Query 001905
Match_columns 997
No_of_seqs 423 out of 1927
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 04:01:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b34_A Aminopeptidase N; prote 100.0 1.6E-73 5.4E-78 709.6 64.4 543 12-682 32-594 (891)
2 3ebh_A PFA-M1, M1 family amino 100.0 2E-73 6.7E-78 704.0 59.3 539 13-682 8-578 (889)
3 3se6_A Endoplasmic reticulum a 100.0 3.2E-71 1.1E-75 697.1 57.8 665 10-791 64-779 (967)
4 2xdt_A Endoplasmic reticulum a 100.0 1.7E-70 5.9E-75 690.9 53.8 547 10-674 4-592 (897)
5 2gtq_A Aminopeptidase N; alani 100.0 1.1E-69 3.9E-74 677.2 55.4 567 16-713 13-613 (867)
6 4fke_A Aminopeptidase N; zinc 100.0 1.6E-69 5.6E-74 683.6 52.2 550 9-671 5-589 (909)
7 1z5h_A Tricorn protease intera 100.0 1.6E-68 5.3E-73 664.0 48.0 545 19-720 1-557 (780)
8 3u9w_A Leukotriene A-4 hydrola 100.0 1.3E-68 4.5E-73 648.7 28.9 453 17-534 12-474 (608)
9 3cia_A Cold-active aminopeptid 100.0 7.8E-63 2.7E-67 597.8 37.2 433 10-519 15-464 (605)
10 2xq0_A LTA-4 hydrolase, leukot 100.0 6.1E-63 2.1E-67 600.5 33.8 435 10-518 17-466 (632)
11 4fgm_A Aminopeptidase N family 99.9 1.6E-22 5.3E-27 242.5 19.7 313 186-514 108-452 (597)
12 3ltm_A Alpha-REP4; protein eng 96.8 0.012 4.3E-07 60.0 14.2 183 657-903 21-203 (211)
13 1oyz_A Hypothetical protein YI 96.4 0.3 1E-05 52.0 22.0 214 657-927 25-239 (280)
14 3rjo_A Endoplasmic reticulum a 96.2 0.071 2.4E-06 61.1 16.7 55 798-856 192-249 (419)
15 3ltj_A Alpharep-4; protein eng 96.1 0.063 2.2E-06 54.2 13.7 182 657-901 15-196 (201)
16 1te4_A Conserved protein MTH18 95.0 0.022 7.6E-07 53.7 5.1 121 654-815 10-130 (131)
17 3ltj_A Alpharep-4; protein eng 94.8 0.24 8.3E-06 49.8 12.8 147 661-861 50-196 (201)
18 3ltm_A Alpha-REP4; protein eng 94.6 0.34 1.2E-05 49.0 13.3 149 660-862 54-202 (211)
19 2vgl_B AP-2 complex subunit be 94.4 1.3 4.4E-05 52.8 19.9 227 661-927 126-371 (591)
20 1oyz_A Hypothetical protein YI 94.0 0.19 6.6E-06 53.5 10.5 114 663-815 166-279 (280)
21 2vgl_B AP-2 complex subunit be 91.7 5.5 0.00019 47.3 19.7 201 666-904 96-312 (591)
22 1b3u_A Protein (protein phosph 91.4 2.2 7.4E-05 50.0 15.6 285 659-986 129-430 (588)
23 1w63_A Adapter-related protein 91.2 3.3 0.00011 49.6 17.1 246 658-928 144-404 (618)
24 1b3u_A Protein (protein phosph 89.4 3.4 0.00012 48.3 14.8 213 660-903 246-470 (588)
25 1te4_A Conserved protein MTH18 89.3 0.78 2.7E-05 42.8 7.4 85 661-771 47-131 (131)
26 4hxt_A De novo protein OR329; 87.9 4.1 0.00014 41.6 12.6 167 661-862 8-198 (252)
27 4b8j_A Importin subunit alpha- 87.8 4.3 0.00015 47.1 14.2 226 657-922 76-340 (528)
28 2jdq_A Importin alpha-1 subuni 87.6 5.2 0.00018 45.0 14.4 205 659-903 68-305 (450)
29 3ul1_B Importin subunit alpha- 87.2 15 0.00051 42.6 18.3 209 659-903 104-345 (510)
30 4b8j_A Importin subunit alpha- 85.4 5.2 0.00018 46.5 13.0 284 658-986 120-442 (528)
31 1wa5_B Importin alpha subunit; 85.3 2.1 7.1E-05 50.1 9.5 203 660-903 135-370 (530)
32 1w63_A Adapter-related protein 85.2 7.7 0.00026 46.4 14.6 226 666-928 323-567 (618)
33 1wa5_B Importin alpha subunit; 84.5 12 0.00043 43.3 15.8 224 657-921 89-352 (530)
34 4db8_A Armadillo-repeat protei 84.4 6.4 0.00022 40.4 11.9 174 655-862 11-208 (252)
35 1lsh_A Lipovitellin (LV-1N, LV 82.7 5.6 0.00019 50.9 12.5 108 802-927 453-563 (1056)
36 2vgl_A Adaptor protein complex 82.5 34 0.0012 40.8 18.7 238 667-927 122-387 (621)
37 3tpo_A Importin subunit alpha- 81.0 29 0.001 40.2 17.1 209 659-903 123-364 (529)
38 4db6_A Armadillo repeat protei 78.4 13 0.00043 36.9 11.2 133 655-818 11-167 (210)
39 1qgr_A Protein (importin beta 76.9 1.1E+02 0.0037 37.3 21.5 60 660-721 370-438 (876)
40 2vgl_A Adaptor protein complex 71.9 26 0.00088 41.8 13.3 228 665-929 338-580 (621)
41 2z6h_A Catenin beta-1, beta-ca 70.3 83 0.0028 37.3 17.5 208 658-903 59-292 (644)
42 1u6g_C TIP120 protein, CAND1; 69.1 21 0.00072 46.2 12.6 233 660-927 11-273 (1230)
43 4ady_A RPN2, 26S proteasome re 67.6 2.5E+02 0.0084 35.1 22.9 257 662-964 478-749 (963)
44 3opb_A SWI5-dependent HO expre 67.3 76 0.0026 38.6 15.8 260 690-967 458-759 (778)
45 4fdd_A Transportin-1; heat rep 67.0 63 0.0021 39.8 15.9 55 665-721 183-245 (852)
46 2bpt_A Importin beta-1 subunit 66.8 1.3E+02 0.0044 36.6 18.6 134 660-816 373-527 (861)
47 2qk2_A LP04448P; mini spindles 64.3 45 0.0015 33.9 11.8 58 660-720 20-86 (242)
48 2z6g_A B-catenin; FULL-length, 64.2 1.1E+02 0.0036 37.5 17.0 261 691-991 362-667 (780)
49 2z6g_A B-catenin; FULL-length, 63.7 1.1E+02 0.0039 37.2 17.1 238 660-927 403-690 (780)
50 1jdh_A Beta-catenin; beta-cate 63.1 1.8E+02 0.006 32.9 17.9 207 659-903 63-295 (529)
51 2z6h_A Catenin beta-1, beta-ca 62.8 1.2E+02 0.0042 35.7 16.9 107 690-818 225-336 (644)
52 4db8_A Armadillo-repeat protei 59.4 67 0.0023 32.4 12.0 129 661-817 59-208 (252)
53 2y3u_A Collagenase, collagenas 58.1 5.2 0.00018 48.7 3.4 36 347-382 424-468 (785)
54 1u4g_A Elastase, pseudolysin; 53.4 79 0.0027 33.8 11.3 103 277-390 72-180 (301)
55 2vqx_A Metalloproteinase; ther 52.9 82 0.0028 34.4 11.5 107 276-390 88-202 (341)
56 3tjz_B Coatomer subunit gamma; 52.9 86 0.003 34.4 12.0 60 842-906 258-319 (355)
57 4ady_A RPN2, 26S proteasome re 51.0 2.5E+02 0.0084 35.1 16.6 162 707-901 374-535 (963)
58 3grl_A General vesicular trans 48.8 14 0.00048 43.8 5.0 205 646-901 111-340 (651)
59 1bqb_A Protein (aureolysin); h 45.8 1E+02 0.0035 32.9 10.7 97 278-383 67-177 (301)
60 3now_A UNC-45 protein, SD10334 45.7 50 0.0017 40.6 9.4 171 691-903 497-694 (810)
61 3cqb_A Probable protease HTPX 45.2 26 0.00089 31.4 5.2 16 345-360 83-98 (107)
62 3ul1_B Importin subunit alpha- 44.0 48 0.0016 38.2 8.7 53 666-720 326-387 (510)
63 3dnz_A Thermolysin; hydrolase, 43.6 1.1E+02 0.0037 33.0 10.5 102 276-385 68-177 (316)
64 4db6_A Armadillo repeat protei 43.0 64 0.0022 31.5 8.4 59 660-720 58-125 (210)
65 1qgr_A Protein (importin beta 42.4 3.1E+02 0.01 33.2 16.2 58 661-719 7-65 (876)
66 4ger_A Gentlyase metalloprotea 41.5 1.3E+02 0.0045 32.2 10.6 101 277-385 62-170 (304)
67 4hxt_A De novo protein OR329; 41.0 1.4E+02 0.0047 29.7 10.8 56 663-720 135-199 (252)
68 1u6g_C TIP120 protein, CAND1; 40.1 1.3E+02 0.0044 38.7 12.6 207 660-902 53-283 (1230)
69 3l9t_A Putative uncharacterize 39.5 44 0.0015 34.5 6.3 58 660-720 75-133 (240)
70 3tpo_A Importin subunit alpha- 39.1 57 0.002 37.7 8.3 57 662-720 341-406 (529)
71 4fdd_A Transportin-1; heat rep 38.9 6E+02 0.02 30.7 21.3 54 666-720 23-77 (852)
72 1jdh_A Beta-catenin; beta-cate 38.0 4.2E+02 0.014 29.6 15.5 70 666-737 111-196 (529)
73 2of3_A ZYG-9; multifunctional 37.0 1.5E+02 0.0052 31.0 10.3 52 851-905 184-238 (266)
74 3tjz_B Coatomer subunit gamma; 33.5 5E+02 0.017 28.2 14.8 216 664-927 76-305 (355)
75 1ibr_B P95, importin beta-1 su 32.4 5.2E+02 0.018 28.0 19.2 296 666-986 11-356 (462)
76 2jdq_A Importin alpha-1 subuni 31.6 1.3E+02 0.0046 33.0 9.6 15 705-719 332-346 (450)
77 2qk2_A LP04448P; mini spindles 30.8 1.2E+02 0.004 30.6 8.3 60 659-720 60-127 (242)
78 3c37_A Peptidase, M48 family; 27.2 45 0.0015 34.8 4.2 54 304-361 63-116 (253)
79 2bpt_A Importin beta-1 subunit 25.4 2E+02 0.0069 34.8 10.4 210 690-920 598-835 (861)
80 3nqx_A MCP-02, secreted metall 23.6 4E+02 0.014 28.4 10.7 103 277-390 73-181 (306)
No 1
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=100.00 E-value=1.6e-73 Score=709.62 Aligned_cols=543 Identities=15% Similarity=0.172 Sum_probs=413.7
Q ss_pred CCCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEecCCceeEEEEEcCeee-eeeeCCCCcccchhhhhh
Q 001905 12 TKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPT-EFEYYPHNHQNVENEKRW 90 (997)
Q Consensus 12 p~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~l~I~~V~v~g~~~-~f~~~~~~~~~~~~~~~~ 90 (997)
+...++++.+.||+|++++++++.+++|.++|++...+++.|.||+++|+|.+|++||.++ .|+..+.
T Consensus 32 ~~y~~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~l~Ld~~~L~I~sV~v~G~~l~~y~~~~~----------- 100 (891)
T 3b34_A 32 HDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEG----------- 100 (891)
T ss_dssp GGCCCCSEEEEEEEEEEECCSSCEEEEEEEEEEECSCTTCCEEEECSSCEEEEEEETTEECCSEEEETT-----------
T ss_pred hhCCCCCceeEEEEEEEEEECCceEEEEEEEEEEccCCCCEEEEECCCCEEEEEEEcCEEcceEEeeCC-----------
Confidence 4456789999999999999999999999999987644567899999999999999999987 5554321
Q ss_pred ccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCceEEEEEEEEe----cC
Q 001905 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVE----KV 166 (997)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~i~y~~~----~~ 166 (997)
.|.|. + ++. ...+.|.|... ..
T Consensus 101 ----------------------------~L~I~---~---lp~--------------------~~~l~I~y~~~p~~~~~ 126 (891)
T 3b34_A 101 ----------------------------ALVIS---N---LPE--------------------RFTLKIINEISPAANTA 126 (891)
T ss_dssp ----------------------------EEEEC---S---CCS--------------------EEEEEEEEEECGGGCCS
T ss_pred ----------------------------EEEEE---e---CCC--------------------eEEEEEEEEEeecccCC
Confidence 35553 0 110 11233444332 11
Q ss_pred CceeeeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCC-e-EEEEcCceeeeeeccCCCCceEEEEeccCCCc
Q 001905 167 EVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVS 244 (997)
Q Consensus 167 ~~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~-~-~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s 244 (997)
..|+++.+.+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++++.. .++++++++|+.++|||
T Consensus 127 l~Gly~s~~~~~Tq~Ep~~AR~~fPc~DeP~~kAtf~itI~~p~~~y~~alSNg~l~~~~~--~~~g~~~~~f~~t~pms 204 (891)
T 3b34_A 127 LEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGE--LENGRHWVQWQDPFPKP 204 (891)
T ss_dssp CCEEEEETTEEEEECTTTTGGGTSSBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--CSTTEEEEEEEEEEEEC
T ss_pred CceEEEeCCEEEeccccCCCCccccCCCCcccceEEEEEEEeccccceEEEeCCcccccee--ecCCeEEEEEEeCCCcc
Confidence 246666666889999999999999999999999999999999997 6 8999999987653 35678999999999999
Q ss_pred ceeeEEEEeccceeecC----CC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCcccc
Q 001905 245 AKWITLAVAPFEVLPDH----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSS 318 (997)
Q Consensus 245 ~yliafaVG~F~~~~~~----~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~ 318 (997)
+|++||+||+|+.+++. .+ .++++|++|+..+.++++++.++++++|||++||+||||++|++|++|+...++|
T Consensus 205 tYL~A~~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~diVavPdf~~GaM 284 (891)
T 3b34_A 205 CYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAM 284 (891)
T ss_dssp GGGCCEEEECCEEEEEEEECTTCCEEEEEEEECTTCGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSEE
T ss_pred ceeeEEEeccceEEeeeeeccCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCcCcc
Confidence 99999999999998752 22 4699999999999999999999999999999999999999999999997556678
Q ss_pred cccccchhhcc-cccccccccc-hhhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHH
Q 001905 319 STFGAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEAR 395 (997)
Q Consensus 319 ~~~gagL~i~~-~~lL~~~~~~-d~~~-~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r 395 (997)
+++ |+++|+ ..+|+++... +... ....+||||+|||||||+|||+||+|+|||||||+|++.+|+++..|....+
T Consensus 285 En~--GLitf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~~ 362 (891)
T 3b34_A 285 ENK--GLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNR 362 (891)
T ss_dssp CCT--TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred ccC--ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHHhCHHHHH
Confidence 877 678885 5677876543 2222 3346899999999999999999999999999999999999999887755443
Q ss_pred HHHHHHhhhhhhhccCCCccCCCCCccccCCC---CccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCC
Q 001905 396 YRRYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGA 472 (997)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~---~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~ 472 (997)
+.............+.+ +..+++.. .++...|+.++|.||++|||||+..||++.|+++|+.|+++++++
T Consensus 363 ~~~~~~l~~~~~~~D~~-------~~~~Pi~~~~~~~i~~~f~~i~Y~KGa~VLrML~~~lG~e~F~~gLr~Yl~~~~~~ 435 (891)
T 3b34_A 363 INNVRTMRGLQFAEDAS-------PMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGS 435 (891)
T ss_dssp HHHHHHHHHTHHHHHTS-------TTCCCSSCSEESCGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHhhhhhhcc-------ccCCCCccccccccccccccchhhHHHHHHHHHHHHHCHHHHHHHHHHHHHhccCC
Confidence 32221111100111111 11122211 234567889999999999999999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcccHHHHHHHhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCC
Q 001905 473 SPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDS 552 (997)
Q Consensus 473 ~~~~~~st~~F~~~~e~v~~~~~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~ 552 (997)
+ +++++|++.+++++ |.|+.+ |++|++++|+|.++|+.+|+.+++.++++++|......
T Consensus 436 ~----att~Df~~ale~~s---g~dL~~-f~~W~~q~G~P~l~V~~~~~~~~~~~~ltl~Q~~~~~~------------- 494 (891)
T 3b34_A 436 A----ATCDDFVQAMEDAS---NVDLSH-FRRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATP------------- 494 (891)
T ss_dssp E----ECHHHHHHHHHHHH---CCCCTT-TTHHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCBT-------------
T ss_pred C----CCHHHHHHHHHHHh---CCCHHH-HHHHHcCCCCceEEEEEEeecCCCEEEEEEEEecCCCC-------------
Confidence 5 79999999999988 467888 57999999999999999998777777777777542110
Q ss_pred CCCCCCCCcceeeEEEEeccCCcccccccccCCCc-eEEEEeecccchhhhhhcCCCCCCCCCCCCCCCCcccccccccc
Q 001905 553 ENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSS 631 (997)
Q Consensus 553 ~~~~~~~~~~gp~tiri~e~dGt~~h~~~~~~~~~-~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~ 631 (997)
..+....|++|+++.+.+.||... ++. +.+.. ..++.+. +.+...+ +...
T Consensus 495 -~~~~~~~~~iPi~v~l~~~~G~~~-~~~-~~~~~~~~~~~l~--------------------~~~~~~~-~~~v----- 545 (891)
T 3b34_A 495 -DQAEKQPLHIPFAIELYDNEGKVI-PLQ-KGGHPVNSVLNVT--------------------QAEQTFV-FDNV----- 545 (891)
T ss_dssp -TBSCCCCCCEEEEEEEECTTSCBC-CCE-ETTEECCSEEEEC--------------------SSEEEEE-ECCC-----
T ss_pred -CCCCCceEEEEEEEEEEcCCCCcc-ccc-ccccccceEEEec--------------------CCcEEEE-EccC-----
Confidence 001234799999999998888631 110 11110 0011110 0000000 1001
Q ss_pred CCCCceEEEecCCCceeeEecccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001905 632 MESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (997)
Q Consensus 632 ~~~~~~wir~Dpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (997)
.+.| ||++|+++....+|++++++++|+.||++|+|+.+|.||++.|.+
T Consensus 546 ~~~P--~~~l~~~~s~~~~v~~~~~~~~l~~~l~~d~d~~~R~~a~~~L~~ 594 (891)
T 3b34_A 546 YFQP--VPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLA 594 (891)
T ss_dssp CSCC--EEEESTTCCSSCEEECCCCHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCCC--cEEEcCCCcceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 1223 799999999999999999999999999999999999999999975
No 2
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=100.00 E-value=2e-73 Score=704.04 Aligned_cols=539 Identities=12% Similarity=0.121 Sum_probs=418.4
Q ss_pred CCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEcC-CcceEEEecCCceeEEEEEcCeeee----eeeCCCCcccchhh
Q 001905 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTE----FEYYPHNHQNVENE 87 (997)
Q Consensus 13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~~~~I~L~a~~l~I~~V~v~g~~~~----f~~~~~~~~~~~~~ 87 (997)
...++++.+.||+|++++|+++++++|.++|++.+. +++.|.||+++|+|.+|++||+++. |.+.+
T Consensus 8 dy~~~~~~V~h~~L~l~ld~~~~~v~G~~~i~~~~~~~~~~l~LD~~~L~I~sV~vnG~~l~~~~~~~~~~--------- 78 (889)
T 3ebh_A 8 DYKPSGFIINQVTLNINIHDQETIVRSVLDMDISKHNVGEDLVFDGVGLKINEISINNKKLVEGEEYTYDN--------- 78 (889)
T ss_dssp GCCCCSEEEEEEEEEEEECSSCEEEEEEEEEEECTTCCSCCEEEECCSCEEEEEEETTEECCBTTTEEECS---------
T ss_pred CCCCCCcEEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCceEEEECCCCEEEEEEECCEEcCcccceEecC---------
Confidence 456789999999999999999999999999998653 4789999999999999999998753 43322
Q ss_pred hhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCceEEEEEEEEec--
Q 001905 88 KRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK-- 165 (997)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~i~y~~~~-- 165 (997)
..|.|.++. ++. ....+.|.|....
T Consensus 79 ------------------------------~~L~I~l~~----l~~-------------------~~~~l~I~y~~~p~~ 105 (889)
T 3ebh_A 79 ------------------------------EFLTIFSKF----VPK-------------------SKFAFSSEVIIHPET 105 (889)
T ss_dssp ------------------------------SEEEECGGG----SCS-------------------SSEEEEEEEEECGGG
T ss_pred ------------------------------CEEEEecCC----CCC-------------------CcEEEEEEEEecCcc
Confidence 136664321 110 0123444444321
Q ss_pred --CCceeeeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCC-e-EEEEcCceeeeeeccCCCCceEEEEeccC
Q 001905 166 --VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDV 241 (997)
Q Consensus 166 --~~~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~-~-~avsnG~l~~~~~~~~~~~~kt~~F~~t~ 241 (997)
.-.|+++.+.+++|||||.+||+||||+|+|+.||||+++|++|++ | +++|||+++++.. .++++++++|+.++
T Consensus 106 ~~~l~Gly~s~~~~~TQ~Ep~~AR~~fPC~DeP~~KAtf~itIt~p~~~~~valSNg~l~~~~~--~~~g~~~~~f~~t~ 183 (889)
T 3ebh_A 106 NYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFE--IPGGRHGARFNDPP 183 (889)
T ss_dssp CTTCSEEEEETTEEEEECTTTTGGGTSCBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--ETTTEEEEEEEEEE
T ss_pred CCCceeeEEECCeEEEcccCCCCCEEEEEcCCCCcceEEEEEEEEccccCeEEEccCcccccee--cCCCeEEEEEecCC
Confidence 1236666667899999999999999999999999999999999997 8 5799999987653 24678999999999
Q ss_pred CCcceeeEEEEeccceeecC-----CC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCC
Q 001905 242 PVSAKWITLAVAPFEVLPDH-----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEM 314 (997)
Q Consensus 242 p~s~yliafaVG~F~~~~~~-----~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~ 314 (997)
|||+|++||+||+|+++++. .+ .++++|++|+..+.++++++.++++++|||++||+||||+||++|++|+..
T Consensus 184 pmstYLvA~~vG~f~~~~~~~~t~~~G~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~kyd~VavPdF~ 263 (889)
T 3ebh_A 184 LKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFN 263 (889)
T ss_dssp EECGGGCCEEEECEEEEEEEEECSSSCCEEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCS
T ss_pred ccchhheeeEEecceEEeeeeeecCCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCCCceEEEEecccc
Confidence 99999999999999988753 23 468999999999999999999999999999999999999999999999655
Q ss_pred cccccccccchhhcc-cccccccccc-hhhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 001905 315 AVSSSTFGAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGN 391 (997)
Q Consensus 315 ~~~~~~~gagL~i~~-~~lL~~~~~~-d~~~-~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~ 391 (997)
.++|+++ ||++|. ..+|+++... +... ....+||||+|||||||+|||+||+|+|||||||+|++.+|.++..|.
T Consensus 264 ~GaMEN~--GLvtf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHQWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~ 341 (889)
T 3ebh_A 264 VGAMENK--GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKT 341 (889)
T ss_dssp SSEECCT--TEEEEEGGGTCCCTTTSCTHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHHCC
T ss_pred chhhcCC--ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhcCeeeecccccceeeHHHHHHHHHHHHHHhcCH
Confidence 6788887 678884 5677777643 3222 234689999999999999999999999999999999999999999888
Q ss_pred cHHHHHHHHHhhhhhhhccCCCccCCCCCccccCCC---CccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHh
Q 001905 392 NEARYRRYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISR 468 (997)
Q Consensus 392 ~e~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~---~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~ 468 (997)
...++.............+.+ +..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+++
T Consensus 342 ~~~r~~~~~~lr~~~~~~D~~-------~~shPI~~~~~~ei~~~f~~i~Y~KGa~vLrML~~~lGde~F~~gLr~Yl~~ 414 (889)
T 3ebh_A 342 VTTRLSHVDLLRSVQFLEDSS-------PLSHPIRPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKK 414 (889)
T ss_dssp THHHHHHHHHHHHHHHHHHTS-------TTCCCSSCSEESCGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccC-------ccCCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 765543322111100111111 11222321 23456789999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHhcC----CCcccHHHHHHHhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCC
Q 001905 469 AQGASPVRTLSTKEFRHFANKVGN----LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTP 544 (997)
Q Consensus 469 ~~~~~~~~~~st~~F~~~~e~v~~----~~~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~ 544 (997)
+++++ ++++||++.+++++. ..|.||.. |++|++++|+|.++|+.+|+.+++.++++|+|.......
T Consensus 415 ~~~~n----att~Df~~ale~as~~~~~~~g~dL~~-f~~Wl~q~G~P~l~V~~~~d~~~~~~~ltl~Q~~~~~~~---- 485 (889)
T 3ebh_A 415 NDGNT----ATCEDFNYAMEQAYKMKKADNSANLNQ-YLLWFSQSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDEN---- 485 (889)
T ss_dssp HTTSE----ECHHHHHHHHHHHHHHHHTCTTCCCTG-GGHHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCCSS----
T ss_pred cCCCC----CCHHHHHHHHHHHhhhccCCCCCCHHH-HHHHhcCCCCceEEEEEeecCCCCEEEEEEEEecCCCCC----
Confidence 99985 799999999988761 01457886 689999999999999999998778888888887532110
Q ss_pred cccCCCCCCCCCCCCCcceeeEEEEecc-CCc-c--cccccccCCCceEEEEeecccchhhhhhcCCCCCCCCCCCCCCC
Q 001905 545 VLSSNTDSENRDGDIGWPGMMSIRVHEL-DGM-Y--DHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNG 620 (997)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~gp~tiri~e~-dGt-~--~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~ 620 (997)
......|..|++|.+... +|. . .+. +.+ .+..+.|.++.
T Consensus 486 ----------~~~~~~~~IPl~v~l~~~~~G~~~~~~~~-l~l-~~~~q~f~~~~------------------------- 528 (889)
T 3ebh_A 486 ----------QKEKKPLFIPISVGLINPENGKEMISQTT-LEL-TKESDTFVFNN------------------------- 528 (889)
T ss_dssp ----------CSSCCCCCEEEEEEEECTTTCCBCSCCEE-EEE-CSSEEEEEESC-------------------------
T ss_pred ----------CCCCceEEEEEEEEEEeCCCCccccceeE-EEe-cCCcEEEEEcC-------------------------
Confidence 012347999999999887 786 2 222 222 22223333320
Q ss_pred CccccccccccCCCCceEEEecCCCceeeEecccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001905 621 DAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (997)
Q Consensus 621 d~~~~~d~~~~~~~~~~wir~Dpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (997)
+ .+++ |+.++++|.-..+++.+.++.++..||++|.|..+|.||++.|..
T Consensus 529 --~---------~~~p-~~sl~r~fsa~v~l~~~~~~~~l~~l~~~d~d~~~r~~a~~~l~~ 578 (889)
T 3ebh_A 529 --I---------AVKP-IPSLFRGFSAPVYIEDQLTDEERILLLKYDSDAFVRYNSCTNIYM 578 (889)
T ss_dssp --C---------CSCC-EEEESTTCCSSSEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred --C---------CCCC-eEEEcCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 0 1122 447999999999999999999999999999999999999999874
No 3
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=100.00 E-value=3.2e-71 Score=697.08 Aligned_cols=665 Identities=16% Similarity=0.188 Sum_probs=458.5
Q ss_pred CCCCCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEecCCceeEEEEEcCeeeeeeeCCCCcccchhhh
Q 001905 10 EETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEK 88 (997)
Q Consensus 10 ~~p~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~ 88 (997)
.+.++++..++|.||+|.|++|+++.+|+|.|+|++.+ .+++.|.||+++|+|++|.+++....-..... ..+ ..
T Consensus 64 ~~~~RLP~~v~P~hY~L~L~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~I~~v~v~~~~~~~~~~~~--~~~--~~ 139 (967)
T 3se6_A 64 WQELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPG--KEL--KV 139 (967)
T ss_dssp CCCSSCCTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCCSEEEEECSSCEEEEEEEEECC---CCSSC--EEC--EE
T ss_pred cccccCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEEEcCCCEEEEECCCCEEEEEEEeccCCccccccc--cee--ee
Confidence 33567889999999999999999999999999999987 56899999999999999998632210000000 000 00
Q ss_pred hhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCC-ceEEEEEEEEecCC
Q 001905 89 RWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKVE 167 (997)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~i~i~y~~~~~~ 167 (997)
........+.|.++.+ ++.|. .++ +.+.|+|.+... .|+++..|...
T Consensus 140 -----------------------~~~~~~~~l~i~l~~~---L~~g~-~~~--l~i~y~g~~~~~~~G~y~s~y~~~--- 187 (967)
T 3se6_A 140 -----------------------LSYPAHEQIALLVPEK---LTPHL-KYY--VAMDFQAKLGDGFEGFYKSTYRTL--- 187 (967)
T ss_dssp -----------------------EEEGGGTEEEEECSSC---CCTTC-CEE--EEEEEEEECBSSSSEEEEEEEECT---
T ss_pred -----------------------EEecCCCEEEEEcCCc---cCCCC-eEE--EEEEEEEecCCCccceeeeeeEcC---
Confidence 0000012466654332 22222 123 346678877643 58999888642
Q ss_pred ceeeeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEeccCCCccee
Q 001905 168 VGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKW 247 (997)
Q Consensus 168 ~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yl 247 (997)
+|- ..++++||+||.+||+||||+|+|+.||||+|+|++|++|+|+|||++.++.. .++++++++|+.++|||+|+
T Consensus 188 ~g~--~~~~~~Tq~ep~~AR~~FPC~DeP~~KAtf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~~F~~t~pmstYL 263 (967)
T 3se6_A 188 GGE--TRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIE--LEGGLLEDHFETTVKMSTYL 263 (967)
T ss_dssp TSC--EEEEEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEECTTCEEEESSCEEEEEE--CTTSCEEEEECCCCSBCGGG
T ss_pred CCc--eEEEEEEecccCCCCeEEEecCCcCceeEEEEEEEECCCcEEEeCCCccccee--cCCCeEEEEEecCCCcccee
Confidence 332 25678999999999999999999999999999999999999999999976543 45688999999999999999
Q ss_pred eEEEEeccceeecC--CCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCcccccccccch
Q 001905 248 ITLAVAPFEVLPDH--HQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAM 325 (997)
Q Consensus 248 iafaVG~F~~~~~~--~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagL 325 (997)
+||+||+|+.++.. .+.++++|++|+..+.++++++.+.++++|||++||+||||+||++|++|+...++|+++ ||
T Consensus 264 va~~vg~f~~~~~~~~~gv~v~v~~~p~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vPdf~~GaMEn~--Gl 341 (967)
T 3se6_A 264 VAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENW--GL 341 (967)
T ss_dssp CCEEEECCEEEEEECTTCCEEEEEECGGGGGGGHHHHHHHHHHHHHHHHHHTCCCCSSEEEEEEESSCSSSEECCT--TE
T ss_pred EEEEEeceEEEEeecCCCcEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccEEEecCCCCcccccC--Cc
Confidence 99999999998753 467899999999999999999999999999999999999999999999997556788887 67
Q ss_pred hhcc-cccccccccchhh--hhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 001905 326 GIFS-SQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKAN 402 (997)
Q Consensus 326 ~i~~-~~lL~~~~~~d~~--~~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~~~~~ 402 (997)
+++. +.+|++++..... .....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|.....-......
T Consensus 342 ity~e~~ll~d~~~s~~~~k~~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~p~~~~~~~~~~~~ 421 (967)
T 3se6_A 342 ITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVC 421 (967)
T ss_dssp EEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred cccchhheecCcccCCHHhhHhHHHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 8884 5688888754322 233468999999999999999999999999999999999999999988754310001111
Q ss_pred hhhhhhcc-CCCccCCCCCccccCC-CCccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCCCCCCCCCH
Q 001905 403 CAVCKADD-SGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLST 480 (997)
Q Consensus 403 ~~~~~~~~-~~~~~l~~~~~~~~l~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st 480 (997)
...+..|. ....|+ ..++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ +++
T Consensus 422 ~~al~~D~~~~~~Pi-----~~~v~~~~~i~~~Fd~i~Y~KGa~vL~mL~~~lG~e~F~~gLr~Yl~~~~~~n----at~ 492 (967)
T 3se6_A 422 FEVITKDSLNSSRPI-----SKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRN----AKN 492 (967)
T ss_dssp HHHHTTTTSTTCCCS-----SCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEE----ECH
T ss_pred HHHHHhhcccCCCCc-----eeecCCHHHHHHhcchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCC----CCH
Confidence 11111111 011111 11221 12345689999999999999999999999999999999999999996 699
Q ss_pred HHHHHHHHHhcC------------------------CCcccHHHHHHHhhcCCCccEEEEEEEEeccCcEEEEEEEeecc
Q 001905 481 KEFRHFANKVGN------------------------LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536 (997)
Q Consensus 481 ~~F~~~~e~v~~------------------------~~~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~ 536 (997)
+||++.++++.. .++.++++||++|++++|+|+++|+.+ ++.+.++|+|+..
T Consensus 493 ~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv~~~m~~W~~q~G~Pvl~V~~~----~~~~~l~Q~rf~~ 568 (967)
T 3se6_A 493 DDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQD----GCSLRLQQERFLQ 568 (967)
T ss_dssp HHHHHHHHCC-------------------------CCCCCCHHHHHHHHHHSCSCEEEEEEEE----TTEEEEEEEECCC
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccCCcCHHHHHHHHhcCCCCcEEEEEec----CCEEEEEeeeecC
Confidence 999999887521 146799999999999999999999873 4578899998764
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCcceeeEEEEeccCCcccccccccCCCceEEEEeecccchhhhhhcCCCCCCCCCCC
Q 001905 537 VKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGC 616 (997)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~ 616 (997)
...... ++....+....|++|+++.... +++....+ +. .....++
T Consensus 569 ~~~~~~-------~~~~~~~~~~~W~IPl~~~~~~-~~~~~~~~--l~-~~~~~i~------------------------ 613 (967)
T 3se6_A 569 GVFQED-------PEWRALQERYLWHIPLTYSTSS-SNVIHRHI--LK-SKTDTLD------------------------ 613 (967)
T ss_dssp C------------------CCSCCCCCCEEEEESS-CCCCEEEC--CC-SSEEEEE------------------------
T ss_pred CCCCCc-------cccccccCCceEEEEEEEEeCC-CCccceEE--ec-CCceEEe------------------------
Confidence 221000 0000001235799999986542 22211111 10 0000000
Q ss_pred CCCCCccccccccccCCCCceEEEecCCCceeeEecccCc-hhHHHHHHcccC---ChHHHHHHH---HHHHcCCCCchh
Q 001905 617 DDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDG---DVVAQAQAI---AALEALPHLSFN 689 (997)
Q Consensus 617 ~~~~d~~~~~d~~~~~~~~~~wir~Dpd~e~l~~v~~~qp-~~m~~~QL~~dr---dv~aq~eAi---~~l~~~~~~s~~ 689 (997)
+ .++.+||.++++..=..+|+++.. +...+.||+.+. ++..|..-| -+|......+..
T Consensus 614 ------~---------~~~~~wi~~N~~~~GyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~~ 678 (967)
T 3se6_A 614 ------L---------PEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLD 678 (967)
T ss_dssp ------C---------SSCCSCEEESGGGCSSCEEEEETTHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred ------c---------cCCCceEEEeCCccEEEEEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 0 123479999999999999999976 667778887644 555555333 344443334443
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhcccc-----cc-cccHH-HH----HHHHHhcCCCCCCCCCCCCCCCChHHH
Q 001905 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-----TD-WAGLL-HL----VKFYKSRRFDENIGLPRPNDFRDFSEY 758 (997)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~-----~~-~~g~~-~L----~~~f~~~~~~~~~~~p~~NdF~d~~~y 758 (997)
..--|.+.|.+|. -|-+=..|...|..+..-. .. ...+. .+ ...|.+.-.. ++ .+...-
T Consensus 679 ~~l~l~~~l~~E~-~~~~w~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~-------~~--~~~~~~ 748 (967)
T 3se6_A 679 KALDMTYYLQHET-SSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVIDRQSWS-------DK--GSVWDR 748 (967)
T ss_dssp HHHHHTTGGGTCC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTHHHHHHCCSS-------CC--SCHHHH
T ss_pred HHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHcCCC-------CC--CcHHHH
Confidence 3444567888876 4556677777776543211 00 11111 11 1233332222 12 234444
Q ss_pred HHHHHHHHHHhhccccCCCChHHHHHHHHHHhh
Q 001905 759 FVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 791 (997)
Q Consensus 759 ~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~ 791 (997)
.++..+....+.. .+..|-.++.+.+-+.+.
T Consensus 749 ~lR~~il~~ac~~--g~~~c~~~A~~~f~~~~~ 779 (967)
T 3se6_A 749 MLRSALLKLACDL--NHAPCIQKAAELFSQWME 779 (967)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHhhc
Confidence 5565555554444 345577777776666654
No 4
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=100.00 E-value=1.7e-70 Score=690.92 Aligned_cols=547 Identities=14% Similarity=0.217 Sum_probs=403.8
Q ss_pred CCCCCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEecCCceeEEEEEcCe---eeeeeeCCCCcccch
Q 001905 10 EETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE---PTEFEYYPHNHQNVE 85 (997)
Q Consensus 10 ~~p~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~---~~~f~~~~~~~~~~~ 85 (997)
.+.++++..+.|.||+|+|++|+++.+|.|.++|++.+ .+++.|.||+++|+|.+|+++|. ++.+..... .
T Consensus 4 ~~~~rLp~~~~p~hY~l~L~~d~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~v~~~~~~~~~~~~~~~--~--- 78 (897)
T 2xdt_A 4 WNKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQV--L--- 78 (897)
T ss_dssp CCCSSCCSSEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCEEEEEEECSSCEEEEEEEEEC----CEEEECEE--E---
T ss_pred cccCcCCCCcEeeEEEEEEEEecCCCeEEEEEEEEEEEEcCCCEEEEEeCCCEEEEEEEEecCCccccccccee--E---
Confidence 44577889999999999999999999999999999986 46789999999999999999642 221111000 0
Q ss_pred hhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCC-CceEEEEEEEEe
Q 001905 86 NEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVE 164 (997)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~i~i~y~~~ 164 (997)
.......|.|.++.+ ++.|. .++ +.+.|.|.+.. ..|+++..|...
T Consensus 79 ---------------------------~~~~~~~l~i~l~~~---L~~g~-~~~--L~i~y~g~~~~~~~G~y~s~y~~~ 125 (897)
T 2xdt_A 79 ---------------------------EHPRQEQIALLAPEP---LLVGL-PYT--VVIHYAGNLSETFHGFYKSTYRTK 125 (897)
T ss_dssp ---------------------------EETTTTEEEEEEEEE---ECTTC-CEE--EEEEEEEECBSSSSEEEEEEEECT
T ss_pred ---------------------------EcCCCcEEEEEeCCc---cCCCC-EEE--EEEEEEEEeCCCCceeEeeeeecC
Confidence 000112366655322 21121 122 34567777654 358888888632
Q ss_pred cCCceeeeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEeccCCCc
Q 001905 165 KVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVS 244 (997)
Q Consensus 165 ~~~~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s 244 (997)
+|- .+++++||+||.+||+||||+|+|+.||+|+|+|++|++|+|+|||+++++.. .++++++++|+.++|||
T Consensus 126 ---~g~--~~~~~~Tq~ep~~AR~~fPc~DeP~~Katf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~~f~~t~pms 198 (897)
T 2xdt_A 126 ---EGE--LRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVT--VAEGLIEDHFDVTVKMS 198 (897)
T ss_dssp ---TSC--EEEEEEEECTTTTHHHHSCBCCSTTSCBEEEEEEEECTTCEEEESSCEEEEEE--EETTEEEEEECCCCSBC
T ss_pred ---CCc--eeEEEEecceecccceEEeccCCccccCeEEEEEEEcCCceEecCCCccceEe--cCCCEEEEEEeCCCccc
Confidence 342 14678999999999999999999999999999999999999999999987543 24578999999999999
Q ss_pred ceeeEEEEeccceeec--CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCcccccccc
Q 001905 245 AKWITLAVAPFEVLPD--HHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFG 322 (997)
Q Consensus 245 ~yliafaVG~F~~~~~--~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~g 322 (997)
+|++||+||+|+.++. ..+.++++|++|+..+.++++++.++++++|||++||+||||+||++|++|+...++|+++
T Consensus 199 tYL~a~~vg~f~~~~~~~~~gv~v~v~~~~~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~- 277 (897)
T 2xdt_A 199 TYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENW- 277 (897)
T ss_dssp GGGCCEEEECCEEEEEECTTCCEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHTTCCCCSSEEEEEEESSCSSSEECCT-
T ss_pred hhheEEEEEcceeeccccCCCeeEEEEcCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCccceeEEEeCCCcccchhcC-
Confidence 9999999999999876 3357899999999999999999999999999999999999999999999996556778877
Q ss_pred cchhhcc-cccccccccchhh--hhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHH--HHH
Q 001905 323 AAMGIFS-SQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA--RYR 397 (997)
Q Consensus 323 agL~i~~-~~lL~~~~~~d~~--~~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~--r~~ 397 (997)
||++++ +.+|++++..+.. .....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|+... .|
T Consensus 278 -glit~~e~~ll~~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~f- 355 (897)
T 2xdt_A 278 -GLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF- 355 (897)
T ss_dssp -TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCGGGGH-
T ss_pred -CeeEEeeeeEeECCCCCcHHHHHHHHHHHHHHHHHHHcCCEeccCCcchhhhhHHHHHHHHHHHHHHhCCcchHHHHH-
Confidence 678895 5688988765432 2344689999999999999999999999999999999999999999886432 12
Q ss_pred HHHHhhhhhhhccC-CCccCCCCCccccCC-CCccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCCCCC
Q 001905 398 RYKANCAVCKADDS-GATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPV 475 (997)
Q Consensus 398 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~l~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~ 475 (997)
.......+..|.. ...|+ ..++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 356 -~~~~~~a~~~D~~~~~~Pi-----~~~v~~p~~i~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~gl~~Yl~~~~~~~-- 427 (897)
T 2xdt_A 356 -FGKCFDAMEVDALNSSHPV-----STPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKN-- 427 (897)
T ss_dssp -HHHHHHHHHHHTSTTCCCS-----SCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTEE--
T ss_pred -HHHHHHHHHhhcccCCCCC-----EEeCCCHHHHHHhcchhhhhhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCC--
Confidence 1111111111211 11122 11222 22345679999999999999999999999999999999999999985
Q ss_pred CCCCHHHHHHHHHHhcC---------------C-C--------cccHHHHHHHhhcCCCccEEEEEEEEeccCcEEEEEE
Q 001905 476 RTLSTKEFRHFANKVGN---------------L-E--------RPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAV 531 (997)
Q Consensus 476 ~~~st~~F~~~~e~v~~---------------~-~--------~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i 531 (997)
++++||++.++++.. . + +.|+++||++|++++|+|+++|+.+ ++.+.|+|
T Consensus 428 --a~~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~dl~~~~~~W~~q~G~P~l~v~~~----~~~~~l~Q 501 (897)
T 2xdt_A 428 --TKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVR----GRNVHMKQ 501 (897)
T ss_dssp --ECHHHHHHHHHTC----------------------------CCCHHHHHHHHHSSCSEEEEEEEEE----TTEEEEEE
T ss_pred --CCHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCHHHHHHHhhcCCCceEEEEEEc----CCEEEEEE
Confidence 799999999887511 1 2 5799999999999999999999875 45678888
Q ss_pred EeeccCCCCCCCCcccCCCCCCCCCCCCCcceeeEEEEeccCCcccccccccCCCceEEEEeecccchhhhhhcCCCCCC
Q 001905 532 LRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGS 611 (997)
Q Consensus 532 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~ 611 (997)
+|+...... + .+....|+.|+++... .++.. + ++-+...+. .
T Consensus 502 ~~f~~~~~~----------~---~~~~~~w~iPi~~~~~-~~~~~-~-----------~~~l~~~~~----~-------- 543 (897)
T 2xdt_A 502 EHYMKGSDG----------A---PDTGYLWHVPLTFITS-KSDMV-H-----------RFLLKTKTD----V-------- 543 (897)
T ss_dssp EEECCC------------------CCCCCCCEEEEEEES-SCSSC-E-----------EEEECSSEE----E--------
T ss_pred EEeecCCCC----------C---CCCCceEEEEEEEEeC-CCCcc-c-----------eEEecCCce----E--------
Confidence 887532110 0 0123479999998532 11111 1 111110000 0
Q ss_pred CCCCCCCCCCccccccccccCCCCceEEEecCCCceeeEecccCc-hhHHHHHHcccC---ChHHHH
Q 001905 612 KPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDG---DVVAQA 674 (997)
Q Consensus 612 ~~~~~~~~~d~~~~~d~~~~~~~~~~wir~Dpd~e~l~~v~~~qp-~~m~~~QL~~dr---dv~aq~ 674 (997)
+ + ...+..||.++++..-..+|+++.. +.....||..+. ++..|.
T Consensus 544 -----------~---~----~~~~~~~i~~N~~~~gyyrV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra 592 (897)
T 2xdt_A 544 -----------L---I----LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRA 592 (897)
T ss_dssp -----------E---E----CSSCCSCEEESGGGCSSCEEEECTTHHHHHHHHHHHCGGGSCHHHHH
T ss_pred -----------E---E----ccCCCceEEECCCceEEEEEEcCHHHHHHHHHHHHhCcccCCHHHHH
Confidence 0 0 0123579999999999999999975 456777887655 554443
No 5
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=100.00 E-value=1.1e-69 Score=677.17 Aligned_cols=567 Identities=15% Similarity=0.131 Sum_probs=417.6
Q ss_pred CCCeEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEecCCceeEEEEEcCeeeeeeeCCCCcccchhhhhhccccC
Q 001905 16 NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVS 95 (997)
Q Consensus 16 ~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 95 (997)
.+++.+.||+|++++++++.+++|.++|+.. .+++.|.||+++ +|++|++||+++.|+..+.
T Consensus 13 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~-~~~~~i~Ld~~~-~I~sv~v~g~~~~~~~~~~---------------- 74 (867)
T 2gtq_A 13 TPAYHILKTDLHFDINEPQTVVKSRLTVEPQ-RVGEPLVLDGSA-KLLSVKINGAAADYVLEGE---------------- 74 (867)
T ss_dssp CCSEEEEEEEEEEEECSSCEEEEEEEEEEES-STTSCEEEECCS-EEEEEEETTEECCCEEETT----------------
T ss_pred CCCCceeEEEEEEEEECCcEEEEEEEEEEEe-CCCCEEEEecCC-CEEEEEECCeecceEeeCC----------------
Confidence 4689999999999999999999999888854 336789999999 9999999999877665421
Q ss_pred CCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCceEEEEEEEEe----cCCceee
Q 001905 96 SPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVE----KVEVGIH 171 (997)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~i~y~~~----~~~~G~~ 171 (997)
.|.|. + ++.+ ...+.|.|... .+..|++
T Consensus 75 -----------------------~L~I~---~---lp~g-------------------~~~l~I~y~~~p~~~~~~~Gly 106 (867)
T 2gtq_A 75 -----------------------TLTIA---G---VPSE-------------------RFTVEVETEILPAENKSLMGLY 106 (867)
T ss_dssp -----------------------EEEES---C---CCSS-------------------CEEEEEEEEECGGGCCSCSEEE
T ss_pred -----------------------EEEEE---e---cCCC-------------------cEEEEEEEEEeccCCCCCcEEE
Confidence 25552 0 1100 11233344331 1224666
Q ss_pred eeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCC-e-EEEEcCceeeeeeccCCCCceEEEEeccCCCcceeeE
Q 001905 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (997)
Q Consensus 172 F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~-~-~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s~ylia 249 (997)
+.+.+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++++.. .++++++++|+.++|||+|++|
T Consensus 107 ~s~~~~~Tq~ep~~AR~~fPc~DeP~~katf~itIt~p~~~y~~~lSNg~l~~~~~--~~~g~~~~~f~~t~pmstYL~A 184 (867)
T 2gtq_A 107 ASGGNLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDGGE--FSDGRHWVKWEDPFSKPSYLFA 184 (867)
T ss_dssp EETTEEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEEETTTCCEEEESSEEEEEEE--CTTSEEEEEEECCSCBCGGGCC
T ss_pred EECCEEEEeeccCCCceeeccCCCCCcceEEEEEEEEccccceEEEeCCcccccee--ecCCeEEEEEEeCCCcccccee
Confidence 6667899999999999999999999999999999999997 6 9999999987653 3567889999999999999999
Q ss_pred EEEeccceeecC----CC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCccccccccc
Q 001905 250 LAVAPFEVLPDH----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (997)
Q Consensus 250 faVG~F~~~~~~----~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga 323 (997)
|+||+|+.+++. .+ .++++|+.|+..+.++++++.++++++|||++||+||||++|++|++|+...++|+++
T Consensus 185 ~~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~d~Vavpdf~~GaMEn~-- 262 (867)
T 2gtq_A 185 LVAGDLAVTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENK-- 262 (867)
T ss_dssp EEEECCEEEEEEEECTTSCEEEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESSCSSSEECCT--
T ss_pred EEEecceEeeeceeccCCCceEEEEEeccccHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCccccccC--
Confidence 999999998752 12 4699999999999999999999999999999999999999999999997556678877
Q ss_pred chhhcc-cccccccccc-hhhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 001905 324 AMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (997)
Q Consensus 324 gL~i~~-~~lL~~~~~~-d~~~-~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~~~ 400 (997)
||++|. +.+|++++.. +... ....+||||+|||||||+|||+||+|+|||||||+|++.+++++..|....++....
T Consensus 263 glitf~e~~ll~~~~~~~~~~~~~i~~vIaHElAHqWfGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~~~~ 342 (867)
T 2gtq_A 263 GLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIR 342 (867)
T ss_dssp TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CceeecccccccCcccCcHHHHHHHHHHHHHHHHHHhcCcEEEecccccccchHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 678884 5677777543 2222 234689999999999999999999999999999999999999988775433332211
Q ss_pred HhhhhhhhccCCCccCCCCCccccCC---CCccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCCCCCCC
Q 001905 401 ANCAVCKADDSGATALSSSASCKDLY---GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRT 477 (997)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~l~---~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~ 477 (997)
.........+.+. ..+++. ..++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 343 ~l~~~~~~~D~~~-------~~~Pi~~~~~~~i~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~glr~Yl~~~~~~~---- 411 (867)
T 2gtq_A 343 LLRQHQFPEDAGP-------TAHPVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLLGEEGFQKGMKLYFQRHDGQA---- 411 (867)
T ss_dssp HHHHHHHHHHHST-------TCCCSSCSEESCGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE----
T ss_pred HHHHHhhhhccCc-------cCCCCcCCChhhhhhhccchhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhCCCC----
Confidence 1111001111111 112221 12345678889999999999999999999999999999999999985
Q ss_pred CCHHHHHHHHHHhcCCCcccHHHHHHHhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCCCCCCC
Q 001905 478 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 557 (997)
Q Consensus 478 ~st~~F~~~~e~v~~~~~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~ 557 (997)
++++||.+.+++++ |.|+.+| ++|++++|+|.++|+..|++ +.++++++|...... ..+.
T Consensus 412 ~t~~Df~~~l~~~s---g~dl~~f-~~W~~q~G~P~l~v~~~~~~--~~~~l~l~Q~~~~~~--------------~~~~ 471 (867)
T 2gtq_A 412 VTCDDFRAAMADAN---GINLDQF-ALWYSQAGTPVLEAEGRLKN--NIFELTVKQTVPPTP--------------DMTD 471 (867)
T ss_dssp ECHHHHHHHHHHHH---TCCCGGG-GHHHHCCSCCEEEEEEEEET--TEEEEEEEEECCCBT--------------TBSC
T ss_pred CCHHHHHHHHHHHh---CCCHHHH-HHHhcCCCCceEEEEEEecC--CEEEEEEEEecCCCC--------------CCCC
Confidence 79999999999988 4689885 89999999999999998854 345566655432100 0012
Q ss_pred CCCcceeeEEEEeccCCcccccccccCCCc--eEEEEeecccchhhhhhcCCCCCCCCCCCCCCCCccccccccccCCCC
Q 001905 558 DIGWPGMMSIRVHELDGMYDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESP 635 (997)
Q Consensus 558 ~~~~~gp~tiri~e~dGt~~h~~~~~~~~~--~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~ 635 (997)
...|++|+++.+.+.+|.- ++.. +.++. ...+.+. . .+.... +... .+.
T Consensus 472 ~~~~~iPi~~~~~~~~g~~-~~~~-~~~~~~~~~~~~l~--~------------------~~~~~~-~~~~-----~~~- 522 (867)
T 2gtq_A 472 KQPMMIPVKVGLLNRNGEA-VAFD-YQGKRATEAVLLLT--E------------------AEQTFL-LEGV-----TEA- 522 (867)
T ss_dssp CCCCCEEEEEEEECTTCCB-CCEE-CSSCEESCEEEEEC--S------------------SEEEEE-EBCC-----CSC-
T ss_pred CceEEEEEEEEEEcCCCcc-cccc-cccccccceEEEEc--C------------------CceEEE-EeCC-----CCC-
Confidence 3479999999998878762 1110 11111 0111110 0 000000 0000 122
Q ss_pred ceEEEecCCCceeeEecccCchhHHHHHHcccCChHHHHHHHHHHHcC-------------C-CCchhHHhHHHhhhccC
Q 001905 636 LSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL-------------P-HLSFNVVNTLNNFLSDS 701 (997)
Q Consensus 636 ~~wir~Dpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~~-------------~-~~s~~~~~~L~~~l~d~ 701 (997)
-|+.++++|....+++.++++.+|..||.+|+|+.+|.+|++.|.+. . .....+..++..++.|+
T Consensus 523 -p~~~l~r~fs~~~~l~~~~~~~~l~~l~~~~~d~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (867)
T 2gtq_A 523 -VVPSLLRGFSAPVHLNYPYSDDDLLLLLAHDSDAFTRWEAAQTLYRRAVAANLATLSDGVELPKHEKLLAAVEKVISDD 601 (867)
T ss_dssp -CEEEESTTCCSSCEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHCS
T ss_pred -CceEecCCCCccEEEECCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhcCc
Confidence 36999999999999999999999999999999999999997665531 1 11234566666666565
Q ss_pred cchhHHHHHHHH
Q 001905 702 KAFWRVRIEAAY 713 (997)
Q Consensus 702 ~~f~~VR~~Aa~ 713 (997)
.--+.|+.++..
T Consensus 602 ~~d~~~~a~~l~ 613 (867)
T 2gtq_A 602 LLDNAFKALLLG 613 (867)
T ss_dssp SSCHHHHHHHTC
T ss_pred CCCHHHHHHHhc
Confidence 546666666654
No 6
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=100.00 E-value=1.6e-69 Score=683.61 Aligned_cols=550 Identities=15% Similarity=0.217 Sum_probs=396.4
Q ss_pred CCCCCCCCCCeEEEEEEEEEEEeccC-----cEEEEEEEEEEEc-CCcceEEEecCCceeEEE----EEcCe---e-e--
Q 001905 9 NEETKVENSGAVVRHQKLCLSIDMEK-----HQIYGYTELEIAV-PDIGIVGLHAENLGIESV----LVDGE---P-T-- 72 (997)
Q Consensus 9 ~~~p~~~~~~~~~~hy~l~L~id~~~-----~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V----~v~g~---~-~-- 72 (997)
..+.++++..++|.||+|.|++|++. .+|+|.|+|++.+ .+++.|.||+++|+|.++ .+++. . .
T Consensus 5 P~~~yRLP~~v~P~hY~l~L~~~l~~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~i~~~~~~~~~~~~~~~~~~~~ 84 (909)
T 4fke_A 5 PWNRYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGHMVVLRGVGDSQVPEI 84 (909)
T ss_dssp GGGSSSCCSSEEEEEEEEEEEECCSCCSSSCCEEEEEEEEEEEESSCEEEEEEECCSCEECCSSSSCEEEESTTCCCCCE
T ss_pred CcccccCcCCCEeEEEEEEEEEcCcCCCCCCceEEEEEEEEEEEecCCCEEEEEcCCCEEEeeeeEEEEecCCCcceecc
Confidence 34557899999999999999988753 4799999999987 578999999999999652 22111 0 0
Q ss_pred -eeeeCCCCcccchhhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccC
Q 001905 73 -EFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPK 151 (997)
Q Consensus 73 -~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~ 151 (997)
...+. .....|.|.++.+ ++.|. .++ +.+.|+|.+.
T Consensus 85 ~~~~~~-------------------------------------~~~~~l~i~l~~~---l~~g~-~~~--l~i~y~g~~~ 121 (909)
T 4fke_A 85 DRTELV-------------------------------------ELTEYLVVHLKGS---LQPGH-MYE--MESEFQGELA 121 (909)
T ss_dssp EEEEEE-------------------------------------TTTTEEEEEEEEE---ECTTC-EEE--EEEEEEEECC
T ss_pred cceEEe-------------------------------------cCCcEEEEEcCCC---cCCCC-EEE--EEEEEEEEEC
Confidence 01111 0112366655432 22222 123 3467788876
Q ss_pred CC-ceEEEEEEEEecCCceeeeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeee-ccCC
Q 001905 152 QN-VKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVL-SKDD 229 (997)
Q Consensus 152 ~~-~~~i~i~y~~~~~~~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~-~~~~ 229 (997)
.. .|+++..|... ..+ +++++|||||.+||+||||+|+|+.||||+|+|++|++|+|+|||+++++.. ..++
T Consensus 122 ~~~~G~y~s~y~~~--~~~----~~~~~Tqfep~~AR~~FPc~DeP~~KAtf~i~i~~p~~~~alSN~~~~~~~~~~~~~ 195 (909)
T 4fke_A 122 DDLAGFYRSEYMEG--NVK----KVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAED 195 (909)
T ss_dssp SSSSEEEEEEEEET--TEE----EEEEEEECTTTTGGGTSCBCCSTTSCBEEEEEEEEETTSEEEESSCBSSSCEECTTC
T ss_pred CCCeEEEEeeEEEC--Cce----EEEEEEcCcccCcCEEEEeCCccccceEEEEEEEECCCCEEEcCCcccccccceecC
Confidence 54 48999998752 222 5788999999999999999999999999999999999999999999876532 2356
Q ss_pred CCceEEEEeccCCCcceeeEEEEeccceeecCC--CCcEEEEEcCCchhH--HHHHHHHHHHHHHHHHHhhCCCCCCCCc
Q 001905 230 PPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHH--QSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSY 305 (997)
Q Consensus 230 ~~~kt~~F~~t~p~s~yliafaVG~F~~~~~~~--~~~v~~~~~p~~~~~--~~~~~~~~~~~l~~~e~~~g~~YP~~k~ 305 (997)
+++++++|+.++|||+|++||+||+|+.++... +.++++|++|+..+. ..++++.++++++|||++||+||||+||
T Consensus 196 ~~~~~~~f~~t~pmstYL~a~~vg~f~~~~~~~~~g~~~~v~~~p~~~~~~~~~~al~~~~~~l~~~e~~~~~~Yp~~k~ 275 (909)
T 4fke_A 196 PNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKS 275 (909)
T ss_dssp TTEEEEEBCCCCSBCGGGCCEEEESCEEEEEECTTSCEEEEEECHHHHHTTTTHHHHHHHHHHHHHHHHHTTSCCSSSEE
T ss_pred CCeEEEEEecCCCccceeeEEEecceEEEeeccCCCcEEEEEEecchhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 789999999999999999999999999887643 568999999987654 4689999999999999999999999999
Q ss_pred cEEEECCCCcccccccccchhhc-ccccccccccchhhh--hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHH
Q 001905 306 KQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVIDQAI--DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (997)
Q Consensus 306 ~~V~vp~~~~~~~~~~gagL~i~-~~~lL~~~~~~d~~~--~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~ 382 (997)
++|++|+...++|+++ ||+++ ++.+|++++...... ....+||||+|||||||+|||+||+|+|||||||+|+++
T Consensus 276 d~v~vpdf~~gaMEn~--glit~~e~~ll~d~~~s~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGFAty~e~ 353 (909)
T 4fke_A 276 DQIALPDFNAGAMENW--GLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEY 353 (909)
T ss_dssp EEEEETTCTTCEECCT--TEEEEEHHHHCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHH
T ss_pred cEEEecCCCCcccccC--cccccccceeecCcccCChHHHHHHHHHHHHHHHhhhhcCeecccccCcceeehHHHHHHHH
Confidence 9999997667788887 67888 466889887654322 334589999999999999999999999999999999999
Q ss_pred HHHHHHhCCcHHHHHH-HHHhhhhhhhcc-CCCccCCCCCccccCC-CCccccccccchhhhHHHHHHHHHHHhchHHHH
Q 001905 383 SFIKKFLGNNEARYRR-YKANCAVCKADD-SGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFR 459 (997)
Q Consensus 383 ~~~~~~~G~~e~r~~~-~~~~~~~~~~~~-~~~~~l~~~~~~~~l~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~ 459 (997)
+++++.+|.....-.. ..........+. ....|+..+ ..++. +.++...|+.++|.||++|||||++.||++.|+
T Consensus 354 ~~~~~~~~~~~~~~~f~~~~~~~~~~~d~~~~~~pi~~~--~~~v~~~~~i~~~fd~i~Y~KGa~vL~mL~~~lG~e~F~ 431 (909)
T 4fke_A 354 LGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTP--AEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFK 431 (909)
T ss_dssp HHHHHHSTTSCGGGGHHHHTHHHHHHHHTSTTCCCSCCC--GGGCCSHHHHHTTSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhccccccHHHhhhhhHHHHHHHHhhhcccCCcccc--ccccCChhhHHhhhhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999998875431100 001111111111 111222110 01121 234567899999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCHHHHHHHHHHhcCCC-----cccHHHHHHHhhcCCCccEEEEEEEEeccCcEEEEEEEee
Q 001905 460 KILQNIISRAQGASPVRTLSTKEFRHFANKVGNLE-----RPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRD 534 (997)
Q Consensus 460 ~~L~~yl~~~~~~~~~~~~st~~F~~~~e~v~~~~-----~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~ 534 (997)
++|+.|++++++++ ++++||.+.++++++.. +.++++||++|++++|+|+++|+.+ .+ .++|+|+
T Consensus 432 ~gl~~Yl~~~~~~n----a~~~Dl~~~l~~~s~~~~~~~~~~~v~~~~~~W~~q~G~Pvv~V~~~----~~--~~~q~~~ 501 (909)
T 4fke_A 432 EGLASYLHAFAYQN----TTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTK----TG--NISQKHF 501 (909)
T ss_dssp HHHHHHHHHHTTEE----ECHHHHHHHHHHHHHTCSSCCCSSCHHHHHHHHHSSCSCEEEEEETT----TT--EEEEEEC
T ss_pred HHHHHHHHhhcccC----CCHHHHHHHHHHHhCcccccccchhHHhHhhCccccCCCcEEEEEec----cC--cEEEEEE
Confidence 99999999999996 79999999888876421 2469999999999999999999542 23 3677776
Q ss_pred ccCCCCCCCCcccCCCCCCCCCCCCCcceeeEEEEeccCCcccccccccCCCceEEEEeecccchhhhhhcCCCCCCCCC
Q 001905 535 CTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPD 614 (997)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~ 614 (997)
......... ........|++|++... +|...... +. .+. .+ . .
T Consensus 502 ~~~~~~~~~---------~~~~~~~~w~IPl~~~~---~~~~~~~~-------~~-~~~---~~------~------~-- 544 (909)
T 4fke_A 502 LLDSESNVT---------RSSAFDYLWIVPISSIK---NGVMQDHY-------WL-RDV---SQ------A------Q-- 544 (909)
T ss_dssp CSCTTCCCC---------SCCTTTTCCCEEECEEE---TTEECCCE-------EE-CSC---SE------E------E--
T ss_pred EeccCCCCC---------CCCCCCceEEEEEEEEe---CCCccceE-------Ee-ecc---cc------c------e--
Confidence 533211100 01122447999998643 22211100 00 000 00 0 0
Q ss_pred CCCCCCCccccccccccCCCCceEEEecCCCceeeEecccCc-hhHHHHHHcccCChH
Q 001905 615 GCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDGDVV 671 (997)
Q Consensus 615 ~~~~~~d~~~~~d~~~~~~~~~~wir~Dpd~e~l~~v~~~qp-~~m~~~QL~~drdv~ 671 (997)
.+ + ....+..||.++++..-..+|+++.. +.+...||+.+.+.+
T Consensus 545 -----~~-~-------~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~~~i 589 (909)
T 4fke_A 545 -----ND-L-------FKTASDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVI 589 (909)
T ss_dssp -----CG-G-------GCCCTTCCEEESGGGCSSCEEEECHHHHHHHHHHHHHCGGGS
T ss_pred -----ee-e-------ccCCCCCeEEECCCceEEEEEecCHHHHHHHHHHHHhCcccC
Confidence 00 0 00123479999999999999999975 556677887665443
No 7
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=100.00 E-value=1.6e-68 Score=664.02 Aligned_cols=545 Identities=15% Similarity=0.206 Sum_probs=406.2
Q ss_pred eEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEecCCceeEEEEEcCeeeeeeeCCCCcccchhhhhhccccCCCC
Q 001905 19 AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPS 98 (997)
Q Consensus 19 ~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 98 (997)
++|.||+|+|++|+++.+|.|.|+| . .+++.|.||+++|+|++|+++|.++.|++.+.
T Consensus 1 v~p~hY~l~l~~~~~~~~f~G~v~I--~-~~~~~i~L~~~~l~I~~v~~~g~~~~~~~~~~------------------- 58 (780)
T 1z5h_A 1 MEVEKYDLTLDFDIQKRTFNGTETI--T-ADAGDIVLDAVGLQINWMKVNGRDTAFTYDGQ------------------- 58 (780)
T ss_dssp CCEEEEEEEEEEETTTTEEEEEEEE--E-ECSSCEEEECSSCEEEEEEETTEECCCEECSS-------------------
T ss_pred CEEEEEEEEEEEECCCCEEEEEEEE--E-cCCCEEEEEccCCEEEEEEEeceeccEEEECC-------------------
Confidence 4699999999999999999999999 4 66789999999999999999998887765431
Q ss_pred chHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCC-ceEEEEEEEEecCCceeeeeeceE
Q 001905 99 SAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKVEVGIHFDGNAL 177 (997)
Q Consensus 99 ~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~i~i~y~~~~~~~G~~F~~~~~ 177 (997)
.|.|.++ + | .+++ .+.|.|.+... .|+++..|. ++++
T Consensus 59 --------------------~l~i~~~-~------g--~~~l--~i~y~g~~~~~~~G~y~~~y~-----------~~~~ 96 (780)
T 1z5h_A 59 --------------------TVRAPGD-S------Q--PQKI--EISFAGKVSDSLSGIYYAGRE-----------NGMI 96 (780)
T ss_dssp --------------------EEEECCC-S------S--SEEE--EEEEEEECBSSSSEEEEESST-----------TCEE
T ss_pred --------------------EEEEEeC-C------c--cEEE--EEEEEEEeCCCcccceecccc-----------ceEE
Confidence 2555331 1 1 1222 23455544332 244443321 4678
Q ss_pred eeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEeccCCCcceeeEEEEeccce
Q 001905 178 HTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEV 257 (997)
Q Consensus 178 ~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliafaVG~F~~ 257 (997)
+||+||.+||+||||+|+|+.||+|+++|++|++|+|+|||++.++ .++++++++|+.++|||+|++||+||+|+.
T Consensus 97 ~Tq~ep~~AR~~fPc~DeP~~Katf~iti~~p~~~~~lSN~~~~~~----~~~g~~~~~f~~t~~mstYL~a~~vg~f~~ 172 (780)
T 1z5h_A 97 TTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRI----EVSERKVVEFQDTPRMSTYLLYVGIGKFRY 172 (780)
T ss_dssp EEECTTTCGGGTSCBCCCTTSCBEEEEEEEECTTCEEEESSCEEEE----EESSSEEEEECCCCSBCGGGCCEEEECCEE
T ss_pred EEccccCChhheeecCCCcccccEEEEEEEECCCCEEEeCCccccc----cCCCceEEEEecCCcccceEEEEEEeccEE
Confidence 9999999999999999999999999999999999999999998765 235788999999999999999999999999
Q ss_pred eecCC-CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCCcccccccccchhhcc-cccccc
Q 001905 258 LPDHH-QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFS-SQILYD 335 (997)
Q Consensus 258 ~~~~~-~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagL~i~~-~~lL~~ 335 (997)
++... +.++++|++|+ +.++++++.++++++||+++||+||||+||++|++|+...++|+++ |++++. +.+|++
T Consensus 173 ~~~~~~gv~~~v~~~~~--~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~--glit~~e~~ll~~ 248 (780)
T 1z5h_A 173 EYEKYRDIDLILASLKD--IRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENW--GAITFREIYMDIA 248 (780)
T ss_dssp EEEEETTEEEEEEESSC--CCCSHHHHHHHHHHHHHHHHHSSCCSSSEEEEEEETTCTTCEECCT--TEEEEEHHHHSCC
T ss_pred EeeccCCeeEEEEEccc--hhHHHHHHHHHHHHHHHHHHhCCCCCCccCCEEEcCCCCCCccccc--CeeEeecceEeec
Confidence 87643 56899999998 6678999999999999999999999999999999996545678877 678884 568887
Q ss_pred cccchhh-hhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHhhhhhhhccC-
Q 001905 336 EKVIDQA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA--RYRRYKANCAVCKADDS- 411 (997)
Q Consensus 336 ~~~~d~~-~~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~--r~~~~~~~~~~~~~~~~- 411 (997)
+...... .....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|+..+ .|... ........|..
T Consensus 249 ~~~~~~~~~~~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfA~y~~~~~~~~~~~~~~~~~~f~~~-~~~~al~~D~~~ 327 (780)
T 1z5h_A 249 ENSAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVS-RTSGALRSDSLK 327 (780)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHH-THHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCcccccccHHHHHHHHHHHHHHhCCchhHHHHHHHH-HHHHHHHHhhcc
Confidence 3322222 2234689999999999999999999999999999999999999999998653 11111 11111111211
Q ss_pred CCccCCCCCccccCC-CCccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHh
Q 001905 412 GATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKV 490 (997)
Q Consensus 412 ~~~~l~~~~~~~~l~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~e~v 490 (997)
...|+ ..++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++||.+.++++
T Consensus 328 ~~~pi-----~~~v~~~~~~~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~----~t~~Dl~~~l~~~ 398 (780)
T 1z5h_A 328 NTHPI-----EVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGN----AEGSDLWTAIEDV 398 (780)
T ss_dssp TCCCS-----CCCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHH
T ss_pred CCCCc-----eecCCCHHHHHHhcchhhhhhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCC----CCHHHHHHHHHHH
Confidence 11122 11222 23455679999999999999999999999999999999999999985 7999999999998
Q ss_pred cCCCcccHHHHHHHhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCCCCCCCCCCcceeeEEEEe
Q 001905 491 GNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVH 570 (997)
Q Consensus 491 ~~~~~~dL~~f~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~tiri~ 570 (997)
+ |.|+++||++|++++|+|+++|+. + ++.+.++|+|+.... .....|+.|+++ .
T Consensus 399 s---g~dl~~~~~~W~~~~G~P~l~v~~--~--~~~~~l~Q~~f~~~~-----------------~~~~~w~iPi~~-~- 452 (780)
T 1z5h_A 399 S---GKPVKRVMEYWIKNPGYPVIKLKR--N--GRKITMYQTRFLLNG-----------------EEEGRWPVPVNI-K- 452 (780)
T ss_dssp H---CSCHHHHHHHHHHSCSCEEEEEEE--S--SSEEEEEEEECCSSC-----------------CEECCCCEEEEE-E-
T ss_pred h---CCCHHHHHHHHHhCCCCceEEEEe--c--CcEEEEEEEEecCCC-----------------CCCceEEEEEEE-c-
Confidence 7 568999999999999999999987 2 456788888764311 012379999998 2
Q ss_pred ccCCcccccccccCCCceEEEEeecccchhhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEEEecCCCceeeE
Q 001905 571 ELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAE 650 (997)
Q Consensus 571 e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wir~Dpd~e~l~~ 650 (997)
.+|. .+ .. +. .+ . .. + ..+ .||.++++..-.++
T Consensus 453 -~~~~-~~-----------~~-l~--~~----------~----------~~-~---------~~~-~~i~~N~~~~gyyr 485 (780)
T 1z5h_A 453 -KKDG-VE-----------RI-LL--ED----------E----------AS-I---------EAD-GLIKINADSAGFYR 485 (780)
T ss_dssp -ETTE-EE-----------EE-EE--CS----------S----------EE-E---------ECT-TEEEESGGGCSSSE
T ss_pred -CCCc-ee-----------ee-cc--Cc----------e----------EE-c---------cCC-ceEEEeCCCCEEEE
Confidence 2232 11 01 11 00 0 00 1 012 79999999999999
Q ss_pred ecccCchh-HHHHHHcccCChHHH---HHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001905 651 IHFNQPVQ-MWINQLEKDGDVVAQ---AQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (997)
Q Consensus 651 v~~~qp~~-m~~~QL~~drdv~aq---~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (997)
|+++...+ ....+|. .=++..| +..+-+|.+....+....-.|.+.|.+|. .|.|...|...|..+..
T Consensus 486 v~Yd~~~~~~l~~~l~-~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~-~~~~w~~~~~~l~~~~~ 557 (780)
T 1z5h_A 486 VLYDDATFSDVMGHYR-DLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDE-DHNVITAIVGQMEYLRM 557 (780)
T ss_dssp EECCHHHHHHHHHTGG-GCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGTTCC-CHHHHHHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHh
Confidence 99985422 3333452 3477777 34455555433344444445667787764 88899888888876644
No 8
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=100.00 E-value=1.3e-68 Score=648.72 Aligned_cols=453 Identities=17% Similarity=0.259 Sum_probs=345.7
Q ss_pred CCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-C-CcceEEEecCCceeEEEEEcCeeeeeeeCCCCcccchhhhhhcccc
Q 001905 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-P-DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMV 94 (997)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~-~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~~ 94 (997)
..+++.||+|+|++|+++++|+|.++|++.+ . .++.|.||+++|+|++|++||+++.|...... .
T Consensus 12 ~~~rv~Hy~L~l~vD~~~~~~~G~v~I~~~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~~-~------------ 78 (608)
T 3u9w_A 12 SVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGERQ-S------------ 78 (608)
T ss_dssp TTEEEEEEEEEEEEETTTTEEEEEEEEEEEECSTTEEEEEEEESSCEEEEEEETTEECCEEECCCC-G------------
T ss_pred cCCCceEEEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEEEECCEEcceeccccc-c------------
Confidence 3468999999999999999999999999986 3 36899999999999999999999988765420 0
Q ss_pred CCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCceEEEEEEEEecCCceeeeee
Q 001905 95 SSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDG 174 (997)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~i~y~~~~~~~G~~F~~ 174 (997)
.....|.|.++.+ ++.+. ++.+.+.|.|.+... ++....+ ....|- ..
T Consensus 79 --------------------~~~~~l~I~l~~~---l~~g~---~~~l~I~y~~~~~~~-~~~~~~~---~~~~g~--~~ 126 (608)
T 3u9w_A 79 --------------------YKGSPMEISLPIA---LSKNQ---EIVIEISFETSPKSS-ALQWLTP---EQTSGK--EH 126 (608)
T ss_dssp --------------------GGCEEEEEEEEEE---ECTTC---EEEEEEEEECCTTCT-TEEEECG---GGSSSS--SS
T ss_pred --------------------ccCceEEEEcCCC---CCCCC---EEEEEEEEEEEcCCC-ceeeecc---cccCCC--cc
Confidence 0011366655321 11111 112223444443321 1111111 111111 14
Q ss_pred ceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEeccCCCcceeeEEEEec
Q 001905 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (997)
Q Consensus 175 ~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~~~~~~~~kt~~F~~t~p~s~yliafaVG~ 254 (997)
++++|||||.+||+||||+|+|+.||||+++|++|++++|+|||.+.++...+.++++++++|..++|||+|++||+||+
T Consensus 127 ~~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p~~~~alsng~~~~~~~~~~~~~~~~~~f~~t~pmstYL~a~~vg~ 206 (608)
T 3u9w_A 127 PYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGA 206 (608)
T ss_dssp CEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEEEETTSEEEESSEEEEEEECTTCTTEEEEEEEEEEEECGGGCCEEEES
T ss_pred eEEEEcccCCCCCEEEEecCccceeEEEEEEeeCCcceeeeeeccccceeeccCCCCeEEEEEEecCCcccEEEEEEEee
Confidence 67999999999999999999999999999999999999999999998776666678899999999999999999999999
Q ss_pred cceeecCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCC-cccccccccchhhcccccc
Q 001905 255 FEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEM-AVSSSTFGAAMGIFSSQIL 333 (997)
Q Consensus 255 F~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~-~~~~~~~gagL~i~~~~lL 333 (997)
|+..+. +..+.+|+.|+..+.+.++++.+.+++++||+++| ||||+++++|++|+++ .++|+++ ||+++++.+|
T Consensus 207 f~~~~~--~~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~~g-~Yp~~~~~~vv~~p~f~~GgMEn~--gl~~~~~~~l 281 (608)
T 3u9w_A 207 LESRQI--GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP--CLTFVTPTLL 281 (608)
T ss_dssp CEEEEE--ETTEEEEECHHHHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCT--TEEEECGGGC
T ss_pred eeeEec--CCceEEEeChhhHHHHHHHHHHHHHHHHhHHhcCC-CCCchhhceeeecccccchhhhcC--cceeeeeeee
Confidence 988764 56788999999999999999999999999999998 9999999999986443 4567765 6788877766
Q ss_pred cccccchhhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhhhhh--hccC
Q 001905 334 YDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCK--ADDS 411 (997)
Q Consensus 334 ~~~~~~d~~~~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~~~~~~~~~~--~~~~ 411 (997)
..+..+ ..+||||+|||||||+||++||+|+|||||||+|++++++++.+|.+...+........... ....
T Consensus 282 ~~~~~~------~~viaHElAHqWfGnlVT~~~W~d~WLnEGfAty~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (608)
T 3u9w_A 282 AGDKSL------SNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFG 355 (608)
T ss_dssp CSSSTT------THHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccchh------HHHHHHHhhhhhhcCcCccccccchhHHHhHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhhh
Confidence 554322 34799999999999999999999999999999999999999999987654332221111110 0011
Q ss_pred CCccCCCCCccccCCCCccccccccchhhhHHHHHHHHHHHhc-hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHh
Q 001905 412 GATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKV 490 (997)
Q Consensus 412 ~~~~l~~~~~~~~l~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG-~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~e~v 490 (997)
...++... ..+....+....|+.++|.||++|||||++.|| ++.|+++|+.|++++++++ ++++||.++++++
T Consensus 356 ~~~p~~~~--~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~~~F~~~lr~Yl~~~~~~~----~tt~Df~~~l~~~ 429 (608)
T 3u9w_A 356 ETHPFTKL--VVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDFLYSY 429 (608)
T ss_dssp TTCGGGSS--SCCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHH
T ss_pred ccCCcccc--ccccccCChhhcccHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHH
Confidence 11122111 111222223457899999999999999999998 6789999999999999995 7999999999988
Q ss_pred cCCCcccHHHH----HHHhhcCCCccEEEEEEEEeccCcEEEEEEEee
Q 001905 491 GNLERPFLKEF----FPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRD 534 (997)
Q Consensus 491 ~~~~~~dL~~f----~~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~ 534 (997)
+ +.+++.+ |++|++++|+|.++|+++++..+..+.++|++.
T Consensus 430 ~---~~~~~~~~~~~~~~W~~~~G~P~v~v~~d~~~~~~~~~l~q~~~ 474 (608)
T 3u9w_A 430 F---KDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWI 474 (608)
T ss_dssp T---GGGHHHHHTSCHHHHHHCCSSCSSCCCCCCTTTHHHHHHHHHHH
T ss_pred h---ccccchhhHHHHHHHhcCCCCCceeeeeccccccceeeHHhHHh
Confidence 7 4577777 999999999999999887766666666666543
No 9
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=100.00 E-value=7.8e-63 Score=597.78 Aligned_cols=433 Identities=18% Similarity=0.273 Sum_probs=327.8
Q ss_pred CCCC--CCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEcC-C-cceEEEecCCceeEEEEE-c--C--eeeeeeeCCCC
Q 001905 10 EETK--VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-D-IGIVGLHAENLGIESVLV-D--G--EPTEFEYYPHN 80 (997)
Q Consensus 10 ~~p~--~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~-~~~I~L~a~~l~I~~V~v-~--g--~~~~f~~~~~~ 80 (997)
.||. ..+..+.|.||+|+|++|+++.+|+|.|+|++.+. + ++.|.||+++|+|.+|++ | | +++.|++.+.
T Consensus 15 ~d~~~~~~p~~~~~~hy~l~l~~d~~~~~~~G~v~I~~~~~~~~~~~i~Ld~~~l~I~~v~v~~~~g~~~~~~~~~~~~- 93 (605)
T 3cia_A 15 TDAYTYANYDQVKATHVYLDLNVDFDKKSLSGFAELSLDWFTDNKAPLILDTRDLVIHRVMAKNSQGQWVKVNYDLAKR- 93 (605)
T ss_dssp CCSSCCCCTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEECCSSCCCEEEBCSSEEEEEEEEECTTCCEEEECEEEEEE-
T ss_pred CCcccccCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEEEEEcCCCCccceeEEecCc-
Confidence 4543 45578999999999999999999999999999863 3 689999999999999999 8 8 7777766432
Q ss_pred cccchhhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCceEEEEE
Q 001905 81 HQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRID 160 (997)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~i~ 160 (997)
+.. ....|.|.++ . +.++ +.+.|+|.+.. .++
T Consensus 94 ~~~--------------------------------~~~~l~i~l~-------~--~~~~--l~i~y~~~~~~-~gl---- 125 (605)
T 3cia_A 94 DDV--------------------------------LGSKLTINTP-------L--NAKK--VRVYYNSTEKA-TGL---- 125 (605)
T ss_dssp CSS--------------------------------SCEEEEECCC-------T--TCSE--EEEEEEECTTC-TTE----
T ss_pred ccc--------------------------------CCCeEEEEeC-------C--ceEE--EEEEEEEecCC-Cce----
Confidence 000 0113666432 0 1112 23445555432 121
Q ss_pred EEEec-CCceeeeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEec
Q 001905 161 YWVEK-VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRL 239 (997)
Q Consensus 161 y~~~~-~~~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~~~~~~~~kt~~F~~ 239 (997)
+|+.. ..+|- ..++++|||||.+||+||||+|+|+.||+|+++|++|++|+|+|||....+. ..+ .+++|+.
T Consensus 126 ~~~~~~~~~g~--~~~~~~Tq~ep~~AR~~fPc~D~P~~katf~i~i~~p~~~~alsng~~~~~~---~~~--~~~~f~~ 198 (605)
T 3cia_A 126 QWLSAEQTAGK--EKPFLFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGT---ERD--GDYFFSM 198 (605)
T ss_dssp EEECGGGSSSS--SSCEEEECCTTTTGGGTSCBCCCTTCCEEEEEEEECCTTCEEEESSEEC-------CC--SEEEEEE
T ss_pred EEecccccCCC--cccEEEecCcccChhhceecCCCcCceeEEEEEEEEcCCcEEEecCCcccee---cCC--CeEEEee
Confidence 22221 01221 2467899999999999999999999999999999999999999999654331 122 2799999
Q ss_pred cCCCcceeeEEEEeccceeecCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEECCCC-cccc
Q 001905 240 DVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEM-AVSS 318 (997)
Q Consensus 240 t~p~s~yliafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~-~~~~ 318 (997)
++|||+|++||+||+|+..+. +.++++|++|+..+.++++++.+.+++++||++|| ||||++|++|++|+++ .++|
T Consensus 199 t~pmstYl~a~~vg~f~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~fG-~YP~~k~d~v~~p~~f~~GgM 275 (605)
T 3cia_A 199 PQAIPPYLIAIGVGDLEFKAM--SHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYG-KYRWGRYDLLMLPPSFPFGGM 275 (605)
T ss_dssp EEEECGGGCCEEEESCEEEES--SSSEEEEECSTTHHHHHHHSTTHHHHHHHHHHHHC-CCTTSCEEEEECCTTCSSSEE
T ss_pred CCCccceeEEEEEeeeeEecC--CCeEEEEeccChHHHHHHHHHHHHHHHHHHHHHhC-CCCCccccEEEECCccCCCcc
Confidence 999999999999999999875 45799999999999999999999999999999999 9999999999996443 4567
Q ss_pred cccccchhhcccccccccccchhhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Q 001905 319 STFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR 398 (997)
Q Consensus 319 ~~~gagL~i~~~~lL~~~~~~d~~~~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~ 398 (997)
+++ |+++.+..+|.++.. ...+||||+|||||||+|||+||+|+|||||||+|++++++++.+|++..++..
T Consensus 276 En~--gltf~~~~ll~~~~~------~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~ 347 (605)
T 3cia_A 276 ENP--RLSFITPTVVAGDKS------LVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQ 347 (605)
T ss_dssp CCT--TEEEECGGGCCSSSC------STHHHHHHHHHTTBTTTEEESSTTSTHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCC--cEEEecchhccCcHH------HHHHHHHHHHHHhhccccccCcchHhHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 777 455446667665431 245899999999999999999999999999999999999999999987554432
Q ss_pred HH---Hhhhhhhhcc-CCCccCCCCCccccCCCCccccccccchhhhHHHHHHHHHHHhchHHHHHHHHHHHHhhcCCCC
Q 001905 399 YK---ANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASP 474 (997)
Q Consensus 399 ~~---~~~~~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~ 474 (997)
.. .....+. .. ....++. .++.+.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 348 ~~~~~~l~~~l~-~~~~~~~pl~-----~~~~~~~~~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~~lr~yl~~~~~~~- 420 (605)
T 3cia_A 348 ALGAQDLNAEIL-ELDASDTQLY-----IDLKGRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQS- 420 (605)
T ss_dssp HHHHHHHHHHHH-HSCTTTTSSS-----CCCTTCCTTTSCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTTEE-
T ss_pred HHHHHHHHHHHH-hhccCCCCcc-----cCCCCCChhHhhCccchhHHHHHHHHHHHHhChHHHHHHHHHHHHHhCcCC-
Confidence 21 1111111 11 1111221 122223445678999999999999999999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHhcCCC-cccHHH-HHHHhhcCCCccEEEEEEE
Q 001905 475 VRTLSTKEFRHFANKVGNLE-RPFLKE-FFPRWVGTCGCPVLRMGFS 519 (997)
Q Consensus 475 ~~~~st~~F~~~~e~v~~~~-~~dL~~-f~~qWv~~~G~P~l~V~~~ 519 (997)
+++++|++.++++++.. ..+++. +|++|++++|+|.++++++
T Consensus 421 ---~t~~df~~~l~~~~~~~~~~~l~~~~~~~W~~~~G~P~~~~~~~ 464 (605)
T 3cia_A 421 ---LGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQPT 464 (605)
T ss_dssp ---ECHHHHHHHHHHTTTTTSTTSSCHHHHHHHHHSSSCCSSSCCCC
T ss_pred ---CCHHHHHHHHHHHhccccccccchhhHHHHhcCCCCCceeccCC
Confidence 79999999999987420 124555 7999999999999987653
No 10
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=100.00 E-value=6.1e-63 Score=600.50 Aligned_cols=435 Identities=18% Similarity=0.256 Sum_probs=327.2
Q ss_pred CCCC--CCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CC----cceEEEecCCceeEEEEEcCeeeeeeeCCCCcc
Q 001905 10 EETK--VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PD----IGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQ 82 (997)
Q Consensus 10 ~~p~--~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~----~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~ 82 (997)
.||. ..+..+.|.||+|+|++|+++++|.|.++|++.+ .+ ++.|.||+++|+|++|++||.++.|...+.. .
T Consensus 17 ~d~~~~~~p~~~~~~hY~L~l~~d~~~~~~~G~v~I~~~~~~~~~~~~~~i~Ld~~~l~I~~v~v~g~~~~~~~~~~~-~ 95 (632)
T 2xq0_A 17 YDQSTLSNYKDFAVLHTDLNLSVSFEKSAISGSVTFQLKKLHEGKNKSDELHLDTSYLDVQEVHIDGSKADFQIEQRK-E 95 (632)
T ss_dssp CCTTCCSCGGGEEEEEEEEEEEEETTTTEEEEEEEEEEEECC---CCCCEEEEBCSSEEEEEEEETTEECCEEECCCB-T
T ss_pred CCcccccCCCceeEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCcCcEEEEEccCCEEEEEEECCeecceEEcccc-c
Confidence 3543 3446899999999999999999999999999986 34 7899999999999999999998888765420 0
Q ss_pred cchhhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCceEEEEEEE
Q 001905 83 NVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYW 162 (997)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~i~y~ 162 (997)
.....|.|.++.+ + +.+ .+.+.|+|.+... |+ +|
T Consensus 96 --------------------------------~~~~~l~I~l~~~------g-~~~--~l~I~Y~g~~~~~-gl----~~ 129 (632)
T 2xq0_A 96 --------------------------------PLGSRLVINNASC------N-DNF--TLNIQFRTTDKCT-AL----QW 129 (632)
T ss_dssp --------------------------------TTBCCEEEECCCS------S-SEE--EEEEEEEECTTCS-SE----EE
T ss_pred --------------------------------ccCcEEEEEecCC------C-CEE--EEEEEEeeecCcC-cc----ee
Confidence 0112477765322 1 111 2233445544321 11 12
Q ss_pred Eec-CCceeeeeeceEeeccccCCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEeccC
Q 001905 163 VEK-VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDV 241 (997)
Q Consensus 163 ~~~-~~~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~~~avsnG~l~~~~~~~~~~~~kt~~F~~t~ 241 (997)
+.. ..+|- .++++|||||.+||+||||+|+|+.||||+++|++| ++|++||.++++.. . +..+++|+.++
T Consensus 130 ~~~~~~~g~---~~~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p--~~vv~sg~~~~~~~--~--~~~~~~F~~t~ 200 (632)
T 2xq0_A 130 LNSKQTKGG---KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESP--LPVVFSGIRIEDTS--K--DTNIYRFEQKV 200 (632)
T ss_dssp ECTTTSTTS---SCEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEECS--SCEEESSEECCCC--------CEEEEEEEE
T ss_pred ecccccCCC---ceEEEeccccCCcceeeeecCCcccceEEEEEEEEc--hHHhccCcccccee--c--CCCeEEEEeCC
Confidence 211 01221 367899999999999999999999999999999999 99999997765432 1 22489999999
Q ss_pred CCcceeeEEEEeccceeecCCCCcEEEEEcCCchhHHHHHHH-HHHHHHHHHHHhhCCCCCCCCccEEEECCCC-ccccc
Q 001905 242 PVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLAPEM-AVSSS 319 (997)
Q Consensus 242 p~s~yliafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~-~~~~~ 319 (997)
|||+|++||+||+|+..+. +..+++|++|+..+.+++++. .+.+++++||++|| ||||++|++|++|+++ .++|+
T Consensus 201 pmstYLva~~vg~f~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~fG-pYP~~k~d~v~~pp~f~~GgME 277 (632)
T 2xq0_A 201 PIPAYLIGIASGDLSSAPI--GPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIF-EYEWGTYDILVNVDSYPYGGME 277 (632)
T ss_dssp EECGGGCCEEESSCEEEEE--ETTEEEEECHHHHHHHHHHHTTTHHHHHHHHHHHSC-CCCSSCCCEEECCTTCCSSEEC
T ss_pred ccchhheeeeEecceeecc--CCeeEEEEccchHHHHHHHHHHHHHHHHHHHHHhcc-cCCcccccEEEECCCCCCCccc
Confidence 9999999999999999875 457999999998888889998 99999999999999 9999999999996433 55678
Q ss_pred ccccchhhcccccccccccchhhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q 001905 320 TFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY 399 (997)
Q Consensus 320 ~~gagL~i~~~~lL~~~~~~d~~~~~~~~iaHElAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~~~ 399 (997)
++ |+++.++.+|.++.. ...+||||+|||||||+||++||+|+|||||||+|++++++++.+|++.+++...
T Consensus 278 n~--glt~~~~~ll~~~~~------~~~viaHElAHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~ 349 (632)
T 2xq0_A 278 SP--NMTFATPTLLAHDRS------NIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSAL 349 (632)
T ss_dssp CT--TCEEECGGGCCSSSC------STHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cc--eEEEeeceeccCchh------HHHHHHHHHHHHHhcCCCccCCcchhhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 77 465556667765431 2458999999999999999999999999999999999999999999876544432
Q ss_pred HHhhhhh--hhccCCCccCCCCCccccCC-CCccccccccchhhhHHHHHHHHHHHhch-HHHHHHHHHHHHhhcCCCCC
Q 001905 400 KANCAVC--KADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQGASPV 475 (997)
Q Consensus 400 ~~~~~~~--~~~~~~~~~l~~~~~~~~l~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~-e~F~~~L~~yl~~~~~~~~~ 475 (997)
....... ........++.. ...++. +.++...|+.++|.||++|||||+..||+ +.|+++|+.|++++++++
T Consensus 350 ~~~~~l~~~l~~~~~~~pl~~--l~~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~e~F~~~Lr~Yl~~~~~~~-- 425 (632)
T 2xq0_A 350 IGWSDLQNSIDSMKDPERFST--LVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKS-- 425 (632)
T ss_dssp HHHHHHHHHHHTCSSHHHHTS--SSCCCCSSSCGGGGCSSHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTEE--
T ss_pred HHHHHHHHHHHhcccCCCCcc--cccCCCCCCChHHhccchhhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhCcCC--
Confidence 1111110 000011112110 001121 23445678999999999999999999999 999999999999999985
Q ss_pred CCCCHHHHHHHHHHhcCCCcccHHH-HHHHhhcCCCccEEEEEE
Q 001905 476 RTLSTKEFRHFANKVGNLERPFLKE-FFPRWVGTCGCPVLRMGF 518 (997)
Q Consensus 476 ~~~st~~F~~~~e~v~~~~~~dL~~-f~~qWv~~~G~P~l~V~~ 518 (997)
+++++|++.++++++..+.+++. +|++|++++|+|. ++++
T Consensus 426 --~tt~Df~~~l~~~~~~~~~~l~~~~~~~W~~~~G~P~-~~~~ 466 (632)
T 2xq0_A 426 --LDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGMPP-RPHF 466 (632)
T ss_dssp --ECHHHHHHHHHHHCGGGHHHHHTSCHHHHHHCCSCCC-CCCC
T ss_pred --CCHHHHHHHHHHHhhhccccccHHHHHHHhcCCCCCC-CcCC
Confidence 79999999999886321246777 7999999999999 6543
No 11
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=99.89 E-value=1.6e-22 Score=242.53 Aligned_cols=313 Identities=10% Similarity=0.054 Sum_probs=189.9
Q ss_pred cceEEeecCCCCCeeEEEEEEEEeCC---eEEEEcCceeeeeeccCCCCceEEEEeccC---CCcceeeEEEEeccceee
Q 001905 186 ARCWFPCIDDTTQRCCYDLEFTVSQN---LIAVSAGSLLYQVLSKDDPPRKTYVYRLDV---PVSAKWITLAVAPFEVLP 259 (997)
Q Consensus 186 AR~wFPC~D~p~~katf~l~Itvp~~---~~avsnG~l~~~~~~~~~~~~kt~~F~~t~---p~s~yliafaVG~F~~~~ 259 (997)
..+.|.+++.- ...+.+++|+.|++ |.+.+..+..+. ...+..+ |.... -+-. -+.+|+|+..+
T Consensus 108 ~~~~fly~~g~-~~~p~~~~i~~P~~~~~W~vaT~L~~~~~----~~~~~~~--f~a~~yd~LvDs---Pv~~G~~~~~~ 177 (597)
T 4fgm_A 108 NTSLCLAVEGQ-TDLPCELHLHAPPEAPLWKVATGMPRKSG----QPHSWGC--FRADNYDALIDY---PFLIGDLTIEE 177 (597)
T ss_dssp HHHHCCEETTC-TTSCEEEEECCCTTCTTCEEEESSCBCSS----CTTSSEE--EEESSHHHHTTC---CEEEESCEEEE
T ss_pred hhhhheeccCc-cCCcEEEEEECCCCCCcceEEecCCccCC----CCCcceE--EEcCCHHHHhcc---hhcccCcEEEE
Confidence 34556666653 66789999999999 997766654321 1112233 33211 0110 14688998766
Q ss_pred cCC-CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCccEEEEC-CCCcccccccccchhhccccccccc-
Q 001905 260 DHH-QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMGIFSSQILYDE- 336 (997)
Q Consensus 260 ~~~-~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp-~~~~~~~~~~gagL~i~~~~lL~~~- 336 (997)
... +.++++...+......+..+..+++++++++++|| +|||++|.+++.+ +...++|++.++.+++++...+...
T Consensus 178 ~~~~g~p~~l~v~~~~~~d~~~~~~~~~~~~~~~~~~fG-~yP~~~Y~fl~~~~~~~~GgmEh~~st~l~~~~~~l~~~~ 256 (597)
T 4fgm_A 178 FIAHGIKHSLVLSGRHYADTSRITADLAKICETQISLFE-EAPFQSYTFLTMVVGNGFGGLEHRNSTALLCSRKDLISAH 256 (597)
T ss_dssp EEETTEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHT-SCSCSEEEEEEEEESSCCEEEECSSEEEEEEEGGGSCCTT
T ss_pred eccCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC-CCCCCceEEEEEccCCCCcccccCCceEEEeCchhccccc
Confidence 543 44555544433333457888899999999999999 9999999998643 1222344443333333332211110
Q ss_pred --ccchhhhhhHHHHHHHHHHhhhcccccCC-----------CCChhHHHHHHHHHHHHHHHHHHhCCcHHHHH--HHHH
Q 001905 337 --KVIDQAIDTSIKLSFALARQWFGVYITPE-----------LPNDEWLLDGLAGFLTDSFIKKFLGNNEARYR--RYKA 401 (997)
Q Consensus 337 --~~~d~~~~~~~~iaHElAHQWFG~lVt~~-----------~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~r~~--~~~~ 401 (997)
...+.......+++||++|||||+.|+|+ +|+++||+||||+|++.+++.+.-......|. ....
T Consensus 257 ~~~~~~~~~~~~~liaHE~~H~W~g~~i~p~~~~~~d~~~~~~~~~lWl~EG~t~Y~~~l~~~r~G~~~~~~~~~~l~~~ 336 (597)
T 4fgm_A 257 QYEMNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHTSGIIDEKRYLKLLGDT 336 (597)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHTTBTTTBCBGGGSSCCCSSCCCCSTHHHHTHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred cccchhhhhchhhhHhhhhheeecccccccccccccccccccccccchhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 01111122345899999999999888764 56899999999999999999765323322222 1111
Q ss_pred hhhhhhhccCCCccCC-CCC-ccccCCC-CccccccccchhhhHHHHHHHHHHHhch-----HHHHHHHHHHHHhhcCCC
Q 001905 402 NCAVCKADDSGATALS-SSA-SCKDLYG-TQCIGIFGKIRSCKSVAILQMLEKQMGS-----NFFRKILQNIISRAQGAS 473 (997)
Q Consensus 402 ~~~~~~~~~~~~~~l~-~~~-~~~~l~~-~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~-----e~F~~~L~~yl~~~~~~~ 473 (997)
...+.........++. ++. .....+. .+.......-.|.||++|++||+..|++ ++|+++|+.|+.++....
T Consensus 337 i~~~~~~~gr~~~sl~~ss~~aw~~~yr~~~n~~n~~~s~Y~KGalv~~~LD~~lR~~s~g~~sldd~mr~l~~~~~~~~ 416 (597)
T 4fgm_A 337 LSRVERGAGQYQQSVTESSFLAWTKFYQQNENAPNSIVSYYAKGALIALSLDLMLRLQSDHKLTLARVMKELWHEFGKTS 416 (597)
T ss_dssp HHHHHHSGGGGTCCHHHHHHTCCCCCTTCCTTHHHHCCCTTHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHTTTT
T ss_pred HHHhhcCCCccccChHHcCchhhhccccCCcccCCcccccchHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhCcCC
Confidence 1122110000001110 000 0000110 0000011123599999999999888854 589999999999886421
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcccHHHHHHHhhcCCCccEE
Q 001905 474 PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVL 514 (997)
Q Consensus 474 ~~~~~st~~F~~~~e~v~~~~~~dL~~f~~qWv~~~G~P~l 514 (997)
...++++|.+++++++ |.+|.+||++|+++++.|.+
T Consensus 417 --~~~t~~d~~~~~e~~s---G~dl~~ff~~~l~~t~~~p~ 452 (597)
T 4fgm_A 417 --IGTADDTVINWLNQYP---GIDISDFLKDALYNKESLSL 452 (597)
T ss_dssp --CCBCTTHHHHHHHTST---TCCCHHHHHHHHHSCSCCCC
T ss_pred --CCCCHHHHHHHHHHhc---CcCHHHHHHHHHhCCCCcch
Confidence 1478999999999987 56899999999999998654
No 12
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.84 E-value=0.012 Score=60.04 Aligned_cols=183 Identities=25% Similarity=0.222 Sum_probs=113.4
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001905 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (997)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (997)
...++..|+ |+|...|..|+..|..... ......|.+.|.|+ -..||..|+.+|+++..++ .+..|+++++
T Consensus 21 ~~~L~~~L~-~~~~~vR~~A~~~L~~~~~--~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~ 91 (211)
T 3ltm_A 21 VEMYIKNLQ-DDSYYVRRAAAYALGKIGD--ERAVEPLIKALKDE--DAWVRRAAADALGQIGDER----AVEPLIKALK 91 (211)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--CHHHHHHHHHHHHHHCCGG----GHHHHHHHTT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHH----HHHHHHHHHc
Confidence 345566664 8899999999999988653 24577888888875 6889999999999987643 3666766553
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhcc
Q 001905 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (997)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (997)
. + +..|+.+...+|+.+.+ +++...|+.+|+. .|...+...+.+|+.+
T Consensus 92 ~----~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d--------~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 92 D----E--------------DGWVRQSAAVALGQIGD------ERAVEPLIKALKD--------EDWFVRIAAAFALGEI 139 (211)
T ss_dssp C----S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--------SSHHHHHHHHHHHHHH
T ss_pred C----C--------------CHHHHHHHHHHHHHhCc------HHHHHHHHHHHhC--------CCHHHHHHHHHHHHHc
Confidence 2 1 13588888888888854 3567788888841 3556788888888876
Q ss_pred ccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCChHHHHHHHHH
Q 001905 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASR 896 (997)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~ 896 (997)
... .++..+.++++ +...-|-.+++++|.++. ..--.+.+..++ .. ....||.+|.+
T Consensus 140 ~~~--------~~~~~L~~~l~------d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l----~d-~~~~vr~~A~~ 196 (211)
T 3ltm_A 140 GDE--------RAVEPLIKALK------DEDGWVRQSAADALGEIG----GERVRAAMEKLA----ET-GTGFARKVAVN 196 (211)
T ss_dssp CCG--------GGHHHHHHHTT------CSSHHHHHHHHHHHHHHC----SHHHHHHHHHHH----HH-CCHHHHHHHHH
T ss_pred CCH--------HHHHHHHHHHc------CCCHHHHHHHHHHHHHhC----chhHHHHHHHHH----hC-CCHHHHHHHHH
Confidence 431 12333333332 223345566677766652 100111222222 11 22468888888
Q ss_pred Hhhcccc
Q 001905 897 ALLDLEF 903 (997)
Q Consensus 897 ~l~~~~~ 903 (997)
+|-.++.
T Consensus 197 aL~~~~~ 203 (211)
T 3ltm_A 197 YLETHKS 203 (211)
T ss_dssp HHHC---
T ss_pred HHHhcCC
Confidence 8877654
No 13
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.41 E-value=0.3 Score=51.99 Aligned_cols=214 Identities=14% Similarity=0.037 Sum_probs=134.0
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001905 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (997)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (997)
...++..| .|+|...|..|+.+|.+.. +..+...|.+.+.|+ -+.||..|+.+|+++...... ...++..+.
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~~~~---~~~l~~~L~ 96 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRG--GQDAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKKC---EDNVFNILN 96 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC--CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTTT---HHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccC--CchHHHHHHHHHcCC--CHHHHHHHHHHHHHhcccccc---chHHHHHHH
Confidence 34566666 4789999999999999864 345778899999886 568999999999998753221 333333332
Q ss_pred hcC-CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhc
Q 001905 737 SRR-FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGE 815 (997)
Q Consensus 737 ~~~-~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~ 815 (997)
+.. -++ +..|+.+...||+.+...+....+++...|+.+|+. .|..-+.+.+.+|+.
T Consensus 97 ~~~~~d~--------------~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d--------~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 97 NMALNDK--------------SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD--------KSTNVRRATAFAISV 154 (280)
T ss_dssp HHHHHCS--------------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC--------SCHHHHHHHHHHHHT
T ss_pred HHHhcCC--------------CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC--------CCHHHHHHHHHHHHh
Confidence 110 011 134889999999998755555567888888888852 356788999999997
Q ss_pred cccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCChHHHHHHHH
Q 001905 816 LEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEAS 895 (997)
Q Consensus 816 ~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~ 895 (997)
+... .++..+..+++ | -..-|-.+++.+|.+++. .+.--.+.+..++ . +.-..||.+|.
T Consensus 155 ~~~~--------~~~~~L~~~l~-d-----~~~~vr~~a~~aL~~~~~--~~~~~~~~L~~~l----~-d~~~~vR~~A~ 213 (280)
T 1oyz_A 155 INDK--------ATIPLLINLLK-D-----PNGDVRNWAAFAININKY--DNSDIRDCFVEML----Q-DKNEEVRIEAI 213 (280)
T ss_dssp C-----------CCHHHHHHHHT-C-----SSHHHHHHHHHHHHHHTC--CCHHHHHHHHHHT----T-CSCHHHHHHHH
T ss_pred cCCH--------HHHHHHHHHHc-C-----CCHHHHHHHHHHHHhhcc--CcHHHHHHHHHHh----c-CCCHHHHHHHH
Confidence 6432 12333333333 1 223356677777766520 0100112222222 2 22378999999
Q ss_pred HHhhccccccCChHHHHHHHHHHhccCccchh
Q 001905 896 RALLDLEFHCNGIDSALSLFIKSVEEEPSLRG 927 (997)
Q Consensus 896 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 927 (997)
++|-.++. ..++..++..+.. |.+|.
T Consensus 214 ~aL~~~~~-----~~~~~~L~~~l~d-~~vr~ 239 (280)
T 1oyz_A 214 IGLSYRKD-----KRVLSVLCDELKK-NTVYD 239 (280)
T ss_dssp HHHHHTTC-----GGGHHHHHHHHTS-SSCCH
T ss_pred HHHHHhCC-----HhhHHHHHHHhcC-ccHHH
Confidence 99988752 3556777776654 55654
No 14
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=96.23 E-value=0.071 Score=61.08 Aligned_cols=55 Identities=5% Similarity=-0.076 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHhhccccCcccHHHHHHHHHHHHHHHhcc---cccCCCCchhHHHHHH
Q 001905 798 NPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFD---RLMPSYNGILTISCIR 856 (997)
Q Consensus 798 N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d---~~~psy~~~vt~~~l~ 856 (997)
..+.|..-+..++..++.... ...++.+.+....++.=+ .+-|..+.+|.+++++
T Consensus 192 ~~~~~~~lR~~~l~~ac~~g~----~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~ 249 (419)
T 3rjo_A 192 GSVSERMLRSQLLLLACVHNY----QPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQ 249 (419)
T ss_dssp SCHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeC
Confidence 456777788888887765532 234555666666666433 3667777777766543
No 15
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.07 E-value=0.063 Score=54.17 Aligned_cols=182 Identities=24% Similarity=0.189 Sum_probs=118.1
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 001905 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (997)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (997)
.....-++-.|+|..-|..|+.+|..... ......|.+.|.|+ -..||..|+.+|+++..++ .+..|+++..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~~~~~~L~~~l~~~--~~~vr~~a~~~L~~~~~~~----~~~~L~~~l~ 86 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--ERAVEPLIKALKDE--DAWVRRAAADALGQIGDER----AVEPLIKALK 86 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTT
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHH----HHHHHHHHHc
Confidence 33344445578999999999999998653 24578888999876 5789999999999987653 3677776543
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhcc
Q 001905 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (997)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (997)
. + +..|+.+...+|+.+.+ +++...|+.+|+ | .|...+...+.+|+.+
T Consensus 87 d----~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~--d------~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 87 D----E--------------DGWVRQSAAVALGQIGD------ERAVEPLIKALK--D------EDWFVRIAAAFALGEI 134 (201)
T ss_dssp C----S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTT--C------SSHHHHHHHHHHHHHH
T ss_pred C----C--------------CHHHHHHHHHHHHHhCc------HHHHHHHHHHHc--C------CCHHHHHHHHHHHHHh
Confidence 1 1 13588899999998864 356777888884 1 2566888999999876
Q ss_pred ccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCChHHHHHHHHH
Q 001905 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASR 896 (997)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~ 896 (997)
... .++..+.++++ | | ..-|-.+++++|.+++ ..--.+.+..++ . +....||.+|.+
T Consensus 135 ~~~--------~~~~~L~~~l~-d---~--~~~vr~~A~~aL~~~~----~~~~~~~L~~~l----~-d~~~~vr~~A~~ 191 (201)
T 3ltj_A 135 GDE--------RAVEPLIKALK-D---E--DGWVRQSAADALGEIG----GERVRAAMEKLA----E-TGTGFARKVAVN 191 (201)
T ss_dssp TCG--------GGHHHHHHHTT-C---S--SHHHHHHHHHHHHHHC----SHHHHHHHHHHH----H-HCCHHHHHHHHH
T ss_pred CCH--------HHHHHHHHHHc-C---C--CHHHHHHHHHHHHHhC----chhHHHHHHHHH----h-CCCHHHHHHHHH
Confidence 431 23334444443 2 1 2346667777777652 111112222222 1 123578998888
Q ss_pred Hhhcc
Q 001905 897 ALLDL 901 (997)
Q Consensus 897 ~l~~~ 901 (997)
+|-.+
T Consensus 192 aL~~l 196 (201)
T 3ltj_A 192 YLETH 196 (201)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88765
No 16
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.96 E-value=0.022 Score=53.71 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=84.2
Q ss_pred cCchhHHHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHH
Q 001905 654 NQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVK 733 (997)
Q Consensus 654 ~qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~ 733 (997)
.+|....+.++-+|+|...|..|+.+|.+.... . +..|.+.|.|+ -+.||..|+.+|+++..+. .+..|++
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-~~~L~~~L~d~--~~~vR~~A~~aL~~~~~~~----a~~~L~~ 80 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE--A-FEPLLESLSNE--DWRIRGAAAWIIGNFQDER----AVEPLIK 80 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST--T-HHHHHHGGGCS--CHHHHHHHHHHHGGGCSHH----HHHHHHH
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--H-HHHHHHHHcCC--CHHHHHHHHHHHHhcCCHH----HHHHHHH
Confidence 344455555566788888899999999876443 2 47888888875 5899999999999988653 3777877
Q ss_pred HHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHh
Q 001905 734 FYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSV 813 (997)
Q Consensus 734 ~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al 813 (997)
..+. ++ ..|+.+...||+.+. .+++...|+.+|+ | +|...+.+.+.||
T Consensus 81 ~L~d----~~--------------~~VR~~A~~aL~~~~------~~~a~~~L~~~l~--d------~~~~vr~~A~~aL 128 (131)
T 1te4_A 81 LLED----DS--------------GFVRSGAARSLEQIG------GERVRAAMEKLAE--T------GTGFARKVAVNYL 128 (131)
T ss_dssp HHHH----CC--------------THHHHHHHHHHHHHC------SHHHHHHHHHHTT--S------CCTHHHHHHHHHG
T ss_pred HHcC----CC--------------HHHHHHHHHHHHHhC------cHHHHHHHHHHHh--C------CCHHHHHHHHHHH
Confidence 7763 11 158899999999886 3578888999985 2 2456788888888
Q ss_pred hc
Q 001905 814 GE 815 (997)
Q Consensus 814 ~~ 815 (997)
+.
T Consensus 129 ~~ 130 (131)
T 1te4_A 129 ET 130 (131)
T ss_dssp GG
T ss_pred Hh
Confidence 75
No 17
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.81 E-value=0.24 Score=49.78 Aligned_cols=147 Identities=25% Similarity=0.265 Sum_probs=103.2
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCC
Q 001905 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (997)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~ 740 (997)
+.++-.|+|...|..|+.+|..... ..+...|.+.|.|+ -..||..|+.+|+++..++ .+..|+++...
T Consensus 50 L~~~l~~~~~~vr~~a~~~L~~~~~--~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~d--- 118 (201)
T 3ltj_A 50 LIKALKDEDAWVRRAAADALGQIGD--ERAVEPLIKALKDE--DGWVRQSAAVALGQIGDER----AVEPLIKALKD--- 118 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTTC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHcC---
Confidence 3344468999999999999998653 34678899999885 6789999999999988654 36667665431
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCc
Q 001905 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQ 820 (997)
Q Consensus 741 ~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~ 820 (997)
+ +..|+.+...+++.+.+ +++...|+.+|+ | .|..-+...+.+|+.+..
T Consensus 119 -~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~--d------~~~~vr~~A~~aL~~~~~-- 167 (201)
T 3ltj_A 119 -E--------------DWFVRIAAAFALGEIGD------ERAVEPLIKALK--D------EDGWVRQSAADALGEIGG-- 167 (201)
T ss_dssp -S--------------SHHHHHHHHHHHHHHTC------GGGHHHHHHHTT--C------SSHHHHHHHHHHHHHHCS--
T ss_pred -C--------------CHHHHHHHHHHHHHhCC------HHHHHHHHHHHc--C------CCHHHHHHHHHHHHHhCc--
Confidence 1 13588999999999864 357778888886 2 356789999999998743
Q ss_pred ccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHH
Q 001905 821 QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQI 861 (997)
Q Consensus 821 ~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l 861 (997)
..++..+..+++= ..-.|-.+++++|.++
T Consensus 168 ------~~~~~~L~~~l~d------~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 168 ------ERVRAAMEKLAET------GTGFARKVAVNYLETH 196 (201)
T ss_dssp ------HHHHHHHHHHHHH------CCHHHHHHHHHHHHHC
T ss_pred ------hhHHHHHHHHHhC------CCHHHHHHHHHHHHHH
Confidence 1233444444421 1234666777777664
No 18
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.57 E-value=0.34 Score=49.04 Aligned_cols=149 Identities=25% Similarity=0.260 Sum_probs=104.6
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcC
Q 001905 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRR 739 (997)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~ 739 (997)
.+.++-.|+|...|..|+.+|..... ..+...|.+.|.|+ -..||..|+.+|+++..++ .++.|+++...
T Consensus 54 ~L~~~l~~~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~d-- 123 (211)
T 3ltm_A 54 PLIKALKDEDAWVRRAAADALGQIGD--ERAVEPLIKALKDE--DGWVRQSAAVALGQIGDER----AVEPLIKALKD-- 123 (211)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTTC--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHhC--
Confidence 33445568899999999999998753 34678899999886 4789999999999998754 36667665531
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccC
Q 001905 740 FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFG 819 (997)
Q Consensus 740 ~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~ 819 (997)
+ +..|+.+...+|+.+.+ +++...|+.+|+ | .|..-+.+.+.+|+.+..
T Consensus 124 --~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~--d------~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 124 --E--------------DWFVRIAAAFALGEIGD------ERAVEPLIKALK--D------EDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp --S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTT--C------SSHHHHHHHHHHHHHHCS-
T ss_pred --C--------------CHHHHHHHHHHHHHcCC------HHHHHHHHHHHc--C------CCHHHHHHHHHHHHHhCc-
Confidence 1 23589999999999864 357788888885 2 246788999999997743
Q ss_pred cccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHH
Q 001905 820 QQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (997)
Q Consensus 820 ~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~ 862 (997)
..++..+.++++ | + ..-|-.+++++|.++.
T Consensus 173 -------~~~~~~L~~~l~-d---~--~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 173 -------ERVRAAMEKLAE-T---G--TGFARKVAVNYLETHK 202 (211)
T ss_dssp -------HHHHHHHHHHHH-H---C--CHHHHHHHHHHHHC--
T ss_pred -------hhHHHHHHHHHh-C---C--CHHHHHHHHHHHHhcC
Confidence 234444555544 2 2 2346677778777653
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.40 E-value=1.3 Score=52.84 Aligned_cols=227 Identities=14% Similarity=0.140 Sum_probs=129.4
Q ss_pred HHHHcccCChHHHHHHHHHHHcC----CCCch--hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccc--c-----c
Q 001905 661 INQLEKDGDVVAQAQAIAALEAL----PHLSF--NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW--A-----G 727 (997)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~----~~~s~--~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~--~-----g 727 (997)
+.++..|++..-|..|+.+|.+. |..-. .....|.+.|.|+ -.+||..|+.+|..+....... . .
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADS--NPMVVANAVAALSEISESHPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence 45677899999999999888753 32211 2456788888876 4799999999999988654321 1 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHH
Q 001905 728 LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLA 807 (997)
Q Consensus 728 ~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a 807 (997)
+.+|++...+ | | =++|..|.++++.+... .+.++.+++-.++..-.+ +|.--+-
T Consensus 204 ~~~Ll~~l~~--~---------~-------~~~q~~il~~l~~l~~~---~~~~~~~~l~~l~~~l~~-----~~~~V~~ 257 (591)
T 2vgl_B 204 INKLLTALNE--C---------T-------EWGQIFILDCLSNYNPK---DDREAQSICERVTPRLSH-----ANSAVVL 257 (591)
T ss_dssp HHHHHHHHHH--C---------C-------HHHHHHHHHHHHTSCCC---SHHHHHHHHHHHTTCSCS-----STTHHHH
T ss_pred HHHHHHcCCC--C---------C-------chHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHcC-----CChHHHH
Confidence 4555555443 1 1 24677888888777532 344444433333322112 2235666
Q ss_pred HHHHHhhcccc----CcccHH-HHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccC
Q 001905 808 ALVQSVGELEF----GQQSIL-FLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFR 882 (997)
Q Consensus 808 ~li~al~~~~~----~~~~~~-~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 882 (997)
+.+.+++.+.. +.+... ...++..-+-.++ -+-. -|-..+|++|.++....-..+. ..+..++ .
T Consensus 258 ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~------~~d~-~vr~~aL~~l~~i~~~~p~~~~-~~~~~~~---~ 326 (591)
T 2vgl_B 258 SAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL------SGEP-EVQYVALRNINLIVQKRPEILK-QEIKVFF---V 326 (591)
T ss_dssp HHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT------TSCH-HHHHHHHHHHHHHHHHCCSTTT-TCTTTTS---C
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh------cCCc-cHHHHHHHHHHHHHHhChHHHH-HHHHhhe---e
Confidence 77777776532 111111 1122222222222 1333 4555677888877543222221 1111111 2
Q ss_pred CCCChHHHHHHHHHHhhccccccCChHHHHHHHHHHhcc-Cccchh
Q 001905 883 DFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRG 927 (997)
Q Consensus 883 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 927 (997)
..+....||.+|++.|..++- ..+...++.-+++++.. |+.+|.
T Consensus 327 ~~~d~~~Ir~~al~~L~~l~~-~~nv~~iv~~L~~~l~~~d~~~r~ 371 (591)
T 2vgl_B 327 KYNDPIYVKLEKLDIMIRLAS-QANIAQVLAELKEYATEVDVDFVR 371 (591)
T ss_dssp CTTSCHHHHHHHHHHHHHTCC-SSTHHHHHHHHHHHTTSSCHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHCC-hhhHHHHHHHHHHHHhcCCHHHHH
Confidence 223338899999999998763 45566778888887754 566665
No 20
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=94.04 E-value=0.19 Score=53.47 Aligned_cols=114 Identities=19% Similarity=0.144 Sum_probs=79.0
Q ss_pred HHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCC
Q 001905 663 QLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDE 742 (997)
Q Consensus 663 QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~ 742 (997)
++..|.|...|..|+.+|.........+...|.+.+.|+ -..||.+|+.+|+++..+. .++.|++..+. +
T Consensus 166 ~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~~~~----~~~~L~~~l~d----~ 235 (280)
T 1oyz_A 166 NLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRKDKR----VLSVLCDELKK----N 235 (280)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTTCGG----GHHHHHHHHTS----S
T ss_pred HHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCHh----hHHHHHHHhcC----c
Confidence 344678888888888888876433455677888888775 4778999999998887543 36677666642 1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhc
Q 001905 743 NIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGE 815 (997)
Q Consensus 743 ~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~ 815 (997)
+ |+.+...|++.+.+ +++...|.++|+.++ |.-|+..++++|..
T Consensus 236 ~----------------vr~~a~~aL~~i~~------~~~~~~L~~~l~~~~-------~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 236 T----------------VYDDIIEAAGELGD------KTLLPVLDTMLYKFD-------DNEIITSAIDKLKR 279 (280)
T ss_dssp S----------------CCHHHHHHHHHHCC------GGGHHHHHHHHTTSS-------CCHHHHHHHHHHTC
T ss_pred c----------------HHHHHHHHHHhcCc------hhhhHHHHHHHhcCC-------CcHHHHHHHHHhhc
Confidence 1 34666778887753 367788888887332 44678888877753
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=91.72 E-value=5.5 Score=47.29 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=121.1
Q ss_pred ccCChHHHHHHHHHHHcCCCCc--hhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCC
Q 001905 666 KDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDEN 743 (997)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s--~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~ 743 (997)
+|++..-|.-|+++|....... ..+...|.+.+.|+ -..||..||.||.++.....+-.--..++..+++...+++
T Consensus 96 ~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d 173 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSN 173 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSC
T ss_pred CCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCC
Confidence 4688888999999999864322 12334477888775 5789999999999987532221111235555565544443
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC-----hHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhcccc
Q 001905 744 IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (997)
Q Consensus 744 ~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~-----p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (997)
..|+.+-..|+..+...+... .+.+..-|+..|.. .|.|-...++++|+....
T Consensus 174 --------------~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~--------~~~~~q~~il~~l~~l~~ 231 (591)
T 2vgl_B 174 --------------PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE--------CTEWGQIFILDCLSNYNP 231 (591)
T ss_dssp --------------HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHTSCC
T ss_pred --------------hhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC--------CCchHHHHHHHHHHHhCC
Confidence 358888889999887654322 23445556666642 357788899999987653
Q ss_pred CcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCC--C---hh----hhhhhhcccCCCCChHH
Q 001905 819 GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI--S---LD----QVVKLIKPFRDFNTIWQ 889 (997)
Q Consensus 819 ~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~--~---~~----~~~~~~~~~~~~~~~~~ 889 (997)
. +......+++-+.. ++-+-+..|-.+|.+++..+. ..+ + +. .+...+..... .-..
T Consensus 232 ~--~~~~~~~~l~~l~~------~l~~~~~~V~~ea~~~i~~l~----~~~~~~~~~~~~~~~~~~~~L~~L~~--~d~~ 297 (591)
T 2vgl_B 232 K--DDREAQSICERVTP------RLSHANSAVVLSAVKVLMKFL----ELLPKDSDYYNMLLKKLAPPLVTLLS--GEPE 297 (591)
T ss_dssp C--SHHHHHHHHHHHTT------CSCSSTTHHHHHHHHHHHHSC----CSCCBTTBSHHHHHHHTHHHHHHHTT--SCHH
T ss_pred C--ChHHHHHHHHHHHH------HHcCCChHHHHHHHHHHHHHh----hccCCCHHHHHHHHHHHHHHHHHHhc--CCcc
Confidence 2 22233444444432 233455677788888888752 111 0 11 10000001112 2368
Q ss_pred HHHHHHHHhhccccc
Q 001905 890 VRVEASRALLDLEFH 904 (997)
Q Consensus 890 vr~~a~~~l~~~~~~ 904 (997)
||..|+++|..+...
T Consensus 298 vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 298 VQYVALRNINLIVQK 312 (591)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887543
No 22
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=91.45 E-value=2.2 Score=50.04 Aligned_cols=285 Identities=14% Similarity=0.093 Sum_probs=143.8
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCC-c----hhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHH
Q 001905 659 MWINQLEKDGDVVAQAQAIAALEALPHL-S----FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVK 733 (997)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~-s----~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~ 733 (997)
.++.+|.++.+...|..|+..|...... + ..+...|...+.|+ -..||..|+.+|+.++.....-.-...++.
T Consensus 129 ~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~ 206 (588)
T 1b3u_A 129 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDD--TPMVRRAAASKLGEFAKVLELDNVKSEIIP 206 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHTSCHHHHHHTHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhcHHhHHHHHHH
Confidence 3556677788888898888777653211 1 12344555666665 689999999999988743211111233444
Q ss_pred HHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH----HHHHHHHHHhhhcCCCCCCCChHHHHHHH
Q 001905 734 FYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR----EAVEFVLQLLKYNDNNGNPYSDVFWLAAL 809 (997)
Q Consensus 734 ~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~----~v~~fll~ll~~NdNs~N~ysD~~y~a~l 809 (997)
.+.+..-+++ -.|+++-..+++.+-..- .+. .+..+|..+++ | .|...+.+.
T Consensus 207 ~l~~~~~d~~--------------~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~~l~~~~~--d------~~~~vR~~a 262 (588)
T 1b3u_A 207 MFSNLASDEQ--------------DSVRLLAVEACVNIAQLL--PQEDLEALVMPTLRQAAE--D------KSWRVRYMV 262 (588)
T ss_dssp HHHHHHTCSC--------------HHHHTTHHHHHHHHHHHS--CHHHHHHHTHHHHHHHHT--C------SSHHHHHHH
T ss_pred HHHHHhcCCc--------------HHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHcc--C------CCHHHHHHH
Confidence 4443221211 247777777776654322 232 34444555552 1 134578888
Q ss_pred HHHhhccccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCC---C-hhhhhhhhcccCCCC
Q 001905 810 VQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI---S-LDQVVKLIKPFRDFN 885 (997)
Q Consensus 810 i~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~---~-~~~~~~~~~~~~~~~ 885 (997)
+++|+.+........+...++..+..+++ |. ..-|-.+|.+++.+++....... + .+.+...+..+.. +
T Consensus 263 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~-----~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~-d 335 (588)
T 1b3u_A 263 ADKFTELQKAVGPEITKTDLVPAFQNLMK-DC-----EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS-D 335 (588)
T ss_dssp HHTHHHHHHHHCHHHHHHTHHHHHHHHHT-CS-----SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT-C
T ss_pred HHHHHHHHHHhCcccchhHHHHHHHHHhC-CC-----cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc-C
Confidence 88888764311111233445555555554 21 23456677788877753221110 0 1222222222222 3
Q ss_pred ChHHHHHHHHHHhhccccccCCh---HHHHHHHHHHhcc-CccchhhhHHHHhhhccchhccCCCCCCCcCcHHHHHHHH
Q 001905 886 TIWQVRVEASRALLDLEFHCNGI---DSALSLFIKSVEE-EPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLN 961 (997)
Q Consensus 886 ~~~~vr~~a~~~l~~~~~~~~~~---~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (997)
..+.||.+|.++|-.+....+.. ...+..++..+.. ++.+|... +...-.++..- +.+ . -.+.++..|.
T Consensus 336 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a--~~~l~~l~~~~-~~~---~-~~~~~lp~l~ 408 (588)
T 1b3u_A 336 ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI--ISNLDCVNEVI-GIR---Q-LSQSLLPAIV 408 (588)
T ss_dssp SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHH--HTTCHHHHHHS-CHH---H-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHHHHhc-CHH---H-HHHHHHHHHH
Confidence 34789999999998875322211 1233445555532 34444421 11111111110 100 0 1233444444
Q ss_pred HHhccccccchhhhhhHHHHHHHHh
Q 001905 962 LLESRIAFNNVFLRHHLFGILQILA 986 (997)
Q Consensus 962 ~~~~~~~~~~~~lr~~~~~~~~~l~ 986 (997)
.+.+ ..||+.|..++..+..|.
T Consensus 409 ~~~~---d~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 409 ELAE---DAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp HHHT---CSSHHHHHHHHHHHHHHH
T ss_pred HHhc---CCCchHHHHHHHHHHHHH
Confidence 4443 246788887777766554
No 23
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.23 E-value=3.3 Score=49.59 Aligned_cols=246 Identities=13% Similarity=0.132 Sum_probs=137.2
Q ss_pred hHHHHHHcccCChHHHHHHHHHHHcC----CCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc----cccc-H
Q 001905 658 QMWINQLEKDGDVVAQAQAIAALEAL----PHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET----DWAG-L 728 (997)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~----~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~----~~~g-~ 728 (997)
..-+.++..|++..-|-.|+.++.+. |..-......|.+.|.|+ -.+|+..|+.+|..+..... .+.. .
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v 221 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEK--NHGVLHTSVVLLTEMCERSPDMLAHFRKLV 221 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCSHHHHHHHHHTTH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 44556667789999999998888653 322122344566667764 47999999999998875432 1222 2
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH---HHHHHHHHHhhhcCCCCCCCChHHH
Q 001905 729 LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR---EAVEFVLQLLKYNDNNGNPYSDVFW 805 (997)
Q Consensus 729 ~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~---~v~~fll~ll~~NdNs~N~ysD~~y 805 (997)
+.|++..+.. +. ++.+..-++.....=++|..+..+++.+-.. .|. .+.++|..+++-.+.+.| ++.-.
T Consensus 222 ~~l~~~L~~~-~~--~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~---~~~~~~~~~~~L~~l~~~~~~~~~--~~~aV 293 (618)
T 1w63_A 222 PQLVRILKNL-IM--SGYSPEHDVSGISDPFLQVRILRLLRILGRN---DDDSSEAMNDILAQVATNTETSKN--VGNAI 293 (618)
T ss_dssp HHHHHHHHHH-HH--SCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT---CHHHHHTTHHHHHHHHHTSCCSST--HHHHH
T ss_pred HHHHHHHHHH-Hc--CCCCccccccCCCCChHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHhccccccc--hHHHH
Confidence 3444444431 00 0111112222223346777788888776432 243 345578888775555555 34456
Q ss_pred HHHHHHHhhccccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCC-C-hhhhhhhhcccCC
Q 001905 806 LAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI-S-LDQVVKLIKPFRD 883 (997)
Q Consensus 806 ~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~ 883 (997)
+-+.++++..+... ......++.-+-+++. -+. .-|--.+|.+|.+++...-..+ + .+.++..+
T Consensus 294 ~~ea~~~i~~l~~~---~~l~~~a~~~L~~~L~-----~~d-~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l----- 359 (618)
T 1w63_A 294 LYETVLTIMDIKSE---SGLRVLAINILGRFLL-----NND-KNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCL----- 359 (618)
T ss_dssp HHHHHHHHHHSCCC---HHHHHHHHHHHHHHHT-----CSS-TTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGG-----
T ss_pred HHHHHHHHHhcCCC---HHHHHHHHHHHHHHHh-----CCC-CchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHc-----
Confidence 66777777665332 2223334444555432 233 3444556777777754221111 1 11222211
Q ss_pred CCChHHHHHHHHHHhhccccccCChHHHHHHHHHHhcc-Cccchhh
Q 001905 884 FNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRGQ 928 (997)
Q Consensus 884 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 928 (997)
.+....||..|+++|..+.-. ...+.++.-++.++.. |+.+|..
T Consensus 360 ~d~d~~Ir~~alelL~~l~~~-~nv~~iv~eL~~~l~~~d~e~r~~ 404 (618)
T 1w63_A 360 KDLDVSIKRRAMELSFALVNG-NNIRGMMKELLYFLDSCEPEFKAD 404 (618)
T ss_dssp GSSCHHHHHHHHHHHHHHCCS-SSTHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHccc-ccHHHHHHHHHHHHHhCCHHHHHH
Confidence 123378999999999998653 3356778888887754 5666653
No 24
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=89.40 E-value=3.4 Score=48.34 Aligned_cols=213 Identities=15% Similarity=0.089 Sum_probs=118.0
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCC------chhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccc----ccHH
Q 001905 660 WINQLEKDGDVVAQAQAIAALEALPHL------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW----AGLL 729 (997)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~------s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~----~g~~ 729 (997)
.+.++..|++-..|..|++.|...-.. ...+...|.+.+.|+ -+.||..|+.+|+.+......- .-+.
T Consensus 246 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 345666788888888888887653110 012455677777775 6789999999999887542211 1133
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC--hHHHHHHHHHHhhhcCCCCCCCChHHHHH
Q 001905 730 HLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS--PREAVEFVLQLLKYNDNNGNPYSDVFWLA 807 (997)
Q Consensus 730 ~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~--p~~v~~fll~ll~~NdNs~N~ysD~~y~a 807 (997)
.++..+.+..-++ +..|+++...+++.+-..-|.. .+.+...|+.+|+ | .|...+.
T Consensus 324 ~l~p~l~~~l~d~--------------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~--d------~~~~Vr~ 381 (588)
T 1b3u_A 324 QILPCIKELVSDA--------------NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK--D------ECPEVRL 381 (588)
T ss_dssp THHHHHHHHHTCS--------------CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT--C------SCHHHHH
T ss_pred HHHHHHHHHhcCC--------------CHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC--C------CchHHHH
Confidence 4444444322111 2357888777777764332321 2345666777775 2 2355778
Q ss_pred HHHHHhhccccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCCh
Q 001905 808 ALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTI 887 (997)
Q Consensus 808 ~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (997)
+.+++|+.+.-.-........++..|..+++-+.| -+-.++++++..++..+....-.+.+...+..... +.-
T Consensus 382 ~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~------~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~ 454 (588)
T 1b3u_A 382 NIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKW------RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-DHV 454 (588)
T ss_dssp HHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSH------HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-CSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc-CCc
Confidence 88888876532111112334566666655532222 34455666666665443222111222222222222 334
Q ss_pred HHHHHHHHHHhhcccc
Q 001905 888 WQVRVEASRALLDLEF 903 (997)
Q Consensus 888 ~~vr~~a~~~l~~~~~ 903 (997)
..||.+|.++|-.+..
T Consensus 455 ~~Vr~~a~~~l~~l~~ 470 (588)
T 1b3u_A 455 YAIREAATSNLKKLVE 470 (588)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999987743
No 25
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=89.34 E-value=0.78 Score=42.78 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=62.4
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCC
Q 001905 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (997)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~ 740 (997)
+.++-.|+|...|..|+.+|..... ..++..|.+.|.|+ -+.||.+|+.+|+++..++ .++.|++..+
T Consensus 47 L~~~L~d~~~~vR~~A~~aL~~~~~--~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~~~----a~~~L~~~l~---- 114 (131)
T 1te4_A 47 LLESLSNEDWRIRGAAAWIIGNFQD--ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGGER----VRAAMEKLAE---- 114 (131)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGGGCS--HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCSHH----HHHHHHHHTT----
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHh----
Confidence 3345568999999999999998753 35678899999875 6899999999999987543 3566665543
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhc
Q 001905 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMV 771 (997)
Q Consensus 741 ~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~ 771 (997)
+++ ..|+.+...||+.|
T Consensus 115 d~~--------------~~vr~~A~~aL~~i 131 (131)
T 1te4_A 115 TGT--------------GFARKVAVNYLETH 131 (131)
T ss_dssp SCC--------------THHHHHHHHHGGGC
T ss_pred CCC--------------HHHHHHHHHHHHhC
Confidence 111 24778777777654
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=87.92 E-value=4.1 Score=41.58 Aligned_cols=167 Identities=24% Similarity=0.271 Sum_probs=102.6
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------c
Q 001905 661 INQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-------D 724 (997)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~-------~ 724 (997)
+..| ++.|...|.+|+..|......+. .++..|.+.|.++. -.||..|+.+|+.++.... .
T Consensus 8 ~~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 8 VKLL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3444 45678889999998876532222 24567888888764 8999999999999886421 1
Q ss_pred cccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH-----HHHHHHHHHhhhcCCCCCC
Q 001905 725 WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYNDNNGNP 799 (997)
Q Consensus 725 ~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~-----~v~~fll~ll~~NdNs~N~ 799 (997)
..|++.|+++.++ + +--++.....+|+.+-..+...-. .+...|+++|+.
T Consensus 85 ~~~i~~l~~ll~~----~--------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~------- 139 (252)
T 4hxt_A 85 AGGVEVLVKLLTS----T--------------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS------- 139 (252)
T ss_dssp TTHHHHHHHHTTC----S--------------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-------
T ss_pred CCCHHHHHHHHcC----C--------------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-------
Confidence 1356777666542 1 124777777888777532211111 356778888873
Q ss_pred CChHHHHHHHHHHhhccccCcccH--HHH-HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHH
Q 001905 800 YSDVFWLAALVQSVGELEFGQQSI--LFL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (997)
Q Consensus 800 ysD~~y~a~li~al~~~~~~~~~~--~~~-~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~ 862 (997)
+|.-.+...+.+|+++....+.. .+. ..++..+-.+++ +-..-+...|+.+|.+++
T Consensus 140 -~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 140 -TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT------STDSEVQKEAARALANIA 198 (252)
T ss_dssp -SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC------CCCHHHHHHHHHHHHHHH
Confidence 23557888889998876543211 111 225566666655 223455666777777764
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=87.79 E-value=4.3 Score=47.14 Aligned_cols=226 Identities=20% Similarity=0.188 Sum_probs=127.8
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCC----Cch------hHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccc--
Q 001905 657 VQMWINQLEKDGDVVAQAQAIAALEALPH----LSF------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD-- 724 (997)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~----~s~------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~-- 724 (997)
--.++..|. +.|...|.+|+.+|.+.-+ ... .++..|.+.|.+.. ...||.+||.+|++++.....
T Consensus 76 l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED-FPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHH
Confidence 345666674 5689999999999875411 110 13556788887642 479999999999998864211
Q ss_pred -----cccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH-----HHHHHHHHHhhhcC
Q 001905 725 -----WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYND 794 (997)
Q Consensus 725 -----~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~-----~v~~fll~ll~~Nd 794 (997)
..+++.|+++.++ + | --|+.....+|+.+-..+..+.. .+...|+.+|+.
T Consensus 154 ~~~~~~g~i~~L~~lL~~----~-------~-------~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~-- 213 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGS----S-------S-------DDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE-- 213 (528)
T ss_dssp HHHHHTTHHHHHHHHTTC----S-------C-------HHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT--
T ss_pred HHHHhCCcHHHHHHHhcC----C-------C-------HHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc--
Confidence 1356777766542 1 1 14777777888777422111111 145567777741
Q ss_pred CCCCCCChHHHHHHHHHHhhccccC--cccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHH--------
Q 001905 795 NNGNPYSDVFWLAALVQSVGELEFG--QQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK-------- 864 (997)
Q Consensus 795 Ns~N~ysD~~y~a~li~al~~~~~~--~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~-------- 864 (997)
-.|.-.+...+.+|+++... .........++..+.++++-+ ..-|-..|+.+|..|+..
T Consensus 214 -----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~ 282 (528)
T 4b8j_A 214 -----HTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN------DEEVLTDACWALSYLSDGTNDKIQAV 282 (528)
T ss_dssp -----TCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC------CHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 13556777888888876443 122233445677777666432 233444566666665310
Q ss_pred -hcCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhccccccCCh------HHHHHHHHHHhccC
Q 001905 865 -LSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEEE 922 (997)
Q Consensus 865 -~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~------~~~l~~~~~~~~~~ 922 (997)
-.|.+| .+..++ ... -..||..|+.+|-.+....... ..++..++..+...
T Consensus 283 ~~~g~v~--~Lv~lL----~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 283 IEAGVCP--RLVELL----LHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp HHTTCHH--HHHHHT----TCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred HHcCHHH--HHHHHH----cCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 012222 222332 112 2689999999998875421100 12356666666543
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=87.62 E-value=5.2 Score=44.97 Aligned_cols=205 Identities=17% Similarity=0.202 Sum_probs=120.4
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCc---------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------
Q 001905 659 MWINQLEKDGDVVAQAQAIAALEALPHLS---------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (997)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s---------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------ 723 (997)
..+..|+.+.+...|.+|+..|......+ ..++..|.+.|.++ -..||..|+.+|+.++....
T Consensus 68 ~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~ 145 (450)
T 2jdq_A 68 RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYV 145 (450)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 34455555448899999999887643211 12456788888775 67999999999999886431
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC-----hHHHHHHHHHHhhhcCCCC
Q 001905 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNG 797 (997)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~-----p~~v~~fll~ll~~NdNs~ 797 (997)
...+++.|+++.++ ++ +--+++....+++.+-...+.. -..+...|+++|+.
T Consensus 146 ~~~~~i~~L~~~l~~---~~--------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~----- 203 (450)
T 2jdq_A 146 LDCNILPPLLQLFSK---QN--------------RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV----- 203 (450)
T ss_dssp HHTTCHHHHHHHTTS---CC--------------CHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC-----
T ss_pred HHCCCHHHHHHHhcC---CC--------------CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc-----
Confidence 12356777766542 00 1236777778887765332111 14577888898872
Q ss_pred CCCChHHHHHHHHHHhhccccCccc-HH-HH-HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHH---------h
Q 001905 798 NPYSDVFWLAALVQSVGELEFGQQS-IL-FL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---------L 865 (997)
Q Consensus 798 N~ysD~~y~a~li~al~~~~~~~~~-~~-~~-~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~---------~ 865 (997)
.|.--+...+.+|+++...... .. .. ..++..+-.+++- -..-+...|+.+|..++.. -
T Consensus 204 ---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 274 (450)
T 2jdq_A 204 ---SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH------NDYKVVSPALRAVGNIVTGDDIQTQVILN 274 (450)
T ss_dssp ---CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC------CchhHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 2455677788888876543211 11 11 1255555555542 1234556677777776421 0
Q ss_pred cCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhcccc
Q 001905 866 SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (997)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (997)
.|.+ +.+..++ .. .-..+|.+|..+|-.+..
T Consensus 275 ~~~l--~~L~~ll----~~-~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 275 CSAL--QSLLHLL----SS-PKESIKKEACWTISNITA 305 (450)
T ss_dssp TTHH--HHHHHHT----TC-SSHHHHHHHHHHHHHHTT
T ss_pred CccH--HHHHHHH----cC-CCHHHHHHHHHHHHHHHc
Confidence 1111 1222222 22 236899999999988753
No 29
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=87.20 E-value=15 Score=42.57 Aligned_cols=209 Identities=14% Similarity=0.183 Sum_probs=114.7
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------
Q 001905 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (997)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------ 723 (997)
.++.-|+.+.+..-|.+|..+|.....++.. ++..|.+.|.++ .-.||..|+.+|++++....
T Consensus 104 ~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v 181 (510)
T 3ul1_B 104 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLV 181 (510)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3455566667788999999999875333322 345678888764 57899999999999985421
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcc-ccCCCCh----HHHHHHHHHHhhhcCCCC
Q 001905 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR-AADNKSP----REAVEFVLQLLKYNDNNG 797 (997)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r-~~~g~~p----~~v~~fll~ll~~NdNs~ 797 (997)
...|+..|+...+.. +.+....- +++....+++.+- +.+...+ ..+...|..+|+.
T Consensus 182 ~~~G~i~~Ll~lL~~~------------~~~~~~~~-~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~----- 243 (510)
T 3ul1_B 182 IKHGAIDPLLALLAVP------------DLSTLACG-YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH----- 243 (510)
T ss_dssp HHTTCHHHHHHHTCSS------------CGGGSCHH-HHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC-----
T ss_pred HHcCChHHHHHHHHhc------------cchhhhHH-HHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc-----
Confidence 223567777665421 11111112 3444555665543 3323222 2455667777763
Q ss_pred CCCChHHHHHHHHHHhhccccCcccH-HHH--HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHH---------Hh
Q 001905 798 NPYSDVFWLAALVQSVGELEFGQQSI-LFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL---------KL 865 (997)
Q Consensus 798 N~ysD~~y~a~li~al~~~~~~~~~~-~~~--~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~---------~~ 865 (997)
.|.--+...+.+|+.+..+.... ..+ ..++.-+-.+++- -..-+-..|+.+|..++. --
T Consensus 244 ---~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~al~aL~nl~~~~~~~~~~i~~ 314 (510)
T 3ul1_B 244 ---NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA------TELPIVTPALRAIGNIVTGTDEQTQKVID 314 (510)
T ss_dssp ---SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC------CChhhhhHHHHHHHHhhcCCHHHHHHHhh
Confidence 23446777778887765432211 011 1133444444432 223345566677766531 01
Q ss_pred cCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhcccc
Q 001905 866 SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (997)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (997)
.|.++. + ..... ..-..+|.+|..+|-.+..
T Consensus 315 ~g~l~~--L----~~LL~-~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 315 AGALAV--F----PSLLT-NPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp TTGGGG--C----C-CTT-CSSHHHHHHHHHHHHHHTT
T ss_pred ccchHH--H----HHHhc-CCCHHHHHHHHHHHHHHHc
Confidence 222221 1 12222 2236799999999988764
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=85.36 E-value=5.2 Score=46.49 Aligned_cols=284 Identities=15% Similarity=0.135 Sum_probs=150.8
Q ss_pred hHHHHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-----
Q 001905 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET----- 723 (997)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~----- 723 (997)
-..+..|..+.+...|.+|+.+|......+.. ++..|.+.|.++ .-.||..|+.+|++++....
T Consensus 120 ~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 120 PRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp HHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHH
Confidence 34455565444488899999998865433221 456688888774 57999999999999875422
Q ss_pred --ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCCh----HHHHHHHHHHhhhcCCCC
Q 001905 724 --DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP----REAVEFVLQLLKYNDNNG 797 (997)
Q Consensus 724 --~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p----~~v~~fll~ll~~NdNs~ 797 (997)
...+++.|++..++ . . .--+++....+|+.+=....... ..+...|+.+|+.
T Consensus 198 i~~~g~l~~Ll~lL~~------~--------~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~----- 255 (528)
T 4b8j_A 198 VLANGALLPLLAQLNE------H--------T---KLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS----- 255 (528)
T ss_dssp HHHTTCHHHHHHTCCT------T--------C---CHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-----
T ss_pred HHHCCcHHHHHHHHhc------C--------C---CHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-----
Confidence 11246666654421 0 0 12367777788877754322222 2367788888853
Q ss_pred CCCChHHHHHHHHHHhhccccCcccH--HHHH-HHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHH---------h
Q 001905 798 NPYSDVFWLAALVQSVGELEFGQQSI--LFLS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---------L 865 (997)
Q Consensus 798 N~ysD~~y~a~li~al~~~~~~~~~~--~~~~-~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~---------~ 865 (997)
.|.-.+...+.+|+++..+.... ...+ .++..+-.++.-. ..-|...|+.+|..++.. -
T Consensus 256 ---~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~------~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 326 (528)
T 4b8j_A 256 ---NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP------SPSVLIPALRTVGNIVTGDDAQTQCIID 326 (528)
T ss_dssp ---CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS------CHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC------ChhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 24667888889998876542211 1111 2444555555432 335666777888776420 0
Q ss_pred cCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhccccccCCh-H-----HHHHHHHHHhcc-CccchhhhHHHHhhhcc
Q 001905 866 SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI-D-----SALSLFIKSVEE-EPSLRGQVKLGIHAMRI 938 (997)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~-~-----~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 938 (997)
.|.+ ..+..++ ..+....||.+|..+|-.+....... . .++..++..+.. ++.++... ..++..
T Consensus 327 ~~~l--~~L~~lL----~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a---~~aL~n 397 (528)
T 4b8j_A 327 HQAL--PCLLSLL----TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA---AWAISN 397 (528)
T ss_dssp TTHH--HHHHHHH----HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH---HHHHHH
T ss_pred hhhH--HHHHHHH----cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH---HHHHHH
Confidence 1111 1222332 22224689999999998875421100 0 123445555543 44444321 222222
Q ss_pred chhccCCCCCCCcCcHHHHHHHHHHhccccccchhhhhhHHHHHHHHh
Q 001905 939 CQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILA 986 (997)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~ 986 (997)
+...+..+....+....++..|..++. ..|..+|..+...+..|.
T Consensus 398 l~~~~~~~~~~~l~~~~~i~~L~~lL~---~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 398 ATSGGSHDQIKYLVSEGCIKPLCDLLI---CPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHHSCHHHHHHHHHTTCHHHHHHGGG---CSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHH
Confidence 222111111111212223444444443 256777777776666553
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=85.33 E-value=2.1 Score=50.05 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=118.6
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------
Q 001905 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (997)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------- 723 (997)
++.-|..+.+...|.+|+.+|......+. .++..|.+.|.++ -..||..|+.+|+.++....
T Consensus 135 Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~ 212 (530)
T 1wa5_B 135 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVL 212 (530)
T ss_dssp HHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHH
Confidence 34444433388899999999987644321 1345677778764 67899999999999876421
Q ss_pred ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccC-CCCh----HHHHHHHHHHhhhcCCCCC
Q 001905 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD-NKSP----REAVEFVLQLLKYNDNNGN 798 (997)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~-g~~p----~~v~~fll~ll~~NdNs~N 798 (997)
...+++.|++..+. ++ --+++....+|+.+-... .... ..+...|+.+|+.
T Consensus 213 ~~~~l~~L~~ll~~----~~--------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~------ 268 (530)
T 1wa5_B 213 QCNAMEPILGLFNS----NK--------------PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS------ 268 (530)
T ss_dssp HTTCHHHHHHGGGS----CC--------------HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC------
T ss_pred HcCcHHHHHHHhcc----CC--------------HHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC------
Confidence 12356777766653 10 136777778887765332 2222 2456778888863
Q ss_pred CCChHHHHHHHHHHhhccccCccc--HHHHH-HHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHH---------hc
Q 001905 799 PYSDVFWLAALVQSVGELEFGQQS--ILFLS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---------LS 866 (997)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~--~~~~~-~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~---------~~ 866 (997)
.|.-.+...+.+|+++...... ....+ .++..|-.+++- -..-|...|+.+|..++.. -.
T Consensus 269 --~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 340 (530)
T 1wa5_B 269 --MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH------ESTLVQTPALRAVGNIVTGNDLQTQVVINA 340 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC------CChhhHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 2456777888888876543211 01111 244445555432 2334556677777776420 01
Q ss_pred CCCChhhhhhhhcccCCCCChHHHHHHHHHHhhcccc
Q 001905 867 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (997)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (997)
|.+| .+..++ ..+ -..+|.+|..+|-.+..
T Consensus 341 ~~l~--~L~~lL----~~~-~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 341 GVLP--ALRLLL----SSP-KENIKKEACWTISNITA 370 (530)
T ss_dssp THHH--HHHHHT----TCS-CHHHHHHHHHHHHHHTT
T ss_pred chHH--HHHHHH----cCC-CHHHHHHHHHHHHHHHc
Confidence 2222 122222 222 37899999999998764
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.18 E-value=7.7 Score=46.37 Aligned_cols=226 Identities=12% Similarity=0.043 Sum_probs=126.3
Q ss_pred ccCChHHHHHHHHHHHcCCCCchh----HHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCC
Q 001905 666 KDGDVVAQAQAIAALEALPHLSFN----VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFD 741 (997)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s~~----~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~ 741 (997)
.++|-.-|+-|+.+|...-...+. ....+..++.|+. --||..|...|.++.++.+--.=+..|++++.+ .
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d--~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~--~- 397 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLD--VSIKRRAMELSFALVNGNNIRGMMKELLYFLDS--C- 397 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSC--HHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH--C-
T ss_pred hCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCC--hhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh--C-
Confidence 457777788888877654211111 1235666777764 459999999999999875411114455555443 0
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCcc
Q 001905 742 ENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQ 821 (997)
Q Consensus 742 ~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~ 821 (997)
+.-++..+..+|+.+=.........+...|+++|+..+ +... ..++.++..+....+
T Consensus 398 ---------------d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~---~~v~-----~~~~~~l~~ii~~~p 454 (618)
T 1w63_A 398 ---------------EPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG---SYVR-----DDAVPNLIQLITNSV 454 (618)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG---GGSC-----SSHHHHHHHHHHHSC
T ss_pred ---------------CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc---chhH-----HHHHHHHHHHHhcCh
Confidence 13466778888888865544556778888999998543 2222 223333333211111
Q ss_pred cHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcC----------CCCh---hhhhhhhcccCCCCChH
Q 001905 822 SILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG----------FISL---DQVVKLIKPFRDFNTIW 888 (997)
Q Consensus 822 ~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~----------~~~~---~~~~~~~~~~~~~~~~~ 888 (997)
+ .-+.++..+-.++.-|. .+..++ .+++-.+.+.+..... ..|. +.+..++..| ....
T Consensus 455 ~--l~~~~v~~L~~~l~~~~---~~~~~~-~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~ 525 (618)
T 1w63_A 455 E--MHAYTVQRLYKAILGDY---SQQPLV-QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN---MSTS 525 (618)
T ss_dssp S--THHHHHHHHHHHHHHCC---SCSHHH-HHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST---TCCH
T ss_pred h--HHHHHHHHHHHHHhccc---ccHHHH-HHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc---CCCH
Confidence 1 12335555555554432 234444 3567777766543321 1111 1122222222 2347
Q ss_pred HHHHHHHHHhhccccccCChHHHHHHHHHHhccC--ccchhh
Q 001905 889 QVRVEASRALLDLEFHCNGIDSALSLFIKSVEEE--PSLRGQ 928 (997)
Q Consensus 889 ~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~ 928 (997)
.||..++.+++.+........+.+.-+|.....| +.+|.|
T Consensus 526 ~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~~d~evrdR 567 (618)
T 1w63_A 526 VTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQR 567 (618)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcCCCCHHHHHH
Confidence 8999999999998877665555566566555444 456654
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=84.53 E-value=12 Score=43.26 Aligned_cols=224 Identities=17% Similarity=0.149 Sum_probs=130.3
Q ss_pred hhHHHHHHcccCChHHHHHHHHHHHcCCC----Cc------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc---
Q 001905 657 VQMWINQLEKDGDVVAQAQAIAALEALPH----LS------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET--- 723 (997)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~----~s------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~--- 723 (997)
-..++..|+ +.|...|..|+..|.+.-+ .. ..++..|.+.|.++ .-..||.+||.+|+.++....
T Consensus 89 i~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHH
Confidence 444556665 5688999999999986411 11 12455677778664 257899999999999886321
Q ss_pred ----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH-----HHHHHHHHHhhhcC
Q 001905 724 ----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYND 794 (997)
Q Consensus 724 ----~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~-----~v~~fll~ll~~Nd 794 (997)
.-.+++.|+++.++. +--|+.....+|+.+-..+..+.. .+...|+.+|+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~------------------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-- 226 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTG------------------SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-- 226 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS--
T ss_pred HHHHHCCCHHHHHHHHcCC------------------CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc--
Confidence 124578888888751 113677777777776422111111 246678888863
Q ss_pred CCCCCCChHHHHHHHHHHhhccccCc---ccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHH-------
Q 001905 795 NNGNPYSDVFWLAALVQSVGELEFGQ---QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK------- 864 (997)
Q Consensus 795 Ns~N~ysD~~y~a~li~al~~~~~~~---~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~------- 864 (997)
.|.-.+...+.+|+++..+. ........++..+.+++.-+ ..-|-..++.+|..|+..
T Consensus 227 ------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~L~~~~~~~~~~ 294 (530)
T 1wa5_B 227 ------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM------DTETLVDACWAISYLSDGPQEAIQA 294 (530)
T ss_dssp ------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC------CHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 35567778888888765332 12223345666666666422 223444555666665421
Q ss_pred --hcCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhccccccCCh------HHHHHHHHHHhcc
Q 001905 865 --LSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEE 921 (997)
Q Consensus 865 --~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~------~~~l~~~~~~~~~ 921 (997)
-.|.+| .+..++. ..-..||..|+.+|-.+....... ..++..++..+..
T Consensus 295 ~~~~~~v~--~Lv~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 295 VIDVRIPK--RLVELLS-----HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp HHHTTCHH--HHHHGGG-----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHhcCcHH--HHHHHHC-----CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC
Confidence 013222 2333332 123789999999998875422110 0245566666654
No 34
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=84.36 E-value=6.4 Score=40.37 Aligned_cols=174 Identities=21% Similarity=0.219 Sum_probs=106.1
Q ss_pred CchhHHHHHHcccCChHHHHHHHHHHHcCCCC---------chhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc--
Q 001905 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHL---------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 723 (997)
Q Consensus 655 qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~---------s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~-- 723 (997)
.++|.+...+-++.|...|.+|+..|...-.. ...++..|.+.|.++. ..||.+|+.+|+.++....
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHH
Confidence 34566777767789999999999988532000 0014456888888764 8999999999999886321
Q ss_pred -----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC-----hHHHHHHHHHHhhhc
Q 001905 724 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYN 793 (997)
Q Consensus 724 -----~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~-----p~~v~~fll~ll~~N 793 (997)
...|++.|++..++ +| --+++....+|+.+-...... -..+...|+++|+.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~-----------~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~- 149 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSS-----------PN-------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS- 149 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGC-----------SC-------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-
T ss_pred HHHHHHcCCHHHHHHHHcC-----------CC-------HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-
Confidence 12356777766653 11 147777778888774322111 01266788888862
Q ss_pred CCCCCCCChHHHHHHHHHHhhccccCcccH-H-HH-HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHH
Q 001905 794 DNNGNPYSDVFWLAALVQSVGELEFGQQSI-L-FL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (997)
Q Consensus 794 dNs~N~ysD~~y~a~li~al~~~~~~~~~~-~-~~-~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~ 862 (997)
.|.-.+...+.+|+++..+.... . .. ..++..+-++++- -..-+...|+.+|..|+
T Consensus 150 -------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 150 -------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIA 208 (252)
T ss_dssp -------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC------SSHHHHHHHHHHHHHHT
T ss_pred -------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC------CCHHHHHHHHHHHHHHh
Confidence 15567888888998876532211 1 11 2244455555542 23445556667777663
No 35
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=82.73 E-value=5.6 Score=50.86 Aligned_cols=108 Identities=15% Similarity=0.220 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhhccccCcccHHHHHHHHHHHHHHHhcccc-cCCCCchhHHHHHHHHHHHHHHhcCCCC--hhhhhhhh
Q 001905 802 DVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRL-MPSYNGILTISCIRTLTQIALKLSGFIS--LDQVVKLI 878 (997)
Q Consensus 802 D~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~-~psy~~~vt~~~l~~~~~l~~~~~~~~~--~~~~~~~~ 878 (997)
|..=+-..|+||||+..+. .++.|.+|+.-.+. -.+...-|-++++.+|.+++- .-| .-++ ++
T Consensus 453 ~~~~~~~~LkaLGN~g~p~--------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----~~p~~v~~i--l~ 518 (1056)
T 1lsh_A 453 KEEEIVLALKALGNAGQPN--------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----RDPRKVQEI--VL 518 (1056)
T ss_dssp CHHHHHHHHHHHHHHTCGG--------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG----TCHHHHHHH--HH
T ss_pred ChHHHHHHHHHhhccCChh--------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh----hchHHHHHH--HH
Confidence 4556778899999987742 35566666542211 223344577888888887641 122 1121 23
Q ss_pred cccCCCCChHHHHHHHHHHhhccccccCChHHHHHHHHHHhccCccchh
Q 001905 879 KPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRG 927 (997)
Q Consensus 879 ~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 927 (997)
.-|.+......||++|+..|++ +......|.-+...+..||+.-.
T Consensus 519 ~i~~n~~e~~EvRiaA~~~Lm~----t~P~~~~l~~ia~~l~~E~~~QV 563 (1056)
T 1lsh_A 519 PIFLNVAIKSELRIRSCIVFFE----SKPSVALVSMVAVRLRREPNLQV 563 (1056)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHH----TCCCHHHHHHHHHHHTTCSCHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHH----HCcCHHHHHHHHHHHhhCchHHH
Confidence 4455566678999999999998 33333678888888888887544
No 36
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=82.54 E-value=34 Score=40.78 Aligned_cols=238 Identities=11% Similarity=0.079 Sum_probs=125.0
Q ss_pred cCChHHHHHHHHHHHcCCCCc--hhHHhHHHhhh--ccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCC
Q 001905 667 DGDVVAQAQAIAALEALPHLS--FNVVNTLNNFL--SDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDE 742 (997)
Q Consensus 667 drdv~aq~eAi~~l~~~~~~s--~~~~~~L~~~l--~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~ 742 (997)
|++-.-|--|+++|.....+. ..+...+.++| .|. ---||..||.||.++-....+-.-...++...++..+++
T Consensus 122 ~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~ 199 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQ 199 (621)
T ss_dssp SCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCC
Confidence 677788889999998764322 12344566777 554 567999999999987643221111001222222222333
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC----ChHHHHHHHHHHhhhcCCCCCC-----CChHHHHHHHHHHh
Q 001905 743 NIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----SPREAVEFVLQLLKYNDNNGNP-----YSDVFWLAALVQSV 813 (997)
Q Consensus 743 ~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~----~p~~v~~fll~ll~~NdNs~N~-----ysD~~y~a~li~al 813 (997)
+ ..|+.+...++..+...++. .-+-+.+.|-.++.-++.+.-. -.|.|-...+++.|
T Consensus 200 d--------------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll 265 (621)
T 2vgl_A 200 H--------------LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLL 265 (621)
T ss_dssp C--------------HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHG
T ss_pred C--------------ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHH
Confidence 2 24777777777777544421 1222444555555433221111 23788999999999
Q ss_pred hccccCcccHHHHHHHHHHHHHHHhc-ccccC-----CCCc---hhHHHHHHHHHHHHHHhcCCCCh-hhhhhhhcccCC
Q 001905 814 GELEFGQQSILFLSSLLKRIDRLLQF-DRLMP-----SYNG---ILTISCIRTLTQIALKLSGFISL-DQVVKLIKPFRD 883 (997)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~ei~r~~~~-d~~~p-----sy~~---~vt~~~l~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 883 (997)
+..... ++....+.+.+-+++.++. ++ .| .+.| .|-..|.+++..+. ...++ ......+..+..
T Consensus 266 ~~~~~~-~d~~~~~~l~~~L~~il~~~~~-~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~~~~~~L~~~L~ 339 (621)
T 2vgl_A 266 QCYPPP-EDPAVRGRLTECLETILNKAQE-PPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLVRACNQLGQFLQ 339 (621)
T ss_dssp GGSSSC-SSHHHHHHHHHHHHHHHHHHHS-CCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHSS
T ss_pred HHhCCC-CCHHHHHHHHHHHHHHHHhhcc-CcccccccccchHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHhc
Confidence 876532 1223334455555555533 11 12 2333 67788888887752 11110 111111122222
Q ss_pred CCChHHHHHHHHHHhhccccccCChH---HHHHHHHHHhc--cCccchh
Q 001905 884 FNTIWQVRVEASRALLDLEFHCNGID---SALSLFIKSVE--EEPSLRG 927 (997)
Q Consensus 884 ~~~~~~vr~~a~~~l~~~~~~~~~~~---~~l~~~~~~~~--~~~~~~~ 927 (997)
..-..+|..|+++|..+.......+ .-...++..+. .|+++|.
T Consensus 340 -~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~ 387 (621)
T 2vgl_A 340 -HRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQ 387 (621)
T ss_dssp -CSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred -CCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHH
Confidence 1235899999999998865432111 22334555554 4566655
No 37
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=80.95 E-value=29 Score=40.24 Aligned_cols=209 Identities=15% Similarity=0.193 Sum_probs=114.3
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------
Q 001905 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (997)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------ 723 (997)
.++.-|..+.+..-|.+|..+|.....++.. ++..|.+.|.++ .-.||..|+.||+.++....
T Consensus 123 ~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i 200 (529)
T 3tpo_A 123 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLV 200 (529)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 4556677777888999999888865333221 344577777664 67899999999999986421
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc-cccCCCCh----HHHHHHHHHHhhhcCCCC
Q 001905 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV-RAADNKSP----REAVEFVLQLLKYNDNNG 797 (997)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~-r~~~g~~p----~~v~~fll~ll~~NdNs~ 797 (997)
...|+..|+..... .+ -+....- +++....+++.+ |+.+...+ ..+...|..+|+.+
T Consensus 201 ~~~g~i~~Ll~lL~~--~~----------~~~~~~~-~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---- 263 (529)
T 3tpo_A 201 IKHGAIDPLLALLAV--PD----------LSTLACG-YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---- 263 (529)
T ss_dssp HHTTCHHHHHHTTCS--SC----------GGGSCHH-HHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS----
T ss_pred HHcCCcHHHHHHHhc--cc----------hhHhHHH-HHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC----
Confidence 22356777655542 11 0111112 334455566554 33322222 34566788888633
Q ss_pred CCCChHHHHHHHHHHhhccccCcccH-HHH--HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHH---------Hh
Q 001905 798 NPYSDVFWLAALVQSVGELEFGQQSI-LFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL---------KL 865 (997)
Q Consensus 798 N~ysD~~y~a~li~al~~~~~~~~~~-~~~--~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~---------~~ 865 (997)
|.--+...+.||+.+..+.... ..+ ..++.-+-.++. +-..-+-..|+.+|..++. --
T Consensus 264 ----~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~ 333 (529)
T 3tpo_A 264 ----DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG------ATELPIVTPALRAIGNIVTGTDEQTQKVID 333 (529)
T ss_dssp ----CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc------CCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence 3456777778887765432211 011 113333444443 2233455567777766531 11
Q ss_pred cCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhcccc
Q 001905 866 SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (997)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (997)
.|.++. +..++. . .-..+|.+|..+|-.+..
T Consensus 334 ~g~l~~--L~~LL~----~-~~~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 334 AGALAV--FPSLLT----N-PKTNIQKEATWTMSNITA 364 (529)
T ss_dssp TTGGGG--HHHHTT----C-SSHHHHHHHHHHHHHHHT
T ss_pred cccHHH--HHHHHc----C-CCHHHHHHHHHHHHHHhc
Confidence 232221 222321 1 235799999999988754
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=78.35 E-value=13 Score=36.88 Aligned_cols=133 Identities=20% Similarity=0.157 Sum_probs=87.0
Q ss_pred CchhHHHHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc--
Q 001905 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 723 (997)
Q Consensus 655 qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~-- 723 (997)
.+.+.....|-++.|...|.+|+.+|......+.. ++..|.+.|.++ --.||..|+.+|+.++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHH
Confidence 45677888888899999999999999865322211 345678888775 57999999999999874321
Q ss_pred -----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH--------HHHHHHHHHh
Q 001905 724 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR--------EAVEFVLQLL 790 (997)
Q Consensus 724 -----~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~--------~v~~fll~ll 790 (997)
...|++.|++..++. +.-+++....+|+.+-.. ++. .+...|+++|
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~------------------~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll 147 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP------------------NEQILQEALWALSNIASG---GNEQIQAVIDAGALPALVQLL 147 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS------------------CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCC------------------cHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCcHHHHHHHH
Confidence 123677777766431 124777777777777432 222 2456677777
Q ss_pred hhcCCCCCCCChHHHHHHHHHHhhcccc
Q 001905 791 KYNDNNGNPYSDVFWLAALVQSVGELEF 818 (997)
Q Consensus 791 ~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (997)
+. .|.-.+...+.+|+++..
T Consensus 148 ~~--------~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 148 SS--------PNEQILQEALWALSNIAS 167 (210)
T ss_dssp TC--------SCHHHHHHHHHHHHHHHT
T ss_pred cC--------CCHHHHHHHHHHHHHHHc
Confidence 62 244566677777776644
No 39
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=76.93 E-value=1.1e+02 Score=37.31 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=43.7
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccc
Q 001905 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (997)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~ 721 (997)
.+.+.-.|++...|..|+.+|...-.... .+...|.+.+.|+ .+.||..|+.+|+++...
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~--~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP--SVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHh
Confidence 44555578899999999999986533211 2345577778775 589999999999988754
No 40
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=71.91 E-value=26 Score=41.85 Aligned_cols=228 Identities=15% Similarity=0.131 Sum_probs=119.1
Q ss_pred cccCChHHHHHHHHHHHcCCCCc--hh----HHhHHHhhhc-cCcchhHHHHHHHHHHHhhccccccccc-HHHHHHHHH
Q 001905 665 EKDGDVVAQAQAIAALEALPHLS--FN----VVNTLNNFLS-DSKAFWRVRIEAAYALANTASEETDWAG-LLHLVKFYK 736 (997)
Q Consensus 665 ~~drdv~aq~eAi~~l~~~~~~s--~~----~~~~L~~~l~-d~~~f~~VR~~Aa~aL~~~~~~~~~~~g-~~~L~~~f~ 736 (997)
-.++|-.-|+-|++.|...-... .. ....+.++|. |+.. -||..|...|.++.++.+ ... +..|.++..
T Consensus 338 L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~--~Ir~~aL~lL~~l~~~~N-v~~Iv~eL~~yl~ 414 (621)
T 2vgl_A 338 LQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDV--SVRQRAVDLLYAMCDRSN-AQQIVAEMLSYLE 414 (621)
T ss_dssp SSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCH--HHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHH
T ss_pred hcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCH--hHHHHHHHHHHHHcChhh-HHHHHHHHHHHHH
Confidence 34688899999998887653221 11 2233455666 6653 399999999999998754 222 334444444
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhcc
Q 001905 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (997)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (997)
+ ++ .-+++.+..+|+.+=........-+.++|+++|+.. ++.+. ..++..+..+
T Consensus 415 ~--~d----------------~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~---~~~v~-----~ev~~~l~~i 468 (621)
T 2vgl_A 415 T--AD----------------YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA---GDYVS-----EEVWYRVIQI 468 (621)
T ss_dssp H--CC----------------HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH---GGGSC-----SHHHHHHHHH
T ss_pred h--cC----------------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh---cccch-----HHHHHHHHHH
Confidence 3 11 123445556777664333445678899999999854 33333 2333333332
Q ss_pred ccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcC---CCChhhhhhhhcccCCCCChHHHHHH
Q 001905 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG---FISLDQVVKLIKPFRDFNTIWQVRVE 893 (997)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vr~~ 893 (997)
....++ .-+.++..+-.++. -|..+..+-.+|.-.+.+-+-.... ..|.+-+..+...|. .....||..
T Consensus 469 i~~~~~--~~~~~~~~l~~~l~----~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~--~~~~~v~~~ 540 (621)
T 2vgl_A 469 VINRDD--VQGYAAKTVFEALQ----APACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH--LCSVPTRAL 540 (621)
T ss_dssp HGGGCS--CHHHHHHHHHHHHT----SSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT--TSCHHHHHH
T ss_pred HhCChh--HHHHHHHHHHHHHc----CccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc--cCCHHHHHH
Confidence 211111 01112222322222 3444433322333444443222211 113333322223332 234789999
Q ss_pred HHHHhhccccccCChHHHHHHHHHHhc----cCccchhhh
Q 001905 894 ASRALLDLEFHCNGIDSALSLFIKSVE----EEPSLRGQV 929 (997)
Q Consensus 894 a~~~l~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~ 929 (997)
++.+++.+..........+..++.... .|+.+|.|.
T Consensus 541 ~Lta~~Kl~~~~p~~~~~i~~~l~~~~~~~~~d~evrdRA 580 (621)
T 2vgl_A 541 LLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRA 580 (621)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHSSHHHHSCSSHHHHHHH
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999987655544455555554433 356677654
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=70.27 E-value=83 Score=37.30 Aligned_cols=208 Identities=14% Similarity=0.124 Sum_probs=109.5
Q ss_pred hHHHHHHcccCChHHHHHHHHHHHcCCCCc--------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------
Q 001905 658 QMWINQLEKDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (997)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~~~~s--------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------ 723 (997)
...+..|..+.|...|..|+.+|....... ...+..|.+.|.++ --.||..|+.+|.+++....
T Consensus 59 ~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~v 136 (644)
T 2z6h_A 59 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAV 136 (644)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 445666776678999999998887543211 11455688888765 37899999999999875421
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC-----ChHHHHHHHHHHhhhcCCCC
Q 001905 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK-----SPREAVEFVLQLLKYNDNNG 797 (997)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~-----~p~~v~~fll~ll~~NdNs~ 797 (997)
.-.+++.|+++.++. | - -++.+...+|+.+=-.+.. .-..+...|+++|+-.+
T Consensus 137 ~~~g~i~~Lv~lL~~~-----------~----~---~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~--- 195 (644)
T 2z6h_A 137 RLAGGLQKMVALLNKT-----------N----V---KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--- 195 (644)
T ss_dssp HHTTHHHHHHHGGGCC-----------C----H---HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC---
T ss_pred HHCCChHHHHHHHCcC-----------C----H---HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC---
Confidence 123577777766531 1 1 2444444444433211100 01135678888997322
Q ss_pred CCCChHHHHHHHHHHhhccccCcccHH-HHH-HHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCCh----
Q 001905 798 NPYSDVFWLAALVQSVGELEFGQQSIL-FLS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL---- 871 (997)
Q Consensus 798 N~ysD~~y~a~li~al~~~~~~~~~~~-~~~-~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~---- 871 (997)
+.--+.+.+.+|.++..+..... +.+ .++..+-++++- -..-+...|+.+|.+|+.........
T Consensus 196 ----~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i 265 (644)
T 2z6h_A 196 ----YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD------PSQRLVQNCLWTLRNLSDAATKQEGMEGLL 265 (644)
T ss_dssp ----CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTC------SCHHHHHHHHHHHHHHGGGCTTCCSCHHHH
T ss_pred ----hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhc------CCHHHHHHHHHHHHHHhhcchhhhhhhhHH
Confidence 12223344555555443332221 111 244444444432 12334456667777764311111111
Q ss_pred hhhhhhhcccCCCCChHHHHHHHHHHhhcccc
Q 001905 872 DQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (997)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (997)
..+..++. ..-..+|..|..+|..|..
T Consensus 266 ~~Lv~lL~-----~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 266 GTLVQLLG-----SDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHTT-----CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-----CCCHHHHHHHHHHHHHHHc
Confidence 11223322 1236899999999988754
No 42
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=69.06 E-value=21 Score=46.20 Aligned_cols=233 Identities=11% Similarity=0.077 Sum_probs=124.6
Q ss_pred HHHHHcccCChHHHHHHHHHHHcC-CCC--------chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHH
Q 001905 660 WINQLEKDGDVVAQAQAIAALEAL-PHL--------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLH 730 (997)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~-~~~--------s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~ 730 (997)
...++ .+.|-..|..|...|.+. ... ...+...|.+.|.|+ -+.||..|+.+|+..+..-.. ..+..
T Consensus 11 lL~~l-~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~--~~~vR~~A~~~L~~l~~~~~~-~~~~~ 86 (1230)
T 1u6g_C 11 LLEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK--NGEVQNLAVKCLGPLVSKVKE-YQVET 86 (1230)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTSCH-HHHHH
T ss_pred HHHhc-CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhCCH-HHHHH
Confidence 34444 467888888888777542 111 113566677888764 799999999999988753211 12233
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC----------ChHHHHHHHHHHhhhcCCCCCCC
Q 001905 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----------SPREAVEFVLQLLKYNDNNGNPY 800 (997)
Q Consensus 731 L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~----------~p~~v~~fll~ll~~NdNs~N~y 800 (997)
++...-+..-+++. -++.+.-.+++.+=..-+. ..+++..+|++.+.- +.
T Consensus 87 i~~~Ll~~l~d~~~--------------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~---~~--- 146 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKE--------------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK---QE--- 146 (1230)
T ss_dssp HHHHHHHHTTCSSS--------------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC---CS---
T ss_pred HHHHHHHHhcCCcH--------------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC---CC---
Confidence 33322222222211 1456655666655433332 256788888888752 22
Q ss_pred ChHHHHHHHHHHhhccc--cCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCC-CC--hhhhh
Q 001905 801 SDVFWLAALVQSVGELE--FGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGF-IS--LDQVV 875 (997)
Q Consensus 801 sD~~y~a~li~al~~~~--~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~-~~--~~~~~ 875 (997)
|.-.+...+.+|+.+. .+..-..+...++..+-..+.-+ +..|..++++++..++...... ++ ++.+.
T Consensus 147 -~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~------~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~ 219 (1230)
T 1u6g_C 147 -DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP------RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL 219 (1230)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS------SHHHHHHHHHHHHHHTTTC----CTTHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2357777888887642 12111123455666665555421 2356677778877764321111 11 12222
Q ss_pred hhhcccCCCCChHHHHHHHHHHhhccccc-----cCChHHHHHHHHHHhc-cCccchh
Q 001905 876 KLIKPFRDFNTIWQVRVEASRALLDLEFH-----CNGIDSALSLFIKSVE-EEPSLRG 927 (997)
Q Consensus 876 ~~~~~~~~~~~~~~vr~~a~~~l~~~~~~-----~~~~~~~l~~~~~~~~-~~~~~~~ 927 (997)
..+.. . .-..+|.+|+++|..+... ..-+...+..++..+. .+|.+|.
T Consensus 220 ~~L~~---~-~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~ 273 (1230)
T 1u6g_C 220 SELSK---N-DSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELRE 273 (1230)
T ss_dssp HHHHH---T-CSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHH
T ss_pred HHhcc---C-CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 22211 1 1135788888888876432 1222467778887774 3566665
No 43
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=67.63 E-value=2.5e+02 Score=35.06 Aligned_cols=257 Identities=14% Similarity=0.089 Sum_probs=137.7
Q ss_pred HHHcccCChHHHHHHHHHHHc--CCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcC
Q 001905 662 NQLEKDGDVVAQAQAIAALEA--LPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRR 739 (997)
Q Consensus 662 ~QL~~drdv~aq~eAi~~l~~--~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~ 739 (997)
.++-.|.+-+.+.-|..+|+- ..+.+..+++.|..+++++. -=.||..||.+|+.+.-.. ......|++.+..-.
T Consensus 478 ~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~--~e~~~~li~~L~~~~ 554 (963)
T 4ady_A 478 KEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR--QELADDLITKMLASD 554 (963)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC--GGGGHHHHHHHHHCS
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC--hHHHHHHHHHHHhCC
Confidence 333344443444455555553 23444455566655554432 3368888888888653221 123566666666421
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccC
Q 001905 740 FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFG 819 (997)
Q Consensus 740 ~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~ 819 (997)
+ -.++.+-.-|++.--...| -..+.+=||..+. +| .+.+.+.+.+.|||.+.++
T Consensus 555 -d----------------p~vRygaa~alglAyaGTG--n~~aIq~LL~~~~-~d------~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 555 -E----------------SLLRYGGAFTIALAYAGTG--NNSAVKRLLHVAV-SD------SNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp -C----------------HHHHHHHHHHHHHHTTTSC--CHHHHHHHHHHHH-HC------SCHHHHHHHHHHHHHHTSS
T ss_pred -C----------------HHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHhc-cC------CcHHHHHHHHHHHHhhccC
Confidence 1 1244544444443332233 3455554555544 12 2356788899999987665
Q ss_pred cccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCCCCChHHHHHHHHHHhh
Q 001905 820 QQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALL 899 (997)
Q Consensus 820 ~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~ 899 (997)
.... ..+++ +.+.-+++..|-.++--+|.. ..+|....+.+ ..+.++.. +.-..||..|+.+|=
T Consensus 609 ~~e~--v~rlv---------~~L~~~~d~~VR~gAalALGl---i~aGn~~~~ai-d~L~~L~~-D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 609 DYTT--VPRIV---------QLLSKSHNAHVRCGTAFALGI---ACAGKGLQSAI-DVLDPLTK-DPVDFVRQAAMIALS 672 (963)
T ss_dssp SCSS--HHHHT---------TTGGGCSCHHHHHHHHHHHHH---HTSSSCCHHHH-HHHHHHHT-CSSHHHHHHHHHHHH
T ss_pred CHHH--HHHHH---------HHHHhcCCHHHHHHHHHHHHH---hccCCCcHHHH-HHHHHHcc-CCCHHHHHHHHHHHH
Confidence 4321 12222 222336665666565555443 33554433322 34444443 455789999999998
Q ss_pred ccccccCC-----hHHHHHHHHHHhc---cCccchhh----hHHHHhhhccchhccC-CCCCCCcCcHHHHHHHHHHh
Q 001905 900 DLEFHCNG-----IDSALSLFIKSVE---EEPSLRGQ----VKLGIHAMRICQIKGG-SDSNHEVDTVTLVALLNLLE 964 (997)
Q Consensus 900 ~~~~~~~~-----~~~~l~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 964 (997)
.++....- ....++-++.+.. .||..+-. ..+....-|++.+.-- ++ +.-++..++++++..+-
T Consensus 673 ~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~s~-~~~~~~~a~~Gl~~f~q 749 (963)
T 4ady_A 673 MILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENAD-TGTLDTKSVVGLVMFSQ 749 (963)
T ss_dssp HHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTT-TCCBCHHHHHHHHHHTT
T ss_pred HHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeeecc-CCCCCHHHHHHHHHHHH
Confidence 87765332 3456677777764 35554332 2444455566666431 22 34688999999988753
No 44
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=67.29 E-value=76 Score=38.64 Aligned_cols=260 Identities=11% Similarity=0.088 Sum_probs=134.3
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHH
Q 001905 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEA 763 (997)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~a 763 (997)
++..|...+..+ .-.+|..|+.+|..++.... +..|++.|+.+..+.- +. ++ -++..
T Consensus 458 vIp~Lv~Ll~S~--s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~-------~~----~~----~~k~~ 520 (778)
T 3opb_A 458 LISFLKREMHNL--SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQ-------DI----GE----PIRIL 520 (778)
T ss_dssp HHHHHHHHGGGS--CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC--------------CC----HHHHH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-------Cc----ch----HHHHH
Confidence 566777666553 67899999999999875432 2345788888776421 00 01 24555
Q ss_pred HHHHHhhccc-c------CCCChHHHHHHHHHHhhhcCCCCC-CCChH-----HHHHHHHHHhhccccCccc--HHHHHH
Q 001905 764 IPHAVAMVRA-A------DNKSPREAVEFVLQLLKYNDNNGN-PYSDV-----FWLAALVQSVGELEFGQQS--ILFLSS 828 (997)
Q Consensus 764 i~~a~a~~r~-~------~g~~p~~v~~fll~ll~~NdNs~N-~ysD~-----~y~a~li~al~~~~~~~~~--~~~~~~ 828 (997)
-.+||+++=- . .|..+.++.++|++||....++.+ +-++. -=....+.||+++....++ ...-.+
T Consensus 521 AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 521 GCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 5677776542 2 254556999999999985333322 11111 1144667788777554321 112233
Q ss_pred HHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcC----CCCh--hh---hhhhhcccCCCCChHHHHHHHHHHhh
Q 001905 829 LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG----FISL--DQ---VVKLIKPFRDFNTIWQVRVEASRALL 899 (997)
Q Consensus 829 ~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~----~~~~--~~---~~~~~~~~~~~~~~~~vr~~a~~~l~ 899 (997)
++++-.-.-.++.++=|-+.-|..++.++++.|...-.+ .... +. -+..+-.+.+. .-..+|.+|..+|-
T Consensus 601 Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALA 679 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFA 679 (778)
T ss_dssp HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 444311223334445566668888999999998632111 1100 00 00112222222 22477888887777
Q ss_pred ccccccCCh-------HHHHHHHHHHhc---cCccchhhh-HHHHhhhccchhccCCCCCCC-cCcHHHHHHHHHHhccc
Q 001905 900 DLEFHCNGI-------DSALSLFIKSVE---EEPSLRGQV-KLGIHAMRICQIKGGSDSNHE-VDTVTLVALLNLLESRI 967 (997)
Q Consensus 900 ~~~~~~~~~-------~~~l~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 967 (997)
-+.-..... ...+..++..++ .++.+|.+. .++.......+-.++.+.-.. ..+..+.+.|-..+.+.
T Consensus 680 nLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 680 NIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred HhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 763100000 123344444443 467777664 344444444433332221112 23666777776666543
No 45
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=67.00 E-value=63 Score=39.77 Aligned_cols=55 Identities=16% Similarity=0.068 Sum_probs=38.7
Q ss_pred cccCChHHHHHHHHHHHcCCCCc--------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccc
Q 001905 665 EKDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (997)
Q Consensus 665 ~~drdv~aq~eAi~~l~~~~~~s--------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~ 721 (997)
-.|.+...|..|+.+|..+-... ..+...|.+.+.|+ -..||..|+.+|+.++..
T Consensus 183 l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~--~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 183 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDE--EPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp TTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHh
Confidence 34678888999999998652211 12445666667665 568999999999987753
No 46
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=66.77 E-value=1.3e+02 Score=36.59 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=76.2
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccc----cc
Q 001905 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD----WA 726 (997)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~----~~ 726 (997)
.+.++-.+.+...|..|+.+|...-.... .+...|.+.+.|+ ...||..|+.+|++++..... ..
T Consensus 373 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~ 450 (861)
T 2bpt_A 373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ--SLQVKETTAWCIGRIADSVAESIDPQQ 450 (861)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHGGGSCTTT
T ss_pred HHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 44455567888888899988887643211 1344566777775 688999999999987743111 11
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCC--------CChHHHHHHHHHHhhhcCCCCC
Q 001905 727 GLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN--------KSPREAVEFVLQLLKYNDNNGN 798 (997)
Q Consensus 727 g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g--------~~p~~v~~fll~ll~~NdNs~N 798 (997)
-+..++...-+..-+ . | -|+.+...|++.+-..-+ ..-+.+...|+.+++..|+
T Consensus 451 ~~~~~l~~l~~~l~~---~-~-----------~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~--- 512 (861)
T 2bpt_A 451 HLPGVVQACLIGLQD---H-P-----------KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDN--- 512 (861)
T ss_dssp THHHHHHHHHHHHTS---C-H-----------HHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCC---
T ss_pred HHHHHHHHHHHHhcc---C-h-----------HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCc---
Confidence 133333322221101 1 1 256665566654322111 1235677788888874332
Q ss_pred CCChHHHHHHHHHHhhcc
Q 001905 799 PYSDVFWLAALVQSVGEL 816 (997)
Q Consensus 799 ~ysD~~y~a~li~al~~~ 816 (997)
|.-.+.+++++|+.+
T Consensus 513 ---~~~vr~~a~~al~~l 527 (861)
T 2bpt_A 513 ---EFNARASAFSALTTM 527 (861)
T ss_dssp ---GGGHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHH
Confidence 123567777777765
No 47
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=64.33 E-value=45 Score=33.91 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=42.9
Q ss_pred HHHHHcccCChHHHHHHHHHHHcC----CC----CchhHHhHHHhhhc-cCcchhHHHHHHHHHHHhhcc
Q 001905 660 WINQLEKDGDVVAQAQAIAALEAL----PH----LSFNVVNTLNNFLS-DSKAFWRVRIEAAYALANTAS 720 (997)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~----~~----~s~~~~~~L~~~l~-d~~~f~~VR~~Aa~aL~~~~~ 720 (997)
+..++ +|+|..-|.+|+..|... +. .-..++.+|.+.+. |. -..||..|+.+|+.++.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~ 86 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS--NVVLVAMAGKCLALLAK 86 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHH
Confidence 55555 689999999999887642 21 11246778888885 74 78899999999998885
No 48
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=64.19 E-value=1.1e+02 Score=37.52 Aligned_cols=261 Identities=13% Similarity=0.097 Sum_probs=129.0
Q ss_pred HhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 001905 691 VNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAM 770 (997)
Q Consensus 691 ~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~ 770 (997)
+..|.+.+.+. --.++..|+.+|.+++.......+...++..+-+..-.+ +--+++....+|+.
T Consensus 362 l~~Ll~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~--------------d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 362 MQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSD--------------DINVVTCAAGILSN 425 (780)
T ss_dssp HHHHGGGTTCS--CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCS--------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCC--------------CHHHHHHHHHHHHH
Confidence 45677777765 357899999999988765444444444444443322111 12377888888887
Q ss_pred ccccCCCCh-----HHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCcccHHHH------HHHHHHHHHHHhc
Q 001905 771 VRAADNKSP-----REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFL------SSLLKRIDRLLQF 839 (997)
Q Consensus 771 ~r~~~g~~p-----~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~------~~~~~ei~r~~~~ 839 (997)
+-..+...- ..+...|+++|....+. .-.+...+.+|+++.......... ..++.-|.++++-
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~------~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~ 499 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDR------EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP 499 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCH------HHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC
Confidence 743211000 13567888888753221 136667788888875432211111 1133334444432
Q ss_pred ccccCCCCchhHHHHHHHHHHHHH--------HhcCCCChhhhhhhhcc-----------------cCCCCChHHHHHHH
Q 001905 840 DRLMPSYNGILTISCIRTLTQIAL--------KLSGFISLDQVVKLIKP-----------------FRDFNTIWQVRVEA 894 (997)
Q Consensus 840 d~~~psy~~~vt~~~l~~~~~l~~--------~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~vr~~a 894 (997)
+...-|-.+|..+|.+|+. .-.|.+| .+..++.. +...+...+++.+|
T Consensus 500 -----~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a 572 (780)
T 2z6g_A 500 -----PSHWPLIKATVGLIRNLALCPANHAPLREQGAIP--RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC 572 (780)
T ss_dssp -----TCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHH
T ss_pred -----CChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHH--HHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHH
Confidence 2221333444456666542 0122222 11122211 44445567888888
Q ss_pred HHHhhccccc--------cCChHHHHHHHHHHhcc-CccchhhhHHHHhhhccchhccCCCCCCCcCcHHHHHHHHHHhc
Q 001905 895 SRALLDLEFH--------CNGIDSALSLFIKSVEE-EPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLES 965 (997)
Q Consensus 895 ~~~l~~~~~~--------~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (997)
..||-.+... ..| ++..++..+.. ++.++... ..++..+.. ..+....|.....++.|..|..
T Consensus 573 ~~aL~~La~~~~~~~~l~~~~---~i~~Lv~lL~~~~~~v~~~a---~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~ 644 (780)
T 2z6g_A 573 TGALHILARDIHNRIVIRGLN---TIPLFVQLLYSPIENIQRVA---AGVLCELAQ--DKEAAEAIEAEGATAPLTELLH 644 (780)
T ss_dssp HHHHHHHTTSHHHHHHHHHTC---CHHHHHHGGGCSCHHHHHHH---HHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHhcChhhHHHHHHCC---cHHHHHHHHcCCCHHHHHHH---HHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHc
Confidence 8888876431 111 24455555543 34343321 122222111 0011112222233445555544
Q ss_pred cccccchhhhhhHHHHHHHHhCCCcc
Q 001905 966 RIAFNNVFLRHHLFGILQILAGSPHA 991 (997)
Q Consensus 966 ~~~~~~~~lr~~~~~~~~~l~g~~~~ 991 (997)
+.|..+|..+...+..|...+|.
T Consensus 645 ---~~~~~Vr~~A~~aL~~l~~~~~~ 667 (780)
T 2z6g_A 645 ---SRNEGVATYAAAVLFRMSEDKPQ 667 (780)
T ss_dssp ---CSCHHHHHHHHHHHHHHHTTSCT
T ss_pred ---CCCHHHHHHHHHHHHHHHcCChH
Confidence 34677777777777777666553
No 49
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=63.65 E-value=1.1e+02 Score=37.22 Aligned_cols=238 Identities=14% Similarity=0.073 Sum_probs=119.5
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------
Q 001905 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (997)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------- 723 (997)
.+-+|-+++|...|..|+.+|......+. ..+..|.+.|.+...--.||..|+.+|+.++....
T Consensus 403 ~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~ 482 (780)
T 2z6g_A 403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN 482 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 34455567888899999888876533321 24556777776522122899999999999874211
Q ss_pred ---ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC----hHHHHHHHHHHhhhcCC-
Q 001905 724 ---DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS----PREAVEFVLQLLKYNDN- 795 (997)
Q Consensus 724 ---~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~----p~~v~~fll~ll~~NdN- 795 (997)
...|++.|++..+.- + ..-|+++...+|+.+-...... -..+...|+++|+..+.
T Consensus 483 ~v~~~~~l~~L~~lL~~~-----------~------~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 545 (780)
T 2z6g_A 483 AVRLHYGLPVVVKLLHPP-----------S------HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 545 (780)
T ss_dssp HHHHTTCHHHHHHTTSTT-----------C------CHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHhcCC-----------C------hHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchh
Confidence 124577777655421 0 0237788888888774210000 01255677888874320
Q ss_pred --------CCC-----CCChHHHHHHHHHHhhccccCcccHHHH--HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHH
Q 001905 796 --------NGN-----PYSDVFWLAALVQSVGELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQ 860 (997)
Q Consensus 796 --------s~N-----~ysD~~y~a~li~al~~~~~~~~~~~~~--~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~ 860 (997)
-+| .-++.-.+...+.+|+++.....+...+ ..++.-+..+++- -..-|-..|..+|.+
T Consensus 546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~------~~~~v~~~a~~aL~~ 619 (780)
T 2z6g_A 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYS------PIENIQRVAAGVLCE 619 (780)
T ss_dssp HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGC------SCHHHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcC------CCHHHHHHHHHHHHH
Confidence 011 1122334566777777765432221111 1134444444432 122333445556655
Q ss_pred HHH--------HhcCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhccccccCCh-HH--HHHHHHHHhccCccchh
Q 001905 861 IAL--------KLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI-DS--ALSLFIKSVEEEPSLRG 927 (997)
Q Consensus 861 l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~--~l~~~~~~~~~~~~~~~ 927 (997)
|+. .-.|.+ +.+..++. ..-..||..|..+|-.+....... .. ++.++-.++.+++....
T Consensus 620 L~~~~~~~~~i~~~g~i--~~L~~Ll~-----~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~w~ 690 (780)
T 2z6g_A 620 LAQDKEAAEAIEAEGAT--APLTELLH-----SRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWN 690 (780)
T ss_dssp HHTSHHHHHHHHHTTCH--HHHHHGGG-----CSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC---------
T ss_pred HhcCHHHHHHHHHCCCH--HHHHHHHc-----CCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCCcccc
Confidence 531 112222 22323321 223679999999998886544322 12 44555555666655443
No 50
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=63.11 E-value=1.8e+02 Score=32.89 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=109.0
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCc--------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------
Q 001905 659 MWINQLEKDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (997)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s--------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------- 723 (997)
..+..|+.+.|...|..|+.+|....... ......|.+.|.++. -.||..|+.+|.+++....
T Consensus 63 ~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~ 140 (529)
T 1jdh_A 63 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVR 140 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34455666668888999999888743211 014456788887753 7899999999999875421
Q ss_pred ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC-----ChHHHHHHHHHHhhhcCCCCC
Q 001905 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK-----SPREAVEFVLQLLKYNDNNGN 798 (997)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~-----~p~~v~~fll~ll~~NdNs~N 798 (997)
...+++.|+++.++ + | --++.....+++.+--.+.. .-..+...|+++|+..+
T Consensus 141 ~~g~i~~L~~ll~~----~-------~-------~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~---- 198 (529)
T 1jdh_A 141 LAGGLQKMVALLNK----T-------N-------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT---- 198 (529)
T ss_dssp HHTHHHHHHHGGGC----C-------C-------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC----
T ss_pred HcCCHHHHHHHHhc----C-------C-------HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC----
Confidence 23457777776653 1 1 12444444455443211100 11135677888888442
Q ss_pred CCChHHHHHHHHHHhhccccCcccHHH-H-HHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCCh----h
Q 001905 799 PYSDVFWLAALVQSVGELEFGQQSILF-L-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL----D 872 (997)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~~~~-~-~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~----~ 872 (997)
+.--+.++..+|.++..+...... . ..++..+-++++- ...-+-..|+.+|..|+......... .
T Consensus 199 ---~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~ 269 (529)
T 1jdh_A 199 ---YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD------PSQRLVQNCLWTLRNLSDAATKQEGMEGLLG 269 (529)
T ss_dssp ---CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS------SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHH
T ss_pred ---hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC------CChHHHHHHHHHHHHHhcCChhhHHHHhHHH
Confidence 222333444555544433222211 1 1244444444431 12334445667777764311111001 1
Q ss_pred hhhhhhcccCCCCChHHHHHHHHHHhhcccc
Q 001905 873 QVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (997)
Q Consensus 873 ~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (997)
.+..++ . ..-..+|..|..+|-.+..
T Consensus 270 ~L~~ll----~-~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 270 TLVQLL----G-SDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHT----T-CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHH----c-CCCHHHHHHHHHHHHHHhc
Confidence 122222 1 2236899999999988754
No 51
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=62.78 E-value=1.2e+02 Score=35.73 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=61.9
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHh
Q 001905 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVA 769 (997)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a 769 (997)
++..|.+.+.+. .-.+|..|+.+|..++.......+...++..+-+..-.+ | --+++....+|+
T Consensus 225 ~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~--------d------~~v~~~a~~aL~ 288 (644)
T 2z6h_A 225 GMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSD--------D------INVVTCAAGILS 288 (644)
T ss_dssp HHHHHHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCS--------C------HHHHHHHHHHHH
T ss_pred CHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCC--------C------HHHHHHHHHHHH
Confidence 345677777664 678999999999998765433333333333333221111 1 136777777887
Q ss_pred hccccCCCCh-----HHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhcccc
Q 001905 770 MVRAADNKSP-----REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (997)
Q Consensus 770 ~~r~~~g~~p-----~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (997)
.+-..+...- ..+...|+++|+..++ ..--+...+.+|+++..
T Consensus 289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~------~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGD------REDITEPAICALRHLTS 336 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHHcCCHHHHHHHHHccCC------cHHHHHHHHHHHHHHhc
Confidence 7743211000 1256788888885321 13467778888888754
No 52
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=59.43 E-value=67 Score=32.41 Aligned_cols=129 Identities=21% Similarity=0.200 Sum_probs=79.3
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccccc------
Q 001905 661 INQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW------ 725 (997)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~------ 725 (997)
.-++-++.+...|..|+.+|......+.. +...|.+.|.++ -..||..|+.+|+.++......
T Consensus 59 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 136 (252)
T 4db8_A 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVID 136 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence 33455667888999999999876432211 456788888775 5799999999999987643221
Q ss_pred -ccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCCh-----HHHHHHHHHHhhhcCCCCCC
Q 001905 726 -AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP-----REAVEFVLQLLKYNDNNGNP 799 (997)
Q Consensus 726 -~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p-----~~v~~fll~ll~~NdNs~N~ 799 (997)
.|++.|+++.++ + +.-+++....+|+.+=..+...- ..+...|+++|+..
T Consensus 137 ~~~i~~L~~lL~~----~--------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~------ 192 (252)
T 4db8_A 137 AGALPALVQLLSS----P--------------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP------ 192 (252)
T ss_dssp TTHHHHHHHGGGC----S--------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS------
T ss_pred CCCHHHHHHHHhC----C--------------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC------
Confidence 356677665542 0 12467777777777643211000 12345667777621
Q ss_pred CChHHHHHHHHHHhhccc
Q 001905 800 YSDVFWLAALVQSVGELE 817 (997)
Q Consensus 800 ysD~~y~a~li~al~~~~ 817 (997)
|.--+...+.+|+++.
T Consensus 193 --~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 193 --NEQILQEALWALSNIA 208 (252)
T ss_dssp --SHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHHh
Confidence 4455666677777654
No 53
>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease; HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB: 2y50_A* 2y6i_A*
Probab=58.06 E-value=5.2 Score=48.67 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhcccccCCCCC---------hhHHHHHHHHHHHH
Q 001905 347 IKLSFALARQWFGVYITPELPN---------DEWLLDGLAGFLTD 382 (997)
Q Consensus 347 ~~iaHElAHQWFG~lVt~~~w~---------d~WLnEGfA~Yl~~ 382 (997)
..+.||++|.-=|-+..+..|. -.|+.||+|.||+.
T Consensus 424 e~f~HEytHyLdgRy~~~G~f~~~~~y~~~~~vW~~EG~AEY~s~ 468 (785)
T 2y3u_A 424 ELFRHEYTHYLQARYLVDGLWGQGPFYEKNRLTWFDEGTAEFFAG 468 (785)
T ss_dssp HHHHHHHHHHHHHHHTSCSSTTSSGGGTTTCSHHHHHHHHHHHTT
T ss_pred ccccchhhhccccccccccccccCcccccCCCceehhhHHHHHhc
Confidence 4668999999977666666665 57999999999964
No 54
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Probab=53.39 E-value=79 Score=33.85 Aligned_cols=103 Identities=11% Similarity=0.110 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCccEE-EECC--CCcccccccccchhhccc--ccccccccchhhhhhHHHHHH
Q 001905 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV-FLAP--EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKLSF 351 (997)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V-~vp~--~~~~~~~~~gagL~i~~~--~lL~~~~~~d~~~~~~~~iaH 351 (997)
.+..+.-.+.++.+||.++|| .=|+.- .++ .|-. ...++ +..|..| +|.+ ...++ .....+++|
T Consensus 72 ~~~DAhy~a~~~~d~y~~~~g-r~~id~-~l~~~Vhyg~~y~NA-fWdG~~M-~fGDG~~~~~p-------~~~lDVv~H 140 (301)
T 1u4g_A 72 PLNDAHFFGGVVFKLYRDWFG-TSPLTH-KLYMKVHYGRSVENA-YWDGTAM-LFGDGATMFYP-------LVSLDVAAH 140 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-SCSSSS-CEEEEESCTTTCCCE-EECSSCE-EECCCCSSBSC-------SCCHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHHcC-CCCCCC-ceEEEEecCCCccCc-EecCcEE-EeeCCCccccc-------ccccceeee
Confidence 355666678899999999998 557753 333 2321 11112 1111112 2221 11111 123458999
Q ss_pred HHHHhhhcccccCCCCChh-HHHHHHHHHHHHHHHHHHhC
Q 001905 352 ALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFIKKFLG 390 (997)
Q Consensus 352 ElAHQWFG~lVt~~~w~d~-WLnEGfA~Yl~~~~~~~~~G 390 (997)
|++|--.-....+....+. =|||||+..+...+-....|
T Consensus 141 E~tHGVt~~~agL~y~~eSGaLnEs~SDifG~~ve~~~~~ 180 (301)
T 1u4g_A 141 EVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEAAEFYMRG 180 (301)
T ss_dssp HHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccceeccccCccccCCccchhHHHHHHHHHHHHHHhcC
Confidence 9999987776555444444 49999999998765433333
No 55
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans}
Probab=52.90 E-value=82 Score=34.35 Aligned_cols=107 Identities=9% Similarity=0.056 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCCC--ccEE-EEC--CCCcccccccccchhhccc--ccccccccchhhhhhHHH
Q 001905 276 SKIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLA--PEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIK 348 (997)
Q Consensus 276 ~~~~~~~~~~~~~l~~~e~~~g~~YP~~k--~~~V-~vp--~~~~~~~~~~gagL~i~~~--~lL~~~~~~d~~~~~~~~ 348 (997)
..+..+...+....+||.+.|| .=++.- ..++ .|- ....++ +..|..| +|.+ ...|.+- .....+
T Consensus 88 ~av~~ay~~~~~t~d~y~~~~g-rnsid~~G~~l~~~VHyg~~y~NA-fWdG~~M-~fGDG~g~~f~~~-----~~~lDV 159 (341)
T 2vqx_A 88 VAVDEAYDYLGVTYDFFWQAFK-RNSLDNQGLPLTGSVHYGKEYQNA-FWNGQQM-VFGDGDGEIFNRF-----TIAIDV 159 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCSTTSSCCCEEEEESCSSSCCCE-EECSSCE-EECCCCSSSBCCT-----TSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeeEEEEecCCCccCc-eecCcEe-EeeCCCCcccCCc-----ccchhh
Confidence 3455666678889999999999 445531 3333 232 111122 1111112 2211 1111111 112458
Q ss_pred HHHHHHHhhhcccccCCCCChh-HHHHHHHHHHHHHHHHHHhC
Q 001905 349 LSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFIKKFLG 390 (997)
Q Consensus 349 iaHElAHQWFG~lVt~~~w~d~-WLnEGfA~Yl~~~~~~~~~G 390 (997)
++||++|--.-..-.+..-.+. =|||||+.++...+-....+
T Consensus 160 v~HEltHGVt~~~agL~Y~~eSGaLNEs~SDifG~~ve~~~~~ 202 (341)
T 2vqx_A 160 VGHALAHGVTESEAGLIYFQQAGALNESLSDVFGSLVKQFHLK 202 (341)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcccceecccCCccccCCCcchhhHHHHHHHHHHHHHhcC
Confidence 9999999977665444433333 49999999998766544433
No 56
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=52.90 E-value=86 Score=34.43 Aligned_cols=60 Identities=7% Similarity=0.071 Sum_probs=23.5
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHhcCCC--ChhhhhhhhcccCCCCChHHHHHHHHHHhhccccccC
Q 001905 842 LMPSYNGILTISCIRTLTQIALKLSGFI--SLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN 906 (997)
Q Consensus 842 ~~psy~~~vt~~~l~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~ 906 (997)
|.-+-++.|-..|.++++.+...-.+.+ ....+..++.. .+ ..+|..|++.|..+....+
T Consensus 258 ~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss-~d----~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 258 CLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSS-PK----AALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp CCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHS-SS----SSSHHHHHHCC--------
T ss_pred HHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcC-CC----chHHHHHHHHHHHHHHHCc
Confidence 3345566777788888877532101111 01111111111 11 3578888888887754444
No 57
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=51.02 E-value=2.5e+02 Score=35.07 Aligned_cols=162 Identities=12% Similarity=0.153 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHH
Q 001905 707 VRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFV 786 (997)
Q Consensus 707 VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fl 786 (997)
.+.-|+.+|+-+-.-.. ..|+..|.+ | +|+.+ ++ .. +++-.=.-|++.+-...+ .++.++|
T Consensus 374 ~k~sA~aSLGlIh~g~~-~~gl~~L~~-----y------L~~~~--s~-~~-~ik~GAllaLGli~ag~~---~~~~~lL 434 (963)
T 4ady_A 374 AKFTATASLGVIHKGNL-LEGKKVMAP-----Y------LPGSR--AS-SR-FIKGGSLYGLGLIYAGFG---RDTTDYL 434 (963)
T ss_dssp HHHHHHHHHHHHTSSCT-TTHHHHHTT-----T------STTSC--CS-CH-HHHHHHHHHHHHHTTTTT---HHHHHHH
T ss_pred HHHHHHHHhhhhccCch-HHHHHHHHH-----h------ccccC--CC-cH-HHHHHHHHHHHHhcCCCc---HHHHHHH
Confidence 47778888886543211 135555532 2 22110 00 12 356656677888754444 3789999
Q ss_pred HHHhhhcCCCCCCCChHHHHHHHHHHhhccccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhc
Q 001905 787 LQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLS 866 (997)
Q Consensus 787 l~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~ 866 (997)
.+.|..+++..+.=+....+...+-+||.+-.+..+. .+++.|...+.-|.- ++. +.-++ -|++-..
T Consensus 435 ~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e----ev~e~L~~~L~dd~~------~~~--~~Aal-ALGli~v 501 (963)
T 4ady_A 435 KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI----EVYEALKEVLYNDSA------TSG--EAAAL-GMGLCML 501 (963)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH----HHHHHHHHHHHTCCH------HHH--HHHHH-HHHHHHT
T ss_pred HHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhcCCH------HHH--HHHHH-HHhhhhc
Confidence 9999876633333223457767777999877765543 344444444444421 222 11111 1444445
Q ss_pred CCCChhhhhhhhcccCCCCChHHHHHHHHHHhhcc
Q 001905 867 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDL 901 (997)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~ 901 (997)
|....+.+..++ .+.....-..+|..|..+|=.+
T Consensus 502 GTgn~~ai~~LL-~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 502 GTGKPEAIHDMF-TYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp TCCCHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHH-HHHhccCcHHHHHHHHHHHHhh
Confidence 666655443333 2222233467887777776544
No 58
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=48.81 E-value=14 Score=43.85 Aligned_cols=205 Identities=18% Similarity=0.271 Sum_probs=109.5
Q ss_pred ceeeEecccCchh--HHHHHHcccCChHHHHHHHHHHHcC----CC-------CchhHHhHHHhhhccCcchhHHHHHHH
Q 001905 646 EYLAEIHFNQPVQ--MWINQLEKDGDVVAQAQAIAALEAL----PH-------LSFNVVNTLNNFLSDSKAFWRVRIEAA 712 (997)
Q Consensus 646 e~l~~v~~~qp~~--m~~~QL~~drdv~aq~eAi~~l~~~----~~-------~s~~~~~~L~~~l~d~~~f~~VR~~Aa 712 (997)
.|++++-+..++. ..+. |-.+.|...++-|++.|... |. ..+..+..|...|.|+| =-||.||.
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~-lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRneal 187 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLS-LLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR--EVIRNDGV 187 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS--HHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHH-HhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch--HHHHHHHH
Confidence 4555554444422 2333 34678999998888777632 11 01124567888898875 67999999
Q ss_pred HHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCC----CChHHHHHHHHH
Q 001905 713 YALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN----KSPREAVEFVLQ 788 (997)
Q Consensus 713 ~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g----~~p~~v~~fll~ 788 (997)
..|........+ ++.++ +| .-|+++-++.|+.+.| ..-.++...|.+
T Consensus 188 lLL~~Lt~~n~~---iQklV-AF-------------------------EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 188 LLLQALTRSNGA---IQKIV-AF-------------------------ENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp HHHHHHHTTCHH---HHHHH-HH-------------------------TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHH---HHHHH-HH-------------------------hccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence 999988764321 22221 11 0344555566665543 667788999999
Q ss_pred HhhhcCCCCCCCChHHHHHHHHHHhhccccCccc----HHHHHH--HHHHHHHHHhcccccCCCCch--hHHHHHHHHHH
Q 001905 789 LLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQS----ILFLSS--LLKRIDRLLQFDRLMPSYNGI--LTISCIRTLTQ 860 (997)
Q Consensus 789 ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~----~~~~~~--~~~ei~r~~~~d~~~psy~~~--vt~~~l~~~~~ 860 (997)
||++|--+.|-|-..-|+..|+.=|. .+.+. ..-+.. .+-+|-|.+-. | .+. -|..|.+++.+
T Consensus 239 LLr~N~sNQ~~FrEt~~i~~L~~LL~---~~~~~~~W~~Qk~~N~~~~L~iIrlLv~----~--~~~~~~t~~nQ~~~~~ 309 (651)
T 3grl_A 239 LLKNNNSNQNFFKEGSYIQRMKPWFE---VGDENSGWSAQKVTNLHLMLQLVRVLVS----P--NNPPGATSSCQKAMFQ 309 (651)
T ss_dssp HHTTCHHHHHHHHHTTCGGGGGGGGC---CCSCSSCCCHHHHHHHHHHHHHHHHHTC----T--TSCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHcCCHHHHHHHhC---CCccccccHHHHHHHHHHHHHHHHHHhC----C--CCCCCCCHHHHHHHHH
Confidence 99985444444444444444432221 11110 011111 22233443322 2 222 35566665554
Q ss_pred HHHHhcCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhcc
Q 001905 861 IALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDL 901 (997)
Q Consensus 861 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~ 901 (997)
+|.+. .+.++.. ..+.+..||.+|+.++=++
T Consensus 310 -----~g~l~--~Ll~ll~---~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 310 -----CGLLQ--QLCTILM---ATGVPADILTETINTVSEV 340 (651)
T ss_dssp -----TTHHH--HHHHHHT---CSSCCHHHHHHHHHHHHHH
T ss_pred -----CCCHH--HHHHHHc---cCCCCHHHHHHHHHHHHHH
Confidence 33322 2233322 2445678888888888774
No 59
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2
Probab=45.77 E-value=1e+02 Score=32.94 Aligned_cols=97 Identities=6% Similarity=0.083 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCC--ccEE-EEC-C------CCcccccccccchhhccccccccccc---chhhhh
Q 001905 278 IHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLA-P------EMAVSSSTFGAAMGIFSSQILYDEKV---IDQAID 344 (997)
Q Consensus 278 ~~~~~~~~~~~l~~~e~~~g~~YP~~k--~~~V-~vp-~------~~~~~~~~~gagL~i~~~~lL~~~~~---~d~~~~ 344 (997)
+..+...+..+.+||.+.|| .=++.- ..++ .|- + ...++ +..| +.+.|.... ..+...
T Consensus 67 avdA~~~~~~t~d~y~~~~g-r~sid~~G~~l~~~Vhyg~~~~~~~y~NA-fWdg-------~~m~fGdGdg~~f~~~~~ 137 (301)
T 1bqb_A 67 GVDANYYAKQTYDYYKNTFG-RESYDNHGSPIVSLTHVNHYGGQDNRNNA-AWIG-------DKMIYGDGDGRTFTNLSG 137 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CCSTTSSCCCEEEEECCCEETTEECTTCE-EECS-------SSEEECCCCSSSBSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeeEEEEEeCCCCCCCCccCc-EEcC-------CEEEEEcCCCcccCCccc
Confidence 34666778899999999999 556642 3332 231 1 11111 1111 122332211 111112
Q ss_pred hHHHHHHHHHHhhhcccccCCCCChh-HHHHHHHHHHHHH
Q 001905 345 TSIKLSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDS 383 (997)
Q Consensus 345 ~~~~iaHElAHQWFG~lVt~~~w~d~-WLnEGfA~Yl~~~ 383 (997)
...+++||++|--.-....+..-.+. =|||||+.++...
T Consensus 138 ~lDVv~HE~tHGVt~~~agl~y~~eSGaLnEs~SDifg~~ 177 (301)
T 1bqb_A 138 ANDVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYF 177 (301)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccceeeeecccceecccCCCcccCCcCchhHHHHHHHhHh
Confidence 34689999999877665544433333 4999999999864
No 60
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=45.71 E-value=50 Score=40.58 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=97.7
Q ss_pred HhHHHhhhccCcchhHHHHHHHHHHHhhccccc------ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHH
Q 001905 691 VNTLNNFLSDSKAFWRVRIEAAYALANTASEET------DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAI 764 (997)
Q Consensus 691 ~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai 764 (997)
+..|...|... -=.||.+||.+|+.++.... +-.|++.|+...++- -+ -+|+.-
T Consensus 497 Vp~LV~LL~s~--s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~-------~~-----------~~k~~A 556 (810)
T 3now_A 497 TTALCALAKTE--SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG-------TE-----------KGKRHA 556 (810)
T ss_dssp HHHHHHHHTCC--CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS-------CH-----------HHHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC-------CH-----------HHHHHH
Confidence 44577777653 46999999999999986432 223578888887641 11 267777
Q ss_pred HHHHhhc-cccC------CCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCcccHHHHHH-----HHHH
Q 001905 765 PHAVAMV-RAAD------NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSS-----LLKR 832 (997)
Q Consensus 765 ~~a~a~~-r~~~------g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~-----~~~e 832 (997)
..||+.+ +..+ +....++...|++||.. | ++..-....+.||+++....+ ...+. .+..
T Consensus 557 a~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~-~------~~~l~~~eAl~AL~NLa~~~d--~~~~~Ii~aG~l~~ 627 (810)
T 3now_A 557 TQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ-D------CTALENFESLMALTNLASMNE--SVRQRIIKEQGVSK 627 (810)
T ss_dssp HHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST-T------SCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHH
T ss_pred HHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC-C------CcHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCCHHH
Confidence 8888865 2222 11123578899999962 2 233333456778887765432 12222 3334
Q ss_pred HHHHHhcccccCCCCchhHHHHHHHHHHHHHH------h---cCCCChhhhhhhhcccCCCCChHHHHHHHHHHhhcccc
Q 001905 833 IDRLLQFDRLMPSYNGILTISCIRTLTQIALK------L---SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (997)
Q Consensus 833 i~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (997)
|..++. |-+--|-.++.+++++|+.. . .|.++ .+..+ ... .-..+|.+|..+|--+..
T Consensus 628 Lv~LL~------s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~--~Lv~L----L~s-~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 628 IEYYLM------EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK--FLALL----CED-EDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHHH------SCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHH--HHHHG----GGC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHc------CCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHH--HHHHH----hcC-CCHHHHHHHHHHHHHHhC
Confidence 444443 33445667777888876420 0 11111 12122 222 225788888888877653
No 61
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=45.21 E-value=26 Score=31.38 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhhhcc
Q 001905 345 TSIKLSFALARQWFGV 360 (997)
Q Consensus 345 ~~~~iaHElAHQWFG~ 360 (997)
...+||||++|-=-++
T Consensus 83 l~aVlaHElgH~~~~h 98 (107)
T 3cqb_A 83 AEAVLAHEVSHIANGD 98 (107)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4558999999975544
No 62
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=43.95 E-value=48 Score=38.19 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=35.3
Q ss_pred ccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001905 666 KDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (997)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (997)
.+.+...|.+|..+|......+.. +...|.+.+.+. -..||.+||.+|+.++.
T Consensus 326 ~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTS 387 (510)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHc
Confidence 455666777888777754322221 334566777665 46899999999998765
No 63
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding, metalloprotease, protease, secreted, zinc, zymogen; HET: LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A* 1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A* 1y3g_E* 2whz_A* 2wi0_A* 1kei_A* 3do0_A* 3do1_A* 3do2_A* 3fb0_A 3fbo_A 3fgd_A* 3flf_A* 3fv4_A* ...
Probab=43.64 E-value=1.1e+02 Score=32.99 Aligned_cols=102 Identities=4% Similarity=-0.009 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCC--CccEE-EEC--CCCcccccccccchhhccc--ccccccccchhhhhhHHH
Q 001905 276 SKIHNTVEFFHNAFSHYETYLDAKFPFG--SYKQV-FLA--PEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIK 348 (997)
Q Consensus 276 ~~~~~~~~~~~~~l~~~e~~~g~~YP~~--k~~~V-~vp--~~~~~~~~~~gagL~i~~~--~lL~~~~~~d~~~~~~~~ 348 (997)
..+..+...+....+||.++|| .=++. -..++ .|- ....++ +..| ...+|.+ ...+.+ ......+
T Consensus 68 ~aavdA~~~~~~t~d~y~~~~g-r~sid~~G~~l~~~VHyg~~y~NA-fW~g-~~m~fGDGdg~~f~~-----~~~slDV 139 (316)
T 3dnz_A 68 APAVDAHYYAGVTYDYYKNVHN-RLSYDGNNAAIRSSVHYSQGYNNA-FWNG-SQMVYGDGDGQTFIP-----LSGGIDV 139 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEESCTTTCCCE-EECS-SCEEECCCCSSSBSC-----GGGCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCceEEEEEecCCCccCc-eEcC-CEEEEeCCCCccccc-----ccccccc
Confidence 4456777888999999999999 55664 13333 232 111122 1111 1222321 111111 1123468
Q ss_pred HHHHHHHhhhcccccCCCCChh-HHHHHHHHHHHHHHH
Q 001905 349 LSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFI 385 (997)
Q Consensus 349 iaHElAHQWFG~lVt~~~w~d~-WLnEGfA~Yl~~~~~ 385 (997)
++||+.|--.-..-....-.+. =|||+|+..+...+-
T Consensus 140 v~HE~tHgvt~~~agL~y~~esGaLNEs~SDifG~~ve 177 (316)
T 3dnz_A 140 VAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVE 177 (316)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeccccccccCCCcccCCccchhHHHHHHHHHHHH
Confidence 9999999876654333322222 499999999986654
No 64
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=42.98 E-value=64 Score=31.54 Aligned_cols=59 Identities=25% Similarity=0.188 Sum_probs=43.5
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001905 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (997)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (997)
.+-++-++.|...|..|+.+|......+.. .+..|.+.|.+. -..||..|+.+|+.++.
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS 125 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHc
Confidence 344555677889999999999875432221 345677888776 47999999999999875
No 65
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=42.40 E-value=3.1e+02 Score=33.19 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=40.5
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCC-chhHHhHHHhhhccCcchhHHHHHHHHHHHhhc
Q 001905 661 INQLEKDGDVVAQAQAIAALEALPHL-SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (997)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~~~~-s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~ 719 (997)
..++ .++|-..|.+|...|++.... ...+...|...+.++..--.||..|+..|.+.-
T Consensus 7 L~~~-~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i 65 (876)
T 1qgr_A 7 LEKT-VSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSL 65 (876)
T ss_dssp HHGG-GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHh-cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Confidence 3444 367888888888888764321 134566788888876556789999999998754
No 66
>4ger_A Gentlyase metalloprotease; metalloproteinase, tissue disaggregation, thermoly protease, hydrolase; HET: LYS; 1.59A {Paenibacillus polymyxa}
Probab=41.46 E-value=1.3e+02 Score=32.17 Aligned_cols=101 Identities=5% Similarity=0.008 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC--ccEE---EECCCCcccccccccchhhccc--ccccccccchhhhhhHHHH
Q 001905 277 KIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV---FLAPEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKL 349 (997)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k--~~~V---~vp~~~~~~~~~~gagL~i~~~--~lL~~~~~~d~~~~~~~~i 349 (997)
.+..+...+.+..+||.+.|| .=++.- +.++ -......++ +..| ...+|.+ ...+.+ ......++
T Consensus 62 aavdA~~~~~~t~d~y~~~~g-rnsid~~G~~l~~~VHyg~~y~NA-fW~g-~~m~fGDGdg~~f~~-----~~~slDVv 133 (304)
T 4ger_A 62 AGVDAHTYAAKTYDYYKAKFG-RNSIDGRGLQLRSTVHYGSRYNNA-FWNG-SQMTYGDGDGSTFIA-----FSGDPDVV 133 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEEEESSSCCCE-EECS-SCEEEECCCSSSBCC-----GGGSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeEEEEEeCCCCccCc-eecC-CEEEEeCCCCccccc-----cccccchh
Confidence 455677788999999999999 556641 3332 122222222 1111 1223321 111111 11234589
Q ss_pred HHHHHHhhhcccccCCCCChh-HHHHHHHHHHHHHHH
Q 001905 350 SFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFI 385 (997)
Q Consensus 350 aHElAHQWFG~lVt~~~w~d~-WLnEGfA~Yl~~~~~ 385 (997)
+|||.|--.-..-....-.+. =|||+|+..+...+-
T Consensus 134 aHEltHGVt~~ta~L~Y~~qsGaLNEs~SDifG~~ve 170 (304)
T 4ger_A 134 GHELTHGVTEYTSNLEYYGESGALNEAFSDVIGNDIQ 170 (304)
T ss_dssp HHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccCCccccCCccchhHHHHHHHHHHhc
Confidence 999999866544322221222 389999999977654
No 67
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=40.98 E-value=1.4e+02 Score=29.69 Aligned_cols=56 Identities=34% Similarity=0.283 Sum_probs=38.3
Q ss_pred HHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001905 663 QLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (997)
Q Consensus 663 QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (997)
++-.+.|...|..|+.+|......+.. +...|.+.+.++. ..||..|+.+|+.++.
T Consensus 135 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 135 KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIAS 199 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCC--HHHHHHHHHHHHHHHc
Confidence 444567777888888888765332211 4556777777643 6899999999998775
No 68
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=40.06 E-value=1.3e+02 Score=38.74 Aligned_cols=207 Identities=16% Similarity=0.150 Sum_probs=105.3
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCC-Cc----hhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccc----------
Q 001905 660 WINQLEKDGDVVAQAQAIAALEALPH-LS----FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD---------- 724 (997)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~-~s----~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~---------- 724 (997)
....| .|++...|..|+..|...-. .+ ..+...|...+.|+.. .||..|+.+|+.++.....
T Consensus 53 Ll~~L-~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~~l~~~~~~~~~~~~ 129 (1230)
T 1u6g_C 53 ILKLL-EDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPASSGSALAAN 129 (1230)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC-----CCTHHH
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCCcccccchHHH
Confidence 33444 48999999999988875311 11 1245567777777654 7899999999988754221
Q ss_pred -ccc-HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC----ChHHHHHHHHHHhhhcCCCCC
Q 001905 725 -WAG-LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----SPREAVEFVLQLLKYNDNNGN 798 (997)
Q Consensus 725 -~~g-~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~----~p~~v~~fll~ll~~NdNs~N 798 (997)
|.. ++.|++.+.. + +| .-++.+-..+++.+=...|. .-+++...|+..|..
T Consensus 130 ~~~~llp~L~~~l~~------~----~~-------~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~------ 186 (1230)
T 1u6g_C 130 VCKKITGRLTSAIAK------Q----ED-------VSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS------ 186 (1230)
T ss_dssp HHHHHHHHHHHHHSC------C----SC-------HHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGC------
T ss_pred HHHHHHHHHHHHHcC------C----Cc-------hHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcC------
Confidence 111 2333333321 0 10 13555555555554322222 235666677777741
Q ss_pred CCChHHHHHHHHHHhhccccCcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCC-C-C-hhhhh
Q 001905 799 PYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGF-I-S-LDQVV 875 (997)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~-~-~-~~~~~ 875 (997)
.+...+...+.||+.+...... .+...++..+-..+.-+.. ++-+. -.+.|+-.+.+. .|. + | ++.+.
T Consensus 187 --~~~~vR~~a~~al~~l~~~~~~-~~~~~~l~~l~~~L~~~~~-~~~r~-~a~~~l~~l~~~----~~~~~~~~l~~l~ 257 (1230)
T 1u6g_C 187 --PRLAVRKRTIIALGHLVMSCGN-IVFVDLIEHLLSELSKNDS-MSTTR-TYIQCIAAISRQ----AGHRIGEYLEKII 257 (1230)
T ss_dssp --SSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCS-SCSCT-THHHHHHHHHHH----SSGGGTTSCTTHH
T ss_pred --CcHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhccCCc-hhHHH-HHHHHHHHHHHH----hHHHHHHHHHHHH
Confidence 1246788888898876432221 2334455555555554433 22221 123444444432 121 1 1 12222
Q ss_pred hhhcccCCCCChHHHHHHHHHHhhccc
Q 001905 876 KLIKPFRDFNTIWQVRVEASRALLDLE 902 (997)
Q Consensus 876 ~~~~~~~~~~~~~~vr~~a~~~l~~~~ 902 (997)
.++..... +.-..||..|+++|-.+.
T Consensus 258 ~~ll~~l~-d~~~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 258 PLVVKFCN-VDDDELREYCIQAFESFV 283 (1230)
T ss_dssp HHHHHHHS-SCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 22222222 223568888888876653
No 69
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=39.48 E-value=44 Score=34.50 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=39.3
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCchhHHhHHHh-hhccCcchhHHHHHHHHHHHhhcc
Q 001905 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNN-FLSDSKAFWRVRIEAAYALANTAS 720 (997)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~-~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (997)
....|-++.--.+|+.|+..|.+.+ ....+-..+.. +..|+ -||||-.+|.++.....
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~~-~~~~~L~~ir~~va~D~--~WrVre~lA~a~~~~~~ 133 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYLS-KDKEILIFMRDEVSKDN--NWRVQEVLAKAFDEFCK 133 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTT-TSHHHHHHHHHTGGGCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcchHHHHHHHHHHHhcc-CcHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHHH
Confidence 3444555555599999999998763 33334444555 34343 57999999999998653
No 70
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=39.07 E-value=57 Score=37.67 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=37.6
Q ss_pred HHHcccCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001905 662 NQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (997)
Q Consensus 662 ~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (997)
.+|-.+.+...|.+|+.+|.....++.. +...|.+.|.+. -..||.+||.+|+.++.
T Consensus 341 ~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 341 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHc
Confidence 3455667778888888888754222221 233466667664 46899999999988764
No 71
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=38.95 E-value=6e+02 Score=30.74 Aligned_cols=54 Identities=20% Similarity=0.099 Sum_probs=38.5
Q ss_pred ccCChHHHHHHHHHHHcCCCCchhHHhHHHhhhcc-CcchhHHHHHHHHHHHhhcc
Q 001905 666 KDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSD-SKAFWRVRIEAAYALANTAS 720 (997)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d-~~~f~~VR~~Aa~aL~~~~~ 720 (997)
.++|-..|.+|-+.|..... .+.+...|...+.+ ...--.||..||..|-+.-.
T Consensus 23 ~s~d~~~r~~Ae~~L~~~~~-~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~ 77 (852)
T 4fdd_A 23 QSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK 77 (852)
T ss_dssp TCSCHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTT
T ss_pred hCcCHHHHHHHHHHHHHHHh-CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Confidence 57788888889888887643 33455666666654 33466999999998876553
No 72
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=38.01 E-value=4.2e+02 Score=29.62 Aligned_cols=70 Identities=14% Similarity=0.021 Sum_probs=46.4
Q ss_pred ccCChHHHHHHHHHHHcC----CCC-----chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccc-------cccccHH
Q 001905 666 KDGDVVAQAQAIAALEAL----PHL-----SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-------TDWAGLL 729 (997)
Q Consensus 666 ~drdv~aq~eAi~~l~~~----~~~-----s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~-------~~~~g~~ 729 (997)
.+.|...|.+|+.+|... +.. ...++..|.+.|.++ -.++|..|+.+|...+... ..-.|++
T Consensus 111 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~ 188 (529)
T 1jdh_A 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence 456677888888888754 111 112455678888764 5899999999999876421 1234677
Q ss_pred HHHHHHHh
Q 001905 730 HLVKFYKS 737 (997)
Q Consensus 730 ~L~~~f~~ 737 (997)
.|+++.+.
T Consensus 189 ~L~~ll~~ 196 (529)
T 1jdh_A 189 ALVNIMRT 196 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777764
No 73
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=37.04 E-value=1.5e+02 Score=31.03 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhh---hhhhcccCCCCChHHHHHHHHHHhhcccccc
Q 001905 851 TISCIRTLTQIALKLSGFISLDQV---VKLIKPFRDFNTIWQVRVEASRALLDLEFHC 905 (997)
Q Consensus 851 t~~~l~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~ 905 (997)
-.+||..+..+- ...|.-|...+ -.+...+.+. -..||-+|+.|++.+..+.
T Consensus 184 R~e~l~~l~~li-~~~G~~~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 184 RSECLLVIEYYI-TNAGISPLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHHHHHHH-HHHCSGGGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCCCccccccchHHHHHHHcCC--CHHHHHHHHHHHHHHHHHh
Confidence 368998888874 44565443222 1111222222 2589999999999976543
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=33.50 E-value=5e+02 Score=28.24 Aligned_cols=216 Identities=15% Similarity=0.133 Sum_probs=111.9
Q ss_pred HcccCChHHHH---HHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCC
Q 001905 664 LEKDGDVVAQA---QAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (997)
Q Consensus 664 L~~drdv~aq~---eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~ 740 (997)
|-+.+|..-+- -++..+.+.+.....+++.|.+=+.++..+ ||.-|.++|+++..++. ++.+.+..++..-
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~--iR~lALRtL~~I~~~~m----~~~l~~~lk~~L~ 149 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDS--YRGPAVRALCQITDSTM----LQAIERYMKQAIV 149 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHH--HHHHHHHHHHHHCCTTT----HHHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHh--HHHHHHHHHhcCCCHHH----HHHHHHHHHHHcC
Confidence 56667776664 444445455555556788898989888765 89999999999998875 5667777766322
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhccccCc
Q 001905 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQ 820 (997)
Q Consensus 741 ~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~ 820 (997)
+ -..|.-++|+..+.-.++ ..|.-+.+|+-++-.-- ++.| ...++..+.+|..+.-
T Consensus 150 d-------------~~pyVRk~A~l~~~kL~~----~~pe~v~~~~~~l~~ll-~d~n----~~V~~~Al~lL~ei~~-- 205 (355)
T 3tjz_B 150 D-------------KVPSVSSSALVSSLHLLK----CSFDVVKRWVNEAQEAA-SSDN----IMVQYHALGLLYHVRK-- 205 (355)
T ss_dssp C-------------SSHHHHHHHHHHHHHHTT----TCHHHHHTTHHHHHHHT-TCSS----HHHHHHHHHHHHHHHT--
T ss_pred C-------------CCHHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHh-cCCC----ccHHHHHHHHHHHHHh--
Confidence 2 234655666666665554 35777777754443211 2333 4566655555554432
Q ss_pred ccHHHHHHHHHHHHHHHhcccccCCCCchhH-HHHHHHHHHHHHHhcCCCChh------hhhhhhcccCCCCChHHHHHH
Q 001905 821 QSILFLSSLLKRIDRLLQFDRLMPSYNGILT-ISCIRTLTQIALKLSGFISLD------QVVKLIKPFRDFNTIWQVRVE 893 (997)
Q Consensus 821 ~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt-~~~l~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vr~~ 893 (997)
.+..-+.+++..+.+. .-.+-+. |--|+.+.+ ..+.| .+..++.+..+. .-.-|-.+
T Consensus 206 ~d~~a~~kLv~~l~~~--------~l~~~~~q~~llr~l~~-------~~~~d~~~~~~~~~~~l~~~L~~-~~~aVvyE 269 (355)
T 3tjz_B 206 NDRLAVSKMISKFTRH--------GLKSPFAYCMMIRVASR-------QLEDEDGSRDSPLFDFIESCLRN-KHEMVVYE 269 (355)
T ss_dssp TCHHHHHHHHHHHHSS--------CCSCHHHHHHHHHHHTC-------C-----------------CCCCC-SSHHHHHH
T ss_pred hchHHHHHHHHHHhcC--------CCcChHHHHHHHHHHHH-------hccccchhhHHHHHHHHHHHHcC-CChHHHHH
Confidence 2222344454444320 1111222 222232222 22222 244455555543 34579999
Q ss_pred HHHHhhccccccCCh----HHHHHHHHHHhccCccchh
Q 001905 894 ASRALLDLEFHCNGI----DSALSLFIKSVEEEPSLRG 927 (997)
Q Consensus 894 a~~~l~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~ 927 (997)
|.++++.+.-...+. ...|+.|+. ++||.+|-
T Consensus 270 a~k~I~~l~~~~~~~~~~a~~~L~~fLs--s~d~niry 305 (355)
T 3tjz_B 270 AASAIVNLPGCSAKELAPAVSVLQLFCS--SPKAALRY 305 (355)
T ss_dssp HHHHHTC-----------CCCTHHHHHH--SSSSSSHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHc--CCCchHHH
Confidence 999999985422211 133444442 46676553
No 75
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=32.39 E-value=5.2e+02 Score=28.05 Aligned_cols=296 Identities=11% Similarity=0.035 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHHHHHcCCCC-chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcc--------------cccccccHHH
Q 001905 666 KDGDVVAQAQAIAALEALPHL-SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS--------------EETDWAGLLH 730 (997)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~-s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~--------------~~~~~~g~~~ 730 (997)
.++|-..|.+|-+.|.+.... ...+...|...+.+...-..||..||..|.+.-. ....-.-...
T Consensus 11 ~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 90 (462)
T 1ibr_B 11 VSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARRE 90 (462)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHH
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCChHHHHHHHH
Q 001905 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALV 810 (997)
Q Consensus 731 L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li 810 (997)
+....-.....++..+ + --..+...|+..-..++.. ++...+|++.+.-.. +|...+...+
T Consensus 91 ik~~ll~~l~~~~~~v-~-----------~~~~~i~~ia~~~~~~~~w-~~ll~~L~~~l~~~~------~~~~~r~~al 151 (462)
T 1ibr_B 91 VKNYVLQTLGTETYRP-S-----------SASQCVAGIACAEIPVNQW-PELIPQLVANVTNPN------STEHMKESTL 151 (462)
T ss_dssp HHHHHHHHTTCCCSSS-C-----------SHHHHHHHHHHHHGGGTCC-TTHHHHHHHHHHCTT------CCHHHHHHHH
T ss_pred HHHHHHHHhCCCCchh-h-----------HHHHHHHHHHHHhcccccc-HHHHHHHHHHhccCC------CCHHHHHHHH
Q ss_pred HHhhcccc---CcccHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCC----hhhhhhhhcccCC
Q 001905 811 QSVGELEF---GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS----LDQVVKLIKPFRD 883 (997)
Q Consensus 811 ~al~~~~~---~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~----~~~~~~~~~~~~~ 883 (997)
.+|+.+.- +..-..+...++..+..+++-++ -..-|-.++++++..+........+ .+.+...+.....
T Consensus 152 ~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (462)
T 1ibr_B 152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE----PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227 (462)
T ss_dssp HHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTC----CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Q ss_pred CCChHHHHHHHHHHhhccc-----cccCChH-HHHHHHHHHhccCccchhhhHHHHhhhccchhc---------------
Q 001905 884 FNTIWQVRVEASRALLDLE-----FHCNGID-SALSLFIKSVEEEPSLRGQVKLGIHAMRICQIK--------------- 942 (997)
Q Consensus 884 ~~~~~~vr~~a~~~l~~~~-----~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 942 (997)
.... .||.+|+++|..+. ....-.. ..+..++..+ .+.....+...+.....++...
T Consensus 228 ~~~~-~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 228 CPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp CSSH-HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q ss_pred cCCCCCCCcCcHHHHHHHHHHhcccccc-------chhhhhhHHHHHHHHh
Q 001905 943 GGSDSNHEVDTVTLVALLNLLESRIAFN-------NVFLRHHLFGILQILA 986 (997)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~lr~~~~~~~~~l~ 986 (997)
........+..+.+-..+-.+....... ++..|..+.+.+..|.
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHH
No 76
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=31.59 E-value=1.3e+02 Score=33.01 Aligned_cols=15 Identities=47% Similarity=0.760 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHhhc
Q 001905 705 WRVRIEAAYALANTA 719 (997)
Q Consensus 705 ~~VR~~Aa~aL~~~~ 719 (997)
..||.+|+.+|++++
T Consensus 332 ~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 332 FRTRKEAAWAITNAT 346 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=30.84 E-value=1.2e+02 Score=30.64 Aligned_cols=60 Identities=22% Similarity=0.135 Sum_probs=40.8
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCC--------CCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 001905 659 MWINQLEKDGDVVAQAQAIAALEALP--------HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (997)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~--------~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (997)
+....|..|.++..+..|+..|...- .....+...|.+.+.|.+ -.||..|+.+|..+..
T Consensus 60 ~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~--~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 60 ALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK--PNVVTALREAIDAIYA 127 (242)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCC--HHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHH
Confidence 45555656999999998888887531 111224456677777764 5799999999887654
No 78
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=27.19 E-value=45 Score=34.76 Aligned_cols=54 Identities=6% Similarity=-0.058 Sum_probs=28.3
Q ss_pred CccEEEECCCCcccccccccchhhcccccccccccchhhhhhHHHHHHHHHHhhhccc
Q 001905 304 SYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVY 361 (997)
Q Consensus 304 k~~~V~vp~~~~~~~~~~gagL~i~~~~lL~~~~~~d~~~~~~~~iaHElAHQWFG~l 361 (997)
.+++.++++...++ +..++|.+.+.+.||-.-+ . .-+...+|+||++|-=-++.
T Consensus 63 ~~~v~v~~~~~~NA-fa~~gg~I~v~~gLl~~l~-~--~~ELaaVLaHElgH~~~~H~ 116 (253)
T 3c37_A 63 DYVFKVVKDDSVNA-FAIPGGRVYVHTGLLKAAD-N--ETELAGVLAHEINHAVARHG 116 (253)
T ss_dssp CCEEEEECCCSCCE-EEETTTEEEEEHHHHHHCS-S--HHHHHHHHHHHHHHHHTTHH
T ss_pred CeEEEEEeCCCCCe-eEcCCCeEEeeHHHHhhCC-C--HHHHHHHHHHHHHHHHCcCH
Confidence 45676776433333 3333344444555542110 1 12345589999999865544
No 79
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=25.39 E-value=2e+02 Score=34.76 Aligned_cols=210 Identities=10% Similarity=0.071 Sum_probs=102.4
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-cccc-HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 001905 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-DWAG-LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHA 767 (997)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~-~~~g-~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~a 767 (997)
+...|...+.+...- .||.+|..+++.++.... .+.. +..++....+..-++ ++-++.+...+
T Consensus 598 l~~~l~~~l~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~--------------~~~vr~~a~~~ 662 (861)
T 2bpt_A 598 LMGLFFRLLEKKDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQV--------------DSPVSITAVGF 662 (861)
T ss_dssp HHHHHHHHHHSTTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT--------------TSHHHHHHHHH
T ss_pred HHHHHHHHHccCCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc--------------cHHHHHHHHHH
Confidence 344455566554321 789999988887764321 1111 222222222211010 11245554455
Q ss_pred HhhccccCCCC----hHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHhhcccc--CcccHHHHHHHHHHHHHHHhccc
Q 001905 768 VAMVRAADNKS----PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF--GQQSILFLSSLLKRIDRLLQFDR 841 (997)
Q Consensus 768 ~a~~r~~~g~~----p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~--~~~~~~~~~~~~~ei~r~~~~d~ 841 (997)
++.+=..-|.. -.++...|++.|+.. | .|.-.+.+.+.+||.+.. +..-..++..++..+.+.+....
T Consensus 663 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~----~--~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~ 736 (861)
T 2bpt_A 663 IADISNSLEEDFRRYSDAMMNVLAQMISNP----N--ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP 736 (861)
T ss_dssp HHHHHHHTGGGGHHHHHHHHHHHHHHHHCT----T--CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhchhccchHHHHHHHHHHHhCCc----c--ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 54332222322 124445556666521 1 123367777788876532 22333567778777777766421
Q ss_pred -----ccCCCCchhHHHHHHHHHHHHHHhcCC----CC-hhhhhhhhcccCCCCC---hHHHHHHHHHHhhccccccCCh
Q 001905 842 -----LMPSYNGILTISCIRTLTQIALKLSGF----IS-LDQVVKLIKPFRDFNT---IWQVRVEASRALLDLEFHCNGI 908 (997)
Q Consensus 842 -----~~psy~~~vt~~~l~~~~~l~~~~~~~----~~-~~~~~~~~~~~~~~~~---~~~vr~~a~~~l~~~~~~~~~~ 908 (997)
=..-|...+..++++++..+...+.+. -| +..++.++........ -..||.+|+.+|-++....+|.
T Consensus 737 ~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 737 ENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 001133445567888887776443321 11 1222232222211110 3689999999999985433222
Q ss_pred H-------HHHHHHHHHhc
Q 001905 909 D-------SALSLFIKSVE 920 (997)
Q Consensus 909 ~-------~~l~~~~~~~~ 920 (997)
. ..+..++..+.
T Consensus 817 ~~~~~~~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 817 SIKQFYGQDWVIDYIKRTR 835 (861)
T ss_dssp TTGGGTTCHHHHHHHHHHH
T ss_pred hHHHHHhcHHHHHHHHHHh
Confidence 1 34566666665
No 80
>3nqx_A MCP-02, secreted metalloprotease MCP02; zinc metalloprotease, alpha/beta protein, hydrolase; 1.70A {Pseudoalteromonas SP} PDB: 3nqy_B 3nqz_B
Probab=23.63 E-value=4e+02 Score=28.38 Aligned_cols=103 Identities=10% Similarity=0.097 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCccEE-EE--CCCCcccccccccchhhccc--ccccccccchhhhhhHHHHHH
Q 001905 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV-FL--APEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKLSF 351 (997)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V-~v--p~~~~~~~~~~gagL~i~~~--~lL~~~~~~d~~~~~~~~iaH 351 (997)
.+..+.-.+....+||.++|| .=|+. .+++ .| .....++ +..|. -.+|.+ ...++ .....+++|
T Consensus 73 ~~~DAhy~a~~t~d~y~~~~g-r~~id-~~l~~~VHyg~~y~NA-fWdg~-~m~fGDG~~~~~~-------~~slDVv~H 141 (306)
T 3nqx_A 73 PLNDAHFFGNVIFNMYNDWLG-TAPLS-FQLQMRVHYSSNYENA-FWDGS-AMTFGDGQNTFYP-------LVSLDVSAH 141 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-SCSSS-SCEEEEEEESSSCCCE-EECSS-CEEEECCCSSBSC-------SCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcC-CCCCC-CceEEEEecCCCccCc-cccCC-EEEEeCCCccccc-------ccccchhhh
Confidence 355666678889999999999 55665 2332 22 1111222 11121 222321 11111 123458999
Q ss_pred HHHHhhhcccccCCCCC-hhHHHHHHHHHHHHHHHHHHhC
Q 001905 352 ALARQWFGVYITPELPN-DEWLLDGLAGFLTDSFIKKFLG 390 (997)
Q Consensus 352 ElAHQWFG~lVt~~~w~-d~WLnEGfA~Yl~~~~~~~~~G 390 (997)
|+.|--.-..-.+..-. --=|||||+..+...+-....+
T Consensus 142 E~tHGvt~~~a~l~y~~esGaLnEs~SDifg~~ve~~~~~ 181 (306)
T 3nqx_A 142 EVSHGFTEQNSGLIYNGKPGGLNEAFSDMAGEAAEFYMKG 181 (306)
T ss_dssp HHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccccccCCCCCccCCCCCcccchHHHHHHHHHHHHhcC
Confidence 99998765432222211 1259999999998765433333
Done!