Consensus 701 v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 701 VLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred hhhheeCchHHHHHHHHHHHHHHHh
Confidence 7777778889999999998776553
No 53
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=38.95 E-value=4.9e+02 Score=31.80 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=32.8
Q ss_pred HHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccc
Q 001905 678 AALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWA 726 (997)
Q Consensus 678 ~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~ 726 (997)
++++.+|+.+..+.+++.+..+|+. -.||++|.+.|..+......|.
T Consensus 48 kffk~FP~l~~~Ai~a~~DLcEDed--~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 48 KFFKHFPDLQEEAINAQLDLCEDED--VQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp HHHCC-GGGHHHHHHHHHHHHT-SS--HHHHHHHHHHGGGG--T--T-H
T ss_pred HHHhhChhhHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHhHHHHH
Confidence 5666778888888899999999874 6799999999998776544444
No 54
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.60 E-value=5.7e+02 Score=33.52 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=50.3
Q ss_pred CchhHHHHHHcccCChHHHHHHHHHHHcCCCCch--------hHHhHHHhhhccCcchhHHHHHHHHHHHhhcccc
Q 001905 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSF--------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE 722 (997)
Q Consensus 655 qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~--------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~ 722 (997)
-|-+.|+.++-+..|.--|..|+.+|+-...++. .+..+....|.|+ -=|||-+|+.|++++++.-
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp--hprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP--HPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHhhhhhh
Confidence 4688899999999999999999888875422222 2445556667775 6799999999999999763
No 55
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=37.70 E-value=43 Score=29.57 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=34.0
Q ss_pred HHHHHHHhhCCCCCCCCccEEEECCCCcccccccccchhhcccccccccccchh-hhhhHHHHHHHHHHhh
Q 001905 288 AFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQ-AIDTSIKLSFALARQW 357 (997)
Q Consensus 288 ~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagL~i~~~~lL~~~~~~d~-~~~~~~~iaHElAHQW 357 (997)
+-..+|..||.+ |+...+-.=|.. .......+|--.+..+.+.+.+....+ .-....+|+|||+|=|
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a-~~~~~~~~A~A~T~G~~I~f~~g~~~~~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAA-SRAAAALGARAFTVGNDIYFAPGKYNPDSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCch-hhhhhccCCeEEEECCEEEEcCCCcCCCCCCcchhHhHHHHHHH
Confidence 446678899854 666655432210 001122333233445556554433211 1234568999999964
No 56
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=37.52 E-value=65 Score=33.56 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCccccccccc----chhhccccccc-ccccchhhhhhHHHHHHHHH
Q 001905 280 NTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILY-DEKVIDQAIDTSIKLSFALA 354 (997)
Q Consensus 280 ~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga----gL~i~~~~lL~-~~~~~d~~~~~~~~iaHElA 354 (997)
.+...+.+.++.|++.+|.++ +++. +- .| ..-||. |.++++..|+. ++.. ...+|+||||
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~--~~i~---ir-~~---ksrWGsc~~~~~I~ln~~L~~~P~~~------idYVvvHEL~ 173 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLPP--PKIK---IR-DM---KSRWGSCSSKGNITLNWRLVMAPPEV------IDYVVVHELC 173 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ceEE---Ee-eh---hhccccCCCCCcEEeecccccCCccH------HHHHHHHHHH
Confidence 455777888889999988643 3333 32 22 123443 34555555543 3333 2458999999
Q ss_pred Hhhhcc
Q 001905 355 RQWFGV 360 (997)
Q Consensus 355 HQWFG~ 360 (997)
|-..-|
T Consensus 174 Hl~~~n 179 (205)
T PF01863_consen 174 HLRHPN 179 (205)
T ss_pred HhccCC
Confidence 987654
No 57
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=35.93 E-value=14 Score=42.77 Aligned_cols=70 Identities=29% Similarity=0.325 Sum_probs=47.2
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccH----HHHHHHHHhcCCCCCCCCCCCCCCCChHHHH----HH
Q 001905 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGL----LHLVKFYKSRRFDENIGLPRPNDFRDFSEYF----VL 761 (997)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~----~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~----v~ 761 (997)
+-++|...+.+. .=++||+.||-+|+.-+..+....-+ ..|+.+ +.+.|+|-+|-+|- ++
T Consensus 574 ~F~~L~~Lv~~~-~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~a-----------Li~s~~~v~f~eY~~~Dsl~ 641 (728)
T KOG4535|consen 574 AFNALTSLVTSC-KNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTA-----------LQKSEDTIDFLEYKYCDSLR 641 (728)
T ss_pred HHHHHHHHHHHh-ccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 345666666664 46799999999999988876433322 233333 44789999999996 46
Q ss_pred HHHHHHHhhc
Q 001905 762 EAIPHAVAMV 771 (997)
Q Consensus 762 ~ai~~a~a~~ 771 (997)
+.||.|+..+
T Consensus 642 ~q~c~av~hl 651 (728)
T KOG4535|consen 642 TQICQALIHL 651 (728)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 58
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.30 E-value=6.9e+02 Score=28.11 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=69.6
Q ss_pred ccCChHHHHHHHHHHHcCC--------CCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccc-cccccHHHHHHHHH
Q 001905 666 KDGDVVAQAQAIAALEALP--------HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-TDWAGLLHLVKFYK 736 (997)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~--------~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~-~~~~g~~~L~~~f~ 736 (997)
++..---|..|++.|-.+- ..+......|..-+++... --.||.||.+.+-.+ ..-.=+..|+|..-
T Consensus 13 ~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ll~~~~k~l~ 88 (353)
T KOG2973|consen 13 HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKKLLQDLLKVLM 88 (353)
T ss_pred ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444455666776555432 1234455667777777655 456788888876543 11111111222222
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccC-----CC-ChHHHHHHHHHHh-hhcCCCCCCCChHHHHHHH
Q 001905 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD-----NK-SPREAVEFVLQLL-KYNDNNGNPYSDVFWLAAL 809 (997)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~-----g~-~p~~v~~fll~ll-~~NdNs~N~ysD~~y~a~l 809 (997)
..-.+|.+.+-+ +-+.+-.++|+.++.- .. -+.+ .=|.++. ++-|-+.|.|.-=.|+|.+
T Consensus 89 ~~~~~p~~~lad-----------~~cmlL~NLs~~~~~~~~ll~~~~~~~~--~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 89 DMLTDPQSPLAD-----------LICMLLSNLSRDDDEVAALLTNLTEKKD--SGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHhcCcccchHH-----------HHHHHHHHhccCchHHHHHHHhcccccc--cchHHHHHHHhCcccccccchhHHHHH
Confidence 222333332222 2333334444333210 00 0111 2244444 4567888999888999999
Q ss_pred HHHhhccccC
Q 001905 810 VQSVGELEFG 819 (997)
Q Consensus 810 i~al~~~~~~ 819 (997)
...|+...-+
T Consensus 156 f~nls~~~~g 165 (353)
T KOG2973|consen 156 FANLSQFEAG 165 (353)
T ss_pred HHHHhhhhhh
Confidence 9999876543
No 59
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=33.73 E-value=1.4e+02 Score=32.57 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCcccHHHHHHHHHHHHHHH
Q 001905 758 YFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLL 837 (997)
Q Consensus 758 y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~ 837 (997)
=|++.+...|+..+=..+-....+|.+++-+++.++=+.+.+ |-...||.++.++. ...++.+|.+.-
T Consensus 127 ~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~----~~~~~Lv~~~~dL~--------~~EL~~~I~~~f 194 (249)
T PF06685_consen 127 EYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPS----FLWGSLVADICDLY--------PEELLPEIRKAF 194 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHhcC--------HHHhHHHHHHHH
Confidence 358889999999887777778999999999999876655544 45667777766543 356788888877
Q ss_pred hcccccCCC
Q 001905 838 QFDRLMPSY 846 (997)
Q Consensus 838 ~~d~~~psy 846 (997)
..+-+-|++
T Consensus 195 ~~~lVd~~~ 203 (249)
T PF06685_consen 195 EDGLVDPSF 203 (249)
T ss_pred HcCCCCccc
Confidence 766555544
No 60
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=31.99 E-value=3.9e+02 Score=29.16 Aligned_cols=124 Identities=23% Similarity=0.338 Sum_probs=70.3
Q ss_pred hHHHHHHcccCChHHHHHHHHHHHcCCCCchh--------HHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHH
Q 001905 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFN--------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLL 729 (997)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~--------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~ 729 (997)
.+.+.-|+..+|..-|-.|.-++...+..+.. ....+...|.+ ..-.||..|..+|...+....+.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~--p~~~vr~~AL~aL~Nls~~~en~---- 88 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND--PNPSVREKALNALNNLSVNDENQ---- 88 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC--CChHHHHHHHHHHHhcCCChhhH----
Confidence 46677778888999999888888765322111 22345556655 47799999999999887653211
Q ss_pred HHHHHHHhcCCC-----C-CC-----------CCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhh
Q 001905 730 HLVKFYKSRRFD-----E-NI-----------GLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 791 (997)
Q Consensus 730 ~L~~~f~~~~~~-----~-~~-----------~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~ 791 (997)
..++.|-..-|. + ++ ++.-.|+. ++.+-+.||.-+..+...++++-..|...|++|=.
T Consensus 89 ~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 89 EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch----hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 122333322221 1 11 23333322 34455566666666655555545556666666554
No 61
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=31.66 E-value=75 Score=31.59 Aligned_cols=17 Identities=18% Similarity=-0.060 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHhhhcc
Q 001905 344 DTSIKLSFALARQWFGV 360 (997)
Q Consensus 344 ~~~~~iaHElAHQWFG~ 360 (997)
....+|.|||+|.|...
T Consensus 59 ~~~~tL~HEm~H~~~~~ 75 (157)
T PF10263_consen 59 ELIDTLLHEMAHAAAYV 75 (157)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34568999999999743
No 62
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=31.03 E-value=1.2e+02 Score=32.97 Aligned_cols=71 Identities=25% Similarity=0.179 Sum_probs=50.3
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHH
Q 001905 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (997)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f 735 (997)
-|+++--.|.......|+.-.|.+... ..++.+|...|.|+.--=-||-|||+||+....++. +..|.|+.
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~--~~Av~~l~~vl~desq~pmvRhEAaealga~~~~~~----~~~l~k~~ 109 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD--EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPES----LEILTKYI 109 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc--chhhHHHHHHhcccccchHHHHHHHHHHHhhcchhh----HHHHHHHh
Confidence 344554445555555567777776532 246789999999999999999999999998875443 56666665
No 63
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=29.80 E-value=3.5e+02 Score=30.06 Aligned_cols=95 Identities=22% Similarity=0.270 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhhccccc-------cC-------ChHHHHHHHHHHhccC-ccchhhhHHHHhhhccchhccCCCCCCCc
Q 001905 887 IWQVRVEASRALLDLEFH-------CN-------GIDSALSLFIKSVEEE-PSLRGQVKLGIHAMRICQIKGGSDSNHEV 951 (997)
Q Consensus 887 ~~~vr~~a~~~l~~~~~~-------~~-------~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (997)
...||+.|+++|+|+... .. +....++.+...+..+ |.++.. +...+.-+.+ ..++
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~---a~EGl~KLlL------~~~i 147 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAI---AVEGLCKLLL------SGRI 147 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHh------cCCC
Confidence 689999999999997531 11 1235777888888765 444432 1111111112 1245
Q ss_pred Cc-HHHHHHHHHH-hccccccchhhhhhHHHHHHHHhCCCc
Q 001905 952 DT-VTLVALLNLL-ESRIAFNNVFLRHHLFGILQILAGSPH 990 (997)
Q Consensus 952 ~~-~~~~~~~~~~-~~~~~~~~~~lr~~~~~~~~~l~g~~~ 990 (997)
.. +.++.+|-++ -+-.+..|.+||.-+-=++.+..-.++
T Consensus 148 ~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~ 188 (298)
T PF12719_consen 148 SDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSP 188 (298)
T ss_pred CcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCH
Confidence 55 6666665443 466677889999887777766655443
No 64
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.68 E-value=1.2e+03 Score=28.63 Aligned_cols=180 Identities=13% Similarity=0.110 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHH
Q 001905 706 RVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEF 785 (997)
Q Consensus 706 ~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~f 785 (997)
..|.-=-.||+.+.+..+ +..+.+.+++.- .+ .-.....+-.++..++. ..+++.+-
T Consensus 341 ~~r~~~~Dal~~~GT~~a----~~~i~~~i~~~~------------~~---~~ea~~~~~~~~~~~~~----Pt~~~l~~ 397 (574)
T smart00638 341 KARRIFLDAVAQAGTPPA----LKFIKQWIKNKK------------IT---PLEAAQLLAVLPHTARY----PTEEILKA 397 (574)
T ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHHHHcCC------------CC---HHHHHHHHHHHHHhhhc----CCHHHHHH
Confidence 334444455666665543 666666666422 11 11234555556666653 35678888
Q ss_pred HHHHhhhcCCCCCCCChHHHHHHHHHHhhcccc--Cccc--------HHHHHHHHHHHHHHHhcccccCCCCchhHHHHH
Q 001905 786 VLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF--GQQS--------ILFLSSLLKRIDRLLQFDRLMPSYNGILTISCI 855 (997)
Q Consensus 786 ll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~--~~~~--------~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l 855 (997)
|++|++.- +.-+..+-..+.+-|+|++.- +... ..++..+.+++.....- -. .-..+.+|
T Consensus 398 l~~l~~~~----~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~---~~~~~~~L 467 (574)
T smart00638 398 LFELAESP----EVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK---GD---EEEIQLYL 467 (574)
T ss_pred HHHHhcCc----cccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc---CC---chheeeHH
Confidence 88888732 233344566777788886521 1111 12333344444433310 11 11245688
Q ss_pred HHHHHHHHHhcCCCChhhhhhhhcccC--CCCChHHHHHHHHHHhhccccccCChHHHHHHHHHHh---ccCccchhh
Q 001905 856 RTLTQIALKLSGFISLDQVVKLIKPFR--DFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSV---EEEPSLRGQ 928 (997)
Q Consensus 856 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~ 928 (997)
++|.++ |+...-. .+.+|. +......+|++|+.+|-.+..... ..+-..++..+ ..++.+|..
T Consensus 468 kaLGN~-----g~~~~i~---~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--~~v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 468 KALGNA-----GHPSSIK---VLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--RKVQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred Hhhhcc-----CChhHHH---HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHcCCCCChHHHHH
Confidence 888775 4332211 122333 344568999999999987654333 23344444443 345777764
No 65
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=28.48 E-value=60 Score=29.99 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHhhhcccc
Q 001905 345 TSIKLSFALARQWFGVYI 362 (997)
Q Consensus 345 ~~~~iaHElAHQWFG~lV 362 (997)
.+-+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 345899999999998765
No 66
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=28.26 E-value=79 Score=33.25 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHhhhcccccC
Q 001905 345 TSIKLSFALARQWFGVYITP 364 (997)
Q Consensus 345 ~~~~iaHElAHQWFG~lVt~ 364 (997)
..-+|+||++|-.-++....
T Consensus 89 l~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 89 LAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp HHHHHHHHHHHHHTTHCCCC
T ss_pred HHHHHHHHHHHHHcCCcchH
Confidence 34589999999998877654
No 67
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=26.79 E-value=3.4 Score=30.28 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=14.3
Q ss_pred CCChHHHHHHHHHHHHHhhccccCCCC
Q 001905 752 FRDFSEYFVLEAIPHAVAMVRAADNKS 778 (997)
Q Consensus 752 F~d~~~y~v~~ai~~a~a~~r~~~g~~ 778 (997)
||+|... |||-....|+.+||.+|+|
T Consensus 2 ys~F~~W-LqCY~v~gM~sl~D~~gRT 27 (39)
T PF09292_consen 2 YSAFEAW-LQCYSVPGMKSLRDRNGRT 27 (39)
T ss_dssp HHHHHHH--SSTT-TT-EEEE-TTS-E
T ss_pred cHHHHHH-HHHhcccccccccccCCCE
Confidence 3444443 6666667789999999875
No 68
>PRK04351 hypothetical protein; Provisional
Probab=25.23 E-value=78 Score=31.58 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=14.8
Q ss_pred cccccccchh--hhhhHHHHHHHHHHh
Q 001905 332 ILYDEKVIDQ--AIDTSIKLSFALARQ 356 (997)
Q Consensus 332 lL~~~~~~d~--~~~~~~~iaHElAHQ 356 (997)
+=++|...+. ......+|+|||+|-
T Consensus 46 I~lnp~ll~~~~~~~l~~vv~HElcH~ 72 (149)
T PRK04351 46 IEFNPKMLEEYGLEELIGIIKHELCHY 72 (149)
T ss_pred EEeCHHHHhhccHHHHHhhHHHHHHHH
Confidence 4344544432 223356899999995
No 69
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=23.40 E-value=3.2e+02 Score=27.27 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 001905 275 VSKIHNTVEFFHNAFSHYETYLDAKFPFG 303 (997)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~e~~~g~~YP~~ 303 (997)
...+..+...+.++.+||.++|| .=++.
T Consensus 66 ~~~~vdA~~~~~~v~d~y~~~~g-r~siD 93 (150)
T PF01447_consen 66 DSAAVDAHYNAGKVYDYYKNVFG-RNSID 93 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHS-S-STT
T ss_pred ccHHHHHHHhHHHHHHHHHHHHC-CCCcC
Confidence 34556677788999999999999 55665
No 70
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=21.84 E-value=4.3e+02 Score=26.87 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCCchhHHhHHHhhhccCcc-hhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCC
Q 001905 673 QAQAIAALEALPHLSFNVVNTLNNFLSDSKA-FWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPND 751 (997)
Q Consensus 673 q~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~-f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~Nd 751 (997)
-.||...|.+.+..+ ...|| .|.+.++ --.||.-|...|.++..++. +.+|.+.-+...|++...-|.+-.
T Consensus 63 ~~e~~~lL~~W~~i~--~~~aL--eLL~~~f~~~~VR~yAV~~L~~~sd~eL----~~yL~QLVQaLKyE~~~~~~~~~~ 134 (166)
T cd00870 63 VKQALELMPKWAKID--IEDAL--ELLSPYFTNPVVRKYAVSRLKLASDEEL----LLYLLQLVQALKYENLDLSPLPRL 134 (166)
T ss_pred HHHHHHHHhcCCCCC--HHHHH--HHcCccCCCHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHHHhccccccccccc
Confidence 345666677765544 34454 2334322 35799999999999776653 344444444444554321222334
Q ss_pred CCChHHHHHHHHH
Q 001905 752 FRDFSEYFVLEAI 764 (997)
Q Consensus 752 F~d~~~y~v~~ai 764 (997)
-|...+|.|.+|+
T Consensus 135 ~s~La~fLl~Ral 147 (166)
T cd00870 135 DSPLADFLIERAL 147 (166)
T ss_pred ccHHHHHHHHHHh
Confidence 5778899998865
No 71
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.67 E-value=1e+02 Score=34.80 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 001905 347 IKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKA 401 (997)
Q Consensus 347 ~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~~~~ 401 (997)
.+++||+|||= |- ..|+=|+|++++...+. ++...||-.+..
T Consensus 198 ~T~~HElAHq~-G~-----------a~E~EANFiayLac~~s-~d~~frYSgy~~ 239 (318)
T PF12725_consen 198 FTICHELAHQL-GF-----------ASEDEANFIAYLACINS-PDPYFRYSGYLF 239 (318)
T ss_pred HHHHHHHHHHh-CC-----------CCHHHHHHHHHHHHhcC-CChheeHHHHHH
Confidence 37999999994 21 26888999988876543 333445544433
No 72
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.56 E-value=1e+03 Score=30.13 Aligned_cols=193 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHH
Q 001905 705 WRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVE 784 (997)
Q Consensus 705 ~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~ 784 (997)
+-|.+-=...|+..+++.+ ...+++-|+. -.++-||+ +--+-++||+++=...|..+.-+..
T Consensus 371 ~~vk~lKleiLs~La~esn----i~~ILrE~q~--------YI~s~d~~------faa~aV~AiGrCA~~~~sv~~tCL~ 432 (968)
T KOG1060|consen 371 TQVKILKLEILSNLANESN----ISEILRELQT--------YIKSSDRS------FAAAAVKAIGRCASRIGSVTDTCLN 432 (968)
T ss_pred HHHHHHHHHHHHHHhhhcc----HHHHHHHHHH--------HHhcCchh------HHHHHHHHHHHHHHhhCchhhHHHH
Q ss_pred HHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHH
Q 001905 785 FVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK 864 (997)
Q Consensus 785 fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~ 864 (997)
-|++||+ |. |...+++.+..+-.+...+..+ -.++|..+.|++ +++.--++-.++.=|---
T Consensus 433 gLv~Lls---sh-----de~Vv~eaV~vIk~Llq~~p~~--h~~ii~~La~ll---------dti~vp~ARA~IiWLige 493 (968)
T KOG1060|consen 433 GLVQLLS---SH-----DELVVAEAVVVIKRLLQKDPAE--HLEILFQLARLL---------DTILVPAARAGIIWLIGE 493 (968)
T ss_pred HHHHHHh---cc-----cchhHHHHHHHHHHHHhhChHH--HHHHHHHHHHHh---------hhhhhhhhhceeeeeehh
Q ss_pred hcCCCCh---hhhhhhhcccCCCCChHHHHHHHHHHhhcc-ccccCChHHHHHHHHHHhccCcc--chhhhHHHHhhh
Q 001905 865 LSGFISL---DQVVKLIKPFRDFNTIWQVRVEASRALLDL-EFHCNGIDSALSLFIKSVEEEPS--LRGQVKLGIHAM 936 (997)
Q Consensus 865 ~~~~~~~---~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~ 936 (997)
-+..+|. |-+..+.+.|++.+ ..|++..+..-+.| ....++.+-+.++.+...+.||+ +|.+.......+
T Consensus 494 ~~e~vpri~PDVLR~laksFs~E~--~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRaRF~r~l~ 569 (968)
T KOG1060|consen 494 YCEIVPRIAPDVLRKLAKSFSDEG--DEVKLQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRARFLRQLI 569 (968)
T ss_pred hhhhcchhchHHHHHHHHhhcccc--chhhHHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHHHHHHHHh
No 73
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.24 E-value=55 Score=39.82 Aligned_cols=44 Identities=30% Similarity=0.398 Sum_probs=0.0
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccc--HHHHHHHH
Q 001905 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAG--LLHLVKFY 735 (997)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g--~~~L~~~f 735 (997)
+|.|+.--|+|| ||-||.+|..+|.+.+...+.+.- +..|+.+|
T Consensus 374 ACGA~VhGlEDE--f~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMf 419 (823)
T KOG2259|consen 374 ACGALVHGLEDE--FYEVRRAAVASLCSLATSSPGFAVRALDFLVDMF 419 (823)
T ss_pred ccceeeeechHH--HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
No 74
>PRK03001 M48 family peptidase; Provisional
Probab=21.10 E-value=1.6e+02 Score=32.61 Aligned_cols=15 Identities=13% Similarity=-0.048 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHhhhc
Q 001905 345 TSIKLSFALARQWFG 359 (997)
Q Consensus 345 ~~~~iaHElAHQWFG 359 (997)
..-++|||++|-==+
T Consensus 124 l~aVlAHElgHi~~~ 138 (283)
T PRK03001 124 IRGVMAHELAHVKHR 138 (283)
T ss_pred HHHHHHHHHHHHhCC
Confidence 455899999997544
Done!