Query 001906
Match_columns 997
No_of_seqs 563 out of 4109
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 12:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 100.0 3E-153 6E-158 1305.6 74.2 897 53-988 1-907 (951)
2 COG2217 ZntA Cation transport 100.0 8E-133 2E-137 1171.3 81.2 706 203-983 3-710 (713)
3 PRK10671 copA copper exporting 100.0 2E-120 3E-125 1128.3 93.1 811 46-987 3-834 (834)
4 PRK11033 zntA zinc/cadmium/mer 100.0 4E-107 9E-112 986.9 80.8 687 201-984 52-740 (741)
5 TIGR01511 ATPase-IB1_Cu copper 100.0 4.8E-98 1E-102 884.8 69.4 561 346-962 1-562 (562)
6 TIGR01525 ATPase-IB_hvy heavy 100.0 4.8E-90 1E-94 820.0 69.0 550 365-980 1-556 (556)
7 TIGR01512 ATPase-IB2_Cd heavy 100.0 3.1E-90 6.8E-95 815.9 63.9 534 365-982 1-536 (536)
8 TIGR01647 ATPase-IIIA_H plasma 100.0 2.2E-86 4.7E-91 808.6 65.4 527 400-963 57-631 (755)
9 PRK14010 potassium-transportin 100.0 2.3E-84 4.9E-89 762.5 65.3 498 404-940 72-578 (673)
10 PRK01122 potassium-transportin 100.0 2.9E-83 6.2E-88 753.9 69.0 501 400-936 68-578 (679)
11 PRK10517 magnesium-transportin 100.0 1.2E-82 2.5E-87 784.0 62.5 513 400-944 124-716 (902)
12 TIGR01524 ATPase-IIIB_Mg magne 100.0 8.7E-82 1.9E-86 777.5 67.0 511 400-943 90-680 (867)
13 TIGR01497 kdpB K+-transporting 100.0 6.6E-81 1.4E-85 731.9 66.5 508 396-939 63-582 (675)
14 PRK15122 magnesium-transportin 100.0 2.1E-81 4.6E-86 774.3 65.5 515 399-942 112-714 (903)
15 TIGR01517 ATPase-IIB_Ca plasma 100.0 6.7E-79 1.4E-83 761.5 65.9 564 396-982 127-783 (941)
16 TIGR01522 ATPase-IIA2_Ca golgi 100.0 6.6E-79 1.4E-83 757.1 62.4 538 408-982 90-732 (884)
17 KOG0202 Ca2+ transporting ATPa 100.0 1.4E-78 3E-83 683.4 43.4 560 404-981 84-791 (972)
18 TIGR01106 ATPase-IIC_X-K sodiu 100.0 5.9E-75 1.3E-79 727.5 66.6 551 397-982 103-798 (997)
19 COG0474 MgtA Cation transport 100.0 3.6E-76 7.7E-81 728.9 50.3 547 406-983 111-755 (917)
20 TIGR01523 ATPase-IID_K-Na pota 100.0 2.6E-74 5.6E-79 718.6 66.8 562 400-982 83-865 (1053)
21 TIGR01494 ATPase_P-type ATPase 100.0 2.2E-75 4.7E-80 688.6 53.8 476 405-947 3-483 (499)
22 KOG0204 Calcium transporting A 100.0 1.1E-76 2.5E-81 666.5 38.8 607 348-988 143-858 (1034)
23 TIGR01116 ATPase-IIA1_Ca sarco 100.0 6.7E-74 1.5E-78 713.6 65.3 573 396-982 35-744 (917)
24 TIGR01657 P-ATPase-V P-type AT 100.0 7.8E-73 1.7E-77 713.1 58.0 560 396-982 191-911 (1054)
25 KOG0208 Cation transport ATPas 100.0 8.8E-65 1.9E-69 578.7 44.4 551 368-945 189-930 (1140)
26 KOG0203 Na+/K+ ATPase, alpha s 100.0 8.3E-65 1.8E-69 570.3 17.0 558 397-990 125-827 (1019)
27 TIGR01652 ATPase-Plipid phosph 100.0 1.1E-60 2.5E-65 604.9 51.5 567 397-981 53-884 (1057)
28 COG2216 KdpB High-affinity K+ 100.0 5.9E-61 1.3E-65 512.6 40.6 492 401-925 69-569 (681)
29 KOG0205 Plasma membrane H+-tra 100.0 1.9E-61 4.1E-66 526.9 32.4 511 392-939 92-658 (942)
30 PLN03190 aminophospholipid tra 100.0 1E-54 2.3E-59 543.4 56.3 563 376-954 115-962 (1178)
31 KOG0209 P-type ATPase [Inorgan 100.0 2.7E-52 5.8E-57 465.7 27.9 477 394-895 213-836 (1160)
32 KOG0210 P-type ATPase [Inorgan 100.0 2.3E-47 4.9E-52 418.7 31.8 548 395-981 129-897 (1051)
33 KOG0206 P-type ATPase [General 100.0 1.7E-42 3.8E-47 417.6 28.9 554 376-945 60-874 (1151)
34 PF00122 E1-E2_ATPase: E1-E2 A 100.0 2.4E-33 5.2E-38 298.2 23.4 223 403-642 1-230 (230)
35 PF00702 Hydrolase: haloacid d 99.9 2.4E-27 5.1E-32 249.7 13.1 209 646-885 1-215 (215)
36 COG4087 Soluble P-type ATPase 99.6 4E-15 8.7E-20 132.7 13.2 125 790-917 17-146 (152)
37 KOG0207 Cation transport ATPas 99.5 6.9E-14 1.5E-18 162.9 14.0 145 47-196 70-214 (951)
38 PRK10671 copA copper exporting 99.5 5.9E-11 1.3E-15 148.8 35.4 128 129-264 4-158 (834)
39 PF00403 HMA: Heavy-metal-asso 99.2 8.1E-11 1.7E-15 96.7 7.6 62 131-192 1-62 (62)
40 COG1778 Low specificity phosph 99.1 1.7E-10 3.8E-15 107.4 9.7 115 811-927 43-165 (170)
41 COG2608 CopZ Copper chaperone 99.1 1.8E-10 3.8E-15 96.7 8.5 69 45-113 1-69 (71)
42 PF00403 HMA: Heavy-metal-asso 99.1 1.8E-10 3.9E-15 94.7 8.2 62 49-110 1-62 (62)
43 PRK11133 serB phosphoserine ph 99.1 3.8E-10 8.3E-15 124.2 12.4 115 803-918 181-316 (322)
44 TIGR02137 HSK-PSP phosphoserin 99.1 4E-10 8.8E-15 116.2 11.0 116 803-920 68-198 (203)
45 PRK10513 sugar phosphate phosp 99.1 5.9E-10 1.3E-14 121.7 12.9 132 784-918 4-265 (270)
46 TIGR01670 YrbI-phosphatas 3-de 99.1 1.2E-09 2.6E-14 107.9 12.3 105 811-917 36-145 (154)
47 PRK01158 phosphoglycolate phos 99.1 1.2E-09 2.5E-14 116.3 12.9 132 784-918 4-226 (230)
48 PRK15126 thiamin pyrimidine py 99.0 9.6E-10 2.1E-14 120.1 11.7 132 784-918 3-259 (272)
49 PRK10976 putative hydrolase; P 99.0 1.2E-09 2.7E-14 118.8 12.5 132 784-918 3-261 (266)
50 COG2608 CopZ Copper chaperone 99.0 6.9E-10 1.5E-14 93.1 7.8 67 129-195 3-69 (71)
51 COG0561 Cof Predicted hydrolas 99.0 2.1E-09 4.5E-14 116.9 13.6 134 783-919 3-259 (264)
52 TIGR01487 SPP-like sucrose-pho 99.0 1E-09 2.2E-14 115.3 10.9 130 785-917 3-215 (215)
53 TIGR02726 phenyl_P_delta pheny 99.0 1.7E-09 3.6E-14 107.5 10.3 103 810-912 41-145 (169)
54 TIGR01482 SPP-subfamily Sucros 98.9 4.6E-09 1E-13 111.3 11.3 128 788-918 3-222 (225)
55 PRK09484 3-deoxy-D-manno-octul 98.9 6.8E-09 1.5E-13 105.7 11.3 139 781-921 19-172 (183)
56 PRK10530 pyridoxal phosphate ( 98.9 1.6E-08 3.5E-13 110.5 14.3 132 784-918 4-268 (272)
57 PLN02887 hydrolase family prot 98.9 8.2E-09 1.8E-13 121.6 12.6 134 782-918 307-576 (580)
58 TIGR00338 serB phosphoserine p 98.9 6.3E-09 1.4E-13 109.8 10.4 113 803-916 85-218 (219)
59 PF08282 Hydrolase_3: haloacid 98.9 7.2E-09 1.6E-13 111.6 10.6 126 789-917 4-254 (254)
60 COG0560 SerB Phosphoserine pho 98.8 1.9E-08 4.2E-13 104.2 10.0 103 802-905 76-199 (212)
61 TIGR00099 Cof-subfamily Cof su 98.7 4.2E-08 9E-13 106.2 10.8 128 787-917 3-256 (256)
62 PRK13582 thrH phosphoserine ph 98.7 5.4E-08 1.2E-12 101.5 10.8 113 803-918 68-196 (205)
63 PRK03669 mannosyl-3-phosphogly 98.6 2.9E-07 6.2E-12 100.4 12.8 59 782-843 6-64 (271)
64 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.5 3.3E-07 7.2E-12 95.2 10.1 100 803-902 80-200 (201)
65 PRK00192 mannosyl-3-phosphogly 98.5 7.4E-07 1.6E-11 97.3 12.8 133 783-918 4-267 (273)
66 COG0546 Gph Predicted phosphat 98.5 4.3E-07 9.3E-12 95.6 10.3 116 801-918 87-218 (220)
67 PLN02954 phosphoserine phospha 98.5 1.1E-06 2.5E-11 92.9 12.7 112 803-916 84-222 (224)
68 KOG1615 Phosphoserine phosphat 98.5 2E-07 4.4E-12 90.1 6.0 90 802-891 87-199 (227)
69 TIGR01486 HAD-SF-IIB-MPGP mann 98.5 9.8E-07 2.1E-11 95.4 11.7 53 866-918 195-253 (256)
70 TIGR01454 AHBA_synth_RP 3-amin 98.4 1.8E-06 3.9E-11 90.0 10.5 114 802-917 74-203 (205)
71 TIGR02471 sucr_syn_bact_C sucr 98.4 2.1E-06 4.5E-11 91.7 10.8 65 854-918 160-232 (236)
72 TIGR03333 salvage_mtnX 2-hydro 98.3 4.2E-06 9.1E-11 87.8 11.6 117 802-918 69-209 (214)
73 PRK13222 phosphoglycolate phos 98.3 3.3E-06 7.1E-11 89.5 10.4 117 802-920 92-224 (226)
74 PRK09552 mtnX 2-hydroxy-3-keto 98.2 3.8E-06 8.1E-11 88.5 9.6 113 803-918 74-213 (219)
75 TIGR01489 DKMTPPase-SF 2,3-dik 98.2 2.9E-06 6.2E-11 87.0 8.6 88 802-889 71-186 (188)
76 TIGR01485 SPP_plant-cyano sucr 98.2 8.6E-06 1.9E-10 87.6 11.7 133 786-918 4-244 (249)
77 PRK13288 pyrophosphatase PpaX; 98.2 6E-06 1.3E-10 86.7 10.2 113 803-917 82-210 (214)
78 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.2 7.2E-06 1.6E-10 85.2 9.6 92 801-892 85-198 (202)
79 TIGR01488 HAD-SF-IB Haloacid D 98.2 3.4E-06 7.5E-11 85.5 7.1 81 804-884 74-177 (177)
80 PRK06769 hypothetical protein; 98.1 8.2E-06 1.8E-10 82.2 8.6 133 782-916 3-170 (173)
81 PRK10187 trehalose-6-phosphate 98.1 1.5E-05 3.2E-10 86.3 11.0 130 783-918 14-241 (266)
82 PF12710 HAD: haloacid dehalog 98.1 7E-06 1.5E-10 84.4 8.0 77 806-882 92-192 (192)
83 PRK13225 phosphoglycolate phos 98.1 2E-05 4.3E-10 85.4 11.2 113 803-917 142-267 (273)
84 TIGR01449 PGP_bact 2-phosphogl 98.1 9.8E-06 2.1E-10 85.0 8.6 112 803-916 85-212 (213)
85 PRK13223 phosphoglycolate phos 98.0 1.9E-05 4E-10 86.0 10.1 115 802-918 100-230 (272)
86 PRK08238 hypothetical protein; 98.0 8.5E-05 1.8E-09 86.5 16.0 118 803-921 72-199 (479)
87 PRK13226 phosphoglycolate phos 98.0 2.3E-05 5.1E-10 83.1 9.8 114 803-918 95-225 (229)
88 TIGR01422 phosphonatase phosph 97.9 3.3E-05 7.2E-10 83.3 9.6 113 803-917 99-252 (253)
89 PRK10826 2-deoxyglucose-6-phos 97.9 2.3E-05 5.1E-10 82.7 8.2 112 802-915 91-217 (222)
90 PLN02382 probable sucrose-phos 97.9 7.8E-05 1.7E-09 85.6 12.3 130 786-918 12-257 (413)
91 COG2217 ZntA Cation transport 97.9 2.2E-05 4.7E-10 94.6 7.9 67 46-113 2-69 (713)
92 PLN02770 haloacid dehalogenase 97.8 7.4E-05 1.6E-09 80.3 10.3 108 803-912 108-230 (248)
93 cd01427 HAD_like Haloacid deha 97.8 7.2E-05 1.6E-09 71.7 8.3 90 800-889 21-138 (139)
94 PRK06698 bifunctional 5'-methy 97.8 7.8E-05 1.7E-09 87.7 9.9 116 803-920 330-456 (459)
95 PLN03243 haloacid dehalogenase 97.8 0.0001 2.2E-09 79.4 9.9 111 803-915 109-232 (260)
96 PRK13478 phosphonoacetaldehyde 97.8 0.00011 2.5E-09 79.8 10.2 114 803-918 101-255 (267)
97 COG2179 Predicted hydrolase of 97.7 0.00025 5.4E-09 67.9 10.2 111 775-887 20-133 (175)
98 PRK12702 mannosyl-3-phosphogly 97.7 0.00035 7.6E-09 74.4 12.1 57 784-843 2-58 (302)
99 TIGR03351 PhnX-like phosphonat 97.7 0.00013 2.9E-09 76.8 9.0 114 802-917 86-219 (220)
100 PRK11033 zntA zinc/cadmium/mer 97.7 0.00013 2.8E-09 90.3 9.8 95 10-112 23-117 (741)
101 TIGR01668 YqeG_hyp_ppase HAD s 97.7 0.00026 5.7E-09 71.1 10.1 108 778-887 20-131 (170)
102 TIGR01544 HAD-SF-IE haloacid d 97.6 0.0005 1.1E-08 73.5 12.2 116 802-917 120-273 (277)
103 PTZ00174 phosphomannomutase; P 97.6 0.00031 6.7E-09 75.4 10.8 53 783-838 5-57 (247)
104 PLN02575 haloacid dehalogenase 97.6 0.00019 4.1E-09 80.3 9.4 109 803-913 216-337 (381)
105 PRK14502 bifunctional mannosyl 97.6 0.00027 5.8E-09 83.6 10.3 58 782-842 415-472 (694)
106 TIGR01672 AphA HAD superfamily 97.6 0.00022 4.8E-09 75.0 8.6 88 803-891 114-213 (237)
107 PRK14501 putative bifunctional 97.6 0.00055 1.2E-08 85.2 13.3 143 770-918 479-721 (726)
108 TIGR01662 HAD-SF-IIIA HAD-supe 97.5 0.00057 1.2E-08 65.5 9.9 103 785-887 2-126 (132)
109 TIGR02461 osmo_MPG_phos mannos 97.5 0.00061 1.3E-08 71.8 10.8 53 787-843 3-55 (225)
110 TIGR02253 CTE7 HAD superfamily 97.5 0.00026 5.6E-09 74.6 8.0 89 803-891 94-195 (221)
111 TIGR00003 copper ion binding p 97.5 0.00065 1.4E-08 54.9 8.6 67 45-111 1-67 (68)
112 PRK08942 D,D-heptose 1,7-bisph 97.4 0.00079 1.7E-08 68.5 10.3 114 803-918 29-177 (181)
113 PRK14988 GMP/IMP nucleotidase; 97.4 0.00026 5.7E-09 74.7 6.8 86 802-887 92-188 (224)
114 PRK11009 aphA acid phosphatase 97.4 0.00042 9E-09 72.9 8.2 86 802-891 113-213 (237)
115 PRK11590 hypothetical protein; 97.4 0.00099 2.2E-08 69.6 10.6 91 803-893 95-204 (211)
116 PRK11587 putative phosphatase; 97.4 0.00071 1.5E-08 71.2 9.3 109 803-913 83-203 (218)
117 TIGR01484 HAD-SF-IIB HAD-super 97.3 0.00065 1.4E-08 70.6 8.7 54 786-842 2-56 (204)
118 TIGR01548 HAD-SF-IA-hyp1 haloa 97.3 0.00036 7.8E-09 72.1 6.7 84 801-884 104-197 (197)
119 TIGR01545 YfhB_g-proteo haloac 97.3 0.0012 2.5E-08 68.9 10.1 90 803-892 94-202 (210)
120 PLN02779 haloacid dehalogenase 97.3 0.00064 1.4E-08 74.5 8.5 109 803-913 144-268 (286)
121 TIGR02254 YjjG/YfnB HAD superf 97.3 0.00055 1.2E-08 72.3 7.5 111 803-916 97-223 (224)
122 PRK09449 dUMP phosphatase; Pro 97.3 0.0008 1.7E-08 71.1 8.3 112 803-917 95-222 (224)
123 PLN02940 riboflavin kinase 97.2 0.00057 1.2E-08 78.0 7.5 108 803-912 93-215 (382)
124 PHA02530 pseT polynucleotide k 97.2 0.00076 1.7E-08 74.8 8.1 88 800-887 184-291 (300)
125 TIGR00003 copper ion binding p 97.2 0.0013 2.7E-08 53.2 7.4 64 130-193 4-67 (68)
126 TIGR01428 HAD_type_II 2-haloal 97.2 0.00089 1.9E-08 69.2 7.8 86 803-888 92-188 (198)
127 PLN02580 trehalose-phosphatase 97.1 0.0041 8.9E-08 69.7 12.4 62 775-837 111-174 (384)
128 COG4359 Uncharacterized conser 97.1 0.001 2.2E-08 64.4 6.4 88 803-890 73-184 (220)
129 TIGR01685 MDP-1 magnesium-depe 97.1 0.0013 2.8E-08 65.8 7.3 92 799-890 41-155 (174)
130 TIGR00213 GmhB_yaeD D,D-heptos 97.0 0.0021 4.5E-08 65.1 8.5 109 804-914 27-175 (176)
131 TIGR01990 bPGM beta-phosphoglu 97.0 0.001 2.2E-08 67.9 5.8 83 803-887 87-180 (185)
132 COG4030 Uncharacterized protei 97.0 0.0019 4.2E-08 64.4 7.2 116 803-919 83-263 (315)
133 TIGR02009 PGMB-YQAB-SF beta-ph 96.9 0.0011 2.4E-08 67.6 5.4 84 802-887 87-181 (185)
134 TIGR01664 DNA-3'-Pase DNA 3'-p 96.9 0.005 1.1E-07 61.5 9.7 106 783-888 13-158 (166)
135 PLN02957 copper, zinc superoxi 96.9 0.0034 7.5E-08 66.4 8.8 67 46-116 6-72 (238)
136 KOG4383 Uncharacterized conser 96.9 0.013 2.8E-07 67.1 13.3 150 792-941 815-1100(1354)
137 PF13419 HAD_2: Haloacid dehal 96.8 0.001 2.2E-08 66.9 4.1 87 801-887 75-172 (176)
138 TIGR01656 Histidinol-ppas hist 96.8 0.0025 5.3E-08 62.4 6.7 86 803-888 27-141 (147)
139 TIGR01509 HAD-SF-IA-v3 haloaci 96.8 0.0025 5.5E-08 64.7 7.1 84 803-887 85-179 (183)
140 PLN02811 hydrolase 96.8 0.0037 7.9E-08 65.9 8.4 104 802-905 77-200 (220)
141 KOG4656 Copper chaperone for s 96.8 0.0035 7.5E-08 61.5 7.2 66 44-113 5-70 (247)
142 PLN02957 copper, zinc superoxi 96.8 0.0039 8.5E-08 66.0 8.4 67 129-199 7-73 (238)
143 TIGR00685 T6PP trehalose-phosp 96.8 0.0048 1E-07 66.1 9.1 62 853-918 167-240 (244)
144 TIGR01681 HAD-SF-IIIC HAD-supe 96.8 0.0044 9.6E-08 59.0 7.6 81 803-883 29-126 (128)
145 PLN03017 trehalose-phosphatase 96.7 0.02 4.3E-07 63.7 13.1 59 779-838 107-167 (366)
146 TIGR02252 DREG-2 REG-2-like, H 96.7 0.0029 6.4E-08 65.6 6.4 84 803-887 105-200 (203)
147 PF05116 S6PP: Sucrose-6F-phos 96.7 0.0057 1.2E-07 65.5 8.5 66 853-918 165-243 (247)
148 PLN02205 alpha,alpha-trehalose 96.6 0.013 2.8E-07 73.3 12.5 69 771-839 584-653 (854)
149 TIGR01686 FkbH FkbH-like domai 96.6 0.0055 1.2E-07 68.4 8.2 107 784-890 4-128 (320)
150 KOG4656 Copper chaperone for s 96.6 0.0046 1E-07 60.6 6.2 63 129-195 8-70 (247)
151 TIGR01261 hisB_Nterm histidino 96.5 0.0062 1.3E-07 60.4 6.7 87 803-889 29-144 (161)
152 KOG1603 Copper chaperone [Inor 96.5 0.0072 1.6E-07 51.1 6.1 53 135-190 11-63 (73)
153 PRK05446 imidazole glycerol-ph 96.4 0.011 2.3E-07 66.1 9.0 88 802-889 29-145 (354)
154 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.4 0.02 4.4E-07 61.2 10.8 100 783-886 8-116 (242)
155 TIGR01691 enolase-ppase 2,3-di 96.4 0.013 2.9E-07 61.2 8.7 90 800-889 92-193 (220)
156 TIGR01549 HAD-SF-IA-v1 haloaci 96.3 0.0075 1.6E-07 59.4 6.3 81 803-885 64-154 (154)
157 PF09419 PGP_phosphatase: Mito 96.3 0.021 4.5E-07 56.4 9.1 106 778-885 36-157 (168)
158 TIGR02463 MPGP_rel mannosyl-3- 96.3 0.0077 1.7E-07 63.4 6.5 61 830-890 150-220 (221)
159 KOG1603 Copper chaperone [Inor 96.2 0.017 3.7E-07 48.8 7.1 56 50-108 8-63 (73)
160 PF06888 Put_Phosphatase: Puta 96.1 0.015 3.3E-07 60.8 7.5 78 803-880 71-184 (234)
161 PLN02919 haloacid dehalogenase 96.1 0.015 3.1E-07 75.1 8.8 109 803-913 161-285 (1057)
162 smart00775 LNS2 LNS2 domain. T 96.1 0.038 8.3E-07 54.5 9.7 87 801-887 25-141 (157)
163 smart00577 CPDc catalytic doma 96.0 0.0068 1.5E-07 59.4 4.1 89 801-890 43-140 (148)
164 PRK10444 UMP phosphatase; Prov 95.9 0.042 9.2E-07 58.7 9.8 47 796-842 10-59 (248)
165 PRK10563 6-phosphogluconate ph 95.9 0.0081 1.8E-07 63.3 4.3 86 802-890 87-184 (221)
166 TIGR02247 HAD-1A3-hyp Epoxide 95.7 0.016 3.5E-07 60.5 5.7 86 802-887 93-191 (211)
167 PRK09456 ?-D-glucose-1-phospha 95.7 0.025 5.4E-07 58.5 7.0 85 803-887 84-180 (199)
168 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.6 0.085 1.9E-06 56.9 11.1 55 785-843 3-64 (257)
169 TIGR01533 lipo_e_P4 5'-nucleot 95.6 0.049 1.1E-06 58.4 9.0 81 801-881 116-204 (266)
170 COG3769 Predicted hydrolase (H 95.6 0.073 1.6E-06 53.5 9.3 56 784-843 8-63 (274)
171 PRK10725 fructose-1-P/6-phosph 95.3 0.031 6.7E-07 57.1 6.0 82 804-887 89-181 (188)
172 PLN02151 trehalose-phosphatase 95.2 0.16 3.5E-06 56.4 11.6 58 780-838 95-154 (354)
173 TIGR01993 Pyr-5-nucltdase pyri 95.2 0.047 1E-06 55.6 6.9 83 803-888 84-181 (184)
174 PRK10748 flavin mononucleotide 95.1 0.037 8E-07 59.0 6.3 106 803-916 113-237 (238)
175 PHA02597 30.2 hypothetical pro 94.9 0.05 1.1E-06 56.1 6.3 83 803-887 74-169 (197)
176 TIGR01457 HAD-SF-IIA-hyp2 HAD- 94.8 0.19 4E-06 54.0 10.6 56 784-843 2-60 (249)
177 COG1011 Predicted hydrolase (H 94.3 0.2 4.3E-06 52.8 9.3 114 802-918 98-227 (229)
178 TIGR01675 plant-AP plant acid 94.1 0.27 5.9E-06 51.3 9.5 79 801-879 118-210 (229)
179 COG0637 Predicted phosphatase/ 94.1 0.18 3.8E-06 53.1 8.3 87 801-887 84-181 (221)
180 KOG3120 Predicted haloacid deh 94.1 0.15 3.3E-06 51.3 7.1 89 802-890 83-208 (256)
181 PF13344 Hydrolase_6: Haloacid 93.8 0.054 1.2E-06 49.1 3.2 85 798-885 9-99 (101)
182 PLN02645 phosphoglycolate phos 93.6 0.11 2.3E-06 57.8 5.7 105 782-891 27-137 (311)
183 PF00873 ACR_tran: AcrB/AcrD/A 92.2 1.4 2.9E-05 57.7 13.9 202 44-248 41-276 (1021)
184 TIGR01452 PGP_euk phosphoglyco 91.9 1.4 3.1E-05 48.1 11.6 100 784-889 3-108 (279)
185 COG0841 AcrB Cation/multidrug 91.2 37 0.00081 43.9 24.5 146 46-192 44-212 (1009)
186 KOG3040 Predicted sugar phosph 91.0 0.73 1.6E-05 46.1 7.1 51 793-843 13-66 (262)
187 TIGR01684 viral_ppase viral ph 91.0 0.5 1.1E-05 50.8 6.5 60 784-846 127-189 (301)
188 PLN02177 glycerol-3-phosphate 90.9 0.81 1.8E-05 53.8 8.9 143 804-964 111-277 (497)
189 TIGR02052 MerP mercuric transp 89.7 1.6 3.4E-05 37.9 7.9 64 131-194 26-89 (92)
190 TIGR01493 HAD-SF-IA-v2 Haloaci 89.6 0.26 5.6E-06 49.6 3.0 75 803-884 90-175 (175)
191 TIGR02052 MerP mercuric transp 89.4 2.3 5E-05 36.8 8.7 65 47-111 24-88 (92)
192 KOG3085 Predicted hydrolase (H 88.8 1 2.2E-05 47.1 6.6 95 804-899 114-221 (237)
193 TIGR02251 HIF-SF_euk Dullard-l 88.2 0.46 9.9E-06 47.2 3.5 89 800-889 39-136 (162)
194 PHA03398 viral phosphatase sup 87.7 1.2 2.7E-05 47.9 6.5 60 784-846 129-191 (303)
195 PF03767 Acid_phosphat_B: HAD 86.9 0.55 1.2E-05 49.5 3.4 78 803-880 115-207 (229)
196 COG3700 AphA Acid phosphatase 86.4 1.1 2.4E-05 43.7 4.7 86 804-890 115-210 (237)
197 TIGR01663 PNK-3'Pase polynucle 86.3 1.3 2.9E-05 52.3 6.4 81 804-884 198-303 (526)
198 PF08235 LNS2: LNS2 (Lipin/Ned 86.2 3.6 7.7E-05 40.2 8.2 87 801-887 25-141 (157)
199 PF02358 Trehalose_PPase: Treh 86.0 1.7 3.7E-05 46.1 6.7 55 788-842 2-59 (235)
200 TIGR02244 HAD-IG-Ncltidse HAD 85.9 1.5 3.2E-05 48.9 6.2 82 805-886 186-317 (343)
201 TIGR01452 PGP_euk phosphoglyco 84.9 4.4 9.5E-05 44.3 9.4 83 804-887 144-242 (279)
202 TIGR02463 MPGP_rel mannosyl-3- 84.9 1.5 3.3E-05 45.9 5.6 52 788-843 4-56 (221)
203 COG1877 OtsB Trehalose-6-phosp 84.8 9.1 0.0002 41.1 11.3 66 777-842 12-80 (266)
204 COG0647 NagD Predicted sugar p 84.8 6.4 0.00014 42.3 10.2 109 795-909 16-130 (269)
205 PF13242 Hydrolase_like: HAD-h 83.9 1.3 2.7E-05 37.6 3.6 56 855-912 11-74 (75)
206 PF12689 Acid_PPase: Acid Phos 83.4 2.4 5.3E-05 42.1 5.9 81 803-883 45-142 (169)
207 PRK14054 methionine sulfoxide 82.6 2.2 4.7E-05 42.5 5.1 49 140-188 10-77 (172)
208 TIGR01680 Veg_Stor_Prot vegeta 82.3 8.3 0.00018 41.2 9.6 79 801-879 143-236 (275)
209 COG0241 HisB Histidinol phosph 81.8 6 0.00013 39.7 7.9 84 804-887 32-144 (181)
210 TIGR00915 2A0602 The (Largely 79.6 1E+02 0.0023 40.4 20.4 145 43-189 40-210 (1044)
211 PRK10555 aminoglycoside/multid 79.0 87 0.0019 41.1 19.4 144 44-189 41-210 (1037)
212 PTZ00445 p36-lilke protein; Pr 78.8 5.4 0.00012 40.8 6.5 119 769-887 29-200 (219)
213 PRK10614 multidrug efflux syst 78.5 2.3E+02 0.005 37.2 23.6 146 42-189 41-211 (1025)
214 PRK05528 methionine sulfoxide 78.0 4.2 9E-05 39.8 5.3 49 140-188 8-70 (156)
215 PRK15127 multidrug efflux syst 77.6 1.2E+02 0.0026 39.8 20.1 143 45-189 42-210 (1049)
216 PF05822 UMPH-1: Pyrimidine 5' 77.2 12 0.00025 39.6 8.7 115 802-917 89-241 (246)
217 PRK10503 multidrug efflux syst 76.6 1E+02 0.0022 40.5 18.9 146 43-189 51-220 (1040)
218 PRK09577 multidrug efflux prot 76.4 1.3E+02 0.0028 39.5 20.0 148 44-192 41-212 (1032)
219 cd00371 HMA Heavy-metal-associ 76.3 13 0.00029 26.7 7.1 57 134-191 4-60 (63)
220 PLN03063 alpha,alpha-trehalose 76.3 41 0.0009 42.5 14.8 71 771-841 495-571 (797)
221 cd00371 HMA Heavy-metal-associ 74.3 18 0.00039 25.9 7.4 41 51-91 3-43 (63)
222 PRK13014 methionine sulfoxide 74.2 4.3 9.2E-05 40.9 4.4 49 140-188 15-82 (186)
223 TIGR01460 HAD-SF-IIA Haloacid 74.1 14 0.00031 39.1 8.7 85 796-886 7-101 (236)
224 PRK00058 methionine sulfoxide 73.2 5.1 0.00011 41.1 4.7 48 140-187 52-118 (213)
225 PLN02423 phosphomannomutase 73.0 5.3 0.00012 42.6 5.2 43 848-891 182-231 (245)
226 PRK13748 putative mercuric red 72.4 9.5 0.0002 46.3 7.8 66 132-198 4-69 (561)
227 TIGR01689 EcbF-BcbF capsule bi 71.7 7 0.00015 36.8 5.0 71 785-864 3-76 (126)
228 TIGR01459 HAD-SF-IIA-hyp4 HAD- 71.0 4.5 9.9E-05 43.1 4.1 83 805-888 140-237 (242)
229 COG0078 ArgF Ornithine carbamo 70.6 64 0.0014 35.0 12.3 91 777-876 65-164 (310)
230 PRK02261 methylaspartate mutas 70.5 35 0.00075 32.8 9.6 76 776-851 25-122 (137)
231 PRK09579 multidrug efflux prot 70.5 2.8E+02 0.006 36.4 20.8 143 45-189 44-210 (1017)
232 PRK13748 putative mercuric red 70.4 13 0.00028 45.1 8.4 65 49-114 3-67 (561)
233 CHL00200 trpA tryptophan synth 68.9 1.2E+02 0.0026 32.6 14.3 99 771-881 108-217 (263)
234 TIGR01501 MthylAspMutase methy 68.7 40 0.00087 32.2 9.4 85 777-863 24-130 (134)
235 COG2177 FtsX Cell division pro 68.2 1.9E+02 0.0041 31.7 20.5 76 140-233 71-149 (297)
236 KOG4383 Uncharacterized conser 67.5 29 0.00062 41.1 9.5 34 449-482 165-198 (1354)
237 PRK14010 potassium-transportin 67.1 2.3E+02 0.005 35.1 17.8 70 768-838 443-521 (673)
238 COG0225 MsrA Peptide methionin 65.8 9.8 0.00021 37.5 4.7 49 140-188 13-80 (174)
239 COG4669 EscJ Type III secretor 65.4 10 0.00022 39.2 4.9 104 153-264 42-175 (246)
240 TIGR00914 2A0601 heavy metal e 64.9 2E+02 0.0043 38.0 18.0 145 44-191 45-222 (1051)
241 PF01625 PMSR: Peptide methion 64.9 12 0.00026 36.7 5.1 49 140-188 7-74 (155)
242 PF02401 LYTB: LytB protein; 63.0 1.7E+02 0.0036 31.9 13.9 101 794-895 156-267 (281)
243 cd02072 Glm_B12_BD B12 binding 61.3 54 0.0012 31.0 8.6 74 777-850 22-117 (128)
244 TIGR00401 msrA methionine-S-su 60.9 14 0.0003 35.9 4.8 49 140-188 7-74 (149)
245 KOG2882 p-Nitrophenyl phosphat 59.8 31 0.00068 37.2 7.5 102 782-889 21-129 (306)
246 cd02071 MM_CoA_mut_B12_BD meth 59.3 41 0.00089 31.4 7.7 60 792-851 51-112 (122)
247 PLN02591 tryptophan synthase 59.2 1.1E+02 0.0024 32.7 11.6 110 771-892 95-219 (250)
248 COG2503 Predicted secreted aci 59.0 38 0.00082 35.4 7.6 78 804-881 123-209 (274)
249 PLN02645 phosphoglycolate phos 58.9 19 0.00041 40.0 6.1 60 857-918 239-308 (311)
250 PRK05550 bifunctional methioni 58.5 14 0.00031 39.8 4.9 48 140-187 134-200 (283)
251 PF01206 TusA: Sulfurtransfera 56.6 45 0.00098 27.5 6.7 56 131-196 2-57 (70)
252 PRK00058 methionine sulfoxide 56.2 53 0.0011 33.9 8.2 48 58-105 52-118 (213)
253 TIGR01456 CECR5 HAD-superfamil 55.6 20 0.00042 40.1 5.6 86 796-887 9-106 (321)
254 COG0841 AcrB Cation/multidrug 55.5 55 0.0012 42.3 10.2 119 143-262 63-208 (1009)
255 PRK14054 methionine sulfoxide 54.1 23 0.0005 35.3 5.1 50 58-107 10-78 (172)
256 PRK14194 bifunctional 5,10-met 53.4 62 0.0013 35.5 8.7 59 849-907 141-209 (301)
257 PF01206 TusA: Sulfurtransfera 52.9 40 0.00087 27.8 5.8 56 49-114 2-57 (70)
258 PRK13111 trpA tryptophan synth 51.5 3.4E+02 0.0073 29.2 14.6 97 771-879 106-213 (258)
259 COG1888 Uncharacterized protei 51.3 80 0.0017 27.4 7.0 69 46-114 6-79 (97)
260 PF06506 PrpR_N: Propionate ca 49.7 81 0.0017 31.6 8.5 107 806-929 64-172 (176)
261 PLN02423 phosphomannomutase 47.3 40 0.00086 36.0 6.1 47 785-835 9-55 (245)
262 cd04724 Tryptophan_synthase_al 47.1 1.8E+02 0.0039 30.9 11.0 95 772-878 94-199 (242)
263 TIGR02250 FCP1_euk FCP1-like p 46.5 28 0.00061 34.2 4.4 45 801-846 56-101 (156)
264 TIGR00262 trpA tryptophan synt 46.1 2.5E+02 0.0055 30.1 12.0 96 771-878 104-210 (256)
265 PRK10555 aminoglycoside/multid 45.8 1.2E+02 0.0025 40.0 11.1 119 143-262 62-209 (1037)
266 PF00875 DNA_photolyase: DNA p 44.6 90 0.002 30.8 7.9 73 807-879 54-132 (165)
267 COG4669 EscJ Type III secretor 44.3 36 0.00079 35.3 4.9 98 55-162 15-130 (246)
268 PLN03064 alpha,alpha-trehalose 43.0 57 0.0012 41.6 7.4 73 770-842 578-662 (934)
269 KOG3128 Uncharacterized conser 43.0 1.5E+02 0.0033 31.3 9.0 114 804-917 139-290 (298)
270 PRK05528 methionine sulfoxide 42.0 49 0.0011 32.4 5.2 49 58-106 8-70 (156)
271 PF00873 ACR_tran: AcrB/AcrD/A 41.6 55 0.0012 42.9 7.4 119 143-262 62-209 (1021)
272 KOG3109 Haloacid dehalogenase- 41.5 1.8E+02 0.004 30.1 9.2 89 796-887 92-200 (244)
273 KOG2914 Predicted haloacid-hal 40.4 77 0.0017 33.2 6.7 88 803-890 92-194 (222)
274 COG1832 Predicted CoA-binding 40.3 1.3E+02 0.0027 28.7 7.3 87 793-881 17-113 (140)
275 TIGR01106 ATPase-IIC_X-K sodiu 40.2 4.1E+02 0.0089 34.8 14.8 157 449-624 163-326 (997)
276 TIGR00640 acid_CoA_mut_C methy 40.1 1.1E+02 0.0023 29.2 7.1 67 791-857 53-122 (132)
277 PRK11018 hypothetical protein; 39.8 1.5E+02 0.0032 25.3 7.2 57 130-196 9-65 (78)
278 cd03421 SirA_like_N SirA_like_ 38.9 1.5E+02 0.0033 24.1 7.1 54 132-196 2-55 (67)
279 PRK15122 magnesium-transportin 38.8 1.1E+02 0.0024 39.5 9.2 188 409-625 126-352 (903)
280 TIGR01647 ATPase-IIIA_H plasma 38.1 1.6E+02 0.0035 37.2 10.4 191 410-626 71-270 (755)
281 cd02067 B12-binding B12 bindin 37.9 1.4E+02 0.003 27.5 7.5 56 792-847 51-108 (119)
282 PRK10614 multidrug efflux syst 37.7 6.7E+02 0.015 33.0 16.3 130 60-189 578-730 (1025)
283 PRK14018 trifunctional thiored 37.6 1.1E+02 0.0023 36.5 8.1 48 140-187 205-270 (521)
284 PRK14170 bifunctional 5,10-met 37.5 1.5E+02 0.0032 32.3 8.5 59 849-907 139-207 (284)
285 PRK15127 multidrug efflux syst 37.4 1.5E+02 0.0031 39.1 10.1 119 143-262 62-209 (1049)
286 cd04888 ACT_PheB-BS C-terminal 37.2 2.2E+02 0.0047 23.5 8.1 67 169-235 4-74 (76)
287 COG4996 Predicted phosphatase 37.2 1.4E+02 0.0031 28.1 6.9 72 803-874 41-125 (164)
288 PRK14179 bifunctional 5,10-met 37.1 1.6E+02 0.0034 32.1 8.6 60 848-907 139-208 (284)
289 PRK09577 multidrug efflux prot 37.0 1.9E+02 0.0041 38.0 11.1 119 143-262 62-208 (1032)
290 PF11491 DUF3213: Protein of u 36.8 57 0.0012 27.8 4.0 52 143-194 13-64 (88)
291 PRK03692 putative UDP-N-acetyl 36.7 2.2E+02 0.0048 30.2 9.6 123 810-934 96-235 (243)
292 PRK13014 methionine sulfoxide 36.7 46 0.00099 33.6 4.2 58 42-105 5-81 (186)
293 PRK13125 trpA tryptophan synth 36.1 3.7E+02 0.008 28.5 11.4 110 771-892 90-215 (244)
294 PRK01122 potassium-transportin 36.1 9.4E+02 0.02 29.9 18.2 16 977-992 632-647 (679)
295 TIGR00915 2A0602 The (Largely 35.4 1.8E+02 0.0039 38.3 10.5 119 143-262 62-209 (1044)
296 PF15584 Imm44: Immunity prote 35.1 18 0.0004 31.4 0.9 19 460-478 13-31 (94)
297 COG1888 Uncharacterized protei 34.8 1.9E+02 0.004 25.3 6.8 52 145-196 23-79 (97)
298 cd01994 Alpha_ANH_like_IV This 34.4 2.1E+02 0.0045 29.2 8.8 72 807-878 11-101 (194)
299 PF02680 DUF211: Uncharacteriz 34.3 71 0.0015 28.2 4.4 53 62-114 20-77 (95)
300 PRK10503 multidrug efflux syst 34.2 2.4E+02 0.0052 37.1 11.3 130 132-262 58-219 (1040)
301 PRK01045 ispH 4-hydroxy-3-meth 33.9 6.7E+02 0.015 27.5 18.1 101 794-894 157-267 (298)
302 KOG1635 Peptide methionine sul 33.5 75 0.0016 31.2 4.8 49 140-188 31-98 (191)
303 TIGR00739 yajC preprotein tran 33.2 2.1E+02 0.0046 24.8 7.2 23 419-442 24-47 (84)
304 PRK14172 bifunctional 5,10-met 32.9 2.7E+02 0.0059 30.2 9.6 60 848-907 139-208 (278)
305 PRK00087 4-hydroxy-3-methylbut 32.3 1.1E+03 0.023 29.3 17.6 100 795-894 156-263 (647)
306 PRK14184 bifunctional 5,10-met 32.0 2.4E+02 0.0053 30.7 9.1 59 849-907 139-211 (286)
307 COG0474 MgtA Cation transport 31.8 5.8E+02 0.013 33.0 14.1 208 398-626 107-332 (917)
308 PF01625 PMSR: Peptide methion 31.8 1.1E+02 0.0025 29.9 6.0 49 58-106 7-74 (155)
309 PRK14189 bifunctional 5,10-met 31.4 2.2E+02 0.0048 31.0 8.7 60 849-908 140-209 (285)
310 TIGR00401 msrA methionine-S-su 31.4 99 0.0022 30.1 5.4 48 58-105 7-73 (149)
311 PF12710 HAD: haloacid dehalog 31.3 25 0.00054 35.5 1.4 13 649-661 1-13 (192)
312 PRK15424 propionate catabolism 31.1 5.3E+02 0.011 31.1 12.6 78 806-885 94-173 (538)
313 TIGR00288 conserved hypothetic 31.1 5.3E+02 0.011 25.5 12.7 91 771-873 43-137 (160)
314 COG1188 Ribosome-associated he 30.8 1.4E+02 0.0029 26.9 5.6 21 452-472 43-63 (100)
315 cd00860 ThrRS_anticodon ThrRS 30.3 1.9E+02 0.0041 24.8 6.8 47 797-843 6-53 (91)
316 cd04888 ACT_PheB-BS C-terminal 30.2 2E+02 0.0043 23.7 6.7 71 87-161 4-74 (76)
317 TIGR01524 ATPase-IIIB_Mg magne 30.1 2.2E+02 0.0047 36.6 9.8 193 403-624 97-318 (867)
318 PRK14188 bifunctional 5,10-met 30.0 1.9E+02 0.0041 31.8 7.9 59 849-907 140-208 (296)
319 PRK14191 bifunctional 5,10-met 29.9 2.2E+02 0.0048 31.0 8.3 59 849-907 139-207 (285)
320 PRK14175 bifunctional 5,10-met 29.9 2.4E+02 0.0053 30.7 8.7 60 849-908 140-209 (286)
321 cd03423 SirA SirA (also known 29.3 3E+02 0.0065 22.6 7.4 56 132-197 2-57 (69)
322 cd03422 YedF YedF is a bacteri 29.1 2.8E+02 0.0061 22.8 7.2 55 132-196 2-56 (69)
323 cd03420 SirA_RHOD_Pry_redox Si 28.9 1.2E+02 0.0026 25.0 4.9 55 50-114 2-56 (69)
324 COG0225 MsrA Peptide methionin 28.8 1E+02 0.0023 30.5 5.0 50 58-107 13-81 (174)
325 TIGR01659 sex-lethal sex-letha 28.8 8.8E+02 0.019 27.3 13.7 56 47-106 107-168 (346)
326 COG2177 FtsX Cell division pro 28.1 2.6E+02 0.0056 30.7 8.6 80 58-160 71-150 (297)
327 PRK11152 ilvM acetolactate syn 28.0 1.9E+02 0.0041 24.6 5.9 71 85-161 5-75 (76)
328 PF00763 THF_DHG_CYH: Tetrahyd 27.9 1.5E+02 0.0032 27.5 5.8 65 801-865 9-86 (117)
329 PRK14186 bifunctional 5,10-met 27.8 2.2E+02 0.0049 31.2 8.0 59 849-907 140-208 (297)
330 PF11491 DUF3213: Protein of u 27.7 83 0.0018 26.9 3.5 52 213-264 9-60 (88)
331 cd03420 SirA_RHOD_Pry_redox Si 27.0 3.4E+02 0.0074 22.3 7.3 56 132-197 2-57 (69)
332 TIGR02370 pyl_corrinoid methyl 26.7 1.3E+02 0.0028 30.8 5.8 68 777-846 107-191 (197)
333 COG4004 Uncharacterized protei 26.6 1.1E+02 0.0023 26.7 4.1 47 177-246 12-58 (96)
334 PRK11018 hypothetical protein; 26.6 1.9E+02 0.0041 24.6 5.8 56 48-113 9-64 (78)
335 COG5012 Predicted cobalamin bi 26.5 66 0.0014 33.3 3.4 56 793-848 157-213 (227)
336 PF00122 E1-E2_ATPase: E1-E2 A 26.4 6.6E+02 0.014 26.0 11.4 21 460-480 41-61 (230)
337 cd05017 SIS_PGI_PMI_1 The memb 26.3 1.6E+02 0.0034 27.2 5.8 41 804-846 55-95 (119)
338 KOG1618 Predicted phosphatase 25.8 2.5E+02 0.0054 30.8 7.6 82 785-874 35-129 (389)
339 cd00291 SirA_YedF_YeeD SirA, Y 25.7 3.6E+02 0.0078 21.8 7.4 55 132-196 2-56 (69)
340 TIGR02765 crypto_DASH cryptoch 25.6 2.5E+02 0.0053 32.7 8.6 62 806-867 61-127 (429)
341 PRK05585 yajC preprotein trans 25.5 4.1E+02 0.0088 24.3 8.0 31 413-443 33-63 (106)
342 PTZ00314 inosine-5'-monophosph 25.2 6E+02 0.013 30.2 11.7 113 771-886 180-304 (495)
343 cd00532 MGS-like MGS-like doma 25.2 3.8E+02 0.0082 24.5 8.0 75 797-876 3-80 (112)
344 cd04728 ThiG Thiazole synthase 24.9 4E+02 0.0088 28.2 8.8 84 795-879 96-188 (248)
345 PRK09579 multidrug efflux prot 24.8 1.7E+03 0.036 29.3 16.7 138 59-196 575-736 (1017)
346 TIGR03679 arCOG00187 arCOG0018 24.4 3.2E+02 0.007 28.4 8.3 63 806-870 73-140 (218)
347 PF00072 Response_reg: Respons 23.8 2.1E+02 0.0046 25.3 6.2 53 806-860 56-110 (112)
348 PRK09479 glpX fructose 1,6-bis 23.7 2.8E+02 0.0061 30.4 7.6 88 788-901 125-221 (319)
349 PF06506 PrpR_N: Propionate ca 23.7 1.3E+02 0.0029 30.1 5.1 72 800-874 14-86 (176)
350 PRK10481 hypothetical protein; 23.7 8.6E+02 0.019 25.5 11.4 113 746-867 62-184 (224)
351 PRK14178 bifunctional 5,10-met 23.6 3.8E+02 0.0082 29.1 8.7 60 849-908 134-203 (279)
352 cd04726 KGPDC_HPS 3-Keto-L-gul 23.4 7.3E+02 0.016 25.0 10.8 86 806-892 90-187 (202)
353 PRK15108 biotin synthase; Prov 23.3 7.8E+02 0.017 27.7 11.7 72 806-877 111-199 (345)
354 PRK14185 bifunctional 5,10-met 23.2 4.7E+02 0.01 28.6 9.4 59 849-907 139-211 (293)
355 TIGR01116 ATPase-IIA1_Ca sarco 22.9 4.7E+02 0.01 33.9 11.0 215 403-626 45-273 (917)
356 COG4229 Predicted enolase-phos 22.9 1.7E+02 0.0038 29.2 5.3 86 800-886 100-198 (229)
357 cd04236 AAK_NAGS-Urea AAK_NAGS 22.7 3.5E+02 0.0077 29.3 8.3 100 759-866 8-112 (271)
358 PF03129 HGTP_anticodon: Antic 22.5 2.4E+02 0.0051 24.5 6.0 48 796-843 3-54 (94)
359 COG0415 PhrB Deoxyribodipyrimi 22.4 3.1E+02 0.0068 32.1 8.2 65 806-870 55-124 (461)
360 TIGR03556 photolyase_8HDF deox 22.3 3.2E+02 0.0068 32.3 8.6 63 806-868 55-122 (471)
361 cd04877 ACT_TyrR N-terminal AC 21.9 4E+02 0.0086 22.0 6.9 66 168-234 3-68 (74)
362 cd03421 SirA_like_N SirA_like_ 21.9 1.5E+02 0.0033 24.1 4.2 53 50-113 2-54 (67)
363 PHA02669 hypothetical protein; 21.8 2E+02 0.0044 27.8 5.3 32 400-431 17-49 (210)
364 TIGR03679 arCOG00187 arCOG0018 21.8 6E+02 0.013 26.4 9.7 71 807-877 9-98 (218)
365 PF13380 CoA_binding_2: CoA bi 21.7 1.3E+02 0.0027 27.9 4.1 40 804-843 64-104 (116)
366 TIGR01494 ATPase_P-type ATPase 21.7 1.4E+03 0.03 27.1 14.7 151 449-625 56-213 (499)
367 PRK11840 bifunctional sulfur c 21.6 7.6E+02 0.016 27.4 10.5 75 800-876 175-259 (326)
368 PRK14183 bifunctional 5,10-met 21.4 3.9E+02 0.0084 29.1 8.2 59 849-907 139-207 (281)
369 PF02680 DUF211: Uncharacteriz 21.3 1.7E+02 0.0037 25.9 4.4 53 144-196 20-77 (95)
370 PRK08508 biotin synthase; Prov 21.1 8.6E+02 0.019 26.3 11.2 103 770-877 44-165 (279)
371 cd01994 Alpha_ANH_like_IV This 21.0 4.6E+02 0.01 26.7 8.5 65 805-871 74-143 (194)
372 PRK05550 bifunctional methioni 20.7 1.4E+02 0.0031 32.3 4.7 49 57-105 133-200 (283)
373 PRK14176 bifunctional 5,10-met 20.5 3.6E+02 0.0077 29.5 7.7 59 848-906 145-213 (287)
374 TIGR00216 ispH_lytB (E)-4-hydr 20.2 1.1E+03 0.025 25.6 19.0 100 795-894 156-265 (280)
375 TIGR02329 propionate_PrpR prop 20.2 1.1E+03 0.023 28.4 12.4 79 806-886 84-164 (526)
376 TIGR01460 HAD-SF-IIA Haloacid 20.0 7.5E+02 0.016 25.9 10.2 31 857-887 197-229 (236)
377 cd06279 PBP1_LacI_like_3 Ligan 20.0 6E+02 0.013 27.1 9.9 38 810-847 47-85 (283)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-153 Score=1305.57 Aligned_cols=897 Identities=50% Similarity=0.786 Sum_probs=829.8
Q ss_pred CCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhhhcccCCCCCCCCcceeccc
Q 001906 53 TGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQY 132 (997)
Q Consensus 53 ~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~l 132 (997)
.||+|..|.+.+|++++..+|+.+..+++.++++.+.|+ ...+++.+++++++.||++....++.... .+..+
T Consensus 1 ~gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~-~~~~~~~i~~~ied~gf~~~~~~~~~~~~------~~~~l 73 (951)
T KOG0207|consen 1 KGMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYD-NIVSPESIKETIEDMGFEASLLSDSEITA------SKCYL 73 (951)
T ss_pred CCccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEe-eccCHHHHHHHhhcccceeeecccCcccc------ceeEE
Confidence 499999999999999999999999999999999999999 88999999999999999998876654322 15589
Q ss_pred ccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccCC---ccceeeeec
Q 001906 133 TIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSG---QDKILLQVT 209 (997)
Q Consensus 133 ~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~~~~~---~~~~~l~v~ 209 (997)
++.||+|.+|+..+|+.+++.+||.++.+.+..+++++.|||..++.+.+.+.+++.||++....+.. ..++.|.+.
T Consensus 74 ~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~~~~~i~L~v~ 153 (951)
T KOG0207|consen 74 SVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGNSNQKIYLDVL 153 (951)
T ss_pred EecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCCCCCcEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999998766542 257899999
Q ss_pred CccchhhhHHHHhhhhcCCCceEEEeecCCCeEEEEecCCCCCchhhhhhhcccCCCcceeeccCccc---cccccchHH
Q 001906 210 GVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMNPFA---RMTSRDSEE 286 (997)
Q Consensus 210 gm~c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~~d~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~---~~~~~~~~~ 286 (997)
||.|.+|+..||+.+.+++||.+++++..++++.|.|||..++++++.+.++..+ +.+.+..... ....++..+
T Consensus 154 g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~---~~~~~~~~~~~~~~~~l~~~~e 230 (951)
T KOG0207|consen 154 GMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETG---FEASVRPYGDTTFKNSLKHKEE 230 (951)
T ss_pred cccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhc---ccceeeeccccchhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999988 5444433211 112345677
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCchhhHHHHhhhccCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHcCCCChh
Q 001906 287 TSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRNGSTNMD 366 (997)
Q Consensus 287 ~~~~~~~l~~s~~~~v~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~l~~~~~~md 366 (997)
.+.|++.|+++..+++|++++.+.+++.......+.....++++..++.++|++|++|..||+||..||++|+++..|||
T Consensus 231 i~~w~~~fl~s~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~vqf~~G~~fy~~A~ksL~~g~~nMd 310 (951)
T KOG0207|consen 231 IRKWKRPFLISLGFSLPVSFAMIICPPLAWILALLVPFLPGLSYGNSLSFVLATPVQFVGGRPFYLAAYKSLKRGSANMD 310 (951)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhccchhhhhhhccccccchhhhHHHhhhheeeEEecceeeHHHHHHHHhcCCCCce
Confidence 89999999999999999999988887755422222223567788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCc
Q 001906 367 VLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGK 446 (997)
Q Consensus 367 ~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~ 446 (997)
+|+++++++||+||+++++....... +..||+++.|++.|+++|+|+|.+++.|+...+.+|.++.|.++.++.++ +
T Consensus 311 vLv~L~t~aay~~S~~~~~~~~~~~~-~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii~~g--~ 387 (951)
T KOG0207|consen 311 VLVVLGTTAAYFYSIFSLLAAVVFDS-PPTFFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKATIIEDG--S 387 (951)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHccC-cchhccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccceEeecC--C
Confidence 99999999999999999887666533 78999999999999999999999999999999999999999999988544 2
Q ss_pred eeeEEEEecCCCCCCCEEEecCCCcccccEEEEecceeeeccccCCCCcccccCCCCceecceEEeeeeEEEEEEEecCc
Q 001906 447 CIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSD 526 (997)
Q Consensus 447 ~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~ 526 (997)
++++||.+.+++||+|.|.||++||+||+|++|++.||||++|||++||.|++|++|.+||+|.+|.+.++++++|+|
T Consensus 388 --~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss~VDEs~iTGEs~PV~Kk~gs~ViaGsiN~nG~l~VkaT~~g~d 465 (951)
T KOG0207|consen 388 --EEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSSEVDESLITGESMPVPKKKGSTVIAGSINLNGTLLVKATKVGGD 465 (951)
T ss_pred --cceEeeeeeeccCCEEEECCCCccccccEEEeCceeechhhccCCceecccCCCCeeeeeeecCCceEEEEEEecccc
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCccCCCCccHHHHHHHHhhhhh
Q 001906 527 AVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGV-LGAYPEQWLPENGTHFVFALMFSISVVV 605 (997)
Q Consensus 527 t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~svlv 605 (997)
|.+++|.++++++|.+|+|+|+++|+++.||+|+++++++++|++|++.+. ...++..|. ..+..++..+++|++
T Consensus 466 ttla~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~~g~~~~~~~~~~~----~~~~~a~~~aisVlv 541 (951)
T KOG0207|consen 466 TTLAQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWILIGKIVFKYPRSFF----DAFSHAFQLAISVLV 541 (951)
T ss_pred chHHHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHHHccccccCcchhh----HHHHHHHHhhheEEE
Confidence 999999999999999999999999999999999999999999999999875 344455554 578999999999999
Q ss_pred hhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCC-CCHHHHHHHHHH
Q 001906 606 IACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-MDRGEFLTLVAS 684 (997)
Q Consensus 606 ~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~-~~~~~~l~~~~~ 684 (997)
++|||+|++|+|++++.+...++++|+++|+.+.+|.+.++++++||||||||+|++.|.++....+ .+..+++.++++
T Consensus 542 iACPCaLgLATPtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~a 621 (951)
T KOG0207|consen 542 IACPCALGLATPTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVFDKTGTLTEGKPTVVDFKSLSNPISLKEALALVAA 621 (951)
T ss_pred EECchhhhcCCceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEEcCCCceecceEEEEEEEecCCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998877 788999999999
Q ss_pred hhccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCCe--EEEEEcCeEEEEeeHhhhhh
Q 001906 685 AEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRG--IQCFISGKQVLVGNRKLLNE 762 (997)
Q Consensus 685 ~~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g--i~~~~~g~~~~ig~~~~~~~ 762 (997)
.|..++||+++|+++|++.... ......+.+|++.+|+| +.+.++|+++.+|+.+++.+
T Consensus 622 ~Es~SeHPig~AIv~yak~~~~-------------------~~~~~~~~~~~~~pg~g~~~~~~~~~~~i~iGN~~~~~r 682 (951)
T KOG0207|consen 622 MESGSEHPIGKAIVDYAKEKLV-------------------EPNPEGVLSFEYFPGEGIYVTVTVDGNEVLIGNKEWMSR 682 (951)
T ss_pred HhcCCcCchHHHHHHHHHhccc-------------------ccCccccceeecccCCCcccceEEeeeEEeechHHHHHh
Confidence 9999999999999999998731 01123456778888988 67889999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Q 001906 763 SGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI 842 (997)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi 842 (997)
++...+++.++..++.+..|++++++++|+++.|++.++|++|+|+..+++.||++|++++|+|||+..+|+++|+++|+
T Consensus 683 ~~~~~~~~i~~~~~~~e~~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi 762 (951)
T KOG0207|consen 683 NGCSIPDDILDALTESERKGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGI 762 (951)
T ss_pred cCCCCchhHHHhhhhHhhcCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHHHH
Q 001906 843 QDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRK 922 (997)
Q Consensus 843 ~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~ 922 (997)
+++|+++.|++|.++|+.+|+++..|+|||||+||+|||.+|||||++|.|++.|.++||+++++|++.+++.+++++|+
T Consensus 763 ~~V~aev~P~~K~~~Ik~lq~~~~~VaMVGDGINDaPALA~AdVGIaig~gs~vAieaADIVLmrn~L~~v~~ai~LSrk 842 (951)
T KOG0207|consen 763 DNVYAEVLPEQKAEKIKEIQKNGGPVAMVGDGINDAPALAQADVGIAIGAGSDVAIEAADIVLMRNDLRDVPFAIDLSRK 842 (951)
T ss_pred ceEEeccCchhhHHHHHHHHhcCCcEEEEeCCCCccHHHHhhccceeeccccHHHHhhCCEEEEccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHHHHHhhhhhHHHhhhhhccccCCCCCc
Q 001906 923 TFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRYKKPRL 988 (997)
Q Consensus 923 ~~~~i~~n~~~~~~~n~i~i~la~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~~~~~~ 988 (997)
+.++||+|+.|++.||+++||+|+|.|.|| |+.|+||+|.++|.+||+.|++|||.|++|++|..
T Consensus 843 t~~rIk~N~~~A~~yn~~~IpIAagvF~P~-~~~L~Pw~A~lama~SSvsVv~sSllLk~~k~p~~ 907 (951)
T KOG0207|consen 843 TVKRIKLNFVWALIYNLVGIPIAAGVFAPF-GIVLPPWMASLAMAASSVSVVLSSLLLKRYKKPTI 907 (951)
T ss_pred HHhhHHHHHHHHHHHHHhhhhhheecccCC-ccccCchHHHHHHHhhhHHHhhhHHHHhhcccccc
Confidence 999999999999999999999999999998 59999999999999999999999999999999974
No 2
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-133 Score=1171.35 Aligned_cols=706 Identities=46% Similarity=0.717 Sum_probs=646.6
Q ss_pred ceeeeecCccchhhhHHHHhhhhcCCCceEEEeecCCCeEEEEecCCCCC-chhhhhhhcccCCCcceeeccCccc-ccc
Q 001906 203 KILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALS-SRSLVDGIAGRSNGKFQIRVMNPFA-RMT 280 (997)
Q Consensus 203 ~~~l~v~gm~c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~~d~~~~~-~~~i~~~i~~~g~~~~~~~~~~~~~-~~~ 280 (997)
+..+.++||+|++|+.++| ++++++||.++++|+.++++.|.||+...+ .+++.+.+++.| |.+....... ...
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~g---y~~~~~~~~~~~~~ 78 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAG---YSARLTAALADPAE 78 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcC---ccccccccccchhh
Confidence 5678999999999999999 999999999999999999999999998777 789999999998 5433210000 000
Q ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhhHHHHhhhccCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHc
Q 001906 281 SRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRN 360 (997)
Q Consensus 281 ~~~~~~~~~~~~~l~~s~~~~v~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~l~~ 360 (997)
.+.... ....++++++.+++++.++..+..+. +..+..|+.+++++|++|+.|+|||+.+|+.+++
T Consensus 79 ~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l~~ 144 (713)
T COG2217 79 AEARLL-RELLRRLIIAGLLTLPLLLLSLGLLL-------------GAFLLPWVSFLLATPVLFYGGWPFYRGAWRALRR 144 (713)
T ss_pred hhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhc-------------chhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 011011 34456777788887777665333211 0135568899999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEE
Q 001906 361 GSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLV 440 (997)
Q Consensus 361 ~~~~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~ 440 (997)
+++|||+|++++++.||+||++.++.. .||+.++++++++++|+++|.+++.|+++++++|.++.|++++++
T Consensus 145 ~~~~md~Lv~la~~~A~~~s~~~~~~~--------~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~ 216 (713)
T COG2217 145 GRLNMDTLVALATIGAYAYSLYATLFP--------VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVV 216 (713)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 999999999999999999999988762 899999999999999999999999999999999999999999888
Q ss_pred EcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEEecceeeeccccCCCCcccccCCCCceecceEEeeeeEEEEE
Q 001906 441 VKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQA 520 (997)
Q Consensus 441 ~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v 520 (997)
+++ | ++++||+++|++||+|+|+|||+||+||+|++|++.||||+|||||.|+.|.+||.|++||+|.+|.++++|
T Consensus 217 ~~~-~---~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s~vDeS~iTGEs~PV~k~~Gd~V~aGtiN~~G~l~i~v 292 (713)
T COG2217 217 RGD-G---EEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSSVDESMLTGESLPVEKKPGDEVFAGTVNLDGSLTIRV 292 (713)
T ss_pred ecC-C---cEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcEEeecchhhCCCCCEecCCCCEEeeeEEECCccEEEEE
Confidence 663 5 278999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHH
Q 001906 521 TKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFS 600 (997)
Q Consensus 521 ~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (997)
+++|.+|++++|.+++++++.+|+|+|+++|+++.+|+|.++++++++|++|++.+. .+|..++.++
T Consensus 293 t~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~-------------~~~~~a~~~a 359 (713)
T COG2217 293 TRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGG-------------GDWETALYRA 359 (713)
T ss_pred EecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcC-------------CcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877631 3578899999
Q ss_pred hhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCCHHHHHH
Q 001906 601 ISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLT 680 (997)
Q Consensus 601 ~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~ 680 (997)
+++|+++|||||++++|+++..++++++|+||++|+++++|.++++|+++||||||||+|+|+|+++...++ ++++++.
T Consensus 360 ~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~-~e~~~L~ 438 (713)
T COG2217 360 LAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDG-DEDELLA 438 (713)
T ss_pred HhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCC-CHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888 8899999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCCeEEEEEcCeEEEEeeHhhh
Q 001906 681 LVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLL 760 (997)
Q Consensus 681 ~~~~~~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~ 760 (997)
+++++|..|+||+++||+++++..+ ...+.+|++++|+|+++.++|+.+.+|+++++
T Consensus 439 laAalE~~S~HPiA~AIv~~a~~~~-----------------------~~~~~~~~~i~G~Gv~~~v~g~~v~vG~~~~~ 495 (713)
T COG2217 439 LAAALEQHSEHPLAKAIVKAAAERG-----------------------LPDVEDFEEIPGRGVEAEVDGERVLVGNARLL 495 (713)
T ss_pred HHHHHHhcCCChHHHHHHHHHHhcC-----------------------CCCccceeeeccCcEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999988763 23455589999999999999999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Q 001906 761 NESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREI 840 (997)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~ 840 (997)
.+++.+.+. ..+..+.++++|.++++++.|++++|++.++|++|++++++|++||++|++++|+|||+..+|+++|+++
T Consensus 496 ~~~~~~~~~-~~~~~~~~~~~G~t~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~l 574 (713)
T COG2217 496 GEEGIDLPL-LSERIEALESEGKTVVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKEL 574 (713)
T ss_pred hhcCCCccc-hhhhHHHHHhcCCeEEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 999887766 5666778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHH
Q 001906 841 GIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLS 920 (997)
Q Consensus 841 gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~ 920 (997)
||+++++++.|++|.++|+.||++|++|+|||||+||+|||++||||||||.|+|.++++||++++++|++.++++++++
T Consensus 575 GId~v~AellPedK~~~V~~l~~~g~~VamVGDGINDAPALA~AdVGiAmG~GtDvA~eaADvvL~~~dL~~v~~ai~ls 654 (713)
T COG2217 575 GIDEVRAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVVLMRDDLSAVPEAIDLS 654 (713)
T ss_pred ChHhheccCCcHHHHHHHHHHHhcCCEEEEEeCCchhHHHHhhcCeeEeecCCcHHHHHhCCEEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHHHHHhhhhhHHHhhhhhccccC
Q 001906 921 RKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRY 983 (997)
Q Consensus 921 r~~~~~i~~n~~~~~~~n~i~i~la~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~ 983 (997)
|+++++||||++|+|.||+++||+|+|++ ++||+|+++|.+||++|++|||||+++
T Consensus 655 r~t~~~IkqNl~~A~~yn~~~iplA~~g~-------l~p~~A~~am~~SSv~VvlNaLRL~~~ 710 (713)
T COG2217 655 RATRRIIKQNLFWAFGYNAIAIPLAAGGL-------LTPWIAALAMSGSSVLVVLNALRLLRS 710 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 99999999999999999999999999653 799999999999999999999999874
No 3
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=1.6e-120 Score=1128.26 Aligned_cols=811 Identities=37% Similarity=0.595 Sum_probs=697.6
Q ss_pred eEEEEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhhhcccCC---CCC
Q 001906 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESST---SGP 122 (997)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~---~~~ 122 (997)
+++++.|+||+|++|+.+|++++++++||..+.+++.+ ..+..+ .+.+.+.++++++||+++....+.. ...
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~~--~~v~~~---~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~ 77 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITE--AHVTGT---ASAEALIETIKQAGYDASVSHPKAKPLTESS 77 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeeeE--EEEEec---CCHHHHHHHHHhcCCcccccccccccccccc
Confidence 46789999999999999999999999999999999954 444432 4678999999999999986432110 000
Q ss_pred ----------------CCCcceecccccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHH
Q 001906 123 ----------------KPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAI 186 (997)
Q Consensus 123 ----------------~~~~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i 186 (997)
+.....+..+.++||+|++|+.++++.+.+.+||.++.+++.+++..+.+ ..+.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I 154 (834)
T PRK10671 78 IPSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAV 154 (834)
T ss_pred cCchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHH
Confidence 00011245688999999999999999999999999999999999988873 24677888888
Q ss_pred HhcCCceeeeccCCccceeeeecCccchhhhHHHHhhhhcCCCceEEEeecCCCeEEEEecCCCCCchhhhhhhcccCCC
Q 001906 187 EDAGFEASFVQSSGQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNG 266 (997)
Q Consensus 187 ~~~Gy~~~~~~~~~~~~~~l~v~gm~c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~~d~~~~~~~~i~~~i~~~g~~ 266 (997)
++.||.+.+..+.. . .+
T Consensus 155 ~~~Gy~a~~~~~~~------------------------------------------------~---~~------------ 171 (834)
T PRK10671 155 EKAGYGAEAIEDDA------------------------------------------------K---RR------------ 171 (834)
T ss_pred HhcCCCcccccccc------------------------------------------------c---hh------------
Confidence 99999764211000 0 00
Q ss_pred cceeeccCccccccccchHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhhHHHHhhhccCCcchHHHHH-HHHHHHHHhh
Q 001906 267 KFQIRVMNPFARMTSRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLN-WALVSVVQFV 345 (997)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~v~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 345 (997)
....+..+.+.+.+.+++..+++++++++++.+...++. + .+.....|+. +++++|+++|
T Consensus 172 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~ 232 (834)
T PRK10671 172 ----------ERQQETAQATMKRFRWQAIVALAVGIPVMVWGMIGDNMM-----V----TADNRSLWLVIGLITLAVMVF 232 (834)
T ss_pred ----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----c----CccchhHHHHHHHHHHHHHHH
Confidence 000000111223455566777777777766543110000 0 0000112543 5678899999
Q ss_pred cCHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHhhh-hcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 001906 346 IGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGV-VTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSD 424 (997)
Q Consensus 346 ~g~~~~~~~~~~l~~~~~~md~Li~l~~~~a~~~s~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~k~~~ 424 (997)
.|+|||+.||++++++++|||+|+++++++||+||++.++... ......+.||++++++++|+++|+|+|.+.+.|+++
T Consensus 233 ~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~~~~ 312 (834)
T PRK10671 233 AGGHFYRSAWKSLLNGSATMDTLVALGTGAAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHMLEARARQRSSK 312 (834)
T ss_pred hhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765421 111112459999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEEecceeeeccccCCCCcccccCCCCc
Q 001906 425 AIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSP 504 (997)
Q Consensus 425 ~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~~Vdes~LTGEs~pv~k~~g~~ 504 (997)
.+++|.++.|.+++++++ | ++++|++++|+|||+|+|++||+||+||+|++|++.||||+|||||.|+.|++||.
T Consensus 313 ~~~~L~~l~p~~a~~~~~--~---~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~~vdeS~lTGEs~pv~k~~gd~ 387 (834)
T PRK10671 313 ALEKLLDLTPPTARVVTD--E---GEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGDS 387 (834)
T ss_pred HHHHHhccCCCEEEEEeC--C---cEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceEEEeehhhcCCCCCEecCCCCE
Confidence 999999999999998854 3 46889999999999999999999999999999999999999999999999999999
Q ss_pred eecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 001906 505 VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQ 584 (997)
Q Consensus 505 v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~ 584 (997)
||+||+|.+|.+.++|+++|.+|+++++.+++++++.+|+++|+++|+++.+|+|++++++++++++|++.+.
T Consensus 388 V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~~~~~~------- 460 (834)
T PRK10671 388 VHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFGP------- 460 (834)
T ss_pred EEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876421
Q ss_pred ccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEE
Q 001906 585 WLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATV 664 (997)
Q Consensus 585 ~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v 664 (997)
...|..++.+++++++++|||||++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+|
T Consensus 461 -----~~~~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~fDKTGTLT~g~~~v 535 (834)
T PRK10671 461 -----APQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKTGTLTEGKPQV 535 (834)
T ss_pred -----chHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEEEcCCCccccCceEE
Confidence 113567888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCCeEE
Q 001906 665 TTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQ 744 (997)
Q Consensus 665 ~~~~~~~~~~~~~~l~~~~~~~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~ 744 (997)
.++...++.+.++++.+++++|..+.||+++|++++++... ...+.+|++++|+|+.
T Consensus 536 ~~~~~~~~~~~~~~l~~a~~~e~~s~hp~a~Ai~~~~~~~~-----------------------~~~~~~~~~~~g~Gv~ 592 (834)
T PRK10671 536 VAVKTFNGVDEAQALRLAAALEQGSSHPLARAILDKAGDMT-----------------------LPQVNGFRTLRGLGVS 592 (834)
T ss_pred EEEEccCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCC-----------------------CCCcccceEecceEEE
Confidence 99988888888999999999999999999999999875321 1235678889999999
Q ss_pred EEEcCeEEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEE
Q 001906 745 CFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVM 824 (997)
Q Consensus 745 ~~~~g~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i 824 (997)
+.++|+.+.+|+++++.+.+... +.+.+..++++++|.+++++++|++++|.+.+.|++||+++++|++|++.|++++|
T Consensus 593 ~~~~g~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~ 671 (834)
T PRK10671 593 GEAEGHALLLGNQALLNEQQVDT-KALEAEITAQASQGATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVM 671 (834)
T ss_pred EEECCEEEEEeCHHHHHHcCCCh-HHHHHHHHHHHhCCCeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEE
Confidence 99999999999999998776643 33455566778899999999999999999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEE
Q 001906 825 VTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYV 904 (997)
Q Consensus 825 ~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~v 904 (997)
+|||+..++..+++++|++++++++.|++|.++++.++.+++.|+|+|||.||++|+++||+||+||++++.++++||++
T Consensus 672 ~Tgd~~~~a~~ia~~lgi~~~~~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvgia~g~g~~~a~~~ad~v 751 (834)
T PRK10671 672 LTGDNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAIT 751 (834)
T ss_pred EcCCCHHHHHHHHHHcCCCEEEeCCCHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCeeEEecCCCHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHHHHHhhhhhHHHhhhhhccccCC
Q 001906 905 LMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRYK 984 (997)
Q Consensus 905 l~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~~ 984 (997)
++++++++|+.++++||+++++|+||+.|+++||++++|+|+|+|+|++|+.|+||+|+++|.+||++|++||+||++|+
T Consensus 752 l~~~~~~~i~~~i~l~r~~~~~i~~Nl~~a~~yn~~~i~~a~g~~~p~~g~~l~p~~a~~~m~~ss~~vv~nslrl~~~~ 831 (834)
T PRK10671 752 LMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSLGIPIAAGILWPFTGTLLNPVVAGAAMALSSITVVSNANRLLRFK 831 (834)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhcccCHHHHHHHhcccceeehhhhHHhcCCC
Confidence 99999999999999999999999999999999999999999999999889889999999999999999999999998888
Q ss_pred CCC
Q 001906 985 KPR 987 (997)
Q Consensus 985 ~~~ 987 (997)
+|+
T Consensus 832 ~~~ 834 (834)
T PRK10671 832 PKE 834 (834)
T ss_pred CCC
Confidence 764
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=4.1e-107 Score=986.93 Aligned_cols=687 Identities=29% Similarity=0.438 Sum_probs=595.2
Q ss_pred ccceeeeecCccchhhhHHHHhhhhcCCCceEEEeecCCCeEEEEecCCCCCchhhhhhhcccCCCcceeeccCcccccc
Q 001906 201 QDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMNPFARMT 280 (997)
Q Consensus 201 ~~~~~l~v~gm~c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~~d~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~~ 280 (997)
..+.++.+.||+|+.|+..+|+.+.+.+||.++++++.+++..+.|++.. . +++.+.+++.| |++...+..
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~G---y~a~~~~~~---- 122 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAG---FSLRDEQAA---- 122 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhcc---cccccccch----
Confidence 34567889999999999999999999999999999999999999998763 2 66666777666 443221110
Q ss_pred ccchHHHHHHH-HHHHHHHHhhhhHHHHHhhcCchhhHHHHhhhccCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 001906 281 SRDSEETSNMF-RLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALR 359 (997)
Q Consensus 281 ~~~~~~~~~~~-~~l~~s~~~~v~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~l~ 359 (997)
..+.+...++ .++. +++ ..+|++++.+.. . .+...|+.++++ .++.|+|||++||+.++
T Consensus 123 -~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~-----------~--~~~~~~~~~~~~---~~~~~~~~~~~a~~~l~ 182 (741)
T PRK11033 123 -AAAPESRLKSENLPL--ITL-AVMMAISWGLEQ-----------F--NHPFGQLAFIAT---TLVGLYPIARKALRLIR 182 (741)
T ss_pred -hhhHHHHHHHHHHHH--HHH-HHHHHHHHHHhh-----------h--hhHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 0111111121 1111 111 222222221100 0 011124444443 36788999999999999
Q ss_pred cCCC-ChhHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEE
Q 001906 360 NGST-NMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATAL 438 (997)
Q Consensus 360 ~~~~-~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~ 438 (997)
++++ |||+|++++++.+++++ . |+.++++++++++|+++|.++++|+++.+++|.++.|.+++
T Consensus 183 ~~~~~~~~~L~~~a~~~a~~~~---------------~-~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~ 246 (741)
T PRK11033 183 SGSPFAIETLMSVAAIGALFIG---------------A-TAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETAT 246 (741)
T ss_pred cCCCCCccHHHHHHHHHHHHHc---------------c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 9885 99999999998887653 2 34578899999999999999999999999999999999999
Q ss_pred EEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEEecceeeeccccCCCCcccccCCCCceecceEEeeeeEEE
Q 001906 439 LVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHI 518 (997)
Q Consensus 439 v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~ 518 (997)
++++ | ++++|++++|+|||+|+|++||+||+||+|++|++.||||+|||||.|+.|++||.||+||++.+|.+++
T Consensus 247 vir~--g---~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~~vdes~lTGEs~Pv~k~~Gd~V~aGt~~~~G~~~i 321 (741)
T PRK11033 247 RLRD--G---EREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGEKVPAGATSVDRLVTL 321 (741)
T ss_pred EEEC--C---EEEEEEHHHCCCCCEEEECCCCEEecceEEEECcEEeecccccCCCCCEecCCCCeeccCCEEcCceEEE
Confidence 8853 4 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHH
Q 001906 519 QATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALM 598 (997)
Q Consensus 519 ~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (997)
+|+++|.+|.+++|.+++++++.+++|+|+++|+++++|+|+++++++++|++|++.. ..+|..++.
T Consensus 322 ~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~~-------------~~~~~~~i~ 388 (741)
T PRK11033 322 EVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLF-------------AAPWQEWIY 388 (741)
T ss_pred EEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------cCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999885532 124677889
Q ss_pred HHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCCHHHH
Q 001906 599 FSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEF 678 (997)
Q Consensus 599 ~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~ 678 (997)
+++++++++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+|.++.++++.+++++
T Consensus 389 ~a~svlviacPcaL~latP~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~~ 468 (741)
T PRK11033 389 RGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATGISESEL 468 (741)
T ss_pred HHHHHHHHhchhhhhhhhHHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEecCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888999
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCCeEEEEEcCeEEEEeeHh
Q 001906 679 LTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRK 758 (997)
Q Consensus 679 l~~~~~~~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g~~~~ig~~~ 758 (997)
+.+++++|..+.||+++|++++++..+. .+....+++..+|+|+++.++|+.+.+|+++
T Consensus 469 l~~aa~~e~~s~hPia~Ai~~~a~~~~~---------------------~~~~~~~~~~~~g~Gv~~~~~g~~~~ig~~~ 527 (741)
T PRK11033 469 LALAAAVEQGSTHPLAQAIVREAQVRGL---------------------AIPEAESQRALAGSGIEGQVNGERVLICAPG 527 (741)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhcCC---------------------CCCCCcceEEEeeEEEEEEECCEEEEEecch
Confidence 9999999999999999999999986531 1223456778889999999999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Q 001906 759 LLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 838 (997)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~ 838 (997)
++.+ .++.+.+..++++++|++++++++|++++|++.|+|++|++++++|++|+++|++++|+|||+..++.++|+
T Consensus 528 ~~~~----~~~~~~~~~~~~~~~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~ 603 (741)
T PRK11033 528 KLPP----LADAFAGQINELESAGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAG 603 (741)
T ss_pred hhhh----ccHHHHHHHHHHHhCCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 8865 234455556778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHH
Q 001906 839 EIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 839 ~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
++||+ +++++.|++|.++++.+++. +.|+|||||+||+|||++|||||+||++++.++++||++++.+++..|+++++
T Consensus 604 ~lgi~-~~~~~~p~~K~~~v~~l~~~-~~v~mvGDgiNDapAl~~A~vgia~g~~~~~a~~~adivl~~~~l~~l~~~i~ 681 (741)
T PRK11033 604 ELGID-FRAGLLPEDKVKAVTELNQH-APLAMVGDGINDAPAMKAASIGIAMGSGTDVALETADAALTHNRLRGLAQMIE 681 (741)
T ss_pred HcCCC-eecCCCHHHHHHHHHHHhcC-CCEEEEECCHHhHHHHHhCCeeEEecCCCHHHHHhCCEEEecCCHHHHHHHHH
Confidence 99995 78889999999999999965 57999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHHHHHhhhhhHHHhhhhhccccCC
Q 001906 919 LSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRYK 984 (997)
Q Consensus 919 ~~r~~~~~i~~n~~~~~~~n~i~i~la~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~~ 984 (997)
+||+++++|+||+.|++.||++++|+|+.++ ++||+|+++|.+||++|++||+|+.+|+
T Consensus 682 ~sr~~~~~I~~nl~~a~~~n~~~i~~a~~g~-------~~~~~a~~~~~~ss~~v~~Nslrl~~~~ 740 (741)
T PRK11033 682 LSRATHANIRQNITIALGLKAIFLVTTLLGI-------TGLWLAVLADSGATALVTANALRLLRKR 740 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHcChHHHHHHHHHhhcccC
Confidence 9999999999999999999999999997322 5899999999999999999999998765
No 5
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=4.8e-98 Score=884.80 Aligned_cols=561 Identities=56% Similarity=0.880 Sum_probs=523.1
Q ss_pred cCHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHhhhhc-CCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 001906 346 IGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVT-GFWSPTYFETSAMLITFVLFGKYLEILAKGKTSD 424 (997)
Q Consensus 346 ~g~~~~~~~~~~l~~~~~~md~Li~l~~~~a~~~s~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~le~~~~~k~~~ 424 (997)
+|+|||++||++++++++|||+|++++++.+|+||++.++.+... +.....||++++++++++++|+++|.++++|+++
T Consensus 1 ~g~~~~~~a~~~l~~~~~~md~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~ 80 (562)
T TIGR01511 1 AGRPFYKSAWKALRHKAPNMDTLIALGTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASD 80 (562)
T ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999988764221 1122579999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEEecceeeeccccCCCCcccccCCCCc
Q 001906 425 AIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSP 504 (997)
Q Consensus 425 ~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~~Vdes~LTGEs~pv~k~~g~~ 504 (997)
.+++|.++.|.++++++++ | ++++|++++|+|||+|+|++||+|||||+|++|++.||||+|||||.|+.|++||.
T Consensus 81 ~~~~L~~~~p~~a~~~~~~-~---~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~gd~ 156 (562)
T TIGR01511 81 ALSKLAKLQPSTATLLTKD-G---SIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGESEVDESLVTGESLPVPKKVGDP 156 (562)
T ss_pred HHHHHHhcCCCEEEEEECC-C---eEEEEEHHHCCCCCEEEECCCCEecCceEEEECceEEehHhhcCCCCcEEcCCCCE
Confidence 9999999999999988654 4 56899999999999999999999999999999999999999999999999999999
Q ss_pred eecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 001906 505 VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQ 584 (997)
Q Consensus 505 v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~ 584 (997)
||+||+|.+|.++++|+++|.+|+++++.+++++++.+|+|+|+++|+++++|+|++++++++++++|.
T Consensus 157 V~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~----------- 225 (562)
T TIGR01511 157 VIAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWL----------- 225 (562)
T ss_pred EEeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 999999999999999999999999999999999999999999999999999999999999998888764
Q ss_pred ccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEE
Q 001906 585 WLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATV 664 (997)
Q Consensus 585 ~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v 664 (997)
.++.+++++++++|||+|++++|+++..++.+++|+||++|+++++|.|+++|++|||||||||+|+|++
T Consensus 226 ----------~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~v 295 (562)
T TIGR01511 226 ----------FALEFAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPTV 295 (562)
T ss_pred ----------HHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEEE
Confidence 2567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCCeEE
Q 001906 665 TTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQ 744 (997)
Q Consensus 665 ~~~~~~~~~~~~~~l~~~~~~~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~ 744 (997)
.++.+.++.++++++.+++++|+.+.||+++|++++++..+. ....+.++++++|+|+.
T Consensus 296 ~~i~~~~~~~~~~~l~~aa~~e~~s~HPia~Ai~~~~~~~~~---------------------~~~~~~~~~~~~g~Gi~ 354 (562)
T TIGR01511 296 TDVHVFGDRDRTELLALAAALEAGSEHPLAKAIVSYAKEKGI---------------------TLVEVSDFKAIPGIGVE 354 (562)
T ss_pred EEEecCCCCCHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC---------------------CcCCCCCeEEECCceEE
Confidence 999988888889999999999999999999999999976531 11234567888999999
Q ss_pred EEEcCeEEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEE
Q 001906 745 CFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVM 824 (997)
Q Consensus 745 ~~~~g~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i 824 (997)
+.++|+++.+|+++++.+.+..+++ ..++|.++++++.|++++|.+.++|++||+++++|++|+++|++++|
T Consensus 355 ~~~~g~~~~iG~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~i 426 (562)
T TIGR01511 355 GTVEGTKIQLGNEKLLGENAIKIDG--------KAEQGSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVM 426 (562)
T ss_pred EEECCEEEEEECHHHHHhCCCCCCh--------hhhCCCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEE
Confidence 9999999999999999877665432 34678999999999999999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEE
Q 001906 825 VTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYV 904 (997)
Q Consensus 825 ~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~v 904 (997)
+|||+...+..+++++|++ +++++.|++|.++++.++.+++.|+|+|||.||++|+++||+||+||++++.+++.||++
T Consensus 427 lSgd~~~~a~~ia~~lgi~-~~~~~~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vgia~g~g~~~a~~~Advv 505 (562)
T TIGR01511 427 LTGDNRKTAKAVAKELGIN-VRAEVLPDDKAALIKELQEKGRVVAMVGDGINDAPALAQADVGIAIGAGTDVAIEAADVV 505 (562)
T ss_pred EcCCCHHHHHHHHHHcCCc-EEccCChHHHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEEEEeCCcCHHHHhhCCEE
Confidence 9999999999999999996 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHH
Q 001906 905 LMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAA 962 (997)
Q Consensus 905 l~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la~g~~~~~~g~~l~p~~a 962 (997)
++++++..+++++++||+++++|+||+.|++.||++++|+|+|++.|+ |+.|+|++|
T Consensus 506 l~~~~l~~l~~~i~lsr~~~~~i~qn~~~a~~~n~~~i~la~~~~~~~-g~~~~p~~a 562 (562)
T TIGR01511 506 LMRNDLNDVATAIDLSRKTLRRIKQNLLWAFGYNVIAIPIAAGVLYPI-GILLSPAVA 562 (562)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccCCCcC
Confidence 999999999999999999999999999999999999999999988987 788999875
No 6
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=4.8e-90 Score=820.01 Aligned_cols=550 Identities=47% Similarity=0.726 Sum_probs=506.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCC
Q 001906 365 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 444 (997)
Q Consensus 365 md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~ 444 (997)
||+|++++++.+|+++.+ ..+++++++++++++++.++++|+++.+++|.+..|..+++++++
T Consensus 1 ~d~l~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~- 63 (556)
T TIGR01525 1 MDLLMALATIAAYAMGLV----------------LEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGD- 63 (556)
T ss_pred CcHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECC-
Confidence 799999999999888632 357889999999999999999999999999999999999988653
Q ss_pred CceeeEEEEecCCCCCCCEEEecCCCcccccEEEEecceeeeccccCCCCcccccCCCCceecceEEeeeeEEEEEEEec
Q 001906 445 GKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVG 524 (997)
Q Consensus 445 g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g 524 (997)
| ++++|++++|+|||+|.+++||+|||||+|++|++.||||+|||||.|+.|++|+.||+||.+.+|.++++|+++|
T Consensus 64 g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~g~~~~~v~~~g 140 (556)
T TIGR01525 64 G---SEEEVPVEELQVGDIVIVRPGERIPVDGVVISGESEVDESALTGESMPVEKKEGDEVFAGTINGDGSLTIRVTKLG 140 (556)
T ss_pred C---eEEEEEHHHCCCCCEEEECCCCEeccceEEEecceEEeehhccCCCCCEecCCcCEEeeceEECCceEEEEEEEec
Confidence 4 5689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhh
Q 001906 525 SDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVV 604 (997)
Q Consensus 525 ~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svl 604 (997)
.+|+++++.+++++++.+++|+|+..++++.+++++++++++++|++|++... . .++.++++++
T Consensus 141 ~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~---------------~-~~~~~~~~vl 204 (556)
T TIGR01525 141 EDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGA---------------L-GALYRALAVL 204 (556)
T ss_pred ccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------c-hHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998875421 1 6788999999
Q ss_pred hhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCC--HHHHHHHH
Q 001906 605 VIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD--RGEFLTLV 682 (997)
Q Consensus 605 v~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~--~~~~l~~~ 682 (997)
+++|||+|++++|+++..++.+++++||++|+++++|.++++|++|||||||||+|+|+|.++...++.+ .++++.++
T Consensus 205 v~~~P~al~l~~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l~~a 284 (556)
T TIGR01525 205 VVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDASISEEELLALA 284 (556)
T ss_pred hhccccchhehhHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCCCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998877655 78899999
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCccccccc-ccccccCCeEEEEEcC-eEEEEeeHhhh
Q 001906 683 ASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVS-DFSALPGRGIQCFISG-KQVLVGNRKLL 760 (997)
Q Consensus 683 ~~~~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~gi~~~~~g-~~~~ig~~~~~ 760 (997)
++++..+.||+++|+++++++.+... .. . ++.+++++|+++.++| .++.+|+++++
T Consensus 285 ~~~e~~~~hp~~~Ai~~~~~~~~~~~---------------------~~-~~~~~~~~~~gi~~~~~g~~~~~lg~~~~~ 342 (556)
T TIGR01525 285 AALEQSSSHPLARAIVRYAKKRGLEL---------------------PK-QEDVEEVPGKGVEATVDGQEEVRIGNPRLL 342 (556)
T ss_pred HHHhccCCChHHHHHHHHHHhcCCCc---------------------cc-ccCeeEecCCeEEEEECCeeEEEEecHHHH
Confidence 99999999999999999998763210 00 1 4556789999999999 79999999988
Q ss_pred hhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHH
Q 001906 761 NESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMG-VRPVMVTGDNWRTAHAVARE 839 (997)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~g-i~~~i~Tgd~~~~a~~ia~~ 839 (997)
.......+ ..+....++.++|++++++++|++++|.+.++|+++|+++++|++|+++| ++++|+|||+..++..++++
T Consensus 343 ~~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~ 421 (556)
T TIGR01525 343 ELAAEPIS-ASPDLLNEGESQGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAE 421 (556)
T ss_pred hhcCCCch-hhHHHHHHHhhCCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHH
Confidence 44333322 23344566778999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cCCceEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHH
Q 001906 840 IGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDL 919 (997)
Q Consensus 840 ~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~ 919 (997)
+|++++|+++.|++|.++++.++..++.|+|+|||.||++|+++||+|+++|++++.+++.||+++.+++++.+++++++
T Consensus 422 lgi~~~f~~~~p~~K~~~v~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~Ad~vi~~~~~~~l~~~i~~ 501 (556)
T TIGR01525 422 LGIDEVHAELLPEDKLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAGSDVAIEAADIVLLNDDLSSLPTAIDL 501 (556)
T ss_pred hCCCeeeccCCHHHHHHHHHHHHHcCCEEEEEECChhHHHHHhhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHH-HHHHHhhhhhHHHhhhhhcc
Q 001906 920 SRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPW-AAGACMALSSVSVVCSSLLL 980 (997)
Q Consensus 920 ~r~~~~~i~~n~~~~~~~n~i~i~la~g~~~~~~g~~l~p~-~a~~~m~~ss~~v~~~s~~l 980 (997)
||+++++|++|+.|+++||++++|+|++++ ++|| +|+++|.+||++|++||+|+
T Consensus 502 ~r~~~~~i~~nl~~a~~~N~~~i~~a~~g~-------~~p~~~aa~~m~~ss~~v~lns~r~ 556 (556)
T TIGR01525 502 SRKTRRIIKQNLAWALGYNLVAIPLAAGGL-------LPLWLLAVLLHEGSTVLVVLNSLRL 556 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHhchHHHHHHHhhcC
Confidence 999999999999999999999999998543 5896 99999999999999999985
No 7
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=3.1e-90 Score=815.92 Aligned_cols=534 Identities=40% Similarity=0.614 Sum_probs=495.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCC
Q 001906 365 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 444 (997)
Q Consensus 365 md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~ 444 (997)
||+|++++...+++++ .|++ +++++++++++++++.++++|+++.+++|.++.|.+++++++
T Consensus 1 ~~~l~~~a~~~~~~~~---------------~~~~-~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~-- 62 (536)
T TIGR01512 1 VDLLMALAALGAVAIG---------------EYLE-GALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRG-- 62 (536)
T ss_pred CcHHHHHHHHHHHHHh---------------hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEC--
Confidence 6899999998887664 3565 477888999999999999999999999999999999998864
Q ss_pred CceeeEEEEecCCCCCCCEEEecCCCcccccEEEEecceeeeccccCCCCcccccCCCCceecceEEeeeeEEEEEEEec
Q 001906 445 GKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVG 524 (997)
Q Consensus 445 g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g 524 (997)
| +++++++++|+|||+|.+++||+|||||+|++|++.||||+|||||.|+.|++|+.+|+||.+.+|.++++|+++|
T Consensus 63 g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~G~~~~~V~~~g 139 (536)
T TIGR01512 63 G---SLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTSTVDESALTGESVPVEKAPGDEVFAGAINLDGVLTIVVTKLP 139 (536)
T ss_pred C---EEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcEEEEecccCCCCCcEEeCCCCEEEeeeEECCceEEEEEEEec
Confidence 4 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhh
Q 001906 525 SDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVV 604 (997)
Q Consensus 525 ~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svl 604 (997)
.+|+++++.+++++++.+++|+|+.++++++++++++++++++.+++|++.. .+..++.++++++
T Consensus 140 ~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~svl 204 (536)
T TIGR01512 140 ADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLK---------------RWPFWVYRALVLL 204 (536)
T ss_pred cccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------ccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888776532 1223788999999
Q ss_pred hhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCCHHHHHHHHHH
Q 001906 605 VIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVAS 684 (997)
Q Consensus 605 v~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~ 684 (997)
+++|||+|++++|+++..++.+++|+||++|+++++|.++++|++|||||||||+|+|++.++.+ .+++.++++
T Consensus 205 v~~~P~aL~la~~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~------~~~l~~a~~ 278 (536)
T TIGR01512 205 VVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVP------AEVLRLAAA 278 (536)
T ss_pred hhcCccccccchHHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeH------HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864 379999999
Q ss_pred hhccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCCeEEEEEcCeEEEEeeHhhhhhcC
Q 001906 685 AEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESG 764 (997)
Q Consensus 685 ~~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~~~~~ 764 (997)
+|..+.||+++|+++++++.+ +..++++.+++|+++.++|.++.+|+++++.+.+
T Consensus 279 ~e~~~~hp~~~Ai~~~~~~~~-------------------------~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~~~~~ 333 (536)
T TIGR01512 279 AEQASSHPLARAIVDYARKRE-------------------------NVESVEEVPGEGVRAVVDGGEVRIGNPRSLEAAV 333 (536)
T ss_pred HhccCCCcHHHHHHHHHHhcC-------------------------CCcceEEecCCeEEEEECCeEEEEcCHHHHhhcC
Confidence 999999999999999987651 2344567889999999999999999999887665
Q ss_pred CCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHcCCc
Q 001906 765 ITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGV-RPVMVTGDNWRTAHAVAREIGIQ 843 (997)
Q Consensus 765 ~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi-~~~i~Tgd~~~~a~~ia~~~gi~ 843 (997)
.. .++.+|.+++++++|+.+.|.+.++|++||+++++|++|+++|+ +++|+|||+..++..+++++|++
T Consensus 334 ~~----------~~~~~~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~ 403 (536)
T TIGR01512 334 GA----------RPESAGKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGID 403 (536)
T ss_pred Cc----------chhhCCCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCCh
Confidence 32 34567889999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEec-CCcHHHHHhcCEEEecCChhhHHHHHHHHHH
Q 001906 844 DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRK 922 (997)
Q Consensus 844 ~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~ 922 (997)
++|+++.|++|.++++.++.+++.|+|+|||.||++|+++||+||++| ++++.+++.||+++.++++..+.+++++||+
T Consensus 404 ~~f~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i~~~r~ 483 (536)
T TIGR01512 404 EVHAELLPEDKLEIVKELREKYGPVAMVGDGINDAPALAAADVGIAMGASGSDVAIETADVVLLNDDLSRLPQAIRLARR 483 (536)
T ss_pred hhhhccCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHhCCEEEEeCCCccHHHHHhCCEEEECCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHHHHHhhhhhHHHhhhhhcccc
Q 001906 923 TFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRR 982 (997)
Q Consensus 923 ~~~~i~~n~~~~~~~n~i~i~la~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~ 982 (997)
+++++++|+.|++.||++++|+|+.++ ++||+|+++|.+||++|++||+|+++
T Consensus 484 ~~~~i~~nl~~a~~~n~~~i~~a~~G~-------~~p~~aa~~m~~ss~~v~~ns~r~~~ 536 (536)
T TIGR01512 484 TRRIVKQNVVIALGIILLLILLALFGV-------LPLWLAVLGHEGSTVLVILNALRLLR 536 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHcChHHHHHHHHHhhcC
Confidence 999999999999999999999997322 79999999999999999999999863
No 8
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=2.2e-86 Score=808.60 Aligned_cols=527 Identities=25% Similarity=0.380 Sum_probs=457.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEE
Q 001906 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVV 479 (997)
Q Consensus 400 ~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl 479 (997)
.+++++++++++..++.++++++++.+++|.++.|.+++|+|+ | ++++|++++|+|||+|.+++||+|||||+|+
T Consensus 57 ~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~Rd--g---~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi 131 (755)
T TIGR01647 57 DFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVLRD--G---KWQEIPASELVPGDVVRLKIGDIVPADCRLF 131 (755)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--C---EEEEEEhhhCcCCCEEEECCCCEEeceEEEE
Confidence 3556667777888888999999999999999999999998864 4 6789999999999999999999999999999
Q ss_pred ecc-eeeeccccCCCCcccccCCCCceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001906 480 WGT-SYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFV 558 (997)
Q Consensus 480 ~G~-~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (997)
+|+ ..||||+|||||.|+.|.+|+.+|+||.+.+|+++++|+++|.+|++|++.+++++++.+++|+|+.+++++.+++
T Consensus 132 ~g~~~~VDeS~LTGES~PV~K~~~~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~~~~~ 211 (755)
T TIGR01647 132 EGDYIQVDQAALTGESLPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIGLFLI 211 (755)
T ss_pred ecCceEEEcccccCCccceEeccCCeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHHHHHH
Confidence 998 7899999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecch
Q 001906 559 PIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGD 638 (997)
Q Consensus 559 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~ 638 (997)
+++++++++.+++|++.. ..+|..++.+++++++++|||+|++++|+++..+..+|+|+|+++|+++
T Consensus 212 ~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilvk~l~ 278 (755)
T TIGR01647 212 VLIGVLVLIELVVLFFGR-------------GESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIVTRLT 278 (755)
T ss_pred HHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEEcccH
Confidence 999999888888776521 1357888999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcEEEecCCCccccCceEEEEEEEcCC-CCHHHHHHHHHHh-hccCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 001906 639 ALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-MDRGEFLTLVASA-EASSEHPLAKAVVEYARHFHFFDDPSLNPDG 716 (997)
Q Consensus 639 ~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~-~~~~~~l~~~~~~-~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~ 716 (997)
++|.||.+|++|||||||||+|+|.|.+++..++ .+.++++.+++.+ +..+.||+++|+++++++.+... .
T Consensus 279 alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~~~~~~------~- 351 (755)
T TIGR01647 279 AIEELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKEAR------D- 351 (755)
T ss_pred HHHhccCCcEEEecCCCccccCceEEEEEEecCCCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhHHHH------h-
Confidence 9999999999999999999999999999987654 6777888887755 47789999999999887542000 0
Q ss_pred CCccccccCCcccccccccccccCCeEEEEE----cCeE--EEEeeHhhhhhcCC---CCChhhHHHHHHHHHcCCeEEE
Q 001906 717 QSHSKESTGSGWLLDVSDFSALPGRGIQCFI----SGKQ--VLVGNRKLLNESGI---TIPDHVESFVVELEESARTGIL 787 (997)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~----~g~~--~~ig~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~i~ 787 (997)
.....+..+|++ .+++....+ +|+. +.+|+++.+.+.+. +.++.+++..+++..+|+|+++
T Consensus 352 ---------~~~~~~~~pf~~-~~k~~~~~v~~~~~g~~~~~~kGa~e~il~~c~~~~~~~~~~~~~~~~~~~~G~rvl~ 421 (755)
T TIGR01647 352 ---------GYKVLEFVPFDP-VDKRTEATVEDPETGKRFKVTKGAPQVILDLCDNKKEIEEKVEEKVDELASRGYRALG 421 (755)
T ss_pred ---------cCceEEEeccCC-CCCeEEEEEEeCCCceEEEEEeCChHHHHHhcCCcHHHHHHHHHHHHHHHhCCCEEEE
Confidence 011122234443 355665555 2554 45799998876432 2234556667788899999999
Q ss_pred EEE-C----CeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce------------------
Q 001906 788 VAY-D----DNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------ 844 (997)
Q Consensus 788 va~-~----~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~------------------ 844 (997)
+|+ + .+++|+++|+|++||+++++|++||++|++++|+|||+..+|.++|+++||.+
T Consensus 422 vA~~~~e~~l~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~ 501 (755)
T TIGR01647 422 VARTDEEGRWHFLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYTADVLLKGDNRDDLP 501 (755)
T ss_pred EEEEcCCCCcEEEEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCcCHHHhcCCcchhhCC
Confidence 998 2 38999999999999999999999999999999999999999999999999975
Q ss_pred ------------EEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhh
Q 001906 845 ------------VMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLED 912 (997)
Q Consensus 845 ------------~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~ 912 (997)
+|+|++|+||.++|+.+|++|+.|+|+|||+||+|||++||||||||+++|.++++||++++++++..
T Consensus 502 ~~~~~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~~gtdvAkeaADivLl~d~l~~ 581 (755)
T TIGR01647 502 SGELGEMVEDADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVAGATDAARSAADIVLTEPGLSV 581 (755)
T ss_pred HHHHHHHHHhCCEEEecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEecCCcHHHHHhCCEEEEcCChHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccccCCCccHHHHH
Q 001906 913 VIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAA-GVFFPSLGIKLPPWAAG 963 (997)
Q Consensus 913 l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la~-g~~~~~~g~~l~p~~a~ 963 (997)
++.++++||+++++|++|+.|.++.|+..+...+ +.+ ++|++|+|+.=.
T Consensus 582 I~~ai~~gR~~~~ni~k~i~~~~~~n~~~~~~~~~~~l--~~~~~l~~~~il 631 (755)
T TIGR01647 582 IVDAILESRKIFQRMKSYVIYRIAETIRIVFFFGLLIL--ILNFYFPPIMVV 631 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCcchhHHHHH
Confidence 9999999999999999999999999997654332 222 124447886433
No 9
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=2.3e-84 Score=762.53 Aligned_cols=498 Identities=26% Similarity=0.375 Sum_probs=427.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCC-eEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEEecc
Q 001906 404 LITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGT 482 (997)
Q Consensus 404 l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~-~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~ 482 (997)
+++..+++.|+|.++++|+++.++.|+++.|+ +++++.|+ | ++++|++++|+|||+|++++||+||+||+|++|.
T Consensus 72 l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~rd-g---~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~ 147 (673)
T PRK14010 72 LLLTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIKQD-G---SYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGL 147 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeC-C---EEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcc
Confidence 33444689999999999999999999999986 67654444 5 6789999999999999999999999999999999
Q ss_pred eeeeccccCCCCcccccCCC---CceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 001906 483 SYVNESMVTGEAVPVLKEIN---SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVP 559 (997)
Q Consensus 483 ~~Vdes~LTGEs~pv~k~~g---~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (997)
+.||||+|||||.|+.|++| +.||+||.+.+|.++++|+++|.+|+++++.+++++++.+|+|+|.....+..
T Consensus 148 ~~VDESaLTGES~PV~K~~g~d~~~V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~~---- 223 (673)
T PRK14010 148 ATVDESAITGESAPVIKESGGDFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLLM---- 223 (673)
T ss_pred eEEecchhcCCCCceeccCCCccCeeecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHHH----
Confidence 99999999999999999999 88999999999999999999999999999999999999999999965444322
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchH
Q 001906 560 IVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDA 639 (997)
Q Consensus 560 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~ 639 (997)
.+.+.++++++|++.... ...+...+...+++++.++||+|+..+|++...++.+|+|+|+++|++++
T Consensus 224 -~l~ii~l~~~~~~~~~~~-----------~~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~gvLvk~~~a 291 (673)
T PRK14010 224 -TLTIIFLVVILTMYPLAK-----------FLNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQFNILAKSGRS 291 (673)
T ss_pred -HHhHHHHHHHHHHHHHHh-----------hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCEEEeCcHH
Confidence 222222222223221000 01234456677778888899999999999999999999999999999999
Q ss_pred HHhhcCCcEEEecCCCccccCceEEEEEEEcCCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 001906 640 LERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSH 719 (997)
Q Consensus 640 le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~ 719 (997)
+|.+|++|++|||||||||+|++.+.++.+.++.+.++++.+++.++..+.||+++|+++++++.+....
T Consensus 292 vE~lg~v~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~~a~~~~~~s~~P~~~AIv~~a~~~~~~~~---------- 361 (673)
T PRK14010 292 VETCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFERLVKAAYESSIADDTPEGRSIVKLAYKQHIDLP---------- 361 (673)
T ss_pred HHHhhCCCEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCCCch----------
Confidence 9999999999999999999999888887777666777888888888889999999999999987642100
Q ss_pred cccccCCcccccccccccc-cCCeEEEEEcCeEEEEeeHhhhhh----cCCCCChhhHHHHHHHHHcCCeEEEEEECCeE
Q 001906 720 SKESTGSGWLLDVSDFSAL-PGRGIQCFISGKQVLVGNRKLLNE----SGITIPDHVESFVVELEESARTGILVAYDDNL 794 (997)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~-~g~gi~~~~~g~~~~ig~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~ 794 (997)
....+..+|++. .++|+. ++|+.+.+|+++.+.+ .+...+.++++..+++.++|+|+++++.|+++
T Consensus 362 -------~~~~~~~pF~~~~k~~gv~--~~g~~i~kGa~~~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~v~~~~~~ 432 (673)
T PRK14010 362 -------QEVGEYIPFTAETRMSGVK--FTTREVYKGAPNSMVKRVKEAGGHIPVDLDALVKGVSKKGGTPLVVLEDNEI 432 (673)
T ss_pred -------hhhcceeccccccceeEEE--ECCEEEEECCHHHHHHHhhhcCCCCchHHHHHHHHHHhCCCeEEEEEECCEE
Confidence 000112344433 245553 5788899999998743 33445555666677888999999999999999
Q ss_pred EEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcCCEEEEEcCC
Q 001906 795 IGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDG 874 (997)
Q Consensus 795 lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg 874 (997)
+|+++++|++||+++++|++||++|++++|+|||++.+|.++|+++|++++|++++|+||.++|+.+|++|+.|+|+|||
T Consensus 433 lG~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDG 512 (673)
T PRK14010 433 LGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAKGHIVAMTGDG 512 (673)
T ss_pred EEEEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhCCCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 875 INDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVI 940 (997)
Q Consensus 875 ~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i 940 (997)
.||+|||++||||||||+|+|.++++||+|++++|+..+++++++||+++.|+++.+.|.++.|+.
T Consensus 513 vNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~ls~Iv~av~~gR~i~~n~~~~~~f~~~~~~~ 578 (673)
T PRK14010 513 TNDAPALAEANVGLAMNSGTMSAKEAANLIDLDSNPTKLMEVVLIGKQLLMTRGSLTTFSIANDIA 578 (673)
T ss_pred hhhHHHHHhCCEEEEeCCCCHHHHHhCCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHheeeeccHH
Confidence 999999999999999999999999999999999999999999999999999999999999998875
No 10
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=2.9e-83 Score=753.92 Aligned_cols=501 Identities=27% Similarity=0.385 Sum_probs=431.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCC-eEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEE
Q 001906 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIV 478 (997)
Q Consensus 400 ~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~-~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~v 478 (997)
...++++.++++.++|.+++.|+++.+++|.++.|. ++++++++ + ++++|++++|+|||+|+|++||+||+||+|
T Consensus 68 i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vir~g-~---~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~v 143 (679)
T PRK01122 68 ITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKLREP-G---AAEEVPATELRKGDIVLVEAGEIIPADGEV 143 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECC-C---EEEEEEHHHcCCCCEEEEcCCCEEEEEEEE
Confidence 345566667899999999999999999999999886 68887543 2 368899999999999999999999999999
Q ss_pred EecceeeeccccCCCCcccccCCCCc---eecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 001906 479 VWGTSYVNESMVTGEAVPVLKEINSP---VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVAS 555 (997)
Q Consensus 479 l~G~~~Vdes~LTGEs~pv~k~~g~~---v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 555 (997)
++|.+.||||+|||||.|+.|++|+. ||+||.+.+|.++++|+++|.+|+++++.+++++++.+|+|+|...+.+..
T Consensus 144 ieG~a~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l~~ 223 (679)
T PRK01122 144 IEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTILLA 223 (679)
T ss_pred EEccEEEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 99999999999999999999999988 999999999999999999999999999999999999999999987777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEe
Q 001906 556 IFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIK 635 (997)
Q Consensus 556 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk 635 (997)
++..+.+++++..+.++++. + .. .++.+++++++++|||+++.++|.....++.+|+|+|+++|
T Consensus 224 ~l~~i~l~~~~~~~~~~~~~---g-----------~~--~~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~gvLvk 287 (679)
T PRK01122 224 GLTIIFLLVVATLPPFAAYS---G-----------GA--LSITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQANVIAT 287 (679)
T ss_pred hhhHHHHHHHHHHHHHHHHh---C-----------ch--HHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcCCeeec
Confidence 65544433332222211111 0 11 26788899999999999999999999999999999999999
Q ss_pred cchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhc-CCCCCCCCCC
Q 001906 636 GGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHF-HFFDDPSLNP 714 (997)
Q Consensus 636 ~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~~p~~~ai~~~~~~~-~~~~~~~~~~ 714 (997)
+++++|.+|++|++|||||||||+|++.+.++++.++.+.++++.+++.++..+.||.++|++++++.. +... . .
T Consensus 288 ~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~a~~~s~~s~hP~~~AIv~~a~~~~~~~~-~---~ 363 (679)
T PRK01122 288 SGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPGVTEEELADAAQLSSLADETPEGRSIVVLAKQRFNLRE-R---D 363 (679)
T ss_pred CchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHHHHHHhcCCCCCchHHHHHHHHHhhcCCCc-h---h
Confidence 999999999999999999999999999999999888888888999999999999999999999998762 2100 0 0
Q ss_pred CCCCccccccCCcccccccccccccC-CeEEEEEcCeEEEEeeHhhh----hhcCCCCChhhHHHHHHHHHcCCeEEEEE
Q 001906 715 DGQSHSKESTGSGWLLDVSDFSALPG-RGIQCFISGKQVLVGNRKLL----NESGITIPDHVESFVVELEESARTGILVA 789 (997)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~gi~~~~~g~~~~ig~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~i~va 789 (997)
. .....+..+|++..+ .|+ .++|+.+.+|+++.+ .+.+...|+++++..+++.++|.|+++++
T Consensus 364 ~----------~~~~~~~~pF~s~~~~~gv--~~~g~~~~kGa~e~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~va 431 (679)
T PRK01122 364 L----------QSLHATFVPFSAQTRMSGV--DLDGREIRKGAVDAIRRYVESNGGHFPAELDAAVDEVARKGGTPLVVA 431 (679)
T ss_pred h----------ccccceeEeecCcCceEEE--EECCEEEEECCHHHHHHHHHhcCCcChHHHHHHHHHHHhCCCcEEEEE
Confidence 0 000122334554433 232 357889999998644 44566667777777788899999999999
Q ss_pred ECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcCCEEE
Q 001906 790 YDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVA 869 (997)
Q Consensus 790 ~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~ 869 (997)
+|++++|+++++|++|||+++++++||++|++++|+|||++.+|.++|+++|+++++++++|+||.++|+.+|++|+.|+
T Consensus 432 ~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~PedK~~iV~~lQ~~G~~Va 511 (679)
T PRK01122 432 EDNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPEDKLALIRQEQAEGRLVA 511 (679)
T ss_pred ECCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHHHHHHHHHHHHcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 870 MVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMA 936 (997)
Q Consensus 870 ~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~ 936 (997)
|+|||.||+|||++||||||||+|++.++++||++++++|+..+.+++++||+++-+--.-..|++.
T Consensus 512 MtGDGvNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~~s~Iv~av~~GR~~~~tr~~~~~f~~~ 578 (679)
T PRK01122 512 MTGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVEIGKQLLMTRGALTTFSIA 578 (679)
T ss_pred EECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHhhhHhhhhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999444443556655
No 11
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=1.2e-82 Score=783.97 Aligned_cols=513 Identities=22% Similarity=0.274 Sum_probs=437.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCC----CceeeEEEEecCCCCCCCEEEecCCCccccc
Q 001906 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK----GKCIEEREIDALLIQSGDTLKVLPGTKLPAD 475 (997)
Q Consensus 400 ~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~----g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD 475 (997)
.+++++++++++.+++.++++|+.+.+++|.++.|.+++|+|+++ | ++++|++++|+|||+|.+++||+||||
T Consensus 124 ~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~~~g---~~~~I~~~eLvpGDiV~l~~Gd~IPaD 200 (902)
T PRK10517 124 AAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGEN---GWLEIPIDQLVPGDIIKLAAGDMIPAD 200 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCccCCCC---eEEEEEHHhCCCCCEEEECCCCEEeee
Confidence 466777888899999999999999999999999999999987532 3 678999999999999999999999999
Q ss_pred EEEEecce-eeeccccCCCCcccccCCCC-------------ceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhc
Q 001906 476 GIVVWGTS-YVNESMVTGEAVPVLKEINS-------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM 541 (997)
Q Consensus 476 ~~vl~G~~-~Vdes~LTGEs~pv~k~~g~-------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~ 541 (997)
|+|++|+. .||||+|||||.|+.|.+++ .+|+||.+.+|.++++|++||.+|.+|++.+++++++.
T Consensus 201 g~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~v~~~~~ 280 (902)
T PRK10517 201 LRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVSEQDS 280 (902)
T ss_pred EEEEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHHhhccCC
Confidence 99999985 79999999999999998874 69999999999999999999999999999999999888
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHH
Q 001906 542 SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVM 621 (997)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~ 621 (997)
+++|+|+.++++++++++++++++.++++++.+.. .+|..++.+++++++++|||+|++++++++.
T Consensus 281 ~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~~--------------~~~~~~l~~alsv~V~~~Pe~LP~~vt~~la 346 (902)
T PRK10517 281 EPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTK--------------GDWWEAALFALSVAVGLTPEMLPMIVTSTLA 346 (902)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhc--------------CCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999999999999988888887776654321 2577889999999999999999999999999
Q ss_pred HHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCCHHHHHHHHHHh---hccCCCHHHHHHH
Q 001906 622 VATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASA---EASSEHPLAKAVV 698 (997)
Q Consensus 622 ~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~---~~~s~~p~~~ai~ 698 (997)
.+..+|+|+|+++|+++++|.+|++|+||||||||||+|+|.|.++....+.+.++++.+++.. +....||++.|++
T Consensus 347 ~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~~~~~~~~ll~~a~l~~~~~~~~~~p~d~All 426 (902)
T PRK10517 347 RGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNLLDTAVL 426 (902)
T ss_pred HHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEecCCCCCHHHHHHHHHhcCCcCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999987655555567777766542 2345899999999
Q ss_pred HHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCCeEEEEEc---Ce--EEEEeeHhhhhhcC-------C-
Q 001906 699 EYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFIS---GK--QVLVGNRKLLNESG-------I- 765 (997)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~---g~--~~~ig~~~~~~~~~-------~- 765 (997)
++++..+.... .. ........+|++.. ++....++ +. .+..|+++.+.+.+ .
T Consensus 427 ~~a~~~~~~~~----~~----------~~~~~~~~pFds~~-k~msvvv~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~ 491 (902)
T PRK10517 427 EGVDEESARSL----AS----------RWQKIDEIPFDFER-RRMSVVVAENTEHHQLICKGALEEILNVCSQVRHNGEI 491 (902)
T ss_pred HHHHhcchhhh----hh----------cCceEEEeeeCCCc-ceEEEEEEECCCeEEEEEeCchHHHHHhchhhhcCCCe
Confidence 98865320000 00 00001112333333 22333221 22 35567776554321 1
Q ss_pred -CCCh----hhHHHHHHHHHcCCeEEEEEE----------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEE
Q 001906 766 -TIPD----HVESFVVELEESARTGILVAY----------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVM 824 (997)
Q Consensus 766 -~~~~----~~~~~~~~~~~~g~~~i~va~----------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i 824 (997)
++.+ .+.+..+++..+|+|++++|+ |++++|+++|+|++||+++++|++|+++|++++|
T Consensus 492 ~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~e~~l~~lGli~~~Dp~R~~a~~aI~~l~~aGI~v~m 571 (902)
T PRK10517 492 VPLDDIMLRRIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGVTVKI 571 (902)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCccccccccccccCceeeehHhhhCcchhhHHHHHHHHHHCCCEEEE
Confidence 1222 233445678889999999997 4589999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHcCCc-------------------------eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHH
Q 001906 825 VTGDNWRTAHAVAREIGIQ-------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSP 879 (997)
Q Consensus 825 ~Tgd~~~~a~~ia~~~gi~-------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~ 879 (997)
+|||+..+|.++|+++||. .+|+|++|+||.++|+.+|++|+.|+|+|||+||+|
T Consensus 572 iTGD~~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~G~vVam~GDGvNDaP 651 (902)
T PRK10517 572 LTGDSELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAP 651 (902)
T ss_pred EcCCCHHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHHHHHHHHHHCCCEEEEECCCcchHH
Confidence 9999999999999999997 799999999999999999999999999999999999
Q ss_pred HHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 880 ALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPI 944 (997)
Q Consensus 880 al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~l 944 (997)
||++||||||||+|+|.++++||+|++++++..|++++++||++++||++++.|.+..|+..+..
T Consensus 652 ALk~ADVGIAmg~gtdvAkeaADiVLldd~~~~I~~ai~~gR~i~~nI~k~i~~~ls~n~~~v~~ 716 (902)
T PRK10517 652 ALRAADIGISVDGAVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVFS 716 (902)
T ss_pred HHHhCCEEEEeCCcCHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999965543
No 12
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=8.7e-82 Score=777.49 Aligned_cols=511 Identities=22% Similarity=0.295 Sum_probs=434.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEc---C-CCceeeEEEEecCCCCCCCEEEecCCCccccc
Q 001906 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVK---D-KGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 475 (997)
Q Consensus 400 ~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~---~-~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD 475 (997)
.+++++++++++.+++.+++.|+++.+++|.++.+..++|+|+ + +| ++++|++++|+|||+|.+++||+||||
T Consensus 90 ~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~dg---~~~~I~~~eLv~GDiV~l~~Gd~VPaD 166 (867)
T TIGR01524 90 ATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVLRVINENGNG---SMDEVPIDALVPGDLIELAAGDIIPAD 166 (867)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEEEecccCCCC---eEEEEEhhcCCCCCEEEECCCCEEccc
Confidence 4666777778888888888888889999999998999998872 0 25 678999999999999999999999999
Q ss_pred EEEEecce-eeeccccCCCCcccccCCCC-------------ceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhc
Q 001906 476 GIVVWGTS-YVNESMVTGEAVPVLKEINS-------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM 541 (997)
Q Consensus 476 ~~vl~G~~-~Vdes~LTGEs~pv~k~~g~-------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~ 541 (997)
|+|++|+. .||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|++||.+|.+|++.+++++ ..
T Consensus 167 g~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~-~~ 245 (867)
T TIGR01524 167 ARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATE-RR 245 (867)
T ss_pred EEEEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhC-CC
Confidence 99999986 79999999999999998875 59999999999999999999999999999999988 77
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHH
Q 001906 542 SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVM 621 (997)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~ 621 (997)
+++|+|+.++++++++.+++++++.+++++|.+.. .+|..++.+++++++++|||+|++++++++.
T Consensus 246 ~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~al~l~v~~iP~~Lp~~vt~~la 311 (867)
T TIGR01524 246 GQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMK--------------GDWLEAFLFALAVAVGLTPEMLPMIVSSNLA 311 (867)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHheehHHHhc--------------CCHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 78999999999999999999988888777654321 2577889999999999999999999999999
Q ss_pred HHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCCHHHHHHHHHH---hhccCCCHHHHHHH
Q 001906 622 VATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVAS---AEASSEHPLAKAVV 698 (997)
Q Consensus 622 ~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~---~~~~s~~p~~~ai~ 698 (997)
.+..+|+|+|+++|++.++|.+|++|+||||||||||+|+|+|.++...++.+.++++.+++. .+..++||++.|++
T Consensus 312 ~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~~~~~~~~~l~~a~l~~~~~~~~~~p~~~Al~ 391 (867)
T TIGR01524 312 KGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDSSGETSERVLKMAWLNSYFQTGWKNVLDHAVL 391 (867)
T ss_pred HHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEecCCCCCHHHHHHHHHHhCCCCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999876666666777776653 22345799999999
Q ss_pred HHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCCeEEEEEcC-----eEEEEeeHhhhhhcCC--------
Q 001906 699 EYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISG-----KQVLVGNRKLLNESGI-------- 765 (997)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g-----~~~~ig~~~~~~~~~~-------- 765 (997)
+++....... ... ........+|++. +++..+.+++ ..+..|+++.+.+.+.
T Consensus 392 ~~~~~~~~~~----~~~----------~~~~~~~~pF~s~-~k~ms~~v~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~ 456 (867)
T TIGR01524 392 AKLDESAARQ----TAS----------RWKKVDEIPFDFD-RRRLSVVVENRAEVTRLICKGAVEEMLTVCTHKRFGGAV 456 (867)
T ss_pred HHHHhhchhh----Hhh----------cCceEEEeccCCC-cCEEEEEEEcCCceEEEEEeCcHHHHHHhchhhhcCCce
Confidence 9886531000 000 0001111234433 3444444433 1356688776644221
Q ss_pred -CCC----hhhHHHHHHHHHcCCeEEEEEE----------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEE
Q 001906 766 -TIP----DHVESFVVELEESARTGILVAY----------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVM 824 (997)
Q Consensus 766 -~~~----~~~~~~~~~~~~~g~~~i~va~----------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i 824 (997)
.++ +.+++..+++..+|+|++++|+ |++++|+++|+|++|++++++|++||++|++++|
T Consensus 457 ~~l~~~~~~~i~~~~~~~a~~G~rvlavA~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~~~~aI~~l~~aGI~vvm 536 (867)
T TIGR01524 457 VTLSESEKSELQDMTAEMNRQGIRVIAVATKTLKVGEADFTKTDEEQLIIEGFLGFLDPPKESTKEAIAALFKNGINVKV 536 (867)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEEEeccCcccccccccccCCcEEEEEEEeeCCCchhHHHHHHHHHHCCCEEEE
Confidence 111 2344556678899999999998 2379999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHcCCc-------------------------eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHH
Q 001906 825 VTGDNWRTAHAVAREIGIQ-------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSP 879 (997)
Q Consensus 825 ~Tgd~~~~a~~ia~~~gi~-------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~ 879 (997)
+|||+..+|.++|+++||. .+|+|++|+||.++|+.+|++|+.|+|+|||.||+|
T Consensus 537 iTGD~~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGvNDap 616 (867)
T TIGR01524 537 LTGDNEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAP 616 (867)
T ss_pred EcCCCHHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHHHHHHHHhCCCEEEEECCCcccHH
Confidence 9999999999999999998 799999999999999999999999999999999999
Q ss_pred HHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 880 ALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIP 943 (997)
Q Consensus 880 al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~ 943 (997)
||++||||||||+|+|.++++||+|+++++|+.++.++++||+++++|++|+.|.+..|+..+.
T Consensus 617 ALk~AdVGIAmg~gtdvAk~aADiVLldd~~~~I~~ai~~gR~i~~ni~k~i~~~ls~n~~~~~ 680 (867)
T TIGR01524 617 ALRKADVGISVDTAADIAKEASDIILLEKSLMVLEEGVIEGRNTFGNILKYLKMTASSNFGNVF 680 (867)
T ss_pred HHHhCCEEEEeCCccHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988875443
No 13
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=6.6e-81 Score=731.92 Aligned_cols=508 Identities=28% Similarity=0.410 Sum_probs=435.7
Q ss_pred chhhhH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCe-EEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcc
Q 001906 396 TYFETS--AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-ALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKL 472 (997)
Q Consensus 396 ~~~~~~--~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~-~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~i 472 (997)
.||+.+ +.+++.++++.++|.+++.|+++.+++|.++.|+. +++++++ | ++++|++++|+|||+|++++||+|
T Consensus 63 ~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr~d-g---~~~~V~~~~L~~GDiV~V~~Gd~I 138 (675)
T TIGR01497 63 ALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLRDD-G---AIDKVPADQLKKGDIVLVEAGDVI 138 (675)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeC-C---EEEEEEHHHCCCCCEEEECCCCEE
Confidence 466554 33444568999999999999999999999988875 6666543 5 678999999999999999999999
Q ss_pred cccEEEEecceeeeccccCCCCcccccCCCCc---eecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHH
Q 001906 473 PADGIVVWGTSYVNESMVTGEAVPVLKEINSP---VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKF 549 (997)
Q Consensus 473 PaD~~vl~G~~~Vdes~LTGEs~pv~k~~g~~---v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~ 549 (997)
|+||+|++|++.||||+|||||.|+.|++|+. ||+||.+.+|.++++|+++|.+|+++++.+++++++.+|+|+|..
T Consensus 139 PaDG~vieG~~~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~~ 218 (675)
T TIGR01497 139 PCDGEVIEGVASVDESAITGESAPVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEIA 218 (675)
T ss_pred eeeEEEEEccEEEEcccccCCCCceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHHH
Confidence 99999999999999999999999999999975 999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHh
Q 001906 550 ADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGAN 629 (997)
Q Consensus 550 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~ 629 (997)
.+.+..++..+.+ ++. +.+|.+..+ . ....++...+++++++|||+++...|.....++.+++|
T Consensus 219 l~~l~~~l~~v~l-i~~--~~~~~~~~~-~------------~~~~~~~~lvallV~aiP~aLg~l~~av~iag~~r~ar 282 (675)
T TIGR01497 219 LTILLIALTLVFL-LVT--ATLWPFAAY-G------------GNAISVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVLG 282 (675)
T ss_pred HHHHHHHHHHHHH-HHH--HHHHHHHHh-c------------ChhHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHH
Confidence 7766654433322 222 222332211 0 11235677899999999999999999888899999999
Q ss_pred cCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhcCCCCC
Q 001906 630 NGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDD 709 (997)
Q Consensus 630 ~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~~p~~~ai~~~~~~~~~~~~ 709 (997)
+|+++|+++++|.+|++|++|||||||||+|+|++.++.+.++.+.++++.+++.++..++||.++|+++++++.+....
T Consensus 283 ~gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~aa~~~~~s~hP~a~Aiv~~a~~~~~~~~ 362 (675)
T TIGR01497 283 FNVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQGVDEKTLADAAQLASLADDTPEGKSIVILAKQLGIRED 362 (675)
T ss_pred CCeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999888778888999999999999999999999999987542110
Q ss_pred CCCCCCCCCccccccCCcccccccccccccCCeEEE--EEcCeEEEEeeHhhh----hhcCCCCChhhHHHHHHHHHcCC
Q 001906 710 PSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQC--FISGKQVLVGNRKLL----NESGITIPDHVESFVVELEESAR 783 (997)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~--~~~g~~~~ig~~~~~----~~~~~~~~~~~~~~~~~~~~~g~ 783 (997)
. . .....+..+|+... ++.+ ..+|+.+.+|+++.+ .+.+...|.++++..+++.++|.
T Consensus 363 ~-~-------------~~~~~~~~pf~~~~--~~sg~~~~~g~~~~kGa~e~i~~~~~~~g~~~~~~~~~~~~~~a~~G~ 426 (675)
T TIGR01497 363 D-V-------------QSLHATFVEFTAQT--RMSGINLDNGRMIRKGAVDAIKRHVEANGGHIPTDLDQAVDQVARQGG 426 (675)
T ss_pred c-c-------------ccccceEEEEcCCC--cEEEEEEeCCeEEEECCHHHHHHHHHhcCCCCcHHHHHHHHHHHhCCC
Confidence 0 0 00011233444432 3333 247889999998544 45566667777777888999999
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhh
Q 001906 784 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQK 863 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~ 863 (997)
|++++++|++++|+++++|++||++++++++||++|++++|+|||+..+|.++|+++|+++++++++|++|.++++.+|+
T Consensus 427 r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~~PedK~~~v~~lq~ 506 (675)
T TIGR01497 427 TPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEATPEDKIALIRQEQA 506 (675)
T ss_pred eEEEEEECCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 864 DGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 939 (997)
Q Consensus 864 ~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~ 939 (997)
+|+.|+|+|||.||+|||++|||||+|+++++.++++||++++++|++.+.+++++||+++-+......|+++-++
T Consensus 507 ~g~~VamvGDG~NDapAL~~AdvGiAm~~gt~~akeaadivLldd~~s~Iv~av~~GR~~~~t~~~~~t~~~~~~~ 582 (675)
T TIGR01497 507 EGKLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDLDSDPTKLIEVVHIGKQLLITRGALTTFSIANDV 582 (675)
T ss_pred cCCeEEEECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEECCCCHHHHHHHHHHHHHHHHHHHHHheeeecccH
Confidence 9999999999999999999999999999999999999999999999999999999999999888888888876554
No 14
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=2.1e-81 Score=774.28 Aligned_cols=515 Identities=23% Similarity=0.309 Sum_probs=430.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCC-CceeeEEEEecCCCCCCCEEEecCCCcccccEE
Q 001906 399 ETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK-GKCIEEREIDALLIQSGDTLKVLPGTKLPADGI 477 (997)
Q Consensus 399 ~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~-g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~ 477 (997)
..+++++++++++.+++.++++|+.+.+++|.++.+.+++|+|++. |...++++|++++|+|||+|.|++||+|||||+
T Consensus 112 ~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~ 191 (903)
T PRK15122 112 TGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVR 191 (903)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEE
Confidence 3466677888889999999999999999999999999999886531 000157899999999999999999999999999
Q ss_pred EEecce-eeeccccCCCCcccccCC-----------------------CCceecceEEeeeeEEEEEEEecCchHHHHHH
Q 001906 478 VVWGTS-YVNESMVTGEAVPVLKEI-----------------------NSPVIGGTINLHGVLHIQATKVGSDAVLSQII 533 (997)
Q Consensus 478 vl~G~~-~Vdes~LTGEs~pv~k~~-----------------------g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~ 533 (997)
|++|+. .||||+|||||.|+.|.+ ++.+|+||.+.+|.++++|+++|.+|.+|++.
T Consensus 192 li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~ 271 (903)
T PRK15122 192 LIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLA 271 (903)
T ss_pred EEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHH
Confidence 999986 699999999999999975 36899999999999999999999999999999
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccch
Q 001906 534 SLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALG 613 (997)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~ 613 (997)
+++++ ...++|+|+..+++.+++..+.+.++.+++++.++. ..+|..++.+++++++++|||+|+
T Consensus 272 ~~v~~-~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~--------------~~~~~~~l~~aisl~V~~~Pe~Lp 336 (903)
T PRK15122 272 KSIVG-TRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFT--------------KGDWLEALLFALAVAVGLTPEMLP 336 (903)
T ss_pred HHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--------------cCCHHHHHHHHHHHHHHHccchHH
Confidence 99987 566789999999999888777766655554433221 135788899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCCHHHHHHHHHHh---hccCC
Q 001906 614 LATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASA---EASSE 690 (997)
Q Consensus 614 la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~---~~~s~ 690 (997)
+++|+++..+..+|+|+|+++|++.++|.||++|+||||||||||+|+|.|.+++..++.++++++.+++.. +..++
T Consensus 337 ~~vt~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~~~~~~~~~l~~a~l~s~~~~~~~ 416 (903)
T PRK15122 337 MIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDVSGRKDERVLQLAWLNSFHQSGMK 416 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcCCCCChHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999998876665666777766532 34467
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCCe-EEEEE-cCeEE--EEeeHhhhhhc---
Q 001906 691 HPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRG-IQCFI-SGKQV--LVGNRKLLNES--- 763 (997)
Q Consensus 691 ~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-i~~~~-~g~~~--~ig~~~~~~~~--- 763 (997)
||++.|+++++.+.+.... .. ........+|++..++. +.... +|+.+ ..|+++.+.+.
T Consensus 417 ~p~e~All~~a~~~~~~~~----~~----------~~~~~~~~pF~s~~k~ms~v~~~~~~~~~~~~KGa~e~il~~c~~ 482 (903)
T PRK15122 417 NLMDQAVVAFAEGNPEIVK----PA----------GYRKVDELPFDFVRRRLSVVVEDAQGQHLLICKGAVEEMLAVATH 482 (903)
T ss_pred ChHHHHHHHHHHHcCchhh----hh----------cCceEEEeeeCCCcCEEEEEEEcCCCcEEEEECCcHHHHHHhchh
Confidence 9999999999987542100 00 00011122344444332 11111 45443 34887755332
Q ss_pred ----CC--CCCh----hhHHHHHHHHHcCCeEEEEEE------------------CCeEEEEEEecCCCcHhHHHHHHHH
Q 001906 764 ----GI--TIPD----HVESFVVELEESARTGILVAY------------------DDNLIGVMGIADPVKREAAVVVEGL 815 (997)
Q Consensus 764 ----~~--~~~~----~~~~~~~~~~~~g~~~i~va~------------------~~~~lG~i~~~d~~~~~~~~~i~~l 815 (997)
+. ++++ .+.+..+++..+|+|++++|+ |++++|+++++|++||+++++|++|
T Consensus 483 ~~~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~a~~aI~~l 562 (903)
T PRK15122 483 VRDGDTVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGGESRAQYSTADERDLVIRGFLTFLDPPKESAAPAIAAL 562 (903)
T ss_pred hhcCCCeecCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccCccccccccccccccCcEEEEEEeccCccHHHHHHHHHHH
Confidence 21 2222 233456678899999999996 3489999999999999999999999
Q ss_pred HHCCCeEEEEcCCCHHHHHHHHHHcCCc-------------------------eEEeccChhhHHHHHHHHhhcCCEEEE
Q 001906 816 LKMGVRPVMVTGDNWRTAHAVAREIGIQ-------------------------DVMADVMPAGKADAVRSFQKDGSIVAM 870 (997)
Q Consensus 816 ~~~gi~~~i~Tgd~~~~a~~ia~~~gi~-------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~ 870 (997)
|++||+++|+|||+..+|.++|+++||. .+|+|++|+||.++|+.||++|+.|+|
T Consensus 563 ~~aGI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~G~vVam 642 (903)
T PRK15122 563 RENGVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRVLKALQANGHTVGF 642 (903)
T ss_pred HHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999997 799999999999999999999999999
Q ss_pred EcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 871 VGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAI 942 (997)
Q Consensus 871 vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i 942 (997)
+|||+||+|||++||||||||+|+|.++++||+|+++++|+.+++++++||++++||++++.|.+..|+..+
T Consensus 643 tGDGvNDaPALk~ADVGIAmg~gtdvAkeaADiVLldd~f~~Iv~ai~~gR~i~~nI~k~i~~~ls~n~~~~ 714 (903)
T PRK15122 643 LGDGINDAPALRDADVGISVDSGADIAKESADIILLEKSLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNV 714 (903)
T ss_pred ECCCchhHHHHHhCCEEEEeCcccHHHHHhcCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997654
No 15
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=6.7e-79 Score=761.54 Aligned_cols=564 Identities=24% Similarity=0.331 Sum_probs=439.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc-CCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccc
Q 001906 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVEL-APATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPA 474 (997)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~-~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPa 474 (997)
.|++. .++++.+++.-.+..+++.++++.++++.+. .+.+++|+|+ | ++++|++++|+|||+|.|++||+|||
T Consensus 127 ~~~~~-~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRd--G---~~~~I~~~~Lv~GDiV~l~~Gd~IPa 200 (941)
T TIGR01517 127 GWIEG-VAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRG--G---QEQQISIHDIVVGDIVSLSTGDVVPA 200 (941)
T ss_pred chHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEEC--C---EEEEEeHHHCCCCCEEEECCCCEecc
Confidence 34443 3333333333344445555556666666553 4667777754 5 68999999999999999999999999
Q ss_pred cEEEEec-ceeeeccccCCCCcccccCCCCc--eecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHH
Q 001906 475 DGIVVWG-TSYVNESMVTGEAVPVLKEINSP--VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFAD 551 (997)
Q Consensus 475 D~~vl~G-~~~Vdes~LTGEs~pv~k~~g~~--v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~ 551 (997)
||+|++| ++.||||+|||||.|+.|.+++. +|+||.+.+|.++++|+++|.+|.+|++.+++++++ +++|+|+.++
T Consensus 201 D~~li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~-~~t~l~~~~~ 279 (941)
T TIGR01517 201 DGVFISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEG-EDTPLQEKLS 279 (941)
T ss_pred cEEEEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCC-CCCcHHHHHH
Confidence 9999999 78899999999999999998876 999999999999999999999999999999998765 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--ccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHh
Q 001906 552 FVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQ--WLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGAN 629 (997)
Q Consensus 552 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~ 629 (997)
++.+++.+++++++++.+++|++.......... .......++..++.+++++++++|||+|++++|+++..++.+|+|
T Consensus 280 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~mak 359 (941)
T TIGR01517 280 ELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMMK 359 (941)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHh
Confidence 999999999998888888776542211100000 000112357788999999999999999999999999999999999
Q ss_pred cCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCC-C-----------HHHHHHHHHHhh-----------
Q 001906 630 NGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM-D-----------RGEFLTLVASAE----------- 686 (997)
Q Consensus 630 ~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~-~-----------~~~~l~~~~~~~----------- 686 (997)
+|+++|+++++|.||++|+||||||||||+|+|.|.+++..++. + ..+++..++.+.
T Consensus 360 ~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~ 439 (941)
T TIGR01517 360 DNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQRFNVRDVLRNVPKHVRNILVEGISLNSSSEEVVDRGG 439 (941)
T ss_pred CCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEecceEecCcccccCCHHHHHHHHHHHHhCCCCccccCCCC
Confidence 99999999999999999999999999999999999998764321 0 112222222211
Q ss_pred --ccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCccccccccccccc-CCeEEEEEcCe---EEEEeeHhhh
Q 001906 687 --ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALP-GRGIQCFISGK---QVLVGNRKLL 760 (997)
Q Consensus 687 --~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~gi~~~~~g~---~~~ig~~~~~ 760 (997)
...++|++.|+++++++.+..... .. .........+|++.. ++++....++. .+..|+++.+
T Consensus 440 ~~~~~g~p~e~All~~~~~~~~~~~~---------~~---~~~~~~~~~pF~s~~k~msvv~~~~~~~~~~~~KGA~e~i 507 (941)
T TIGR01517 440 KRAFIGSKTECALLGFLLLLGRDYQE---------VR---AEEKVVKIYPFNSERKFMSVVVKHSGGKVREFRKGASEIV 507 (941)
T ss_pred ccccCCCccHHHHHHHHHHcCCCHHH---------HH---hhchhccccccCCCCCeEEEEEEeCCCcEEEEEECChHHH
Confidence 113578899999998765421000 00 001112334555433 33444443332 2344655444
Q ss_pred hh--------cCCC--CC---hhhHHHHHHHHHcCCeEEEEEE----------------CCeEEEEEEecCCCcHhHHHH
Q 001906 761 NE--------SGIT--IP---DHVESFVVELEESARTGILVAY----------------DDNLIGVMGIADPVKREAAVV 811 (997)
Q Consensus 761 ~~--------~~~~--~~---~~~~~~~~~~~~~g~~~i~va~----------------~~~~lG~i~~~d~~~~~~~~~ 811 (997)
.. ++.. ++ +.+.+..+++..+|+|++++|+ |++++|+++++|++|++++++
T Consensus 508 l~~c~~~~~~~g~~~~~~~~~~~i~~~~~~~a~~G~Rvl~~A~~~~~~~~~~~~~~~e~~l~~lGli~~~Dplr~~~~~a 587 (941)
T TIGR01517 508 LKPCRKRLDSNGEATPISDDKDRCADVIEPLASDALRTICLAYRDFAPEEFPRKDYPNGGLTLIGVVGIKDPLRPGVREA 587 (941)
T ss_pred HHhhhHHhhcCCCcccCcHHHHHHHHHHHHHHhcCCEEEEEEEEecCccccccccccccCcEEEEEeeccCCCchhHHHH
Confidence 32 2222 11 2345566778999999999997 338999999999999999999
Q ss_pred HHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc---------------------------eEEeccChhhHHHHHHHHhhc
Q 001906 812 VEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---------------------------DVMADVMPAGKADAVRSFQKD 864 (997)
Q Consensus 812 i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~---------------------------~~~~~~~p~~K~~~v~~l~~~ 864 (997)
|++||++|++++|+|||+..+|.++|+++||. .+|+|++|+||.++|+.+|++
T Consensus 588 I~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~~iV~~lq~~ 667 (941)
T TIGR01517 588 VQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQLLVLMLKDM 667 (941)
T ss_pred HHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999996 699999999999999999999
Q ss_pred CCEEEEEcCCcCCHHHHhcCCeeEEec-CCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 865 GSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIP 943 (997)
Q Consensus 865 g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~ 943 (997)
|+.|+|+|||+||+|||++|||||||| +|+|.++++||+++++++|+.+++++++||++++++++|+.|++++|+..++
T Consensus 668 g~vVam~GDGvNDapALk~AdVGIAmg~~gtdvAk~aADivL~dd~f~~I~~~i~~gR~~~~ni~k~i~~~l~~n~~~i~ 747 (941)
T TIGR01517 668 GEVVAVTGDGTNDAPALKLADVGFSMGISGTEVAKEASDIILLDDNFASIVRAVKWGRNVYDNIRKFLQFQLTVNVVAVI 747 (941)
T ss_pred CCEEEEECCCCchHHHHHhCCcceecCCCccHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 8999999999999999999999999999999999999999999999999988
Q ss_pred HHh-hhhccccCCCccHHHHHHHhhhhhHHHhhhhhcccc
Q 001906 944 IAA-GVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRR 982 (997)
Q Consensus 944 la~-g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~ 982 (997)
+++ |.++ +. -.|+.+.-+..+.-+...+.++.|..
T Consensus 748 ~~~~~~~~---~~-~~pl~~~qil~inl~~d~~~al~l~~ 783 (941)
T TIGR01517 748 LTFVGSCI---SS-TSPLTAVQLLWVNLIMDTLAALALAT 783 (941)
T ss_pred HHHHHHHH---hc-cccHHHHHHHHHHHHHHHhhHHHHcc
Confidence 776 3332 11 13555555566666666677776653
No 16
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=6.6e-79 Score=757.05 Aligned_cols=538 Identities=24% Similarity=0.345 Sum_probs=432.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEEecc-eeee
Q 001906 408 VLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGT-SYVN 486 (997)
Q Consensus 408 ~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~-~~Vd 486 (997)
+++...+..++++++++.+++|.++.|.+++|+|+ | ++++|++++|+|||+|.+++||+|||||+|++|+ ..||
T Consensus 90 i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~ViRd--g---~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~~l~VD 164 (884)
T TIGR01522 90 ILIVVTVGFVQEYRSEKSLEALNKLVPPECHLIRE--G---KLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSID 164 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEC--C---EEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcCceEEE
Confidence 33344455556667788899999999999998864 4 6799999999999999999999999999999996 6899
Q ss_pred ccccCCCCcccccCCCC--------------ceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHH
Q 001906 487 ESMVTGEAVPVLKEINS--------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADF 552 (997)
Q Consensus 487 es~LTGEs~pv~k~~g~--------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~ 552 (997)
||+|||||.|+.|.+++ .+|+||.+.+|.++++|+++|.+|.+|++.+++++++.+++|+|+.+++
T Consensus 165 ES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~kt~lq~~l~~ 244 (884)
T TIGR01522 165 ESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPKTPLQKSMDL 244 (884)
T ss_pred cccccCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCCCCCCcHHHHHHH
Confidence 99999999999998864 7999999999999999999999999999999999989899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCc
Q 001906 553 VASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGV 632 (997)
Q Consensus 553 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gi 632 (997)
++.++++++++++++.++++++. ..+|..++.+++++++++|||+|++++|+++..++.+|+|+|+
T Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ak~~i 310 (884)
T TIGR01522 245 LGKQLSLVSFGVIGVICLVGWFQ--------------GKDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRA 310 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--------------cCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhhcCC
Confidence 99999888776665555543322 1357788999999999999999999999999999999999999
Q ss_pred EEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCC----------------------------HHHHHHHHHH
Q 001906 633 LIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD----------------------------RGEFLTLVAS 684 (997)
Q Consensus 633 lvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~----------------------------~~~~l~~~~~ 684 (997)
++|+++++|.||++|+||||||||||+|+|.|.+++..++.. ..+++..++.
T Consensus 311 lvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 390 (884)
T TIGR01522 311 IVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYTVAVSRILEAGNL 390 (884)
T ss_pred cccchHHHHhccCccEEEecCccccccCeEEEEEEEecCceEeeccCCccCCCCcccccccccccccCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999987643210 1234443332
Q ss_pred hhcc---------CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCCe-EEEEE--cCe--
Q 001906 685 AEAS---------SEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRG-IQCFI--SGK-- 750 (997)
Q Consensus 685 ~~~~---------s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-i~~~~--~g~-- 750 (997)
+... .+||+++|+++++++.+..... . ........+|++..++. +.... +|+
T Consensus 391 ~~~~~~~~~~~~~~g~p~e~All~~~~~~~~~~~~----~----------~~~~~~~~pF~s~~k~m~v~~~~~~~~~~~ 456 (884)
T TIGR01522 391 CNNAKFRNEADTLLGNPTDVALIELLMKFGLDDLR----E----------TYIRVAEVPFSSERKWMAVKCVHRQDRSEM 456 (884)
T ss_pred hCCCeecCCCCCcCCChHHHHHHHHHHHcCcHhHH----h----------hCcEEeEeCCCCCCCeEEEEEEEcCCCeEE
Confidence 2211 2469999999999876431000 0 00111222333333221 21111 222
Q ss_pred EEEEeeHhhhhh--------cCCC--CCh----hhHHHHHHHHHcCCeEEEEEECC-----eEEEEEEecCCCcHhHHHH
Q 001906 751 QVLVGNRKLLNE--------SGIT--IPD----HVESFVVELEESARTGILVAYDD-----NLIGVMGIADPVKREAAVV 811 (997)
Q Consensus 751 ~~~ig~~~~~~~--------~~~~--~~~----~~~~~~~~~~~~g~~~i~va~~~-----~~lG~i~~~d~~~~~~~~~ 811 (997)
.+..|+++.+.. .|.. +++ .+.+..+++.++|+|++++|++. +++|+++++|++||+++++
T Consensus 457 ~~~KGape~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~G~rvl~~A~~~~~~~l~~lGli~l~Dp~r~~~~~~ 536 (884)
T TIGR01522 457 CFMKGAYEQVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAEMASAGLRVIAFASGPEKGQLTFLGLVGINDPPRPGVKEA 536 (884)
T ss_pred EEEeCChHHHHHhhhhhhhcCCCeeeCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCCeEEEEEEeccCcchhHHHHH
Confidence 233455543332 2221 222 23445567889999999999965 8999999999999999999
Q ss_pred HHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc---------------------------eEEeccChhhHHHHHHHHhhc
Q 001906 812 VEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---------------------------DVMADVMPAGKADAVRSFQKD 864 (997)
Q Consensus 812 i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~---------------------------~~~~~~~p~~K~~~v~~l~~~ 864 (997)
|++|+++|++++|+|||+..+|.++|+++|+. .+|+|++|++|.++++.+|+.
T Consensus 537 i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~~iv~~lq~~ 616 (884)
T TIGR01522 537 VTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQKR 616 (884)
T ss_pred HHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999997 499999999999999999999
Q ss_pred CCEEEEEcCCcCCHHHHhcCCeeEEec-CCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 865 GSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIP 943 (997)
Q Consensus 865 g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~ 943 (997)
|+.|+|+|||.||+||+++|||||+|| ++++.++++||+++++++++.++.++++||++++++++|+.|+++.|+..+.
T Consensus 617 g~~v~mvGDGvND~pAl~~AdVGia~g~~g~~va~~aaDivl~dd~~~~i~~~i~~gR~~~~ni~k~i~~~l~~ni~~~~ 696 (884)
T TIGR01522 617 GDVVAMTGDGVNDAPALKLADIGVAMGQTGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIKNFITFQLSTSVAALS 696 (884)
T ss_pred CCEEEEECCCcccHHHHHhCCeeEecCCCcCHHHHHhcCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999999999999 6899999999999999999999999999999999999999999999998776
Q ss_pred HHh-hhhccccCCCccHHHHHHHhhhhhHHHhhhhhcccc
Q 001906 944 IAA-GVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRR 982 (997)
Q Consensus 944 la~-g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~ 982 (997)
+.+ +.++ +. ..|+.+.-+..+.-+...+.++.|..
T Consensus 697 ~~~~~~~~---~~-~~pl~~~qiL~inl~~d~~~a~~l~~ 732 (884)
T TIGR01522 697 LIALATLM---GF-PNPLNAMQILWINILMDGPPAQSLGV 732 (884)
T ss_pred HHHHHHHH---cC-CCchhHHHHHHHHHHHHhhHHHHhcc
Confidence 543 2222 22 23555555556666666666666653
No 17
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-78 Score=683.37 Aligned_cols=560 Identities=26% Similarity=0.367 Sum_probs=430.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEEecce
Q 001906 404 LITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTS 483 (997)
Q Consensus 404 l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~ 483 (997)
+.+.+++......++++++.++++.|+++.|+.++|+|++ +.+.+++++|+||||+.++-||+||||.++++-..
T Consensus 84 I~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~R~g-----k~~~i~A~eLVPGDiV~l~vGDkVPADlRl~e~~s 158 (972)
T KOG0202|consen 84 ITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVLRSG-----KLQHILARELVPGDIVELKVGDKIPADLRLIEAKS 158 (972)
T ss_pred eeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEEecC-----cccceehhccCCCCEEEEecCCccccceeEEeeee
Confidence 3333333333444455566689999999999999999754 57899999999999999999999999999999777
Q ss_pred e-eeccccCCCCcccccCC--------------CCceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHH
Q 001906 484 Y-VNESMVTGEAVPVLKEI--------------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQK 548 (997)
Q Consensus 484 ~-Vdes~LTGEs~pv~k~~--------------g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~ 548 (997)
+ ||||.|||||.|+.|.. .+.+|+||.+..|.++++|+.||.+|.+|++.+.+++.+.+|+|+|+
T Consensus 159 l~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~e~~kTPLqk 238 (972)
T KOG0202|consen 159 LRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQATESPKTPLQK 238 (972)
T ss_pred eeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhccCCCCCcHHH
Confidence 6 99999999999999943 25699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHH
Q 001906 549 FADFVASIFVPIVVTLALFTWLCWYVAGVLG--AYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGV 626 (997)
Q Consensus 549 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~ 626 (997)
.+|.+.+.+..++.++++.+++.- .+++. .....|+ ..+...|..++++.+.++|++|++.+.++++.+.++
T Consensus 239 ~ld~~G~qLs~~is~i~v~v~~~n--ig~f~~p~~~g~~f----k~~~~~f~IaVsLAVAAIPEGLPaVvT~tLALG~~r 312 (972)
T KOG0202|consen 239 KLDEFGKQLSKVISFICVGVWLLN--IGHFLDPVHGGSWF----KGALYYFKIAVSLAVAAIPEGLPAVVTTTLALGTRR 312 (972)
T ss_pred HHHHHHHHHHHHheehhhhHHHhh--hhhhccccccccch----hchhhhhhHHHHHHHHhccCCCcchhhhhHHHhHHH
Confidence 999999998866555555444331 22211 0112343 357788999999999999999999999999999999
Q ss_pred HHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCC--------------------------------C
Q 001906 627 GANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM--------------------------------D 674 (997)
Q Consensus 627 ~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~--------------------------------~ 674 (997)
|+|+++++|...++|+||.++.||.|||||||+|+|.+.+++..+.. +
T Consensus 313 MakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~~~~~~~~~~f~~tg~ty~~~g~v~~~~~~~~~~~~~ 392 (972)
T KOG0202|consen 313 MAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIPDGGTATVDEFNPTGTTYSPEGEVFKDGLYEKDKAGD 392 (972)
T ss_pred HHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEecccccccccccccCCceeCCCCceEecCccccccccc
Confidence 99999999999999999999999999999999999999998765321 1
Q ss_pred HHHHHHHH---H-----Hhhcc-------CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCccccc------cc
Q 001906 675 RGEFLTLV---A-----SAEAS-------SEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLD------VS 733 (997)
Q Consensus 675 ~~~~l~~~---~-----~~~~~-------s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 733 (997)
.+.+..++ + ..+++ .+.|.+.|+...+++.+..+.......... ....+.+..+ ..
T Consensus 393 ~~~l~~l~~i~~lCNda~v~~~~~~~~~~~G~pTE~AL~vlaeKm~l~~~~~~~~s~~~---~~~c~~~~~~~~~~~~el 469 (972)
T KOG0202|consen 393 NDLLQELAEICALCNDATVEYNDADCYEKVGEPTEGALIVLAEKMGLPGTRSTNLSNEE---ASACNRVYSRLFKKIAEL 469 (972)
T ss_pred cHHHHHHHHHHHhhhhhhhhcCchhhHHhcCCchHHHHHHHHHHcCCCcchhhcccccc---cccchhHHHHhhhheeEe
Confidence 11222222 1 11211 357999999999999987765421111100 0011111111 12
Q ss_pred ccccccCC-eEEEEE-cC----eEEEEeeHhhhhh--------cC---CCCC----hhhHHHHHHHHHcCCeEEEEEE--
Q 001906 734 DFSALPGR-GIQCFI-SG----KQVLVGNRKLLNE--------SG---ITIP----DHVESFVVELEESARTGILVAY-- 790 (997)
Q Consensus 734 ~~~~~~g~-gi~~~~-~g----~~~~ig~~~~~~~--------~~---~~~~----~~~~~~~~~~~~~g~~~i~va~-- 790 (997)
+|++..+. ++.+.- .| .-+..|..+-+.+ .| .++. +.+.+...++..+|.|++++|+
T Consensus 470 pFssdrK~Msv~c~~~~~~~~~~~fvKGA~E~Vl~rcs~~~~~~g~~~~pLt~~~re~il~~~~~~g~~gLRvLalA~~~ 549 (972)
T KOG0202|consen 470 PFSSDRKSMSVKCSPAHGQSGYKMFVKGAPESVLERCSTYYGSDGQTKVPLTQASRETILANVYEMGSEGLRVLALASKD 549 (972)
T ss_pred ecccccceEEEEEecCCCCccceEEecCChHHHHHhhhcEEccCCceeeeCcHHHHHHHHHHHHHHhhccceEEEEEccC
Confidence 33333222 111110 11 1233344433322 11 1122 2334455678899999999986
Q ss_pred ----------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-----
Q 001906 791 ----------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----- 843 (997)
Q Consensus 791 ----------------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~----- 843 (997)
|++|+|++++.||+|++++++|+.|+++||+|+|+|||+..||.+||+++|+.
T Consensus 550 ~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed 629 (972)
T KOG0202|consen 550 SPGQVPDDQDLNDTSNRATAESDLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDED 629 (972)
T ss_pred CcccChhhhhhcccccccccccceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCcc
Confidence 56899999999999999999999999999999999999999999999999985
Q ss_pred --------------------------eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEec-CCcHH
Q 001906 844 --------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDI 896 (997)
Q Consensus 844 --------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~ 896 (997)
.+|+|..|..|.++|+.||+.|+.|+|.|||.||+||||.||+||||| +|+++
T Consensus 630 ~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~GTdV 709 (972)
T KOG0202|consen 630 VSSMALTGSEFDDLSDEELDDAVRRVLVFARAEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGISGTDV 709 (972)
T ss_pred ccccccchhhhhcCCHHHHHHHhhcceEEEecCchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecCCccHh
Confidence 499999999999999999999999999999999999999999999999 99999
Q ss_pred HHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccccCCCccHHHHHHHhhhhhHHHhh
Q 001906 897 AIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIA-AGVFFPSLGIKLPPWAAGACMALSSVSVVC 975 (997)
Q Consensus 897 ~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la-~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~ 975 (997)
+|++||+||.+|||+.+..++++||.+|.||++++.|.++.|+..+.+- ++.. +|++ .|+.++-+....-+.--+
T Consensus 710 aKeAsDMVL~DDnFstIvaAVEEGr~IynNik~Fir~~lSsnVgev~~I~l~aa---~~~p-~pL~pvQiLWiNlvtDG~ 785 (972)
T KOG0202|consen 710 AKEASDMVLADDNFSTIVAAVEEGRAIYNNIKNFIRYLLSSNVGEVVLIFLTAA---FGIP-EPLIPVQILWINLVTDGP 785 (972)
T ss_pred hHhhhhcEEecCcHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hCCC-CcccchhhheeeeeccCC
Confidence 9999999999999999999999999999999999999999998755332 2221 2332 344444455555555555
Q ss_pred hhhccc
Q 001906 976 SSLLLR 981 (997)
Q Consensus 976 ~s~~l~ 981 (997)
-+-.|.
T Consensus 786 PA~aLG 791 (972)
T KOG0202|consen 786 PATALG 791 (972)
T ss_pred chhhcC
Confidence 555554
No 18
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=5.9e-75 Score=727.47 Aligned_cols=551 Identities=22% Similarity=0.301 Sum_probs=451.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccE
Q 001906 397 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADG 476 (997)
Q Consensus 397 ~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~ 476 (997)
+|..+++++++++++.++..+++.|+.+.++++.++.|.+++|+|+ | ++++|++++|+|||+|.+++||+|||||
T Consensus 103 ~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRd--g---~~~~I~~~~lv~GDiv~l~~Gd~IPaD~ 177 (997)
T TIGR01106 103 NLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRD--G---EKMSINAEQVVVGDLVEVKGGDRIPADL 177 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEC--C---EEEEeeHHHCCCCCEEEECCCCEEeeeE
Confidence 4444666777778888899999999999999999999999998864 4 6799999999999999999999999999
Q ss_pred EEEecc-eeeeccccCCCCcccccCCCC----------ceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCCh
Q 001906 477 IVVWGT-SYVNESMVTGEAVPVLKEINS----------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAP 545 (997)
Q Consensus 477 ~vl~G~-~~Vdes~LTGEs~pv~k~~g~----------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~ 545 (997)
++++|+ +.||||+|||||.|+.|.+++ .+|+||.+.+|.+.++|++||.+|.+|++.+++++.+.+++|
T Consensus 178 ~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~p 257 (997)
T TIGR01106 178 RIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASGLENGKTP 257 (997)
T ss_pred EEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhhcccCCCc
Confidence 999997 579999999999999998864 699999999999999999999999999999999988888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHH
Q 001906 546 IQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATG 625 (997)
Q Consensus 546 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~ 625 (997)
+|+..+++..++++++++++++.++++++.+ .+|..++.+++++++++|||+|++++++++..+..
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~ 323 (997)
T TIGR01106 258 IAIEIEHFIHIITGVAVFLGVSFFILSLILG--------------YTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAK 323 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 9999999999999998888887777665432 24677888999999999999999999999999999
Q ss_pred HHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCC--------------CC-----HHHHHHHHHHhh
Q 001906 626 VGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK--------------MD-----RGEFLTLVASAE 686 (997)
Q Consensus 626 ~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~--------------~~-----~~~~l~~~~~~~ 686 (997)
+|+++|+++|+++++|.||++++||||||||||+|+|+|.+++..+. .+ .++++.+++.+.
T Consensus 324 ~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~alcn 403 (997)
T TIGR01106 324 RMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLCN 403 (997)
T ss_pred HHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEECCeEEecCCccCCCCccCCcccHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999874321 01 013444444332
Q ss_pred c----------------cCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCCeEEEEEc--
Q 001906 687 A----------------SSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFIS-- 748 (997)
Q Consensus 687 ~----------------~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~-- 748 (997)
. ..++|.+.|+++++.+.+.... ............+|++..++.......
T Consensus 404 ~~~~~~~~~~~~~~~~~~~gdp~E~ALl~~a~~~~~~~~------------~~~~~~~~v~~~pF~s~rK~m~~v~~~~~ 471 (997)
T TIGR01106 404 RAVFKAGQENVPILKRAVAGDASESALLKCIELCLGSVM------------EMRERNPKVVEIPFNSTNKYQLSIHENED 471 (997)
T ss_pred CCeeccccCCCcccccccCcChHHHHHHHHHHHhCCCHH------------HHHhhCceeEEeccCCCCceEEEEEeccC
Confidence 1 1357999999999875421000 000011122334666666554433321
Q ss_pred --C-e--EEEEeeHhhhhhcC-------C--CCCh----hhHHHHHHHHHcCCeEEEEEE--------------------
Q 001906 749 --G-K--QVLVGNRKLLNESG-------I--TIPD----HVESFVVELEESARTGILVAY-------------------- 790 (997)
Q Consensus 749 --g-~--~~~ig~~~~~~~~~-------~--~~~~----~~~~~~~~~~~~g~~~i~va~-------------------- 790 (997)
+ + .+..|+++.+.+.. . ++++ .+.+..+++..+|+|++++|+
T Consensus 472 ~~~~~~~~~~KGApe~Il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~GlRvla~A~k~l~~~~~~~~~~~~~~~~~ 551 (997)
T TIGR01106 472 PRDPRHLLVMKGAPERILERCSSILIHGKEQPLDEELKEAFQNAYLELGGLGERVLGFCHLYLPDEQFPEGFQFDTDDVN 551 (997)
T ss_pred CCCceEEEEEeCChHHHHHHhhHHhcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEEeecCcccccccccccchhhh
Confidence 1 2 35678877665432 1 1222 244556778999999999885
Q ss_pred ----CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-----------------------
Q 001906 791 ----DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----------------------- 843 (997)
Q Consensus 791 ----~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~----------------------- 843 (997)
|++|+|+++++|++|++++++|++|+++|++++|+|||+..+|.++|+++|+.
T Consensus 552 ~~e~~L~flGli~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~ 631 (997)
T TIGR01106 552 FPTDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNP 631 (997)
T ss_pred ccccCcEEEEEEeccCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhcccccccccc
Confidence 33699999999999999999999999999999999999999999999999992
Q ss_pred ------------------------------eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEec-C
Q 001906 844 ------------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-A 892 (997)
Q Consensus 844 ------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~ 892 (997)
.+|+|++|+||.++|+.+|+.|+.|+|+|||.||+|||++|||||||| +
T Consensus 632 ~~~~~~vi~G~~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~~ 711 (997)
T TIGR01106 632 RDAKACVVHGSDLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIA 711 (997)
T ss_pred ccccceEEEhHHhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCCc
Confidence 199999999999999999999999999999999999999999999999 6
Q ss_pred CcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccccCCCccHHHHHHHhhhhhH
Q 001906 893 GTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAA-GVFFPSLGIKLPPWAAGACMALSSV 971 (997)
Q Consensus 893 ~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la~-g~~~~~~g~~l~p~~a~~~m~~ss~ 971 (997)
|++.++++||+++++|+|+.+++++++||+++.|+++++.|.++.|+..+.+.+ +.+ ++.+ .|+.+.-++.+.-+
T Consensus 712 G~~vak~aADivL~dd~f~~Iv~ai~~GR~i~~ni~k~i~~~l~~ni~~~~~~~~~~~---~~~~-~pl~~~qlL~inli 787 (997)
T TIGR01106 712 GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFII---ANIP-LPLGTITILCIDLG 787 (997)
T ss_pred ccHHHHHhhceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HcCc-chhHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999997765443 222 2332 35555555556666
Q ss_pred HHhhhhhcccc
Q 001906 972 SVVCSSLLLRR 982 (997)
Q Consensus 972 ~v~~~s~~l~~ 982 (997)
...+-++.|..
T Consensus 788 ~d~lp~~al~~ 798 (997)
T TIGR01106 788 TDMVPAISLAY 798 (997)
T ss_pred HHHHHHHHHhc
Confidence 66666666654
No 19
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-76 Score=728.89 Aligned_cols=547 Identities=27% Similarity=0.372 Sum_probs=447.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEEecce-e
Q 001906 406 TFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTS-Y 484 (997)
Q Consensus 406 ~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~-~ 484 (997)
+++++...+...++.|+.+.+++|+++.+..++|.|+ | ++++|++++|+|||+|.+++||+||||++++++++ .
T Consensus 111 ~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~R~--g---~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~l~ 185 (917)
T COG0474 111 LVVVINALLGFVQEYRAEKALEALKKMSSPKAKVLRD--G---KFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLE 185 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEeC--C---cEEEecHHHCCCCcEEEECCCCccccceEEEEecCce
Confidence 3333344444555556677888888888899999873 4 78999999999999999999999999999999998 7
Q ss_pred eeccccCCCCcccccCC--------------CCceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHH
Q 001906 485 VNESMVTGEAVPVLKEI--------------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 550 (997)
Q Consensus 485 Vdes~LTGEs~pv~k~~--------------g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~ 550 (997)
||||+|||||.|+.|.+ .+.+|+||.+.+|.+.+.|++||.+|..|++..++......++|+|+.+
T Consensus 186 VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~l~~~l 265 (917)
T COG0474 186 VDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTPLQRKL 265 (917)
T ss_pred EEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCCcHHHHH
Confidence 99999999999999952 4778999999999999999999999999999999999878899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhc
Q 001906 551 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANN 630 (997)
Q Consensus 551 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~ 630 (997)
+++..++..+.++++++.+++.++.+. ..|..++.+++++++.++|.+|++.+.++++.+..+|+++
T Consensus 266 ~~~~~~l~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~mak~ 332 (917)
T COG0474 266 NKLGKFLLVLALVLGALVFVVGLFRGG-------------NGLLESFLTALALAVAAVPEGLPAVVTIALALGAQRMAKD 332 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-------------ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998887744321 2278899999999999999999999999999999999999
Q ss_pred CcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcC-CCCHH-----------HHHHHHHH---hhcc------C
Q 001906 631 GVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFT-KMDRG-----------EFLTLVAS---AEAS------S 689 (997)
Q Consensus 631 gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~-~~~~~-----------~~l~~~~~---~~~~------s 689 (997)
++++|+++++|.||++++||+|||||||+|+|+|.+++..+ ..+.+ +++..++. .... .
T Consensus 333 ~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lc~~~~~~~~~~~~~ 412 (917)
T COG0474 333 NAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDIDDKDLKDSPALLRFLLAAALCNSVTPEKNGWYQA 412 (917)
T ss_pred cchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCCCcccccccccccchHHHHHHHHHHhcCcccccccCceec
Confidence 99999999999999999999999999999999999999884 22111 12221111 1222 5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCCeEEEEE--cCe--EEEEeeHhhhhhcC-
Q 001906 690 EHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFI--SGK--QVLVGNRKLLNESG- 764 (997)
Q Consensus 690 ~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~--~g~--~~~ig~~~~~~~~~- 764 (997)
.+|.+.|+++++++.++.. ..... .....+....+|++..++.-...- +|+ .++.|+++.+.+..
T Consensus 413 gdptE~Al~~~a~~~~~~~----~~~~~------~~~~~~~~~~PFdS~rKrMsviv~~~~~~~~~~~KGApe~il~~~~ 482 (917)
T COG0474 413 GDPTEGALVEFAEKLGFSL----DLSGL------EVEYPILAEIPFDSERKRMSVIVKTDEGKYILFVKGAPEVILERCK 482 (917)
T ss_pred CCccHHHHHHHHHhcCCcC----CHHHH------hhhcceeEEecCCCCceEEEEEEEcCCCcEEEEEcCChHHHHHHhc
Confidence 6999999999999876422 00000 001122444567766655432221 222 35668888775411
Q ss_pred -----CC----CChhhHHHHHHHHHcCCeEEEEEE-----------------CCeEEEEEEecCCCcHhHHHHHHHHHHC
Q 001906 765 -----IT----IPDHVESFVVELEESARTGILVAY-----------------DDNLIGVMGIADPVKREAAVVVEGLLKM 818 (997)
Q Consensus 765 -----~~----~~~~~~~~~~~~~~~g~~~i~va~-----------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~ 818 (997)
.+ .++.+.+..++++++|+|++++|| |..++|+++++|++|++++++|+.|+++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~la~~glRvla~A~k~~~~~~~~~~~~~~E~dl~~lGl~g~~Dppr~~v~~aI~~l~~A 562 (917)
T COG0474 483 SIGELEPLTEEGLRTLEEAVKELASEGLRVLAVAYKKLDRAEKDDEVDEIESDLVFLGLTGIEDPPREDVKEAIEELREA 562 (917)
T ss_pred ccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhhhhccceeehhhhccCCCCccHHHHHHHHHHC
Confidence 11 234566677889999999999887 3689999999999999999999999999
Q ss_pred CCeEEEEcCCCHHHHHHHHHHcCCc-----------------------------eEEeccChhhHHHHHHHHhhcCCEEE
Q 001906 819 GVRPVMVTGDNWRTAHAVAREIGIQ-----------------------------DVMADVMPAGKADAVRSFQKDGSIVA 869 (997)
Q Consensus 819 gi~~~i~Tgd~~~~a~~ia~~~gi~-----------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~ 869 (997)
||+++|+|||+..||.+||+++|+. .+|+|++|+||.++|+.+|+.|+.|+
T Consensus 563 GI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~qK~~IV~~lq~~g~vVa 642 (917)
T COG0474 563 GIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQKARIVEALQKSGHVVA 642 (917)
T ss_pred CCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999999999964 49999999999999999999999999
Q ss_pred EEcCCcCCHHHHhcCCeeEEec-CCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Q 001906 870 MVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIA-AG 947 (997)
Q Consensus 870 ~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la-~g 947 (997)
|+|||.||+||||+|||||+|| +|+|.++++||+++.++++..+..++++||+++.|+++.+.|.+.+|+..+.+. .+
T Consensus 643 mtGDGvNDapALk~ADVGIamg~~Gtdaak~Aadivl~dd~~~~i~~av~eGR~~~~ni~k~i~~~l~~n~~~~~~~~~~ 722 (917)
T COG0474 643 MTGDGVNDAPALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAVVEGRRVYVNIKKFILYLLSKNVGEVLTLLIY 722 (917)
T ss_pred EeCCCchhHHHHHhcCccEEecccHHHHHHhhcceEeecCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 699999999999999999999999999999999999999999999999855433 33
Q ss_pred hhccccCCCccHHHHHHHhhhhhHHHhhhhhccccC
Q 001906 948 VFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRY 983 (997)
Q Consensus 948 ~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~ 983 (997)
.++ +....|+.+.-++...-+...+.++.|...
T Consensus 723 ~~~---~~~~~p~~~~qll~inll~d~~pa~~L~~~ 755 (917)
T COG0474 723 SLF---NLFFLPLTPLQLLWINLLTDSLPALALGVE 755 (917)
T ss_pred HHH---hcccccHHHHHHHHHHHHHhhhhhheeecC
Confidence 322 222345666666666666666666666544
No 20
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=2.6e-74 Score=718.57 Aligned_cols=562 Identities=22% Similarity=0.299 Sum_probs=441.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEE
Q 001906 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVV 479 (997)
Q Consensus 400 ~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl 479 (997)
.++++++++++...+..+++.|+++.+++|+++.+.+++|+|+ | ++++|++++|+|||+|.+++||+|||||+|+
T Consensus 83 ~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~ViRd--g---~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi 157 (1053)
T TIGR01523 83 EGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIRN--G---KSDAIDSHDLVPGDICLLKTGDTIPADLRLI 157 (1053)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeC--C---eeeecCHhhCCCCCEEEECCCCEeeccEEEE
Confidence 4667777888888899999999999999999999999998864 4 7899999999999999999999999999999
Q ss_pred ecc-eeeeccccCCCCcccccCCC---------------CceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhc--
Q 001906 480 WGT-SYVNESMVTGEAVPVLKEIN---------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM-- 541 (997)
Q Consensus 480 ~G~-~~Vdes~LTGEs~pv~k~~g---------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~-- 541 (997)
+++ ..||||+|||||.||.|.+. +.+|+||.+.+|.++++|++||.+|.+|+|.+++.+...
T Consensus 158 ~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~~~~~~~~~~ 237 (1053)
T TIGR01523 158 ETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGLF 237 (1053)
T ss_pred EeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHHHHhhhhhcc
Confidence 986 56999999999999999642 468999999999999999999999999999998865431
Q ss_pred ---------------------------------cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCC
Q 001906 542 ---------------------------------SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPE 588 (997)
Q Consensus 542 ---------------------------------~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 588 (997)
.++|+|+.+++++.++..+.++++++.|+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~~~~------------- 304 (1053)
T TIGR01523 238 QRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKFD------------- 304 (1053)
T ss_pred ccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------
Confidence 2489999999999988887777777666532210
Q ss_pred CCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEE
Q 001906 589 NGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAK 668 (997)
Q Consensus 589 ~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~ 668 (997)
.+...+.++++++++++|.+|+..+.++++.+..+|+++++++|++.++|+||.+++||+|||||||+|+|.|.+++
T Consensus 305 ---~~~~~~~~av~l~Va~VPegLp~~vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i~ 381 (1053)
T TIGR01523 305 ---VDKEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIW 381 (1053)
T ss_pred ---hhHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEEE
Confidence 12356678899999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred EcC-----------CCC---------------------------------------------H---HHHHHHHHHhh---
Q 001906 669 VFT-----------KMD---------------------------------------------R---GEFLTLVASAE--- 686 (997)
Q Consensus 669 ~~~-----------~~~---------------------------------------------~---~~~l~~~~~~~--- 686 (997)
..+ ++. . .+++..++.+.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lcn~a~ 461 (1053)
T TIGR01523 382 IPRFGTISIDNSDDAFNPNEGNVSGIPRFSPYEYSHNEAADQDILKEFKDELKEIDLPEDIDMDLFIKLLETAALANIAT 461 (1053)
T ss_pred EcCCceEEecCCCCCCCCcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHhccCCe
Confidence 431 000 0 11232222211
Q ss_pred ----------ccCCCHHHHHHHHHHHhcCCCCCC-----CCCCC---C-----CCccccccCCcccccccccccccCCeE
Q 001906 687 ----------ASSEHPLAKAVVEYARHFHFFDDP-----SLNPD---G-----QSHSKESTGSGWLLDVSDFSALPGRGI 743 (997)
Q Consensus 687 ----------~~s~~p~~~ai~~~~~~~~~~~~~-----~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~g~gi 743 (997)
...++|.+.|++.++.+.+..... ..... . ....+............+|++..++..
T Consensus 462 ~~~~~~~~~~~~~GdptE~ALl~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pFds~rK~ms 541 (1053)
T TIGR01523 462 VFKDDATDCWKAHGDPTEIAIHVFAKKFDLPHNALTGEEDLLKSNENDQSSLSQHNEKPGSAQFEFIAEFPFDSEIKRMA 541 (1053)
T ss_pred eeccCCCCceeeCcCccHHHHHHHHHHcCCCcccccchhhhhhhccccccccccccccccccccceEEEeccCCCCCeEE
Confidence 012599999999999877642100 00000 0 000000001122334456777666554
Q ss_pred EEEEc--Ce---EEEEeeHhhhhhcCC-----------CCC----hhhHHHHHHHHHcCCeEEEEEE-------------
Q 001906 744 QCFIS--GK---QVLVGNRKLLNESGI-----------TIP----DHVESFVVELEESARTGILVAY------------- 790 (997)
Q Consensus 744 ~~~~~--g~---~~~ig~~~~~~~~~~-----------~~~----~~~~~~~~~~~~~g~~~i~va~------------- 790 (997)
....+ |. .+..|+++.+.+... +++ +.+.+..++++.+|+|++++||
T Consensus 542 vv~~~~~~~~~~~~~KGApe~il~~c~~~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~GlRvLa~A~r~l~~~~~~~~~~ 621 (1053)
T TIGR01523 542 SIYEDNHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIANMESLAAEGLRVLAFASKSFDKADNNDDQL 621 (1053)
T ss_pred EEEEeCCCCEEEEEEeCChHHHHHhhhHhhcCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEEEEEECCchhccchhh
Confidence 44332 22 245688877655221 122 2244556788999999999986
Q ss_pred ------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc---------------
Q 001906 791 ------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--------------- 843 (997)
Q Consensus 791 ------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~--------------- 843 (997)
|+.++|+++++|++|++++++|++||++||+++|+|||+..+|.++|+++||.
T Consensus 622 ~~~~~~~~~~e~~L~~~G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~ 701 (1053)
T TIGR01523 622 KNETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSM 701 (1053)
T ss_pred hccccchhhhccCCEEEEEEeeecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccce
Confidence 34799999999999999999999999999999999999999999999999994
Q ss_pred ----------------------eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEec-CCcHHHHHh
Q 001906 844 ----------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEA 900 (997)
Q Consensus 844 ----------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ 900 (997)
.+|+|++|+||.++|+.+|+.|+.|+|+|||.||+|||++|||||||| +|++.++++
T Consensus 702 vitG~~l~~l~~~~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt~vak~a 781 (1053)
T TIGR01523 702 VMTGSQFDALSDEEVDDLKALCLVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGINGSDVAKDA 781 (1053)
T ss_pred eeehHHhhhcCHHHHHHHhhcCeEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCccHHHHHh
Confidence 289999999999999999999999999999999999999999999999 899999999
Q ss_pred cCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhc-cccCCCccHHHHHHHhhhhhHHHhhhhh
Q 001906 901 ADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAA-GVFF-PSLGIKLPPWAAGACMALSSVSVVCSSL 978 (997)
Q Consensus 901 ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la~-g~~~-~~~g~~l~p~~a~~~m~~ss~~v~~~s~ 978 (997)
||+++++++|..+..++++||++++++++.+.|.++.|+..+.+.+ +.++ .+.|...-|+.+..+..+.-+.-.+-++
T Consensus 782 ADivl~dd~f~~I~~~i~~gR~~~~ni~k~i~y~l~~ni~~i~~~~~~~~~~~~~g~~~~Pl~~~qiL~inli~d~~pal 861 (1053)
T TIGR01523 782 SDIVLSDDNFASILNAIEEGRRMFDNIMKFVLHLLAENVAEAILLIIGLAFRDENGKSVFPLSPVEILWCIMITSCFPAM 861 (1053)
T ss_pred cCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997665433 3322 1123322344444445555555556666
Q ss_pred cccc
Q 001906 979 LLRR 982 (997)
Q Consensus 979 ~l~~ 982 (997)
.|..
T Consensus 862 aL~~ 865 (1053)
T TIGR01523 862 GLGL 865 (1053)
T ss_pred hhcc
Confidence 6543
No 21
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=100.00 E-value=2.2e-75 Score=688.63 Aligned_cols=476 Identities=36% Similarity=0.545 Sum_probs=431.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHh--cCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEEecc
Q 001906 405 ITFVLFGKYLEILAKGKTSDAIKKLVE--LAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGT 482 (997)
Q Consensus 405 ~~~~~~~~~le~~~~~k~~~~l~~l~~--~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~ 482 (997)
+++++++.+++.+.++++.+.++++.+ ..|..+++++ + | +++|++++|+|||+|.+++||+|||||+|++|+
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r-~-g----~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g~ 76 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLR-N-G----WKEIPASDLVPGDIVLVKSGEIVPADGVLLSGS 76 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEE-C-C----eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEcc
Confidence 356678899999999999999999998 8889999885 3 4 578999999999999999999999999999999
Q ss_pred eeeeccccCCCCcccccCCCCceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHH-HHHHHHH
Q 001906 483 SYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA-SIFVPIV 561 (997)
Q Consensus 483 ~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 561 (997)
+.||||+|||||.|+.|.+|+.+++|+.+.+|+++++|+++|.+|..+++..++.+.+..++++++..+++. .++++++
T Consensus 77 ~~vdes~LTGEs~pv~k~~g~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~ 156 (499)
T TIGR01494 77 CFVDESNLTGESVPVLKTAGDAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILFV 156 (499)
T ss_pred EEEEcccccCCCCCeeeccCCccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998888999999999999 8999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHH
Q 001906 562 VTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALE 641 (997)
Q Consensus 562 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~le 641 (997)
++++++++++|++.... ..+|..++.+++++++++|||+|++++|+++..+..+++++||++|+++.+|
T Consensus 157 ~~la~~~~~~~~~~~~~-----------~~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~gilvk~~~~lE 225 (499)
T TIGR01494 157 LLIALAVFLFWAIGLWD-----------PNSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKKGIVVRSLNALE 225 (499)
T ss_pred HHHHHHHHHHHHHHHcc-----------cccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHCCcEEechhhhh
Confidence 99999988887654210 0147789999999999999999999999999999999999999999999999
Q ss_pred hhcCCcEEEecCCCccccCceEEEEEEEcCCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 001906 642 RAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSK 721 (997)
Q Consensus 642 ~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~ 721 (997)
.||++|++|||||||||+|+|++.++.+.+. +..++||+++|+++++++..
T Consensus 226 ~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~-------------~~~s~hp~~~ai~~~~~~~~---------------- 276 (499)
T TIGR01494 226 ELGKVDYICSDKTGTLTKNEMSFKKVSVLGG-------------EYLSGHPDERALVKSAKWKI---------------- 276 (499)
T ss_pred hccCCcEEEeeCCCccccCceEEEEEEecCC-------------CcCCCChHHHHHHHHhhhcC----------------
Confidence 9999999999999999999999999987543 46789999999999987531
Q ss_pred cccCCcccccccccccccCCeEEEEEcC--eEEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEE
Q 001906 722 ESTGSGWLLDVSDFSALPGRGIQCFISG--KQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMG 799 (997)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~g~gi~~~~~g--~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~ 799 (997)
....+|++.+ +|+.+.+++ ..+.+|+++++.+... .+++..+++.++|.++++++++++++|++.
T Consensus 277 --------~~~~~f~~~~-~~~~~~~~~~~~~~~~G~~~~i~~~~~----~~~~~~~~~~~~g~~~~~~a~~~~~~g~i~ 343 (499)
T TIGR01494 277 --------LNVFEFSSVR-KRMSVIVRGPDGTYVKGAPEFVLSRVK----DLEEKVKELAQSGLRVLAVASKETLLGLLG 343 (499)
T ss_pred --------cceeccCCCC-ceEEEEEecCCcEEEeCCHHHHHHhhH----HHHHHHHHHHhCCCEEEEEEECCeEEEEEE
Confidence 1234566666 677777765 5789999999876532 133344567789999999999999999999
Q ss_pred ecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHH
Q 001906 800 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSP 879 (997)
Q Consensus 800 ~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~ 879 (997)
++|++|++++++|+.|+++|++++|+|||+..++..+|+++|+ +++++|++|.++++.+|+.|+.|+|+|||.||++
T Consensus 344 l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi---~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~ 420 (499)
T TIGR01494 344 LEDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI---FARVTPEEKAALVEALQKKGRVVAMTGDGVNDAP 420 (499)
T ss_pred ecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc---eeccCHHHHHHHHHHHHHCCCEEEEECCChhhHH
Confidence 9999999999999999999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred HHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001906 880 ALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAG 947 (997)
Q Consensus 880 al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la~g 947 (997)
|+++|||||+|+ ++++||++++++++..++.++.+||++++++++|+.|++.||++.+|++++
T Consensus 421 al~~Advgia~~-----a~~~adivl~~~~l~~i~~~~~~~r~~~~~i~~~~~~~~~~n~~~~~~a~~ 483 (499)
T TIGR01494 421 ALKKADVGIAMG-----AKAAADIVLLDDNLSTIVDALKEGRKTFSTIKSNIFWAIAYNLILIPLAAL 483 (499)
T ss_pred HHHhCCCccccc-----hHHhCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 688999999999999999999999999999999999999999999999984
No 22
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-76 Score=666.54 Aligned_cols=607 Identities=25% Similarity=0.355 Sum_probs=478.3
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHH--HHHHHHHHHhhhHHHH
Q 001906 348 KRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVL--FGKYLEILAKGKTSDA 425 (997)
Q Consensus 348 ~~~~~~~~~~l~~~~~~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~le~~~~~k~~~~ 425 (997)
..|++-.|++++.. +|+.|.+ +| ++++.+++..++..++|++.+++++.+++ +-..+++|.+.++-+.
T Consensus 143 K~Fl~fvweA~qD~-----TLiIL~v-aA----vvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~ 212 (1034)
T KOG0204|consen 143 KGFLRFVWEALQDV-----TLIILMV-AA----VVSLGLGIYTPGIEDGWIEGVAILLSVILVVLVTAVNDYRQELQFRK 212 (1034)
T ss_pred ccHHHHHHHHhccc-----hHHHHHH-HH----HHHHhhhhccCCCCcccccchhheeeEEEEEEEeecchhHHhhhhhh
Confidence 45666778888765 3333322 11 22334444555666789998888776543 3344555655555555
Q ss_pred HHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEEeccee-eeccccCCCCcccccCC--C
Q 001906 426 IKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLKEI--N 502 (997)
Q Consensus 426 l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~~-Vdes~LTGEs~pv~k~~--g 502 (997)
|++.. ...+..|+|+ | +.++|++.||++|||+.++.||.+||||++++|+.+ +|||++||||.++.|.. +
T Consensus 213 L~~~k--~~~k~~ViR~--G---~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~d 285 (1034)
T KOG0204|consen 213 LQKEK--RNIKFQVIRG--G---RRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDKD 285 (1034)
T ss_pred hhhhh--hceEEEEEEC--C---EEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCcceeccCCCC
Confidence 55332 2345556643 5 779999999999999999999999999999999765 99999999999999976 5
Q ss_pred CceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 001906 503 SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYP 582 (997)
Q Consensus 503 ~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~ 582 (997)
.++++||.+.+|.+++.|+.+|-+|..|++..++.....+++|+|-++++++.....+.+.+|++++++....+..+.+.
T Consensus 286 PfLlSGTkv~eGsgkMlVTaVGmnt~wG~~m~~l~~~~~e~tpLQ~kL~~lA~~Igk~Gl~~A~~~~~VL~~r~~~~~~~ 365 (1034)
T KOG0204|consen 286 PFLLSGTKVMEGSGKMLVTAVGMNTQWGIIMTLLGAGGEEETPLQVKLNGLATQIGKIGLLFAALTFIVLVIRFFIGKTK 365 (1034)
T ss_pred CeEeecceeecCcceEEEEEeeecchHhhHHHhhhcCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeee
Confidence 67999999999999999999999999999999999988899999999999999998888888888887755433322221
Q ss_pred ------CCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCc
Q 001906 583 ------EQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGT 656 (997)
Q Consensus 583 ------~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGT 656 (997)
..|.+.....+...|..++.++++++|++||+|+.+++++++++|.+.+.++|..+++|++|..++||.|||||
T Consensus 366 ~~~~~~~~~~~~~~~~~v~~f~i~VTilVVAVPEGLPLAVTLsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKTGT 445 (1034)
T KOG0204|consen 366 IEGGTGTTWSDEYIQEFVKFFIIAVTILVVAVPEGLPLAVTLSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDKTGT 445 (1034)
T ss_pred cCCCCCccccHHHHHHHHHHhhheeEEEEEECCCCccHHHHHHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecCcCc
Confidence 23444445678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceEEEEEEEcCCCCH----------HHHHHHH-HHh-----------------hccCCCHHHHHHHHHHHhcCCCC
Q 001906 657 LTQGRATVTTAKVFTKMDR----------GEFLTLV-ASA-----------------EASSEHPLAKAVVEYARHFHFFD 708 (997)
Q Consensus 657 LT~~~~~v~~~~~~~~~~~----------~~~l~~~-~~~-----------------~~~s~~p~~~ai~~~~~~~~~~~ 708 (997)
||.|+|.|.+.+..++... ..+..+. ..+ ....++|.++|++.+..+.|.-
T Consensus 446 LT~N~MtVV~~~~~~~~~k~~~~~~~~l~~~~~~ll~~gI~~Nt~g~v~~~~~~g~~~~~~GspTE~AlL~f~~~LG~~- 524 (1034)
T KOG0204|consen 446 LTTNRMTVVQSYIGSEHYKVNSPKSSNLPPSLLDLLLQGIAQNTTGSVVKPEKGGEQPEQLGSPTECALLGFGLKLGMD- 524 (1034)
T ss_pred eEeeeEEEEeeeeccccccccCcccccCCHHHHHHHHHHHhhcCCCeEEecCCCCcCccccCCHHHHHHHHHHHHhCcc-
Confidence 9999999999776533211 1222221 121 1235689999999999887631
Q ss_pred CCCCCCCCCCccccccCCcccccccccccccCCe-EE---------EEEcCe-EEEEeeHhhhhh-cCCC--C----Chh
Q 001906 709 DPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRG-IQ---------CFISGK-QVLVGNRKLLNE-SGIT--I----PDH 770 (997)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-i~---------~~~~g~-~~~ig~~~~~~~-~~~~--~----~~~ 770 (997)
. ...+ ....+.++..|++..+++ +. +++||. ++++.+++.+.. .|.. + ...
T Consensus 525 ~--------~~~R---~e~~v~kv~~FNS~kK~~gvvi~~~~~~~y~~~KGAsEiVL~~C~~~~~~~g~~~~~~e~~~~~ 593 (1034)
T KOG0204|consen 525 F--------QDVR---PEEKVVKVYPFNSVKKRMGVVIKLPDGGHYVHWKGASEIVLKSCEYYIDSNGELVPFNEDDRKS 593 (1034)
T ss_pred h--------Hhhc---chhheeEEeccCcccceeeEEEEcCCCCeEEEEcChHHHHHHhhhheECCCCCEeeCCHHHHHH
Confidence 0 0000 123345666777665442 22 444443 222222222211 2211 1 123
Q ss_pred hHHHHHHHHHcCCeEEEEEE---------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCC
Q 001906 771 VESFVVELEESARTGILVAY---------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDN 829 (997)
Q Consensus 771 ~~~~~~~~~~~g~~~i~va~---------------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~ 829 (997)
+++.++.++.+|.|++++|| +.+++|+++++||+||+++++|+.++++|+.+.|+||||
T Consensus 594 ~~~~Ie~mA~~~LRti~lAy~df~~~~~~~~~~~~~~~~~~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTGDN 673 (1034)
T KOG0204|consen 594 FKDVIEPMASEGLRTICLAYRDFVAGPDEEPSWDNEELPEGGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTGDN 673 (1034)
T ss_pred HHHHHHHHHHhhhheeeEEeeccccCCCCCCCccccccCCCCeEEEEEeeccCCCCCCcHHHHHHHHHcCcEEEEEeCCc
Confidence 56678889999999999998 237899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCc-----------------------------eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHH
Q 001906 830 WRTAHAVAREIGIQ-----------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPA 880 (997)
Q Consensus 830 ~~~a~~ia~~~gi~-----------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~a 880 (997)
-.||++||.+|||. .+++|.+|.||.-+|+.|++.|+.|+..|||.||+||
T Consensus 674 I~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~DK~lLVk~L~~~g~VVAVTGDGTNDaPA 753 (1034)
T KOG0204|consen 674 INTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPNDKHLLVKGLIKQGEVVAVTGDGTNDAPA 753 (1034)
T ss_pred HHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCchHHHHHHHHHhcCcEEEEecCCCCCchh
Confidence 99999999999995 4999999999999999999999999999999999999
Q ss_pred HhcCCeeEEec-CCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccccCCCcc
Q 001906 881 LAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAA-GVFFPSLGIKLP 958 (997)
Q Consensus 881 l~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la~-g~~~~~~g~~l~ 958 (997)
|+.||||.||| .|++.|||+||+++++|||+.++.++.|||..|.+|+++++|++..|++++.+++ +... .| =.
T Consensus 754 LkeADVGlAMGIaGTeVAKEaSDIIi~DDNFssIVk~v~WGR~VY~nIqKFiQFQLTVNVvAliv~fv~A~~--~~--ds 829 (1034)
T KOG0204|consen 754 LKEADVGLAMGIAGTEVAKEASDIIILDDNFSSIVKAVKWGRNVYDNIQKFLQFQLTVNVVALIVNFVSACA--TG--DS 829 (1034)
T ss_pred hhhcccchhccccchhhhhhhCCeEEEcCchHHHHHHHHhhhHHHHHHHHhheeEEEEEEEeehhhhhhhhh--cC--Cc
Confidence 99999999999 8999999999999999999999999999999999999999999999999887775 2211 12 47
Q ss_pred HHHHHHHhhhhhHHHhhhhhccccCCCCCc
Q 001906 959 PWAAGACMALSSVSVVCSSLLLRRYKKPRL 988 (997)
Q Consensus 959 p~~a~~~m~~ss~~v~~~s~~l~~~~~~~~ 988 (997)
|+-|.-+....-|.-.+-||.|.- +||..
T Consensus 830 PLtAVQlLWVNLIMDTLgALALAT-epPt~ 858 (1034)
T KOG0204|consen 830 PLTAVQLLWVNLIMDTLGALALAT-EPPTD 858 (1034)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcc-CCCCh
Confidence 999999999999999999999974 45543
No 23
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=6.7e-74 Score=713.61 Aligned_cols=573 Identities=23% Similarity=0.299 Sum_probs=449.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCccccc
Q 001906 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 475 (997)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD 475 (997)
.|++ ++++++++++...+..++++|+.+.+++|.++.|.+++|+|+ | ++++|++++|+|||+|.+++||+||||
T Consensus 35 ~~~~-~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViRd--g---~~~~I~~~~Lv~GDiv~l~~Gd~IPaD 108 (917)
T TIGR01116 35 AFVE-PFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLRD--G---RWSVIKAKDLVPGDIVELAVGDKVPAD 108 (917)
T ss_pred cHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEC--C---EEEEEEHHHCCCCCEEEECCCCEeecc
Confidence 4444 566667777788888888889999999999999999998864 4 688999999999999999999999999
Q ss_pred EEEEecc-eeeeccccCCCCcccccCCC-------------CceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhc
Q 001906 476 GIVVWGT-SYVNESMVTGEAVPVLKEIN-------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM 541 (997)
Q Consensus 476 ~~vl~G~-~~Vdes~LTGEs~pv~k~~g-------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~ 541 (997)
|++++|+ +.||||+|||||.|+.|.++ +.+|+||.+.+|.++++|++||.+|.+|++.+.++..+.
T Consensus 109 ~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~~~ 188 (917)
T TIGR01116 109 IRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAAEQ 188 (917)
T ss_pred EEEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhccCC
Confidence 9999996 68999999999999999875 789999999999999999999999999999999999888
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHH
Q 001906 542 SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVM 621 (997)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~ 621 (997)
+++|+|+.+++++.++++++++++++.|+++........+...|. ..+...+..++++++++|||+|+++++++++
T Consensus 189 ~~t~lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~l~v~~iP~~Lp~~vti~l~ 264 (917)
T TIGR01116 189 EDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWI----QGAIYYFKIAVALAVAAIPEGLPAVITTCLA 264 (917)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH----HHHHHHHHHHHhhhhhccccccHHHHHHHHH
Confidence 999999999999999998888887777665533211000111121 2345566778899999999999999999999
Q ss_pred HHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCC--------------C-------------
Q 001906 622 VATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM--------------D------------- 674 (997)
Q Consensus 622 ~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~--------------~------------- 674 (997)
.+..+|+++|+++|+++++|+||++|+||||||||||+|+|+|.+++..++. +
T Consensus 265 ~~~~~m~~~~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (917)
T TIGR01116 265 LGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVALDPSSSSLNEFCVTGTTYAPEGGVIKDDGPVA 344 (917)
T ss_pred HHHHHHHHCCcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEecCCcccccceEEecCCccCCCccccccCCccc
Confidence 9999999999999999999999999999999999999999999998764310 0
Q ss_pred ------HHHHHHHHHHhhc-------------cCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCc-cc---cccCCccccc
Q 001906 675 ------RGEFLTLVASAEA-------------SSEHPLAKAVVEYARHFHFFDDPSLNPDGQSH-SK---ESTGSGWLLD 731 (997)
Q Consensus 675 ------~~~~l~~~~~~~~-------------~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~ 731 (997)
.++++..++.+.. ..++|.+.|+++++++.+.............. .. ..........
T Consensus 345 ~~~~~~~~~l~~~~~lc~~~~~~~~~~~~~~~~~gdp~E~ALl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (917)
T TIGR01116 345 GGQDAGLEELATIAALCNDSSLDFNERKGVYEKVGEATEAALKVLVEKMGLPATKNGVSSKRRPALGCNSVWNDKFKKLA 424 (917)
T ss_pred ccchHHHHHHHHHHHhcCCCeeeccccCCceeeccChhHHHHHHHHHHcCCCchhcccccccccccchhHHHHhhcceee
Confidence 0122222222111 13589999999999877642211100000000 00 0000112233
Q ss_pred ccccccccCCeEEE-EEcCe--EEEEeeHhhhhhcC--------C--CCCh----hhHHHHHHHHH-cCCeEEEEEE---
Q 001906 732 VSDFSALPGRGIQC-FISGK--QVLVGNRKLLNESG--------I--TIPD----HVESFVVELEE-SARTGILVAY--- 790 (997)
Q Consensus 732 ~~~~~~~~g~gi~~-~~~g~--~~~ig~~~~~~~~~--------~--~~~~----~~~~~~~~~~~-~g~~~i~va~--- 790 (997)
..+|++..++.-.. ..+++ .+..|+++.+.+.. . ++++ .+.+..+++++ +|+|++++||
T Consensus 425 ~~pF~s~rK~msviv~~~~~~~~~~KGApe~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~~GlRvl~~A~k~~ 504 (917)
T TIGR01116 425 TLEFSRDRKSMSVLCKPSTGNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTILSVIKEMGTTKALRCLALAFKDI 504 (917)
T ss_pred ecccChhhCeEEEEEeeCCcEEEEEcCChHHHHHhccceecCCCCeeeCCHHHHHHHHHHHHHHHhhcCCeEEEEEEEEC
Confidence 45666555443222 11222 45568887765532 1 1222 23445677888 9999999986
Q ss_pred --------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-------
Q 001906 791 --------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ------- 843 (997)
Q Consensus 791 --------------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~------- 843 (997)
|.+|+|+++++|++|++++++|++||++|++++|+|||+..+|.++|+++|+.
T Consensus 505 ~~~~~~~~~~~~~~~~~~e~~l~~lGl~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~ 584 (917)
T TIGR01116 505 PDPREEDLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVT 584 (917)
T ss_pred CccccccccccchhhhhhcCCcEEEEEeeeeCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCcccc
Confidence 23789999999999999999999999999999999999999999999999995
Q ss_pred ------------------------eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHH
Q 001906 844 ------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIE 899 (997)
Q Consensus 844 ------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~ 899 (997)
.+|+|++|++|.++++.+|+.|+.|+|+|||.||++||++|||||+||+|++.+++
T Consensus 585 ~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g~g~~~ak~ 664 (917)
T TIGR01116 585 FKSFTGREFDEMGPAKQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMGSGTEVAKE 664 (917)
T ss_pred ceeeeHHHHhhCCHHHHHHhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECCCCcHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999
Q ss_pred hcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccccCCCccHHHHHHHhhhhhHHHhhhhh
Q 001906 900 AADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAA-GVFFPSLGIKLPPWAAGACMALSSVSVVCSSL 978 (997)
Q Consensus 900 ~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la~-g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~ 978 (997)
+||+++.++++..+.+++++||++++++++++.|.+..|+..+.+.+ +.+ ++.+ .|+.+.-+..++.+...+.++
T Consensus 665 aAD~vl~dd~f~~i~~~i~~GR~~~~ni~k~i~~~l~~ni~~~~~~~~~~~---~~~~-~pl~~~qll~inli~d~lp~~ 740 (917)
T TIGR01116 665 ASDMVLADDNFATIVAAVEEGRAIYNNMKQFIRYMISSNIGEVVCIFLTAA---LGIP-EGLIPVQLLWVNLVTDGLPAT 740 (917)
T ss_pred hcCeEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HcCC-chHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997655443 222 2321 344444455555555666666
Q ss_pred cccc
Q 001906 979 LLRR 982 (997)
Q Consensus 979 ~l~~ 982 (997)
.|..
T Consensus 741 ~l~~ 744 (917)
T TIGR01116 741 ALGF 744 (917)
T ss_pred HHhc
Confidence 6543
No 24
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=7.8e-73 Score=713.14 Aligned_cols=560 Identities=22% Similarity=0.271 Sum_probs=439.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEec--CCCccc
Q 001906 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVL--PGTKLP 473 (997)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~--~G~~iP 473 (997)
.||..++.++++++++..+..++++|+.+.++++.. .+..++|+|+ | ++++|++++|+|||+|.|+ +|++||
T Consensus 191 ~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~Rd--g---~~~~I~s~eLvpGDiv~l~~~~g~~iP 264 (1054)
T TIGR01657 191 EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVIRN--G---KWVTIASDELVPGDIVSIPRPEEKTMP 264 (1054)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEEEC--C---EEEEEEcccCCCCCEEEEecCCCCEec
Confidence 566667888888888999999999999999998765 4667888764 4 7899999999999999999 999999
Q ss_pred ccEEEEecceeeeccccCCCCcccccCCC------------------CceecceEEee-------eeEEEEEEEecCchH
Q 001906 474 ADGIVVWGTSYVNESMVTGEAVPVLKEIN------------------SPVIGGTINLH-------GVLHIQATKVGSDAV 528 (997)
Q Consensus 474 aD~~vl~G~~~Vdes~LTGEs~pv~k~~g------------------~~v~aGt~~~~-------g~~~~~v~~~g~~t~ 528 (997)
|||+|++|++.||||+|||||.|+.|.+. +.+|+||.+.+ |.+.++|++||.+|.
T Consensus 265 aD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T~ 344 (1054)
T TIGR01657 265 CDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFSTS 344 (1054)
T ss_pred ceEEEEeCcEEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCcccc
Confidence 99999999999999999999999999752 24999999985 789999999999999
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhc
Q 001906 529 LSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIAC 608 (997)
Q Consensus 529 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~ 608 (997)
.|++.+.+...+..++++++...++..++ ++++++.++++++.+... +.++...+.++++++++++
T Consensus 345 ~G~i~~~i~~~~~~~~~~~~~~~~~~~~l----~~~a~i~~i~~~~~~~~~----------~~~~~~~~l~~l~iiv~~v 410 (1054)
T TIGR01657 345 KGQLVRSILYPKPRVFKFYKDSFKFILFL----AVLALIGFIYTIIELIKD----------GRPLGKIILRSLDIITIVV 410 (1054)
T ss_pred chHHHHHhhCCCCCCCchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHHHhhc
Confidence 99999999887777788877766555443 333333333332222111 2357888999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCC-------------H
Q 001906 609 PCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD-------------R 675 (997)
Q Consensus 609 P~al~la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~-------------~ 675 (997)
|++|++++++++..++.+|+|+||+||++.++|.+|++|++|||||||||+|+|.|.+++..+... .
T Consensus 411 P~~LP~~~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~~~~~~~~~~~~~~~~~~ 490 (1054)
T TIGR01657 411 PPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLSGNQEFLKIVTEDSSLKP 490 (1054)
T ss_pred CchHHHHHHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEecccCccccccccccccccCc
Confidence 999999999999999999999999999999999999999999999999999999999998654211 1
Q ss_pred HHHHHHHHHhh-------ccCCCHHHHHHHHHHHhcCCCCCCC-CCCCCCC--ccccccCCcccccccccccccCCeEEE
Q 001906 676 GEFLTLVASAE-------ASSEHPLAKAVVEYARHFHFFDDPS-LNPDGQS--HSKESTGSGWLLDVSDFSALPGRGIQC 745 (997)
Q Consensus 676 ~~~l~~~~~~~-------~~s~~p~~~ai~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~gi~~ 745 (997)
..++...+.+. ...++|++.|+++++.+....+... ....... ..........+....+|++..++.-..
T Consensus 491 ~~~~~~~a~C~~~~~~~~~~~Gdp~E~al~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~il~~~pF~S~~krMsvv 570 (1054)
T TIGR01657 491 SITHKALATCHSLTKLEGKLVGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQELSIIRRFQFSSALQRMSVI 570 (1054)
T ss_pred hHHHHHHHhCCeeEEECCEEecCHHHHHHHHhCCCEEECCCCcccccccccceeccCCCceEEEEEEEeecCCCCEEEEE
Confidence 11222222221 1247999999999864321110000 0000000 000000122334556777777654333
Q ss_pred -EEc--Ce--EEEEeeHhhhhhcCC--CCChhhHHHHHHHHHcCCeEEEEEE---------------------CCeEEEE
Q 001906 746 -FIS--GK--QVLVGNRKLLNESGI--TIPDHVESFVVELEESARTGILVAY---------------------DDNLIGV 797 (997)
Q Consensus 746 -~~~--g~--~~~ig~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~i~va~---------------------~~~~lG~ 797 (997)
... ++ .+..|+++.+.+... ..|+++.+..+++..+|+|++++|| |+.|+|+
T Consensus 571 v~~~~~~~~~~~~KGApE~Il~~c~~~~~p~~~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~~~~~r~~~E~~L~flGl 650 (1054)
T TIGR01657 571 VSTNDERSPDAFVKGAPETIQSLCSPETVPSDYQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFLGF 650 (1054)
T ss_pred EEEcCCCeEEEEEECCHHHHHHHcCCcCCChhHHHHHHHHHhcCCEEEEEEEeecCccchhhhhhccHHHHhcCceEEEE
Confidence 332 23 567899999887544 5788899999999999999999997 3579999
Q ss_pred EEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----------------------------------
Q 001906 798 MGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---------------------------------- 843 (997)
Q Consensus 798 i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~---------------------------------- 843 (997)
++|+|++||+++++|++||++|++++|+|||+..||.++|+++||.
T Consensus 651 i~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1054)
T TIGR01657 651 IVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPFAS 730 (1054)
T ss_pred EEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCceEEEeecccccCCCCceEEEEecCcccccc
Confidence 9999999999999999999999999999999999999999999992
Q ss_pred -------------------------------------------------eEEeccChhhHHHHHHHHhhcCCEEEEEcCC
Q 001906 844 -------------------------------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDG 874 (997)
Q Consensus 844 -------------------------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg 874 (997)
.+|+|++|+||.++|+.+|+.|+.|+|+|||
T Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~g~~V~m~GDG 810 (1054)
T TIGR01657 731 TQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKLDYTVGMCGDG 810 (1054)
T ss_pred ccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3889999999999999999999999999999
Q ss_pred cCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 001906 875 INDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLG 954 (997)
Q Consensus 875 ~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la~g~~~~~~g 954 (997)
.||++|||+||||||||++ | +..+||+++.+++++.++.+|++||+++.++++.+.|.+.|+++...... .++ +.|
T Consensus 811 ~ND~~ALK~AdVGIam~~~-d-as~AA~f~l~~~~~~~I~~~I~eGR~~l~~~~~~~~~~~~~~~~~~~~~~-~l~-~~~ 886 (1054)
T TIGR01657 811 ANDCGALKQADVGISLSEA-E-ASVAAPFTSKLASISCVPNVIREGRCALVTSFQMFKYMALYSLIQFYSVS-ILY-LIG 886 (1054)
T ss_pred hHHHHHHHhcCcceeeccc-c-ceeecccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-Hcc
Confidence 9999999999999999864 3 44789999999999999999999999999999999999999987643322 111 235
Q ss_pred CCccHHHHHHHhhhhhHHHhhhhhcccc
Q 001906 955 IKLPPWAAGACMALSSVSVVCSSLLLRR 982 (997)
Q Consensus 955 ~~l~p~~a~~~m~~ss~~v~~~s~~l~~ 982 (997)
..++|+. ++.+..++....++.+.+
T Consensus 887 ~~l~~~Q---~l~i~li~~~~~~l~l~~ 911 (1054)
T TIGR01657 887 SNLGDGQ---FLTIDLLLIFPVALLMSR 911 (1054)
T ss_pred CcCccHH---HHHHHHHHHHHHHHHHHc
Confidence 5566554 344445555555655544
No 25
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-65 Score=578.71 Aligned_cols=551 Identities=24% Similarity=0.323 Sum_probs=427.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCce
Q 001906 368 LVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKC 447 (997)
Q Consensus 368 Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~ 447 (997)
|+-=.....|+++++++++ |....|+++++.++++.+.+.++..+..+++++.+++|.+. +..++|+|+ |
T Consensus 189 Lv~EvL~PfYlFQ~fSv~l-----W~~d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~-~~~V~V~R~--g-- 258 (1140)
T KOG0208|consen 189 LVKEVLNPFYLFQAFSVAL-----WLADSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKF-TCPVTVIRD--G-- 258 (1140)
T ss_pred HHHhccchHHHHHhHHhhh-----hhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEEC--C--
Confidence 3333445567777777776 56678888899999999999999999999999999998765 356666654 4
Q ss_pred eeEEEEecCCCCCCCEEEecC-CCcccccEEEEecceeeeccccCCCCcccccCCC-------------------Cceec
Q 001906 448 IEEREIDALLIQSGDTLKVLP-GTKLPADGIVVWGTSYVNESMVTGEAVPVLKEIN-------------------SPVIG 507 (997)
Q Consensus 448 ~~~~~i~~~~l~~GDii~v~~-G~~iPaD~~vl~G~~~Vdes~LTGEs~pv~k~~g-------------------~~v~a 507 (997)
.+++|+++||+||||+.+.+ +...|||+++++|+|.||||+|||||+|+.|.+- +.+|.
T Consensus 259 -~~~ti~S~eLVPGDil~i~~~~~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfc 337 (1140)
T KOG0208|consen 259 -FWETVDSSELVPGDILYIPPPGKIMPCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFC 337 (1140)
T ss_pred -EEEEEeccccccccEEEECCCCeEeecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCcceeec
Confidence 78999999999999999999 9999999999999999999999999999999653 46899
Q ss_pred ceEEee------eeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 001906 508 GTINLH------GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAY 581 (997)
Q Consensus 508 Gt~~~~------g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~ 581 (997)
||.+++ +.+.+.|++||..|..|++.+.+..++ +.+.+-+-|.+ .|+..+.++|++.|++..+....
T Consensus 338 GT~vlq~r~~~g~~v~a~V~RTGF~T~KGqLVRsilyPk--P~~fkfyrds~--~fi~~l~~ia~~gfiy~~i~l~~--- 410 (1140)
T KOG0208|consen 338 GTKVLQARAYLGGPVLAMVLRTGFSTTKGQLVRSILYPK--PVNFKFYRDSF--KFILFLVIIALIGFIYTAIVLNL--- 410 (1140)
T ss_pred cceEEEeecCCCCceEEEEEeccccccccHHHHhhcCCC--CcccHHHHHHH--HHHHHHHHHHHHHHHHHhHhHHH---
Confidence 998875 889999999999999999988776533 23333333333 34444444555555543333221
Q ss_pred CCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCc
Q 001906 582 PEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGR 661 (997)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~ 661 (997)
.+.++...+++++.++.+..|+|||.++.+++..+.+|+.|+||+|.+|..+...|++|++|||||||||++.
T Consensus 411 -------~g~~~~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkkk~IfCisP~rIn~~G~i~~~cFDKTGTLTEdG 483 (1140)
T KOG0208|consen 411 -------LGVPLKTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKKKGIFCISPQRINLCGKLNLVCFDKTGTLTEDG 483 (1140)
T ss_pred -------cCCCHHHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhcCeEEcCccceeecceeeEEEEcCCCcccccc
Confidence 1346788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCC-CH--------HHH----------------HHH-HHHhhcc---------CCCHHHHHHHHHHHhcCC
Q 001906 662 ATVTTAKVFTKM-DR--------GEF----------------LTL-VASAEAS---------SEHPLAKAVVEYARHFHF 706 (997)
Q Consensus 662 ~~v~~~~~~~~~-~~--------~~~----------------l~~-~~~~~~~---------s~~p~~~ai~~~~~~~~~ 706 (997)
+.+..+.+.++. +. ++. ..+ ++.+.++ .++|++..+++...+.-.
T Consensus 484 LDl~gv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~atCHSL~~v~g~l~GDPLdlkmfe~t~w~~e 563 (1140)
T KOG0208|consen 484 LDLWGVVPVERNVDDGPELKVVTEDSLQLFYKLSLRSSSLPMGNLVAAMATCHSLTLVDGTLVGDPLDLKMFESTGWVYE 563 (1140)
T ss_pred eeEEEEEeccccccccchhhhhhhhhccceeeccccccCCchHHHHHHHhhhceeEEeCCeeccCceeeeeeeccceEEE
Confidence 999998874321 00 000 011 1112222 256777766665433210
Q ss_pred C---CCCC-----------CCCCC--CCccccccC-CcccccccccccccCC-eEEEEEcCe----EEEEeeHhhhhhcC
Q 001906 707 F---DDPS-----------LNPDG--QSHSKESTG-SGWLLDVSDFSALPGR-GIQCFISGK----QVLVGNRKLLNESG 764 (997)
Q Consensus 707 ~---~~~~-----------~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~-gi~~~~~g~----~~~ig~~~~~~~~~ 764 (997)
. ++.. ..+.. +....+... ..-+.+-.+|.+...| .+.+...|. .+..|+++.+.+-.
T Consensus 564 e~~~~~~~~~~~~~~~p~v~~p~~~~~~~~t~~~~~~~si~k~feF~S~LrRMSVIv~~~~e~~~~~ftKGaPE~I~~ic 643 (1140)
T KOG0208|consen 564 EADIEDEATREFNTLIPTVVRPPENAFNQSTECGEGEISIVKQFEFSSALRRMSVIVSTGGEDKMMVFTKGAPESIAEIC 643 (1140)
T ss_pred eccccchhhhhhCCccCCEeCCCcccccCCCcCCCcceEEEEecccchhhheEEEEEecCCCCceEeeccCCHHHHHHhc
Confidence 0 0000 00000 000000000 1222333455544443 455555443 46779999988844
Q ss_pred C--CCChhhHHHHHHHHHcCCeEEEEEE---------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCe
Q 001906 765 I--TIPDHVESFVVELEESARTGILVAY---------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVR 821 (997)
Q Consensus 765 ~--~~~~~~~~~~~~~~~~g~~~i~va~---------------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~ 821 (997)
. .+|.++++.++.|..+|+|+|++|. |.+|+|++.|+|++|++++++|+.|++++|+
T Consensus 644 ~p~tvP~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVmeNkLK~~T~~VI~eL~~AnIR 723 (1140)
T KOG0208|consen 644 KPETVPADYQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVMENKLKEETKRVIDELNRANIR 723 (1140)
T ss_pred CcccCCccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEeecccccccHHHHHHHHhhcce
Confidence 4 4699999999999999999999987 6699999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHcCCc----------------------------------------------------------
Q 001906 822 PVMVTGDNWRTAHAVAREIGIQ---------------------------------------------------------- 843 (997)
Q Consensus 822 ~~i~Tgd~~~~a~~ia~~~gi~---------------------------------------------------------- 843 (997)
++|+||||..||..+|++||+.
T Consensus 724 tVMcTGDNllTaisVakeCgmi~p~~~v~~~~~~~~~~~~~~~i~w~~ve~~~~~~~~~~~~~~~~~~~~~~d~~~~~~y 803 (1140)
T KOG0208|consen 724 TVMCTGDNLLTAISVAKECGMIEPQVKVIIPELEPPEDDSIAQIVWLCVESQTQFLDPKEPDPDLASVKLSLDVLSEKDY 803 (1140)
T ss_pred EEEEcCCchheeeehhhcccccCCCCeEEEEeccCCccCCCceeEEEEccCccccCCCCccCccccCCccChhhhcccee
Confidence 9999999999999999999984
Q ss_pred ---------------------------eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHH
Q 001906 844 ---------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDI 896 (997)
Q Consensus 844 ---------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~ 896 (997)
.+|||++|+||.++|+.+|+-|+.|+|+|||+||+.|||+||+||+++. .+
T Consensus 804 hlA~sG~~f~~i~~~~~~l~~~Il~~~~VfARMsP~qK~~Lie~lQkl~y~VgfCGDGANDCgALKaAdvGISLSe--aE 881 (1140)
T KOG0208|consen 804 HLAMSGKTFQVILEHFPELVPKILLKGTVFARMSPDQKAELIEALQKLGYKVGFCGDGANDCGALKAADVGISLSE--AE 881 (1140)
T ss_pred EEEecCchhHHHHhhcHHHHHHHHhcCeEEeecCchhHHHHHHHHHhcCcEEEecCCCcchhhhhhhcccCcchhh--hh
Confidence 3999999999999999999999999999999999999999999999963 34
Q ss_pred HHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 897 AIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIA 945 (997)
Q Consensus 897 ~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la 945 (997)
|.-+|.+.-...+++.++..|++||..+-.-...++|...|.++.....
T Consensus 882 ASvAApFTSk~~~I~cVp~vIrEGRaALVTSf~~FkYMalYs~iqFisv 930 (1140)
T KOG0208|consen 882 ASVAAPFTSKTPSISCVPDVIREGRAALVTSFACFKYMALYSAIQFISV 930 (1140)
T ss_pred HhhcCccccCCCchhhHhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 5567888887789999999999999999999999999999988765433
No 26
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-65 Score=570.32 Aligned_cols=558 Identities=23% Similarity=0.319 Sum_probs=427.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccE
Q 001906 397 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADG 476 (997)
Q Consensus 397 ~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~ 476 (997)
....+.++..++.+......++..|..+.++.+.++.|..+.|+|++ +...+..+++++||++.++-|++||||.
T Consensus 125 nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~ViRdg-----~k~~i~~eelVvGD~v~vk~GdrVPADi 199 (1019)
T KOG0203|consen 125 NLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVIRDG-----EKMTINAEELVVGDLVEVKGGDRVPADI 199 (1019)
T ss_pred ceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheeeecc-----eeEEechhhcccccceeeccCCccccee
Confidence 33345555555566666778888899999999999999999999754 7789999999999999999999999999
Q ss_pred EEEecce-eeeccccCCCCcccccCC----------CCceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCCh
Q 001906 477 IVVWGTS-YVNESMVTGEAVPVLKEI----------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAP 545 (997)
Q Consensus 477 ~vl~G~~-~Vdes~LTGEs~pv~k~~----------g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~ 545 (997)
+++++.. .+|+|+|||||+|..+.+ .+.-|.+|.+.+|.+.+.|.+||.+|.+|++..+.......++|
T Consensus 200 Riis~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~ 279 (1019)
T KOG0203|consen 200 RIISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTGRGIVIATGDRTVMGRIASLASGLEDGKTP 279 (1019)
T ss_pred EEEEecceeEeccccccccCCccCCccccccCchhheeeeeeeeEEecceEEEEEEecCCceEEeehhhhhccCCCCCCc
Confidence 9999986 599999999999999865 35678999999999999999999999999999999888889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHH
Q 001906 546 IQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATG 625 (997)
Q Consensus 546 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~ 625 (997)
+++..+.+..+.....+.+++..|++-...+ ..|..++.+.+.+++...|.+|+..+...+....+
T Consensus 280 ~~~ei~~fi~~it~vAi~~~i~fF~~~~~~g--------------y~~l~avv~~i~iivAnvPeGL~~tvTv~Ltltak 345 (1019)
T KOG0203|consen 280 IAKEIEHFIHIITGVAIFLGISFFILALILG--------------YEWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAK 345 (1019)
T ss_pred chhhhhchHHHHHHHHHHHHHHHHHHHHhhc--------------chhHHHhhhhheeEEecCcCCccceehhhHHHHHH
Confidence 9999999888877777766666665433332 35778888899999999999999999999999999
Q ss_pred HHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCC-------------------HHHHHHHHHHhh
Q 001906 626 VGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD-------------------RGEFLTLVASAE 686 (997)
Q Consensus 626 ~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~-------------------~~~~l~~~~~~~ 686 (997)
+|+++++++||.++.|.||...+||.|||||||+|+|.|..++..+.+. -.++.+++.-+.
T Consensus 346 rMa~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d~~i~~~d~~~~~~~~~~~~~~~~~~~l~r~~~lCn 425 (1019)
T KOG0203|consen 346 RMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFDNQIHEADTTEDQSGQSFDKSSATFIALSRIATLCN 425 (1019)
T ss_pred HHhhceeEEeeeeheeecccceeEeecceeeEEecceEEEeeccCCceeeeechhhhhcccccccCchHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999988654321 112222222111
Q ss_pred ----------------ccCCCHHHHHHHHHHHhcC-CCCCCCCCCCCCCccccccCCcccccccccccccCCeEEEEEcC
Q 001906 687 ----------------ASSEHPLAKAVVEYARHFH-FFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISG 749 (997)
Q Consensus 687 ----------------~~s~~p~~~ai~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g 749 (997)
...+++.+.|+++++...- ..+..+...... .-.+|++....-+......
T Consensus 426 ~a~~~~gq~dvPv~kk~v~G~~se~ALlk~~e~~~~~~~~~R~~~~kv-------------~eipfNSt~Kyqlsih~~~ 492 (1019)
T KOG0203|consen 426 RAVFKPGQDDVPVLKRDVAGDASEVALLKFIELILGSVMELRERNPKV-------------AEIPFNSTNKYQLSIHETE 492 (1019)
T ss_pred cceecccccCCceeeeeccCCHHHHHHHHHHHHhcchHHHHHHhhHHh-------------hcCCcccccceEEEEEecC
Confidence 1146789999999986431 101100000000 0112222222222221111
Q ss_pred -----e--EEEEeeHhhhhhc-------CCCCC--hh----hHHHHHHHHHcCCeEEEEEE-------------------
Q 001906 750 -----K--QVLVGNRKLLNES-------GITIP--DH----VESFVVELEESARTGILVAY------------------- 790 (997)
Q Consensus 750 -----~--~~~ig~~~~~~~~-------~~~~~--~~----~~~~~~~~~~~g~~~i~va~------------------- 790 (997)
+ .+..|+++.+.+. |.+.| .. +.....++...|.|++.+++
T Consensus 493 d~~~~~~~l~mKGape~il~~CSTi~i~g~e~pld~~~~~~f~~ay~~lg~~GerVlgF~~~~l~~~~~p~~~~f~~d~~ 572 (1019)
T KOG0203|consen 493 DPSDPRFLLVMKGAPERILDRCSTILINGEEKPLDEKLKEAFQEAYLELGGLGERVLGFCDLELPDEKFPRGFQFDTDDV 572 (1019)
T ss_pred CCCCccceeeecCChHHHHhhccceeecCCCCCcCHHHHHHHHHHHHHhhhcchHHHHHHHHhcchhcCCCceEeecCCC
Confidence 1 2233555544332 22222 22 22233344455556554332
Q ss_pred -----CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----------------------
Q 001906 791 -----DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---------------------- 843 (997)
Q Consensus 791 -----~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~---------------------- 843 (997)
++.|+|++++-|++|..+++++.++|.+||+++|+|||++.+|+++|+..||.
T Consensus 573 n~p~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn 652 (1019)
T KOG0203|consen 573 NFPTDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVN 652 (1019)
T ss_pred CCcchhccccchhhccCCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccC
Confidence 56899999999999999999999999999999999999999999999999963
Q ss_pred -------------------------------eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEec-
Q 001906 844 -------------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG- 891 (997)
Q Consensus 844 -------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~- 891 (997)
-+|+|.+|+||+.+|+..|+.|..|+.+|||.||+||||.||||||||
T Consensus 653 ~~~a~a~VihG~eL~~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGi 732 (1019)
T KOG0203|consen 653 SRDAKAAVIHGSELPDMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGI 732 (1019)
T ss_pred ccccceEEEecccccccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeecc
Confidence 199999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHHHHHhhhhhH
Q 001906 892 AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSV 971 (997)
Q Consensus 892 ~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~i~la~g~~~~~~g~~l~p~~a~~~m~~ss~ 971 (997)
.|+|.++++||+++++|+|.+++..+++||-+++|.|+.++|.+..|+--|..-+.++ ++|++|+.-.-.++ .+--.
T Consensus 733 aGSDvsKqAADmILLDDNFASIVtGVEEGRLiFDNLKKsIAYTLTsNipEI~PfL~fi--~~giPLplgtitIL-~IDLg 809 (1019)
T KOG0203|consen 733 AGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFI--LFGIPLPLGTVTIL-CIDLG 809 (1019)
T ss_pred ccchHHHhhcceEEecCcchhheeecccceehhhhHHHHHHHHHHhcchhHhHHHHHH--HhCCCcccchhhhh-hhHhh
Confidence 8999999999999999999999999999999999999999999999998764333222 24665542111111 11112
Q ss_pred HHhhhhhccccCCCCCccc
Q 001906 972 SVVCSSLLLRRYKKPRLTT 990 (997)
Q Consensus 972 ~v~~~s~~l~~~~~~~~~~ 990 (997)
.-+.-|..|. |++||+|-
T Consensus 810 TDmvPAiSLA-YE~aEsDI 827 (1019)
T KOG0203|consen 810 TDIVPAISLA-YEKAESDI 827 (1019)
T ss_pred cccchhhhHh-ccCchhhH
Confidence 2344455554 56776553
No 27
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=1.1e-60 Score=604.88 Aligned_cols=567 Identities=19% Similarity=0.210 Sum_probs=419.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccE
Q 001906 397 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADG 476 (997)
Q Consensus 397 ~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~ 476 (997)
++...++++++..++.++|++.++++.+.++ +..++|++++ | +++++++++|+|||+|.|++||+||||+
T Consensus 53 ~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~n------~~~~~v~~~~-~---~~~~i~~~~l~~GDiv~l~~g~~iPaD~ 122 (1057)
T TIGR01652 53 SIVPLAFVLIVTAIKEAIEDIRRRRRDKEVN------NRLTEVLEGH-G---QFVEIPWKDLRVGDIVKVKKDERIPADL 122 (1057)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhHHHHh------CcEEEEECCC-C---cEEEeeeecccCCCEEEEcCCCcccceE
Confidence 3333444444556889999999988776543 4677777543 5 5788999999999999999999999999
Q ss_pred EEEe-----cceeeeccccCCCCcccccCCC------------------------------------------------C
Q 001906 477 IVVW-----GTSYVNESMVTGEAVPVLKEIN------------------------------------------------S 503 (997)
Q Consensus 477 ~vl~-----G~~~Vdes~LTGEs~pv~k~~g------------------------------------------------~ 503 (997)
+|++ |.+.||||.||||+.|+.|.+. +
T Consensus 123 ~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l~~~N 202 (1057)
T TIGR01652 123 LLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYPLSPDN 202 (1057)
T ss_pred EEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCcccCCHHH
Confidence 9998 7789999999999999988531 3
Q ss_pred ceecceEEee-eeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 001906 504 PVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYP 582 (997)
Q Consensus 504 ~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~ 582 (997)
.++.||.+.+ |.+.+.|++||.+|.+++. ....+.+++++++.++++..+++.+.++++++.+++..++... ...
T Consensus 203 ~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n---~~~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~~~-~~~ 278 (1057)
T TIGR01652 203 ILLRGCTLRNTDWVIGVVVYTGHDTKLMRN---ATQAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGAGIWNDA-HGK 278 (1057)
T ss_pred hHhcCCEecCCCeEEEEEEEEchhhhhhhc---CCCCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHheecc-cCC
Confidence 4678888888 9999999999999988664 3334557799999999999888877777777766654333211 111
Q ss_pred CCccCC-------CCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHH------HHHHhc----CcEEecchHHHhhcC
Q 001906 583 EQWLPE-------NGTHFVFALMFSISVVVIACPCALGLATPTAVMVAT------GVGANN----GVLIKGGDALERAQK 645 (997)
Q Consensus 583 ~~~~~~-------~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~------~~~~~~----gilvk~~~~le~lg~ 645 (997)
..|... ....+...+.+++.++...+|.+|+..+.++..... .+|.++ ++.+|+.+.+|+||+
T Consensus 279 ~~~yl~~~~~~~~~~~~~~~~~~~~~~L~~~~IPisL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~E~LG~ 358 (1057)
T TIGR01652 279 DLWYIRLDVSERNAAANGFFSFLTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNEELGQ 358 (1057)
T ss_pred CccceecCcccccchhHHHHHHHHHHHHHhhhcceeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCChHHhcC
Confidence 123210 112355577888999999999999999999998888 677764 599999999999999
Q ss_pred CcEEEecCCCccccCceEEEEEEEcCC-----CC----------------------------------------------
Q 001906 646 IKYVIFDKTGTLTQGRATVTTAKVFTK-----MD---------------------------------------------- 674 (997)
Q Consensus 646 v~~i~fDKTGTLT~~~~~v~~~~~~~~-----~~---------------------------------------------- 674 (997)
+++||+|||||||+|+|.+.++...+. .+
T Consensus 359 v~~I~sDKTGTLT~N~M~~~~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (1057)
T TIGR01652 359 VEYIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFTEIKDAIRERLGSYVENENSMLVESKGFTFVDPRLVDLLKTNKPNAK 438 (1057)
T ss_pred eeEEEEcCCCceeeeeEEEEEEEECCEEecCCcchHHHHhhhcccccccccccccccccccccCcHHHHHhhhcCCchhH
Confidence 999999999999999999999864311 00
Q ss_pred -HHHHHHHHHHh-----h----------ccCCCHHHHHHHHHHHhcCCCCCCCCCCC-C-CCccccccCCcccccccccc
Q 001906 675 -RGEFLTLVASA-----E----------ASSEHPLAKAVVEYARHFHFFDDPSLNPD-G-QSHSKESTGSGWLLDVSDFS 736 (997)
Q Consensus 675 -~~~~l~~~~~~-----~----------~~s~~p~~~ai~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 736 (997)
..+++..++.+ + ..+.+|.+.|++++++..|+.-..+.... . ............+....+|+
T Consensus 439 ~~~~~l~~l~lC~~v~~~~~~~~~~~~~y~~~sp~E~ALl~~a~~~g~~~~~~~~~~~~~~i~~~~~~~~~~il~~~pF~ 518 (1057)
T TIGR01652 439 RINEFFLALALCHTVVPEFNDDGPEEITYQAASPDEAALVKAARDVGFVFFERTPKSISLLIEMHGETKEYEILNVLEFN 518 (1057)
T ss_pred HHHHHHHHHHhcCcccccccCCCCCceEEEccCCcHHHHHHHHHHCCCEEEEecCCceEEEEEeCCCEEEEEEEEecccC
Confidence 01222222111 1 11468999999999988775321111100 0 00000011123445567787
Q ss_pred cccCCeEEE-EEc-Ce--EEEEeeHhhhhhcCC----CCChhhHHHHHHHHHcCCeEEEEEE------------------
Q 001906 737 ALPGRGIQC-FIS-GK--QVLVGNRKLLNESGI----TIPDHVESFVVELEESARTGILVAY------------------ 790 (997)
Q Consensus 737 ~~~g~gi~~-~~~-g~--~~~ig~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~i~va~------------------ 790 (997)
+..++.-.. ... |+ .+..|+++.+.+... ...+.+.+..+++..+|+|++++|+
T Consensus 519 s~rKrmSviv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~~~~a~~GlRtL~~A~k~l~~~e~~~~~~~~~~a 598 (1057)
T TIGR01652 519 SDRKRMSVIVRNPDGRIKLLCKGADTVIFKRLSSGGNQVNEETKEHLENYASEGLRTLCIAYRELSEEEYEEWNEEYNEA 598 (1057)
T ss_pred CCCCeEEEEEEeCCCeEEEEEeCcHHHHHHHhhccchhHHHHHHHHHHHHHHcCCcEEEEEEEECCHHHHHHHHHHHHHH
Confidence 777663222 222 22 456688877655322 1234456677889999999999985
Q ss_pred --------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-------
Q 001906 791 --------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ------- 843 (997)
Q Consensus 791 --------------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~------- 843 (997)
|.+++|+++++|++|++++++|++||++||+++|+|||+..||..+|+++|+.
T Consensus 599 ~~~~~~r~~~~~~~~~~iE~~L~~lG~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~ 678 (1057)
T TIGR01652 599 STALTDREEKLDVVAESIEKDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQI 678 (1057)
T ss_pred HhhhhhHHHHHHHHHHHHHhcCEEEEEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEE
Confidence 45899999999999999999999999999999999999999999999988851
Q ss_pred -------------------------------------------------------------------eEEeccChhhHHH
Q 001906 844 -------------------------------------------------------------------DVMADVMPAGKAD 856 (997)
Q Consensus 844 -------------------------------------------------------------------~~~~~~~p~~K~~ 856 (997)
.+++|++|+||.+
T Consensus 679 ~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~ 758 (1057)
T TIGR01652 679 VITSESLDATRSVEAAIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKAD 758 (1057)
T ss_pred EEecCchhhhHHHHHHHHHHHHHHHHhhhhhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHH
Confidence 1789999999999
Q ss_pred HHHHHhhc-CCEEEEEcCCcCCHHHHhcCCeeEEec-CCcHHHHHhcCEEEecCChhhHHHHH-HHHHHHHHHHHHHHHH
Q 001906 857 AVRSFQKD-GSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAI-DLSRKTFARIRLNYIF 933 (997)
Q Consensus 857 ~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i-~~~r~~~~~i~~n~~~ 933 (997)
+|+.+|+. |+.|+|+|||.||++||++|||||++. .....|+.+||+++. +|..+.+++ ..||.+++++++.+.|
T Consensus 759 IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdVGIgi~g~eg~qA~~aaD~~i~--~F~~L~~lll~~GR~~~~r~~~~i~~ 836 (1057)
T TIGR01652 759 VVRLVKKSTGKTTLAIGDGANDVSMIQEADVGVGISGKEGMQAVMASDFAIG--QFRFLTKLLLVHGRWSYKRISKMILY 836 (1057)
T ss_pred HHHHHHhcCCCeEEEEeCCCccHHHHhhcCeeeEecChHHHHHHHhhhhhhh--hHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 99999998 999999999999999999999999873 222368899999995 599999987 7799999999999999
Q ss_pred HHHHHHHHHHHHh-h-hhccccCCCccHHHHHHHhhhhhHHHhhhhhccc
Q 001906 934 AMAYNVIAIPIAA-G-VFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLR 981 (997)
Q Consensus 934 ~~~~n~i~i~la~-g-~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~ 981 (997)
.+.-|++.+.+.+ + ++..|.| .+|+....++....+...+.++.+.
T Consensus 837 ~~~kn~~~~~~~~~~~~~~~~s~--~~~~~~~~l~~~n~~~t~lp~~~l~ 884 (1057)
T TIGR01652 837 FFYKNLIFAIIQFWYSFYNGFSG--QTLYEGWYMVLYNVFFTALPVISLG 884 (1057)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999987654433 2 2222223 2444444455555566666665553
No 28
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-61 Score=512.64 Aligned_cols=492 Identities=29% Similarity=0.403 Sum_probs=403.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCC-eEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEE
Q 001906 401 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVV 479 (997)
Q Consensus 401 ~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~-~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl 479 (997)
..++++.+++..+-|..++.|.+..-+.|+..... .+++++++ | +.+.+++.+|+.||+|+|+.||.||+||.|+
T Consensus 69 ~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~~~-g---~~~~v~st~Lk~gdiV~V~age~IP~DGeVI 144 (681)
T COG2216 69 TIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLRAD-G---SIEMVPATELKKGDIVLVEAGEIIPSDGEVI 144 (681)
T ss_pred HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhcCC-C---CeeeccccccccCCEEEEecCCCccCCCeEE
Confidence 34445555788999999887766555555543332 33445443 6 6789999999999999999999999999999
Q ss_pred ecceeeeccccCCCCcccccCCC---CceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 001906 480 WGTSYVNESMVTGEAVPVLKEIN---SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASI 556 (997)
Q Consensus 480 ~G~~~Vdes~LTGEs~pv~k~~g---~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 556 (997)
+|.+.||||.+||||.||-|+.| +.|-.||.+.+..++++++....+|++.|++.+++.++.+|+|-+--..-+..-
T Consensus 145 eG~asVdESAITGESaPViresGgD~ssVtGgT~v~SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNEIAL~iLL~~ 224 (681)
T COG2216 145 EGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTPNEIALTILLSG 224 (681)
T ss_pred eeeeecchhhccCCCcceeeccCCCcccccCCcEEeeeeEEEEEEcCCCccHHHHHHHHhhchhccCChhHHHHHHHHHH
Confidence 99999999999999999999998 789999999999999999999999999999999999999999977544433322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEec
Q 001906 557 FVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKG 636 (997)
Q Consensus 557 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk~ 636 (997)
+..+ +-+.+.-.|.+..+.++. ...+...+++++..+|-.++--++--=..++.|+.+.+++.++
T Consensus 225 LTli---FL~~~~Tl~p~a~y~~g~------------~~~i~~LiALlV~LIPTTIGgLLsAIGIAGMdRv~~~NViA~S 289 (681)
T COG2216 225 LTLI---FLLAVATLYPFAIYSGGG------------AASVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVTQFNVIATS 289 (681)
T ss_pred HHHH---HHHHHHhhhhHHHHcCCC------------CcCHHHHHHHHHHHhcccHHHHHHHhhhhhhhHhhhhceeecC
Confidence 2211 111111122222221100 0124456778888889888877777667789999999999999
Q ss_pred chHHHhhcCCcEEEecCCCccccCceEEEEEEEcCCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 001906 637 GDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDG 716 (997)
Q Consensus 637 ~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~ 716 (997)
++++|..|.+|+++.|||||+|-|+-.-.++.+.++.+.+++...+.......+.|-.++|++.+++.+..-.......
T Consensus 290 GRAVEaaGDvdtliLDKTGTIT~GnR~A~~f~p~~gv~~~~la~aa~lsSl~DeTpEGrSIV~LA~~~~~~~~~~~~~~- 368 (681)
T COG2216 290 GRAVEAAGDVDTLLLDKTGTITLGNRQASEFIPVPGVSEEELADAAQLASLADETPEGRSIVELAKKLGIELREDDLQS- 368 (681)
T ss_pred cchhhhcCCccEEEecccCceeecchhhhheecCCCCCHHHHHHHHHHhhhccCCCCcccHHHHHHHhccCCCcccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999998762111100000
Q ss_pred CCccccccCCcccccccccccccCC-eEEEEEcCeEEEEeeHh----hhhhcCCCCChhhHHHHHHHHHcCCeEEEEEEC
Q 001906 717 QSHSKESTGSGWLLDVSDFSALPGR-GIQCFISGKQVLVGNRK----LLNESGITIPDHVESFVVELEESARTGILVAYD 791 (997)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~g~-gi~~~~~g~~~~ig~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~ 791 (997)
-....+|+....+ |+. .-.|+.+..|+.. ++.+.+...|.+++...++.++.|.+++.|..|
T Consensus 369 ------------~~~fvpFtA~TRmSGvd-~~~~~~irKGA~dai~~~v~~~~g~~p~~l~~~~~~vs~~GGTPL~V~~~ 435 (681)
T COG2216 369 ------------HAEFVPFTAQTRMSGVD-LPGGREIRKGAVDAIRRYVRERGGHIPEDLDAAVDEVSRLGGTPLVVVEN 435 (681)
T ss_pred ------------cceeeecceeccccccc-CCCCceeecccHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCceEEEEC
Confidence 0122233333222 221 1123567777754 455566778999999999999999999999999
Q ss_pred CeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcCCEEEEE
Q 001906 792 DNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMV 871 (997)
Q Consensus 792 ~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~v 871 (997)
++++|++.++|.+||+.+|-+.+||++|++.+|+||||+.||..+|++.|++++.++.+||+|.++|+.-|.+|+-|+|+
T Consensus 436 ~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiAeatPEdK~~~I~~eQ~~grlVAMt 515 (681)
T COG2216 436 GRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIAEATPEDKLALIRQEQAEGRLVAMT 515 (681)
T ss_pred CEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhhcCChHHHHHHHHHHHhcCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHH
Q 001906 872 GDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFA 925 (997)
Q Consensus 872 GDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~ 925 (997)
|||.||+|||.+||||+||.+|++.+||++..|=+++|...+.+.+++||+.+-
T Consensus 516 GDGTNDAPALAqAdVg~AMNsGTqAAkEAaNMVDLDS~PTKlievV~IGKqlLi 569 (681)
T COG2216 516 GDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDLDSNPTKLIEVVEIGKQLLI 569 (681)
T ss_pred CCCCCcchhhhhcchhhhhccccHHHHHhhcccccCCCccceehHhhhhhhhee
Confidence 999999999999999999999999999999999999999999999999997653
No 29
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-61 Score=526.88 Aligned_cols=511 Identities=24% Similarity=0.359 Sum_probs=420.6
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCc
Q 001906 392 FWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTK 471 (997)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~ 471 (997)
..+++|-+ ...++.+++++..+...++..+-+....|+.....++.|+|+ | +|.+++++.|+||||+.++.|++
T Consensus 92 ~~~~DW~D-F~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVlRD--G---kw~E~eAs~lVPGDIlsik~GdI 165 (942)
T KOG0205|consen 92 GRPPDWQD-FVGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVLRD--G---KWSEQEASILVPGDILSIKLGDI 165 (942)
T ss_pred CCCcchhh-hhhhheeeeecceeeeeeccccchHHHHHHhccCcccEEeec--C---eeeeeeccccccCceeeeccCCE
Confidence 34456655 344555556666666666667777777887777777878864 4 78999999999999999999999
Q ss_pred ccccEEEEeccee-eeccccCCCCcccccCCCCceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHH
Q 001906 472 LPADGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 550 (997)
Q Consensus 472 iPaD~~vl~G~~~-Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~ 550 (997)
|||||++++|+-+ ||+|.|||||.|+.|++||.+|+||.+.+|++.++|++||.+|+.|+-+.++.. ..+...+|+..
T Consensus 166 iPaDaRLl~gD~LkiDQSAlTGESLpvtKh~gd~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHFqkVL 244 (942)
T KOG0205|consen 166 IPADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKVL 244 (942)
T ss_pred ecCccceecCCccccchhhhcCCccccccCCCCceecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccHHHHH
Confidence 9999999999965 999999999999999999999999999999999999999999999999999988 66788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhh-ccccchhhHHHHHHHHHHHHHh
Q 001906 551 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA-CPCALGLATPTAVMVATGVGAN 629 (997)
Q Consensus 551 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~-~P~al~la~p~~~~~~~~~~~~ 629 (997)
..+..+++..+.+-.++.+++.+... .-.......-+.++++. +|.++|..+++.++++..++++
T Consensus 245 t~IGn~ci~si~~g~lie~~vmy~~q--------------~R~~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rLaq 310 (942)
T KOG0205|consen 245 TGIGNFCICSIALGMLIEITVMYPIQ--------------HRLYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQ 310 (942)
T ss_pred HhhhhHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhhhhheheeeecccccccceeeeehhhHHHHHHHh
Confidence 99998876655544333333221110 01122233445555555 9999999999999999999999
Q ss_pred cCcEEecchHHHhhcCCcEEEecCCCccccCceEEEE--E-EEcCCCCHHHHHHHHHHhh-ccCCCHHHHHHHHHHHhcC
Q 001906 630 NGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT--A-KVFTKMDRGEFLTLVASAE-ASSEHPLAKAVVEYARHFH 705 (997)
Q Consensus 630 ~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~--~-~~~~~~~~~~~l~~~~~~~-~~s~~p~~~ai~~~~~~~~ 705 (997)
+|.+.|...++|.++.+|++|.|||||||.|+++|.+ + ...++.+.++++-.++.+. ....+.+++|++...++.
T Consensus 311 qgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~en~DAID~A~v~~L~dP- 389 (942)
T KOG0205|consen 311 QGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRKENQDAIDAAIVGMLADP- 389 (942)
T ss_pred cccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhhcChhhHHHHHHHhhcCH-
Confidence 9999999999999999999999999999999999988 5 3346778888777666554 345688999999876542
Q ss_pred CCCCCCCCCCCCCccccccCCcccccccccccccCCeEEEEE--cCe--EEEEeeHhhhhh---cCCCCChhhHHHHHHH
Q 001906 706 FFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFI--SGK--QVLVGNRKLLNE---SGITIPDHVESFVVEL 778 (997)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~--~g~--~~~ig~~~~~~~---~~~~~~~~~~~~~~~~ 778 (997)
++...+....+..+|....+|-.-.+. +|+ +...|.+.++.+ ...++|+...+..+++
T Consensus 390 ---------------Keara~ikevhF~PFnPV~Krta~ty~d~dG~~~r~sKGAPeqil~l~~~~~~i~~~vh~~id~~ 454 (942)
T KOG0205|consen 390 ---------------KEARAGIKEVHFLPFNPVDKRTALTYIDPDGNWHRVSKGAPEQILKLCNEDHDIPERVHSIIDKF 454 (942)
T ss_pred ---------------HHHhhCceEEeeccCCccccceEEEEECCCCCEEEecCCChHHHHHHhhccCcchHHHHHHHHHH
Confidence 111123333455566666655433333 343 566788887654 4567888888889999
Q ss_pred HHcCCeEEEEEEC-------------CeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--
Q 001906 779 EESARTGILVAYD-------------DNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-- 843 (997)
Q Consensus 779 ~~~g~~~i~va~~-------------~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~-- 843 (997)
.++|+|.++||++ .+++|+.-+-|++|.+..++|+.....|..|.|+|||....++..++++|+-
T Consensus 455 AeRGlRSLgVArq~v~e~~~~~~g~pw~~~gllp~fdpprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtn 534 (942)
T KOG0205|consen 455 AERGLRSLAVARQEVPEKTKESPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTN 534 (942)
T ss_pred HHhcchhhhhhhhccccccccCCCCCcccccccccCCCCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhccccC
Confidence 9999999999984 2899999999999999999999999999999999999999999999999974
Q ss_pred ----------------------------eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEecCCcH
Q 001906 844 ----------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTD 895 (997)
Q Consensus 844 ----------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~ 895 (997)
+-|+.+.|++|.++++.||++|+.++|.|||.||+|+|+.||+||++..+++
T Consensus 535 mypss~llG~~~~~~~~~~~v~elie~adgfAgVfpehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava~atd 614 (942)
T KOG0205|consen 535 MYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFPEHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAVADATD 614 (942)
T ss_pred cCCchhhccCCCCCCCCCCcHHHHhhhccCccccCHHHHHHHHHHHhhcCceecccCCCcccchhhcccccceeeccchh
Confidence 3678889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 896 IAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 939 (997)
Q Consensus 896 ~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~ 939 (997)
.++.++|+|+..+.++.+..++..+|.++++++....|+++..+
T Consensus 615 aar~asdiVltepglSviI~avltSraIfqrmknytiyavsiti 658 (942)
T KOG0205|consen 615 AARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITI 658 (942)
T ss_pred hhcccccEEEcCCCchhhHHHHHHHHHHHHHHhhheeeeehhHH
Confidence 99999999999999999999999999999999998888766554
No 30
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=1e-54 Score=543.41 Aligned_cols=563 Identities=16% Similarity=0.176 Sum_probs=401.8
Q ss_pred HHHHHHHHHHhhhhcCCCC---cchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEE
Q 001906 376 AYFYSVGALLYGVVTGFWS---PTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEERE 452 (997)
Q Consensus 376 a~~~s~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~ 452 (997)
|++|.++..++..++.... ..++...++++++..++.++|++.++|+++.++ +..++++++ | ++++
T Consensus 115 aN~YFL~I~ilq~ip~~s~~~~~t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N------~~~~~v~~~--~---~~~~ 183 (1178)
T PLN03190 115 AYIYFLVIAVLNQLPQLAVFGRGASILPLAFVLLVTAVKDAYEDWRRHRSDRIEN------NRLAWVLVD--D---QFQE 183 (1178)
T ss_pred hhHHHHHHHHHHhCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc------CcEEEEEEC--C---eEEE
Confidence 4556655555555543222 223333444555556899999999999887654 356777754 4 6788
Q ss_pred EecCCCCCCCEEEecCCCcccccEEEEe-----cceeeeccccCCCCcccccCCCCc-----------------------
Q 001906 453 IDALLIQSGDTLKVLPGTKLPADGIVVW-----GTSYVNESMVTGEAVPVLKEINSP----------------------- 504 (997)
Q Consensus 453 i~~~~l~~GDii~v~~G~~iPaD~~vl~-----G~~~Vdes~LTGEs~pv~k~~g~~----------------------- 504 (997)
+++++|+|||+|+|++||+||||+++++ |.++||||.||||+.|+.|.+++.
T Consensus 184 i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~ 263 (1178)
T PLN03190 184 KKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRN 263 (1178)
T ss_pred EeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhhceEEEEEeCCCcc
Confidence 9999999999999999999999999998 889999999999999999975421
Q ss_pred --eecceE--------------------Eee-eeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001906 505 --VIGGTI--------------------NLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIV 561 (997)
Q Consensus 505 --v~aGt~--------------------~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (997)
-|.|++ +.+ ..+.+.|++||.+|...+- ......+++++++.++++..+++.+.
T Consensus 264 l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i~GvVVYTG~dTK~~~N---~~~~~~K~S~le~~~N~~vi~l~~i~ 340 (1178)
T PLN03190 264 IYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVYCGRETKAMLN---NSGAPSKRSRLETRMNLEIIILSLFL 340 (1178)
T ss_pred ceeEEEEEEECCCcccCCccceeeccceecCCceEEEEEEEechhhhHhhc---CCCCCCCccHHHHHHhHHHHHHHHHH
Confidence 123333 222 2688999999999984321 12233577999999999998888888
Q ss_pred HHHHHHHHHHHHHHhhcCCCC---CCccCC------CC-----cc----HHHHHHHHhhhhhhhccccchhhHHHHHHHH
Q 001906 562 VTLALFTWLCWYVAGVLGAYP---EQWLPE------NG-----TH----FVFALMFSISVVVIACPCALGLATPTAVMVA 623 (997)
Q Consensus 562 l~~a~~~~~~~~~~~~~~~~~---~~~~~~------~~-----~~----~~~~~~~~~svlv~~~P~al~la~p~~~~~~ 623 (997)
++++++++++..++....... ..|... .. .. +...+...+.++...+|.+|.+.+.+.....
T Consensus 341 ~~l~~i~~i~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~lil~~~~IPISL~Vtleivk~~q 420 (1178)
T PLN03190 341 IALCTIVSVCAAVWLRRHRDELDTIPFYRRKDFSEGGPKNYNYYGWGWEIFFTFLMSVIVFQIMIPISLYISMELVRVGQ 420 (1178)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhhcceeeeeeHHHHHHHH
Confidence 878777766543322111000 012110 00 00 1223344455666889999999999999765
Q ss_pred HHHHHhc----------CcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcC----C-C---------------
Q 001906 624 TGVGANN----------GVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFT----K-M--------------- 673 (997)
Q Consensus 624 ~~~~~~~----------gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~----~-~--------------- 673 (997)
...+.+. ++.+|+.+..|+||+|++||+|||||||+|+|.+.++...+ . .
T Consensus 421 a~~I~~D~~m~~~~~~~~~~vr~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i~g~~y~~~~~~~~~~~~~~~~~~~ 500 (1178)
T PLN03190 421 AYFMIRDDQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSDGRTPTQNDHAGYSVEVD 500 (1178)
T ss_pred HHHHHhhhhcccccCCCcceeccCcchhhhccceEEEEcCCCccccceEEEEEEEECCEEcccccccchhhhhccccccc
Confidence 5555442 37899999999999999999999999999999999986521 0 0
Q ss_pred ------------------------C-H-----HHHHHHHHHh--------h-----------ccCCCHHHHHHHHHHHhc
Q 001906 674 ------------------------D-R-----GEFLTLVASA--------E-----------ASSEHPLAKAVVEYARHF 704 (997)
Q Consensus 674 ------------------------~-~-----~~~l~~~~~~--------~-----------~~s~~p~~~ai~~~~~~~ 704 (997)
+ + .+++...+.+ + ..+.+|.+.|++++++..
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~lalChtv~~~~~~~~~~~~~~~~~Y~a~SPdE~ALv~~a~~~ 580 (1178)
T PLN03190 501 GKILRPKMKVKVDPQLLELSKSGKDTEEAKHVHDFFLALAACNTIVPIVVDDTSDPTVKLMDYQGESPDEQALVYAAAAY 580 (1178)
T ss_pred cccccccccccCCHHHHhhhhccccchhhHHHHHHHHHHHhcCCceeeccCCCCCccccceEEecCCCcHHHHHHHHHHC
Confidence 0 0 1122222211 0 123479999999999998
Q ss_pred CCCCCCCCCCCCCCccccccCCcccccccccccccCCeEEEEE--cCe--EEEEeeHhhhhhcCC-----CCChhhHHHH
Q 001906 705 HFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFI--SGK--QVLVGNRKLLNESGI-----TIPDHVESFV 775 (997)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~--~g~--~~~ig~~~~~~~~~~-----~~~~~~~~~~ 775 (997)
|+.-..+.................+..+.+|++..++.-...- +|+ .+..|+++.+.+... ...+.+.+..
T Consensus 581 G~~l~~r~~~~i~i~~~~~~~~~~il~~~pF~S~rKrMSvIv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~l 660 (1178)
T PLN03190 581 GFMLIERTSGHIVIDIHGERQRFNVLGLHEFDSDRKRMSVILGCPDKTVKVFVKGADTSMFSVIDRSLNMNVIRATEAHL 660 (1178)
T ss_pred CCeEecccCCeEEEeeccceecceeEEEecccccccEEEEEEEcCCCcEEEEEecCcHHHHHhhcccccchhHHHHHHHH
Confidence 8632222111110111111123445566788887776433322 232 345688777654321 2234456678
Q ss_pred HHHHHcCCeEEEEEE--------------------------------------CCeEEEEEEecCCCcHhHHHHHHHHHH
Q 001906 776 VELEESARTGILVAY--------------------------------------DDNLIGVMGIADPVKREAAVVVEGLLK 817 (997)
Q Consensus 776 ~~~~~~g~~~i~va~--------------------------------------~~~~lG~i~~~d~~~~~~~~~i~~l~~ 817 (997)
++++++|+|++++|+ |++++|+++++|++|++++++|++|++
T Consensus 661 ~~~a~~GlRtL~lA~k~l~~~e~~~~~~~~~~a~~~~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr~~v~~~I~~l~~ 740 (1178)
T PLN03190 661 HTYSSLGLRTLVVGMRELNDSEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILGASAIEDKLQQGVPEAIESLRT 740 (1178)
T ss_pred HHHHhcCCceEEEEEEeCCHHHHhhHHHHHHHhhhhhhhhHHHHHhhHHhhhcCcEEEEEEEEecCCchhHHHHHHHHHH
Confidence 889999999999874 558999999999999999999999999
Q ss_pred CCCeEEEEcCCCHHHHHHHHHHcCCc------------------------------------------------------
Q 001906 818 MGVRPVMVTGDNWRTAHAVAREIGIQ------------------------------------------------------ 843 (997)
Q Consensus 818 ~gi~~~i~Tgd~~~~a~~ia~~~gi~------------------------------------------------------ 843 (997)
+|++++|+|||+..+|..||+.+|+.
T Consensus 741 agi~v~mlTGD~~~tAi~IA~s~~Ll~~~~~~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 820 (1178)
T PLN03190 741 AGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSKESCRKSLEDALVMSKKLTTVSGISQNTGGSSAAASDPVAL 820 (1178)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhCCCCCCCeeEEecCCchhhHHHHHHHHhhhhhhccccccccccccccccccCCceEE
Confidence 99999999999999999999855440
Q ss_pred ----------------------------eEEeccChhhHHHHHHHHhhc-CCEEEEEcCCcCCHHHHhcCCeeEEec-CC
Q 001906 844 ----------------------------DVMADVMPAGKADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMAIG-AG 893 (997)
Q Consensus 844 ----------------------------~~~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia~~-~~ 893 (997)
-+++|++|+||.++|+.+|+. ++.|+|+|||.||++|+++|||||++. ..
T Consensus 821 VIdG~~L~~~l~~~~~~~f~~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGDGaNDv~mIq~AdVGIGIsG~E 900 (1178)
T PLN03190 821 IIDGTSLVYVLDSELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQE 900 (1178)
T ss_pred EEEcHHHHHHhhhHHHHHHHHHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECCCcchHHHHHhcCeeeeecCch
Confidence 168999999999999999987 578999999999999999999999863 33
Q ss_pred cHHHHHhcCEEEecCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhccccC
Q 001906 894 TDIAIEAADYVLMRNSLEDVIIAID-LSRKTFARIRLNYIFAMAYNVIAIPIAA--GVFFPSLG 954 (997)
Q Consensus 894 ~~~~~~~ad~vl~~~~~~~l~~~i~-~~r~~~~~i~~n~~~~~~~n~i~i~la~--g~~~~~~g 954 (997)
...|..+||+.+ ..|.-|.+++. .||..++++...+.|.|.-|++.+..-+ +++..|.|
T Consensus 901 G~qA~~aSDfaI--~~Fr~L~rLLlvHGr~~y~R~s~~i~y~fYKN~~~~~~qf~f~~~~~fSg 962 (1178)
T PLN03190 901 GRQAVMASDFAM--GQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTCFTL 962 (1178)
T ss_pred hHHHHHhhccch--hhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 347888999999 77999999887 7999999999999999999998654432 44444444
No 31
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-52 Score=465.72 Aligned_cols=477 Identities=22% Similarity=0.259 Sum_probs=348.4
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecC---CC
Q 001906 394 SPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLP---GT 470 (997)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~---G~ 470 (997)
.++||+.+..-++++..-+.--.+++-++...+++|. ..|....|.|+. +|+.+.+++|.|||+|.|.. ..
T Consensus 213 LDeyWYySlFtLfMli~fE~tlV~Qrm~~lse~R~Mg-~kpy~I~v~R~k-----KW~~l~seeLlPgDvVSI~r~~ed~ 286 (1160)
T KOG0209|consen 213 LDEYWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTMG-NKPYTINVYRNK-----KWVKLMSEELLPGDVVSIGRGAEDS 286 (1160)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEEEecC-----cceeccccccCCCceEEeccCcccC
Confidence 3567766655555544333333444444444455443 335556666543 78999999999999999998 56
Q ss_pred cccccEEEEecceeeeccccCCCCcccccCC-----------------CCceecceEEe-------------eeeEEEEE
Q 001906 471 KLPADGIVVWGTSYVNESMVTGEAVPVLKEI-----------------NSPVIGGTINL-------------HGVLHIQA 520 (997)
Q Consensus 471 ~iPaD~~vl~G~~~Vdes~LTGEs~pv~k~~-----------------g~~v~aGt~~~-------------~g~~~~~v 520 (997)
.||||.+++.|+|.|||+||||||.|.-|++ ...+|+||.+. +|-+.+.|
T Consensus 287 ~vPCDllLL~GsciVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~V 366 (1160)
T KOG0209|consen 287 HVPCDLLLLRGSCIVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYV 366 (1160)
T ss_pred cCCceEEEEecceeechhhhcCCCccccccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEE
Confidence 8999999999999999999999999999965 13589999876 48899999
Q ss_pred EEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHH
Q 001906 521 TKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFS 600 (997)
Q Consensus 521 ~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (997)
.+||.+|.-|++.+.+.-..++-+. -++-+.+|+.+.+++|+++..+.+.-|.- +...+-.+-+.-+
T Consensus 367 lrTGFeTSQGkLvRtilf~aervTa----Nn~Etf~FILFLlVFAiaAa~Yvwv~Gsk---------d~~RsrYKL~LeC 433 (1160)
T KOG0209|consen 367 LRTGFETSQGKLVRTILFSAERVTA----NNRETFIFILFLLVFAIAAAGYVWVEGSK---------DPTRSRYKLFLEC 433 (1160)
T ss_pred EeccccccCCceeeeEEecceeeee----ccHHHHHHHHHHHHHHHHhhheEEEeccc---------Ccchhhhheeeee
Confidence 9999999999887655443222221 12334445555555555433221111110 1112233445566
Q ss_pred hhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCC--------
Q 001906 601 ISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-------- 672 (997)
Q Consensus 601 ~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~-------- 672 (997)
+-++...+|.-||+=+++|+..++..++|.||+|..|-++.-+|++|..|||||||||+..|.|.++-....
T Consensus 434 ~LIlTSVvPpELPmELSmAVNsSL~ALak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~~~~~~ 513 (1160)
T KOG0209|consen 434 TLILTSVVPPELPMELSMAVNSSLIALAKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEGALTPA 513 (1160)
T ss_pred eEEEeccCCCCCchhhhHHHHHHHHHHHHhceeecCccccccCCceeEEEecCCCccccccEEEEecccccCCcccccch
Confidence 778888899999999999999999999999999999999999999999999999999999999999865322
Q ss_pred --CCHHHHHHHHH--Hh---h-ccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccCCcccccccccccccCC-eE
Q 001906 673 --MDRGEFLTLVA--SA---E-ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGR-GI 743 (997)
Q Consensus 673 --~~~~~~l~~~~--~~---~-~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-gi 743 (997)
.+.+.+.-++. ++ + .-.++|+++|.++...+.--.++....+++... ...+..-..|.+..+| .+
T Consensus 514 s~~p~~t~~vlAscHsLv~le~~lVGDPlEKA~l~~v~W~~~k~~~v~p~~~~~~------~lkI~~ryhFsSaLKRmsv 587 (1160)
T KOG0209|consen 514 SKAPNETVLVLASCHSLVLLEDKLVGDPLEKATLEAVGWNLEKKNSVCPREGNGK------KLKIIQRYHFSSALKRMSV 587 (1160)
T ss_pred hhCCchHHHHHHHHHHHHHhcCcccCChHHHHHHHhcCcccccCcccCCCcCCCc------ccchhhhhhHHHHHHHHHh
Confidence 11222333332 22 2 235799999999987554222222221111100 1122222334333322 12
Q ss_pred EEEEcC-----e--EEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEE---------------------CCeEE
Q 001906 744 QCFISG-----K--QVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY---------------------DDNLI 795 (997)
Q Consensus 744 ~~~~~g-----~--~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~---------------------~~~~l 795 (997)
.+..++ + .-+.|.++.+.+.=.++|.+|++...+|.++|.|+++++| |+.|.
T Consensus 588 va~~~~~g~s~k~~~aVKGAPEvi~~ml~dvP~dY~~iYk~ytR~GsRVLALg~K~l~~~~~~q~rd~~Re~vEsdLtFa 667 (1160)
T KOG0209|consen 588 VASHQGPGSSEKYFVAVKGAPEVIQEMLRDVPKDYDEIYKRYTRQGSRVLALGYKPLGDMMVSQVRDLKREDVESDLTFA 667 (1160)
T ss_pred hhhcccCCCceEEEEEecCCHHHHHHHHHhCchhHHHHHHHHhhccceEEEEecccccccchhhhhhhhhhhhhhcceee
Confidence 222221 1 2345778887776667899999999999999999999987 56999
Q ss_pred EEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--------------------------------
Q 001906 796 GVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-------------------------------- 843 (997)
Q Consensus 796 G~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~-------------------------------- 843 (997)
|++.|.-++|+|++++|+.|.+.+++++|+||||+.||.++|+++||.
T Consensus 668 GFlif~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~ 747 (1160)
T KOG0209|consen 668 GFLIFSCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLK 747 (1160)
T ss_pred eeEEEeCCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeecCC
Confidence 999999999999999999999999999999999999999999999985
Q ss_pred -------------------------------------eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCe
Q 001906 844 -------------------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADV 886 (997)
Q Consensus 844 -------------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~v 886 (997)
.+|+|+.|.||..+|..+++.|+.++|+|||.||+.|||+|||
T Consensus 748 p~~~~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGDGTNDVGALK~AhV 827 (1160)
T KOG0209|consen 748 PGKKKTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGDGTNDVGALKQAHV 827 (1160)
T ss_pred CCccchhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecCCCcchhhhhhccc
Confidence 2999999999999999999999999999999999999999999
Q ss_pred eEEecCCcH
Q 001906 887 GMAIGAGTD 895 (997)
Q Consensus 887 gia~~~~~~ 895 (997)
|||+-+++.
T Consensus 828 GVALL~~~~ 836 (1160)
T KOG0209|consen 828 GVALLNNPE 836 (1160)
T ss_pred ceehhcCCh
Confidence 999975444
No 32
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-47 Score=418.75 Aligned_cols=548 Identities=21% Similarity=0.259 Sum_probs=390.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccc
Q 001906 395 PTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPA 474 (997)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPa 474 (997)
..||.....++++.+..+..++..+++..+..++ +...+..++ | ....|+++|++||+|.+++++||||
T Consensus 129 ~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Ns------e~y~~ltr~-~----~~~~~Ss~i~vGDvi~v~K~~RVPA 197 (1051)
T KOG0210|consen 129 STYWGPLGFVLTITLIKEAVDDLKRRRRDRELNS------EKYTKLTRD-G----TRREPSSDIKVGDVIIVHKDERVPA 197 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhheeeccC-C----cccccccccccccEEEEecCCcCCc
Confidence 4566566667777788889998887655544433 334455444 3 2334899999999999999999999
Q ss_pred cEEEEe-----cceeeeccccCCCCcccccCC-----------------------------------------------C
Q 001906 475 DGIVVW-----GTSYVNESMVTGEAVPVLKEI-----------------------------------------------N 502 (997)
Q Consensus 475 D~~vl~-----G~~~Vdes~LTGEs~pv~k~~-----------------------------------------------g 502 (997)
|.+++. |+++|-+..|+||+....|-+ .
T Consensus 198 DmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~Lsve 277 (1051)
T KOG0210|consen 198 DMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSVE 277 (1051)
T ss_pred ceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCccccc
Confidence 999996 889999999999987666511 3
Q ss_pred CceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHh--hccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001906 503 SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETA--QMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGA 580 (997)
Q Consensus 503 ~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~ 580 (997)
+.++++|++.+|.+.+.|++||.+|+.. ++.. +.+-..++...+.+.+++...+++++++.... .+.
T Consensus 278 ntLWanTVvAs~t~~gvVvYTG~dtRsv-----MNts~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~---~g~--- 346 (1051)
T KOG0210|consen 278 NTLWANTVVASGTAIGVVVYTGRDTRSV-----MNTSRPRSKVGLLELEINGLTKILFCFVLVLSIVMVAM---KGF--- 346 (1051)
T ss_pred ceeeeeeeEecCcEEEEEEEecccHHHH-----hccCCcccccceeeeecccHHHHHHHHHHHHHHHHHHh---hcC---
Confidence 5799999999999999999999999753 2222 12223445667888888888877777654331 111
Q ss_pred CCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHh----cCcEEecchHHHhhcCCcEEEecCCCc
Q 001906 581 YPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGAN----NGVLIKGGDALERAQKIKYVIFDKTGT 656 (997)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~----~gilvk~~~~le~lg~v~~i~fDKTGT 656 (997)
..+|...+++++-++-..+|..|-.-+.++-..-.....+ .|.++|..+.-|+||++.++.+|||||
T Consensus 347 ---------~~~wyi~~~RfllLFS~IIPISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeLGRIsylLtDKTGT 417 (1051)
T KOG0210|consen 347 ---------GSDWYIYIIRFLLLFSSIIPISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEELGRISYLLTDKTGT 417 (1051)
T ss_pred ---------CCchHHHHHHHHHHHhhhceeEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHhcceEEEEecCcCc
Confidence 2467888999999999999999988888877665555432 478999999999999999999999999
Q ss_pred cccCceEEEEEEEcC----CCCHHHHHHHHHHhhc---------------------------------------------
Q 001906 657 LTQGRATVTTAKVFT----KMDRGEFLTLVASAEA--------------------------------------------- 687 (997)
Q Consensus 657 LT~~~~~v~~~~~~~----~~~~~~~l~~~~~~~~--------------------------------------------- 687 (997)
||+|+|.+++++... ...-+++-+...++-.
T Consensus 418 LTqNEM~~KKiHLGTv~~s~e~~~eV~~~i~s~~~~~~~~~~~~~~~~k~~~s~rv~~~V~alalCHNVTPv~e~~ge~s 497 (1051)
T KOG0210|consen 418 LTQNEMEFKKIHLGTVAYSAETMDEVSQHIQSLYTPGRNKGKGALSRVKKDMSARVRNAVLALALCHNVTPVFEDDGEVS 497 (1051)
T ss_pred cccchheeeeeeeeeeeccHhHHHHHHHHHHHhhCCCcccccccchhhcCcccHHHHHHHHHHHHhccCCcccCCCceEE
Confidence 999999999988641 1122222222222211
Q ss_pred -cCCCHHHHHHHHHHHhcCCCCCCCC-CCCCCCccccccCCcccccccccccccCC-eEEEEEc--Ce--EEEEeeHhhh
Q 001906 688 -SSEHPLAKAVVEYARHFHFFDDPSL-NPDGQSHSKESTGSGWLLDVSDFSALPGR-GIQCFIS--GK--QVLVGNRKLL 760 (997)
Q Consensus 688 -~s~~p~~~ai~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-gi~~~~~--g~--~~~ig~~~~~ 760 (997)
....|.+.|++++.+..|..-..+. .............+..++.+.+|.+..+| ||.+.-. |+ -+..|... +
T Consensus 498 YQAaSPDEVAiVkwTe~VGl~L~~Rd~~~itL~~~~~~~~~yqIL~vFPFtsEtKRMGIIVr~e~~~evtfylKGAD~-V 576 (1051)
T KOG0210|consen 498 YQAASPDEVAIVKWTETVGLKLAKRDRHAITLRVPLDDELNYQILQVFPFTSETKRMGIIVRDETTEEVTFYLKGADV-V 576 (1051)
T ss_pred eecCCCCeEEEEEeeeecceEEeecccceEEEecCCCcceeEEEEEEeccccccceeeEEEecCCCceEEEEEecchH-H
Confidence 1123444444444333222100000 00000111122235566778888887664 7776554 44 23445544 3
Q ss_pred hhcCCCCChhhHHHHHHHHHcCCeEEEEEE---------------------------------------CCeEEEEEEec
Q 001906 761 NESGITIPDHVESFVVELEESARTGILVAY---------------------------------------DDNLIGVMGIA 801 (997)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~g~~~i~va~---------------------------------------~~~~lG~i~~~ 801 (997)
+..-+...+++++...+++++|.|++.+|. |.+++|+.+.+
T Consensus 577 Ms~iVq~NdWleEE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVE 656 (1051)
T KOG0210|consen 577 MSGIVQYNDWLEEECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLSISDRDQKMANVVERYLERDLELLGLTGVE 656 (1051)
T ss_pred HhcccccchhhhhhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCccchHHHHHHHHHHHHHHhhhHHhcccChH
Confidence 444456677778878889999999999986 56899999999
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--------------------------------------
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-------------------------------------- 843 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~-------------------------------------- 843 (997)
|.++++++.+++.||++||++||+|||..++|..+|+..++.
T Consensus 657 DkLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~G~ 736 (1051)
T KOG0210|consen 657 DKLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVIDGE 736 (1051)
T ss_pred HHHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEcCc
Confidence 999999999999999999999999999999999999999874
Q ss_pred ----------------------eEEeccChhhHHHHHHHHhhc-CCEEEEEcCCcCCHHHHhcCCeeEEe-cCCcHHHHH
Q 001906 844 ----------------------DVMADVMPAGKADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMAI-GAGTDIAIE 899 (997)
Q Consensus 844 ----------------------~~~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia~-~~~~~~~~~ 899 (997)
.+++|++|.||+++++.+|++ |.+|+.+|||-||++|+++||+||++ |.....|.-
T Consensus 737 Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~krvc~IGDGGNDVsMIq~A~~GiGI~gkEGkQASL 816 (1051)
T KOG0210|consen 737 SLEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTGKRVCAIGDGGNDVSMIQAADVGIGIVGKEGKQASL 816 (1051)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhCceEEEEcCCCccchheeecccceeeecccccccch
Confidence 288999999999999999975 88999999999999999999999998 555666777
Q ss_pred hcCEEEecCChhhHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHHHHh-hhhccccCCCccHHHHHHHhhhhhHHH
Q 001906 900 AADYVLMRNSLEDVIIAIDL-SRKTFARIRLNYIFA----MAYNVIAIPIAA-GVFFPSLGIKLPPWAAGACMALSSVSV 973 (997)
Q Consensus 900 ~ad~vl~~~~~~~l~~~i~~-~r~~~~~i~~n~~~~----~~~n~i~i~la~-g~~~~~~g~~l~p~~a~~~m~~ss~~v 973 (997)
+||+.+ ..|+.+.+++.+ ||+.+++--+--+|. +...+....... ..|.| ++....-+++..|++-.
T Consensus 817 AADfSI--tqF~Hv~rLLl~HGR~SYkrsa~laqfViHRGL~Is~~Qavfs~v~yF~~-----V~LyqG~LmvgysT~YT 889 (1051)
T KOG0210|consen 817 AADFSI--TQFSHVSRLLLWHGRNSYKRSAKLAQFVIHRGLIISTMQAVFSSVFYFAP-----VALYQGFLMVGYSTCYT 889 (1051)
T ss_pred hccccH--HHHHHHHHHhhccccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcc-----hHHhhhhHHHHHHHHHH
Confidence 999999 669999998874 999988766555543 222332222221 22222 34445555666666655
Q ss_pred hhhhhccc
Q 001906 974 VCSSLLLR 981 (997)
Q Consensus 974 ~~~s~~l~ 981 (997)
.+--..|.
T Consensus 890 mlPVFSlv 897 (1051)
T KOG0210|consen 890 MLPVFSLV 897 (1051)
T ss_pred Hhhhheee
Confidence 55444443
No 33
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-42 Score=417.60 Aligned_cols=554 Identities=17% Similarity=0.198 Sum_probs=399.5
Q ss_pred HHHHHHHHHHhhhhcCCCCcchhhhH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEcCCCceeeEEE
Q 001906 376 AYFYSVGALLYGVVTGFWSPTYFETS---AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKGKCIEERE 452 (997)
Q Consensus 376 a~~~s~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~g~~~~~~~ 452 (997)
|++|.++..++..++ ..+...+.+. +.++.+..+...+|++.|++..+.+++ ..+.|.+++ + ...+
T Consensus 60 aN~yFl~~~il~~ip-~~~~~~~~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN~------~~~~v~~~~-~---~~~~ 128 (1151)
T KOG0206|consen 60 ANLYFLFIAILQFIP-LSPFNPYTTLVPLLFVLGITAIKDAIEDYRRHKQDKEVNN------RKVEVLRGD-G---CFVE 128 (1151)
T ss_pred HHHHHHHHHHHHcCc-ccccCccceeeceeeeehHHHHHHHHhhhhhhhccHHhhc------ceeEEecCC-c---eeee
Confidence 456666666666554 2322222222 233344468889999999888877665 456666432 2 2678
Q ss_pred EecCCCCCCCEEEecCCCcccccEEEEe-----cceeeeccccCCCCcccccCC--------------------------
Q 001906 453 IDALLIQSGDTLKVLPGTKLPADGIVVW-----GTSYVNESMVTGEAVPVLKEI-------------------------- 501 (997)
Q Consensus 453 i~~~~l~~GDii~v~~G~~iPaD~~vl~-----G~~~Vdes~LTGEs~pv~k~~-------------------------- 501 (997)
..++++++||+|.+..++.+|||.++++ |.|+|+++.|+||+....|..
T Consensus 129 ~~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~ 208 (1151)
T KOG0206|consen 129 KKWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPN 208 (1151)
T ss_pred eccceeeeeeEEEeccCCccccceEEecCCCCCceeEEEEeecCCccccceeeehhhhhcccccccccccCCceEEcCCc
Confidence 8999999999999999999999999997 678999999999998877732
Q ss_pred ---------------------CCceecceEEee-eeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 001906 502 ---------------------NSPVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVP 559 (997)
Q Consensus 502 ---------------------g~~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (997)
.+.++.|+.+.+ ..+.+.|+.+|.+|.+.+-.. .+..+++++++..+.....+++
T Consensus 209 ~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~v~G~vv~tG~dtK~~~n~~---~~~~Krs~ier~~n~~i~~~~~ 285 (1151)
T KOG0206|consen 209 ANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEWVYGVVVFTGHDTKLMQNSG---KPPSKRSRIERKMNKIIILLFV 285 (1151)
T ss_pred ccHhhhhhheeeccCCCCCcHHHcccCCceeccCcEEEEEEEEcCCcchHHHhcC---CCccccchhhhhhhhhHHHHHH
Confidence 012445555554 467788999999998866432 2566788999999998888888
Q ss_pred HHHHHHHHHHHHHHHHhhcC--CCCCCccCCCC---ccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHH-------
Q 001906 560 IVVTLALFTWLCWYVAGVLG--AYPEQWLPENG---THFVFALMFSISVVVIACPCALGLATPTAVMVATGVG------- 627 (997)
Q Consensus 560 ~~l~~a~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~------- 627 (997)
+.+.++++..+...++.... ..+..|..... ......+..++.++...+|..|..++.+.-.......
T Consensus 286 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~~il~~~liPISLyvsiEiik~~qs~fi~~D~~my 365 (1151)
T KOG0206|consen 286 LLILMCLISAIGFAIWTRQDGRHNGEWWYLSPSEAAYAGFVHFLTFIILYQYLIPISLYVSIEIVKVLQSIFINNDLDMY 365 (1151)
T ss_pred HHHHHHHHHHhhhheeeeecccccCchhhhcCchHHHHHHHHHHHHHhhhhceEEEEEEEEeeehHHHHHHHcchHHHhh
Confidence 88888877776655443211 11122322211 2345566777778888999999998888766655332
Q ss_pred ---HhcCcEEecchHHHhhcCCcEEEecCCCccccCceEEEEEEEcCC-----C--------------------------
Q 001906 628 ---ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-----M-------------------------- 673 (997)
Q Consensus 628 ---~~~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~-----~-------------------------- 673 (997)
....+.+|+.+..|+||++++|+.|||||||+|.|++.++.+.+. .
T Consensus 366 ~~e~d~~~~~rtsnl~eeLGqv~yIfSDKTGTLT~N~M~F~kCsi~g~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 445 (1151)
T KOG0206|consen 366 DEETDTPAQARTSNLNEELGQVEYIFSDKTGTLTQNSMEFKKCSINGTSYGRNVTEVEAALAKRSGGDVNEHKIKGFTFE 445 (1151)
T ss_pred hccCCCccccccCCchhhhcceeEEEEcCcCccccceeeeecccccCcccccCCChhhcccCccccccccccccccceec
Confidence 246789999999999999999999999999999999998865421 0
Q ss_pred ----------------CHHHHHHHHHH--------------hhccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccc
Q 001906 674 ----------------DRGEFLTLVAS--------------AEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKES 723 (997)
Q Consensus 674 ----------------~~~~~l~~~~~--------------~~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (997)
...+++...+. +.+....|.+.|+++.|++.|+.-..+.......+....
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~f~~~la~chtv~~e~~~~~~~~~Y~A~SPDE~AlV~aAr~~gf~f~~Rt~~~vti~~~g~ 525 (1151)
T KOG0206|consen 446 DSRLVDGLWSSEPQAEDILEFFRALALCHTVIPEKDEDSGKLSYEAESPDEAALVEAARELGFVFLGRTPDSVTIRELGV 525 (1151)
T ss_pred cchhhccccccccCcchHHHHhhHHhccceeeeccCCCccceeeecCCCcHHHHHHHHHhcCceeeeccCceEEEecccc
Confidence 00122322221 123356799999999999998754333222111111111
Q ss_pred cCCcccccccccccccCCeEEEEEc--Ce--EEEEeeHhhhhhc----CCCCChhhHHHHHHHHHcCCeEEEEEE-----
Q 001906 724 TGSGWLLDVSDFSALPGRGIQCFIS--GK--QVLVGNRKLLNES----GITIPDHVESFVVELEESARTGILVAY----- 790 (997)
Q Consensus 724 ~~~~~~~~~~~~~~~~g~gi~~~~~--g~--~~~ig~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~i~va~----- 790 (997)
.....++.+.+|.+.++|.-..... |+ .+..|+...+.+. +....+...+.+++++.+|.|++++|+
T Consensus 526 ~~~y~lL~iLeF~S~RKRMSVIVR~p~g~i~LycKGADsvI~erL~~~~~~~~e~T~~Hl~~yA~eGLRTLc~A~r~l~e 605 (1151)
T KOG0206|consen 526 EETYELLNVLEFNSTRKRMSVIVRDPDGRILLYCKGADSVIFERLSKNGEKLREKTQEHLEEYATEGLRTLCLAYRELDE 605 (1151)
T ss_pred ceeEEEEEEeccccccceeEEEEEcCCCcEEEEEcCcchhhHhhhhhcchHHHHHHHHHHHHHHhhhhhHhhhhhhccCH
Confidence 2256677788888887764322222 12 2333444443331 112223334467788999999999987
Q ss_pred ---------------------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 001906 791 ---------------------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA 837 (997)
Q Consensus 791 ---------------------------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia 837 (997)
|+.++|..++||+++++++++|+.|+++|||+||+|||..+||..|+
T Consensus 606 ~eY~~w~~~~~~A~ts~~~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg 685 (1151)
T KOG0206|consen 606 EEYEEWNERYNEAKTSLTDREELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIG 685 (1151)
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999
Q ss_pred HHcCCc--------------------------------------------------------------------------
Q 001906 838 REIGIQ-------------------------------------------------------------------------- 843 (997)
Q Consensus 838 ~~~gi~-------------------------------------------------------------------------- 843 (997)
-.|++.
T Consensus 686 ~sC~Ll~~~m~~i~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~aLVIDGktl~~aL~~~~~~~Fl~l 765 (1151)
T KOG0206|consen 686 YSCRLLRQDMKLIIINTETSEELSSLDATAALKETLLRKFTEELEEAKLEHSEKPFALVIDGKTLAYALEDELRKKFLEL 765 (1151)
T ss_pred HhhcCCCCCceEEEEecCChhhhcchhhHHHHHHHHHHhhhHHHHHHhhccCcCCceEEEECHHHHhhhCchhhHHHHHH
Confidence 888752
Q ss_pred ------eEEeccChhhHHHHHHHHh-hcCCEEEEEcCCcCCHHHHhcCCeeEEec-CCcHHHHHhcCEEEecCChhhHHH
Q 001906 844 ------DVMADVMPAGKADAVRSFQ-KDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVII 915 (997)
Q Consensus 844 ------~~~~~~~p~~K~~~v~~l~-~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~ 915 (997)
.+++|++|.||+.+++..+ ..+..+++||||+||++|++.|||||+++ .....|..++|+.+. .|.-+.+
T Consensus 766 a~~C~sViCCR~sPlQKA~Vv~lVk~~~~~~TLAIGDGANDVsMIQ~AhVGVGIsG~EGmQAvmsSD~AIa--qFrfL~r 843 (1151)
T KOG0206|consen 766 AKRCKSVICCRVSPLQKALVVKLVKKGLKAVTLAIGDGANDVSMIQEAHVGVGISGQEGMQAVMSSDFAIA--QFRFLER 843 (1151)
T ss_pred HHhcCEEEEccCCHHHHHHHHHHHHhcCCceEEEeeCCCccchheeeCCcCeeeccchhhhhhhcccchHH--HHHHHhh
Confidence 2888999999999999997 45789999999999999999999999996 556677789999984 4555655
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 916 AID-LSRKTFARIRLNYIFAMAYNVIAIPIA 945 (997)
Q Consensus 916 ~i~-~~r~~~~~i~~n~~~~~~~n~i~i~la 945 (997)
++. .||..+.++.+.+.+.|+.|+.....-
T Consensus 844 LLLVHGhW~Y~R~a~~ilyfFYKNi~f~~~~ 874 (1151)
T KOG0206|consen 844 LLLVHGHWSYIRLAKMILYFFYKNIAFTFTL 874 (1151)
T ss_pred hheeecceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 699999999999999999999775443
No 34
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=2.4e-33 Score=298.22 Aligned_cols=223 Identities=30% Similarity=0.555 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCe-EEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEEe-
Q 001906 403 MLITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-ALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVW- 480 (997)
Q Consensus 403 ~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~-~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~- 480 (997)
+++++++++.+++.+.++|.++.++++.+..+++ +++.++ | +++++++++|+|||+|.+++||++||||+|++
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~--~---~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~~ 75 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRD--G---RWQKIPSSELVPGDIIILKAGDIVPADGILLES 75 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEET--T---EEEEEEGGGT-TTSEEEEETTEBESSEEEEEES
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEec--c---ccccchHhhccceeeeecccccccccCccceec
Confidence 3677888999999999999999999999988887 555543 4 78999999999999999999999999999999
Q ss_pred cceeeeccccCCCCcccccC-----CCCceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 001906 481 GTSYVNESMVTGEAVPVLKE-----INSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVAS 555 (997)
Q Consensus 481 G~~~Vdes~LTGEs~pv~k~-----~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 555 (997)
|.+.||||.+|||+.|+.|. .|+.+|+||.+.+|.+.++|+++|.+|..+++.+.....+.+++++++..+++..
T Consensus 76 g~~~vd~s~ltGes~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (230)
T PF00122_consen 76 GSAYVDESALTGESEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIAK 155 (230)
T ss_dssp SEEEEECHHHHSBSSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHHH
Confidence 99999999999999999999 9999999999999999999999999999999999998888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHhcCcEEe
Q 001906 556 IFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIK 635 (997)
Q Consensus 556 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~~~~~gilvk 635 (997)
++++++++++++++++|++. ....+|...+..++++++.+|||+|++++|+++..+..++.++|+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~~i~v~ 223 (230)
T PF00122_consen 156 ILIIIILAIAILVFIIWFFN------------DSGISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKNGIIVK 223 (230)
T ss_dssp HHHHHHHHHHHHHHHHCHTG------------STTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHTTEEES
T ss_pred HHHhcccccchhhhccceec------------ccccccccccccccceeeeecccceeehHHHHHHHHHHHHHHCCEEEe
Confidence 99999999998888766552 113456778999999999999999999999999999999999999999
Q ss_pred cchHHHh
Q 001906 636 GGDALER 642 (997)
Q Consensus 636 ~~~~le~ 642 (997)
+++++|.
T Consensus 224 ~~~a~E~ 230 (230)
T PF00122_consen 224 NLSALEA 230 (230)
T ss_dssp STTHHHH
T ss_pred CcccccC
Confidence 9999995
No 35
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.94 E-value=2.4e-27 Score=249.73 Aligned_cols=209 Identities=38% Similarity=0.575 Sum_probs=178.0
Q ss_pred CcEEEecCCCccccCceEEEEEEEcCCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCccccccC
Q 001906 646 IKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTG 725 (997)
Q Consensus 646 v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~~p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (997)
|++||||||||||++++.+ .. .....++.++...+..+.||+..++..++.....
T Consensus 1 i~~i~fDktGTLt~~~~~v----~~--~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~------------------- 55 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV----AP--PSNEAALAIAAALEQGSEHPIGKAIVEFAKNHQW------------------- 55 (215)
T ss_dssp ESEEEEECCTTTBESHHEE----ES--CSHHHHHHHHHHHHCTSTSHHHHHHHHHHHHHHH-------------------
T ss_pred CeEEEEecCCCcccCeEEE----Ee--ccHHHHHHHHHHhhhcCCCcchhhhhhhhhhccc-------------------
Confidence 5899999999999999999 11 6678899999999999999999999999876421
Q ss_pred CcccccccccccccCCeEEEEEcCeEEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCc
Q 001906 726 SGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVK 805 (997)
Q Consensus 726 ~~~~~~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~ 805 (997)
. ..+.++....++|+...+++. +. |+.+++.+..... .............+.+.+.++.++.++|.+.+.|++|
T Consensus 56 --~-~~~~~~~~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 129 (215)
T PF00702_consen 56 --S-KSLESFSEFIGRGISGDVDGI-YL-GSPEWIHELGIRV-ISPDLVEEIQESQGRTVIVLAVNLIFLGLFGLRDPLR 129 (215)
T ss_dssp --H-SCCEEEEEETTTEEEEEEHCH-EE-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCEEEEESHEEEEEEEEEEEBH
T ss_pred --h-hhhhhheeeeecccccccccc-cc-ccchhhhhccccc-cccchhhhHHHhhCCcccceeecCeEEEEEeecCcch
Confidence 0 015677888999999999988 44 8888877654321 1112223334566777888888999999999999999
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--EEecc--ChhhH--HHHHHHHhhcCCEEEEEcCCcCCHH
Q 001906 806 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMADV--MPAGK--ADAVRSFQKDGSIVAMVGDGINDSP 879 (997)
Q Consensus 806 ~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~--~~~~~--~p~~K--~~~v~~l~~~g~~v~~vGDg~nD~~ 879 (997)
++++++|+.|+++|++++|+|||+..++..+++++||.+ ++++. +|++| .++++.|+.+++.|+|||||.||++
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~nD~~ 209 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDGVNDAP 209 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESSGGHHH
T ss_pred hhhhhhhhhhhccCcceeeeeccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEccCHHHHH
Confidence 999999999999999999999999999999999999987 99999 99999 9999999977779999999999999
Q ss_pred HHhcCC
Q 001906 880 ALAAAD 885 (997)
Q Consensus 880 al~~A~ 885 (997)
|+++||
T Consensus 210 al~~Ag 215 (215)
T PF00702_consen 210 ALKAAG 215 (215)
T ss_dssp HHHHSS
T ss_pred HHHhCc
Confidence 999997
No 36
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.63 E-value=4e-15 Score=132.72 Aligned_cols=125 Identities=26% Similarity=0.354 Sum_probs=111.7
Q ss_pred ECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--eEEeccChhhHHHHHHHHhhcCCE
Q 001906 790 YDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--DVMADVMPAGKADAVRSFQKDGSI 867 (997)
Q Consensus 790 ~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~--~~~~~~~p~~K~~~v~~l~~~g~~ 867 (997)
+-+++.+.++-.-.+-++++++|++|++. +++++.|||...+....|+-.|++ .+++...|+.|.++++.|++++++
T Consensus 17 ~~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k 95 (152)
T COG4087 17 KAGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEK 95 (152)
T ss_pred ecceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcE
Confidence 45678899999999999999999999999 999999999999999999999997 688999999999999999999999
Q ss_pred EEEEcCCcCCHHHHhcCCeeEEe-c--CCcHHHHHhcCEEEecCChhhHHHHH
Q 001906 868 VAMVGDGINDSPALAAADVGMAI-G--AGTDIAIEAADYVLMRNSLEDVIIAI 917 (997)
Q Consensus 868 v~~vGDg~nD~~al~~A~vgia~-~--~~~~~~~~~ad~vl~~~~~~~l~~~i 917 (997)
|+|||||+||.+||++||+||.. + +..+.+.++||+++ .++..+.++.
T Consensus 96 ~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvi--k~i~e~ldl~ 146 (152)
T COG4087 96 VVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVL--KEIAEILDLL 146 (152)
T ss_pred EEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhh--hhHHHHHHHh
Confidence 99999999999999999999876 4 45778889999998 4455554443
No 37
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.52 E-value=6.9e-14 Score=162.85 Aligned_cols=145 Identities=41% Similarity=0.671 Sum_probs=133.5
Q ss_pred EEEEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhhhcccCCCCCCCCc
Q 001906 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQG 126 (997)
Q Consensus 47 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~ 126 (997)
+-.+++.||+|++|++++|+.+++.+|+.++.+.+..+++.+.||+...+.+.+.+.+++.||+++..+..... .+
T Consensus 70 ~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~----~~ 145 (951)
T KOG0207|consen 70 KCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGN----SN 145 (951)
T ss_pred eeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCC----CC
Confidence 55699999999999999999999999999999999999999999999999999999999999999876654321 11
Q ss_pred ceecccccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001906 127 TIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (997)
Q Consensus 127 ~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~ 196 (997)
.++.|.|.||.|.+|+.++|+.+.+++||.++++++.++++.|.|||..++++++++.+++.||++...
T Consensus 146 -~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~ 214 (951)
T KOG0207|consen 146 -QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVR 214 (951)
T ss_pred -CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceee
Confidence 467899999999999999999999999999999999999999999999999999999999999998653
No 38
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.47 E-value=5.9e-11 Score=148.84 Aligned_cols=128 Identities=24% Similarity=0.381 Sum_probs=106.0
Q ss_pred ecccccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccC---------
Q 001906 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSS--------- 199 (997)
Q Consensus 129 ~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~~~~--------- 199 (997)
+.++.|+||+|++|+.+|++++++++||.++++++. +.++.++ .+.+.+.+.++++||++....+.
T Consensus 4 ~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~ 78 (834)
T PRK10671 4 TIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASAEALIETIKQAGYDASVSHPKAKPLTESSI 78 (834)
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCHHHHHHHHHhcCCccccccccccccccccc
Confidence 468999999999999999999999999999999994 4555543 47899999999999998763210
Q ss_pred ------------------CccceeeeecCccchhhhHHHHhhhhcCCCceEEEeecCCCeEEEEecCCCCCchhhhhhhc
Q 001906 200 ------------------GQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIA 261 (997)
Q Consensus 200 ------------------~~~~~~l~v~gm~c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~~d~~~~~~~~i~~~i~ 261 (997)
...+.++.+.||+|..|+..+++.+.+.+||.++.+|+.+++..+.+. .+++++.+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~---~s~~~I~~~I~ 155 (834)
T PRK10671 79 PSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGS---ASPQDLVQAVE 155 (834)
T ss_pred CchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEcc---CCHHHHHHHHH
Confidence 012456889999999999999999999999999999999999888742 45677777777
Q ss_pred ccC
Q 001906 262 GRS 264 (997)
Q Consensus 262 ~~g 264 (997)
+.|
T Consensus 156 ~~G 158 (834)
T PRK10671 156 KAG 158 (834)
T ss_pred hcC
Confidence 776
No 39
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.17 E-value=8.1e-11 Score=96.72 Aligned_cols=62 Identities=45% Similarity=0.737 Sum_probs=59.5
Q ss_pred ccccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCc
Q 001906 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFE 192 (997)
Q Consensus 131 ~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~ 192 (997)
+|+|+||+|++|+.+|+++|.+++||.++++|+.+++++|.|++...++++|.+.|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 47899999999999999999999999999999999999999999888999999999999995
No 40
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.15 E-value=1.7e-10 Score=107.42 Aligned_cols=115 Identities=23% Similarity=0.363 Sum_probs=97.1
Q ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhc----CCEEEEEcCCcCCHHHHhcCCe
Q 001906 811 VVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKD----GSIVAMVGDGINDSPALAAADV 886 (997)
Q Consensus 811 ~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~v 886 (997)
.|+.|.+.|+++.++||++...+..-+++|||..+|.... +|....+.|.++ .+.|+++||..||.|+|+..++
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~~--dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGl 120 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGIS--DKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGL 120 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeechH--hHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCC
Confidence 4688899999999999999999999999999999998754 788777776654 5679999999999999999999
Q ss_pred eEEecCCcHHHHHhcCEEEecCC----hhhHHHHHHHHHHHHHHH
Q 001906 887 GMAIGAGTDIAIEAADYVLMRNS----LEDVIIAIDLSRKTFARI 927 (997)
Q Consensus 887 gia~~~~~~~~~~~ad~vl~~~~----~~~l~~~i~~~r~~~~~i 927 (997)
++++.++.+..++.||+|+..+. ...+.++|..++..+...
T Consensus 121 s~a~~dAh~~v~~~a~~Vt~~~GG~GAvREv~dlil~aq~~~d~~ 165 (170)
T COG1778 121 SVAVADAHPLLKQRADYVTSKKGGEGAVREVCDLILQAQGKLDEA 165 (170)
T ss_pred cccccccCHHHHHhhHhhhhccCcchHHHHHHHHHHHccCcHHHH
Confidence 99999999999999999997654 555666666666554443
No 41
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.14 E-value=1.8e-10 Score=96.71 Aligned_cols=69 Identities=43% Similarity=0.641 Sum_probs=64.5
Q ss_pred ceEEEEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhh
Q 001906 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (997)
Q Consensus 45 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (997)
|++..+.++||+|.+|+.+|+++|++++||..+++++..+++.+.+++...+.+++.++++++||.+..
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeee
Confidence 467789999999999999999999999999999999999999999998778999999999999998753
No 42
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.13 E-value=1.8e-10 Score=94.66 Aligned_cols=62 Identities=44% Similarity=0.670 Sum_probs=59.2
Q ss_pred EEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcc
Q 001906 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFE 110 (997)
Q Consensus 49 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 110 (997)
+|.|+||+|++|+++|+++|.++|||.++.+|+.++++.+.++++..+++++.++++++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 48899999999999999999999999999999999999999998878889999999999995
No 43
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.11 E-value=3.8e-10 Score=124.20 Aligned_cols=115 Identities=22% Similarity=0.301 Sum_probs=101.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec-----------------cChhhHHHHHHHHhhc-
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----------------VMPAGKADAVRSFQKD- 864 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~- 864 (997)
++.|++.+.++.|++.|+++.++||.....+..+.+++|++.+++. +..+.|.+.++.+.++
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~l 260 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEY 260 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHc
Confidence 5889999999999999999999999998899999999999875541 1345788888887654
Q ss_pred ---CCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHH
Q 001906 865 ---GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 865 ---g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
.+.++++|||.||.+|++.|++||+| ++.+.+++.||+++..++++++..++.
T Consensus 261 gi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nAkp~Vk~~Ad~~i~~~~l~~~l~~~~ 316 (322)
T PRK11133 261 EIPLAQTVAIGDGANDLPMIKAAGLGIAY-HAKPKVNEQAQVTIRHADLMGVLCILS 316 (322)
T ss_pred CCChhhEEEEECCHHHHHHHHHCCCeEEe-CCCHHHHhhCCEEecCcCHHHHHHHhc
Confidence 36799999999999999999999999 889999999999999899999988764
No 44
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.10 E-value=4e-10 Score=116.16 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=99.6
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEe--------c-------cChhhHHHHHHHHhhcCCE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA--------D-------VMPAGKADAVRSFQKDGSI 867 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~--------~-------~~p~~K~~~v~~l~~~g~~ 867 (997)
++.|++.+.|+.||+.| +++++||.....+..+++++|++.+++ . ..++.|..+++.+++.|..
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~~ 146 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYR 146 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCCC
Confidence 57999999999999975 999999999999999999999987665 1 2456899999999888888
Q ss_pred EEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHH
Q 001906 868 VAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLS 920 (997)
Q Consensus 868 v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~ 920 (997)
++++|||.||.+|++.||+||++. +.+..++.||=.-.-.+.+.+...+..+
T Consensus 147 ~v~vGDs~nDl~ml~~Ag~~ia~~-ak~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T TIGR02137 147 VIAAGDSYNDTTMLSEAHAGILFH-APENVIREFPQFPAVHTYEDLKREFLKA 198 (203)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEec-CCHHHHHhCCCCCcccCHHHHHHHHHHH
Confidence 999999999999999999999995 5566666666555567788888888776
No 45
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.10 E-value=5.9e-10 Score=121.67 Aligned_cols=132 Identities=23% Similarity=0.346 Sum_probs=102.2
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--------------------
Q 001906 784 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-------------------- 843 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~-------------------- 843 (997)
+.+++-.||+++.- ...+.+.++++|++|+++|++++++||++...+..+.+++|++
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~~~~~~ 80 (270)
T PRK10513 4 KLIAIDMDGTLLLP---DHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQPGDYCITNNGALVQKAADG 80 (270)
T ss_pred EEEEEecCCcCcCC---CCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCCCCCeEEEcCCeEEEECCCC
Confidence 45677778888853 4579999999999999999999999999999999999999862
Q ss_pred ---------------------------------eEEec----------------c-----------------------Ch
Q 001906 844 ---------------------------------DVMAD----------------V-----------------------MP 851 (997)
Q Consensus 844 ---------------------------------~~~~~----------------~-----------------------~p 851 (997)
..+.. . .+
T Consensus 81 ~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (270)
T PRK10513 81 ETVAQTALSYDDYLYLEKLSREVGVHFHALDRNTLYTANRDISYYTVHESFLTGIPLVFREVEKMDPNLQFPKVMMIDEP 160 (270)
T ss_pred CEEEecCCCHHHHHHHHHHHHHcCCcEEEEECCEEEEecCCcchhHHHhhhhccCCccccchhhccccCCceEEEEeCCH
Confidence 00100 0 00
Q ss_pred h----------------------------------hHHHHHHHHhh----cCCEEEEEcCCcCCHHHHhcCCeeEEecCC
Q 001906 852 A----------------------------------GKADAVRSFQK----DGSIVAMVGDGINDSPALAAADVGMAIGAG 893 (997)
Q Consensus 852 ~----------------------------------~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~vgia~~~~ 893 (997)
+ .|...++.+.+ ..+.|+++|||.||.+||+.|++|+||+|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA 240 (270)
T PRK10513 161 EILDAAIARIPAEVKERYTVLKSAPYFLEILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNA 240 (270)
T ss_pred HHHHHHHHHhHHHhcCcEEEEEecCeeEEEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCc
Confidence 0 01111111111 024589999999999999999999999999
Q ss_pred cHHHHHhcCEEEecCChhhHHHHHH
Q 001906 894 TDIAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 894 ~~~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
.+.+|+.||+|+.+++-+++.++|+
T Consensus 241 ~~~vK~~A~~vt~~n~~dGva~~i~ 265 (270)
T PRK10513 241 IPSVKEVAQFVTKSNLEDGVAFAIE 265 (270)
T ss_pred cHHHHHhcCeeccCCCcchHHHHHH
Confidence 9999999999999999999998886
No 46
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.07 E-value=1.2e-09 Score=107.85 Aligned_cols=105 Identities=21% Similarity=0.286 Sum_probs=88.5
Q ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhh----cCCEEEEEcCCcCCHHHHhcCCe
Q 001906 811 VVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQK----DGSIVAMVGDGINDSPALAAADV 886 (997)
Q Consensus 811 ~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~v 886 (997)
+|++|+++|+++.++||++...+..+.+++|+..++... ..|.+.++.+.+ ..+.++|+||+.||.+|++.|++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~~--~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~ 113 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQGQ--SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGL 113 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEecc--cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCC
Confidence 899999999999999999999999999999999888764 456666655543 34679999999999999999999
Q ss_pred eEEecCCcHHHHHhcCEEEecCChhh-HHHHH
Q 001906 887 GMAIGAGTDIAIEAADYVLMRNSLED-VIIAI 917 (997)
Q Consensus 887 gia~~~~~~~~~~~ad~vl~~~~~~~-l~~~i 917 (997)
++++.++.+..+..||+++.++.-++ +.+++
T Consensus 114 ~~~v~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 145 (154)
T TIGR01670 114 SVAVADAHPLLIPRADYVTRIAGGRGAVREVC 145 (154)
T ss_pred eEecCCcCHHHHHhCCEEecCCCCCcHHHHHH
Confidence 99999888899999999997665333 44443
No 47
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.06 E-value=1.2e-09 Score=116.32 Aligned_cols=132 Identities=24% Similarity=0.327 Sum_probs=104.1
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-------------------
Q 001906 784 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 844 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~------------------- 844 (997)
+.+++-.||+++- =...+.+.+.++|++|++.|++++++||++...+..+.+.+|+..
T Consensus 4 kli~~DlDGTLl~---~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~ 80 (230)
T PRK01158 4 KAIAIDIDGTITD---KDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKRI 80 (230)
T ss_pred eEEEEecCCCcCC---CCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEEEcCCCCEE
Confidence 4667778888874 123488999999999999999999999999999999999999851
Q ss_pred ------------------------EEe------------------------------------------ccChh--hHHH
Q 001906 845 ------------------------VMA------------------------------------------DVMPA--GKAD 856 (997)
Q Consensus 845 ------------------------~~~------------------------------------------~~~p~--~K~~ 856 (997)
.+. ++.|. .|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg~ 160 (230)
T PRK01158 81 FLGDIEECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKGT 160 (230)
T ss_pred EEcchHHHHHHHHHHHHhccccceeeecCCcccccceeeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChHH
Confidence 000 01111 1333
Q ss_pred HHHHHhhc----CCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHH
Q 001906 857 AVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 857 ~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
.++.+.+. .+.++++||+.||.+|++.|++|++|+|+.+.+++.||++..+++-+++.++++
T Consensus 161 al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~vk~~a~~v~~~n~~~Gv~~~l~ 226 (230)
T PRK01158 161 GLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANADEELKEAADYVTEKSYGEGVAEAIE 226 (230)
T ss_pred HHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCccHHHHHhcceEecCCCcChHHHHHH
Confidence 33333322 346899999999999999999999999999999999999999999999998876
No 48
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.04 E-value=9.6e-10 Score=120.08 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=101.5
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-------------------
Q 001906 784 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 844 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~------------------- 844 (997)
+.+++-.||+++. -...+.+.++++|++|+++|++++++||++...+..+.+++|++.
T Consensus 3 kli~~DlDGTLl~---~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~~~~~~~l~ 79 (272)
T PRK15126 3 RLAAFDMDGTLLM---PDHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVHSLEGELLH 79 (272)
T ss_pred cEEEEeCCCcCcC---CCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEEcCCCCEEE
Confidence 3566677888875 244699999999999999999999999999999999999999850
Q ss_pred ------------------------------EEe-----------------------------------------------
Q 001906 845 ------------------------------VMA----------------------------------------------- 847 (997)
Q Consensus 845 ------------------------------~~~----------------------------------------------- 847 (997)
.+.
T Consensus 80 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~ 159 (272)
T PRK15126 80 RQDLPADVAELVLHQQWDTRASMHVFNDDGWFTGKEIPALLQAHVYSGFRYQLIDLKRLPAHGVTKICFCGDHDDLTRLQ 159 (272)
T ss_pred eecCCHHHHHHHHHHhhhcCcEEEEEcCCeEEecCCcHHHHHHHHhcCCceEEecHHHccccCceEEEEECCHHHHHHHH
Confidence 000
Q ss_pred ---------------------ccChh--hHHHHHHHHhhc----CCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHh
Q 001906 848 ---------------------DVMPA--GKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEA 900 (997)
Q Consensus 848 ---------------------~~~p~--~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ 900 (997)
++.|. .|...++.+.+. .+.|+++||+.||.+||+.|+.|+||||+.+.+|+.
T Consensus 160 ~~l~~~~~~~~~~~~s~~~~~eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~ 239 (272)
T PRK15126 160 IQLNEALGERAHLCFSATDCLEVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAE 239 (272)
T ss_pred HHHHHHhcCCEEEEEcCCcEEEeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHh
Confidence 00000 122222222211 246899999999999999999999999999999999
Q ss_pred cCE--EEecCChhhHHHHHH
Q 001906 901 ADY--VLMRNSLEDVIIAID 918 (997)
Q Consensus 901 ad~--vl~~~~~~~l~~~i~ 918 (997)
||. ++.+++-+++.++|+
T Consensus 240 A~~~~v~~~n~edGva~~l~ 259 (272)
T PRK15126 240 LPHLPVIGHCRNQAVSHYLT 259 (272)
T ss_pred CCCCeecCCCcchHHHHHHH
Confidence 996 677888889988885
No 49
>PRK10976 putative hydrolase; Provisional
Probab=99.04 E-value=1.2e-09 Score=118.84 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=101.2
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-------------------
Q 001906 784 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 844 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~------------------- 844 (997)
+.+++-.||+++.- ...+.+.++++|++|+++|++++++||++...+..+.+.+|++.
T Consensus 3 kli~~DlDGTLl~~---~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~~i~ 79 (266)
T PRK10976 3 QVVASDLDGTLLSP---DHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKSYMITSNGARVHDTDGNLIF 79 (266)
T ss_pred eEEEEeCCCCCcCC---CCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCeEEEcCCcEEECCCCCEeh
Confidence 45667778888742 44699999999999999999999999999999999999999750
Q ss_pred -------------------------------EEe-cc------------------------------------Chh----
Q 001906 845 -------------------------------VMA-DV------------------------------------MPA---- 852 (997)
Q Consensus 845 -------------------------------~~~-~~------------------------------------~p~---- 852 (997)
.+. +. .++
T Consensus 80 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~~ 159 (266)
T PRK10976 80 SHNLDRDIASDLFGVVHDNPDIITNVYRDDEWFMNRHRPEEMRFFKEAVFKYQLYEPGLLEPDGVSKVFFTCDSHEKLLP 159 (266)
T ss_pred hhcCCHHHHHHHHHhhcccCCEEEEEEcCCeEEEcCCChHHHHHHHhcCCcceeechhhcccCCceEEEEEcCCHHHHHH
Confidence 000 00 000
Q ss_pred ------------------------------hHHHHHHHHhhc----CCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHH
Q 001906 853 ------------------------------GKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAI 898 (997)
Q Consensus 853 ------------------------------~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~ 898 (997)
.|...++.+.+. .+.|+++||+.||.+||+.|+.|+||+|+.+.+|
T Consensus 160 ~~~~l~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~vK 239 (266)
T PRK10976 160 LEQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLK 239 (266)
T ss_pred HHHHHHHHhCCcEEEEEeCCceEEEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHHH
Confidence 011111111111 2458999999999999999999999999999999
Q ss_pred HhcC--EEEecCChhhHHHHHH
Q 001906 899 EAAD--YVLMRNSLEDVIIAID 918 (997)
Q Consensus 899 ~~ad--~vl~~~~~~~l~~~i~ 918 (997)
+.|| .|+.+++-+++.++|+
T Consensus 240 ~~A~~~~v~~~n~edGVa~~l~ 261 (266)
T PRK10976 240 DLLPELEVIGSNADDAVPHYLR 261 (266)
T ss_pred HhCCCCeecccCchHHHHHHHH
Confidence 9988 7888889999998885
No 50
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.04 E-value=6.9e-10 Score=93.14 Aligned_cols=67 Identities=33% Similarity=0.554 Sum_probs=63.2
Q ss_pred ecccccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 001906 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (997)
Q Consensus 129 ~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~ 195 (997)
...+.++||+|.+|+.+++++|++++||.++++++..++..+.||+...+.++|++++++.||.+..
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeee
Confidence 4578999999999999999999999999999999999999999999889999999999999998753
No 51
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.03 E-value=2.1e-09 Score=116.92 Aligned_cols=134 Identities=26% Similarity=0.388 Sum_probs=106.9
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce------------------
Q 001906 783 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------ 844 (997)
Q Consensus 783 ~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~------------------ 844 (997)
.+.+++..||+++.- ...+.+.++++|+++++.|++++++||++...+..+.+++++..
T Consensus 3 ~kli~~DlDGTLl~~---~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~ 79 (264)
T COG0561 3 IKLLAFDLDGTLLDS---NKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNGGELLF 79 (264)
T ss_pred eeEEEEcCCCCccCC---CCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecCCcEEe
Confidence 345667777777652 33499999999999999999999999999999999999999860
Q ss_pred -------------------------EEe----------------------------------------------------
Q 001906 845 -------------------------VMA---------------------------------------------------- 847 (997)
Q Consensus 845 -------------------------~~~---------------------------------------------------- 847 (997)
++.
T Consensus 80 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (264)
T COG0561 80 QKPLSREDVEELLELLEDFQGIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELV 159 (264)
T ss_pred eecCCHHHHHHHHHHHHhccCceEEEEeccceeeccCCCcccccccccccccccccchhhcCcceEEEEecChHhHHHHH
Confidence 000
Q ss_pred ----------------------ccChh--hHHHHHHHHhhc-C---CEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHH
Q 001906 848 ----------------------DVMPA--GKADAVRSFQKD-G---SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIE 899 (997)
Q Consensus 848 ----------------------~~~p~--~K~~~v~~l~~~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~ 899 (997)
++.|. .|...++.+.+. | +.|+++||+.||.+||+.|+.||+|||+.+.+++
T Consensus 160 ~~l~~~~~~~~~~~~~s~~~~lei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~k~ 239 (264)
T COG0561 160 EALRKRFPDLGLTVSSSGPISLDITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNADEELKE 239 (264)
T ss_pred HHHhhhccccceEEEEcCCceEEEecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCCCHHHHh
Confidence 01111 344445444442 2 3599999999999999999999999999999999
Q ss_pred hcCEEEecCChhhHHHHHHH
Q 001906 900 AADYVLMRNSLEDVIIAIDL 919 (997)
Q Consensus 900 ~ad~vl~~~~~~~l~~~i~~ 919 (997)
.||++..+++-+++.++++.
T Consensus 240 ~A~~vt~~n~~~Gv~~~l~~ 259 (264)
T COG0561 240 LADYVTTSNDEDGVAEALEK 259 (264)
T ss_pred hCCcccCCccchHHHHHHHH
Confidence 99999899999999998874
No 52
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.03 E-value=1e-09 Score=115.32 Aligned_cols=130 Identities=24% Similarity=0.256 Sum_probs=104.4
Q ss_pred EEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--------------------
Q 001906 785 GILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-------------------- 844 (997)
Q Consensus 785 ~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~-------------------- 844 (997)
.+++-.||+++. -...+.+.+.++|++|++.|++++++||++...+..+++.+++..
T Consensus 3 ~v~~DlDGTLl~---~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~~~~~ 79 (215)
T TIGR01487 3 LVAIDIDGTLTE---PNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKEDIFLA 79 (215)
T ss_pred EEEEecCCCcCC---CCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCCcEEEe
Confidence 566677888875 234589999999999999999999999999999999999999851
Q ss_pred ---------------------------------------------------------EEeccCh--hhHHHHHHHHhhc-
Q 001906 845 ---------------------------------------------------------VMADVMP--AGKADAVRSFQKD- 864 (997)
Q Consensus 845 ---------------------------------------------------------~~~~~~p--~~K~~~v~~l~~~- 864 (997)
.+.++.| ..|...++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~ 159 (215)
T TIGR01487 80 NMEEEWFLDEEKKKRFPRDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKELL 159 (215)
T ss_pred cccchhhHHHhhhhhhhhhhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHHh
Confidence 0011112 2455555555442
Q ss_pred ---CCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHH
Q 001906 865 ---GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAI 917 (997)
Q Consensus 865 ---g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i 917 (997)
.+.++++||+.||.+|++.|+.|++|+++.+.+++.||++..+++-+++.++|
T Consensus 160 ~i~~~~~i~iGDs~ND~~ml~~ag~~vam~na~~~~k~~A~~v~~~~~~~Gv~~~l 215 (215)
T TIGR01487 160 GIKPEEVAAIGDSENDIDLFRVVGFKVAVANADDQLKEIADYVTSNPYGEGVVEVL 215 (215)
T ss_pred CCCHHHEEEECCCHHHHHHHHhCCCeEEcCCccHHHHHhCCEEcCCCCCchhhhhC
Confidence 34599999999999999999999999999999999999999888888887653
No 53
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.00 E-value=1.7e-09 Score=107.55 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=86.1
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhh--HHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCee
Q 001906 810 VVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAG--KADAVRSFQKDGSIVAMVGDGINDSPALAAADVG 887 (997)
Q Consensus 810 ~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~--K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vg 887 (997)
..|+.|++.|+++.++|+.+...+..+.+.+|+..+|....|+. -..+++.+....+.++++||+.||.+|++.|+++
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~ 120 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLA 120 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCe
Confidence 46899999999999999999999999999999999888764432 2334444443456799999999999999999999
Q ss_pred EEecCCcHHHHHhcCEEEecCChhh
Q 001906 888 MAIGAGTDIAIEAADYVLMRNSLED 912 (997)
Q Consensus 888 ia~~~~~~~~~~~ad~vl~~~~~~~ 912 (997)
++|+++.+.+++.|++++..++-.+
T Consensus 121 ~am~nA~~~lk~~A~~I~~~~~~~g 145 (169)
T TIGR02726 121 VAVGDAVADVKEAAAYVTTARGGHG 145 (169)
T ss_pred EECcCchHHHHHhCCEEcCCCCCCC
Confidence 9999999999999999986555443
No 54
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.93 E-value=4.6e-09 Score=111.27 Aligned_cols=128 Identities=23% Similarity=0.301 Sum_probs=100.0
Q ss_pred EEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-----------------------
Q 001906 788 VAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----------------------- 844 (997)
Q Consensus 788 va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~----------------------- 844 (997)
+-.||+++. -...+.+.+.++|++|++.|++++++||++...+..+++.+|+..
T Consensus 3 ~DlDGTLl~---~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~~~~~ 79 (225)
T TIGR01482 3 SDIDGTLTD---PNRAINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENGGEISYNEGMDDIFLAY 79 (225)
T ss_pred EeccCccCC---CCcccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecCcEEEeCCCCceEEecc
Confidence 344666653 123588999999999999999999999999999999999999640
Q ss_pred ----------------------------------------------------E-------EeccCh--hhHHHHHHHHhh
Q 001906 845 ----------------------------------------------------V-------MADVMP--AGKADAVRSFQK 863 (997)
Q Consensus 845 ----------------------------------------------------~-------~~~~~p--~~K~~~v~~l~~ 863 (997)
+ +.++.| ..|...++.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~ 159 (225)
T TIGR01482 80 LEEEWFLDIVIAKTFPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKE 159 (225)
T ss_pred cCHHHHHHHHHhcccchhhhccccccccceEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHH
Confidence 0 001112 245555555543
Q ss_pred c----CCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhh----HHHHHH
Q 001906 864 D----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLED----VIIAID 918 (997)
Q Consensus 864 ~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~----l~~~i~ 918 (997)
. .+.++++||+.||.+|++.|++|++|+|+.+.+++.||.|..+++-.+ +.+.++
T Consensus 160 ~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~~k~~A~~vt~~~~~~G~~~~v~~~l~ 222 (225)
T TIGR01482 160 KLGIKPGETLVCGDSENDIDLFEVPGFGVAVANAQPELKEWADYVTESPYGEGGAEAIGEILQ 222 (225)
T ss_pred HhCCCHHHEEEECCCHhhHHHHHhcCceEEcCChhHHHHHhcCeecCCCCCCcHHHHHHHHHH
Confidence 2 356999999999999999999999999999999999999998888888 666654
No 55
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.92 E-value=6.8e-09 Score=105.68 Aligned_cols=139 Identities=17% Similarity=0.251 Sum_probs=104.4
Q ss_pred cCCeEEEEEECCeEEEE-EEe---cCCCcHhH---HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhh
Q 001906 781 SARTGILVAYDDNLIGV-MGI---ADPVKREA---AVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAG 853 (997)
Q Consensus 781 ~g~~~i~va~~~~~lG~-i~~---~d~~~~~~---~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~ 853 (997)
.+.+.+.+..|++++.- +.+ ...+++-. ...++.|+++|+++.++||++...+..+++++|+..+|.. .++
T Consensus 19 ~~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g--~~~ 96 (183)
T PRK09484 19 ENIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQG--QSN 96 (183)
T ss_pred hCceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeecC--CCc
Confidence 46788888888888732 111 11122222 2689999999999999999999999999999999988874 345
Q ss_pred HHHHHHHHhh----cCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCC----hhhHHHHHHHHH
Q 001906 854 KADAVRSFQK----DGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNS----LEDVIIAIDLSR 921 (997)
Q Consensus 854 K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~----~~~l~~~i~~~r 921 (997)
|...++.+.+ ..+.++||||+.||.+|++.|+++++++++.+..+..||+++..+. +..+.+.+...|
T Consensus 97 k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~v~~~~~~~~~~a~~v~~~~~g~g~~~el~~~i~~~~ 172 (183)
T PRK09484 97 KLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVAVADAHPLLLPRADYVTRIAGGRGAVREVCDLLLLAQ 172 (183)
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEecCChhHHHHHhCCEEecCCCCCCHHHHHHHHHHHhc
Confidence 6665555533 3457999999999999999999999998888888889999996433 455555554444
No 56
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.90 E-value=1.6e-08 Score=110.52 Aligned_cols=132 Identities=20% Similarity=0.265 Sum_probs=101.3
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-------------------
Q 001906 784 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 844 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~------------------- 844 (997)
+.+++-.||+++. =...+.+.++++|++|+++|++++++||++...+..+.+++++..
T Consensus 4 kli~~DlDGTLl~---~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~d~~~~~~l 80 (272)
T PRK10530 4 RVIALDLDGTLLT---PKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYQAKKVL 80 (272)
T ss_pred cEEEEeCCCceEC---CCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCCEEEcCCcEEEecCCCEEE
Confidence 5677778998884 234689999999999999999999999999999999999998750
Q ss_pred -------------------------------EEecc---------------C----------------------------
Q 001906 845 -------------------------------VMADV---------------M---------------------------- 850 (997)
Q Consensus 845 -------------------------------~~~~~---------------~---------------------------- 850 (997)
++..- .
T Consensus 81 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (272)
T PRK10530 81 EADPLPVQQALQVIEMLDEHQIHGLMYVDDAMLYEHPTGHVIRTLNWAQTLPPEQRPTFTQVDSLAQAARQVNAIWKFAL 160 (272)
T ss_pred EecCCCHHHHHHHHHHHHhCCcEEEEEcCCceEecCchHHHHHHhhhhhccchhcccceEEcccHHHHHhhcCCcEEEEE
Confidence 00000 0
Q ss_pred --hh-hH-HHHHHHH--------------------------------hh----cCCEEEEEcCCcCCHHHHhcCCeeEEe
Q 001906 851 --PA-GK-ADAVRSF--------------------------------QK----DGSIVAMVGDGINDSPALAAADVGMAI 890 (997)
Q Consensus 851 --p~-~K-~~~v~~l--------------------------------~~----~g~~v~~vGDg~nD~~al~~A~vgia~ 890 (997)
++ ++ ..+.+.+ .+ ..+.++++||+.||.+|++.|++|++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~~vam 240 (272)
T PRK10530 161 THEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGLGVAM 240 (272)
T ss_pred ecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCceEEe
Confidence 00 00 0011111 10 014589999999999999999999999
Q ss_pred cCCcHHHHHhcCEEEecCChhhHHHHHH
Q 001906 891 GAGTDIAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 891 ~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
|++.+.+++.||+++.+++-+++.++|+
T Consensus 241 gna~~~lk~~Ad~v~~~n~~dGv~~~l~ 268 (272)
T PRK10530 241 GNADDAVKARADLVIGDNTTPSIAEFIY 268 (272)
T ss_pred cCchHHHHHhCCEEEecCCCCcHHHHHH
Confidence 9999999999999999999999998886
No 57
>PLN02887 hydrolase family protein
Probab=98.90 E-value=8.2e-09 Score=121.61 Aligned_cols=134 Identities=20% Similarity=0.272 Sum_probs=103.0
Q ss_pred CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc------------------
Q 001906 782 ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ------------------ 843 (997)
Q Consensus 782 g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~------------------ 843 (997)
..+.+++-.||+++.- ...+.+.++++|++|+++|++++++||++...+..+.+++++.
T Consensus 307 ~iKLIa~DLDGTLLn~---d~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~~~~~~I~~~~p~I~~NGA 383 (580)
T PLN02887 307 KFSYIFCDMDGTLLNS---KSQISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLAGKDGIISESSPGVFLQGL 383 (580)
T ss_pred CccEEEEeCCCCCCCC---CCccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcccccceEeecccEEeecCe
Confidence 4667888889998852 4469999999999999999999999999999999999988641
Q ss_pred ----------------------------------------eEEec-c---------------------------------
Q 001906 844 ----------------------------------------DVMAD-V--------------------------------- 849 (997)
Q Consensus 844 ----------------------------------------~~~~~-~--------------------------------- 849 (997)
..+.. -
T Consensus 384 ~I~d~~g~~I~~~~L~~e~v~eIi~~~~~~~i~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~i~K 463 (580)
T PLN02887 384 LVYGRQGREIYRSNLDQEVCREACLYSLEHKIPLIAFSQDRCLTLFDHPLVDSLHTIYHEPKAEIMSSVDQLLAAADIQK 463 (580)
T ss_pred EEEECCCcEEEEEeCCHHHHHHHHHHHHHcCCeEEEEECCeEEEecCchHHHHHHHhhccccccccCCHHHhhcccCeeE
Confidence 01100 0
Q ss_pred -----ChhhH-HHHHHHHhh--------------------------------------cCCEEEEEcCCcCCHHHHhcCC
Q 001906 850 -----MPAGK-ADAVRSFQK--------------------------------------DGSIVAMVGDGINDSPALAAAD 885 (997)
Q Consensus 850 -----~p~~K-~~~v~~l~~--------------------------------------~g~~v~~vGDg~nD~~al~~A~ 885 (997)
.++.. ..+.+.+.. ..+.|+++|||.||.+||+.|+
T Consensus 464 i~~~~~~e~~~~~l~~~l~~~~~~~~~v~~S~~~~lEI~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG 543 (580)
T PLN02887 464 VIFLDTAEGVSSVLRPYWSEATGDRANVVQAQPDMLEIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLAS 543 (580)
T ss_pred EEEEcChHHHHHHHHHHHHHHhcCcEEEEEecCcEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCC
Confidence 00000 001111111 0135899999999999999999
Q ss_pred eeEEecCCcHHHHHhcCEEEecCChhhHHHHHH
Q 001906 886 VGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 886 vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
.||||||+.+.+|+.||+|..+++-++|.++|+
T Consensus 544 ~gVAMgNA~eeVK~~Ad~VT~sNdEDGVA~aLe 576 (580)
T PLN02887 544 LGVALSNGAEKTKAVADVIGVSNDEDGVADAIY 576 (580)
T ss_pred CEEEeCCCCHHHHHhCCEEeCCCCcCHHHHHHH
Confidence 999999999999999999999999999998886
No 58
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.89 E-value=6.3e-09 Score=109.77 Aligned_cols=113 Identities=23% Similarity=0.337 Sum_probs=95.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec-----------------cChhhHHHHHHHHhhc-
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----------------VMPAGKADAVRSFQKD- 864 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~- 864 (997)
+++|++.+.++.|+++|++++++||.....+..+.+.+|+..+++. ..++.|..+++.+.++
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 164 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKE 164 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHc
Confidence 5899999999999999999999999999999999999999877742 1133477777765544
Q ss_pred ---CCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHH
Q 001906 865 ---GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIA 916 (997)
Q Consensus 865 ---g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~ 916 (997)
.+.++|+||+.+|.+|++.|+++++++ +.+..++.||+++.++++..+..+
T Consensus 165 ~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~-~~~~~~~~a~~~i~~~~~~~~~~~ 218 (219)
T TIGR00338 165 GISPENTVAVGDGANDLSMIKAAGLGIAFN-AKPKLQQKADICINKKDLTDILPL 218 (219)
T ss_pred CCCHHHEEEEECCHHHHHHHHhCCCeEEeC-CCHHHHHhchhccCCCCHHHHHhh
Confidence 346999999999999999999999995 567888999999999998877654
No 59
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.88 E-value=7.2e-09 Score=111.65 Aligned_cols=126 Identities=25% Similarity=0.404 Sum_probs=100.9
Q ss_pred EECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce------------------------
Q 001906 789 AYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------------ 844 (997)
Q Consensus 789 a~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~------------------------ 844 (997)
-.||+++. -...+.+.+.++|++|+++|+++++.||++...+..+.+++++..
T Consensus 4 DlDGTLl~---~~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~~~~i~ 80 (254)
T PF08282_consen 4 DLDGTLLN---SDGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILYEKPID 80 (254)
T ss_dssp ECCTTTCS---TTSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEEEESB-
T ss_pred EECCceec---CCCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccchhhhcccccceeeecccccchhhhee
Confidence 34555433 355688999999999999999999999999999999999999750
Q ss_pred --------------------------------------------------------------------------------
Q 001906 845 -------------------------------------------------------------------------------- 844 (997)
Q Consensus 845 -------------------------------------------------------------------------------- 844 (997)
T Consensus 81 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~l~~~l 160 (254)
T PF08282_consen 81 SDDVKKILKYLKEHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSEDDLEDEEIFKILFFPDPEDLEQLREEL 160 (254)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHHHHHCSSESEEEEESCHHHHHHHHHHH
T ss_pred ccchhheeehhhhcccccccccceeeecccccccchhhhhhcccccccccccccccccccceeeeccccchhhhhhhhhh
Confidence
Q ss_pred ---------------EEeccCh--hhHHHHHHHHhh----cCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCE
Q 001906 845 ---------------VMADVMP--AGKADAVRSFQK----DGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADY 903 (997)
Q Consensus 845 ---------------~~~~~~p--~~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~ 903 (997)
.+-+++| ..|...++.+.+ ..+.++++||+.||.+||+.|+.|++|+++++..++.||.
T Consensus 161 ~~~~~~~~~~~~~~~~~lei~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~~k~~a~~ 240 (254)
T PF08282_consen 161 KKKFPNLIDVVRSSPYFLEITPKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNATPELKKAADY 240 (254)
T ss_dssp HHHHTTTEEEEEEETTEEEEEETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSE
T ss_pred ccccCcceeEEEecccceEEeeCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCCCHHHHHhCCE
Confidence 1112223 347666666654 3467999999999999999999999999999999999999
Q ss_pred EEecCChhhHHHHH
Q 001906 904 VLMRNSLEDVIIAI 917 (997)
Q Consensus 904 vl~~~~~~~l~~~i 917 (997)
++...+-.++.++|
T Consensus 241 i~~~~~~~gv~~~i 254 (254)
T PF08282_consen 241 ITPSNNDDGVAKAI 254 (254)
T ss_dssp EESSGTCTHHHHHH
T ss_pred EecCCCCChHHHhC
Confidence 99877668888765
No 60
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.80 E-value=1.9e-08 Score=104.18 Aligned_cols=103 Identities=27% Similarity=0.342 Sum_probs=84.5
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec-----------------cChhhHHHHHHHHhhc
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----------------VMPAGKADAVRSFQKD 864 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~ 864 (997)
.+++|++.+.++.++++|.+++++||-...-+..+++.+|++.+++. +..+.|...++.+.++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999843321 2346788888666653
Q ss_pred -CC---EEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEE
Q 001906 865 -GS---IVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVL 905 (997)
Q Consensus 865 -g~---~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl 905 (997)
|. .+.++|||.||.|||+.|+.++++. .....+..|+...
T Consensus 156 ~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n-~~~~l~~~a~~~~ 199 (212)
T COG0560 156 LGIPLEETVAYGDSANDLPMLEAAGLPIAVN-PKPKLRALADVRI 199 (212)
T ss_pred cCCCHHHeEEEcCchhhHHHHHhCCCCeEeC-cCHHHHHHHHHhc
Confidence 43 5999999999999999999999995 4444555666554
No 61
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.74 E-value=4.2e-08 Score=106.16 Aligned_cols=128 Identities=25% Similarity=0.435 Sum_probs=96.7
Q ss_pred EEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----------------------
Q 001906 787 LVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD---------------------- 844 (997)
Q Consensus 787 ~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~---------------------- 844 (997)
++-.||+++.- ...+.+++.++|++|+++|++++++||++...+..+.+++|+..
T Consensus 3 ~~DlDGTLl~~---~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~~~~i~~~~ 79 (256)
T TIGR00099 3 FIDLDGTLLND---DHTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDTPFITANGAAVIDDQGEILYKKP 79 (256)
T ss_pred EEeCCCCCCCC---CCccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEECCCCCEEeecC
Confidence 44567777742 34688999999999999999999999999999999999998750
Q ss_pred ---------------------------EEec-------------------------------------------------
Q 001906 845 ---------------------------VMAD------------------------------------------------- 848 (997)
Q Consensus 845 ---------------------------~~~~------------------------------------------------- 848 (997)
++..
T Consensus 80 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (256)
T TIGR00099 80 LDLDLVEEILNFLKKHGLDVILYGDDSIYASKNDPEYFTIFKKFLGEPKLEVVDIQYLPDDILKILLLFLDPEDLDLLIE 159 (256)
T ss_pred CCHHHHHHHHHHHHHcCcEEEEEeCCeEEecCCCcchhHHHHHhccCCcceeccchhhhcccceEEEEECCHHHHHHHHH
Confidence 0000
Q ss_pred ----------------------cChh--hHHHHHHHHhhc----CCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHh
Q 001906 849 ----------------------VMPA--GKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEA 900 (997)
Q Consensus 849 ----------------------~~p~--~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ 900 (997)
+.|. .|...++.+.+. .+.++++||+.||.+|++.|+.|++|+++.+.+++.
T Consensus 160 ~~~~~~~~~~~~~~~s~~~~leI~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na~~~~k~~ 239 (256)
T TIGR00099 160 ALNKLELEENVSVVSSGPYSIEITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNADEELKAL 239 (256)
T ss_pred HhhhhhhcCCEEEEEecCceEEecCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCchHHHHHh
Confidence 0000 111122222211 245899999999999999999999999999999999
Q ss_pred cCEEEecCChhhHHHHH
Q 001906 901 ADYVLMRNSLEDVIIAI 917 (997)
Q Consensus 901 ad~vl~~~~~~~l~~~i 917 (997)
||+++.+++-+++.++|
T Consensus 240 a~~~~~~n~~dGV~~~l 256 (256)
T TIGR00099 240 ADYVTDSNNEDGVALAL 256 (256)
T ss_pred CCEEecCCCCcchhhhC
Confidence 99999988888887653
No 62
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.72 E-value=5.4e-08 Score=101.48 Aligned_cols=113 Identities=22% Similarity=0.380 Sum_probs=92.3
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec---------------cChhhHHHHHHHHhhcCCE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD---------------VMPAGKADAVRSFQKDGSI 867 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~---------------~~p~~K~~~v~~l~~~g~~ 867 (997)
++.|++.+.++.|+++ ++++++|+.....+..+.+++|+..+|+. -.|+.|...++.++..+..
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~~ 146 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGYR 146 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCCe
Confidence 4679999999999999 99999999999999999999998755431 1467888899999888999
Q ss_pred EEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCE-EEecCChhhHHHHHH
Q 001906 868 VAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADY-VLMRNSLEDVIIAID 918 (997)
Q Consensus 868 v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~-vl~~~~~~~l~~~i~ 918 (997)
++|||||.||.+|.++|++|+.++.........++. ++ +++..+.+.+.
T Consensus 147 ~v~iGDs~~D~~~~~aa~~~v~~~~~~~~~~~~~~~~~~--~~~~el~~~l~ 196 (205)
T PRK13582 147 VIAAGDSYNDTTMLGEADAGILFRPPANVIAEFPQFPAV--HTYDELLAAID 196 (205)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEECCCHHHHHhCCccccc--CCHHHHHHHHH
Confidence 999999999999999999999987654444445555 44 66777766554
No 63
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.62 E-value=2.9e-07 Score=100.37 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=50.6
Q ss_pred CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 001906 782 ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 843 (997)
Q Consensus 782 g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~ 843 (997)
..+.++.-.||+++.- ...+.+.++++|++|+++|++++++||++...+..+++++|++
T Consensus 6 ~~~lI~~DlDGTLL~~---~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 6 DPLLIFTDLDGTLLDS---HTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CCeEEEEeCccCCcCC---CCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 4567777889998751 3456788999999999999999999999999999999999874
No 64
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.53 E-value=3.3e-07 Score=95.17 Aligned_cols=100 Identities=25% Similarity=0.353 Sum_probs=81.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec-----------------cChhhHHHHHHHHhhc-
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----------------VMPAGKADAVRSFQKD- 864 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~- 864 (997)
+++|++.+.++.|+++|++++++|+.....+..+++.+|+..+++. ..|..|.+.++.+.++
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~~ 159 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKREL 159 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999876542 1234566666665443
Q ss_pred ---CCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcC
Q 001906 865 ---GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAAD 902 (997)
Q Consensus 865 ---g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad 902 (997)
.+.++|+||+.||.+|++.||++++++......+.++|
T Consensus 160 ~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~~~~~a~~ 200 (201)
T TIGR01491 160 NPSLTETVAVGDSKNDLPMFEVADISISLGDEGHADYLAKD 200 (201)
T ss_pred CCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCccchhhccc
Confidence 45699999999999999999999999765544444444
No 65
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.52 E-value=7.4e-07 Score=97.27 Aligned_cols=133 Identities=20% Similarity=0.228 Sum_probs=98.8
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce---------EEe------
Q 001906 783 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD---------VMA------ 847 (997)
Q Consensus 783 ~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~---------~~~------ 847 (997)
.+.+++-.||+++.- .+.+.+.++++|++|+++|++++++||++...+..+.+++|+.. ++.
T Consensus 4 ~kli~~DlDGTLl~~---~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~~i~~nGa~i~~~~~~~~ 80 (273)
T PRK00192 4 KLLVFTDLDGTLLDH---HTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDPFIVENGAAIYIPKNYFP 80 (273)
T ss_pred ceEEEEcCcccCcCC---CCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCEEEEcCcEEEecccccc
Confidence 346667778888752 45677889999999999999999999999999999999999751 211
Q ss_pred -----------c------cChh----------------------------------------------------------
Q 001906 848 -----------D------VMPA---------------------------------------------------------- 852 (997)
Q Consensus 848 -----------~------~~p~---------------------------------------------------------- 852 (997)
+ ++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (273)
T PRK00192 81 FQPDGERLKGDYWVIELGPPYEELREILDEISDELGYPLKGFGDLSAEEVAELTGLSGESARLAKDREFSEPFLWNGSEA 160 (273)
T ss_pred cCCccccccCCceEEEcCCCHHHHHHHHHHHHHHhCCCeeehhhCCHHHHHHHhCcCHHHHHHHHhcccCCceeecCchH
Confidence 0 0000
Q ss_pred -----------------------------hHHHHHHHHh----hcC-CEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHH
Q 001906 853 -----------------------------GKADAVRSFQ----KDG-SIVAMVGDGINDSPALAAADVGMAIGAGTDIAI 898 (997)
Q Consensus 853 -----------------------------~K~~~v~~l~----~~g-~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~ 898 (997)
.|...++.+. ... +.|+++||+.||.+|++.|++|++|+|+.+.++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA~~~~k 240 (273)
T PRK00192 161 AKERFEEALKRLGLKVTRGGRFLHLLGGGDKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGPDGPNP 240 (273)
T ss_pred HHHHHHHHHHHcCCEEEECCeEEEEeCCCCHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCCCCCCc
Confidence 0000111111 124 789999999999999999999999999999988
Q ss_pred ----Hhc-CEEE--ecCChhhHHHHHH
Q 001906 899 ----EAA-DYVL--MRNSLEDVIIAID 918 (997)
Q Consensus 899 ----~~a-d~vl--~~~~~~~l~~~i~ 918 (997)
..| +.+. ..++-+++.+.++
T Consensus 241 ~~~~~~a~~~v~~~~~~~~~Gv~~~l~ 267 (273)
T PRK00192 241 PLLPGIADGEFILASAPGPEGWAEAIN 267 (273)
T ss_pred ccCccccCCceEEecCCCcHHHHHHHH
Confidence 666 6777 4666788888775
No 66
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.51 E-value=4.3e-07 Score=95.63 Aligned_cols=116 Identities=23% Similarity=0.306 Sum_probs=92.5
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-----------ChhhHHHHHHHHhhcCCEEE
Q 001906 801 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----------MPAGKADAVRSFQKDGSIVA 869 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-----------~p~~K~~~v~~l~~~g~~v~ 869 (997)
...+-|++++++..|+++|++..++|+++...+..+.+.+|+..+|..+ .|......++.+....+.++
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 4568899999999999999999999999999999999999998766432 12333345555555545799
Q ss_pred EEcCCcCCHHHHhcCC---eeEEecC--CcHHHHHhcCEEEecCChhhHHHHHH
Q 001906 870 MVGDGINDSPALAAAD---VGMAIGA--GTDIAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 870 ~vGDg~nD~~al~~A~---vgia~~~--~~~~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
||||..+|+.|.++|+ +|+.+|. ........+|+++ +++..+...+.
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi--~~~~el~~~l~ 218 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVI--DSLAELLALLA 218 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEE--CCHHHHHHHHh
Confidence 9999999999999999 7788874 3455566699999 77888776654
No 67
>PLN02954 phosphoserine phosphatase
Probab=98.48 E-value=1.1e-06 Score=92.90 Aligned_cols=112 Identities=26% Similarity=0.384 Sum_probs=86.9
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--eEEec-------------------cChhhHHHHHHHH
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--DVMAD-------------------VMPAGKADAVRSF 861 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~--~~~~~-------------------~~p~~K~~~v~~l 861 (997)
.+.|++.++++.|+++|+++.++||.....+..+++.+|+. ++|+. .....|.+.++.+
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~ 163 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHI 163 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHH
Confidence 47899999999999999999999999999999999999996 45531 0123588888877
Q ss_pred hhc--CCEEEEEcCCcCCHHHHhc--CCeeEEecCC--cHHHHHhcCEEEecCChhhHHHH
Q 001906 862 QKD--GSIVAMVGDGINDSPALAA--ADVGMAIGAG--TDIAIEAADYVLMRNSLEDVIIA 916 (997)
Q Consensus 862 ~~~--g~~v~~vGDg~nD~~al~~--A~vgia~~~~--~~~~~~~ad~vl~~~~~~~l~~~ 916 (997)
.++ .+.++|+||+.||..|.++ +++.++.|.. .+.....+|+++ +++..+...
T Consensus 164 ~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~el~~~ 222 (224)
T PLN02954 164 KKKHGYKTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFV--TDFQDLIEV 222 (224)
T ss_pred HHHcCCCceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEE--CCHHHHHHh
Confidence 654 3579999999999999888 4566666632 233455689988 667776654
No 68
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.48 E-value=2e-07 Score=90.14 Aligned_cols=90 Identities=26% Similarity=0.406 Sum_probs=76.5
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--EEecc-------------------ChhhHHHHHHH
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMADV-------------------MPAGKADAVRS 860 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~--~~~~~-------------------~p~~K~~~v~~ 860 (997)
-.+.|++++.++.|+++|.+++++||.-...+..+|.+|||+. +|++. ....|.++++.
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~ 166 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIAL 166 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHH
Confidence 4578999999999999999999999999999999999999984 55542 13469999999
Q ss_pred Hhhc--CCEEEEEcCCcCCHHHHhcCCeeEEec
Q 001906 861 FQKD--GSIVAMVGDGINDSPALAAADVGMAIG 891 (997)
Q Consensus 861 l~~~--g~~v~~vGDg~nD~~al~~A~vgia~~ 891 (997)
+++. .+.++|||||.||.+|+..|+.=|+.|
T Consensus 167 lrk~~~~~~~~mvGDGatDlea~~pa~afi~~~ 199 (227)
T KOG1615|consen 167 LRKNYNYKTIVMVGDGATDLEAMPPADAFIGFG 199 (227)
T ss_pred HHhCCChheeEEecCCccccccCCchhhhhccC
Confidence 9874 357999999999999999977666664
No 69
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.46 E-value=9.8e-07 Score=95.39 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=46.5
Q ss_pred CEEEEEcCCcCCHHHHhcCCeeEEecCCc---HHHHHh--c-CEEEecCChhhHHHHHH
Q 001906 866 SIVAMVGDGINDSPALAAADVGMAIGAGT---DIAIEA--A-DYVLMRNSLEDVIIAID 918 (997)
Q Consensus 866 ~~v~~vGDg~nD~~al~~A~vgia~~~~~---~~~~~~--a-d~vl~~~~~~~l~~~i~ 918 (997)
+.++++||+.||.+|++.|+.||+|+|+. +..++. | ++|..+++-+++.++++
T Consensus 195 ~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~~~lk~~~~a~~~vt~~~~~dGva~~l~ 253 (256)
T TIGR01486 195 IKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPNVSLKPGDPGSFLLTPAPGPEGWREALE 253 (256)
T ss_pred ceEEEEcCCHhhHHHHHHCCEEEEeCCCCCCccccCccCCCcEEEcCCCCcHHHHHHHH
Confidence 46999999999999999999999999987 467776 4 58888899999998886
No 70
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.37 E-value=1.8e-06 Score=89.99 Aligned_cols=114 Identities=21% Similarity=0.307 Sum_probs=86.3
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-------ChhhHHH----HHHHHhhcCCEEEE
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGKAD----AVRSFQKDGSIVAM 870 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~----~v~~l~~~g~~v~~ 870 (997)
-++.|++.+++++|+++|+++.++||.....+..+.+.+|+..+|..+ .++.+.+ +++.++-..+.++|
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~ 153 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVM 153 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEE
Confidence 377899999999999999999999999999999999999997544432 1223333 34444445678999
Q ss_pred EcCCcCCHHHHhcCCee---EEecCC--cHHHHHhcCEEEecCChhhHHHHH
Q 001906 871 VGDGINDSPALAAADVG---MAIGAG--TDIAIEAADYVLMRNSLEDVIIAI 917 (997)
Q Consensus 871 vGDg~nD~~al~~A~vg---ia~~~~--~~~~~~~ad~vl~~~~~~~l~~~i 917 (997)
|||+.+|+.+.+++++. +.+|.+ .+.....+|+++ +++..+..++
T Consensus 154 igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~--~~~~~l~~~~ 203 (205)
T TIGR01454 154 VGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLL--RKPQSLLALC 203 (205)
T ss_pred EcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeee--CCHHHHHHHh
Confidence 99999999999999954 455643 334556789988 7777776554
No 71
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.35 E-value=2.1e-06 Score=91.65 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=53.4
Q ss_pred HHHHHHHHhhc----CCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcC----EEEecCChhhHHHHHH
Q 001906 854 KADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAAD----YVLMRNSLEDVIIAID 918 (997)
Q Consensus 854 K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad----~vl~~~~~~~l~~~i~ 918 (997)
|...++.+.++ .+.++++||+.||.+|++.++.||+|+++.+.+++.|| ++...++-.++.++|+
T Consensus 160 K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~k~~a~~~~~~v~~~~~~~Gv~~~i~ 232 (236)
T TIGR02471 160 KGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNHDPELEGLRHQQRIYFANNPHAFGILEGIN 232 (236)
T ss_pred hHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHHHHhhcCCcEEEcCCCChhHHHHHHH
Confidence 44445544432 23589999999999999999999999999999999999 7877778888988886
No 72
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.31 E-value=4.2e-06 Score=87.78 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=86.3
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC-ceEEec-c----------Ch------------hhHHHH
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI-QDVMAD-V----------MP------------AGKADA 857 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi-~~~~~~-~----------~p------------~~K~~~ 857 (997)
.+++|++.+.++.|++.|++++++||.....+..+.+.++. ..+++. + .| ..|..+
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 46899999999999999999999999999999999988753 334331 1 12 248899
Q ss_pred HHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHH
Q 001906 858 VRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 858 v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
++.++..++.++|+|||.||..|++.||+.++-+.-.+...+.---...=+++.++...++
T Consensus 149 l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~~ar~~l~~~~~~~~~~~~~~~~f~di~~~l~ 209 (214)
T TIGR03333 149 IRKLSEPNDYHIVIGDSVTDVEAAKQSDLCFARDYLLNECEELGLNHAPFQDFYDVRKELE 209 (214)
T ss_pred HHHHhhcCCcEEEEeCCHHHHHHHHhCCeeEehHHHHHHHHHcCCCccCcCCHHHHHHHHH
Confidence 9999888888999999999999999999987765322212211111222266777776664
No 73
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.28 E-value=3.3e-06 Score=89.45 Aligned_cols=117 Identities=22% Similarity=0.285 Sum_probs=89.8
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---------Chhh--HHHHHHHHhhcCCEEEE
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAG--KADAVRSFQKDGSIVAM 870 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~---------~p~~--K~~~v~~l~~~g~~v~~ 870 (997)
..+.|++.+.++.|++.|++++++||........+.+.+|+...|..+ .|+. -..+++.++...+.+++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 171 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLF 171 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEE
Confidence 568899999999999999999999999999999999999997654432 1211 13455555556678999
Q ss_pred EcCCcCCHHHHhcCCe-eEEe--cC--CcHHHHHhcCEEEecCChhhHHHHHHHH
Q 001906 871 VGDGINDSPALAAADV-GMAI--GA--GTDIAIEAADYVLMRNSLEDVIIAIDLS 920 (997)
Q Consensus 871 vGDg~nD~~al~~A~v-gia~--~~--~~~~~~~~ad~vl~~~~~~~l~~~i~~~ 920 (997)
+||+.||+.+.+.|++ +|.+ |. ..+.....+|+++ +++..+...+..+
T Consensus 172 igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i--~~~~~l~~~l~~~ 224 (226)
T PRK13222 172 VGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVI--DHFAELLPLLGLA 224 (226)
T ss_pred ECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEE--CCHHHHHHHHHHh
Confidence 9999999999999997 3444 42 2344445688888 8899988887653
No 74
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.24 E-value=3.8e-06 Score=88.50 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=84.6
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--EEec---c--------C--h----------hhHHHH
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMAD---V--------M--P----------AGKADA 857 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~--~~~~---~--------~--p----------~~K~~~ 857 (997)
+++|++.+.++.|+++|+++.++|+.....+..+.+.+ +.. +++. . . | ..|..+
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 68999999999999999999999999999999999987 642 4432 1 1 1 248889
Q ss_pred HHHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEecCCcHHHHHh--cCEEEecCChhhHHHHHH
Q 001906 858 VRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEA--ADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 858 v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~--ad~vl~~~~~~~l~~~i~ 918 (997)
++.++..+..++|||||.||+.|.++||+.++-+.-.+.+.+. +.+.+ +++..+.+.++
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a~~~l~~~~~~~~~~~~~~--~~f~ei~~~l~ 213 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFARDFLITKCEELGIPYTPF--ETFHDVQTELK 213 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCcceeHHHHHHHHHHcCCCcccc--CCHHHHHHHHH
Confidence 9998888888999999999999999999977743111222222 33333 66777766653
No 75
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.24 E-value=2.9e-06 Score=87.04 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=74.9
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC---------------------------hhhH
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM---------------------------PAGK 854 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~---------------------------p~~K 854 (997)
-++.+++.+.++.|++.|++++++|+.+......+.+.+|+.++|..+. ...|
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 4788999999999999999999999999999999999999875332211 1249
Q ss_pred HHHHHHHhhc-CCEEEEEcCCcCCHHHHhcCCeeEE
Q 001906 855 ADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMA 889 (997)
Q Consensus 855 ~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia 889 (997)
.++++.++.+ .+.++|+|||.||..|.++||+-.|
T Consensus 151 ~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~a 186 (188)
T TIGR01489 151 GKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVFA 186 (188)
T ss_pred HHHHHHHHhhcCceEEEECCCcchhchHhcCCcccc
Confidence 9999999887 8899999999999999999987554
No 76
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.21 E-value=8.6e-06 Score=87.61 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=97.4
Q ss_pred EEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce---------------------
Q 001906 786 ILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--------------------- 844 (997)
Q Consensus 786 i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~--------------------- 844 (997)
++.-.|++++..--=..+..|...+++++++++|+.++++||++....+.+.+++++..
T Consensus 4 i~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~~~~~~~ 83 (249)
T TIGR01485 4 LVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYGGAEVPD 83 (249)
T ss_pred EEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeCCCCcCC
Confidence 44455777773111145678999999999999999999999999999999999888640
Q ss_pred ----------------------------------------E----------------------------Ee-----ccCh
Q 001906 845 ----------------------------------------V----------------------------MA-----DVMP 851 (997)
Q Consensus 845 ----------------------------------------~----------------------------~~-----~~~p 851 (997)
+ ++ ++.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~~ 163 (249)
T TIGR01485 84 QHWAEYLSEKWQRDIVVAITDKFEELKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDILP 163 (249)
T ss_pred HHHHHHHhcccCHHHHHHHHhcCcccccCCccccCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEEe
Confidence 0 00 1112
Q ss_pred --hhHHHHHHHHhhc----CCEEEEEcCCcCCHHHHhc-CCeeEEecCCcHHHHHhcC-------EEEecCChhhHHHHH
Q 001906 852 --AGKADAVRSFQKD----GSIVAMVGDGINDSPALAA-ADVGMAIGAGTDIAIEAAD-------YVLMRNSLEDVIIAI 917 (997)
Q Consensus 852 --~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~-A~vgia~~~~~~~~~~~ad-------~vl~~~~~~~l~~~i 917 (997)
..|...++.+.+. .+.++++||+.||.+|++. ++.|++|+|+.+..++.++ ++.....-+++.+++
T Consensus 164 ~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~k~~~~~~~~~~~~~~~~~~~~Gi~e~l 243 (249)
T TIGR01485 164 QGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEELLQWYDENAKDKIYHASERCAGGIIEAI 243 (249)
T ss_pred CCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCHHHHHHHHHhcccCcEEEecCCCcHHHHHHH
Confidence 2355555555432 3579999999999999998 6799999999998887654 555555667777776
Q ss_pred H
Q 001906 918 D 918 (997)
Q Consensus 918 ~ 918 (997)
+
T Consensus 244 ~ 244 (249)
T TIGR01485 244 A 244 (249)
T ss_pred H
Confidence 5
No 77
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.20 E-value=6e-06 Score=86.66 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=85.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC-------hhhHH----HHHHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM-------PAGKA----DAVRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~-------p~~K~----~~v~~l~~~g~~v~~v 871 (997)
++.|++.++++.|+++|+++.++|+.....+..+.+.+|+..+|..+. ++.+. .+++.+....+.++||
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMV 161 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEE
Confidence 477999999999999999999999999999999999999987654331 11222 3444444445779999
Q ss_pred cCCcCCHHHHhcCCe---eEEecCC-cH-HHHHhcCEEEecCChhhHHHHH
Q 001906 872 GDGINDSPALAAADV---GMAIGAG-TD-IAIEAADYVLMRNSLEDVIIAI 917 (997)
Q Consensus 872 GDg~nD~~al~~A~v---gia~~~~-~~-~~~~~ad~vl~~~~~~~l~~~i 917 (997)
||+.+|+.|.++|++ ++..|.. .+ .....+|+++ +++..+.+.+
T Consensus 162 GDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i--~~~~~l~~~i 210 (214)
T PRK13288 162 GDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFML--DKMSDLLAIV 210 (214)
T ss_pred CCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEE--CCHHHHHHHH
Confidence 999999999999996 4555532 22 2334588887 7788887765
No 78
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.16 E-value=7.2e-06 Score=85.20 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=76.9
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec------------------cChhhHHHHHHHHh
Q 001906 801 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD------------------VMPAGKADAVRSFQ 862 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~------------------~~p~~K~~~v~~l~ 862 (997)
...+++++.+.++.++++|++++++|+.....+..+++.+|++.+++. ..+++|...++.+.
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999876543 12356777776654
Q ss_pred h-cC---CEEEEEcCCcCCHHHHhcCCeeEEecC
Q 001906 863 K-DG---SIVAMVGDGINDSPALAAADVGMAIGA 892 (997)
Q Consensus 863 ~-~g---~~v~~vGDg~nD~~al~~A~vgia~~~ 892 (997)
+ .+ +.++++||+.+|.+|++.|+.++++..
T Consensus 165 ~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~ 198 (202)
T TIGR01490 165 AEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNP 198 (202)
T ss_pred HHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCC
Confidence 3 33 368999999999999999999998853
No 79
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.16 E-value=3.4e-06 Score=85.54 Aligned_cols=81 Identities=27% Similarity=0.383 Sum_probs=68.8
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec-------------------cChhhHHHHHHHHhhc
Q 001906 804 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-------------------VMPAGKADAVRSFQKD 864 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~-------------------~~p~~K~~~v~~l~~~ 864 (997)
++|++.+.++.++++|++++++||.....+..+++.+|+..+++. ..+..|...++.+.++
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~~ 153 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLEE 153 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999765431 2245788888887654
Q ss_pred ----CCEEEEEcCCcCCHHHHhcC
Q 001906 865 ----GSIVAMVGDGINDSPALAAA 884 (997)
Q Consensus 865 ----g~~v~~vGDg~nD~~al~~A 884 (997)
.+.++++|||.||.+|++.|
T Consensus 154 ~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 154 SKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred hCCCHHHEEEEeCCHHHHHHHhcC
Confidence 45699999999999999875
No 80
>PRK06769 hypothetical protein; Validated
Probab=98.12 E-value=8.2e-06 Score=82.25 Aligned_cols=133 Identities=18% Similarity=0.156 Sum_probs=90.2
Q ss_pred CCeEEEEEECCeEEEEEEecC----CCcHhHHHHHHHHHHCCCeEEEEcCCCHH--------HHHHHHHHcCCceEEecc
Q 001906 782 ARTGILVAYDDNLIGVMGIAD----PVKREAAVVVEGLLKMGVRPVMVTGDNWR--------TAHAVAREIGIQDVMADV 849 (997)
Q Consensus 782 g~~~i~va~~~~~lG~i~~~d----~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~--------~a~~ia~~~gi~~~~~~~ 849 (997)
|++++.+-.|+++.|.-.+.+ ++.|++++++++|++.|+++.++|+.+.. ......+.+|++.++...
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 82 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCP 82 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECc
Confidence 688999999999977744332 36799999999999999999999987641 234446678898876431
Q ss_pred C--------hhhH----HHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCee---EEecCCcHH--------HHHhcCEEEe
Q 001906 850 M--------PAGK----ADAVRSFQKDGSIVAMVGDGINDSPALAAADVG---MAIGAGTDI--------AIEAADYVLM 906 (997)
Q Consensus 850 ~--------p~~K----~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vg---ia~~~~~~~--------~~~~ad~vl~ 906 (997)
. .+.+ ..+++.+....+.++||||..+|+.+.++|++- +..|.+.+. ....+|.++
T Consensus 83 ~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~- 161 (173)
T PRK06769 83 HKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIA- 161 (173)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchh-
Confidence 1 1122 234444444457899999999999999999954 333433321 122356665
Q ss_pred cCChhhHHHH
Q 001906 907 RNSLEDVIIA 916 (997)
Q Consensus 907 ~~~~~~l~~~ 916 (997)
+++..+...
T Consensus 162 -~~~~el~~~ 170 (173)
T PRK06769 162 -ENFEDAVNW 170 (173)
T ss_pred -hCHHHHHHH
Confidence 556666554
No 81
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.11 E-value=1.5e-05 Score=86.33 Aligned_cols=130 Identities=18% Similarity=0.293 Sum_probs=94.7
Q ss_pred CeEEEEEECCeEEEEEEe--cCCCcHhHHHHHHHHHH-CCCeEEEEcCCCHHHHHHHHHHcCCce---------------
Q 001906 783 RTGILVAYDDNLIGVMGI--ADPVKREAAVVVEGLLK-MGVRPVMVTGDNWRTAHAVAREIGIQD--------------- 844 (997)
Q Consensus 783 ~~~i~va~~~~~lG~i~~--~d~~~~~~~~~i~~l~~-~gi~~~i~Tgd~~~~a~~ia~~~gi~~--------------- 844 (997)
.+.+++-+||+++....= .-.+.++++++|++|++ .|+.++++||++......+.+.+++.-
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~ 93 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKT 93 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccceEEEeCCCeeecCCCCe
Confidence 467888899998852111 12567899999999998 799999999999999998888776420
Q ss_pred ----------------------------------------------------------------------EEeccChh--
Q 001906 845 ----------------------------------------------------------------------VMADVMPA-- 852 (997)
Q Consensus 845 ----------------------------------------------------------------------~~~~~~p~-- 852 (997)
.+-++.|.
T Consensus 94 ~~~~l~~~~~~~i~~~l~~~~~~~pg~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~~~~~~~g~~~lEi~p~g~ 173 (266)
T PRK10187 94 HIVHLPDAIARDISVQLHTALAQLPGAELEAKGMAFALHYRQAPQHEDALLALAQRITQIWPQLALQPGKCVVEIKPRGT 173 (266)
T ss_pred eeccCChhHHHHHHHHHHHHhccCCCcEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCCceEEeCCCEEEEeeCCCC
Confidence 01111121
Q ss_pred hHHHHHHHHhhc----CCEEEEEcCCcCCHHHHhcC----CeeEEecCCcHHHHHhcCEEEecCChhhHHHHHH
Q 001906 853 GKADAVRSFQKD----GSIVAMVGDGINDSPALAAA----DVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 853 ~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A----~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
.|...++.+.+. ...++++||+.||.+||+.+ +.||+||++.+ .|++.+ ++..++...+.
T Consensus 174 ~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~~----~A~~~l--~~~~~v~~~L~ 241 (266)
T PRK10187 174 NKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGAT----QASWRL--AGVPDVWSWLE 241 (266)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCCC----cCeEeC--CCHHHHHHHHH
Confidence 354445544332 35799999999999999999 99999998753 577777 57777776665
No 82
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.11 E-value=7e-06 Score=84.44 Aligned_cols=77 Identities=30% Similarity=0.508 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--EEec-------------cChh-h--HHHHHHHH------
Q 001906 806 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMAD-------------VMPA-G--KADAVRSF------ 861 (997)
Q Consensus 806 ~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~--~~~~-------------~~p~-~--K~~~v~~l------ 861 (997)
+++.+.|+.++++|++++|+||++...+..+++.+|++. +++. +++. + |...++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 777799999999999999999999999999999999985 3322 2222 3 99999999
Q ss_pred hhcCCEEEEEcCCcCCHHHHh
Q 001906 862 QKDGSIVAMVGDGINDSPALA 882 (997)
Q Consensus 862 ~~~g~~v~~vGDg~nD~~al~ 882 (997)
+.....++++|||.||.+||+
T Consensus 172 ~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 172 DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp THTCCEEEEEESSGGGHHHHH
T ss_pred CCCCCeEEEEECCHHHHHHhC
Confidence 456789999999999999986
No 83
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.08 E-value=2e-05 Score=85.45 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=85.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---Ch-hhHHHHHH----HHhhcCCEEEEEcCC
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---MP-AGKADAVR----SFQKDGSIVAMVGDG 874 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~---~p-~~K~~~v~----~l~~~g~~v~~vGDg 874 (997)
++.|++.++++.|+++|+++.++|+.+...+..+.+.+|+.+.|..+ .+ ..|.+.+. .+....+.++||||+
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IGDs 221 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVGDE 221 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEECCC
Confidence 57899999999999999999999999999999999999998655433 11 12334333 333345679999999
Q ss_pred cCCHHHHhcCCee---EEecCCcH--HHHHhcCEEEecCChhhHHHHH
Q 001906 875 INDSPALAAADVG---MAIGAGTD--IAIEAADYVLMRNSLEDVIIAI 917 (997)
Q Consensus 875 ~nD~~al~~A~vg---ia~~~~~~--~~~~~ad~vl~~~~~~~l~~~i 917 (997)
.+|+.+.++|++- +..|.... .....+|+++ +++..+...+
T Consensus 222 ~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i--~~~~eL~~~~ 267 (273)
T PRK13225 222 TRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLL--ETPSDLLQAV 267 (273)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEE--CCHHHHHHHH
Confidence 9999999999954 44553332 2334589888 7788887765
No 84
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.08 E-value=9.8e-06 Score=84.96 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=82.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-----C--hhhHH----HHHHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----M--PAGKA----DAVRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-----~--p~~K~----~~v~~l~~~g~~v~~v 871 (997)
++.|++.++++.|+++|+++.++|+.+...+..+.+.+|+..+|..+ . ++.+. .+++.+....+.++||
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 164 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYV 164 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEe
Confidence 57899999999999999999999999999999999999987544322 1 12222 3344444445779999
Q ss_pred cCCcCCHHHHhcCCee---EEecCC--cHHHHHhcCEEEecCChhhHHHH
Q 001906 872 GDGINDSPALAAADVG---MAIGAG--TDIAIEAADYVLMRNSLEDVIIA 916 (997)
Q Consensus 872 GDg~nD~~al~~A~vg---ia~~~~--~~~~~~~ad~vl~~~~~~~l~~~ 916 (997)
||+.+|+.+.++|++. +..|.. .+.....+|+++ +++..+..+
T Consensus 165 gDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i--~~~~~l~~~ 212 (213)
T TIGR01449 165 GDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLY--DSLNELPPL 212 (213)
T ss_pred CCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEe--CCHHHHHhh
Confidence 9999999999999965 333432 223334688887 667776543
No 85
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.04 E-value=1.9e-05 Score=85.99 Aligned_cols=115 Identities=22% Similarity=0.237 Sum_probs=84.9
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-----Chhh--HHH----HHHHHhhcCCEEEE
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----MPAG--KAD----AVRSFQKDGSIVAM 870 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-----~p~~--K~~----~v~~l~~~g~~v~~ 870 (997)
.++.|++.++++.|+++|++++++||.+...+..+.+++|+..+|..+ .+.. +.+ +++.+.-..+.++|
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~ 179 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLF 179 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEE
Confidence 468899999999999999999999999999999999999987644321 2222 222 33333334578999
Q ss_pred EcCCcCCHHHHhcCCe---eEEecC--CcHHHHHhcCEEEecCChhhHHHHHH
Q 001906 871 VGDGINDSPALAAADV---GMAIGA--GTDIAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 871 vGDg~nD~~al~~A~v---gia~~~--~~~~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
|||+.||+.+.++|++ ++..|. ..+.....+|.++ +++..+.+++.
T Consensus 180 IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi--~~l~el~~~~~ 230 (272)
T PRK13223 180 VGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVI--DDLRALLPGCA 230 (272)
T ss_pred ECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEE--CCHHHHHHHHh
Confidence 9999999999999996 344442 2233445789888 67888776544
No 86
>PRK08238 hypothetical protein; Validated
Probab=98.04 E-value=8.5e-05 Score=86.48 Aligned_cols=118 Identities=23% Similarity=0.245 Sum_probs=85.1
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC-ceEEe-----ccChhhHHHHHHHHhhcCCEEEEEcCCcC
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI-QDVMA-----DVMPAGKADAVRSFQKDGSIVAMVGDGIN 876 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi-~~~~~-----~~~p~~K~~~v~~l~~~g~~v~~vGDg~n 876 (997)
+++|++.+.+++++++|++++++|+.+...+..+++++|+ +.+.+ +..|+.|.+.+++...+ +.+.++||+.+
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd~Vigsd~~~~~kg~~K~~~l~~~l~~-~~~~yvGDS~~ 150 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFDGVFASDGTTNLKGAAKAAALVEAFGE-RGFDYAGNSAA 150 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCEEEeCCCccccCCchHHHHHHHHhCc-cCeeEecCCHH
Confidence 4779999999999999999999999999999999999997 65554 24566777655533222 22688999999
Q ss_pred CHHHHhcCCeeEEecCCcHHH---HHhcCEEE-ecCChhhHHHHHHHHH
Q 001906 877 DSPALAAADVGMAIGAGTDIA---IEAADYVL-MRNSLEDVIIAIDLSR 921 (997)
Q Consensus 877 D~~al~~A~vgia~~~~~~~~---~~~ad~vl-~~~~~~~l~~~i~~~r 921 (997)
|.++++.|+-+++++.+.... ++....+. ....-..+...+++.|
T Consensus 151 Dlp~~~~A~~av~Vn~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~l~R 199 (479)
T PRK08238 151 DLPVWAAARRAIVVGASPGVARAARALGPVERVFPPRPARLRTWLKALR 199 (479)
T ss_pred HHHHHHhCCCeEEECCCHHHHHHHHHcCCcceecCCCchHHHHHHHHhC
Confidence 999999999999998654432 22233333 2233334444555544
No 87
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.00 E-value=2.3e-05 Score=83.06 Aligned_cols=114 Identities=17% Similarity=0.049 Sum_probs=84.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-----C--hhhH----HHHHHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----M--PAGK----ADAVRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-----~--p~~K----~~~v~~l~~~g~~v~~v 871 (997)
++.|++.+.+++|+++|+++.++|+.+...+..+.+.+|+...|..+ . ++.+ ..+++.+....+.++||
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~I 174 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYV 174 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEe
Confidence 57899999999999999999999999999999899999987544221 1 1122 34555555567789999
Q ss_pred cCCcCCHHHHhcCCee---EEecCC--cH-HHHHhcCEEEecCChhhHHHHHH
Q 001906 872 GDGINDSPALAAADVG---MAIGAG--TD-IAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 872 GDg~nD~~al~~A~vg---ia~~~~--~~-~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
||+.+|+.+.++|++. +..|.. .+ .....+|+++ +++..+.+.+.
T Consensus 175 GDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i--~~~~el~~~~~ 225 (229)
T PRK13226 175 GDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLV--EQPQLLWNPAT 225 (229)
T ss_pred CCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeee--CCHHHHHHHhc
Confidence 9999999999999954 455532 22 2234689988 77777766543
No 88
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.93 E-value=3.3e-05 Score=83.34 Aligned_cols=113 Identities=20% Similarity=0.192 Sum_probs=81.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE-ecc---------Chhh--HHHHHHHHhhc-CCEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM-ADV---------MPAG--KADAVRSFQKD-GSIVA 869 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~-~~~---------~p~~--K~~~v~~l~~~-g~~v~ 869 (997)
.+.|++.++++.|+++|+++.++|+.....+..+.+.+|+..+| ..+ .|+. =...++.+... .+.++
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l 178 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACV 178 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchheE
Confidence 56799999999999999999999999999999999999887654 221 1221 12334444432 45699
Q ss_pred EEcCCcCCHHHHhcCC---eeEEecCC----c--------------------HHH-HHhcCEEEecCChhhHHHHH
Q 001906 870 MVGDGINDSPALAAAD---VGMAIGAG----T--------------------DIA-IEAADYVLMRNSLEDVIIAI 917 (997)
Q Consensus 870 ~vGDg~nD~~al~~A~---vgia~~~~----~--------------------~~~-~~~ad~vl~~~~~~~l~~~i 917 (997)
||||..+|+.+.++|+ |++..|.. + +.. ...+|+++ +++..+...+
T Consensus 179 ~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~--~~~~el~~~~ 252 (253)
T TIGR01422 179 KVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKAAGAHYVI--DTLAELPAVI 252 (253)
T ss_pred EECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHhcCCCEeh--hcHHHHHHhh
Confidence 9999999999999999 44555533 1 222 23478888 7777776543
No 89
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.93 E-value=2.3e-05 Score=82.71 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=81.5
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-------ChhhHHHHHH----HHhhcCCEEEE
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGKADAVR----SFQKDGSIVAM 870 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~~v~----~l~~~g~~v~~ 870 (997)
-++.|++.++++.|+++|++++++|+........+.+.+|+..+|..+ .++.+.+..+ .+....+.++|
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 170 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVA 170 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEE
Confidence 468899999999999999999999999999999999999998765543 1222333333 33333467999
Q ss_pred EcCCcCCHHHHhcCCeeEEe-cC---CcHHHHHhcCEEEecCChhhHHH
Q 001906 871 VGDGINDSPALAAADVGMAI-GA---GTDIAIEAADYVLMRNSLEDVII 915 (997)
Q Consensus 871 vGDg~nD~~al~~A~vgia~-~~---~~~~~~~~ad~vl~~~~~~~l~~ 915 (997)
|||+.||+.+.++|++.... .. ..+.-...+|+++ .++..+..
T Consensus 171 igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~--~~~~dl~~ 217 (222)
T PRK10826 171 LEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKL--ESLTELTA 217 (222)
T ss_pred EcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheec--cCHHHHhh
Confidence 99999999999999976433 22 2222234578777 66666543
No 90
>PLN02382 probable sucrose-phosphatase
Probab=97.90 E-value=7.8e-05 Score=85.60 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=91.9
Q ss_pred EEEEECCeEEEEEEecC--CCcHhHHHHH-HHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce------------------
Q 001906 786 ILVAYDDNLIGVMGIAD--PVKREAAVVV-EGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------ 844 (997)
Q Consensus 786 i~va~~~~~lG~i~~~d--~~~~~~~~~i-~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~------------------ 844 (997)
++.-.|++++.- .+ .+.+....++ +++++.|+.++++||+.......+.+++++..
T Consensus 12 I~sDLDGTLL~~---~~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~~~I~~nGt~I~~~~~~ 88 (413)
T PLN02382 12 IVSDLDHTMVDH---HDPENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPDITIMSVGTEIAYGESM 88 (413)
T ss_pred EEEcCCCcCcCC---CCccchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCCEEEEcCCcEEEeCCCC
Confidence 333457777742 13 3443444444 89999999999999999999999999988640
Q ss_pred ----------------------------------------------------------------------------EEec
Q 001906 845 ----------------------------------------------------------------------------VMAD 848 (997)
Q Consensus 845 ----------------------------------------------------------------------------~~~~ 848 (997)
.+-+
T Consensus 89 ~~d~~w~~~l~~~w~~~~v~~~~~~~~~l~~q~~~~~~~~Ki~~~~~~~~~~~~~~~l~~~~~~~g~~~~i~~s~~~~ld 168 (413)
T PLN02382 89 VPDHGWVEYLNKKWDREIVVEETSKFPELKLQPETEQRPHKVSFYVDKKKAQEVIKELSERLEKRGLDVKIIYSGGIDLD 168 (413)
T ss_pred ccChhHHHHHhccCChhhHHHHHhcCCCcccCCcccCCCeEEEEEechHHhHHHHHHHHHHHHhcCCcEEEEEECCcEEE
Confidence 0111
Q ss_pred cChh--hHHHHHHHHhhc-------CCEEEEEcCCcCCHHHHhcCC-eeEEecCCcHHHHHhc--------CEEEe-cCC
Q 001906 849 VMPA--GKADAVRSFQKD-------GSIVAMVGDGINDSPALAAAD-VGMAIGAGTDIAIEAA--------DYVLM-RNS 909 (997)
Q Consensus 849 ~~p~--~K~~~v~~l~~~-------g~~v~~vGDg~nD~~al~~A~-vgia~~~~~~~~~~~a--------d~vl~-~~~ 909 (997)
+.|. .|...++.|.+. .+.++++||+.||.+||+.++ .||+|+|+.+..++.+ +++.. +++
T Consensus 169 I~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~~elk~~a~~~~~~~~~~~~a~~~~ 248 (413)
T PLN02382 169 VLPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQEELLQWYAENAKDNPKIIHATERC 248 (413)
T ss_pred EEeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCcHHHHHHHHhhccCCCcEEEcCCCC
Confidence 2232 366666666543 347899999999999999999 6999999999888753 44533 345
Q ss_pred hhhHHHHHH
Q 001906 910 LEDVIIAID 918 (997)
Q Consensus 910 ~~~l~~~i~ 918 (997)
-+++.++|+
T Consensus 249 ~~GI~~al~ 257 (413)
T PLN02382 249 AAGIIQAIG 257 (413)
T ss_pred ccHHHHHHH
Confidence 667777664
No 91
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.89 E-value=2.2e-05 Score=94.64 Aligned_cols=67 Identities=46% Similarity=0.772 Sum_probs=61.1
Q ss_pred eEEEEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcc-hHHHHHHHHhcCcchhh
Q 001906 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVK-DEDIKNAIEDAGFEAEI 113 (997)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~-~~~i~~~i~~~Gy~~~~ 113 (997)
++.++.++||+|++|+++|| ++++++||.++++|+.++++.+.+++...+ .+++...+++.||.+..
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 45679999999999999999 999999999999999999999999876555 78999999999998754
No 92
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.84 E-value=7.4e-05 Score=80.26 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=80.3
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-------ChhhH----HHHHHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGK----ADAVRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K----~~~v~~l~~~g~~v~~v 871 (997)
++.|++.++++.|+++|+++.++|+.....+....+.+|+.++|..+ .++.+ ..+++.+....+.++||
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~v 187 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVF 187 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEE
Confidence 57899999999999999999999999999999999999998655432 11222 33445555456789999
Q ss_pred cCCcCCHHHHhcCCee---EEecCCcH-HHHHhcCEEEecCChhh
Q 001906 872 GDGINDSPALAAADVG---MAIGAGTD-IAIEAADYVLMRNSLED 912 (997)
Q Consensus 872 GDg~nD~~al~~A~vg---ia~~~~~~-~~~~~ad~vl~~~~~~~ 912 (997)
||..+|+.+.++|++- +..|...+ .....+|+++ +++..
T Consensus 188 gDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi--~~~~e 230 (248)
T PLN02770 188 EDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLI--KDYED 230 (248)
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEe--ccchh
Confidence 9999999999999954 44443222 2234688887 55554
No 93
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.79 E-value=7.2e-05 Score=71.70 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=68.0
Q ss_pred ecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----eEEec-----------------------cChh
Q 001906 800 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----DVMAD-----------------------VMPA 852 (997)
Q Consensus 800 ~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~----~~~~~-----------------------~~p~ 852 (997)
....+.+++.+.+++|+++|++++++||.....+....+.+|+. .++.. -.++
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHH
Confidence 34588999999999999999999999999999999999999983 22221 1122
Q ss_pred hHHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCC-eeEE
Q 001906 853 GKADAVRSFQKDGSIVAMVGDGINDSPALAAAD-VGMA 889 (997)
Q Consensus 853 ~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~-vgia 889 (997)
.+..+.+.+....+.++++||+.+|..|++.++ -+|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 101 KLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred HHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 223344444444678999999999999999844 4443
No 94
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.78 E-value=7.8e-05 Score=87.65 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=86.1
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc------ChhhHHHHHHHHhh--cCCEEEEEcCC
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV------MPAGKADAVRSFQK--DGSIVAMVGDG 874 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~------~p~~K~~~v~~l~~--~g~~v~~vGDg 874 (997)
++.||+.+.++.|+++|+++.++|+.....+..+.+.+|+.++|..+ .+..|.+.+....+ ..+.+++|||+
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~~~~~v~VGDs 409 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIKEAAVVGDR 409 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcCcceEEEEeCC
Confidence 67899999999999999999999999999999999999997655432 11234443333322 35679999999
Q ss_pred cCCHHHHhcCCee-EEe--cCCcHHHHHhcCEEEecCChhhHHHHHHHH
Q 001906 875 INDSPALAAADVG-MAI--GAGTDIAIEAADYVLMRNSLEDVIIAIDLS 920 (997)
Q Consensus 875 ~nD~~al~~A~vg-ia~--~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~ 920 (997)
.+|+.+.++|++- |.+ +...+.....+|+++ +++..+..++...
T Consensus 410 ~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i--~~l~el~~~l~~~ 456 (459)
T PRK06698 410 LSDINAAKDNGLIAIGCNFDFAQEDELAQADIVI--DDLLELKGILSTV 456 (459)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEe--CCHHHHHHHHHHH
Confidence 9999999999963 333 433332334689888 7788887776543
No 95
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.77 E-value=0.0001 Score=79.37 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=80.9
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC-------hhhHH----HHHHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM-------PAGKA----DAVRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~-------p~~K~----~~v~~l~~~g~~v~~v 871 (997)
++.|++.+.++.|+++|+++.++|+.+...+..+.+.+|+..+|..+. ++.+. .+++.+.-..+.++||
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~I 188 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVF 188 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEE
Confidence 568999999999999999999999999999999999999975443221 12222 3444444456779999
Q ss_pred cCCcCCHHHHhcCCee-EEe-cCCcHHHHHhcCEEEecCChhhHHH
Q 001906 872 GDGINDSPALAAADVG-MAI-GAGTDIAIEAADYVLMRNSLEDVII 915 (997)
Q Consensus 872 GDg~nD~~al~~A~vg-ia~-~~~~~~~~~~ad~vl~~~~~~~l~~ 915 (997)
||..+|+.|.++|++. |++ |.........+|+++ ++++.+..
T Consensus 189 gDs~~Di~aA~~aG~~~i~v~g~~~~~~l~~ad~vi--~~~~el~~ 232 (260)
T PLN03243 189 GNSNSSVEAAHDGCMKCVAVAGKHPVYELSAGDLVV--RRLDDLSV 232 (260)
T ss_pred cCCHHHHHHHHHcCCEEEEEecCCchhhhccCCEEe--CCHHHHHH
Confidence 9999999999999964 233 333333334578887 66665543
No 96
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.76 E-value=0.00011 Score=79.84 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=80.3
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE-----ec-cC--hhhHH----HHHHHHhhc-CCEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM-----AD-VM--PAGKA----DAVRSFQKD-GSIVA 869 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~-----~~-~~--p~~K~----~~v~~l~~~-g~~v~ 869 (997)
.+.|++.++|+.|+++|+++.++||.....+..+.+.+|+..++ +. -. ++.+. .+++.+... .+.++
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l 180 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACV 180 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceE
Confidence 57899999999999999999999999999988888877664432 11 11 11122 233334332 36799
Q ss_pred EEcCCcCCHHHHhcCCe---eEEecCCc------------------------HH-HHHhcCEEEecCChhhHHHHHH
Q 001906 870 MVGDGINDSPALAAADV---GMAIGAGT------------------------DI-AIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 870 ~vGDg~nD~~al~~A~v---gia~~~~~------------------------~~-~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
||||+.+|+.+.++|++ ++..|... +. ....+|+++ +++..+...+.
T Consensus 181 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~vi--~~~~~l~~~l~ 255 (267)
T PRK13478 181 KVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAGAHYVI--DTIADLPAVIA 255 (267)
T ss_pred EEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcCCCeeh--hhHHHHHHHHH
Confidence 99999999999999995 55555331 22 233478888 77888877664
No 97
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.71 E-value=0.00025 Score=67.89 Aligned_cols=111 Identities=19% Similarity=0.255 Sum_probs=94.4
Q ss_pred HHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhH
Q 001906 775 VVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGK 854 (997)
Q Consensus 775 ~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K 854 (997)
.+.+...|.+.+.+..|.+++.. =.....|+.++-+..++++|++++++|+.+...+...++.+|++-++....|-.+
T Consensus 20 ~~~L~~~Gikgvi~DlDNTLv~w--d~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~ 97 (175)
T COG2179 20 PDILKAHGIKGVILDLDNTLVPW--DNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGR 97 (175)
T ss_pred HHHHHHcCCcEEEEeccCceecc--cCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHH
Confidence 45678899999999999998885 2456779999999999999999999999999999999999999988887777665
Q ss_pred --HHHHHHHhhcCCEEEEEcCC-cCCHHHHhcCCee
Q 001906 855 --ADAVRSFQKDGSIVAMVGDG-INDSPALAAADVG 887 (997)
Q Consensus 855 --~~~v~~l~~~g~~v~~vGDg-~nD~~al~~A~vg 887 (997)
.+.++.++-..+.|+||||. ..|+-+-+.+++-
T Consensus 98 ~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~ 133 (175)
T COG2179 98 AFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMR 133 (175)
T ss_pred HHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcE
Confidence 35666777678899999999 5699888888753
No 98
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.69 E-value=0.00035 Score=74.40 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=48.6
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 001906 784 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 843 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~ 843 (997)
+.++.-.|++++- -.+...+.++++|++|+++|+.+++.||+.......+.+++|+.
T Consensus 2 KLIftDLDGTLLd---~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 2 RLVLSSLDGSLLD---LEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred cEEEEeCCCCCcC---CCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 3566667888775 25567788999999999999999999999999999999999974
No 99
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.69 E-value=0.00013 Score=76.83 Aligned_cols=114 Identities=23% Similarity=0.200 Sum_probs=81.4
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--eEEecc----C---hhhHHH----HHHHHhhc-CCE
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--DVMADV----M---PAGKAD----AVRSFQKD-GSI 867 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~--~~~~~~----~---p~~K~~----~v~~l~~~-g~~ 867 (997)
.++.||+.+.+++|+++|+++.++|+........+.+.+|+. ++|..+ . .+.+.+ .++.+... ++.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 478999999999999999999999999999999999999986 543322 1 112223 33333333 467
Q ss_pred EEEEcCCcCCHHHHhcCCeeEE--ecCC--cH-HH-HHhcCEEEecCChhhHHHHH
Q 001906 868 VAMVGDGINDSPALAAADVGMA--IGAG--TD-IA-IEAADYVLMRNSLEDVIIAI 917 (997)
Q Consensus 868 v~~vGDg~nD~~al~~A~vgia--~~~~--~~-~~-~~~ad~vl~~~~~~~l~~~i 917 (997)
++||||+.+|+.+.++|++..+ +..+ .. .. ...+|+++ +++..+..++
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i--~~~~~l~~~~ 219 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVL--DSVADLPALL 219 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceee--cCHHHHHHhh
Confidence 9999999999999999998752 3222 22 22 23477777 6677766543
No 100
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.66 E-value=0.00013 Score=90.35 Aligned_cols=95 Identities=25% Similarity=0.361 Sum_probs=69.3
Q ss_pred cceeecCCCCCCCCCchhhhhccCCCCCccccCCCceEEEEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEE
Q 001906 10 QLTELNGGGSSDGDDREDEWLLNNYDGKKERIGDGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVV 89 (997)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~ 89 (997)
+-++..++|||+++...+.+.+.+ +......+..+.++||+|++|++++++.+.+.+||..+++++.+++..+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~ 96 (741)
T PRK11033 23 TAVQNADDCCCDGACSSSPTLSED------TPLVSGTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVD 96 (741)
T ss_pred CCCCCCCCccccCcCCCCCCcccc------cccCCCceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEE
Confidence 344556777776555333332221 11233345668899999999999999999999999999999999999988
Q ss_pred ECCCCcchHHHHHHHHhcCcchh
Q 001906 90 FDPDLVKDEDIKNAIEDAGFEAE 112 (997)
Q Consensus 90 ~~~~~~~~~~i~~~i~~~Gy~~~ 112 (997)
+++. .. +++.+.+++.||++.
T Consensus 97 ~d~~-~~-~~I~~aI~~~Gy~a~ 117 (741)
T PRK11033 97 ADND-IR-AQVESAVQKAGFSLR 117 (741)
T ss_pred eccc-ch-HHHHHHHHhcccccc
Confidence 8654 23 677778888898764
No 101
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.65 E-value=0.00026 Score=71.11 Aligned_cols=108 Identities=21% Similarity=0.236 Sum_probs=81.4
Q ss_pred HHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCC-HHHHHHHHHHcCCceEEeccChhhH--
Q 001906 778 LEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDN-WRTAHAVAREIGIQDVMADVMPAGK-- 854 (997)
Q Consensus 778 ~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~-~~~a~~ia~~~gi~~~~~~~~p~~K-- 854 (997)
+.+.+.+.+.+..|+++.-. -...+.+++.+++++|++.|++++++|+.+ ...+..+.+.+|+..++....|...
T Consensus 20 ~~~~~v~~vv~D~Dgtl~~~--~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~KP~p~~~ 97 (170)
T TIGR01668 20 LKKVGIKGVVLDKDNTLVYP--DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLPHAVKPPGCAF 97 (170)
T ss_pred HHHCCCCEEEEecCCccccC--CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEcCCCCCChHHH
Confidence 35678888888888876532 133688999999999999999999999988 6778888899998655433344322
Q ss_pred HHHHHHHhhcCCEEEEEcCCc-CCHHHHhcCCee
Q 001906 855 ADAVRSFQKDGSIVAMVGDGI-NDSPALAAADVG 887 (997)
Q Consensus 855 ~~~v~~l~~~g~~v~~vGDg~-nD~~al~~A~vg 887 (997)
..+++.+....+.++||||.. .|+.+.++|++-
T Consensus 98 ~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~ 131 (170)
T TIGR01668 98 RRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSY 131 (170)
T ss_pred HHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCe
Confidence 223333333456799999998 799999999964
No 102
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.62 E-value=0.0005 Score=73.46 Aligned_cols=116 Identities=19% Similarity=0.249 Sum_probs=83.3
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----eEEecc-----------Ch------hhHHHHHHH
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----DVMADV-----------MP------AGKADAVRS 860 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~----~~~~~~-----------~p------~~K~~~v~~ 860 (997)
-+++||+.+.++.|+++|+++.++||-....+..+.+++|+. .++++. .| ..|.+.+..
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~ 199 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVAL 199 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHH
Confidence 467999999999999999999999999999999999999984 332211 12 235544332
Q ss_pred -----Hh--hcCCEEEEEcCCcCCHHHHhcC---CeeEEec--CC-----cHHHHHhcCEEEecCChhhHHHHH
Q 001906 861 -----FQ--KDGSIVAMVGDGINDSPALAAA---DVGMAIG--AG-----TDIAIEAADYVLMRNSLEDVIIAI 917 (997)
Q Consensus 861 -----l~--~~g~~v~~vGDg~nD~~al~~A---~vgia~~--~~-----~~~~~~~ad~vl~~~~~~~l~~~i 917 (997)
+. .....++++|||.||+.|..-. .--+.+| +. -+.-.++-|+|+.+|.--.++..|
T Consensus 200 ~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~t~~v~~~i 273 (277)
T TIGR01544 200 RNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDETLEVANSI 273 (277)
T ss_pred HHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCCCchHHHHH
Confidence 22 3456799999999999997654 2223444 42 234567889999988766666554
No 103
>PTZ00174 phosphomannomutase; Provisional
Probab=97.62 E-value=0.00031 Score=75.39 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=44.5
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Q 001906 783 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 838 (997)
Q Consensus 783 ~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~ 838 (997)
.+.+++-.||+++. =..++.+.++++|++++++|++++++||++........+
T Consensus 5 ~klia~DlDGTLL~---~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 5 KTILLFDVDGTLTK---PRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CeEEEEECcCCCcC---CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 56777888888774 234699999999999999999999999999998777665
No 104
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.62 E-value=0.00019 Score=80.34 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=81.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---------Chh--hHHHHHHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPA--GKADAVRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~---------~p~--~K~~~v~~l~~~g~~v~~v 871 (997)
.+.||+.++++.|+++|+++.++|+.+...+..+.+.+|+.++|..+ .|+ -=...++.+....+.++||
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~I 295 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVF 295 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 47799999999999999999999999999999999999997655433 121 1133555555567889999
Q ss_pred cCCcCCHHHHhcCCee-EEecCCc-HHHHHhcCEEEecCChhhH
Q 001906 872 GDGINDSPALAAADVG-MAIGAGT-DIAIEAADYVLMRNSLEDV 913 (997)
Q Consensus 872 GDg~nD~~al~~A~vg-ia~~~~~-~~~~~~ad~vl~~~~~~~l 913 (997)
||..+|+.|.++|++- |++..+. ......+|+++ +++..+
T Consensus 296 GDS~~DIeAAk~AGm~~IgV~~~~~~~~l~~Ad~iI--~s~~EL 337 (381)
T PLN02575 296 GNSNQTVEAAHDARMKCVAVASKHPIYELGAADLVV--RRLDEL 337 (381)
T ss_pred cCCHHHHHHHHHcCCEEEEECCCCChhHhcCCCEEE--CCHHHH
Confidence 9999999999999965 3333322 12223588887 667665
No 105
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.58 E-value=0.00027 Score=83.59 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=48.4
Q ss_pred CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Q 001906 782 ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI 842 (997)
Q Consensus 782 g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi 842 (997)
-.+.++...|++++.- .+...+.++++|++|+++|+.++++||++...+..+++++|+
T Consensus 415 ~~KLIfsDLDGTLLd~---d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 415 FKKIVYTDLDGTLLNP---LTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGI 472 (694)
T ss_pred eeeEEEEECcCCCcCC---CCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 3456777888888752 334557889999999999999999999999999999999986
No 106
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.57 E-value=0.00022 Score=74.99 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=65.8
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCC----CHHHHHHHHHHcCCceEEecc-----ChhhHHHHHHHHhhcCCEEEEEcC
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGD----NWRTAHAVAREIGIQDVMADV-----MPAGKADAVRSFQKDGSIVAMVGD 873 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd----~~~~a~~ia~~~gi~~~~~~~-----~p~~K~~~v~~l~~~g~~v~~vGD 873 (997)
.+.+++++.++.++++|+++.++|++ ...++..+.+.+|++..|..+ ....|......+++.+ .++|+||
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~~~-i~i~vGD 192 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQDKN-IRIHYGD 192 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHhCC-CeEEEeC
Confidence 45566999999999999999999998 777999999999998654322 1111222223445555 4899999
Q ss_pred CcCCHHHHhcCC---eeEEec
Q 001906 874 GINDSPALAAAD---VGMAIG 891 (997)
Q Consensus 874 g~nD~~al~~A~---vgia~~ 891 (997)
..||..+.++|+ +++.+|
T Consensus 193 s~~DI~aAk~AGi~~I~V~~g 213 (237)
T TIGR01672 193 SDNDITAAKEAGARGIRILRA 213 (237)
T ss_pred CHHHHHHHHHCCCCEEEEEec
Confidence 999999999999 455566
No 107
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.56 E-value=0.00055 Score=85.16 Aligned_cols=143 Identities=20% Similarity=0.272 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHcCCeEEEEEECCeEEEEEEe--cCCCcHhHHHHHHHHHH-CCCeEEEEcCCCHHHHHHHHHHcCCce--
Q 001906 770 HVESFVVELEESARTGILVAYDDNLIGVMGI--ADPVKREAAVVVEGLLK-MGVRPVMVTGDNWRTAHAVAREIGIQD-- 844 (997)
Q Consensus 770 ~~~~~~~~~~~~g~~~i~va~~~~~lG~i~~--~d~~~~~~~~~i~~l~~-~gi~~~i~Tgd~~~~a~~ia~~~gi~~-- 844 (997)
+.+.....|....++.+++.+||+++..-.- ...+.+++.++|++|++ .|+.++++||+...........+++.-
T Consensus 479 ~~~~~~~~y~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l~lia 558 (726)
T PRK14501 479 AAEEIIARYRAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPIHLVA 558 (726)
T ss_pred CHHHHHHHHHhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCeEEEE
Confidence 3455667777777899999999999874211 12467999999999999 599999999999999888776555420
Q ss_pred ---------------------------------------------------EE---------------------------
Q 001906 845 ---------------------------------------------------VM--------------------------- 846 (997)
Q Consensus 845 ---------------------------------------------------~~--------------------------- 846 (997)
++
T Consensus 559 enG~~i~~~~~~w~~~~~~~~~w~~~v~~il~~~~~~~~gs~ie~k~~~l~~~~r~~d~~~~~~~a~~l~~~l~~~~~~~ 638 (726)
T PRK14501 559 EHGAWSRAPGGEWQLLEPVATEWKDAVRPILEEFVDRTPGSFIEEKEASLAWHYRNADPELGEARANELILALSSLLSNA 638 (726)
T ss_pred eCCEEEeCCCCceEECCCcchhHHHHHHHHHHHHHhcCCCcEEEEcceEEEEEccCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 00
Q ss_pred ----------eccCh--hhHHHHHHHHhhc--CCEEEEEcCCcCCHHHHhcC---CeeEEecCCcHHHHHhcCEEEecCC
Q 001906 847 ----------ADVMP--AGKADAVRSFQKD--GSIVAMVGDGINDSPALAAA---DVGMAIGAGTDIAIEAADYVLMRNS 909 (997)
Q Consensus 847 ----------~~~~p--~~K~~~v~~l~~~--g~~v~~vGDg~nD~~al~~A---~vgia~~~~~~~~~~~ad~vl~~~~ 909 (997)
-++.| -.|...++.+.+. ...++++||+.||.+||+.+ +.+|+||++ ..+|++.+. +
T Consensus 639 ~~~v~~g~~~veV~p~~vnKG~al~~ll~~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~----~s~A~~~l~--~ 712 (726)
T PRK14501 639 PLEVLRGNKVVEVRPAGVNKGRAVRRLLEAGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG----ESRARYRLP--S 712 (726)
T ss_pred CeEEEECCeEEEEEECCCCHHHHHHHHHhcCCCCEEEEECCCCChHHHHHhcccCceEEEECCC----CCcceEeCC--C
Confidence 01112 1344555555432 25799999999999999986 688999875 357888884 4
Q ss_pred hhhHHHHHH
Q 001906 910 LEDVIIAID 918 (997)
Q Consensus 910 ~~~l~~~i~ 918 (997)
-+++..+++
T Consensus 713 ~~eV~~~L~ 721 (726)
T PRK14501 713 QREVRELLR 721 (726)
T ss_pred HHHHHHHHH
Confidence 466666654
No 108
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.51 E-value=0.00057 Score=65.54 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=75.2
Q ss_pred EEEEEECCeEEEEEEe-----cCCCcHhHHHHHHHHHHCCCeEEEEcCCC--------HHHHHHHHHHcCCceEEecc--
Q 001906 785 GILVAYDDNLIGVMGI-----ADPVKREAAVVVEGLLKMGVRPVMVTGDN--------WRTAHAVAREIGIQDVMADV-- 849 (997)
Q Consensus 785 ~i~va~~~~~lG~i~~-----~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~--------~~~a~~ia~~~gi~~~~~~~-- 849 (997)
.+.+..|+++..-... +..+.|++.+++++|++.|++++++|+.. ......+.+.+|+...+.-.
T Consensus 2 ~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 81 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACP 81 (132)
T ss_pred EEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 4666778877742111 24678999999999999999999999998 77888899999986322211
Q ss_pred -ChhhHH----HHHHHHh-hcCCEEEEEcC-CcCCHHHHhcCCee
Q 001906 850 -MPAGKA----DAVRSFQ-KDGSIVAMVGD-GINDSPALAAADVG 887 (997)
Q Consensus 850 -~p~~K~----~~v~~l~-~~g~~v~~vGD-g~nD~~al~~A~vg 887 (997)
.++.+. .+++.++ ...+.++|||| ..+|+.+.+.+++-
T Consensus 82 ~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 82 HCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLA 126 (132)
T ss_pred CCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCe
Confidence 122333 3444552 45578999999 69999999999864
No 109
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.50 E-value=0.00061 Score=71.85 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=44.3
Q ss_pred EEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 001906 787 LVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 843 (997)
Q Consensus 787 ~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~ 843 (997)
++-.||+++- .+...++++++|++|+++|++++++||++...+..+.+++|+.
T Consensus 3 ~~DlDGTLl~----~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 3 FTDLDGTLLP----PGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred EEeCCCCCcC----CCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 3445666654 4556678999999999999999999999999999999999973
No 110
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.50 E-value=0.00026 Score=74.65 Aligned_cols=89 Identities=19% Similarity=0.191 Sum_probs=68.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---------ChhhH--HHHHHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAGK--ADAVRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~---------~p~~K--~~~v~~l~~~g~~v~~v 871 (997)
++.|++.++++.|+++|++++++|+.+...+....+.+|+..+|..+ .|+.. ..+++.+....+.++||
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~i 173 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMV 173 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEE
Confidence 57899999999999999999999999988889999999997654332 12221 23444444445789999
Q ss_pred cCCc-CCHHHHhcCCee-EEec
Q 001906 872 GDGI-NDSPALAAADVG-MAIG 891 (997)
Q Consensus 872 GDg~-nD~~al~~A~vg-ia~~ 891 (997)
||.. +|+.+.++|++- |.+.
T Consensus 174 gDs~~~di~~A~~aG~~~i~~~ 195 (221)
T TIGR02253 174 GDRLDKDIKGAKNLGMKTVWIN 195 (221)
T ss_pred CCChHHHHHHHHHCCCEEEEEC
Confidence 9998 999999999964 4443
No 111
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.47 E-value=0.00065 Score=54.91 Aligned_cols=67 Identities=34% Similarity=0.523 Sum_probs=56.7
Q ss_pred ceEEEEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcch
Q 001906 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111 (997)
Q Consensus 45 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 111 (997)
|++..+.++||+|..|+..+++.+...+++....+++......+.+++.......+...+...||.+
T Consensus 1 ~~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 1 KQKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred CcEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 4566799999999999999999999999999999999999999988765556667767777788754
No 112
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.43 E-value=0.00079 Score=68.53 Aligned_cols=114 Identities=25% Similarity=0.250 Sum_probs=73.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCH---------------HHHHHHHHHcCC--ceEEec----------cCh--hh
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNW---------------RTAHAVAREIGI--QDVMAD----------VMP--AG 853 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~---------------~~a~~ia~~~gi--~~~~~~----------~~p--~~ 853 (997)
.+.|++.+++++|++.|+++.++|+.+. .....+.+.+|+ +.++.. ..| +-
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~~~~~~~~~~KP~p~~ 108 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPHHPEDGCDCRKPKPGM 108 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcCCCCCHHH
Confidence 3579999999999999999999998762 222334455665 334321 112 11
Q ss_pred HHHHHHHHhhcCCEEEEEcCCcCCHHHHhcCCee-EEe--cCCcH-HHHHhc--CEEEecCChhhHHHHHH
Q 001906 854 KADAVRSFQKDGSIVAMVGDGINDSPALAAADVG-MAI--GAGTD-IAIEAA--DYVLMRNSLEDVIIAID 918 (997)
Q Consensus 854 K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vg-ia~--~~~~~-~~~~~a--d~vl~~~~~~~l~~~i~ 918 (997)
-..+++.+....+.++||||+.+|+.+.++|++. |.+ |.... .....+ |+++ +++..+.+++.
T Consensus 109 ~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii--~~l~el~~~l~ 177 (181)
T PRK08942 109 LLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVL--DSLADLPQALK 177 (181)
T ss_pred HHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceee--cCHHHHHHHHH
Confidence 2334555555567899999999999999999964 222 32222 222235 7777 66777776654
No 113
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.42 E-value=0.00026 Score=74.67 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=67.1
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-------ChhhHHHH----HHHHhhcCCEEEE
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGKADA----VRSFQKDGSIVAM 870 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~~----v~~l~~~g~~v~~ 870 (997)
-.+.|++.+.++.|+++|+++.++|+.+...+....+.+|+.+.|..+ .++.+.++ .+.+.-..+.++|
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 171 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLF 171 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEE
Confidence 367899999999999999999999999999999888999986533321 12222333 3334444667999
Q ss_pred EcCCcCCHHHHhcCCee
Q 001906 871 VGDGINDSPALAAADVG 887 (997)
Q Consensus 871 vGDg~nD~~al~~A~vg 887 (997)
|||..+|+.+.++|++.
T Consensus 172 igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 172 IDDSEPILDAAAQFGIR 188 (224)
T ss_pred EcCCHHHHHHHHHcCCe
Confidence 99999999999999986
No 114
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.41 E-value=0.00042 Score=72.89 Aligned_cols=86 Identities=21% Similarity=0.228 Sum_probs=65.0
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHHHcCC--ceEEecc----Ch--hhHHHHHHHHhhcCCEEE
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDN----WRTAHAVAREIGI--QDVMADV----MP--AGKADAVRSFQKDGSIVA 869 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~----~~~a~~ia~~~gi--~~~~~~~----~p--~~K~~~v~~l~~~g~~v~ 869 (997)
-.+.+++++.++.|+++|+++.++||++ ..++..+.+.+|+ .+.+..+ .+ .+|.. .+++.+ .++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~---~l~~~~-i~I 188 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQ---WLKKKN-IRI 188 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHH---HHHhcC-CeE
Confidence 3477899999999999999999999964 6689999999999 5433221 11 33544 344444 489
Q ss_pred EEcCCcCCHHHHhcCCe---eEEec
Q 001906 870 MVGDGINDSPALAAADV---GMAIG 891 (997)
Q Consensus 870 ~vGDg~nD~~al~~A~v---gia~~ 891 (997)
|+||..+|..+.++|++ ++..|
T Consensus 189 ~IGDs~~Di~aA~~AGi~~I~v~~G 213 (237)
T PRK11009 189 FYGDSDNDITAAREAGARGIRILRA 213 (237)
T ss_pred EEcCCHHHHHHHHHcCCcEEEEecC
Confidence 99999999999999994 44455
No 115
>PRK11590 hypothetical protein; Provisional
Probab=97.38 E-value=0.00099 Score=69.61 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=72.8
Q ss_pred CCcHhHHHHH-HHHHHCCCeEEEEcCCCHHHHHHHHHHcCC---ceEEe--------------ccChhhHHHHHHHH-hh
Q 001906 803 PVKREAAVVV-EGLLKMGVRPVMVTGDNWRTAHAVAREIGI---QDVMA--------------DVMPAGKADAVRSF-QK 863 (997)
Q Consensus 803 ~~~~~~~~~i-~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi---~~~~~--------------~~~p~~K~~~v~~l-~~ 863 (997)
.+.|++.+.| +.|++.|++++++|+.....+..+++.+|+ +++.+ .+..++|..-++.. ..
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~~ 174 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIGT 174 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHhCC
Confidence 4589999999 578989999999999999999999999994 43222 13456888777654 33
Q ss_pred cCCEEEEEcCCcCCHHHHhcCCeeEEecCC
Q 001906 864 DGSIVAMVGDGINDSPALAAADVGMAIGAG 893 (997)
Q Consensus 864 ~g~~v~~vGDg~nD~~al~~A~vgia~~~~ 893 (997)
......+-||+.||.|||+.|+.+++++..
T Consensus 175 ~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~ 204 (211)
T PRK11590 175 PLRLYSGYSDSKQDNPLLYFCQHRWRVTPR 204 (211)
T ss_pred CcceEEEecCCcccHHHHHhCCCCEEECcc
Confidence 445567889999999999999999999643
No 116
>PRK11587 putative phosphatase; Provisional
Probab=97.36 E-value=0.00071 Score=71.19 Aligned_cols=109 Identities=20% Similarity=0.195 Sum_probs=75.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce---EEec-c----Chhh--HHHHHHHHhhcCCEEEEEc
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD---VMAD-V----MPAG--KADAVRSFQKDGSIVAMVG 872 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~---~~~~-~----~p~~--K~~~v~~l~~~g~~v~~vG 872 (997)
++.|++.++++.|+++|+++.++|+.+...+....+..|+.. +.+. - .|+. =....+.+.-..+.++|||
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~ig 162 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVE 162 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEEe
Confidence 578999999999999999999999998877777777788742 2211 1 1221 1223444544568899999
Q ss_pred CCcCCHHHHhcCCee-EEecCCc-HHHHHhcCEEEecCChhhH
Q 001906 873 DGINDSPALAAADVG-MAIGAGT-DIAIEAADYVLMRNSLEDV 913 (997)
Q Consensus 873 Dg~nD~~al~~A~vg-ia~~~~~-~~~~~~ad~vl~~~~~~~l 913 (997)
|..+|+.+.++|++. |++..+. ......+|+++ +++..+
T Consensus 163 Ds~~di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~--~~~~el 203 (218)
T PRK11587 163 DAPAGVLSGLAAGCHVIAVNAPADTPRLDEVDLVL--HSLEQL 203 (218)
T ss_pred cchhhhHHHHHCCCEEEEECCCCchhhhccCCEEe--cchhhe
Confidence 999999999999974 5554322 22334578777 445543
No 117
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.35 E-value=0.00065 Score=70.61 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=44.7
Q ss_pred EEEEECCeEEEEEEec-CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Q 001906 786 ILVAYDDNLIGVMGIA-DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI 842 (997)
Q Consensus 786 i~va~~~~~lG~i~~~-d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi 842 (997)
+++.+|++++.- . .++.+.+.++|++|++.|++++++||+....+..+.+.++.
T Consensus 2 i~~D~DgTL~~~---~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~ 56 (204)
T TIGR01484 2 LFFDLDGTLLDP---NAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLPL 56 (204)
T ss_pred EEEeCcCCCcCC---CCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCCC
Confidence 445677777751 2 35889999999999999999999999999999999987653
No 118
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.34 E-value=0.00036 Score=72.14 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=65.4
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc--------Ch--hhHHHHHHHHhhcCCEEEE
Q 001906 801 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV--------MP--AGKADAVRSFQKDGSIVAM 870 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~--------~p--~~K~~~v~~l~~~g~~v~~ 870 (997)
.+.+.++..++++.|++.|+++.++||.+...+..+.+.+|+..+|..+ .| +.-..+++.+....+.++|
T Consensus 104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~ 183 (197)
T TIGR01548 104 EDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAM 183 (197)
T ss_pred ccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence 3445667799999999999999999999999999999999997655322 22 2223455555556678999
Q ss_pred EcCCcCCHHHHhcC
Q 001906 871 VGDGINDSPALAAA 884 (997)
Q Consensus 871 vGDg~nD~~al~~A 884 (997)
|||+.+|+.+.++|
T Consensus 184 vGD~~~Di~aA~~a 197 (197)
T TIGR01548 184 VGDTVDDIITGRKA 197 (197)
T ss_pred EeCCHHHHHHHHhC
Confidence 99999999988765
No 119
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.32 E-value=0.0012 Score=68.86 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=70.9
Q ss_pred CCcHhHHHHHH-HHHHCCCeEEEEcCCCHHHHHHHHHHcCC---ceEEe--------------ccChhhHHHHHHHH-hh
Q 001906 803 PVKREAAVVVE-GLLKMGVRPVMVTGDNWRTAHAVAREIGI---QDVMA--------------DVMPAGKADAVRSF-QK 863 (997)
Q Consensus 803 ~~~~~~~~~i~-~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi---~~~~~--------------~~~p~~K~~~v~~l-~~ 863 (997)
.++|++.+.|+ .++++|++++++|+.+...+..+++..++ +++.+ .+..++|..-++.. ..
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~~ 173 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKIGS 173 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHhCC
Confidence 47899999996 88999999999999999999999988544 43222 13346788766644 33
Q ss_pred cCCEEEEEcCCcCCHHHHhcCCeeEEecC
Q 001906 864 DGSIVAMVGDGINDSPALAAADVGMAIGA 892 (997)
Q Consensus 864 ~g~~v~~vGDg~nD~~al~~A~vgia~~~ 892 (997)
......+-||+.||.|||+.||.++++..
T Consensus 174 ~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp 202 (210)
T TIGR01545 174 PLKLYSGYSDSKQDNPLLAFCEHRWRVSK 202 (210)
T ss_pred ChhheEEecCCcccHHHHHhCCCcEEECc
Confidence 33456789999999999999999999953
No 120
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.32 E-value=0.00064 Score=74.52 Aligned_cols=109 Identities=21% Similarity=0.246 Sum_probs=73.9
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc------eEEe-ccC--hhhHH----HHHHHHhhcCCEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ------DVMA-DVM--PAGKA----DAVRSFQKDGSIVA 869 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~------~~~~-~~~--p~~K~----~~v~~l~~~g~~v~ 869 (997)
++.|++.+.++.|++.|+++.++|+.+......+.+..+.. .++. .-. ++.+. .+++.+.-..+.++
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 223 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRCV 223 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHEE
Confidence 57899999999999999999999999988888777765321 1221 111 11222 24445544567899
Q ss_pred EEcCCcCCHHHHhcCCeeEE-e--cCCcHHHHHhcCEEEecCChhhH
Q 001906 870 MVGDGINDSPALAAADVGMA-I--GAGTDIAIEAADYVLMRNSLEDV 913 (997)
Q Consensus 870 ~vGDg~nD~~al~~A~vgia-~--~~~~~~~~~~ad~vl~~~~~~~l 913 (997)
||||+.+|+.|.++|++... + |.........+|+++ +++..+
T Consensus 224 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi--~~~~~l 268 (286)
T PLN02779 224 VVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVF--DCLGDV 268 (286)
T ss_pred EEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEE--CChhhc
Confidence 99999999999999996532 2 322222224688887 444443
No 121
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.29 E-value=0.00055 Score=72.27 Aligned_cols=111 Identities=20% Similarity=0.201 Sum_probs=78.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---------ChhhH--HHHHHHH-hhcCCEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAGK--ADAVRSF-QKDGSIVAM 870 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~---------~p~~K--~~~v~~l-~~~g~~v~~ 870 (997)
++.|++.+.+++|++. ++++++|+.....+..+.+.+|+..+|..+ .|+.. ..+++.+ .-..+.++|
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~ 175 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLM 175 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEE
Confidence 5789999999999999 999999999999999999999997544332 13222 2344444 434567999
Q ss_pred EcCCc-CCHHHHhcCCee-EEe--cCCcHHHHHhcCEEEecCChhhHHHH
Q 001906 871 VGDGI-NDSPALAAADVG-MAI--GAGTDIAIEAADYVLMRNSLEDVIIA 916 (997)
Q Consensus 871 vGDg~-nD~~al~~A~vg-ia~--~~~~~~~~~~ad~vl~~~~~~~l~~~ 916 (997)
|||+. +|+.+.+++++. |.+ +..+......+|.++ +++..+..+
T Consensus 176 igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~--~~~~el~~~ 223 (224)
T TIGR02254 176 IGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEI--RSLEELYEI 223 (224)
T ss_pred ECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEE--CCHHHHHhh
Confidence 99998 899999999963 333 322222223466676 667776654
No 122
>PRK09449 dUMP phosphatase; Provisional
Probab=97.25 E-value=0.0008 Score=71.09 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=77.3
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-----C--hhhHHH----HHHHHhhc-CCEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----M--PAGKAD----AVRSFQKD-GSIVAM 870 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-----~--p~~K~~----~v~~l~~~-g~~v~~ 870 (997)
++.|++.+++++|+ .|+++.++|+.....+....+.+|+.++|..+ . ++.+.+ +++.+... .+.++|
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~ 173 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLM 173 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 47899999999999 58999999999999999989999986533322 1 222233 33444322 357999
Q ss_pred EcCCc-CCHHHHhcCCee-EEec-CCcH-HHHHhcCEEEecCChhhHHHHH
Q 001906 871 VGDGI-NDSPALAAADVG-MAIG-AGTD-IAIEAADYVLMRNSLEDVIIAI 917 (997)
Q Consensus 871 vGDg~-nD~~al~~A~vg-ia~~-~~~~-~~~~~ad~vl~~~~~~~l~~~i 917 (997)
|||+. +|+.+.++|++- |.+. .+.. .....+|+++ +++..+..++
T Consensus 174 vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i--~~~~el~~~l 222 (224)
T PRK09449 174 VGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQV--SSLSELEQLL 222 (224)
T ss_pred EcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEE--CCHHHHHHHH
Confidence 99998 799999999975 4433 1211 1112467777 6677777654
No 123
>PLN02940 riboflavin kinase
Probab=97.25 E-value=0.00057 Score=77.95 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=75.8
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH-HcCCceEEecc---------Chhh--HHHHHHHHhhcCCEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR-EIGIQDVMADV---------MPAG--KADAVRSFQKDGSIVAM 870 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~-~~gi~~~~~~~---------~p~~--K~~~v~~l~~~g~~v~~ 870 (997)
.+.|++.+.+++|+++|+++.|+|+.....+....+ ..|+.+.|..+ .|+. =..+++.+....+.++|
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~ 172 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLV 172 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 567999999999999999999999999888887765 67886433322 1211 12344445445678999
Q ss_pred EcCCcCCHHHHhcCCee-EEec--CCcHHHHHhcCEEEecCChhh
Q 001906 871 VGDGINDSPALAAADVG-MAIG--AGTDIAIEAADYVLMRNSLED 912 (997)
Q Consensus 871 vGDg~nD~~al~~A~vg-ia~~--~~~~~~~~~ad~vl~~~~~~~ 912 (997)
|||+.+|+.+.++|++. |.+. .........+|.++ +++..
T Consensus 173 VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i--~sl~e 215 (382)
T PLN02940 173 IEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVI--NSLLD 215 (382)
T ss_pred EeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEe--CCHhH
Confidence 99999999999999965 3333 22233334567766 55554
No 124
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.23 E-value=0.00076 Score=74.78 Aligned_cols=88 Identities=11% Similarity=0.010 Sum_probs=70.7
Q ss_pred ecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-EEec------------------cChhhHHHHHHH
Q 001906 800 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-VMAD------------------VMPAGKADAVRS 860 (997)
Q Consensus 800 ~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~-~~~~------------------~~p~~K~~~v~~ 860 (997)
..+++.+++.++++.|++.|++++++||++...+..+.+.+|+.. +|.. -.|+-+...++.
T Consensus 184 ~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~ 263 (300)
T PHA02530 184 KEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWE 263 (300)
T ss_pred ccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999875 3221 112234445555
Q ss_pred Hhh-cCCEEEEEcCCcCCHHHHhcCCee
Q 001906 861 FQK-DGSIVAMVGDGINDSPALAAADVG 887 (997)
Q Consensus 861 l~~-~g~~v~~vGDg~nD~~al~~A~vg 887 (997)
+.. ..+.++||||..+|+.+.++|++.
T Consensus 264 ~~~~~~~~~~~vgD~~~d~~~a~~~Gi~ 291 (300)
T PHA02530 264 KIAPKYDVLLAVDDRDQVVDMWRRIGLE 291 (300)
T ss_pred HhccCceEEEEEcCcHHHHHHHHHhCCe
Confidence 433 347899999999999999999966
No 125
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.22 E-value=0.0013 Score=53.18 Aligned_cols=64 Identities=34% Similarity=0.510 Sum_probs=57.0
Q ss_pred cccccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCce
Q 001906 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193 (997)
Q Consensus 130 ~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~ 193 (997)
..+.++|+.|..|+..+++.+...+++....+++..+...+.|++.......+...+++.||.+
T Consensus 4 ~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 4 FTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 3578999999999999999999999999999999999999999877667888878788888864
No 126
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.20 E-value=0.00089 Score=69.24 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=68.3
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---------ChhhH--HHHHHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAGK--ADAVRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~---------~p~~K--~~~v~~l~~~g~~v~~v 871 (997)
++.|++.+++++|+++|++++++|+-+......+.+.+|+.++|..+ .|+.. ..+.+.+....+.+++|
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~v 171 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFV 171 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEE
Confidence 57899999999999999999999999999999999999986544322 22221 23444555556789999
Q ss_pred cCCcCCHHHHhcCCeeE
Q 001906 872 GDGINDSPALAAADVGM 888 (997)
Q Consensus 872 GDg~nD~~al~~A~vgi 888 (997)
||+.+|+.+.++|++-.
T Consensus 172 gD~~~Di~~A~~~G~~~ 188 (198)
T TIGR01428 172 ASNPWDLGGAKKFGFKT 188 (198)
T ss_pred eCCHHHHHHHHHCCCcE
Confidence 99999999999999753
No 127
>PLN02580 trehalose-phosphatase
Probab=97.13 E-value=0.0041 Score=69.68 Aligned_cols=62 Identities=11% Similarity=0.287 Sum_probs=46.0
Q ss_pred HHHHHHcCCeEEEEEECCeEEEEEEecC--CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 001906 775 VVELEESARTGILVAYDDNLIGVMGIAD--PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA 837 (997)
Q Consensus 775 ~~~~~~~g~~~i~va~~~~~lG~i~~~d--~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia 837 (997)
+..+.+...+.+++.|||++.-+..--| .+.+++++++++|.+. ..+.|+||+.........
T Consensus 111 ~~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l 174 (384)
T PLN02580 111 IANFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELV 174 (384)
T ss_pred HHHHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHh
Confidence 3345666678899999999987553211 3468999999999987 479999999876655543
No 128
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.001 Score=64.43 Aligned_cols=88 Identities=14% Similarity=0.122 Sum_probs=72.9
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC----CceE--E------------------eccChhhHHHHH
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIG----IQDV--M------------------ADVMPAGKADAV 858 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~g----i~~~--~------------------~~~~p~~K~~~v 858 (997)
.++|+.++.++.+++++++++++|+........+-+.++ |..+ . ...-..+|...|
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~vI 152 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSVI 152 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcchhH
Confidence 588999999999999999999999999999999998887 3210 0 011235799999
Q ss_pred HHHhhcCCEEEEEcCCcCCHHHHhcCCeeEEe
Q 001906 859 RSFQKDGSIVAMVGDGINDSPALAAADVGMAI 890 (997)
Q Consensus 859 ~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~ 890 (997)
+.+++..+.+.|+|||..|.+|.+.+|+=.|-
T Consensus 153 ~~l~e~~e~~fy~GDsvsDlsaaklsDllFAK 184 (220)
T COG4359 153 HELSEPNESIFYCGDSVSDLSAAKLSDLLFAK 184 (220)
T ss_pred HHhhcCCceEEEecCCcccccHhhhhhhHhhH
Confidence 99999999999999999999998888765543
No 129
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.09 E-value=0.0013 Score=65.76 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=69.9
Q ss_pred EecCCCcHhHHHHHHHHHHCCCeEEEEcCC-CHHHHHHHHHHcCCc---------eEEecc----Ch-hhH--HHHHHHH
Q 001906 799 GIADPVKREAAVVVEGLLKMGVRPVMVTGD-NWRTAHAVAREIGIQ---------DVMADV----MP-AGK--ADAVRSF 861 (997)
Q Consensus 799 ~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd-~~~~a~~ia~~~gi~---------~~~~~~----~p-~~K--~~~v~~l 861 (997)
.-+-++.|++.++++.|+++|+++.++|+. ....+..+.+.+|+. ++|..+ .+ ..| ..+.+.+
T Consensus 41 ~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~ 120 (174)
T TIGR01685 41 GTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKV 120 (174)
T ss_pred CCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHh
Confidence 334467899999999999999999999987 889999999999986 544332 12 222 2345555
Q ss_pred hh------cCCEEEEEcCCcCCHHHHhcCCeeEEe
Q 001906 862 QK------DGSIVAMVGDGINDSPALAAADVGMAI 890 (997)
Q Consensus 862 ~~------~g~~v~~vGDg~nD~~al~~A~vgia~ 890 (997)
.+ ..+.++||||...|+.+.++|++-...
T Consensus 121 ~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~ 155 (174)
T TIGR01685 121 NKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCY 155 (174)
T ss_pred hhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEE
Confidence 43 346899999999999999999976544
No 130
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.05 E-value=0.0021 Score=65.07 Aligned_cols=109 Identities=28% Similarity=0.235 Sum_probs=69.3
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCH---------------HHHHHHHHHcCCc--eEEec-------------c-Chh
Q 001906 804 VKREAAVVVEGLLKMGVRPVMVTGDNW---------------RTAHAVAREIGIQ--DVMAD-------------V-MPA 852 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~~~i~Tgd~~---------------~~a~~ia~~~gi~--~~~~~-------------~-~p~ 852 (997)
+.|++.++|++|+++|+++.++|+.+. .....+..+.|+. .++.. . ..+
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~K 106 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEGVEEFRQVCDCRK 106 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCcccccccCCCCCCC
Confidence 568999999999999999999998774 1222344444443 33321 0 012
Q ss_pred hHHH----HHHHHhhcCCEEEEEcCCcCCHHHHhcCCeeE--Ee--cCCc-HHHHHhcCEEEecCChhhHH
Q 001906 853 GKAD----AVRSFQKDGSIVAMVGDGINDSPALAAADVGM--AI--GAGT-DIAIEAADYVLMRNSLEDVI 914 (997)
Q Consensus 853 ~K~~----~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgi--a~--~~~~-~~~~~~ad~vl~~~~~~~l~ 914 (997)
.+.. +++.+.-..+.++||||..+|+.+.++|++.. .+ |... ......+|+++ +++..|.
T Consensus 107 P~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i--~~~~el~ 175 (176)
T TIGR00213 107 PKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVL--NSLADLP 175 (176)
T ss_pred CCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEe--ccHHHhh
Confidence 2333 33344444578999999999999999999753 33 3222 12223488888 5666553
No 131
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.01 E-value=0.001 Score=67.94 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=61.9
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-------ChhhHHHH----HHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGKADA----VRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~~----v~~l~~~g~~v~~v 871 (997)
.+.|++.++|+.|+++|+++.++|+... +....+.+|+...|..+ .++.+.++ ++.+.-..+.++||
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~v 164 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGI 164 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 6789999999999999999999997543 45678889987544432 12233333 33333345679999
Q ss_pred cCCcCCHHHHhcCCee
Q 001906 872 GDGINDSPALAAADVG 887 (997)
Q Consensus 872 GDg~nD~~al~~A~vg 887 (997)
||+.+|+.+.++|++-
T Consensus 165 gD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 165 EDAQAGIEAIKAAGMF 180 (185)
T ss_pred ecCHHHHHHHHHcCCE
Confidence 9999999999999975
No 132
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.99 E-value=0.0019 Score=64.42 Aligned_cols=116 Identities=22% Similarity=0.326 Sum_probs=87.4
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc---------------------------------------
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--------------------------------------- 843 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~--------------------------------------- 843 (997)
.+-|++.++++.|++. +..+++|-.-.+-+.++|..+|++
T Consensus 83 ~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L~~~~~~~~~~geel 161 (315)
T COG4030 83 KLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELLSIIDVIASLSGEEL 161 (315)
T ss_pred ccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCccccccccccCccccCChHHHHHHHHhcCccccccHHHH
Confidence 4669999999999875 456666667788899999999985
Q ss_pred -----eEEeccChhhHHHHHHHHhhc------------------CCEEEEEcCCcCCHHHHhcCC-e-eEEec-CCcHHH
Q 001906 844 -----DVMADVMPAGKADAVRSFQKD------------------GSIVAMVGDGINDSPALAAAD-V-GMAIG-AGTDIA 897 (997)
Q Consensus 844 -----~~~~~~~p~~K~~~v~~l~~~------------------g~~v~~vGDg~nD~~al~~A~-v-gia~~-~~~~~~ 897 (997)
.+|.++.|.+-.++++..+.- ....++|||++.|..||+.+. - |+|+. ||.+-+
T Consensus 162 fe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~sa~~VGDSItDv~ml~~~rgrGglAvaFNGNeYa 241 (315)
T COG4030 162 FEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFSAVVVGDSITDVKMLEAARGRGGLAVAFNGNEYA 241 (315)
T ss_pred HHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCCcceeEecCcccchHHHHHhhccCceEEEecCCccc
Confidence 256666665444444433321 234689999999999999876 2 35555 888999
Q ss_pred HHhcCEEEecCChhhHHHHHHH
Q 001906 898 IEAADYVLMRNSLEDVIIAIDL 919 (997)
Q Consensus 898 ~~~ad~vl~~~~~~~l~~~i~~ 919 (997)
...||+.+.+.+...+..+|++
T Consensus 242 l~eAdVAvisp~~~a~~pviel 263 (315)
T COG4030 242 LKEADVAVISPTAMAEAPVIEL 263 (315)
T ss_pred ccccceEEeccchhhhhHHHHH
Confidence 9999999999999998888874
No 133
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.93 E-value=0.0011 Score=67.58 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=63.3
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-------ChhhHHH----HHHHHhhcCCEEEE
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------MPAGKAD----AVRSFQKDGSIVAM 870 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-------~p~~K~~----~v~~l~~~g~~v~~ 870 (997)
-.+.|++.+++++|+++|+++.++|+. ..+..+.+.+|+..+|..+ .++.+.+ +.+.+....+.++|
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 164 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECVV 164 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 468999999999999999999999987 6678888899986544322 1122223 33333334567999
Q ss_pred EcCCcCCHHHHhcCCee
Q 001906 871 VGDGINDSPALAAADVG 887 (997)
Q Consensus 871 vGDg~nD~~al~~A~vg 887 (997)
|||+.+|+.+.++|++.
T Consensus 165 IgD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 165 FEDALAGVQAARAAGMF 181 (185)
T ss_pred EeCcHhhHHHHHHCCCe
Confidence 99999999999999875
No 134
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.91 E-value=0.005 Score=61.47 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=71.9
Q ss_pred CeEEEEEECCeEEEEEEec----C--C---CcHhHHHHHHHHHHCCCeEEEEcCCCHH------------HHHHHHHHcC
Q 001906 783 RTGILVAYDDNLIGVMGIA----D--P---VKREAAVVVEGLLKMGVRPVMVTGDNWR------------TAHAVAREIG 841 (997)
Q Consensus 783 ~~~i~va~~~~~lG~i~~~----d--~---~~~~~~~~i~~l~~~gi~~~i~Tgd~~~------------~a~~ia~~~g 841 (997)
.+.+++-+|++++-..... + + +.|++.+++++|+++|+++.++|+.+.. .+..+.+.+|
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~g 92 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLK 92 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcC
Confidence 3567778888887643211 1 1 4599999999999999999999986652 4677889999
Q ss_pred CceEEe---cc--ChhhHHH----HHHHHh--hcCCEEEEEcCCc--------CCHHHHhcCCeeE
Q 001906 842 IQDVMA---DV--MPAGKAD----AVRSFQ--KDGSIVAMVGDGI--------NDSPALAAADVGM 888 (997)
Q Consensus 842 i~~~~~---~~--~p~~K~~----~v~~l~--~~g~~v~~vGDg~--------nD~~al~~A~vgi 888 (997)
+...+. .- .++.+.. +++.+. -..+.++||||.. +|+.+.++|++-.
T Consensus 93 l~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 93 VPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred CCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCc
Confidence 864111 10 1122223 333333 2346799999986 6999999998754
No 135
>PLN02957 copper, zinc superoxide dismutase
Probab=96.89 E-value=0.0034 Score=66.44 Aligned_cols=67 Identities=24% Similarity=0.369 Sum_probs=58.1
Q ss_pred eEEEEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhhhcc
Q 001906 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAE 116 (997)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 116 (997)
+++.+.+ +|+|.+|+.++++.+.+.+||..+.+++..+++.+.++ ...+++.+.+++.||.+++...
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~~ 72 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIGQ 72 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEecC
Confidence 4556888 79999999999999999999999999999999999873 4578888999999999876544
No 136
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.013 Score=67.15 Aligned_cols=150 Identities=18% Similarity=0.375 Sum_probs=118.3
Q ss_pred CeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----------------------------
Q 001906 792 DNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---------------------------- 843 (997)
Q Consensus 792 ~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~---------------------------- 843 (997)
..|.|++.+..+.+++....|+.|-++-++.+-.|-.+....+-.|+++||.
T Consensus 815 QIf~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELkSkVFAEKlGiEaGWNCHISLa~~~d~Pg~e~~pa~~q~a 894 (1354)
T KOG4383|consen 815 QIFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELKSKVFAEKLGIEAGWNCHISLAEEEDAPGREAGPAHEQFA 894 (1354)
T ss_pred chhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHHHHHHHHHhccccccceeEEeccCCCCCcccCCCCChhhh
Confidence 3789999999999999999999999999999999999999999999999996
Q ss_pred ---------------------------------------------------------------------------eEEec
Q 001906 844 ---------------------------------------------------------------------------DVMAD 848 (997)
Q Consensus 844 ---------------------------------------------------------------------------~~~~~ 848 (997)
..|..
T Consensus 895 ~qkpSlhddlnqia~ddaeg~lL~~Eeg~~dliSfq~~dsdi~kf~ed~N~AkLPrGihnVRPHL~~iDNVPLLV~LFTD 974 (1354)
T KOG4383|consen 895 AQKPSLHDDLNQIALDDAEGELLDCEEGARDLISFQKMDSDIAKFAEDPNIAKLPRGIHNVRPHLDEIDNVPLLVGLFTD 974 (1354)
T ss_pred ccCcchhHHHHHhhhcccccceeehhhcccCCccccccccchhhhcCCCchhhcCcchhhcCcccccccCcceeeeeccC
Confidence 16777
Q ss_pred cChhhHHHHHHHHhhcCCEEEEEcCCcCC--HHHHhcCCeeEEecC-------------CcHHHH-HhcC----------
Q 001906 849 VMPAGKADAVRSFQKDGSIVAMVGDGIND--SPALAAADVGMAIGA-------------GTDIAI-EAAD---------- 902 (997)
Q Consensus 849 ~~p~~K~~~v~~l~~~g~~v~~vGDg~nD--~~al~~A~vgia~~~-------------~~~~~~-~~ad---------- 902 (997)
.+|+.-.+.|+-+|+.|+.++.+|...|- .-.+-+||++|++-. ++.... ++.|
T Consensus 975 cnpeamcEMIeIMQE~GEVtcclGS~aN~rNSciflkadISialD~l~~~~C~~e~fg~assismaqandglsplQiSgq 1054 (1354)
T KOG4383|consen 975 CNPEAMCEMIEIMQENGEVTCCLGSCANARNSCIFLKADISIALDDLEEPACRLEDFGVASSISMAQANDGLSPLQISGQ 1054 (1354)
T ss_pred CCHHHHHHHHHHHHHcCcEEEEeccccccccceEEEccceeEEeccCCCccceecccccchhhhhhhhcCCCCceeeccc
Confidence 88999999999999999999999998874 335578999999842 111111 1222
Q ss_pred -------EEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 903 -------YVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIA 941 (997)
Q Consensus 903 -------~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~i~ 941 (997)
+-+....+-.+..+|+-+|....-+|..+.|.+...+..
T Consensus 1055 LnaL~c~~~f~~ee~ikiirLIe~ARHa~~g~R~cfLFiLq~qL~l 1100 (1354)
T KOG4383|consen 1055 LNALACDFRFDHEELIKIIRLIECARHAMSGFRHCFLFILQAQLLL 1100 (1354)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 222222344566788889999999999999987665543
No 137
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=96.84 E-value=0.001 Score=66.88 Aligned_cols=87 Identities=18% Similarity=0.240 Sum_probs=69.0
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---------Chhh--HHHHHHHHhhcCCEEE
Q 001906 801 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAG--KADAVRSFQKDGSIVA 869 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~---------~p~~--K~~~v~~l~~~g~~v~ 869 (997)
..++.|++.+.+++|+++|++++++|+.+........+.+|+...|..+ .|+. =..+++.+.-.++.++
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~ 154 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEIL 154 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEE
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEE
Confidence 4467899999999999999999999999999999999999987433221 1211 1235555555678899
Q ss_pred EEcCCcCCHHHHhcCCee
Q 001906 870 MVGDGINDSPALAAADVG 887 (997)
Q Consensus 870 ~vGDg~nD~~al~~A~vg 887 (997)
+|||+..|+.+.+.||+.
T Consensus 155 ~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 155 FVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp EEESSHHHHHHHHHTTSE
T ss_pred EEeCCHHHHHHHHHcCCe
Confidence 999999999999999965
No 138
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.83 E-value=0.0025 Score=62.44 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=62.9
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCH---------------HHHHHHHHHcCCce---EEecc-------ChhhHHHH
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNW---------------RTAHAVAREIGIQD---VMADV-------MPAGKADA 857 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~---------------~~a~~ia~~~gi~~---~~~~~-------~p~~K~~~ 857 (997)
.+.|++.++++.|+++|+++.++|+.+. ..+..+.+.+|+.. ++... ..+.+.++
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~ 106 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGL 106 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 4689999999999999999999999763 45667788899862 22211 12233433
Q ss_pred H----HHHhhcCCEEEEEcCCcCCHHHHhcCCeeE
Q 001906 858 V----RSFQKDGSIVAMVGDGINDSPALAAADVGM 888 (997)
Q Consensus 858 v----~~l~~~g~~v~~vGDg~nD~~al~~A~vgi 888 (997)
+ +.+....+.++||||...|+.+.+++++-.
T Consensus 107 ~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~ 141 (147)
T TIGR01656 107 ILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAA 141 (147)
T ss_pred HHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCE
Confidence 3 333334567999999999999999999753
No 139
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.83 E-value=0.0025 Score=64.72 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=63.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-----C--hhhH----HHHHHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-----M--PAGK----ADAVRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-----~--p~~K----~~~v~~l~~~g~~v~~v 871 (997)
++.|++.+.+++|++.|++++++|+..... ..+..++|+.+.|..+ . ++.+ ..+.+.+......++||
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 163 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFV 163 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEE
Confidence 578999999999999999999999988877 6666668986433221 1 1212 23444444456789999
Q ss_pred cCCcCCHHHHhcCCee
Q 001906 872 GDGINDSPALAAADVG 887 (997)
Q Consensus 872 GDg~nD~~al~~A~vg 887 (997)
||...|+.+.+++++-
T Consensus 164 gD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 164 DDSPAGIEAAKAAGMH 179 (183)
T ss_pred cCCHHHHHHHHHcCCE
Confidence 9999999999999873
No 140
>PLN02811 hydrolase
Probab=96.82 E-value=0.0037 Score=65.86 Aligned_cols=104 Identities=22% Similarity=0.175 Sum_probs=65.1
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHH-HHHHHcCCce----EEecc-------Chhh--HHHHHHHHh---hc
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH-AVAREIGIQD----VMADV-------MPAG--KADAVRSFQ---KD 864 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~-~ia~~~gi~~----~~~~~-------~p~~--K~~~v~~l~---~~ 864 (997)
-++.|++.++|+.|+++|+++.++||....... ...+..++.+ +++.- .|+. =...++.+. -.
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 357899999999999999999999998765433 2333334432 22211 1111 122344443 33
Q ss_pred CCEEEEEcCCcCCHHHHhcCCee---EEecCCcHHHHHhcCEEE
Q 001906 865 GSIVAMVGDGINDSPALAAADVG---MAIGAGTDIAIEAADYVL 905 (997)
Q Consensus 865 g~~v~~vGDg~nD~~al~~A~vg---ia~~~~~~~~~~~ad~vl 905 (997)
.+.++||||+..|+.|.++|++. +..+.........+|.++
T Consensus 157 ~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi 200 (220)
T PLN02811 157 PGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVL 200 (220)
T ss_pred ccceEEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHh
Confidence 47799999999999999999954 333322222233456655
No 141
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.0035 Score=61.46 Aligned_cols=66 Identities=30% Similarity=0.508 Sum_probs=56.4
Q ss_pred CceEEEEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhh
Q 001906 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (997)
Q Consensus 44 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (997)
...+.+|.|+ |+|.+|+..+++.|+..+||.++++++..+.+.|.. ...+.++.+.++.+|-++.+
T Consensus 5 ~~~~~efaV~-M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~t---s~p~s~i~~~le~tGr~Avl 70 (247)
T KOG4656|consen 5 DTYEAEFAVQ-MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVET---SVPPSEIQNTLENTGRDAVL 70 (247)
T ss_pred CceeEEEEEe-chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEc---cCChHHHHHHHHhhChheEE
Confidence 3455677764 899999999999999999999999999999999864 35678999999999987754
No 142
>PLN02957 copper, zinc superoxide dismutase
Probab=96.81 E-value=0.0039 Score=66.01 Aligned_cols=67 Identities=25% Similarity=0.445 Sum_probs=58.8
Q ss_pred ecccccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccC
Q 001906 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSS 199 (997)
Q Consensus 129 ~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~~~~ 199 (997)
++.+.+ +|+|.+|+.++++.+++++||..+.+++..+++.+.|+ ...+++.+.+++.||.+.+....
T Consensus 7 ~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~~~ 73 (238)
T PLN02957 7 LTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIGQG 73 (238)
T ss_pred EEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEecCC
Confidence 446777 79999999999999999999999999999999999984 46888999999999998765543
No 143
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.79 E-value=0.0048 Score=66.06 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=43.1
Q ss_pred hHHHHHHHHhhc----CCEEEEEcCCcCCHHHHhcC--------CeeEEecCCcHHHHHhcCEEEecCChhhHHHHHH
Q 001906 853 GKADAVRSFQKD----GSIVAMVGDGINDSPALAAA--------DVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 853 ~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A--------~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
+|...++.+.++ +..++|+||+.||.+|++.+ ..+|.++.+ ..+..|++++ ++...+...++
T Consensus 167 ~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g--~~~~~A~~~~--~~~~~v~~~L~ 240 (244)
T TIGR00685 167 NKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSG--SKKTVAKFHL--TGPQQVLEFLG 240 (244)
T ss_pred CHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecC--CcCCCceEeC--CCHHHHHHHHH
Confidence 354444444332 34799999999999999988 478888533 2345688888 56777766664
No 144
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.76 E-value=0.0044 Score=58.99 Aligned_cols=81 Identities=10% Similarity=0.133 Sum_probs=60.6
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCC-CHHHHHHHHHHcC-------CceEEecc-----ChhhH--HHHHHHHh--hcC
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGD-NWRTAHAVAREIG-------IQDVMADV-----MPAGK--ADAVRSFQ--KDG 865 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd-~~~~a~~ia~~~g-------i~~~~~~~-----~p~~K--~~~v~~l~--~~g 865 (997)
++.+++.+.++.|+++|+++.++|+. ....+..+.+..+ +..+|..+ .|+.+ ..+++.+. -..
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~~~p 108 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGVLKP 108 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCCCCc
Confidence 57999999999999999999999999 7888888888888 45433332 23322 23444444 455
Q ss_pred CEEEEEcCCcCCHHHHhc
Q 001906 866 SIVAMVGDGINDSPALAA 883 (997)
Q Consensus 866 ~~v~~vGDg~nD~~al~~ 883 (997)
+.++||||...|...++.
T Consensus 109 ~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 109 KSILFVDDRPDNNEEVDY 126 (128)
T ss_pred ceEEEECCCHhHHHHHHh
Confidence 889999999999877653
No 145
>PLN03017 trehalose-phosphatase
Probab=96.70 E-value=0.02 Score=63.70 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=47.6
Q ss_pred HHcCCeEEEEEECCeEEEEEEecC--CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Q 001906 779 EESARTGILVAYDDNLIGVMGIAD--PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 838 (997)
Q Consensus 779 ~~~g~~~i~va~~~~~lG~i~~~d--~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~ 838 (997)
.......+++.+||+++-+..-.+ .+.++..++|++|+ .|+.++++||+.......+..
T Consensus 107 ~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 107 SRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFVK 167 (366)
T ss_pred hcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhhc
Confidence 344456778889999997665434 48899999999999 789999999999888887643
No 146
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.69 E-value=0.0029 Score=65.63 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=62.2
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---------Chhh--HHHHHHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAG--KADAVRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~---------~p~~--K~~~v~~l~~~g~~v~~v 871 (997)
.+.|++.++++.|+++|+++.++|+.... .....+.+|+...|..+ .|+. =..+++.+....+.++||
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 57799999999999999999999986654 57778889986544322 1221 122344444446789999
Q ss_pred cCCc-CCHHHHhcCCee
Q 001906 872 GDGI-NDSPALAAADVG 887 (997)
Q Consensus 872 GDg~-nD~~al~~A~vg 887 (997)
||+. +|+.+.++|++-
T Consensus 184 gD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 184 GDSLRNDYQGARAAGWR 200 (203)
T ss_pred CCCchHHHHHHHHcCCe
Confidence 9997 899999999864
No 147
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.67 E-value=0.0057 Score=65.48 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=44.3
Q ss_pred hHHHHHHHHhhc----CCEEEEEcCCcCCHHHHhcCCeeEEecCCcHH-----HHHhc---C-EEEecCChhhHHHHHH
Q 001906 853 GKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDI-----AIEAA---D-YVLMRNSLEDVIIAID 918 (997)
Q Consensus 853 ~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~-----~~~~a---d-~vl~~~~~~~l~~~i~ 918 (997)
.|...++.++.+ .+.|+++||+-||.+||..++-||.+||+.+. ..+.. . +.-..+.-.+|.+.++
T Consensus 165 ~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL~~~~~~vvV~Na~~e~~~~~~~~~~~~~~iy~a~~~~a~GIlegl~ 243 (247)
T PF05116_consen 165 SKGAALRYLMERWGIPPEQVLVAGDSGNDLEMLEGGDHGVVVGNAQPELLSWLLEKLRQQERIYFAQGPYAAGILEGLQ 243 (247)
T ss_dssp SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHHCCSSEEEE-TTS-HHHHHHHHHCC-TTE--EE-SS-THHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHHcCcCCEEEEcCCCHHHHHHHHHhcccCCceEecCCCCcHHHHHHHH
Confidence 577777777764 34688899999999999999999999998777 22222 2 2333455666776664
No 148
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.64 E-value=0.013 Score=73.32 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=55.7
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHH-HHCCCeEEEEcCCCHHHHHHHHHH
Q 001906 771 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGL-LKMGVRPVMVTGDNWRTAHAVARE 839 (997)
Q Consensus 771 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l-~~~gi~~~i~Tgd~~~~a~~ia~~ 839 (997)
.+.....|.....+.+++.+||+++-.-...-.+.++..+++++| ++.|..++++||+........-..
T Consensus 584 ~~~i~~~y~~~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 584 MEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred HHHHHHHHHhhcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 345566777778899999999999854433446778999999998 777999999999999998877754
No 149
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.61 E-value=0.0055 Score=68.44 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=82.4
Q ss_pred eEEEEEECCeEEEEEEecC--------CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH----cCCceEEec--c
Q 001906 784 TGILVAYDDNLIGVMGIAD--------PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE----IGIQDVMAD--V 849 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d--------~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~----~gi~~~~~~--~ 849 (997)
+++.+--|+++-|-+.-+| ++.+++.++|+.|+++|+.+.++|..+...+..+.++ +|+.+.|.. .
T Consensus 4 k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~ 83 (320)
T TIGR01686 4 KVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSI 83 (320)
T ss_pred EEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEE
Confidence 4555556666655555555 4579999999999999999999999999999999999 998765554 3
Q ss_pred ChhhHHHHHHHH----hhcCCEEEEEcCCcCCHHHHhcCCeeEEe
Q 001906 850 MPAGKADAVRSF----QKDGSIVAMVGDGINDSPALAAADVGMAI 890 (997)
Q Consensus 850 ~p~~K~~~v~~l----~~~g~~v~~vGDg~nD~~al~~A~vgia~ 890 (997)
.++.|.+.++.+ ......++||||...|+.+.+++...+.+
T Consensus 84 ~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~~~~ 128 (320)
T TIGR01686 84 NWGPKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKITLPVKTL 128 (320)
T ss_pred ecCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCCCcc
Confidence 455666554444 33457899999999999999998877644
No 150
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0046 Score=60.61 Aligned_cols=63 Identities=32% Similarity=0.670 Sum_probs=55.6
Q ss_pred ecccccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 001906 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (997)
Q Consensus 129 ~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~ 195 (997)
+.+|.| .|+|.+|++.+++.|+.++||.++++++..+.+.|.- .....+|.+.|+..|-++.+
T Consensus 8 ~~efaV-~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~t---s~p~s~i~~~le~tGr~Avl 70 (247)
T KOG4656|consen 8 EAEFAV-QMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVET---SVPPSEIQNTLENTGRDAVL 70 (247)
T ss_pred eEEEEE-echhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEc---cCChHHHHHHHHhhChheEE
Confidence 456666 4999999999999999999999999999999999984 35689999999999998754
No 151
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.47 E-value=0.0062 Score=60.41 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=62.8
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCC---------------CHHHHHHHHHHcCCc--eEE-e-----ccC--hhhHHHH
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGD---------------NWRTAHAVAREIGIQ--DVM-A-----DVM--PAGKADA 857 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd---------------~~~~a~~ia~~~gi~--~~~-~-----~~~--p~~K~~~ 857 (997)
++.|++.+++++|+++|++++++|.. ....+..+.+.+|+. .++ + .-. .+.|..+
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~ 108 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKL 108 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 46689999999999999999999985 245677888888886 222 2 111 1233444
Q ss_pred HHHHhh----cCCEEEEEcCCcCCHHHHhcCCeeEE
Q 001906 858 VRSFQK----DGSIVAMVGDGINDSPALAAADVGMA 889 (997)
Q Consensus 858 v~~l~~----~g~~v~~vGDg~nD~~al~~A~vgia 889 (997)
+..+.+ ..+.+.||||+.+|+.+.+++++...
T Consensus 109 ~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i 144 (161)
T TIGR01261 109 LEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGI 144 (161)
T ss_pred HHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEE
Confidence 444332 34579999999999999999997633
No 152
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.0072 Score=51.10 Aligned_cols=53 Identities=19% Similarity=0.409 Sum_probs=48.9
Q ss_pred CCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcC
Q 001906 135 GGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAG 190 (997)
Q Consensus 135 ~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~G 190 (997)
-.|+|.+|..++++.++.++||.++.++...+++++.-+ .++..+.+.+++.|
T Consensus 11 v~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 11 VNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred ECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 379999999999999999999999999999999999965 67899999999876
No 153
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.45 E-value=0.011 Score=66.14 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=64.3
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCC---------------CHHHHHHHHHHcCCc--eEEec------c--ChhhHHH
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGD---------------NWRTAHAVAREIGIQ--DVMAD------V--MPAGKAD 856 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd---------------~~~~a~~ia~~~gi~--~~~~~------~--~p~~K~~ 856 (997)
-.+.|++.+++++|+++|++++++|+. ....+..+.+..|+. .++.. - ..+.|..
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~i~~~~~sd~~~~rKP~p~ 108 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPKTG 108 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEEEeCCcCcccCCCCCCCHH
Confidence 467899999999999999999999984 244567778888875 22211 0 1234454
Q ss_pred HHHHHhh----cCCEEEEEcCCcCCHHHHhcCCeeEE
Q 001906 857 AVRSFQK----DGSIVAMVGDGINDSPALAAADVGMA 889 (997)
Q Consensus 857 ~v~~l~~----~g~~v~~vGDg~nD~~al~~A~vgia 889 (997)
++..+.+ ..+.++||||+.+|..+.+.|++-..
T Consensus 109 ~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I 145 (354)
T PRK05446 109 LVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGI 145 (354)
T ss_pred HHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEE
Confidence 5554433 34789999999999999999997633
No 154
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.42 E-value=0.02 Score=61.17 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=70.6
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHH--HHHHHcCCce-EEecc-Chhh-HHHH
Q 001906 783 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH--AVAREIGIQD-VMADV-MPAG-KADA 857 (997)
Q Consensus 783 ~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~--~ia~~~gi~~-~~~~~-~p~~-K~~~ 857 (997)
++.+.+..|+.+. -.+.+.|++.+++++|+++|+++.++|+....... ...+++|+.. .+..+ ++.+ ....
T Consensus 8 ~~~~~~D~dG~l~----~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~~~ 83 (242)
T TIGR01459 8 YDVFLLDLWGVII----DGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAVQM 83 (242)
T ss_pred CCEEEEecccccc----cCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHHHH
Confidence 5556666666543 46778999999999999999999999997665544 6778999976 55553 3332 1233
Q ss_pred HHHH-hh---cCCEEEEEcCCcCCHHHHhcCCe
Q 001906 858 VRSF-QK---DGSIVAMVGDGINDSPALAAADV 886 (997)
Q Consensus 858 v~~l-~~---~g~~v~~vGDg~nD~~al~~A~v 886 (997)
+... ++ .+..+.++||+.+|...+...+.
T Consensus 84 l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 84 ILESKKRFDIRNGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred HHhhhhhccCCCceEEEeCCcccchhhhcCCCc
Confidence 3332 22 35679999999999998865543
No 155
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=96.37 E-value=0.013 Score=61.17 Aligned_cols=90 Identities=10% Similarity=0.151 Sum_probs=67.1
Q ss_pred ecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc---CC----ceEEecc---ChhhH--HHHHHHHhhcCCE
Q 001906 800 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREI---GI----QDVMADV---MPAGK--ADAVRSFQKDGSI 867 (997)
Q Consensus 800 ~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~---gi----~~~~~~~---~p~~K--~~~v~~l~~~g~~ 867 (997)
++-++.|++.+++++|+++|+++.++|..+......+.+.. ++ +.+|... .|+.. ..+++.+....+.
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 45679999999999999999999999999888777777665 33 2333321 12221 3355555555678
Q ss_pred EEEEcCCcCCHHHHhcCCeeEE
Q 001906 868 VAMVGDGINDSPALAAADVGMA 889 (997)
Q Consensus 868 v~~vGDg~nD~~al~~A~vgia 889 (997)
++||||...|+.|.++|++-..
T Consensus 172 ~lfVgDs~~Di~AA~~AG~~ti 193 (220)
T TIGR01691 172 ILFLSDIINELDAARKAGLHTG 193 (220)
T ss_pred EEEEeCCHHHHHHHHHcCCEEE
Confidence 9999999999999999997643
No 156
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.30 E-value=0.0075 Score=59.45 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=59.3
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec------cChhhHHHHH----HHHhhcCCEEEEEc
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD------VMPAGKADAV----RSFQKDGSIVAMVG 872 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~------~~p~~K~~~v----~~l~~~g~~v~~vG 872 (997)
...+++.+.++.|+++|+++.++|+.....+....+.. +...|.. ..++.+.+.+ +.+.... .++|||
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~iG 141 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLHVG 141 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEEEe
Confidence 34579999999999999999999999999998888885 4433322 1122233333 3333335 799999
Q ss_pred CCcCCHHHHhcCC
Q 001906 873 DGINDSPALAAAD 885 (997)
Q Consensus 873 Dg~nD~~al~~A~ 885 (997)
|..+|+.+.++|+
T Consensus 142 Ds~~Di~aa~~aG 154 (154)
T TIGR01549 142 DNLNDIEGARNAG 154 (154)
T ss_pred CCHHHHHHHHHcc
Confidence 9999999988875
No 157
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=96.29 E-value=0.021 Score=56.43 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=85.7
Q ss_pred HHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCC--eEEEEcCC-------CHHHHHHHHHHcCCceE-Ee
Q 001906 778 LEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGV--RPVMVTGD-------NWRTAHAVAREIGIQDV-MA 847 (997)
Q Consensus 778 ~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi--~~~i~Tgd-------~~~~a~~ia~~~gi~~~-~~ 847 (997)
+.+.|.+.+.+..|+++.. --++.+.++..+.+++|++.+. ++.++|.. +...|..+.+.+|+.-+ +.
T Consensus 36 Lk~~Gik~li~DkDNTL~~--~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTP--PYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred hhhcCceEEEEcCCCCCCC--CCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeC
Confidence 5677888888888887543 2478899999999999999976 49999987 48899999999999754 44
Q ss_pred ccChhhHHHHHHHHhhc-----CCEEEEEcCC-cCCHHHHhcCC
Q 001906 848 DVMPAGKADAVRSFQKD-----GSIVAMVGDG-INDSPALAAAD 885 (997)
Q Consensus 848 ~~~p~~K~~~v~~l~~~-----g~~v~~vGDg-~nD~~al~~A~ 885 (997)
.-.|....++++.++.. .+.++||||- ..|+-+-...+
T Consensus 114 ~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G 157 (168)
T PF09419_consen 114 AKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMG 157 (168)
T ss_pred CCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccC
Confidence 55787777888888765 6789999998 56887776665
No 158
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.27 E-value=0.0077 Score=63.45 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCc----eEEeccChh--hHHHHHHHHhh----cCCEEEEEcCCcCCHHHHhcCCeeEEe
Q 001906 830 WRTAHAVAREIGIQ----DVMADVMPA--GKADAVRSFQK----DGSIVAMVGDGINDSPALAAADVGMAI 890 (997)
Q Consensus 830 ~~~a~~ia~~~gi~----~~~~~~~p~--~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~vgia~ 890 (997)
........++.++. ..+.++.|. .|...++.+.+ ..+.|+++||+.||.+||+.|+.|+|+
T Consensus 150 ~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 150 MPRFTALLADLGLAIVQGNRFSHVLGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred HHHHHHHHHHcCCeEEecCCeeEEecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 33344444555664 334455543 47776666543 356799999999999999999999986
No 159
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.017 Score=48.82 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=49.5
Q ss_pred EEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcC
Q 001906 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG 108 (997)
Q Consensus 50 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 108 (997)
...-.|||.+|+..|++.++.++||..+.++...+++++.-+ .++..+.+.+.+.|
T Consensus 8 v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 8 VLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred EEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 445589999999999999999999999999999999999754 67888999888866
No 160
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=96.09 E-value=0.015 Score=60.83 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=63.6
Q ss_pred CCcHhHHHHHHHH--HHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec--------------------------cCh-hh
Q 001906 803 PVKREAAVVVEGL--LKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD--------------------------VMP-AG 853 (997)
Q Consensus 803 ~~~~~~~~~i~~l--~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~--------------------------~~p-~~ 853 (997)
++.|+.+++++.+ ++.|+.+.++|.-+......+.+.-|+...|.+ +.| --
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmC 150 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMC 150 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccc
Confidence 6779999999999 457999999999999999999999999732211 222 25
Q ss_pred HHHHHHHHhhc----C---CEEEEEcCCcCCHHH
Q 001906 854 KADAVRSFQKD----G---SIVAMVGDGINDSPA 880 (997)
Q Consensus 854 K~~~v~~l~~~----g---~~v~~vGDg~nD~~a 880 (997)
|..+++.++.. | .+|.+||||.||.-.
T Consensus 151 K~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp 184 (234)
T PF06888_consen 151 KGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCP 184 (234)
T ss_pred hHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCc
Confidence 89999988875 4 789999999999653
No 161
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.08 E-value=0.015 Score=75.05 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=78.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-eEEecc---------Chhh--HHHHHHHHhhcCCEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-DVMADV---------MPAG--KADAVRSFQKDGSIVAM 870 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~-~~~~~~---------~p~~--K~~~v~~l~~~g~~v~~ 870 (997)
.+.|++.+.+++|+++|+++.++|+.....+..+.+.+|+. ..|..+ .|+. =...++.+....+.++|
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 36799999999999999999999999999999999999985 322211 2222 13345555555678999
Q ss_pred EcCCcCCHHHHhcCCee-EEe--cCC-cHHHHHhcCEEEecCChhhH
Q 001906 871 VGDGINDSPALAAADVG-MAI--GAG-TDIAIEAADYVLMRNSLEDV 913 (997)
Q Consensus 871 vGDg~nD~~al~~A~vg-ia~--~~~-~~~~~~~ad~vl~~~~~~~l 913 (997)
|||..+|+.+.++|++- |.+ +.. .+.....+|+++ +++..+
T Consensus 241 IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi--~~l~el 285 (1057)
T PLN02919 241 IEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIR--KDIGNI 285 (1057)
T ss_pred EcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEE--CChHHC
Confidence 99999999999999963 333 322 233334677777 556554
No 162
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=96.06 E-value=0.038 Score=54.54 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=64.3
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHH---HHHHH-----cCCc--eEEe--------------ccChhh-HH
Q 001906 801 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH---AVARE-----IGIQ--DVMA--------------DVMPAG-KA 855 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~---~ia~~-----~gi~--~~~~--------------~~~p~~-K~ 855 (997)
++.+.+++.+++++++++|++++++||++...+. ...++ .++. .++. .-.|+. |.
T Consensus 25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~ 104 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKI 104 (157)
T ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHH
Confidence 4678899999999999999999999999988874 55555 2343 2221 112333 77
Q ss_pred HHHHHHhh-----cCCEEEEEcCCcCCHHHHhcCCee
Q 001906 856 DAVRSFQK-----DGSIVAMVGDGINDSPALAAADVG 887 (997)
Q Consensus 856 ~~v~~l~~-----~g~~v~~vGDg~nD~~al~~A~vg 887 (997)
+.++.+.+ ....++.+||+.+|+.+-+++++.
T Consensus 105 ~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 105 ACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 77877776 335567799999999999988764
No 163
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.00 E-value=0.0068 Score=59.37 Aligned_cols=89 Identities=11% Similarity=-0.050 Sum_probs=66.9
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-EEecc-----ChhhHHHH---HHHHhhcCCEEEEE
Q 001906 801 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-VMADV-----MPAGKADA---VRSFQKDGSIVAMV 871 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~-~~~~~-----~p~~K~~~---v~~l~~~g~~v~~v 871 (997)
.-.++|++.+.++.|+ .++++.++|+-+...+..+.+.+++.. ++..+ ....|..+ ++.+....+.++||
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i 121 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIII 121 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEE
Confidence 3357999999999999 579999999999999999999999854 22321 11123233 34444456789999
Q ss_pred cCCcCCHHHHhcCCeeEEe
Q 001906 872 GDGINDSPALAAADVGMAI 890 (997)
Q Consensus 872 GDg~nD~~al~~A~vgia~ 890 (997)
||..+|..+-+++++-|..
T Consensus 122 ~Ds~~~~~aa~~ngI~i~~ 140 (148)
T smart00577 122 DDSPDSWPFHPENLIPIKP 140 (148)
T ss_pred ECCHHHhhcCccCEEEecC
Confidence 9999999998888776654
No 164
>PRK10444 UMP phosphatase; Provisional
Probab=95.86 E-value=0.042 Score=58.73 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=38.7
Q ss_pred EEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH---cCC
Q 001906 796 GVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE---IGI 842 (997)
Q Consensus 796 G~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~---~gi 842 (997)
|++.-.+.+-|++.+++++|+++|++++++||+...+...++++ +|+
T Consensus 10 GtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 10 GVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred CceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 33444678889999999999999999999999998877777766 466
No 165
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=95.86 E-value=0.0081 Score=63.26 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=64.4
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec-c-C------hhhHHH----HHHHHhhcCCEEE
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-V-M------PAGKAD----AVRSFQKDGSIVA 869 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~-~-~------p~~K~~----~v~~l~~~g~~v~ 869 (997)
-++.|++.++++.| ++++.++|+.+...+....+.+|+...|.. + + ++.+.+ +.+.+....+.++
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 45678999999998 489999999998889999999999765532 1 1 112233 3334433456799
Q ss_pred EEcCCcCCHHHHhcCCeeEEe
Q 001906 870 MVGDGINDSPALAAADVGMAI 890 (997)
Q Consensus 870 ~vGDg~nD~~al~~A~vgia~ 890 (997)
||||..+|+.+.++|++...+
T Consensus 164 ~igDs~~di~aA~~aG~~~i~ 184 (221)
T PRK10563 164 LVDDSSAGAQSGIAAGMEVFY 184 (221)
T ss_pred EEeCcHhhHHHHHHCCCEEEE
Confidence 999999999999999987653
No 166
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.69 E-value=0.016 Score=60.48 Aligned_cols=86 Identities=12% Similarity=0.073 Sum_probs=58.5
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHH--HHHHHHHcCCc----eEEec-----cChhhH--HHHHHHHhhcCCEE
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRT--AHAVAREIGIQ----DVMAD-----VMPAGK--ADAVRSFQKDGSIV 868 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~--a~~ia~~~gi~----~~~~~-----~~p~~K--~~~v~~l~~~g~~v 868 (997)
-++.|++.+++++|+++|++++++|+..... ........++. .++.. ..|+.. ..+++.+....+.+
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~ 172 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEEC 172 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 3578999999999999999999999875432 33333334543 33321 123222 23344444455779
Q ss_pred EEEcCCcCCHHHHhcCCee
Q 001906 869 AMVGDGINDSPALAAADVG 887 (997)
Q Consensus 869 ~~vGDg~nD~~al~~A~vg 887 (997)
+||||...|+.+.++|++-
T Consensus 173 l~i~D~~~di~aA~~aG~~ 191 (211)
T TIGR02247 173 VFLDDLGSNLKPAAALGIT 191 (211)
T ss_pred EEEcCCHHHHHHHHHcCCE
Confidence 9999999999999999975
No 167
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.68 E-value=0.025 Score=58.49 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=59.8
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH-cCCce----EEec-c--ChhhHH----HHHHHHhhcCCEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE-IGIQD----VMAD-V--MPAGKA----DAVRSFQKDGSIVAM 870 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~-~gi~~----~~~~-~--~p~~K~----~~v~~l~~~g~~v~~ 870 (997)
++.|++.+++++|+++|+++.++|+.+.......... .++.. ++.. - ..+.+. .+++.+....+.++|
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 4689999999999999999999999877665543322 34432 2221 1 112223 344445445678999
Q ss_pred EcCCcCCHHHHhcCCee
Q 001906 871 VGDGINDSPALAAADVG 887 (997)
Q Consensus 871 vGDg~nD~~al~~A~vg 887 (997)
|||...|+.+.+++++.
T Consensus 164 vgD~~~di~aA~~aG~~ 180 (199)
T PRK09456 164 FDDNADNIEAANALGIT 180 (199)
T ss_pred eCCCHHHHHHHHHcCCE
Confidence 99999999999999975
No 168
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.63 E-value=0.085 Score=56.86 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=39.7
Q ss_pred EEEEEECCeEEEEEEecCC----CcHhHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHcCCc
Q 001906 785 GILVAYDDNLIGVMGIADP----VKREAAVVVEGLLKMGVRPVMVTGDNWRT---AHAVAREIGIQ 843 (997)
Q Consensus 785 ~i~va~~~~~lG~i~~~d~----~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~---a~~ia~~~gi~ 843 (997)
.+.+-.||++. -.+. +-|++.++|++||++|++++++||++..+ .....+.+|++
T Consensus 3 ~i~~D~DGtl~----~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 3 GVLLDISGVLY----ISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred EEEEeCCCeEE----eCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 34455555554 3455 78899999999999999999999976664 44455667764
No 169
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.60 E-value=0.049 Score=58.38 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=60.7
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHH---HHHHHHHHcCCc-----eEEeccChhhHHHHHHHHhhcCCEEEEEc
Q 001906 801 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWR---TAHAVAREIGIQ-----DVMADVMPAGKADAVRSFQKDGSIVAMVG 872 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~---~a~~ia~~~gi~-----~~~~~~~p~~K~~~v~~l~~~g~~v~~vG 872 (997)
..++-|++.+.++.|+++|+++.++|++... .+....+..|+. .++.+-....|..-.+.+.+....+++||
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~Ivl~vG 195 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEIVLLFG 195 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCEEEEEC
Confidence 3457799999999999999999999998743 345666788985 34444233456666666666666799999
Q ss_pred CCcCCHHHH
Q 001906 873 DGINDSPAL 881 (997)
Q Consensus 873 Dg~nD~~al 881 (997)
|..+|....
T Consensus 196 D~~~Df~~~ 204 (266)
T TIGR01533 196 DNLLDFDDF 204 (266)
T ss_pred CCHHHhhhh
Confidence 999998654
No 170
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.59 E-value=0.073 Score=53.46 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=44.6
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 001906 784 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 843 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~ 843 (997)
.+|+...|+++++ -+.+- ..+.+.+..|+++|++++.+|......-..+-+.+|+.
T Consensus 8 ~lIFtDlD~TLl~-~~ye~---~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 8 LLIFTDLDGTLLP-HSYEW---QPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred eEEEEcccCcccC-CCCCC---CccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 3556666778777 22222 34678899999999999999999999999999999985
No 171
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=95.27 E-value=0.031 Score=57.09 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=61.5
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC-------hhhHH----HHHHHHhhcCCEEEEEc
Q 001906 804 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM-------PAGKA----DAVRSFQKDGSIVAMVG 872 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~-------p~~K~----~~v~~l~~~g~~v~~vG 872 (997)
+.|+ .+.++.|++. +++.++||.....+....+.+|+..+|..+. ++.+. ..++.+....+.+++||
T Consensus 89 ~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ig 166 (188)
T PRK10725 89 PLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFE 166 (188)
T ss_pred CccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEe
Confidence 3454 6899999875 8999999999999999999999976544321 11222 23444444456799999
Q ss_pred CCcCCHHHHhcCCee
Q 001906 873 DGINDSPALAAADVG 887 (997)
Q Consensus 873 Dg~nD~~al~~A~vg 887 (997)
|..+|+.+.++|++-
T Consensus 167 Ds~~di~aA~~aG~~ 181 (188)
T PRK10725 167 DADFGIQAARAAGMD 181 (188)
T ss_pred ccHhhHHHHHHCCCE
Confidence 999999999999965
No 172
>PLN02151 trehalose-phosphatase
Probab=95.22 E-value=0.16 Score=56.45 Aligned_cols=58 Identities=17% Similarity=0.266 Sum_probs=44.7
Q ss_pred HcCCeEEEEEECCeEEEEEEecC--CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Q 001906 780 ESARTGILVAYDDNLIGVMGIAD--PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 838 (997)
Q Consensus 780 ~~g~~~i~va~~~~~lG~i~~~d--~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~ 838 (997)
....+.+++.|||+++-+..--+ .+.++++++|+.|.+ +..++++||++......+..
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred cCCceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHcC
Confidence 33456788899999986554433 367999999999994 57999999998887766653
No 173
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=95.18 E-value=0.047 Score=55.61 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=63.2
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc-------------ChhhH--HHHHHHHhhcCCE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV-------------MPAGK--ADAVRSFQKDGSI 867 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~-------------~p~~K--~~~v~~l~~~g~~ 867 (997)
++.+++.+++++|+ .+++++|+.+...+..+.+.+|+..+|..+ .|+.. ..+++.+....+.
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 160 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPER 160 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccc
Confidence 47799999999998 478999999999999999999996433211 22211 2344555555678
Q ss_pred EEEEcCCcCCHHHHhcCCeeE
Q 001906 868 VAMVGDGINDSPALAAADVGM 888 (997)
Q Consensus 868 v~~vGDg~nD~~al~~A~vgi 888 (997)
++||||...|+.+.++|++..
T Consensus 161 ~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 161 AIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred eEEEeCCHHHHHHHHHcCCEE
Confidence 999999999999999998753
No 174
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.14 E-value=0.037 Score=59.00 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=68.4
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC-------hhhHHHH----HHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM-------PAGKADA----VRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~-------p~~K~~~----v~~l~~~g~~v~~v 871 (997)
.+.|++.++++.|++. +++.++|+.+.. .+..|+..+|..+. .+.+.++ ++.+....+.++||
T Consensus 113 ~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~V 186 (238)
T PRK10748 113 DVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHV 186 (238)
T ss_pred CCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEE
Confidence 5679999999999975 899999986654 26678765433221 1223333 34444446789999
Q ss_pred cCC-cCCHHHHhcCCeeEEecCC--cHH-----HHHhcCEEEecCChhhHHHH
Q 001906 872 GDG-INDSPALAAADVGMAIGAG--TDI-----AIEAADYVLMRNSLEDVIIA 916 (997)
Q Consensus 872 GDg-~nD~~al~~A~vgia~~~~--~~~-----~~~~ad~vl~~~~~~~l~~~ 916 (997)
||. ..|+.+.++|++-..+.+. ... .....|..+ +++..+.++
T Consensus 187 GD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i--~~l~el~~~ 237 (238)
T PRK10748 187 GDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEI--SRLASLTSL 237 (238)
T ss_pred cCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEE--CCHHHHHhh
Confidence 999 5999999999977555422 111 112355655 556666554
No 175
>PHA02597 30.2 hypothetical protein; Provisional
Probab=94.88 E-value=0.05 Score=56.06 Aligned_cols=83 Identities=17% Similarity=0.093 Sum_probs=55.9
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE---------eccChhhHHHHHHHH-hhc-CCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM---------ADVMPAGKADAVRSF-QKD-GSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~---------~~~~p~~K~~~v~~l-~~~-g~~v~~v 871 (997)
.+.|++.+++++|++.+ +.+++|..+........+.+|+...| ++.. ..|.+++... ++. .+.++||
T Consensus 74 ~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~-~~kp~~~~~a~~~~~~~~~v~v 151 (197)
T PHA02597 74 SAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHD-ESKEKLFIKAKEKYGDRVVCFV 151 (197)
T ss_pred cCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccC-cccHHHHHHHHHHhCCCcEEEe
Confidence 47899999999999975 56777776555555566677664321 2211 2244433332 222 3468899
Q ss_pred cCCcCCHHHHhcC--Cee
Q 001906 872 GDGINDSPALAAA--DVG 887 (997)
Q Consensus 872 GDg~nD~~al~~A--~vg 887 (997)
||..+|+.+.++| |+-
T Consensus 152 gDs~~di~aA~~a~~Gi~ 169 (197)
T PHA02597 152 DDLAHNLDAAHEALSQLP 169 (197)
T ss_pred CCCHHHHHHHHHHHcCCc
Confidence 9999999999999 975
No 176
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=94.81 E-value=0.19 Score=53.97 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=44.2
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcCCc
Q 001906 784 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTG---DNWRTAHAVAREIGIQ 843 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tg---d~~~~a~~ia~~~gi~ 843 (997)
+.+++..||++.- .+.+-+++.++|++|+++|++++++|| ++........+.+|++
T Consensus 2 ~~~~~D~DGtl~~----~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 2 KGYLIDLDGTMYK----GKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred CEEEEeCCCceEc----CCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 3556666666653 466667999999999999999999996 6777778888888875
No 177
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.26 E-value=0.2 Score=52.83 Aligned_cols=114 Identities=24% Similarity=0.260 Sum_probs=77.4
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---------ChhhH--HHHHHHHhhcCCEEEE
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAGK--ADAVRSFQKDGSIVAM 870 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~---------~p~~K--~~~v~~l~~~g~~v~~ 870 (997)
-++.+++.++++.|++. ++++++|.-.........+++|+.++|..+ .|+.+ ..+.+.+....+.++|
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence 46779999999999998 999999998888999999999987654433 34333 2344445445678999
Q ss_pred EcCC-cCCHHHHhcCCee-EEecCCc---HHHHHhcCEEEecCChhhHHHHHH
Q 001906 871 VGDG-INDSPALAAADVG-MAIGAGT---DIAIEAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 871 vGDg-~nD~~al~~A~vg-ia~~~~~---~~~~~~ad~vl~~~~~~~l~~~i~ 918 (997)
|||. .||+...+++|.- |-+.... .......|..+ .++..+..++.
T Consensus 177 VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i--~~l~~l~~~~~ 227 (229)
T COG1011 177 VGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEI--SSLAELLDLLE 227 (229)
T ss_pred ECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEE--cCHHHHHHHHh
Confidence 9997 6675777778764 3333211 11114456555 55666666554
No 178
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=94.12 E-value=0.27 Score=51.26 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=57.8
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHcCCce---EEecc-Chhh------HHHHHHHHhhcCC-
Q 001906 801 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRT---AHAVAREIGIQD---VMADV-MPAG------KADAVRSFQKDGS- 866 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~---a~~ia~~~gi~~---~~~~~-~p~~------K~~~v~~l~~~g~- 866 (997)
.-+.-|++.++++.|+++|++++++||+.... +..-.++.|++. .+-|- .... |...-+.+.++|.
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYr 197 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYR 197 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCce
Confidence 34677999999999999999999999999766 555556778864 23221 1112 6666667777765
Q ss_pred EEEEEcCCcCCHH
Q 001906 867 IVAMVGDGINDSP 879 (997)
Q Consensus 867 ~v~~vGDg~nD~~ 879 (997)
.++.+||..+|..
T Consensus 198 Iv~~iGDq~sDl~ 210 (229)
T TIGR01675 198 IWGNIGDQWSDLL 210 (229)
T ss_pred EEEEECCChHHhc
Confidence 5788999999973
No 179
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=94.10 E-value=0.18 Score=53.06 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=72.2
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC-----------hhhHHHHHHHHhhcCCEEE
Q 001906 801 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM-----------PAGKADAVRSFQKDGSIVA 869 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~-----------p~~K~~~v~~l~~~g~~v~ 869 (997)
..++.|++.+.+++|+++|+.+.+.|+.....+..+.+.+|+.++|...- |+-=....+.|.-....++
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 35788999999999999999999999999999999999999987666421 2222345555555778899
Q ss_pred EEcCCcCCHHHHhcCCee
Q 001906 870 MVGDGINDSPALAAADVG 887 (997)
Q Consensus 870 ~vGDg~nD~~al~~A~vg 887 (997)
.|.|..|.+.|.++|+.-
T Consensus 164 viEDs~~Gi~Aa~aAGm~ 181 (221)
T COG0637 164 VVEDSPAGIQAAKAAGMR 181 (221)
T ss_pred EEecchhHHHHHHHCCCE
Confidence 999999999999999954
No 180
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.07 E-value=0.15 Score=51.35 Aligned_cols=89 Identities=21% Similarity=0.357 Sum_probs=66.2
Q ss_pred CCCcHhHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHcCCceEEec--------------------------cChh--
Q 001906 802 DPVKREAAVVVEGLLKMGV-RPVMVTGDNWRTAHAVAREIGIQDVMAD--------------------------VMPA-- 852 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi-~~~i~Tgd~~~~a~~ia~~~gi~~~~~~--------------------------~~p~-- 852 (997)
=++-|+..++|+.+++.|- .+.++|--|......+.+..|+...|++ +.|.
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNm 162 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNM 162 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhh
Confidence 3678999999999999996 8999999999999999999999643322 1232
Q ss_pred hHHHHHHHHhhcC-------CEEEEEcCCcCCH-HHHhcCCeeEEe
Q 001906 853 GKADAVRSFQKDG-------SIVAMVGDGINDS-PALAAADVGMAI 890 (997)
Q Consensus 853 ~K~~~v~~l~~~g-------~~v~~vGDg~nD~-~al~~A~vgia~ 890 (997)
-|..++..++..+ +++.++|||.||. |+++...--++|
T Consensus 163 CKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~am 208 (256)
T KOG3120|consen 163 CKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAM 208 (256)
T ss_pred hhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceec
Confidence 3777777776542 3799999999995 444444333444
No 181
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=93.79 E-value=0.054 Score=49.06 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=53.0
Q ss_pred EEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHcCCceEEecc-ChhhHHHHHHHHhh--cCCEEEEE
Q 001906 798 MGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA---REIGIQDVMADV-MPAGKADAVRSFQK--DGSIVAMV 871 (997)
Q Consensus 798 i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia---~~~gi~~~~~~~-~p~~K~~~v~~l~~--~g~~v~~v 871 (997)
+...+.+-|++.++|++|+++|++++++|+....+...++ +.+|+.--..++ +|. ....+.+++ .+.+|..+
T Consensus 9 l~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~--~~~~~~l~~~~~~~~v~vl 86 (101)
T PF13344_consen 9 LYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSG--MAAAEYLKEHKGGKKVYVL 86 (101)
T ss_dssp SEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHH--HHHHHHHHHHTTSSEEEEE
T ss_pred eEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChH--HHHHHHHHhcCCCCEEEEE
Confidence 3447788899999999999999999999998755544444 667885211111 111 223444444 57889999
Q ss_pred cCCcCCHHHHhcCC
Q 001906 872 GDGINDSPALAAAD 885 (997)
Q Consensus 872 GDg~nD~~al~~A~ 885 (997)
|.. .....++.++
T Consensus 87 G~~-~l~~~l~~~G 99 (101)
T PF13344_consen 87 GSD-GLREELREAG 99 (101)
T ss_dssp S-H-HHHHHHHHTT
T ss_pred cCH-HHHHHHHHcC
Confidence 976 4555555554
No 182
>PLN02645 phosphoglycolate phosphatase
Probab=93.55 E-value=0.11 Score=57.83 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=69.8
Q ss_pred CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHcCCceEEecc-Chhh-HHH
Q 001906 782 ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA---REIGIQDVMADV-MPAG-KAD 856 (997)
Q Consensus 782 g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia---~~~gi~~~~~~~-~p~~-K~~ 856 (997)
.++.+.+-.||++.- .+.+-|++.++|++||++|++++++|++...+...++ +++|+.....++ ++.. ...
T Consensus 27 ~~~~~~~D~DGtl~~----~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~ 102 (311)
T PLN02645 27 SVETFIFDCDGVIWK----GDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAA 102 (311)
T ss_pred hCCEEEEeCcCCeEe----CCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHH
Confidence 367888888887754 4667799999999999999999999999966666665 668875322222 1211 122
Q ss_pred HHHHHhh-cCCEEEEEcCCcCCHHHHhcCCeeEEec
Q 001906 857 AVRSFQK-DGSIVAMVGDGINDSPALAAADVGMAIG 891 (997)
Q Consensus 857 ~v~~l~~-~g~~v~~vGDg~nD~~al~~A~vgia~~ 891 (997)
.++.... .++. +++++...|...++.+++-..-|
T Consensus 103 ~l~~~~~~~~~~-V~viG~~~~~~~l~~~Gi~~~~g 137 (311)
T PLN02645 103 YLKSINFPKDKK-VYVIGEEGILEELELAGFQYLGG 137 (311)
T ss_pred HHHhhccCCCCE-EEEEcCHHHHHHHHHCCCEEecC
Confidence 2322221 1344 55555678999999998765433
No 183
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=92.18 E-value=1.4 Score=57.71 Aligned_cols=202 Identities=17% Similarity=0.216 Sum_probs=104.2
Q ss_pred CceEEEEEeCCCCch----hhHHHHHHhhcCCCCeeEEEEEeeccEEEE--EECCCCcchH----HHHHHHHhcCc--ch
Q 001906 44 GMRRIQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALLQNKADV--VFDPDLVKDE----DIKNAIEDAGF--EA 111 (997)
Q Consensus 44 ~~~~~~~~v~gm~C~----~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v--~~~~~~~~~~----~i~~~i~~~Gy--~~ 111 (997)
..-.+...-+|.+-. .-...+|++++.++|+++++..-..+...+ .++.+ .+.+ ++++++...-- ..
T Consensus 41 p~i~V~~~~pgas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~-~d~~~a~~~v~~~i~~~~~~LP~ 119 (1021)
T PF00873_consen 41 PQISVTTSYPGASPEEVEQLVTKPLEEALSSVEGVKEIRSTSREGSSSITVEFDDG-TDIDEALQEVREKIDQIRSDLPP 119 (1021)
T ss_dssp SEEEEEEE-TTS-HHHHHHHTHHHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTT-S-HHHHHHHHHHHHHHHGGGS-H
T ss_pred cceEEEEecCcCCHHHHHHHHHHHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccc-cCHHHHHHHHHHHHHhhhhhCcc
Confidence 344555666776643 345678899999999999988766665554 45543 3333 55556665421 11
Q ss_pred hhhcccCCC-CCCCCcceecccccC--CccC----hhhHHHHHHhhhcCCCceeEEeec-CCCeEEEEeCCC-----CCC
Q 001906 112 EILAESSTS-GPKPQGTIVGQYTIG--GMTC----AACVNSVEGILRGLPGVKRAVVAL-ATSLGEVEYDPT-----VIS 178 (997)
Q Consensus 112 ~~~~~~~~~-~~~~~~~~~~~l~i~--gm~C----~~C~~~ie~~l~~~~GV~~v~v~~-~~~~~~v~~d~~-----~~~ 178 (997)
..-.+.-.. .........+.+.-+ +++- ....+.++..|++++||.++++.= ..+.+.|..||. .++
T Consensus 120 ~~~~p~i~~~~~~~~~i~~~~l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls 199 (1021)
T PF00873_consen 120 GVEEPQIFKFDPSDSPIMILALTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLS 199 (1021)
T ss_dssp HHHHHEEEEEEEECCEEEEEEEEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--
T ss_pred cccCCceeeccCCCceeEEEEeccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCC
Confidence 110000000 000111122222222 1221 123467899999999999999764 566889999985 368
Q ss_pred HHHHHHHHHhcCCceeeec-cCCccceeeeecCccchhhhHHHHhhhh--------cCCCceEEEeecCCCeEEEEecC
Q 001906 179 KDDIANAIEDAGFEASFVQ-SSGQDKILLQVTGVLCELDAHFLEGILS--------NFKGVRQFRFDKISGELEVLFDP 248 (997)
Q Consensus 179 ~~~i~~~i~~~Gy~~~~~~-~~~~~~~~l~v~gm~c~~ca~~ie~~l~--------~~~GV~~~~vn~~~~~~~V~~d~ 248 (997)
..++.++|.+.......-. ..+..+..++..|... ..+.+++..- ++..|.+++..........+++.
T Consensus 200 ~~~v~~~l~~~n~~~~~G~~~~~~~~~~i~~~~~~~--~~~~l~~~~i~~~~g~~i~L~dvA~V~~~~~~~~~~~~~nG 276 (1021)
T PF00873_consen 200 LSDVAQALQANNVNQPAGTIEEGNQEILIRVDGEFK--SLEDLENIPIRNSDGRPIRLKDVATVEDGYEDPTSIARFNG 276 (1021)
T ss_dssp HHHHHHHHHHHSCEEEEEEETTTTEEEEEEECES----SHHHHHT-EEEETTSEEEEGGGTEEEEEEESSSSEEEEETT
T ss_pred HHHHHHHHHHhhhhccCCccchhhHHHhhhhhhhcC--ChhhhceeEEEeccccccccccceEEEeecccchhhhhccc
Confidence 8899999998766543211 1223344444444332 3344444433 23344455555555555555554
No 184
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=91.87 E-value=1.4 Score=48.08 Aligned_cols=100 Identities=18% Similarity=0.276 Sum_probs=64.3
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHH---HHHHHHcCCceEEeccChhhHHHHHHH
Q 001906 784 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTA---HAVAREIGIQDVMADVMPAGKADAVRS 860 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a---~~ia~~~gi~~~~~~~~p~~K~~~v~~ 860 (997)
+.+.+-.||++.. .+.+-+++.++|++|+++|++++++||+...+. ..-.+.+|+..-..++.+. -....+.
T Consensus 3 ~~~~~D~DGtl~~----~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts-~~~~~~~ 77 (279)
T TIGR01452 3 QGFIFDCDGVLWL----GERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSS-ALCAARL 77 (279)
T ss_pred cEEEEeCCCceEc----CCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecH-HHHHHHH
Confidence 3556666776643 567788999999999999999999999754333 2344667885322222111 1122334
Q ss_pred Hhh---cCCEEEEEcCCcCCHHHHhcCCeeEE
Q 001906 861 FQK---DGSIVAMVGDGINDSPALAAADVGMA 889 (997)
Q Consensus 861 l~~---~g~~v~~vGDg~nD~~al~~A~vgia 889 (997)
|++ .+.+|.++|+. .....++.+++-+.
T Consensus 78 l~~~~~~~~~v~~iG~~-~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 78 LRQPPDAPKAVYVIGEE-GLRAELDAAGIRLA 108 (279)
T ss_pred HHhhCcCCCEEEEEcCH-HHHHHHHHCCCEEe
Confidence 444 35789999985 34567777776654
No 185
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=91.24 E-value=37 Score=43.88 Aligned_cols=146 Identities=17% Similarity=0.221 Sum_probs=85.8
Q ss_pred eEEEEEeCCCCc----hhhHHHHHHhhcCCCCeeEEEEEe--eccEEEEEECCCCcchH----HHHHHHHhcCcch--hh
Q 001906 46 RRIQVGVTGMTC----AACSNSVEGALMGLKGVAKASVAL--LQNKADVVFDPDLVKDE----DIKNAIEDAGFEA--EI 113 (997)
Q Consensus 46 ~~~~~~v~gm~C----~~C~~~ie~~l~~~~gv~~~~v~~--~~~~~~v~~~~~~~~~~----~i~~~i~~~Gy~~--~~ 113 (997)
..++-.-+|-+- ..-...+|++++.++|+.+.+-.- ....+++.++.+ .+++ ++++++.+..... ..
T Consensus 44 i~V~t~ypGAsae~ve~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~-~d~d~A~~~V~~kv~~~~~~LP~~~ 122 (1009)
T COG0841 44 IVVSATYPGASAETVEDSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG-TDPDTAAVQVQNKIQQAESRLPSGV 122 (1009)
T ss_pred EEEEEecCCCCHHHHHHHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC-CChHHHHHHHHHHHHHHHhcCCCcc
Confidence 344445556553 345678899999999998876543 445566666543 3444 6677776554221 10
Q ss_pred hcccCCCC-CCCCcceecccccCCccCh----hhHHHHHHhhhcCCCceeEEeecC-CCeEEEEeCCCC-----CCHHHH
Q 001906 114 LAESSTSG-PKPQGTIVGQYTIGGMTCA----ACVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKDDI 182 (997)
Q Consensus 114 ~~~~~~~~-~~~~~~~~~~l~i~gm~C~----~C~~~ie~~l~~~~GV~~v~v~~~-~~~~~v~~d~~~-----~~~~~i 182 (997)
..+.-... ........+.+.=+.+.-. --...++..|++++||.++++.=. ...+.|..||.+ .++.++
T Consensus 123 ~~p~v~~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV 202 (1009)
T COG0841 123 QQPGVTVEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDV 202 (1009)
T ss_pred CCCceEeccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHH
Confidence 00000000 0011111222222223211 135668899999999999998765 678899999864 678899
Q ss_pred HHHHHhcCCc
Q 001906 183 ANAIEDAGFE 192 (997)
Q Consensus 183 ~~~i~~~Gy~ 192 (997)
.++|++....
T Consensus 203 ~~ai~~qN~~ 212 (1009)
T COG0841 203 QSAIRAQNVQ 212 (1009)
T ss_pred HHHHHHhCcc
Confidence 9999876544
No 186
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=91.02 E-value=0.73 Score=46.15 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=42.1
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHcCCc
Q 001906 793 NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA---REIGIQ 843 (997)
Q Consensus 793 ~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia---~~~gi~ 843 (997)
.+-|.+..+|..-|++.++++.||.++.++..+|.....+-+.+. +++|++
T Consensus 13 DlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~ 66 (262)
T KOG3040|consen 13 DLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD 66 (262)
T ss_pred eccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC
Confidence 357899999999999999999999999999999887666655555 456765
No 187
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=90.96 E-value=0.5 Score=50.78 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=51.3
Q ss_pred eEEEEEECCeEEEEEEecCC--Cc-HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE
Q 001906 784 TGILVAYDDNLIGVMGIADP--VK-REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM 846 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d~--~~-~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~ 846 (997)
.++++-.|++++.- +.+ +| |++.+++++|+++|++++++|+.....+....+++|+..+|
T Consensus 127 kvIvFDLDgTLi~~---~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 127 HVVVFDLDSTLITD---EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred eEEEEecCCCCcCC---CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 46778889988764 333 55 99999999999999999999999999999999999998654
No 188
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=90.95 E-value=0.81 Score=53.83 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=86.5
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH-cCCceEEec-------------------cChhhHHHHHHHHhh
Q 001906 804 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE-IGIQDVMAD-------------------VMPAGKADAVRSFQK 863 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~-~gi~~~~~~-------------------~~p~~K~~~v~~l~~ 863 (997)
+++++.+. ++++|.+ +++|+-+...++.+|++ +|++.+.+. +.-++|.+-++....
T Consensus 111 l~~~a~~~---~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g 186 (497)
T PLN02177 111 VHPETWRV---FNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG 186 (497)
T ss_pred cCHHHHHH---HHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhC
Confidence 66765554 4567754 99999999999999987 899854221 123458777764332
Q ss_pred cCCEEEEEcCCcCCHHHHhcCCeeEEecCCcH--H--HHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001906 864 DGSIVAMVGDGINDSPALAAADVGMAIGAGTD--I--AIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 939 (997)
Q Consensus 864 ~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~--~--~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~ 939 (997)
......+.||+.||.++|+.|+-+..++...- . .+.-.-+|..+ ||-.++=--.+....+.|-=
T Consensus 187 ~~~~~~aYgDS~sD~plL~~a~e~y~V~~~~~~~~~~~~~~~~~~fhd------------grl~~~p~~~~~l~~~~~~p 254 (497)
T PLN02177 187 DALPDLGLGDRETDHDFMSICKEGYMVPRTKCEPLPRNKLLSPVIFHE------------GRLVQRPTPLVALLTFLWMP 254 (497)
T ss_pred CCCceEEEECCccHHHHHHhCCccEEeCCCCCCcCCcccCCCceeeeC------------CcccCCCCHHHHHHHHHHHH
Confidence 12223789999999999999999999975210 1 11122344433 44444444445555566656
Q ss_pred HHHHHHhhhhccccCCCccHHHHHH
Q 001906 940 IAIPIAAGVFFPSLGIKLPPWAAGA 964 (997)
Q Consensus 940 i~i~la~g~~~~~~g~~l~p~~a~~ 964 (997)
++++++.-= -+.|+.|+-+++-.
T Consensus 255 ~g~~l~~~r--~~~~~~lp~~~~~~ 277 (497)
T PLN02177 255 IGFILSLLR--VYLNIPLPERIARY 277 (497)
T ss_pred HHHHHHHHH--HHHhhhhHHHHHHH
Confidence 666665411 11344455444433
No 189
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=89.75 E-value=1.6 Score=37.89 Aligned_cols=64 Identities=34% Similarity=0.568 Sum_probs=51.8
Q ss_pred ccccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCcee
Q 001906 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEAS 194 (997)
Q Consensus 131 ~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~ 194 (997)
.+.++++.|..|...++..+...+++.....+....+..+.+++.......+...+++.||...
T Consensus 26 ~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 89 (92)
T TIGR02052 26 TLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSS 89 (92)
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeE
Confidence 4668999999999999999999999988889988888888876554566666666677888754
No 190
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=89.63 E-value=0.26 Score=49.60 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=55.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---------ChhhH--HHHHHHHhhcCCEEEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAGK--ADAVRSFQKDGSIVAMV 871 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~---------~p~~K--~~~v~~l~~~g~~v~~v 871 (997)
++.|++.++++ ++.++|+-+........+.+|+..+|..+ .|+.. ..+.+.+....+.++||
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~v 162 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMV 162 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeE
Confidence 47889999988 37899999999999999999997654332 22222 33455555556789999
Q ss_pred cCCcCCHHHHhcC
Q 001906 872 GDGINDSPALAAA 884 (997)
Q Consensus 872 GDg~nD~~al~~A 884 (997)
||+..|+.+.+++
T Consensus 163 gD~~~Di~~A~~~ 175 (175)
T TIGR01493 163 AAHQWDLIGARKF 175 (175)
T ss_pred ecChhhHHHHhcC
Confidence 9999999887654
No 191
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=89.42 E-value=2.3 Score=36.81 Aligned_cols=65 Identities=37% Similarity=0.593 Sum_probs=48.2
Q ss_pred EEEEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcch
Q 001906 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111 (997)
Q Consensus 47 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 111 (997)
+..+.+.|+.|..|...++..+...+++....++.......+.++........+.....+.||..
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPS 88 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCe
Confidence 34577999999999999999999999988888888888766665433234444445556667664
No 192
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=88.80 E-value=1 Score=47.12 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=68.3
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---------ChhhHH--HHHHHHhhcCCEEEEEc
Q 001906 804 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAGKA--DAVRSFQKDGSIVAMVG 872 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~---------~p~~K~--~~v~~l~~~g~~v~~vG 872 (997)
+-++..+++++||+.|..+.++|.=... .+.+-..+|+...|.-+ .|+.+. ..++.+..+.+.++++|
T Consensus 114 ~~~~~~~~lq~lR~~g~~l~iisN~d~r-~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIg 192 (237)
T KOG3085|consen 114 YLDGMQELLQKLRKKGTILGIISNFDDR-LRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIG 192 (237)
T ss_pred eccHHHHHHHHHHhCCeEEEEecCCcHH-HHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEec
Confidence 3456669999999999888888874433 34778888886544432 355542 36777777788999999
Q ss_pred CC-cCCHHHHhcCC-eeEEecCCcHHHHH
Q 001906 873 DG-INDSPALAAAD-VGMAIGAGTDIAIE 899 (997)
Q Consensus 873 Dg-~nD~~al~~A~-vgia~~~~~~~~~~ 899 (997)
|. .||....++++ .++-+.++....++
T Consensus 193 D~l~nD~~gA~~~G~~ailv~~~~~~~~~ 221 (237)
T KOG3085|consen 193 DLLENDYEGARNLGWHAILVDNSITALKE 221 (237)
T ss_pred CccccccHhHHHcCCEEEEEccccchhhh
Confidence 98 89999999998 45666655444443
No 193
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=88.15 E-value=0.46 Score=47.21 Aligned_cols=89 Identities=13% Similarity=0.051 Sum_probs=63.9
Q ss_pred ecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-EEecc-C----hhhHHHHHHH---HhhcCCEEEE
Q 001906 800 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-VMADV-M----PAGKADAVRS---FQKDGSIVAM 870 (997)
Q Consensus 800 ~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~-~~~~~-~----p~~K~~~v~~---l~~~g~~v~~ 870 (997)
+.=..||++.+.+++|++. +++++.|......|..+.+.++... .+... . ...|..+++. +.....+|+|
T Consensus 39 ~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIi 117 (162)
T TIGR02251 39 VYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVII 117 (162)
T ss_pred EEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEE
Confidence 3445899999999999987 9999999999999999999999764 33221 1 1111123333 3344567999
Q ss_pred EcCCcCCHHHHhcCCeeEE
Q 001906 871 VGDGINDSPALAAADVGMA 889 (997)
Q Consensus 871 vGDg~nD~~al~~A~vgia 889 (997)
|||...|..+-..+++-|.
T Consensus 118 VDD~~~~~~~~~~NgI~i~ 136 (162)
T TIGR02251 118 IDNSPYSYSLQPDNAIPIK 136 (162)
T ss_pred EeCChhhhccCccCEeecC
Confidence 9999998877666655543
No 194
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=87.70 E-value=1.2 Score=47.93 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=49.9
Q ss_pred eEEEEEECCeEEEEEEecCCC--c-HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE
Q 001906 784 TGILVAYDDNLIGVMGIADPV--K-REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM 846 (997)
Q Consensus 784 ~~i~va~~~~~lG~i~~~d~~--~-~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~ 846 (997)
+++++..|++++-- +.++ | |++.+++++|+++|++++++|+.+...+..+.+.+|+...|
T Consensus 129 ~~i~~D~D~TL~~~---~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 129 HVIVFDLDSTLITD---EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred cEEEEecCCCccCC---CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 46677778887654 4444 4 99999999999999999999988888899999999998543
No 195
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=86.88 E-value=0.55 Score=49.53 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=56.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHH---HHHHHHHHcCCc---eEEecc-Ch-------hhHHHHHHHHhhcC-CE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWR---TAHAVAREIGIQ---DVMADV-MP-------AGKADAVRSFQKDG-SI 867 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~---~a~~ia~~~gi~---~~~~~~-~p-------~~K~~~v~~l~~~g-~~ 867 (997)
+.-|++.+.++.++++|++|+++||++.. .+..=.++.|+. .++-+- .+ +-|...-+.++++| +.
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~I 194 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYRI 194 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEEE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCCcE
Confidence 44588999999999999999999997654 444455677874 222222 11 23777888888885 56
Q ss_pred EEEEcCCcCCHHH
Q 001906 868 VAMVGDGINDSPA 880 (997)
Q Consensus 868 v~~vGDg~nD~~a 880 (997)
++++||..+|...
T Consensus 195 i~~iGD~~~D~~~ 207 (229)
T PF03767_consen 195 IANIGDQLSDFSG 207 (229)
T ss_dssp EEEEESSGGGCHC
T ss_pred EEEeCCCHHHhhc
Confidence 7899999999764
No 196
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=86.40 E-value=1.1 Score=43.65 Aligned_cols=86 Identities=23% Similarity=0.265 Sum_probs=60.6
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHH----HHHHHHHHcCCce----EEeccChh-hHHHHHHHHhhcCCEEEEEcCC
Q 001906 804 VKREAAVVVEGLLKMGVRPVMVTGDNWR----TAHAVAREIGIQD----VMADVMPA-GKADAVRSFQKDGSIVAMVGDG 874 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~~~i~Tgd~~~----~a~~ia~~~gi~~----~~~~~~p~-~K~~~v~~l~~~g~~v~~vGDg 874 (997)
+++-+++.|..=++.|-.++.+||+... ++..+|+...|.+ .|+.-.|. .+..-..+++.++. -.+-||+
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~~qy~Kt~~i~~~~~-~IhYGDS 193 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKPGQYTKTQWIQDKNI-RIHYGDS 193 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCCCcccccccHHHHhcCc-eEEecCC
Confidence 5566778888889999999999998754 5667777777763 34433331 12233556666665 4677999
Q ss_pred cCCHHHHhcCCe-eEEe
Q 001906 875 INDSPALAAADV-GMAI 890 (997)
Q Consensus 875 ~nD~~al~~A~v-gia~ 890 (997)
.||+.|.+.|++ ||-+
T Consensus 194 D~Di~AAkeaG~RgIRi 210 (237)
T COG3700 194 DNDITAAKEAGARGIRI 210 (237)
T ss_pred chhhhHHHhcCccceeE
Confidence 999999999985 3544
No 197
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=86.28 E-value=1.3 Score=52.31 Aligned_cols=81 Identities=15% Similarity=0.157 Sum_probs=55.0
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCH------------HHHHHHHHHcCCc-eEEeccC----hhhHHHHHHHHhh---
Q 001906 804 VKREAAVVVEGLLKMGVRPVMVTGDNW------------RTAHAVAREIGIQ-DVMADVM----PAGKADAVRSFQK--- 863 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~~~i~Tgd~~------------~~a~~ia~~~gi~-~~~~~~~----p~~K~~~v~~l~~--- 863 (997)
+.|++.+.|+.|++.|++++|+|+-.. ..+..+.+++|+. .++.... .+.+...+..+.+
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdviia~~~~~~RKP~pGm~~~a~~~~~ 277 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQVFIAIGAGFYRKPLTGMWDHLKEEAN 277 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEEEEeCCCCCCCCCCHHHHHHHHHhcC
Confidence 468999999999999999999998655 3577888889885 1221111 1222333333322
Q ss_pred -----cCCEEEEEcCCcCCHHHHhcC
Q 001906 864 -----DGSIVAMVGDGINDSPALAAA 884 (997)
Q Consensus 864 -----~g~~v~~vGDg~nD~~al~~A 884 (997)
......||||...|..+-+.|
T Consensus 278 ~~~~Id~~~S~~VGDaagr~~~g~~a 303 (526)
T TIGR01663 278 DGTEIQEDDCFFVGDAAGRPANGKAA 303 (526)
T ss_pred cccCCCHHHeEEeCCcccchHHHHhc
Confidence 234689999999998775544
No 198
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=86.18 E-value=3.6 Score=40.25 Aligned_cols=87 Identities=17% Similarity=0.130 Sum_probs=63.5
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHH---HHHHc-----CCce-----------------EEeccChhhHH
Q 001906 801 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHA---VAREI-----GIQD-----------------VMADVMPAGKA 855 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~---ia~~~-----gi~~-----------------~~~~~~p~~K~ 855 (997)
.|..++++.+..++++++|++++-+|+++...+.. ..+.. +++. +..+-.-+.|.
T Consensus 25 ~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~al~rEvi~~~p~~fK~ 104 (157)
T PF08235_consen 25 KDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFSALHREVISKDPEEFKI 104 (157)
T ss_pred chhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchhhhhhccccccChHHHHH
Confidence 46889999999999999999999999998655443 34444 4431 11111234588
Q ss_pred HHHHHHhhc-----CCEEEEEcCCcCCHHHHhcCCee
Q 001906 856 DAVRSFQKD-----GSIVAMVGDGINDSPALAAADVG 887 (997)
Q Consensus 856 ~~v~~l~~~-----g~~v~~vGDg~nD~~al~~A~vg 887 (997)
..++.++.. ..-.+..|+..+|+.+-+++++.
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 888888864 34577788889999999988875
No 199
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=86.04 E-value=1.7 Score=46.07 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=29.8
Q ss_pred EEECCeEEEEEEe--cCCCcHhHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHHcCC
Q 001906 788 VAYDDNLIGVMGI--ADPVKREAAVVVEGLLKMG-VRPVMVTGDNWRTAHAVAREIGI 842 (997)
Q Consensus 788 va~~~~~lG~i~~--~d~~~~~~~~~i~~l~~~g-i~~~i~Tgd~~~~a~~ia~~~gi 842 (997)
+-|||++..+..- .-.+.+++.+++++|.+.. ..++|+||+..........--++
T Consensus 2 lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~~~~~i 59 (235)
T PF02358_consen 2 LDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFGGIPNI 59 (235)
T ss_dssp EE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-S-SS-
T ss_pred cccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhcCCCCc
Confidence 4566766665553 3356699999999998774 57999999999996665444333
No 200
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=85.88 E-value=1.5 Score=48.90 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=60.1
Q ss_pred cHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-C-------CceEEe-------------------ccChh-----
Q 001906 805 KREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREI-G-------IQDVMA-------------------DVMPA----- 852 (997)
Q Consensus 805 ~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~-g-------i~~~~~-------------------~~~p~----- 852 (997)
.|++.+++++|+++|+++.++|+.+...+..+.+.+ | +.++|. ++.++
T Consensus 186 ~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g~~~ 265 (343)
T TIGR02244 186 DPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVETGSLK 265 (343)
T ss_pred chhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCCCccc
Confidence 689999999999999999999999999999999996 6 432111 11110
Q ss_pred -------h---------HHHHHHHHhhcCCEEEEEcCC-cCCHHHHh-cCCe
Q 001906 853 -------G---------KADAVRSFQKDGSIVAMVGDG-INDSPALA-AADV 886 (997)
Q Consensus 853 -------~---------K~~~v~~l~~~g~~v~~vGDg-~nD~~al~-~A~v 886 (997)
+ =..+.+.+...+..|++|||. ..|+...+ .++.
T Consensus 266 ~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw 317 (343)
T TIGR02244 266 WGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGW 317 (343)
T ss_pred CCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCc
Confidence 0 123556666678999999998 46887766 5553
No 201
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=84.90 E-value=4.4 Score=44.25 Aligned_cols=83 Identities=16% Similarity=0.089 Sum_probs=49.8
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHH----------H----HHHHcCCceEE-eccChhhHHHHHHHHhhcCCEE
Q 001906 804 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAH----------A----VAREIGIQDVM-ADVMPAGKADAVRSFQKDGSIV 868 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~----------~----ia~~~gi~~~~-~~~~p~~K~~~v~~l~~~g~~v 868 (997)
-.+++.++++.|++.|+ ..++|+.+..... . +....|-.... ..-.|+-=..+++.+....+.+
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 47899999999999897 5677764432110 0 11111211111 1111222223445555556789
Q ss_pred EEEcCCc-CCHHHHhcCCee
Q 001906 869 AMVGDGI-NDSPALAAADVG 887 (997)
Q Consensus 869 ~~vGDg~-nD~~al~~A~vg 887 (997)
+||||.. .|+.+.++|++-
T Consensus 223 lmIGD~~~tDI~~A~~aGi~ 242 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMT 242 (279)
T ss_pred EEECCChHHHHHHHHHcCCc
Confidence 9999995 999999999954
No 202
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=84.86 E-value=1.5 Score=45.94 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=42.3
Q ss_pred EEECCeEEEEEEecCC-CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 001906 788 VAYDDNLIGVMGIADP-VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 843 (997)
Q Consensus 788 va~~~~~lG~i~~~d~-~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~ 843 (997)
.-.||+++. .+. ..+.++++|++|+++|++++++||++...+..+.+.+|+.
T Consensus 4 ~DlDGTLL~----~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 4 SDLDGTLLD----SHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EeCCCCCcC----CCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 344666553 233 4455899999999999999999999999999999999976
No 203
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=84.80 E-value=9.1 Score=41.07 Aligned_cols=66 Identities=12% Similarity=0.150 Sum_probs=53.7
Q ss_pred HHHHcCCeEEEEEECCeEEEEEEe--cCCCcHhHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHcCC
Q 001906 777 ELEESARTGILVAYDDNLIGVMGI--ADPVKREAAVVVEGLLKM-GVRPVMVTGDNWRTAHAVAREIGI 842 (997)
Q Consensus 777 ~~~~~g~~~i~va~~~~~lG~i~~--~d~~~~~~~~~i~~l~~~-gi~~~i~Tgd~~~~a~~ia~~~gi 842 (997)
.+.....+.+.+-|||++...+.. ...+.++..++++.|... ...++|+||+..........-.|+
T Consensus 12 ~~~~a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i 80 (266)
T COG1877 12 PYLNARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGI 80 (266)
T ss_pred ccccccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCc
Confidence 345567788999999998877666 456789999999999988 457999999999998888875555
No 204
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=84.78 E-value=6.4 Score=42.33 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=70.8
Q ss_pred EEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc----CCceEEeccChhhHHHHHHHHhhc--CCEE
Q 001906 795 IGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREI----GIQDVMADVMPAGKADAVRSFQKD--GSIV 868 (997)
Q Consensus 795 lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~----gi~~~~~~~~p~~K~~~v~~l~~~--g~~v 868 (997)
=|++.-.+.+-|++.++|++|+++|++++++|+.+..+...+++++ +++.-..++.... ......+.++ +.+|
T Consensus 16 DGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~-~at~~~l~~~~~~~kv 94 (269)
T COG0647 16 DGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSG-DATADYLAKQKPGKKV 94 (269)
T ss_pred cCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHH-HHHHHHHHhhCCCCEE
Confidence 3566678999999999999999999999999998777776555443 3321111111101 1223333333 3689
Q ss_pred EEEcCCcCCHHHHhcCCeeEEecCCcHHHHHhcCEEEecCC
Q 001906 869 AMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNS 909 (997)
Q Consensus 869 ~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~ 909 (997)
.++|.+ .+...++.+++-+.-..... ..|+++...+
T Consensus 95 ~viG~~-~l~~~l~~~G~~~~~~~~~~----~~d~Vv~g~d 130 (269)
T COG0647 95 YVIGEE-GLKEELEGAGFELVDEEEPA----RVDAVVVGLD 130 (269)
T ss_pred EEECCc-chHHHHHhCCcEEeccCCCC----cccEEEEecC
Confidence 999954 67788999988776642221 1577776544
No 205
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=83.94 E-value=1.3 Score=37.59 Aligned_cols=56 Identities=29% Similarity=0.439 Sum_probs=38.2
Q ss_pred HHHHHHHhhcCCEEEEEcCC-cCCHHHHhcCCee-EEe--cC-CcHHH---HHhcCEEEecCChhh
Q 001906 855 ADAVRSFQKDGSIVAMVGDG-INDSPALAAADVG-MAI--GA-GTDIA---IEAADYVLMRNSLED 912 (997)
Q Consensus 855 ~~~v~~l~~~g~~v~~vGDg-~nD~~al~~A~vg-ia~--~~-~~~~~---~~~ad~vl~~~~~~~ 912 (997)
..+.+.+......++||||. ..|+.+-+++++- |.+ |. ..+.. ...+|+|+ +++.+
T Consensus 11 ~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv--~~l~e 74 (75)
T PF13242_consen 11 EQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVV--DDLKE 74 (75)
T ss_dssp HHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEE--SSGGG
T ss_pred HHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEE--CCHHh
Confidence 34555555556789999999 9999999999954 444 32 22232 24789988 55654
No 206
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=83.43 E-value=2.4 Score=42.12 Aligned_cols=81 Identities=12% Similarity=0.237 Sum_probs=58.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHHcCCc----------eEE--eccChhhHHHHHHHHhhc----C
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVT-GDNWRTAHAVAREIGIQ----------DVM--ADVMPAGKADAVRSFQKD----G 865 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~T-gd~~~~a~~ia~~~gi~----------~~~--~~~~p~~K~~~v~~l~~~----g 865 (997)
.+.|++.++++.|++.|+++.++| -+.+..|+.+.+.+++. ++| .++-|..|..-.+.++++ .
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y 124 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPY 124 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH---G
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCCh
Confidence 367999999999999999999999 57889999999999998 554 356788898888877764 4
Q ss_pred CEEEEEcCCcCCHHHHhc
Q 001906 866 SIVAMVGDGINDSPALAA 883 (997)
Q Consensus 866 ~~v~~vGDg~nD~~al~~ 883 (997)
+.++++=|-.......+.
T Consensus 125 ~eMlFFDDe~~N~~~v~~ 142 (169)
T PF12689_consen 125 EEMLFFDDESRNIEVVSK 142 (169)
T ss_dssp GGEEEEES-HHHHHHHHT
T ss_pred hHEEEecCchhcceeeEe
Confidence 568888887666555554
No 207
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=82.63 E-value=2.2 Score=42.47 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=42.5
Q ss_pred hhhHHHHHHhhhcCCCceeEEeecCCCe-------------------EEEEeCCCCCCHHHHHHHHHh
Q 001906 140 AACVNSVEGILRGLPGVKRAVVALATSL-------------------GEVEYDPTVISKDDIANAIED 188 (997)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~v~~~~~~-------------------~~v~~d~~~~~~~~i~~~i~~ 188 (997)
++|-|-+|..+.+++||.++.+-++.+. +.|.|||..++.++|++..=+
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~ 77 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQ 77 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHH
Confidence 4788889999999999999999887765 899999999999999886543
No 208
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=82.26 E-value=8.3 Score=41.25 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=52.8
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHcCCce---EEeccCh--------hhHHHHHHHHhhcCC
Q 001906 801 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRT---AHAVAREIGIQD---VMADVMP--------AGKADAVRSFQKDGS 866 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~---a~~ia~~~gi~~---~~~~~~p--------~~K~~~v~~l~~~g~ 866 (997)
+.+.-|++.+..+.+++.|++++++||+.... +..=.++.|+.. .+-|-.. +.|...-+.+.++|.
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGY 222 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGY 222 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCc
Confidence 34566899999999999999999999998642 222234568753 2333111 124444455555655
Q ss_pred -EEEEEcCCcCCHH
Q 001906 867 -IVAMVGDGINDSP 879 (997)
Q Consensus 867 -~v~~vGDg~nD~~ 879 (997)
.++.+||..+|..
T Consensus 223 rIv~~iGDq~sDl~ 236 (275)
T TIGR01680 223 NIVGIIGDQWNDLK 236 (275)
T ss_pred eEEEEECCCHHhcc
Confidence 6788999999973
No 209
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=81.79 E-value=6 Score=39.73 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=54.6
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCC-----HH----------HHHHHHHHcCC--ce-EEeccChhh-------HHH-H
Q 001906 804 VKREAAVVVEGLLKMGVRPVMVTGDN-----WR----------TAHAVAREIGI--QD-VMADVMPAG-------KAD-A 857 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~~~i~Tgd~-----~~----------~a~~ia~~~gi--~~-~~~~~~p~~-------K~~-~ 857 (997)
+.+++.+++..|+++|++++|+|.-. .. --..+-++.|+ +. +++.-.|++ |.- +
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~ 111 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGML 111 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHH
Confidence 56899999999999999999998721 11 12223334442 22 333333432 222 3
Q ss_pred HHHHhhc---CCEEEEEcCCcCCHHHHhcCCee
Q 001906 858 VRSFQKD---GSIVAMVGDGINDSPALAAADVG 887 (997)
Q Consensus 858 v~~l~~~---g~~v~~vGDg~nD~~al~~A~vg 887 (997)
.+.+++. -....||||-..|..+..++++.
T Consensus 112 ~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 112 LSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred HHHHHHhCCCccceEEecCcHHHHHHHHHCCCC
Confidence 3333333 36789999999999999999987
No 210
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=79.62 E-value=1e+02 Score=40.43 Aligned_cols=145 Identities=14% Similarity=0.174 Sum_probs=81.7
Q ss_pred CCceEEEEEeCCCCchh----hHHHHHHhhcCCCCeeEEEEEe---eccEEEEEECCCCcc----hHHHHHHHHhc--Cc
Q 001906 43 DGMRRIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVAL---LQNKADVVFDPDLVK----DEDIKNAIEDA--GF 109 (997)
Q Consensus 43 ~~~~~~~~~v~gm~C~~----C~~~ie~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~~----~~~i~~~i~~~--Gy 109 (997)
.+.-.+...-+|.+-.. -...+|++++.++|++++...- ......+.++.+ .+ .+++.+.+... .+
T Consensus 40 ~~~i~V~~~~pGas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~-~d~~~a~~~v~~~l~~~~~~L 118 (1044)
T TIGR00915 40 PPAVTVSASYPGASAQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQG-TDPDIAQVQVQNKLQLATPLL 118 (1044)
T ss_pred CCEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHhhC
Confidence 34445555667766432 3456788899999998887643 234555666543 22 24455665543 12
Q ss_pred chhhhcccCCCCCCCCcceecccccCC----ccCh----hhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCC-----
Q 001906 110 EAEILAESSTSGPKPQGTIVGQYTIGG----MTCA----ACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV----- 176 (997)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~i~g----m~C~----~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~----- 176 (997)
....-.+..... .........+.+.+ .+-. .-.+.++..|++++||.++++.-..+.+.|..||..
T Consensus 119 P~~~~~~~~~~~-~~~~~~~~~i~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~g 197 (1044)
T TIGR00915 119 PQEVQRQGVRVE-KASSNFLMVIGLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQ 197 (1044)
T ss_pred CCcccCCCcEEe-CCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcC
Confidence 111000000000 00000011222211 1111 123578899999999999999877777999999853
Q ss_pred CCHHHHHHHHHhc
Q 001906 177 ISKDDIANAIEDA 189 (997)
Q Consensus 177 ~~~~~i~~~i~~~ 189 (997)
++..++.++|+..
T Consensus 198 ls~~dV~~~i~~~ 210 (1044)
T TIGR00915 198 LTPADVISAIQAQ 210 (1044)
T ss_pred CCHHHHHHHHHHh
Confidence 6888999999874
No 211
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=78.96 E-value=87 Score=41.09 Aligned_cols=144 Identities=17% Similarity=0.232 Sum_probs=83.1
Q ss_pred CceEEEEEeCCCCch----hhHHHHHHhhcCCCCeeEEEEEe---eccEEEEEECCCCcch----HHHHHHHHhc--Ccc
Q 001906 44 GMRRIQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVAL---LQNKADVVFDPDLVKD----EDIKNAIEDA--GFE 110 (997)
Q Consensus 44 ~~~~~~~~v~gm~C~----~C~~~ie~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~~~----~~i~~~i~~~--Gy~ 110 (997)
..-.+...-+|.+-. .-...+|++++.++|+++++-.- ....+.+.++.+ .+. .++++.+.++ .+.
T Consensus 41 p~v~V~t~ypGasp~~vE~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g-~d~~~a~~~V~~~v~~~~~~LP 119 (1037)
T PRK10555 41 PNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAG-TDPDEAVQQVQNQLQSAMRKLP 119 (1037)
T ss_pred cEEEEEEecCCCCHHHHHHHHhHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECC-CCHHHHHHHHHHHHHHHHHhCC
Confidence 334455555666533 24567888999999999997642 234566777544 233 3555555543 111
Q ss_pred hhhhcccCCCCCCCCcceeccccc---CC-ccC----hhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCC-----C
Q 001906 111 AEILAESSTSGPKPQGTIVGQYTI---GG-MTC----AACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----I 177 (997)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~i---~g-m~C----~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~-----~ 177 (997)
..+-.+..... .........+.+ ++ ++- .--++.++..|++++||.+++++-....+.|..||.. +
T Consensus 120 ~~v~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gl 198 (1037)
T PRK10555 120 QAVQNQGVTVR-KTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQM 198 (1037)
T ss_pred CccccCCceEe-CCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCC
Confidence 11000000000 001001122222 22 221 1134678899999999999999876677899999853 6
Q ss_pred CHHHHHHHHHhc
Q 001906 178 SKDDIANAIEDA 189 (997)
Q Consensus 178 ~~~~i~~~i~~~ 189 (997)
+..++.++|+..
T Consensus 199 s~~~v~~al~~~ 210 (1037)
T PRK10555 199 TTKDVTDAIESQ 210 (1037)
T ss_pred CHHHHHHHHHHh
Confidence 888999999864
No 212
>PTZ00445 p36-lilke protein; Provisional
Probab=78.77 E-value=5.4 Score=40.81 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHcCCeEEEEEECCeEEE-----EEEe-------cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHH----
Q 001906 769 DHVESFVVELEESARTGILVAYDDNLIG-----VMGI-------ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRT---- 832 (997)
Q Consensus 769 ~~~~~~~~~~~~~g~~~i~va~~~~~lG-----~i~~-------~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~---- 832 (997)
+......+.+.+.|-++++.-.|.++++ ..-- -..++|+.+..+++|++.||++.++|=-....
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~ 108 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSE 108 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhcccc
Confidence 3344566778999999999999998877 3211 12279999999999999999999998544433
Q ss_pred -----------HHHHHHHcC----CceEEecc----------------ChhhHH------HHHHHHhhcCCEEEEEcCCc
Q 001906 833 -----------AHAVAREIG----IQDVMADV----------------MPAGKA------DAVRSFQKDGSIVAMVGDGI 875 (997)
Q Consensus 833 -----------a~~ia~~~g----i~~~~~~~----------------~p~~K~------~~v~~l~~~g~~v~~vGDg~ 875 (997)
+....+..+ |..+++-. .|+.+. .+++...-..+.++++=|..
T Consensus 109 ~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~ 188 (219)
T PTZ00445 109 NRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDM 188 (219)
T ss_pred CCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCH
Confidence 444444333 22343321 233222 23344444467899999999
Q ss_pred CCHHHHhcCCee
Q 001906 876 NDSPALAAADVG 887 (997)
Q Consensus 876 nD~~al~~A~vg 887 (997)
..+.+.++.|+-
T Consensus 189 ~NVeaA~~lGi~ 200 (219)
T PTZ00445 189 NNCKNALKEGYI 200 (219)
T ss_pred HHHHHHHHCCCE
Confidence 999999887753
No 213
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=78.49 E-value=2.3e+02 Score=37.25 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=82.2
Q ss_pred CCCceEEEEEeCCCCchhhH----HHHHHhhcCCCCeeEEEEEeecc--EEEEEECCCCcc----hHHHHHHHHhcC--c
Q 001906 42 GDGMRRIQVGVTGMTCAACS----NSVEGALMGLKGVAKASVALLQN--KADVVFDPDLVK----DEDIKNAIEDAG--F 109 (997)
Q Consensus 42 ~~~~~~~~~~v~gm~C~~C~----~~ie~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~----~~~i~~~i~~~G--y 109 (997)
+.++-.+...-+|.+-...+ ..+|++++.++|+++++..-..+ ...+.++.+ .+ ..++++.+.+.- +
T Consensus 41 ~~p~v~V~~~~pGas~~~ve~~vt~piE~~l~~i~gv~~i~S~s~~G~s~i~l~f~~~-~d~~~a~~~v~~~v~~~~~~L 119 (1025)
T PRK10614 41 DFPVIMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILQFDFD-RDINGAARDVQAAINAAQSLL 119 (1025)
T ss_pred CCceEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHhhC
Confidence 34455566666777655554 56789999999999997644444 444555443 23 235555555431 1
Q ss_pred chhhh-cccCCCCCCCCcceecccccCC--ccCh---h-hHHHHHHhhhcCCCceeEEeecC-CCeEEEEeCCCC-----
Q 001906 110 EAEIL-AESSTSGPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV----- 176 (997)
Q Consensus 110 ~~~~~-~~~~~~~~~~~~~~~~~l~i~g--m~C~---~-C~~~ie~~l~~~~GV~~v~v~~~-~~~~~v~~d~~~----- 176 (997)
..... .+.-...+. .......+.+.+ +.-. . -.+.++..|++++||.++++.-. .+.+.|..||..
T Consensus 120 P~~~~~~p~~~~~~~-~~~pv~~~~~~~~~~~~~~L~~~~~~~l~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~g 198 (1025)
T PRK10614 120 PSGMPSRPTYRKANP-SDAPIMILTLTSDTYSQGQLYDFASTQLAQTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQG 198 (1025)
T ss_pred CCccCCCCEEEecCC-CccceeEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEeCHHHHHHcC
Confidence 10100 000000000 000011222222 1111 1 13678999999999999998643 357899999853
Q ss_pred CCHHHHHHHHHhc
Q 001906 177 ISKDDIANAIEDA 189 (997)
Q Consensus 177 ~~~~~i~~~i~~~ 189 (997)
++.+++.+++...
T Consensus 199 ls~~dV~~al~~~ 211 (1025)
T PRK10614 199 VSLDDVRQAISNA 211 (1025)
T ss_pred CCHHHHHHHHHHh
Confidence 6788999999865
No 214
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=77.97 E-value=4.2 Score=39.77 Aligned_cols=49 Identities=22% Similarity=0.458 Sum_probs=41.0
Q ss_pred hhhHHHHHHhhhcCCCceeEEeecCCC--------------eEEEEeCCCCCCHHHHHHHHHh
Q 001906 140 AACVNSVEGILRGLPGVKRAVVALATS--------------LGEVEYDPTVISKDDIANAIED 188 (997)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~v~~~~~--------------~~~v~~d~~~~~~~~i~~~i~~ 188 (997)
++|-|-+|..+.+++||.++++-++.+ .+.|.|||..++.++|++..=+
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~ 70 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFE 70 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHH
Confidence 478888999999999999998877553 3789999999999999886543
No 215
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=77.65 E-value=1.2e+02 Score=39.83 Aligned_cols=143 Identities=14% Similarity=0.175 Sum_probs=82.2
Q ss_pred ceEEEEEeCCCCch----hhHHHHHHhhcCCCCeeEEEEEe---eccEEEEEECCCCcch----HHHHHHHHhcC--cch
Q 001906 45 MRRIQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVAL---LQNKADVVFDPDLVKD----EDIKNAIEDAG--FEA 111 (997)
Q Consensus 45 ~~~~~~~v~gm~C~----~C~~~ie~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~~~----~~i~~~i~~~G--y~~ 111 (997)
.-.+...-+|.+-. .-...+|++++.++|+++++-.- ....+.+.++.+ .+. .++++.+.... +..
T Consensus 42 ~v~V~t~ypGasp~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g-~d~~~a~~~V~~~i~~~~~~LP~ 120 (1049)
T PRK15127 42 AVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESG-TDADIAQVQVQNKLQLAMPLLPQ 120 (1049)
T ss_pred eEEEEEEeCCCCHHHHHHHhhHHHHHHhcCCCCceEEEEEecCCceEEEEEEEECC-CChHHHHHHHHHHHHHHHhhCCC
Confidence 34455556666533 34467888999999999988643 344566777654 333 35556665442 211
Q ss_pred hhhcccCCCCCCCCcceecccccC---C-ccC-hh---hHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCC-----CC
Q 001906 112 EILAESSTSGPKPQGTIVGQYTIG---G-MTC-AA---CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----IS 178 (997)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~i~---g-m~C-~~---C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~-----~~ 178 (997)
..-.+... ...........+.+. + ++- .- -.+.++..|++++||.++++.-..+.+.|..||.. ++
T Consensus 121 ~~~~~~~~-~~~~~~~~v~~~~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls 199 (1049)
T PRK15127 121 EVQQQGVS-VEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLT 199 (1049)
T ss_pred cccCCCcE-EecCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCC
Confidence 10000000 000000001112221 1 111 11 23568899999999999998866677999999853 67
Q ss_pred HHHHHHHHHhc
Q 001906 179 KDDIANAIEDA 189 (997)
Q Consensus 179 ~~~i~~~i~~~ 189 (997)
..++.++++..
T Consensus 200 ~~~V~~~l~~~ 210 (1049)
T PRK15127 200 PVDVINAIKAQ 210 (1049)
T ss_pred HHHHHHHHHHh
Confidence 88999999865
No 216
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=77.17 E-value=12 Score=39.56 Aligned_cols=115 Identities=19% Similarity=0.263 Sum_probs=68.5
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----eEEecc-----------------ChhhHHH-HH-
Q 001906 802 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----DVMADV-----------------MPAGKAD-AV- 858 (997)
Q Consensus 802 d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~----~~~~~~-----------------~p~~K~~-~v- 858 (997)
-.+|+++.+.++.|+++++.+.|.|+--......+.++.|.. .+.++. -+-.|-. .+
T Consensus 89 i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l~ 168 (246)
T PF05822_consen 89 IMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESALE 168 (246)
T ss_dssp --B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHHT
T ss_pred hhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccccc
Confidence 358999999999999999999999998888888888888764 111110 1112322 22
Q ss_pred -----HHHhhcCCEEEEEcCCcCCHHHHhcC---CeeEEec--CCc-----HHHHHhcCEEEecCChhhHHHHH
Q 001906 859 -----RSFQKDGSIVAMVGDGINDSPALAAA---DVGMAIG--AGT-----DIAIEAADYVLMRNSLEDVIIAI 917 (997)
Q Consensus 859 -----~~l~~~g~~v~~vGDg~nD~~al~~A---~vgia~~--~~~-----~~~~~~ad~vl~~~~~~~l~~~i 917 (997)
+.++ ....|+..||..-|+.|..-. +.-+.+| +.. +.-+++-|+|+.+|.--.++..|
T Consensus 169 ~~~~~~~~~-~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv~D~tm~v~~~i 241 (246)
T PF05822_consen 169 DSPYFKQLK-KRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLVDDQTMDVPNAI 241 (246)
T ss_dssp THHHHHCTT-T--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEET--B-HHHHHH
T ss_pred CchHHHHhc-cCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEECCCCchHHHHH
Confidence 2222 245699999999999998655 3444444 322 34556789999988654444443
No 217
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=76.57 E-value=1e+02 Score=40.55 Aligned_cols=146 Identities=12% Similarity=0.160 Sum_probs=82.0
Q ss_pred CCceEEEEEeCCCCchh----hHHHHHHhhcCCCCeeEEEEEeeccE--EEEEECCCCcch----HHHHHHHHhcC--cc
Q 001906 43 DGMRRIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQNK--ADVVFDPDLVKD----EDIKNAIEDAG--FE 110 (997)
Q Consensus 43 ~~~~~~~~~v~gm~C~~----C~~~ie~~l~~~~gv~~~~v~~~~~~--~~v~~~~~~~~~----~~i~~~i~~~G--y~ 110 (997)
-+.-.+...-+|.+-.. -...+|++++.++||++++..-..+. ..+.++.+ .+. .++++++.+.- ..
T Consensus 51 ~p~v~V~t~~pGas~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g-~d~~~a~~ev~~~i~~~~~~LP 129 (1040)
T PRK10503 51 YPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLT-LPLDVAEQEVQAAINAATNLLP 129 (1040)
T ss_pred CCEEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHHhCC
Confidence 34445566777876544 45678889999999999987544443 44555443 232 45555555431 11
Q ss_pred hhhhcccCCCCCCCCcceecccccCC--ccCh---h-hHHHHHHhhhcCCCceeEEeecC-CCeEEEEeCCCC-----CC
Q 001906 111 AEILAESSTSGPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----IS 178 (997)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~i~g--m~C~---~-C~~~ie~~l~~~~GV~~v~v~~~-~~~~~v~~d~~~-----~~ 178 (997)
.....+...............+.+.+ +.=. . -.+.++..|+++|||.++++.-. ...+.|..||.. ++
T Consensus 130 ~~~~~~p~~~~~~~~~~pv~~~~l~~~~~~~~~L~~~~~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls 209 (1040)
T PRK10503 130 SDLPNPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLT 209 (1040)
T ss_pred CccCCCCEEEEeCCCCCceEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCC
Confidence 00000000000000000111222222 1100 1 23578999999999999987743 468999999853 67
Q ss_pred HHHHHHHHHhc
Q 001906 179 KDDIANAIEDA 189 (997)
Q Consensus 179 ~~~i~~~i~~~ 189 (997)
..++.++|...
T Consensus 210 ~~~v~~ai~~~ 220 (1040)
T PRK10503 210 SETVRTAITGA 220 (1040)
T ss_pred HHHHHHHHHHh
Confidence 88999999864
No 218
>PRK09577 multidrug efflux protein; Reviewed
Probab=76.43 E-value=1.3e+02 Score=39.48 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=82.4
Q ss_pred CceEEEEEeCCCCchh----hHHHHHHhhcCCCCeeEEEEEeecc--EEEEEECCCCcch----HHHHHHHHhcC--cch
Q 001906 44 GMRRIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQN--KADVVFDPDLVKD----EDIKNAIEDAG--FEA 111 (997)
Q Consensus 44 ~~~~~~~~v~gm~C~~----C~~~ie~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~----~~i~~~i~~~G--y~~ 111 (997)
....+...-+|.+-.- -...+|++++.++|+++++..-..+ .+.+.++.+ .+. .++.+++++.. ...
T Consensus 41 p~v~V~t~~pGasp~~VE~~Vt~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g-~d~~~a~~~V~~~v~~~~~~LP~ 119 (1032)
T PRK09577 41 PVVSIYATYPGASAQVVEESVTALIEREMNGAPGLLYTSATSSAGQASLSLTFKQG-VNADLAAVEVQNRLKTVEARLPE 119 (1032)
T ss_pred CEEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHHhCCc
Confidence 3444555666766433 4457888999999999876644443 444555443 233 35555555432 111
Q ss_pred hhhcccCCC-CCCCCcceecccccCC--ccCh---h-hHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCC-----CCH
Q 001906 112 EILAESSTS-GPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISK 179 (997)
Q Consensus 112 ~~~~~~~~~-~~~~~~~~~~~l~i~g--m~C~---~-C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~-----~~~ 179 (997)
..-.+.... .........+.+..++ .+-. . -.+.++..|++++||.+++++-...++.|..||.. ++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~ 199 (1032)
T PRK09577 120 PVRRDGIQVEKAADNIQLIVSLTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTA 199 (1032)
T ss_pred ccccCCceEeccCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCH
Confidence 100000000 0000001112222221 1111 1 24678999999999999999876667778778753 678
Q ss_pred HHHHHHHHhcCCc
Q 001906 180 DDIANAIEDAGFE 192 (997)
Q Consensus 180 ~~i~~~i~~~Gy~ 192 (997)
.++.++|+..+.+
T Consensus 200 ~~V~~~l~~~n~~ 212 (1032)
T PRK09577 200 SDIASAVRAHNAR 212 (1032)
T ss_pred HHHHHHHHHhCCc
Confidence 8999999876544
No 219
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=76.34 E-value=13 Score=26.69 Aligned_cols=57 Identities=49% Similarity=0.886 Sum_probs=41.2
Q ss_pred cCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCC
Q 001906 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGF 191 (997)
Q Consensus 134 i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy 191 (997)
+.++.|..|...++..+...+++.....++......+.++.. .....+...+...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 60 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPE-VSPEELLEAIEDAGY 60 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCC-CCHHHHHHHHHHcCC
Confidence 568899999999999888888988778888777777777543 344444444444444
No 220
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=76.31 E-value=41 Score=42.51 Aligned_cols=71 Identities=8% Similarity=0.037 Sum_probs=54.4
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEec-----CCCcHhHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHcC
Q 001906 771 VESFVVELEESARTGILVAYDDNLIGVMGIA-----DPVKREAAVVVEGLLKM-GVRPVMVTGDNWRTAHAVAREIG 841 (997)
Q Consensus 771 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~-----d~~~~~~~~~i~~l~~~-gi~~~i~Tgd~~~~a~~ia~~~g 841 (997)
.......|.....+.+++.|||+++....-. -.+.++..+++++|.+. +-.++|+||++..........++
T Consensus 495 ~~~~~~~y~~a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~ 571 (797)
T PLN03063 495 EQDVIQQYSKSNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYN 571 (797)
T ss_pred HHHHHHHHHhccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCC
Confidence 4456677778788999999999998532211 12678999999999876 67899999999988887776543
No 221
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=74.30 E-value=18 Score=25.91 Aligned_cols=41 Identities=46% Similarity=0.710 Sum_probs=32.7
Q ss_pred EeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEEC
Q 001906 51 GVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFD 91 (997)
Q Consensus 51 ~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~ 91 (997)
.+.++.|..|...++..+...+++.....++......+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYD 43 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEEC
Confidence 46789999999999999888888877777776666656553
No 222
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=74.18 E-value=4.3 Score=40.89 Aligned_cols=49 Identities=24% Similarity=0.508 Sum_probs=41.5
Q ss_pred hhhHHHHHHhhhcCCCceeEEeecCCCe-------------------EEEEeCCCCCCHHHHHHHHHh
Q 001906 140 AACVNSVEGILRGLPGVKRAVVALATSL-------------------GEVEYDPTVISKDDIANAIED 188 (997)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~v~~~~~~-------------------~~v~~d~~~~~~~~i~~~i~~ 188 (997)
++|-|-+|....+++||.++++-++.+. +.|.|||..++.++|++..=+
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~ 82 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFS 82 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHH
Confidence 4677888899999999999998887664 789999999999999986543
No 223
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=74.10 E-value=14 Score=39.12 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=53.9
Q ss_pred EEEEecCCCcHhHHHHHHHHHHCCCeEEEEc---CCCHHHHHH-HHHHcCCceEEeccChhhH----HHHHHHHhh--cC
Q 001906 796 GVMGIADPVKREAAVVVEGLLKMGVRPVMVT---GDNWRTAHA-VAREIGIQDVMADVMPAGK----ADAVRSFQK--DG 865 (997)
Q Consensus 796 G~i~~~d~~~~~~~~~i~~l~~~gi~~~i~T---gd~~~~a~~-ia~~~gi~~~~~~~~p~~K----~~~v~~l~~--~g 865 (997)
|++.-.+.+-+++.++|+.|+++|+++.++| |++...... +.+..|+. ++|++= ....+.+++ .+
T Consensus 7 GvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~-----~~~~~iits~~~~~~~l~~~~~~ 81 (236)
T TIGR01460 7 GVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD-----VSPDQIITSGSVTKDLLRQRFEG 81 (236)
T ss_pred CccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC-----CCHHHeeeHHHHHHHHHHHhCCC
Confidence 3344456778899999999999999999998 555554444 43437774 223221 123333433 35
Q ss_pred CEEEEEcCCcCCHHHHhcCCe
Q 001906 866 SIVAMVGDGINDSPALAAADV 886 (997)
Q Consensus 866 ~~v~~vGDg~nD~~al~~A~v 886 (997)
.+|..+|.. .....++.+++
T Consensus 82 ~~v~v~G~~-~~~~~l~~~g~ 101 (236)
T TIGR01460 82 EKVYVIGVG-ELRESLEGLGF 101 (236)
T ss_pred CEEEEECCH-HHHHHHHHcCC
Confidence 679999974 45566776654
No 224
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=73.18 E-value=5.1 Score=41.15 Aligned_cols=48 Identities=31% Similarity=0.487 Sum_probs=41.2
Q ss_pred hhhHHHHHHhhhcCCCceeEEeecCCC-------------------eEEEEeCCCCCCHHHHHHHHH
Q 001906 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIE 187 (997)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~i~ 187 (997)
++|-|-+|..+.+++||.++++-+..+ .+.|.|||..++.++|++..=
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff 118 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFW 118 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 478888999999999999999988733 478999999999999988763
No 225
>PLN02423 phosphomannomutase
Probab=73.00 E-value=5.3 Score=42.64 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=35.9
Q ss_pred ccChh--hHHHHHHHHhhcCCEEEEEcC----CcCCHHHHhc-CCeeEEec
Q 001906 848 DVMPA--GKADAVRSFQKDGSIVAMVGD----GINDSPALAA-ADVGMAIG 891 (997)
Q Consensus 848 ~~~p~--~K~~~v~~l~~~g~~v~~vGD----g~nD~~al~~-A~vgia~~ 891 (997)
++.|. .|...++.|+ ..+.|+++|| |.||.+||+. -=.++.+.
T Consensus 182 Di~~~gvnKg~al~~L~-~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~ 231 (245)
T PLN02423 182 DVFPQGWDKTYCLQFLE-DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVT 231 (245)
T ss_pred EEeeCCCCHHHHHHHhc-CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeC
Confidence 44443 6999999999 8889999999 8999999997 55778884
No 226
>PRK13748 putative mercuric reductase; Provisional
Probab=72.43 E-value=9.5 Score=46.32 Aligned_cols=66 Identities=27% Similarity=0.539 Sum_probs=54.6
Q ss_pred cccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeecc
Q 001906 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQS 198 (997)
Q Consensus 132 l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~~~ 198 (997)
+.+++|+|.+|..+++..+...+++.....++..+...+.+++. .....+...+++.||.......
T Consensus 4 i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g~~~~~~~~ 69 (561)
T PRK13748 4 LKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLGYRATLADA 69 (561)
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcCCeeeccCc
Confidence 45789999999999999999999999999999999988888653 5667777777889998765443
No 227
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=71.72 E-value=7 Score=36.83 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=45.6
Q ss_pred EEEEEECCeEEEEE--E-ecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHH
Q 001906 785 GILVAYDDNLIGVM--G-IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSF 861 (997)
Q Consensus 785 ~i~va~~~~~lG~i--~-~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l 861 (997)
.+++-.||+++--= . ..+++.+++.+++++|+++|+.++++||++..... ...|. +.++.-....++|
T Consensus 3 ~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~---~n~~~------i~~~~~~~t~~wL 73 (126)
T TIGR01689 3 RLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYE---GNVGK------INIHTLPIIILWL 73 (126)
T ss_pred EEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhh---ccccc------cchhhHHHHHHHH
Confidence 45556677764210 0 12567899999999999999999999999887644 11222 3344444555666
Q ss_pred hhc
Q 001906 862 QKD 864 (997)
Q Consensus 862 ~~~ 864 (997)
.+.
T Consensus 74 ~k~ 76 (126)
T TIGR01689 74 NQH 76 (126)
T ss_pred HHc
Confidence 554
No 228
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=70.97 E-value=4.5 Score=43.06 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=51.5
Q ss_pred cHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEe-----------ccChhh--HHHHHHHHhhc-CCEEEE
Q 001906 805 KREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA-----------DVMPAG--KADAVRSFQKD-GSIVAM 870 (997)
Q Consensus 805 ~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~-----------~~~p~~--K~~~v~~l~~~-g~~v~~ 870 (997)
.++..++++.|+++|++. ++|+.+...+.......|...++. .-.|+. =..+++.+... .++++|
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 589999999999999997 778765554433333333221111 111221 12234444322 357999
Q ss_pred EcCC-cCCHHHHhcCCeeE
Q 001906 871 VGDG-INDSPALAAADVGM 888 (997)
Q Consensus 871 vGDg-~nD~~al~~A~vgi 888 (997)
|||. .+|+.+-++|++-.
T Consensus 219 vGD~~~~Di~~a~~~G~~~ 237 (242)
T TIGR01459 219 VGDSFYTDILGANRLGIDT 237 (242)
T ss_pred ECCCcHHHHHHHHHCCCeE
Confidence 9999 59999999998753
No 229
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=70.60 E-value=64 Score=35.04 Aligned_cols=91 Identities=21% Similarity=0.363 Sum_probs=62.3
Q ss_pred HHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC----hh
Q 001906 777 ELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM----PA 852 (997)
Q Consensus 777 ~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~----p~ 852 (997)
.+...|..++++.-+..-+| +.+.-.|+..++.+.- ..+++=+....+...+|+..+++ ++-.++ |-
T Consensus 65 a~~qlGg~~~~l~~~~~Qlg----r~Esi~DTArVLsr~~----D~I~~R~~~~~~ve~lA~~s~VP-ViNgLtD~~HP~ 135 (310)
T COG0078 65 AATQLGGHAIYLGPGDSQLG----RGESIKDTARVLSRMV----DAIMIRGFSHETLEELAKYSGVP-VINGLTDEFHPC 135 (310)
T ss_pred HHHHcCCCeEEeCCCccccC----CCCcHHHHHHHHHhhh----heEEEecccHHHHHHHHHhCCCc-eEcccccccCcH
Confidence 45678888888887776666 4555566666666654 46778888999999999999995 555544 43
Q ss_pred hHHHHHHHHhh-----cCCEEEEEcCCcC
Q 001906 853 GKADAVRSFQK-----DGSIVAMVGDGIN 876 (997)
Q Consensus 853 ~K~~~v~~l~~-----~g~~v~~vGDg~n 876 (997)
|-..=+..+++ +|.+++++|||-|
T Consensus 136 Q~LADl~Ti~E~~g~l~g~k~a~vGDgNN 164 (310)
T COG0078 136 QALADLMTIKEHFGSLKGLKLAYVGDGNN 164 (310)
T ss_pred HHHHHHHHHHHhcCcccCcEEEEEcCcch
Confidence 43332222222 4789999999944
No 230
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=70.55 E-value=35 Score=32.77 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=57.6
Q ss_pred HHHHHcCCeEEEEEE--------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCC-e-EEEEcCCC------HHHH
Q 001906 776 VELEESARTGILVAY--------------DDNLIGVMGIADPVKREAAVVVEGLLKMGV-R-PVMVTGDN------WRTA 833 (997)
Q Consensus 776 ~~~~~~g~~~i~va~--------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi-~-~~i~Tgd~------~~~a 833 (997)
.-++..|++++++.. +-.++|+-.+.....+.+++.+++|++.|. . .+++-|.. ....
T Consensus 25 ~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~ 104 (137)
T PRK02261 25 RALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEV 104 (137)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHH
Confidence 345678888888765 347889888888999999999999999965 2 34555543 4556
Q ss_pred HHHHHHcCCceEEeccCh
Q 001906 834 HAVAREIGIQDVMADVMP 851 (997)
Q Consensus 834 ~~ia~~~gi~~~~~~~~p 851 (997)
...++++|++.+|..-+|
T Consensus 105 ~~~l~~~G~~~vf~~~~~ 122 (137)
T PRK02261 105 EKKFKEMGFDRVFPPGTD 122 (137)
T ss_pred HHHHHHcCCCEEECcCCC
Confidence 678899999999985443
No 231
>PRK09579 multidrug efflux protein; Reviewed
Probab=70.50 E-value=2.8e+02 Score=36.41 Aligned_cols=143 Identities=11% Similarity=0.131 Sum_probs=78.0
Q ss_pred ceEEEEEeCCCCch----hhHHHHHHhhcCCCCeeEEEEEeeccEEEE--EECCCCcch----HHHHHHHHhcC--cchh
Q 001906 45 MRRIQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALLQNKADV--VFDPDLVKD----EDIKNAIEDAG--FEAE 112 (997)
Q Consensus 45 ~~~~~~~v~gm~C~----~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v--~~~~~~~~~----~~i~~~i~~~G--y~~~ 112 (997)
.-.+...-+|.+-. .-...+|++++.++|+++++-.-..+...+ .++.+ .+. .++++++.+.- ....
T Consensus 44 ~v~V~t~~pGaspe~vE~~Vt~plE~~L~~v~gi~~i~S~S~~G~s~I~v~f~~g-~d~~~a~~~v~~~v~~v~~~LP~~ 122 (1017)
T PRK09579 44 LITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIG-ADSDRLFTELLAKANEVKNQLPQD 122 (1017)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CCHHHHHHHHHHHHHHHHHhCCCC
Confidence 33445555665432 235678889999999999887655554444 55443 233 35555555431 1110
Q ss_pred hhcccCCCCCCCCcceecccccCC--ccCh---h-hHHHHHHhhhcCCCceeEEeec-CCCeEEEEeCCC-----CCCHH
Q 001906 113 ILAESSTSGPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVAL-ATSLGEVEYDPT-----VISKD 180 (997)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~l~i~g--m~C~---~-C~~~ie~~l~~~~GV~~v~v~~-~~~~~~v~~d~~-----~~~~~ 180 (997)
.-.+.-.... ........+.+.+ .+-. . -.+.++..|++++||.++++.- ....++|..||. .++.+
T Consensus 123 ~~~P~i~~~~-~~~~~v~~~~~~~~~~~~~~L~~~~~~~i~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~ 201 (1017)
T PRK09579 123 AEDPVLSKEA-ADASALMYISFYSEEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAG 201 (1017)
T ss_pred CCCCeEEeCC-CCCcceEEEEEECCCCCHHHHHHHHHHHHHHHhhcCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHH
Confidence 0000000000 0000011122212 1111 1 2356889999999999998653 334678888874 36889
Q ss_pred HHHHHHHhc
Q 001906 181 DIANAIEDA 189 (997)
Q Consensus 181 ~i~~~i~~~ 189 (997)
++.++|++.
T Consensus 202 dV~~al~~~ 210 (1017)
T PRK09579 202 DVTQAVRRY 210 (1017)
T ss_pred HHHHHHHHh
Confidence 999999865
No 232
>PRK13748 putative mercuric reductase; Provisional
Probab=70.41 E-value=13 Score=45.15 Aligned_cols=65 Identities=26% Similarity=0.502 Sum_probs=51.4
Q ss_pred EEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhhh
Q 001906 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (997)
Q Consensus 49 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (997)
.+.++||+|++|..+++..+...+++....+++..+...+.+++ ......+...+++.||..++.
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~-~~~~~~i~~~i~~~g~~~~~~ 67 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEV-GTSPDALTAAVAGLGYRATLA 67 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECC-CCCHHHHHHHHHHcCCeeecc
Confidence 36689999999999999999999999999999988887777643 244556666677788876543
No 233
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=68.94 E-value=1.2e+02 Score=32.64 Aligned_cols=99 Identities=12% Similarity=0.197 Sum_probs=67.7
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEE-EEcCCC-HHHHHHHHHHcC-CceEEe
Q 001906 771 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPV-MVTGDN-WRTAHAVAREIG-IQDVMA 847 (997)
Q Consensus 771 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~-i~Tgd~-~~~a~~ia~~~g-i~~~~~ 847 (997)
++++.++..+.|...+ .+-|.+-++..+.++.+++.|+..+ +++-.. ......+++... +.-+.+
T Consensus 108 ~e~F~~~~~~aGvdgv------------iipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS 175 (263)
T CHL00200 108 INKFIKKISQAGVKGL------------IIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVS 175 (263)
T ss_pred HHHHHHHHHHcCCeEE------------EecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEc
Confidence 4566777777775433 4567777999999999999999854 555554 567778888775 433322
Q ss_pred c--------cChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHH
Q 001906 848 D--------VMPAGKADAVRSFQKDGSIVAMVGDGINDSPAL 881 (997)
Q Consensus 848 ~--------~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al 881 (997)
+ ..+++-.+.++.+++.-..-.++|-|+|+....
T Consensus 176 ~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~ 217 (263)
T CHL00200 176 TTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQI 217 (263)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHH
Confidence 2 123445677888887766678889999965443
No 234
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=68.66 E-value=40 Score=32.15 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=57.9
Q ss_pred HHHHcCCeEEEEEE--------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCe--EEEEcCCC---HHH---HH
Q 001906 777 ELEESARTGILVAY--------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVR--PVMVTGDN---WRT---AH 834 (997)
Q Consensus 777 ~~~~~g~~~i~va~--------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~--~~i~Tgd~---~~~---a~ 834 (997)
.+++.|+.++.+.. +-.++|+-++--.-.+..+++++.|+++|++ .+++=|-. ... ..
T Consensus 24 ~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~ 103 (134)
T TIGR01501 24 AFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVE 103 (134)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHH
Confidence 34566777766644 4467888888888888999999999999973 45565531 111 24
Q ss_pred HHHHHcCCceEEeccChhhHHHHHHHHhh
Q 001906 835 AVAREIGIQDVMADVMPAGKADAVRSFQK 863 (997)
Q Consensus 835 ~ia~~~gi~~~~~~~~p~~K~~~v~~l~~ 863 (997)
.-++++|++.+|..-+|- .+++..+++
T Consensus 104 ~~l~~~Gv~~vF~pgt~~--~~iv~~l~~ 130 (134)
T TIGR01501 104 KRFKEMGFDRVFAPGTPP--EVVIADLKK 130 (134)
T ss_pred HHHHHcCCCEEECcCCCH--HHHHHHHHH
Confidence 568999999999865543 345555543
No 235
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=68.24 E-value=1.9e+02 Score=31.74 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=47.9
Q ss_pred hhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHH-HHHHHHhcCCceee-ec-cCCccceeeeecCccchhh
Q 001906 140 AACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDD-IANAIEDAGFEASF-VQ-SSGQDKILLQVTGVLCELD 216 (997)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~-i~~~i~~~Gy~~~~-~~-~~~~~~~~l~v~gm~c~~c 216 (997)
..|.+.+++.+++.+||++++.- +.++ ..+..+..|++... .+ ++-++...+++.. +..
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~~---------------sre~~l~~L~~~lg~~~~~~l~~nPLP~~~vV~~~~---p~~ 132 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRFI---------------SREEALKELQPWLGFGALLMLDENPLPDVFVVTPDD---PPQ 132 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEEe---------------CHHHHHHHHHHHcCchhhhcCCCCCCCceEEEEeCC---Ccc
Confidence 88999999999999999987752 3344 44444567875111 11 1223334444432 566
Q ss_pred hHHHHhhhhcCCCceEE
Q 001906 217 AHFLEGILSNFKGVRQF 233 (997)
Q Consensus 217 a~~ie~~l~~~~GV~~~ 233 (997)
...+.+.++.++||.++
T Consensus 133 ~~~i~~~l~~l~gV~~V 149 (297)
T COG2177 133 VKAIAAALRDLPGVAEV 149 (297)
T ss_pred HHHHHHHHHcCccceeh
Confidence 77777778888887664
No 236
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.50 E-value=29 Score=41.08 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=29.9
Q ss_pred eEEEEecCCCCCCCEEEecCCCcccccEEEEecc
Q 001906 449 EEREIDALLIQSGDTLKVLPGTKLPADGIVVWGT 482 (997)
Q Consensus 449 ~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~ 482 (997)
+..++|..-|+.||||-++||+.-||.+.=++|+
T Consensus 165 hlm~lP~~LLVeGDiIa~RPGQeafan~~g~~dd 198 (1354)
T KOG4383|consen 165 HLMELPRILLVEGDIIAFRPGQEAFANCEGFDDD 198 (1354)
T ss_pred eeeecceeEEEeccEEEecCCccccccccccCCC
Confidence 5688999999999999999999999988766653
No 237
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=67.10 E-value=2.3e+02 Score=35.06 Aligned_cols=70 Identities=24% Similarity=0.218 Sum_probs=36.3
Q ss_pred ChhhHHHHHHHHHcCCeEEEEEECC--------eEEEEEE-ecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Q 001906 768 PDHVESFVVELEESARTGILVAYDD--------NLIGVMG-IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 838 (997)
Q Consensus 768 ~~~~~~~~~~~~~~g~~~i~va~~~--------~~lG~i~-~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~ 838 (997)
.++..+..+++.+.|-+++.+.-|. +-+|+-. +.....++=.+.+++||++|. ++..|||-..-|-++++
T Consensus 443 R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~G~-~VaMtGDGvNDAPALa~ 521 (673)
T PRK14010 443 KDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAKGH-IVAMTGDGTNDAPALAE 521 (673)
T ss_pred cHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhCCC-EEEEECCChhhHHHHHh
Confidence 3445556666666676666554443 2234332 223333344456666666663 44556766655554443
No 238
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=65.77 E-value=9.8 Score=37.47 Aligned_cols=49 Identities=33% Similarity=0.537 Sum_probs=40.2
Q ss_pred hhhHHHHHHhhhcCCCceeEEeecCCC-------------------eEEEEeCCCCCCHHHHHHHHHh
Q 001906 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIED 188 (997)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~i~~ 188 (997)
.+|-|=+|+...+++||.++.+-.+.+ .+.|.|||..++.++|++..=+
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ 80 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFE 80 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhe
Confidence 467777889999999999988876544 4689999999999999987643
No 239
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=65.36 E-value=10 Score=39.18 Aligned_cols=104 Identities=15% Similarity=0.170 Sum_probs=63.1
Q ss_pred CCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec-------------cCCccceeeeecCccchhhhHH
Q 001906 153 LPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ-------------SSGQDKILLQVTGVLCELDAHF 219 (997)
Q Consensus 153 ~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~~-------------~~~~~~~~l~v~gm~c~~ca~~ 219 (997)
.+||.-.+..-.++...+.-++. +..+-++.|+..||+-.... ++.+++.++. -.-+++
T Consensus 42 ~~gI~A~K~~~~~g~~~l~Ve~~--~fa~Av~iL~~~GlPr~~f~~l~d~Fp~dgLVsSP~eEkaR~~------~~~eQ~ 113 (246)
T COG4669 42 SHGINAEKKADKDGGTSLLVEES--DFAEAVEILNQNGLPRKKFTTLGDIFPKDGLVSSPTEEKARLN------YAKEQQ 113 (246)
T ss_pred HcCCcceeeccCCCceEEEEcHH--HHHHHHHHHHhcCCCCCCCCcHHHhCCcccccCCcHHHHHHHH------HHHHHH
Confidence 36777767767777777765432 23344555668898754311 1122333321 234678
Q ss_pred HHhhhhcCCCceEEEeecC--------------CCeEEEEecCCC---CCchhhhhhhcccC
Q 001906 220 LEGILSNFKGVRQFRFDKI--------------SGELEVLFDPEA---LSSRSLVDGIAGRS 264 (997)
Q Consensus 220 ie~~l~~~~GV~~~~vn~~--------------~~~~~V~~d~~~---~~~~~i~~~i~~~g 264 (997)
+|+.|++++||.+++|+-. +..+.++|.|+. .-..+|.+.+++..
T Consensus 114 le~tLs~mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky~~~~nl~~~v~~IK~LV~nSv 175 (246)
T COG4669 114 LEQTLSKMDGVISARVHISLPEDDDEGKNALPSSASVFIKYSPDVNLSIYVSQIKRLVANSV 175 (246)
T ss_pred HHHHHHhcCceEEEEEEEEcCCCCccCCCCCCceeEEEEEecCCCChhHhHHHHHHHHHhcc
Confidence 9999999999987766422 356678898764 23356666666544
No 240
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=64.91 E-value=2e+02 Score=37.97 Aligned_cols=145 Identities=18% Similarity=0.178 Sum_probs=77.5
Q ss_pred CceEEEEEeCCCCch----hhHHHHHHhhcCCCCeeEEEEEee--ccEEEEEECCCCcch----HHHHHHHHhcC--cch
Q 001906 44 GMRRIQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALL--QNKADVVFDPDLVKD----EDIKNAIEDAG--FEA 111 (997)
Q Consensus 44 ~~~~~~~~v~gm~C~----~C~~~ie~~l~~~~gv~~~~v~~~--~~~~~v~~~~~~~~~----~~i~~~i~~~G--y~~ 111 (997)
.+-.++..-+|-+-. .-...+|++++.++|++++...-. .....+.++.+ .+. +++++.+.+.. +..
T Consensus 45 ~~i~V~~~~pGas~~~ve~~vt~piE~~l~~v~gv~~v~S~s~~g~s~i~v~f~~~-~d~~~a~~~v~~~v~~~~~~LP~ 123 (1051)
T TIGR00914 45 VQVQINTSAPGYSPLEVEQRVTYPIETAMAGLPGLETTRSLSRYGLSQVTVIFKDG-TDLYFARQLVNERLQQARDNLPE 123 (1051)
T ss_pred cEEEEEEecCCCCHHHHHHHcCHHHHHHhcCCCCeeEEEEEccCceEEEEEEEeCC-CCHHHHHHHHHHHHHHHHhhCCC
Confidence 334444555665432 233679999999999998865433 33445556533 233 45555665432 110
Q ss_pred hhhcccCCCCCCCCcceecccccCC-----------ccC-h--h-hHHHHHHhhhcCCCceeEEeecC-CCeEEEEeCCC
Q 001906 112 EILAESSTSGPKPQGTIVGQYTIGG-----------MTC-A--A-CVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPT 175 (997)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~i~g-----------m~C-~--~-C~~~ie~~l~~~~GV~~v~v~~~-~~~~~v~~d~~ 175 (997)
. .++. ..+..........+.+.+ ..- . . -...++..|++++||.++.+.-. ...+.|..||.
T Consensus 124 ~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~L~~i~GV~~V~~~G~~~~ei~V~iD~~ 201 (1051)
T TIGR00914 124 G-VSPE-MGPISTGLGEIFLYTVEAEEGARKKDGGAYTLTDLRTIQDWIIRPQLRTVPGVAEVNSIGGYVKQFLVAPDPE 201 (1051)
T ss_pred C-CCCC-cCCCCCCcceeEEEEecccccccccccCCCCHHHHHHHHHHHHHHHHhcCCCceEeeecCCceEEEEEEECHH
Confidence 0 0000 000000000011222211 111 0 1 12247788999999999998643 35778888885
Q ss_pred C-----CCHHHHHHHHHhcCC
Q 001906 176 V-----ISKDDIANAIEDAGF 191 (997)
Q Consensus 176 ~-----~~~~~i~~~i~~~Gy 191 (997)
. ++..++.++|.....
T Consensus 202 kl~~~glt~~dV~~~l~~~~~ 222 (1051)
T TIGR00914 202 KLAAYGLSLADVVNALERNNQ 222 (1051)
T ss_pred HHHHcCCCHHHHHHHHHHhCc
Confidence 3 678899999987643
No 241
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=64.88 E-value=12 Score=36.73 Aligned_cols=49 Identities=35% Similarity=0.543 Sum_probs=40.4
Q ss_pred hhhHHHHHHhhhcCCCceeEEeecCCC-------------------eEEEEeCCCCCCHHHHHHHHHh
Q 001906 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIED 188 (997)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~i~~ 188 (997)
++|-|-.|..+.+++||.++.+-+..+ -+.|.|||..++.++|++..=+
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~ 74 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFR 74 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHH
Confidence 468888999999999999999877554 5689999999999999887644
No 242
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=62.95 E-value=1.7e+02 Score=31.89 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=69.9
Q ss_pred EEEEEEecCCCcHhHHHHHHHHHHCCCeEE--------EEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcC
Q 001906 794 LIGVMGIADPVKREAAVVVEGLLKMGVRPV--------MVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 865 (997)
Q Consensus 794 ~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~--------i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g 865 (997)
-++++.=.-...++..+.++.|++..-... -.|-+....+..+|+++.+.-+.+.-....-.++.+..++.+
T Consensus 156 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~ 235 (281)
T PF02401_consen 156 KVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHG 235 (281)
T ss_dssp CEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCT
T ss_pred eEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhC
Confidence 466677777778889999999998866554 347777888888888877766777666666677888888888
Q ss_pred CEEEEEcCCcCCH--HHHhcC-CeeEEecCCcH
Q 001906 866 SIVAMVGDGINDS--PALAAA-DVGMAIGAGTD 895 (997)
Q Consensus 866 ~~v~~vGDg~nD~--~al~~A-~vgia~~~~~~ 895 (997)
..+.+|.+- .|. ..|+.+ .|||.-|.+++
T Consensus 236 ~~t~~Ie~~-~el~~~~l~~~~~VGItaGASTP 267 (281)
T PF02401_consen 236 KPTYHIETA-DELDPEWLKGVKKVGITAGASTP 267 (281)
T ss_dssp TCEEEESSG-GG--HHHHTT-SEEEEEE-TTS-
T ss_pred CCEEEeCCc-cccCHhHhCCCCEEEEEccCCCC
Confidence 888888774 455 457777 59999985443
No 243
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=61.32 E-value=54 Score=30.98 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=54.1
Q ss_pred HHHHcCCeEEEEEE--------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCC-eE-EEEcCCCH------HHHH
Q 001906 777 ELEESARTGILVAY--------------DDNLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNW------RTAH 834 (997)
Q Consensus 777 ~~~~~g~~~i~va~--------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi-~~-~i~Tgd~~------~~a~ 834 (997)
.++..|+.++.+.. +-.++|+-++.-.-.+..+++++.|+++|+ .+ +++-|-.. ....
T Consensus 22 ~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~ 101 (128)
T cd02072 22 AFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVE 101 (128)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHH
Confidence 34567777776654 447889989988999999999999999998 44 44545421 3344
Q ss_pred HHHHHcCCceEEeccC
Q 001906 835 AVAREIGIQDVMADVM 850 (997)
Q Consensus 835 ~ia~~~gi~~~~~~~~ 850 (997)
...+++|++.+|..=+
T Consensus 102 ~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 102 KRFKEMGFDRVFAPGT 117 (128)
T ss_pred HHHHHcCCCEEECcCC
Confidence 6688999999997543
No 244
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=60.86 E-value=14 Score=35.92 Aligned_cols=49 Identities=29% Similarity=0.477 Sum_probs=39.9
Q ss_pred hhhHHHHHHhhhcCCCceeEEeecCC-------------------CeEEEEeCCCCCCHHHHHHHHHh
Q 001906 140 AACVNSVEGILRGLPGVKRAVVALAT-------------------SLGEVEYDPTVISKDDIANAIED 188 (997)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~v~~~~-------------------~~~~v~~d~~~~~~~~i~~~i~~ 188 (997)
++|-|-+|....+++||.++++-++. +.+.|.|||..++.++|++..=+
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~ 74 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWE 74 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHH
Confidence 46888899999999999998876643 34679999999999999886533
No 245
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=59.81 E-value=31 Score=37.21 Aligned_cols=102 Identities=16% Similarity=0.266 Sum_probs=65.5
Q ss_pred CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH---HcCCceEEeccChhhHHHHH
Q 001906 782 ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR---EIGIQDVMADVMPAGKADAV 858 (997)
Q Consensus 782 g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~---~~gi~~~~~~~~p~~K~~~v 858 (997)
+..++.+..|+ ++-..+.+-|++.++++.|++.|-++.++|...-.+-+..++ ++|+.++-.+--...-..+.
T Consensus 21 ~~DtfifDcDG----VlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a 96 (306)
T KOG2882|consen 21 SFDTFIFDCDG----VLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSSAYAIA 96 (306)
T ss_pred hcCEEEEcCCc----ceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccChHHHHH
Confidence 34555555554 444578888999999999999999999999988887777765 56775433222222233445
Q ss_pred HHHhhc---CCEEEEEc-CCcCCHHHHhcCCeeEE
Q 001906 859 RSFQKD---GSIVAMVG-DGINDSPALAAADVGMA 889 (997)
Q Consensus 859 ~~l~~~---g~~v~~vG-Dg~nD~~al~~A~vgia 889 (997)
..|++. +++|..+| +|+++ -|++|++-..
T Consensus 97 ~ylk~~~~~~k~Vyvig~~gi~~--eL~~aG~~~~ 129 (306)
T KOG2882|consen 97 DYLKKRKPFGKKVYVIGEEGIRE--ELDEAGFEYF 129 (306)
T ss_pred HHHHHhCcCCCeEEEecchhhhH--HHHHcCceee
Confidence 555432 46666665 45555 4666764433
No 246
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.34 E-value=41 Score=31.43 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=44.8
Q ss_pred CeEEEEEEecCCCcHhHHHHHHHHHHCCC-eE-EEEcCCCHHHHHHHHHHcCCceEEeccCh
Q 001906 792 DNLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNWRTAHAVAREIGIQDVMADVMP 851 (997)
Q Consensus 792 ~~~lG~i~~~d~~~~~~~~~i~~l~~~gi-~~-~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p 851 (997)
-.++++-.......+.+++.+++|++.|. ++ +++-|.....-....++.|++.+|..=++
T Consensus 51 ~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 51 VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCC
Confidence 35677777778888999999999999977 43 55666655555666779999988765443
No 247
>PLN02591 tryptophan synthase
Probab=59.17 E-value=1.1e+02 Score=32.73 Aligned_cols=110 Identities=17% Similarity=0.298 Sum_probs=71.1
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEE-EEcCCC-HHHHHHHHHHc-CCceEEe
Q 001906 771 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPV-MVTGDN-WRTAHAVAREI-GIQDVMA 847 (997)
Q Consensus 771 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~-i~Tgd~-~~~a~~ia~~~-gi~~~~~ 847 (997)
++++.+...+.|...+. +-|-+-++..+..+.+++.|+..+ ++|-.. ....+.+++.. |+.-+.+
T Consensus 95 ~~~F~~~~~~aGv~Gvi------------ipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs 162 (250)
T PLN02591 95 IDKFMATIKEAGVHGLV------------VPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVS 162 (250)
T ss_pred HHHHHHHHHHcCCCEEE------------eCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEee
Confidence 45566677777754332 235566999999999999999855 555555 35677777765 4433223
Q ss_pred cc--------ChhhHHHHHHHHhhcCCEEEEEcCCcC---CHHHHhcC-CeeEEecC
Q 001906 848 DV--------MPAGKADAVRSFQKDGSIVAMVGDGIN---DSPALAAA-DVGMAIGA 892 (997)
Q Consensus 848 ~~--------~p~~K~~~v~~l~~~g~~v~~vGDg~n---D~~al~~A-~vgia~~~ 892 (997)
+. .|++-.+.++.+++....-+++|-|++ |+..+... -=|+-+|+
T Consensus 163 ~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 163 STGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 21 245556778888887777888999999 44544443 22455543
No 248
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=59.03 E-value=38 Score=35.37 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=53.1
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHH----HHHHHHHcCCceEEe-----ccChhhHHHHHHHHhhcCCEEEEEcCC
Q 001906 804 VKREAAVVVEGLLKMGVRPVMVTGDNWRT----AHAVAREIGIQDVMA-----DVMPAGKADAVRSFQKDGSIVAMVGDG 874 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~----a~~ia~~~gi~~~~~-----~~~p~~K~~~v~~l~~~g~~v~~vGDg 874 (997)
+-||+.+.++..-++|..+..+|.+.... +..=.++.|+..+-- .-.-..|..--+..++.-+.|+.|||.
T Consensus 123 ~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~k~Ke~R~~~v~k~~~iVm~vGDN 202 (274)
T COG2503 123 AVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDKKSKEVRRQAVEKDYKIVMLVGDN 202 (274)
T ss_pred cCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCCCcHHHHHHHHhhccceeeEecCc
Confidence 44899999999999999999999887665 455556677764221 111223433444444566789999999
Q ss_pred cCCHHHH
Q 001906 875 INDSPAL 881 (997)
Q Consensus 875 ~nD~~al 881 (997)
.+|-...
T Consensus 203 l~DF~d~ 209 (274)
T COG2503 203 LDDFGDN 209 (274)
T ss_pred hhhhcch
Confidence 9986544
No 249
>PLN02645 phosphoglycolate phosphatase
Probab=58.86 E-value=19 Score=40.01 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=39.3
Q ss_pred HHHHHhhcCCEEEEEcCCc-CCHHHHhcCCe---eEEecCCcH-HHH-----HhcCEEEecCChhhHHHHHH
Q 001906 857 AVRSFQKDGSIVAMVGDGI-NDSPALAAADV---GMAIGAGTD-IAI-----EAADYVLMRNSLEDVIIAID 918 (997)
Q Consensus 857 ~v~~l~~~g~~v~~vGDg~-nD~~al~~A~v---gia~~~~~~-~~~-----~~ad~vl~~~~~~~l~~~i~ 918 (997)
+++.+....+.++||||.. +|+.+-++|++ ++..|..+. ... ..+|+++ +++..+.++++
T Consensus 239 a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~--~~~~~l~~~~~ 308 (311)
T PLN02645 239 LANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYT--SKISDFLTLKA 308 (311)
T ss_pred HHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEE--CCHHHHHHHhh
Confidence 3344444567899999997 99999999994 444453332 222 2468877 77777766543
No 250
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=58.51 E-value=14 Score=39.77 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=40.7
Q ss_pred hhhHHHHHHhhhcCCCceeEEeecCCC-------------------eEEEEeCCCCCCHHHHHHHHH
Q 001906 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIE 187 (997)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~i~ 187 (997)
++|-|-+|..+.+++||.++++-++.+ .+.|+|||..++.++|++..=
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~ 200 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFF 200 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 478888999999999999998877554 378999999999999988653
No 251
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=56.58 E-value=45 Score=27.52 Aligned_cols=56 Identities=25% Similarity=0.385 Sum_probs=41.2
Q ss_pred ccccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001906 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (997)
Q Consensus 131 ~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~ 196 (997)
++.+.|..|+...-++.+++++++. .+.+.|..|.. ...++|...++..||.....
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~-~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDP-AAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESST-THHHHHHHHHHHHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCc-cHHHHHHHHHHHCCCEEEEE
Confidence 4567899999999999999998643 24455665543 46789999999999985433
No 252
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=56.21 E-value=53 Score=33.92 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=40.3
Q ss_pred hhhHHHHHHhhcCCCCeeEEEEEeecc-------------------EEEEEECCCCcchHHHHHHHH
Q 001906 58 AACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNAIE 105 (997)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~ 105 (997)
++|=|.+|..+.+++||.++.+-+..+ .+.|.||+..++.+++.+..=
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff 118 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFW 118 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 689999999999999999999977633 477889998888888887664
No 253
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=55.58 E-value=20 Score=40.07 Aligned_cols=86 Identities=16% Similarity=0.146 Sum_probs=56.3
Q ss_pred EEEEecCCCcHhHHHHHHHHHHC----CCeEEEEcCCC---HH-HHHHHHHHcCCceEEeccChhh----HHHHHHHHhh
Q 001906 796 GVMGIADPVKREAAVVVEGLLKM----GVRPVMVTGDN---WR-TAHAVAREIGIQDVMADVMPAG----KADAVRSFQK 863 (997)
Q Consensus 796 G~i~~~d~~~~~~~~~i~~l~~~----gi~~~i~Tgd~---~~-~a~~ia~~~gi~~~~~~~~p~~----K~~~v~~l~~ 863 (997)
|++...+++-+++.+++++|+.. |+++.++|... .. .+..+.+++|+. +.+++ ...+...+++
T Consensus 9 GvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~-----~~~~~i~~s~~~~~~ll~~ 83 (321)
T TIGR01456 9 GVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD-----VSPLQVIQSHSPYKSLVNK 83 (321)
T ss_pred CceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC-----CCHHHHHhhhHHHHHHHHH
Confidence 45566788899999999999999 99999999765 33 356666788874 22222 1122233333
Q ss_pred cCCEEEEEcCCcCCHHHHhcCCee
Q 001906 864 DGSIVAMVGDGINDSPALAAADVG 887 (997)
Q Consensus 864 ~g~~v~~vGDg~nD~~al~~A~vg 887 (997)
.+.+++++|.+. -...++.+++-
T Consensus 84 ~~~~v~viG~~~-~~~~l~~~G~~ 106 (321)
T TIGR01456 84 YEKRILAVGTGS-VRGVAEGYGFQ 106 (321)
T ss_pred cCCceEEEeChH-HHHHHHHcCCc
Confidence 344689999864 45566655543
No 254
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=55.49 E-value=55 Score=42.35 Aligned_cols=119 Identities=19% Similarity=0.268 Sum_probs=77.0
Q ss_pred HHHHHHhhhcCCCceeEEeecCCC--eEEEEeCCCCCCHH----HHHHHHHhcCC--ceee-------eccCCccceeee
Q 001906 143 VNSVEGILRGLPGVKRAVVALATS--LGEVEYDPTVISKD----DIANAIEDAGF--EASF-------VQSSGQDKILLQ 207 (997)
Q Consensus 143 ~~~ie~~l~~~~GV~~v~v~~~~~--~~~v~~d~~~~~~~----~i~~~i~~~Gy--~~~~-------~~~~~~~~~~l~ 207 (997)
...+|+.++.++|+++++-.-..+ .++++|+.+ .+++ ++.+.+.+... +... ...++.--..+.
T Consensus 63 t~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~-~d~d~A~~~V~~kv~~~~~~LP~~~~~p~v~~~~~~~~~i~~~a 141 (1009)
T COG0841 63 TQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG-TDPDTAAVQVQNKIQQAESRLPSGVQQPGVTVEKSSSNPLLILA 141 (1009)
T ss_pred hHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC-CChHHHHHHHHHHHHHHHhcCCCccCCCceEeccCCCceEEEEE
Confidence 577899999999998776544444 566777765 3444 66777765431 1111 111111122344
Q ss_pred ecC--cc----chhhhHHHHhhhhcCCCceEEEeecC-CCeEEEEecCCC-----CCchhhhhhhcc
Q 001906 208 VTG--VL----CELDAHFLEGILSNFKGVRQFRFDKI-SGELEVLFDPEA-----LSSRSLVDGIAG 262 (997)
Q Consensus 208 v~g--m~----c~~ca~~ie~~l~~~~GV~~~~vn~~-~~~~~V~~d~~~-----~~~~~i~~~i~~ 262 (997)
+.+ +. ...-+..++..|++.+||.++++... ...+.|..||.+ +++.++...|+.
T Consensus 142 l~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~~ 208 (1009)
T COG0841 142 LTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRA 208 (1009)
T ss_pred EEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 443 32 11235568999999999999999877 778889999975 677888888764
No 255
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=54.11 E-value=23 Score=35.32 Aligned_cols=50 Identities=16% Similarity=0.359 Sum_probs=41.6
Q ss_pred hhhHHHHHHhhcCCCCeeEEEEEeeccE-------------------EEEEECCCCcchHHHHHHHHhc
Q 001906 58 AACSNSVEGALMGLKGVAKASVALLQNK-------------------ADVVFDPDLVKDEDIKNAIEDA 107 (997)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~~~~~~-------------------~~v~~~~~~~~~~~i~~~i~~~ 107 (997)
++|=|.+|..+.+++||.++.+-+..+. +.|.||+..++.+++.+..-+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~ 78 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQI 78 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 6899999999999999999998766554 7789999988888888766433
No 256
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.42 E-value=62 Score=35.50 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=34.2
Q ss_pred cChhhHHHHHHHHh--hcCCEEEEEcCC-cCCHH---HHhcCCeeEEecC----CcHHHHHhcCEEEec
Q 001906 849 VMPAGKADAVRSFQ--KDGSIVAMVGDG-INDSP---ALAAADVGMAIGA----GTDIAIEAADYVLMR 907 (997)
Q Consensus 849 ~~p~~K~~~v~~l~--~~g~~v~~vGDg-~nD~~---al~~A~vgia~~~----~~~~~~~~ad~vl~~ 907 (997)
++|..=.++++... -.|+.|+++|-| .-=.| +|..++..+.+-+ ........||+++..
T Consensus 141 cTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsa 209 (301)
T PRK14194 141 CTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAA 209 (301)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEe
Confidence 34444344444443 248999999997 43333 4556666655531 223445678998864
No 257
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=52.88 E-value=40 Score=27.83 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=42.2
Q ss_pred EEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhhh
Q 001906 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (997)
Q Consensus 49 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (997)
++.+.|+.|+...-.+.+++.+++.- ..+.+..+.. ....++....+..||+....
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~-~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDP-AAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESST-THHHHHHHHHHHHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCc-cHHHHHHHHHHHCCCEEEEE
Confidence 57899999999999999999997543 3344555544 56789999999999986443
No 258
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.51 E-value=3.4e+02 Score=29.17 Aligned_cols=97 Identities=21% Similarity=0.247 Sum_probs=63.3
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEE-EcCCC-HHHHHHHHHHc-CCceEEe
Q 001906 771 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVM-VTGDN-WRTAHAVAREI-GIQDVMA 847 (997)
Q Consensus 771 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i-~Tgd~-~~~a~~ia~~~-gi~~~~~ 847 (997)
.++..+...+.|...+. . -|-+-++..+.++.+++.|+..+. +|-.. ......+++.. |+.-+.+
T Consensus 106 ~e~f~~~~~~aGvdGvi-----------i-pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs 173 (258)
T PRK13111 106 VERFAADAAEAGVDGLI-----------I-PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVS 173 (258)
T ss_pred HHHHHHHHHHcCCcEEE-----------E-CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 34566666777654333 2 355668999999999999998655 77665 45677777664 3222212
Q ss_pred c--------cChhhHHHHHHHHhhcCCEEEEEcCCcCCHH
Q 001906 848 D--------VMPAGKADAVRSFQKDGSIVAMVGDGINDSP 879 (997)
Q Consensus 848 ~--------~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~ 879 (997)
. -.|.+-.+.++.+++....-+++|-|+++..
T Consensus 174 ~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e 213 (258)
T PRK13111 174 RAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPE 213 (258)
T ss_pred CCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHH
Confidence 2 1234455688888887667778899996643
No 259
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.34 E-value=80 Score=27.45 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=46.7
Q ss_pred eEEEEEeCCCCchhhHHHHHHhhcCCCCeeEEEE-----EeeccEEEEEECCCCcchHHHHHHHHhcCcchhhh
Q 001906 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASV-----ALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (997)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v-----~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (997)
+++.+.+---+-..-.--+-+.|++++||..+++ |..+....++...+..+-+++.+.+++.|.-++.+
T Consensus 6 RRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSi 79 (97)
T COG1888 6 RRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSI 79 (97)
T ss_pred eeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence 3444443333322333345567888999887764 55667777777777789999999999999877544
No 260
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=49.72 E-value=81 Score=31.64 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=67.4
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCceEEe-ccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhc
Q 001906 806 REAAVVVEGLLKMGVRPVMVTGDNWRT-AHAVAREIGIQDVMA-DVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAA 883 (997)
Q Consensus 806 ~~~~~~i~~l~~~gi~~~i~Tgd~~~~-a~~ia~~~gi~~~~~-~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~ 883 (997)
.|..+++.++++.+-++.+++=.+... ...+.+.+|++-... --++++=...++.++..|- -+.+|++.- ....+.
T Consensus 64 ~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~-~viVGg~~~-~~~A~~ 141 (176)
T PF06506_consen 64 FDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGV-DVIVGGGVV-CRLARK 141 (176)
T ss_dssp HHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT---EEEESHHH-HHHHHH
T ss_pred hHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCC-cEEECCHHH-HHHHHH
Confidence 456666666676677777766555443 777888888863222 2357777788999998995 456777631 222233
Q ss_pred CCeeEEecCCcHHHHHhcCEEEecCChhhHHHHHHHHHHHHHHHHH
Q 001906 884 ADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRL 929 (997)
Q Consensus 884 A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~ 929 (997)
.+ -..++...+.+++..++..++++.+..++
T Consensus 142 ~g---------------l~~v~i~sg~esi~~Al~eA~~i~~~~~~ 172 (176)
T PF06506_consen 142 LG---------------LPGVLIESGEESIRRALEEALRIARARRR 172 (176)
T ss_dssp TT---------------SEEEESS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cC---------------CcEEEEEecHHHHHHHHHHHHHHHHHHHH
Confidence 32 24566667788899999999998887764
No 261
>PLN02423 phosphomannomutase
Probab=47.27 E-value=40 Score=35.96 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=37.4
Q ss_pred EEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHH
Q 001906 785 GILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHA 835 (997)
Q Consensus 785 ~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ 835 (997)
.+++-.||+++- =..++.+...++|++|++. ++++++||+.......
T Consensus 9 i~~~D~DGTLl~---~~~~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~ 55 (245)
T PLN02423 9 IALFDVDGTLTA---PRKEATPEMLEFMKELRKV-VTVGVVGGSDLSKISE 55 (245)
T ss_pred EEEEeccCCCcC---CCCcCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHH
Confidence 445777888873 2456889999999999987 9999999997776543
No 262
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=47.07 E-value=1.8e+02 Score=30.90 Aligned_cols=95 Identities=20% Similarity=0.288 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEE-EcCCC-HHHHHHHHH-HcCCceEEe-
Q 001906 772 ESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVM-VTGDN-WRTAHAVAR-EIGIQDVMA- 847 (997)
Q Consensus 772 ~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i-~Tgd~-~~~a~~ia~-~~gi~~~~~- 847 (997)
+++.+.+.+.|...+. +-|-+-++..+.++.+++.|++.++ ++-.. ....+.+++ ..|..-+.+
T Consensus 94 ~~fi~~~~~aG~~gii------------ipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~ 161 (242)
T cd04724 94 ERFLRDAKEAGVDGLI------------IPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSR 161 (242)
T ss_pred HHHHHHHHHCCCcEEE------------ECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeC
Confidence 4566667777754332 2344457888999999999998765 44443 455677777 666643322
Q ss_pred -----ccC--hhhHHHHHHHHhhcCCEEEEEcCCcCCH
Q 001906 848 -----DVM--PAGKADAVRSFQKDGSIVAMVGDGINDS 878 (997)
Q Consensus 848 -----~~~--p~~K~~~v~~l~~~g~~v~~vGDg~nD~ 878 (997)
.-+ +.+-.+.++.+++....-..+|-|+|+.
T Consensus 162 ~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~ 199 (242)
T cd04724 162 TGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTP 199 (242)
T ss_pred CCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCH
Confidence 111 2334466777777666778889999954
No 263
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=46.52 E-value=28 Score=34.24 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=39.7
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-EE
Q 001906 801 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-VM 846 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~-~~ 846 (997)
.-.+||++.+.+++|++. +++++.|......|..+.+.++... +|
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F 101 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYF 101 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCee
Confidence 345799999999999965 9999999999999999999999874 55
No 264
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=46.13 E-value=2.5e+02 Score=30.07 Aligned_cols=96 Identities=22% Similarity=0.314 Sum_probs=61.2
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEE-EEcCCC-HHHHHHHHHHcC-CceEEe
Q 001906 771 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPV-MVTGDN-WRTAHAVAREIG-IQDVMA 847 (997)
Q Consensus 771 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~-i~Tgd~-~~~a~~ia~~~g-i~~~~~ 847 (997)
.+++.+.+.+.|-..+ .+-|.+-++..+.++.+++.|+..+ +++-.. ......+++... ..-+.+
T Consensus 104 ~e~f~~~~~~aGvdgv------------iipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs 171 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGV------------LVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS 171 (256)
T ss_pred HHHHHHHHHHcCCCEE------------EECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE
Confidence 3456667777775433 3346666889999999999999965 565554 345667777764 443322
Q ss_pred c-----c---ChhhHHHHHHHHhhcCCEEEEEcCCcCCH
Q 001906 848 D-----V---MPAGKADAVRSFQKDGSIVAMVGDGINDS 878 (997)
Q Consensus 848 ~-----~---~p~~K~~~v~~l~~~g~~v~~vGDg~nD~ 878 (997)
. . .+.+-.+.++.+++....-.++|-|+++.
T Consensus 172 ~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~ 210 (256)
T TIGR00262 172 RAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKP 210 (256)
T ss_pred CCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCH
Confidence 1 1 12334566777776544457789999843
No 265
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=45.79 E-value=1.2e+02 Score=40.00 Aligned_cols=119 Identities=13% Similarity=0.222 Sum_probs=75.0
Q ss_pred HHHHHHhhhcCCCceeEEeecC-C--CeEEEEeCCCCCCHH----HHHHHHHhc--CCc--ee-----eeccCCccceee
Q 001906 143 VNSVEGILRGLPGVKRAVVALA-T--SLGEVEYDPTVISKD----DIANAIEDA--GFE--AS-----FVQSSGQDKILL 206 (997)
Q Consensus 143 ~~~ie~~l~~~~GV~~v~v~~~-~--~~~~v~~d~~~~~~~----~i~~~i~~~--Gy~--~~-----~~~~~~~~~~~l 206 (997)
...+|+.++.++||++++-.-. . ..+.++|+++. +.+ ++.+.+++. .++ +. ........-..+
T Consensus 62 t~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~v~~~~~~~~~~~~~~v~~~ 140 (1037)
T PRK10555 62 TQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGT-DPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTI 140 (1037)
T ss_pred hHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECCC-CHHHHHHHHHHHHHHHHHhCCCccccCCceEeCCCCCceEEE
Confidence 4678999999999999986432 2 45778887763 443 455555432 122 11 111111112334
Q ss_pred eecC----ccch---h-hhHHHHhhhhcCCCceEEEeecCCCeEEEEecCCC-----CCchhhhhhhcc
Q 001906 207 QVTG----VLCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (997)
Q Consensus 207 ~v~g----m~c~---~-ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~~d~~~-----~~~~~i~~~i~~ 262 (997)
.+.+ +.-. . -+..++..|.+.+||.++.++.....+.|..||.+ ++.+++.+.|+.
T Consensus 141 ~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~~ 209 (1037)
T PRK10555 141 AFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIES 209 (1037)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 4422 2211 1 24678899999999999999877677899999864 677888887764
No 266
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=44.59 E-value=90 Score=30.78 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC--hhhH---HHHHHHHhhcCCEEEEE-cCCcCCHH
Q 001906 807 EAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM--PAGK---ADAVRSFQKDGSIVAMV-GDGINDSP 879 (997)
Q Consensus 807 ~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~--p~~K---~~~v~~l~~~g~~v~~v-GDg~nD~~ 879 (997)
...+.=++|++.|+.++++.|+.......+++++|+..++..-. |.++ .++.+.+.+.|-.+-.+ ++..-+..
T Consensus 54 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~L~~~~ 132 (165)
T PF00875_consen 54 SLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDHTLVPPD 132 (165)
T ss_dssp HHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--SSSS-HH
T ss_pred HHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCcEEEecc
Confidence 34455567788899999999999999999999999999888643 4333 23556666666555433 33344443
No 267
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=44.28 E-value=36 Score=35.32 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=52.8
Q ss_pred CCchhhHHHHHHhhcC-----------CCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhhhc-------c
Q 001906 55 MTCAACSNSVEGALMG-----------LKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILA-------E 116 (997)
Q Consensus 55 m~C~~C~~~ie~~l~~-----------~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~-------~ 116 (997)
+.|++|..-+-+.|.. ..||.-.+..-.++...+..++ ....+-.+.+...||.-+... .
T Consensus 15 l~L~gCk~~Ly~gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~--~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~ 92 (246)
T COG4669 15 LLLTGCKVDLYTGLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEE--SDFAEAVEILNQNGLPRKKFTTLGDIFPK 92 (246)
T ss_pred HHHhcchHHHHcCCCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcH--HHHHHHHHHHHhcCCCCCCCCcHHHhCCc
Confidence 4578887544433332 3455555554455555554432 233455566778898754321 1
Q ss_pred cCCCCCCCCcceecccccCCccChhhHHHHHHhhhcCCCceeEEee
Q 001906 117 SSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVA 162 (997)
Q Consensus 117 ~~~~~~~~~~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~ 162 (997)
+.--..+.++..+..+ .=.+.+|+.|++++||.+++|.
T Consensus 93 dgLVsSP~eEkaR~~~--------~~eQ~le~tLs~mDGVi~ArV~ 130 (246)
T COG4669 93 DGLVSSPTEEKARLNY--------AKEQQLEQTLSKMDGVISARVH 130 (246)
T ss_pred ccccCCcHHHHHHHHH--------HHHHHHHHHHHhcCceEEEEEE
Confidence 1111111222222223 2368999999999999887764
No 268
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=43.02 E-value=57 Score=41.61 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHcCCeEEEEEECCeEEEEEEecC-----------CCcHhHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHH
Q 001906 770 HVESFVVELEESARTGILVAYDDNLIGVMGIAD-----------PVKREAAVVVEGLLKM-GVRPVMVTGDNWRTAHAVA 837 (997)
Q Consensus 770 ~~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d-----------~~~~~~~~~i~~l~~~-gi~~~i~Tgd~~~~a~~ia 837 (997)
+.+.....|.....+.+++.|||+++....--+ .+.+++.++++.|.+. +-.|+|+||+.........
T Consensus 578 ~~~~~~~~y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~f 657 (934)
T PLN03064 578 PPEDAIQRYLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENF 657 (934)
T ss_pred CHHHHHHHHHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHh
Confidence 345566778888889999999999987643322 2558899999999876 6789999999999988888
Q ss_pred HHcCC
Q 001906 838 REIGI 842 (997)
Q Consensus 838 ~~~gi 842 (997)
..+++
T Consensus 658 g~~~L 662 (934)
T PLN03064 658 GEFDM 662 (934)
T ss_pred CCCCc
Confidence 77654
No 269
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.99 E-value=1.5e+02 Score=31.26 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=69.0
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC-Cce---E------Ee--ccChhhHHHHHHHHh---------
Q 001906 804 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIG-IQD---V------MA--DVMPAGKADAVRSFQ--------- 862 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~g-i~~---~------~~--~~~p~~K~~~v~~l~--------- 862 (997)
+|++..+..+.|++.+|++.+.|..--.....+.++-. ... + |. ...-.-+..++..+.
T Consensus 139 lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~~ 218 (298)
T KOG3128|consen 139 LREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQNE 218 (298)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHHHhh
Confidence 68899999999999999999988766666666555433 321 0 00 000001112222221
Q ss_pred -------hcCCEEEEEcCCcCCHHHHhcC-Ce----eEEecCC-----cHHHHHhcCEEEecCChhhHHHHH
Q 001906 863 -------KDGSIVAMVGDGINDSPALAAA-DV----GMAIGAG-----TDIAIEAADYVLMRNSLEDVIIAI 917 (997)
Q Consensus 863 -------~~g~~v~~vGDg~nD~~al~~A-~v----gia~~~~-----~~~~~~~ad~vl~~~~~~~l~~~i 917 (997)
..+..|...||.+.|+-|-.-+ ++ -|..++. -+.-.+.-|+++..|....++.-+
T Consensus 219 s~yf~~~~~~~nVillGdsigdl~ma~gv~~~~~iLkig~l~d~vee~~~~ymd~ydIvL~~D~tldv~~s~ 290 (298)
T KOG3128|consen 219 SEYFHQLAGRVNVILLGDSIGDLHMADGVPRVGHILKIGYLNDSVEEALEKYMDSYDIVLVHDETLDVANSI 290 (298)
T ss_pred hHHHhhccCCceEEEeccccccchhhcCCcccccceeeecccchHHHHHHHHHhhcceEEecCcccchhHHH
Confidence 1256799999999998876422 22 2344332 123456789999998877666543
No 270
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=41.97 E-value=49 Score=32.43 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=39.9
Q ss_pred hhhHHHHHHhhcCCCCeeEEEEEeecc--------------EEEEEECCCCcchHHHHHHHHh
Q 001906 58 AACSNSVEGALMGLKGVAKASVALLQN--------------KADVVFDPDLVKDEDIKNAIED 106 (997)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~~~~~--------------~~~v~~~~~~~~~~~i~~~i~~ 106 (997)
++|=|.+|..+.+++||.++.+-+..+ .+.|.||+..++.+++.+..=.
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~ 70 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFE 70 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHH
Confidence 679999999999999999999865442 3678899988888888876543
No 271
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=41.63 E-value=55 Score=42.94 Aligned_cols=119 Identities=19% Similarity=0.296 Sum_probs=72.0
Q ss_pred HHHHHHhhhcCCCceeEEeecCCCeE--EEEeCCCCCCHH----HHHHHHHhcC--Cce-----eeec--cCCccceeee
Q 001906 143 VNSVEGILRGLPGVKRAVVALATSLG--EVEYDPTVISKD----DIANAIEDAG--FEA-----SFVQ--SSGQDKILLQ 207 (997)
Q Consensus 143 ~~~ie~~l~~~~GV~~v~v~~~~~~~--~v~~d~~~~~~~----~i~~~i~~~G--y~~-----~~~~--~~~~~~~~l~ 207 (997)
...+|+.++.++|+++++-.-..+.. +++|+.+ .+.+ ++.+.+++.- .+. .+.. .....-..+.
T Consensus 62 t~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~-~d~~~a~~~v~~~i~~~~~~LP~~~~~p~i~~~~~~~~~i~~~~ 140 (1021)
T PF00873_consen 62 TKPLEEALSSVEGVKEIRSTSREGSSSITVEFDDG-TDIDEALQEVREKIDQIRSDLPPGVEEPQIFKFDPSDSPIMILA 140 (1021)
T ss_dssp HHHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTT-S-HHHHHHHHHHHHHHHGGGS-HHHHHHEEEEEEEECCEEEEEE
T ss_pred HHHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccc-cCHHHHHHHHHHHHHhhhhhCcccccCCceeeccCCCceeEEEE
Confidence 46789999999999999987777754 5667775 3444 3445555431 111 1111 1112223344
Q ss_pred ecCc----cch----hhhHHHHhhhhcCCCceEEEeec-CCCeEEEEecCCC-----CCchhhhhhhcc
Q 001906 208 VTGV----LCE----LDAHFLEGILSNFKGVRQFRFDK-ISGELEVLFDPEA-----LSSRSLVDGIAG 262 (997)
Q Consensus 208 v~gm----~c~----~ca~~ie~~l~~~~GV~~~~vn~-~~~~~~V~~d~~~-----~~~~~i~~~i~~ 262 (997)
+.+- +-. .....++..|++.+||..+.+.. ....+.|..||.+ ++..++.+.+..
T Consensus 141 l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~v~~~l~~ 209 (1021)
T PF00873_consen 141 LTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSDVAQALQA 209 (1021)
T ss_dssp EEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHHHHHHHHH
T ss_pred eccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHHHHHHHHH
Confidence 4433 211 12357899999999999999886 5577889999875 677888877754
No 272
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=41.50 E-value=1.8e+02 Score=30.08 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=62.6
Q ss_pred EEEEecCCCcHh--HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc------C---------hhhH--HH
Q 001906 796 GVMGIADPVKRE--AAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV------M---------PAGK--AD 856 (997)
Q Consensus 796 G~i~~~d~~~~~--~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~------~---------p~~K--~~ 856 (997)
|.+-+++ ++|+ .+..+-.|++.+ .++.|.-...-|.++.+.+||.+.|..+ . |..+ ..
T Consensus 92 ~~LPlq~-LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~ 168 (244)
T KOG3109|consen 92 GRLPLQD-LKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEK 168 (244)
T ss_pred ccCcHhh-cCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHH
Confidence 4445555 5554 567777777655 8899999999999999999998644432 2 2222 23
Q ss_pred HHHHHhhc-CCEEEEEcCCcCCHHHHhcCCee
Q 001906 857 AVRSFQKD-GSIVAMVGDGINDSPALAAADVG 887 (997)
Q Consensus 857 ~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vg 887 (997)
+.+...-. ..++.++-|+.+.+..-++-|..
T Consensus 169 a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~ 200 (244)
T KOG3109|consen 169 AMKVAGIDSPRNTYFFDDSERNIQTAKEVGLK 200 (244)
T ss_pred HHHHhCCCCcCceEEEcCchhhHHHHHhccce
Confidence 34444433 67899999999999998888754
No 273
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=40.42 E-value=77 Score=33.15 Aligned_cols=88 Identities=16% Similarity=0.047 Sum_probs=63.4
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC-Cce-----EE--ec------cChhhHHHHHHHHhhcC-CE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIG-IQD-----VM--AD------VMPAGKADAVRSFQKDG-SI 867 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~g-i~~-----~~--~~------~~p~~K~~~v~~l~~~g-~~ 867 (997)
.+.||+.+.++.|+..|+.+.++|+.+..++..-.+..+ +.. ++ .. -.|+-=....+.+...+ ++
T Consensus 92 ~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~k 171 (222)
T KOG2914|consen 92 ILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPSK 171 (222)
T ss_pred ccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCccc
Confidence 455799999999999999999999997776666555555 322 22 10 11222244566666667 89
Q ss_pred EEEEcCCcCCHHHHhcCCeeEEe
Q 001906 868 VAMVGDGINDSPALAAADVGMAI 890 (997)
Q Consensus 868 v~~vGDg~nD~~al~~A~vgia~ 890 (997)
++++.|..+=..|.++|+.-+-+
T Consensus 172 ~lVfeds~~Gv~aa~aagm~vi~ 194 (222)
T KOG2914|consen 172 CLVFEDSPVGVQAAKAAGMQVVG 194 (222)
T ss_pred eEEECCCHHHHHHHHhcCCeEEE
Confidence 99999999999999999965444
No 274
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=40.27 E-value=1.3e+02 Score=28.75 Aligned_cols=87 Identities=23% Similarity=0.272 Sum_probs=61.5
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCH----------HHHHHHHHHcCCceEEeccChhhHHHHHHHHh
Q 001906 793 NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNW----------RTAHAVAREIGIQDVMADVMPAGKADAVRSFQ 862 (997)
Q Consensus 793 ~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~----------~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~ 862 (997)
+-++++++.+.+...+-.+.+.|+++|++++-+--... .+...+-+...+.++|-+ |+.-.++++..-
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~--~e~~~~i~~eal 94 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRR--SEAAPEVAREAL 94 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecC--hhhhHHHHHHHH
Confidence 34788999999999999999999999999998843111 111222223334466665 777778888888
Q ss_pred hcCCEEEEEcCCcCCHHHH
Q 001906 863 KDGSIVAMVGDGINDSPAL 881 (997)
Q Consensus 863 ~~g~~v~~vGDg~nD~~al 881 (997)
+.+.++.+.=-|+-+-++.
T Consensus 95 ~~~~kv~W~QlGi~n~ea~ 113 (140)
T COG1832 95 EKGAKVVWLQLGIRNEEAA 113 (140)
T ss_pred hhCCCeEEEecCcCCHHHH
Confidence 8888888887776554443
No 275
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=40.24 E-value=4.1e+02 Score=34.80 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=80.6
Q ss_pred eEEEEecCCCCCCCEEEecCCCcccccEEEEeccee-eeccccCCCCcccc----cCCCCceecceEEeeeeEEEEEEEe
Q 001906 449 EEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVL----KEINSPVIGGTINLHGVLHIQATKV 523 (997)
Q Consensus 449 ~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~~-Vdes~LTGEs~pv~----k~~g~~v~aGt~~~~g~~~~~v~~~ 523 (997)
....+..-+..|.|.+.++.. .+-+|=-.+.|++. |.-..-.-+..|.. -..|..+..|+...-=..++.-+..
T Consensus 163 Div~l~~Gd~IPaD~~il~~~-~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~ 241 (997)
T TIGR01106 163 DLVEVKGGDRIPADLRIISAQ-GCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVM 241 (997)
T ss_pred CEEEECCCCEEeeeEEEEEcc-CcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchh
Confidence 456777888889998888764 24566666667764 32211110111221 2357778888643221122222223
Q ss_pred cCchHHHHHHHHHHHhhc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCccCCCCccHHHHHHHHh
Q 001906 524 GSDAVLSQIISLVETAQM-SKAPIQKFADFVASIFVPIVVTLALFTWLC-WYVAGVLGAYPEQWLPENGTHFVFALMFSI 601 (997)
Q Consensus 524 g~~t~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (997)
|.-. ++.+..+..+. -...++++.+.+..+.+.+.+++.++.++. +.+. ..+..++...+
T Consensus 242 g~i~---~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~v~v 303 (997)
T TIGR01106 242 GRIA---SLASGLENGKTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYTWL---------------EAVIFLIGIIV 303 (997)
T ss_pred hHHH---hhhhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH---------------HHHHHHHHHHh
Confidence 3222 11111111111 123455666666666555555444443332 1111 12344556667
Q ss_pred hhhhhhccccchhhHHHHHHHHH
Q 001906 602 SVVVIACPCALGLATPTAVMVAT 624 (997)
Q Consensus 602 svlv~~~P~al~la~p~~~~~~~ 624 (997)
+....+.|.++.++...+.....
T Consensus 304 ~~iP~~L~~~v~i~l~~~~~~m~ 326 (997)
T TIGR01106 304 ANVPEGLLATVTVCLTLTAKRMA 326 (997)
T ss_pred hcCCccchHHHHHHHHHHHHHHH
Confidence 77888889988888888766543
No 276
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=40.09 E-value=1.1e+02 Score=29.21 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=47.9
Q ss_pred CCeEEEEEEecCCCcHhHHHHHHHHHHCCC-eE-EEEcCCCHHHHHHHHHHcCCceEEecc-ChhhHHHH
Q 001906 791 DDNLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNWRTAHAVAREIGIQDVMADV-MPAGKADA 857 (997)
Q Consensus 791 ~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi-~~-~i~Tgd~~~~a~~ia~~~gi~~~~~~~-~p~~K~~~ 857 (997)
+-.++|+-++...-.+..++.++.|+++|. .+ +++=|-.+..-..-.+++|++.+|..= ++.+..+.
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~ 122 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIF 122 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHH
Confidence 446788888888899999999999999986 34 455444444445668899999888643 34444333
No 277
>PRK11018 hypothetical protein; Provisional
Probab=39.78 E-value=1.5e+02 Score=25.31 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=43.3
Q ss_pred cccccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001906 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (997)
Q Consensus 130 ~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~ 196 (997)
..+.+.|..|+.-.-+..++|++++. .+.+.|..|.. ...++|-..+++.||.+...
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~-~a~~di~~~~~~~G~~v~~~ 65 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCP-QSINNIPLDARNHGYTVLDI 65 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCCEEEEE
Confidence 36788999999999999999987753 23445555533 46789999999999998543
No 278
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=38.90 E-value=1.5e+02 Score=24.10 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=38.3
Q ss_pred cccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001906 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (997)
Q Consensus 132 l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~ 196 (997)
+.+.|+.|+.-.-+..+++ ++.. .+.+.|..|.. ...++|...+++.||.....
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~-~s~~~i~~~~~~~G~~~~~~ 55 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNE-VAKENVSRFAESRGYEVSVE 55 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcCh-hHHHHHHHHHHHcCCEEEEE
Confidence 4567999999888888888 5432 22344444432 46789999999999999543
No 279
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=38.84 E-value=1.1e+02 Score=39.45 Aligned_cols=188 Identities=15% Similarity=0.152 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCeE-----------EEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEE
Q 001906 409 LFGKYLEILAKGKTSDAIKKLVELAPATA-----------LLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGI 477 (997)
Q Consensus 409 ~~~~~le~~~~~k~~~~l~~l~~~~~~~~-----------~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~ 477 (997)
+++.+.|.++ +++.+.++++........ ..+--++=.++....+..-+..|-|..+++. +-+-+|=-
T Consensus 126 ~i~~~qe~~a-~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g-~~l~VDES 203 (903)
T PRK15122 126 LLRFWQEFRS-NKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIES-RDLFISQA 203 (903)
T ss_pred HHHHHHHHHH-HHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEc-CceEEEcc
Confidence 3444555544 477778888765443222 1111111111144677788888888887763 33556656
Q ss_pred EEeccee-eecccc------------CCCCccc-----ccCCCCceecceEEeeeeEEEEEEEecC----------chHH
Q 001906 478 VVWGTSY-VNESMV------------TGEAVPV-----LKEINSPVIGGTINLHGVLHIQATKVGS----------DAVL 529 (997)
Q Consensus 478 vl~G~~~-Vdes~L------------TGEs~pv-----~k~~g~~v~aGt~~~~g~~~~~v~~~g~----------~t~~ 529 (997)
.+.|++. |+-... .++..+. ....|..+..|+...-=..++.-+..|. .|.+
T Consensus 204 ~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~~v~~~~~~t~l 283 (903)
T PRK15122 204 VLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAKSIVGTRAQTAF 283 (903)
T ss_pred ccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHHHhcCCCCCCcH
Confidence 6667765 433321 1222221 2467888888875432222222222111 1222
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhcc
Q 001906 530 SQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACP 609 (997)
Q Consensus 530 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P 609 (997)
.+ .-.++.+.+..++.++++++++++.+...-|.- .+..++..+++....+.|
T Consensus 284 ~~----------~l~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~-----------------~l~~aisl~V~~~Pe~Lp 336 (903)
T PRK15122 284 DR----------GVNSVSWLLIRFMLVMVPVVLLINGFTKGDWLE-----------------ALLFALAVAVGLTPEMLP 336 (903)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHH-----------------HHHHHHHHHHHHccchHH
Confidence 11 112355667778888888877776543221211 234456677777777788
Q ss_pred ccchhhHHHHHHHHHH
Q 001906 610 CALGLATPTAVMVATG 625 (997)
Q Consensus 610 ~al~la~p~~~~~~~~ 625 (997)
.++++++..+.....+
T Consensus 337 ~~vt~~La~g~~~mak 352 (903)
T PRK15122 337 MIVSSNLAKGAIAMAR 352 (903)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877655443
No 280
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=38.12 E-value=1.6e+02 Score=37.16 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCC-----eEEEEEcCCCceeeEEEEecCCCCCCCEEEecCCCcccccEEEEeccee
Q 001906 410 FGKYLEILAKGKTSDAIKKLVELAPA-----TALLVVKDKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY 484 (997)
Q Consensus 410 ~~~~le~~~~~k~~~~l~~l~~~~~~-----~~~v~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~~ 484 (997)
++.+.| +..+++.+.++++...... ....+--++=.++....+..-+.+|-|-..++ |+..-+|=-.+.|++.
T Consensus 71 i~~~qe-~~a~~~~~~L~~~~~~~~~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~-g~~~~VDeS~LTGES~ 148 (755)
T TIGR01647 71 IGFIEE-NKAGNAVEALKQSLAPKARVLRDGKWQEIPASELVPGDVVRLKIGDIVPADCRLFE-GDYIQVDQAALTGESL 148 (755)
T ss_pred HHHHHH-HHHHHHHHHHHhhCCCeEEEEECCEEEEEEhhhCcCCCEEEECCCCEEeceEEEEe-cCceEEEcccccCCcc
Confidence 344444 4444666777776432211 11112111111113456777777788877775 4334455555556654
Q ss_pred -eeccccCCCCcccccCCCCceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHHH
Q 001906 485 -VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ-MSKAPIQKFADFVASIFVPIVV 562 (997)
Q Consensus 485 -Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 562 (997)
|+-. +|+ .-..|..+-.|+...-=..++.-+..|. +.++.+..+... .-...+.+....+..+.+.+++
T Consensus 149 PV~K~--~~~----~v~aGT~v~~G~~~~~V~~tG~~T~~g~---i~~lv~~~~~~~~~lq~~~~~i~~~~~~~~~~~~~ 219 (755)
T TIGR01647 149 PVTKK--TGD----IAYSGSTVKQGEAEAVVTATGMNTFFGK---AAALVQSTETGSGHLQKILSKIGLFLIVLIGVLVL 219 (755)
T ss_pred ceEec--cCC----eeeccCEEEccEEEEEEEEcCCccHHHH---HHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 121 1245666666664332111111111111 111111111111 1111233444455444333333
Q ss_pred HHHHHHHHHH--HHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHH
Q 001906 563 TLALFTWLCW--YVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGV 626 (997)
Q Consensus 563 ~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~ 626 (997)
+..++.++.. .+. ..+..++...++....+.|.++++++..+.....++
T Consensus 220 i~~~~~~~~~~~~~~---------------~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~ 270 (755)
T TIGR01647 220 IELVVLFFGRGESFR---------------EGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKK 270 (755)
T ss_pred HHHHHHHHHcCCCHH---------------HHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhC
Confidence 3333333211 111 124556778888899999999999998887665544
No 281
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=37.88 E-value=1.4e+02 Score=27.55 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=42.8
Q ss_pred CeEEEEEEecCCCcHhHHHHHHHHHHCCC-e-EEEEcCCCHHHHHHHHHHcCCceEEe
Q 001906 792 DNLIGVMGIADPVKREAAVVVEGLLKMGV-R-PVMVTGDNWRTAHAVAREIGIQDVMA 847 (997)
Q Consensus 792 ~~~lG~i~~~d~~~~~~~~~i~~l~~~gi-~-~~i~Tgd~~~~a~~ia~~~gi~~~~~ 847 (997)
-.++|+-...+.-.+.+++.++.+|+.+- . .+++-|.....-...+++.|.+.++.
T Consensus 51 pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 51 ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEEC
Confidence 35777777777778999999999999976 4 46777766555456889999977765
No 282
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=37.71 E-value=6.7e+02 Score=32.97 Aligned_cols=130 Identities=12% Similarity=0.035 Sum_probs=71.6
Q ss_pred hHHHHHHhhcCCCCeeEEEEEee-----ccEEEEEECCCC---cchHHHHHHHHhc-C-c-chhhhc-ccCC-CCCCCCc
Q 001906 60 CSNSVEGALMGLKGVAKASVALL-----QNKADVVFDPDL---VKDEDIKNAIEDA-G-F-EAEILA-ESST-SGPKPQG 126 (997)
Q Consensus 60 C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~---~~~~~i~~~i~~~-G-y-~~~~~~-~~~~-~~~~~~~ 126 (997)
-.+.+++.+++.|+|..+..... .++..+...+.. .+.+++.+.+++. . + ++.... .... .......
T Consensus 578 ~~~~~~~~l~~~~~V~~v~~~~g~~~~~~~~~~v~l~~~~~r~~~~~~i~~~lr~~l~~~pg~~~~~~~~~~~~~~g~~~ 657 (1025)
T PRK10614 578 KLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPLSERSETAQQVIDRLRVKLAKEPGANLFLMAVQDIRVGGRQS 657 (1025)
T ss_pred HHHHHHHHHhcCCCeEEEEEEecCCCCceeEEEEEecchhhccCcHHHHHHHHHHHHhcCCCcEEEecCCcccCcCCCCC
Confidence 44556667777888887765322 234455554321 1334444444432 1 1 111110 0000 0000001
Q ss_pred ceecccccCCccCh---hhHHHHHHhhhcCCCceeEEeecCCC--eEEEEeCCC-----CCCHHHHHHHHHhc
Q 001906 127 TIVGQYTIGGMTCA---ACVNSVEGILRGLPGVKRAVVALATS--LGEVEYDPT-----VISKDDIANAIEDA 189 (997)
Q Consensus 127 ~~~~~l~i~gm~C~---~C~~~ie~~l~~~~GV~~v~v~~~~~--~~~v~~d~~-----~~~~~~i~~~i~~~ 189 (997)
...+.+++.|-+=. .-+.++++.+++.||+.++..+...+ .+.+..|+. .++..++.+.++..
T Consensus 658 ~~~i~i~l~G~d~~~L~~~a~~i~~~L~~~pgv~~v~~~~~~~~~el~i~id~~ka~~~Gls~~~v~~~l~~~ 730 (1025)
T PRK10614 658 NASYQYTLLSDDLAALREWEPKIRKALAALPELADVNSDQQDKGAEMALTYDRDTMARLGIDVQAANSLLNNA 730 (1025)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 11245566665433 34788999999999999999876554 777777764 36788999988865
No 283
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=37.63 E-value=1.1e+02 Score=36.53 Aligned_cols=48 Identities=27% Similarity=0.356 Sum_probs=40.5
Q ss_pred hhhHHHHHHhhhcCCCceeEEeecCCC------------------eEEEEeCCCCCCHHHHHHHHH
Q 001906 140 AACVNSVEGILRGLPGVKRAVVALATS------------------LGEVEYDPTVISKDDIANAIE 187 (997)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~v~~~~~------------------~~~v~~d~~~~~~~~i~~~i~ 187 (997)
++|-|-+|....+++||.++++-++.+ .+.|.|||..++.++|++..=
T Consensus 205 gGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f~ 270 (521)
T PRK14018 205 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYYF 270 (521)
T ss_pred cCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHHH
Confidence 478888999999999999998877554 378999999999999988654
No 284
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.51 E-value=1.5e+02 Score=32.30 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=31.9
Q ss_pred cChhhHHHHHHHHh--hcCCEEEEEcCCcC----CHHHHhcCC--eeEEecCCc--HHHHHhcCEEEec
Q 001906 849 VMPAGKADAVRSFQ--KDGSIVAMVGDGIN----DSPALAAAD--VGMAIGAGT--DIAIEAADYVLMR 907 (997)
Q Consensus 849 ~~p~~K~~~v~~l~--~~g~~v~~vGDg~n----D~~al~~A~--vgia~~~~~--~~~~~~ad~vl~~ 907 (997)
++|..=.++++... -.|++|+.+|.+.. =+.+|...+ |-++-.... ......||+++..
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~A 207 (284)
T PRK14170 139 CTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVA 207 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEe
Confidence 34433334444432 24889999999843 123444444 444443222 2345678998864
No 285
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=37.43 E-value=1.5e+02 Score=39.13 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=74.2
Q ss_pred HHHHHHhhhcCCCceeEEeecC---CCeEEEEeCCCCCCHH----HHHHHHHhcC--Cceee-------eccCCccceee
Q 001906 143 VNSVEGILRGLPGVKRAVVALA---TSLGEVEYDPTVISKD----DIANAIEDAG--FEASF-------VQSSGQDKILL 206 (997)
Q Consensus 143 ~~~ie~~l~~~~GV~~v~v~~~---~~~~~v~~d~~~~~~~----~i~~~i~~~G--y~~~~-------~~~~~~~~~~l 206 (997)
...+|+.+..++|+++++-.-. ...+.++|+++. +.+ ++.+.+.+.. ++... .......-..+
T Consensus 62 t~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g~-d~~~a~~~V~~~i~~~~~~LP~~~~~~~~~~~~~~~~~v~~~ 140 (1049)
T PRK15127 62 TQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGT-DADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVV 140 (1049)
T ss_pred hHHHHHHhcCCCCceEEEEEecCCceEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcccCCCcEEecCCCCceEEE
Confidence 3678999999999999886542 335778887763 443 5555565432 22110 00011111223
Q ss_pred eecC----ccch---h-hhHHHHhhhhcCCCceEEEeecCCCeEEEEecCCC-----CCchhhhhhhcc
Q 001906 207 QVTG----VLCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (997)
Q Consensus 207 ~v~g----m~c~---~-ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~~d~~~-----~~~~~i~~~i~~ 262 (997)
.+.+ +.-. . -.+.++..|.+.+||.++++......+.|..||.+ ++..++...++.
T Consensus 141 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~V~~~l~~ 209 (1049)
T PRK15127 141 GVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIKA 209 (1049)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 3322 1111 1 23468899999999999999877777899999875 677777777763
No 286
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.23 E-value=2.2e+02 Score=23.47 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=41.4
Q ss_pred EEEeCCCCCCHHHHHHHHHhcCCceeeeccC----CccceeeeecCccchhhhHHHHhhhhcCCCceEEEe
Q 001906 169 EVEYDPTVISKDDIANAIEDAGFEASFVQSS----GQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRF 235 (997)
Q Consensus 169 ~v~~d~~~~~~~~i~~~i~~~Gy~~~~~~~~----~~~~~~l~v~gm~c~~ca~~ie~~l~~~~GV~~~~v 235 (997)
.+......-...+|.+.|.+.|-.+...... ......+.+.--.-...-..+.+.|++++||.++.+
T Consensus 4 ~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 4 SLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 3444333345788999999998887654321 112234444331122366788899999999998764
No 287
>COG4996 Predicted phosphatase [General function prediction only]
Probab=37.22 E-value=1.4e+02 Score=28.08 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=54.3
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc--Chhh-HH----HHHHHHhhc------CCEEE
Q 001906 803 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV--MPAG-KA----DAVRSFQKD------GSIVA 869 (997)
Q Consensus 803 ~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~--~p~~-K~----~~v~~l~~~------g~~v~ 869 (997)
.++++++++++.+|+.|.-+..+|=..+..|....+.+++..+|.=+ .|.. |. ++++.++.+ ...++
T Consensus 41 ~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Iv 120 (164)
T COG4996 41 HLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIV 120 (164)
T ss_pred EEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEE
Confidence 47899999999999999999999999999999999999999876533 3332 33 344444432 34567
Q ss_pred EEcCC
Q 001906 870 MVGDG 874 (997)
Q Consensus 870 ~vGDg 874 (997)
++-|-
T Consensus 121 y~DDR 125 (164)
T COG4996 121 YLDDR 125 (164)
T ss_pred EEecc
Confidence 77665
No 288
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.08 E-value=1.6e+02 Score=32.12 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=34.4
Q ss_pred ccChhhHHHHHHHHh--hcCCEEEEEcC-CcCCHH---HHhcCCeeEEec-CCc---HHHHHhcCEEEec
Q 001906 848 DVMPAGKADAVRSFQ--KDGSIVAMVGD-GINDSP---ALAAADVGMAIG-AGT---DIAIEAADYVLMR 907 (997)
Q Consensus 848 ~~~p~~K~~~v~~l~--~~g~~v~~vGD-g~nD~~---al~~A~vgia~~-~~~---~~~~~~ad~vl~~ 907 (997)
.++|..=.++++... -.|+.++++|- |.-=.| +|..++..+.+- +.+ ......||+++..
T Consensus 139 PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 139 PCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVA 208 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEe
Confidence 344444444444443 24899999999 544444 455666555542 222 3345679999864
No 289
>PRK09577 multidrug efflux protein; Reviewed
Probab=36.97 E-value=1.9e+02 Score=37.99 Aligned_cols=119 Identities=13% Similarity=0.222 Sum_probs=71.5
Q ss_pred HHHHHHhhhcCCCceeEEeecCCC--eEEEEeCCCCCCHH----HHHHHHHhc--CCcee-------eeccCCccceeee
Q 001906 143 VNSVEGILRGLPGVKRAVVALATS--LGEVEYDPTVISKD----DIANAIEDA--GFEAS-------FVQSSGQDKILLQ 207 (997)
Q Consensus 143 ~~~ie~~l~~~~GV~~v~v~~~~~--~~~v~~d~~~~~~~----~i~~~i~~~--Gy~~~-------~~~~~~~~~~~l~ 207 (997)
...+|+.|..++|+++++-.-..+ .+.++|+.+. +.+ ++.+.+++. .++.. ...........+.
T Consensus 62 t~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~~~~~~~~~~~~~~~~~~~~~ 140 (1032)
T PRK09577 62 TALIEREMNGAPGLLYTSATSSAGQASLSLTFKQGV-NADLAAVEVQNRLKTVEARLPEPVRRDGIQVEKAADNIQLIVS 140 (1032)
T ss_pred HHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCcccccCCceEeccCCCceEEEE
Confidence 467889999999999876554444 5566777653 333 455555533 12211 1111111122334
Q ss_pred ecCc----cch---h-hhHHHHhhhhcCCCceEEEeecCCCeEEEEecCCC-----CCchhhhhhhcc
Q 001906 208 VTGV----LCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (997)
Q Consensus 208 v~gm----~c~---~-ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~~d~~~-----~~~~~i~~~i~~ 262 (997)
+.+- .-. . -...++..|.+.+||.++.+......+.|..||.+ ++..++.+.|+.
T Consensus 141 l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~ 208 (1032)
T PRK09577 141 LTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRA 208 (1032)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 4331 111 1 24578999999999999999886666778778764 667777777754
No 290
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=36.80 E-value=57 Score=27.80 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=30.9
Q ss_pred HHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCcee
Q 001906 143 VNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEAS 194 (997)
Q Consensus 143 ~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~ 194 (997)
+..++=.|.+.++|-.+-+|--.+...|.||+...+.+++.+.+++.++.+.
T Consensus 13 A~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi 64 (88)
T PF11491_consen 13 AMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVI 64 (88)
T ss_dssp THHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS
T ss_pred HHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhhe
Confidence 4556677888899999999999999999999999999999999999988763
No 291
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=36.68 E-value=2.2e+02 Score=30.24 Aligned_cols=123 Identities=13% Similarity=0.161 Sum_probs=70.9
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHH----cCCceE--Eec-cChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHH-
Q 001906 810 VVVEGLLKMGVRPVMVTGDNWRTAHAVARE----IGIQDV--MAD-VMPAGKADAVRSFQKDGSIVAMVGDGINDSPAL- 881 (997)
Q Consensus 810 ~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~----~gi~~~--~~~-~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al- 881 (997)
+.++...+.|.++.++ |..+.++...++. .|+.-+ +.. ..|++..++++.+...+..+++||=|.-=-+.+
T Consensus 96 ~ll~~~~~~~~~v~ll-G~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~PkQE~~~ 174 (243)
T PRK03692 96 ALMARAGKEGTPVFLV-GGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGSPKQEIFM 174 (243)
T ss_pred HHHHHHHhcCCeEEEE-CCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHH
Confidence 4555666678888888 5555544444433 354311 111 236677779999999999999999995532222
Q ss_pred ------hcCCeeEEecCCcHH---HHHhcCEEEecCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 001906 882 ------AAADVGMAIGAGTDI---AIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFA 934 (997)
Q Consensus 882 ------~~A~vgia~~~~~~~---~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~ 934 (997)
-...+.+++|..-|. ....|--.+.+-++..+..++.+=|+..+.+. +..|.
T Consensus 175 ~~~~~~~~~~v~~gvGg~fD~~aG~~~RAP~w~~~~gLEWlyRl~~EP~R~~R~~~-~~~F~ 235 (243)
T PRK03692 175 RDCRLVYPDALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWLYRLLSQPSRIRRQLR-LLRYL 235 (243)
T ss_pred HHHHHhCCCCEEEEeCeEEEEecCCcCcCcHHHHHhChHHHHHhHhCcHHHHHHHH-HHHHH
Confidence 134455666532111 11223333445678889999988887544433 44443
No 292
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=36.68 E-value=46 Score=33.64 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=44.5
Q ss_pred CCCceEEEEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccE-------------------EEEEECCCCcchHHHHH
Q 001906 42 GDGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNK-------------------ADVVFDPDLVKDEDIKN 102 (997)
Q Consensus 42 ~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~-------------------~~v~~~~~~~~~~~i~~ 102 (997)
..+|.++.| -++|=|.+|....+++||.++.+-+..+. +.|.||+..++.+++.+
T Consensus 5 ~~~~~~a~~------agGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~ 78 (186)
T PRK13014 5 ADGMETATF------AGGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQ 78 (186)
T ss_pred CCCccEEEE------ecCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHH
Confidence 445555544 26788999999999999999998765553 77888988888888877
Q ss_pred HHH
Q 001906 103 AIE 105 (997)
Q Consensus 103 ~i~ 105 (997)
..-
T Consensus 79 ~Ff 81 (186)
T PRK13014 79 IFF 81 (186)
T ss_pred HHH
Confidence 654
No 293
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.11 E-value=3.7e+02 Score=28.52 Aligned_cols=110 Identities=17% Similarity=0.273 Sum_probs=61.8
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCC---cHhHHHHHHHHHHCCCeEEEEcCC--CHHHHHHHHHHcCCceE
Q 001906 771 VESFVVELEESARTGILVAYDDNLIGVMGIADPV---KREAAVVVEGLLKMGVRPVMVTGD--NWRTAHAVAREIGIQDV 845 (997)
Q Consensus 771 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~---~~~~~~~i~~l~~~gi~~~i~Tgd--~~~~a~~ia~~~gi~~~ 845 (997)
.+++.+.+.+.|...+. +.|.+ .++..+.++.+++.|++++++-.. +......+++...-.-+
T Consensus 90 ~~~~i~~~~~~Gadgvi------------i~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~ 157 (244)
T PRK13125 90 LDNFLNMARDVGADGVL------------FPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIY 157 (244)
T ss_pred HHHHHHHHHHcCCCEEE------------ECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 34456666666654432 23322 367889999999999997665433 35566777776543222
Q ss_pred Ee------ccChhhHHHHHHHHhhcC-CEEEEEcCCc---CCHHHHhcCCe-eEEecC
Q 001906 846 MA------DVMPAGKADAVRSFQKDG-SIVAMVGDGI---NDSPALAAADV-GMAIGA 892 (997)
Q Consensus 846 ~~------~~~p~~K~~~v~~l~~~g-~~v~~vGDg~---nD~~al~~A~v-gia~~~ 892 (997)
.+ .-.+.+-.+.++.+++.. +....+|-|+ +|+..+..++. |+-+|+
T Consensus 158 msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 158 YGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred EEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 21 112233334555555433 2356789988 35555544443 455553
No 294
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=36.07 E-value=9.4e+02 Score=29.88 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=9.0
Q ss_pred hhccccCCCCCccccc
Q 001906 977 SLLLRRYKKPRLTTIL 992 (997)
Q Consensus 977 s~~l~~~~~~~~~~~~ 992 (997)
+||-.+|+|-....++
T Consensus 632 ~~~~~~~~~~~~~~~~ 647 (679)
T PRK01122 632 ALKGVKYRPLSAAALL 647 (679)
T ss_pred HhcCccccccCHHHHH
Confidence 4566677775544443
No 295
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=35.44 E-value=1.8e+02 Score=38.30 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=73.3
Q ss_pred HHHHHHhhhcCCCceeEEeecC---CCeEEEEeCCCCCCH----HHHHHHHHhc--CCcee-------eeccCCccceee
Q 001906 143 VNSVEGILRGLPGVKRAVVALA---TSLGEVEYDPTVISK----DDIANAIEDA--GFEAS-------FVQSSGQDKILL 206 (997)
Q Consensus 143 ~~~ie~~l~~~~GV~~v~v~~~---~~~~~v~~d~~~~~~----~~i~~~i~~~--Gy~~~-------~~~~~~~~~~~l 206 (997)
...+|+.++.++||++++.... ...+.++++++. +. .++.+.+.+. .++.. ........-..+
T Consensus 62 t~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~~-d~~~a~~~v~~~l~~~~~~LP~~~~~~~~~~~~~~~~~~~~i 140 (1044)
T TIGR00915 62 TQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQGT-DPDIAQVQVQNKLQLATPLLPQEVQRQGVRVEKASSNFLMVI 140 (1044)
T ss_pred HHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcccCCCcEEeCCCCCceEEE
Confidence 4567888999999998885432 346667776653 32 3455555543 22211 111111112233
Q ss_pred eecCc----cch---h-hhHHHHhhhhcCCCceEEEeecCCCeEEEEecCCC-----CCchhhhhhhcc
Q 001906 207 QVTGV----LCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (997)
Q Consensus 207 ~v~gm----~c~---~-ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~~d~~~-----~~~~~i~~~i~~ 262 (997)
.+.+- +-. . -.+.++..|.+.+||.++++......+.|..||.+ ++.+++.+.|+.
T Consensus 141 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~dV~~~i~~ 209 (1044)
T TIGR00915 141 GLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPADVISAIQA 209 (1044)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 33331 111 1 23568999999999999999888777899999875 677888877765
No 296
>PF15584 Imm44: Immunity protein 44
Probab=35.09 E-value=18 Score=31.40 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=15.9
Q ss_pred CCCEEEecCCCcccccEEE
Q 001906 460 SGDTLKVLPGTKLPADGIV 478 (997)
Q Consensus 460 ~GDii~v~~G~~iPaD~~v 478 (997)
+.+-.+|+.|++|||||+=
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 4566789999999999985
No 297
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.83 E-value=1.9e+02 Score=25.32 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=37.9
Q ss_pred HHHHhhhcCCCceeEEe-----ecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001906 145 SVEGILRGLPGVKRAVV-----ALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (997)
Q Consensus 145 ~ie~~l~~~~GV~~v~v-----~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~ 196 (997)
.+-+.|.+++||..+.+ +..+..+.++-....++.++|.+.|++.|-.++-.
T Consensus 23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSi 79 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSI 79 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence 34566777888776654 44566666666666689999999999999877643
No 298
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=34.37 E-value=2.1e+02 Score=29.25 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHCCCeEEEEc-------------CCCHHHHHHHHHHcCCceEEeccCh---h---hHHHHHHHHhhcCCE
Q 001906 807 EAAVVVEGLLKMGVRPVMVT-------------GDNWRTAHAVAREIGIQDVMADVMP---A---GKADAVRSFQKDGSI 867 (997)
Q Consensus 807 ~~~~~i~~l~~~gi~~~i~T-------------gd~~~~a~~ia~~~gi~~~~~~~~p---~---~K~~~v~~l~~~g~~ 867 (997)
|..-++..++++|.++..++ +.+...++.+|+.+|++.....+.+ + +-.+.++.++++|..
T Consensus 11 DS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~ 90 (194)
T cd01994 11 DSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVD 90 (194)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCC
Confidence 34445555555666544332 1256788889999999866555433 1 112344444545666
Q ss_pred EEEEcCCcCCH
Q 001906 868 VAMVGDGINDS 878 (997)
Q Consensus 868 v~~vGDg~nD~ 878 (997)
.+..||-.-|.
T Consensus 91 ~vv~G~i~sd~ 101 (194)
T cd01994 91 AVVFGAILSEY 101 (194)
T ss_pred EEEECccccHH
Confidence 77777765553
No 299
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=34.25 E-value=71 Score=28.21 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=39.8
Q ss_pred HHHHHhhcCCCCeeEEEE-----EeeccEEEEEECCCCcchHHHHHHHHhcCcchhhh
Q 001906 62 NSVEGALMGLKGVAKASV-----ALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (997)
Q Consensus 62 ~~ie~~l~~~~gv~~~~v-----~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (997)
--+-++|.+++||..+.+ |..+....+.......+.+++.+++++.|-.++.+
T Consensus 20 ~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSI 77 (95)
T PF02680_consen 20 VELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSI 77 (95)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEee
Confidence 345677999999988875 45677777777777789999999999999877544
No 300
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=34.20 E-value=2.4e+02 Score=37.12 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=77.2
Q ss_pred cccCCccChh----hHHHHHHhhhcCCCceeEEeecCCC--eEEEEeCCCCCCH----HHHHHHHHhc------CC--ce
Q 001906 132 YTIGGMTCAA----CVNSVEGILRGLPGVKRAVVALATS--LGEVEYDPTVISK----DDIANAIEDA------GF--EA 193 (997)
Q Consensus 132 l~i~gm~C~~----C~~~ie~~l~~~~GV~~v~v~~~~~--~~~v~~d~~~~~~----~~i~~~i~~~------Gy--~~ 193 (997)
..-+|.+-.. -...+|+.++.++||++++-.-..+ .+.++|+++. +. .++.+.+.+. |- ..
T Consensus 58 t~~pGas~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~-d~~~a~~ev~~~i~~~~~~LP~~~~~~p 136 (1040)
T PRK10503 58 TLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTL-PLDVAEQEVQAAINAATNLLPSDLPNPP 136 (1040)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 3444554433 2467899999999999988755555 4566777653 33 3455555532 11 11
Q ss_pred eee--ccCCccceeeeecCc--cch---h-hhHHHHhhhhcCCCceEEEeecC-CCeEEEEecCCC-----CCchhhhhh
Q 001906 194 SFV--QSSGQDKILLQVTGV--LCE---L-DAHFLEGILSNFKGVRQFRFDKI-SGELEVLFDPEA-----LSSRSLVDG 259 (997)
Q Consensus 194 ~~~--~~~~~~~~~l~v~gm--~c~---~-ca~~ie~~l~~~~GV~~~~vn~~-~~~~~V~~d~~~-----~~~~~i~~~ 259 (997)
... .+....-..+.+.+- .-. . -.+.++..|.++|||.++.+... ...+.|..||.+ +++.++...
T Consensus 137 ~~~~~~~~~~pv~~~~l~~~~~~~~~L~~~~~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v~~a 216 (1040)
T PRK10503 137 VYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTA 216 (1040)
T ss_pred EEEEeCCCCCceEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHHHHH
Confidence 111 111111233444331 111 1 12578999999999999988755 467899999874 666777776
Q ss_pred hcc
Q 001906 260 IAG 262 (997)
Q Consensus 260 i~~ 262 (997)
|..
T Consensus 217 i~~ 219 (1040)
T PRK10503 217 ITG 219 (1040)
T ss_pred HHH
Confidence 643
No 301
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=33.92 E-value=6.7e+02 Score=27.55 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=70.7
Q ss_pred EEEEEEecCCCcHhHHHHHHHHHHCCCeEE--------EEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcC
Q 001906 794 LIGVMGIADPVKREAAVVVEGLLKMGVRPV--------MVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 865 (997)
Q Consensus 794 ~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~--------i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g 865 (997)
-++++.=.-...++..+.++.|++..-.+. -.|-+....++.+|++...--+.+.-....=.++.+..++.+
T Consensus 157 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~ 236 (298)
T PRK01045 157 KLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAG 236 (298)
T ss_pred cEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHC
Confidence 366666666677888888999988753333 368888999999999888777777655555556677677777
Q ss_pred CEEEEEcCC-cCCHHHHhcC-CeeEEecCCc
Q 001906 866 SIVAMVGDG-INDSPALAAA-DVGMAIGAGT 894 (997)
Q Consensus 866 ~~v~~vGDg-~nD~~al~~A-~vgia~~~~~ 894 (997)
..+.+|.+- .-|...|+.. .|||.-|.++
T Consensus 237 ~~t~~Ie~~~el~~~~l~~~~~VGitaGAST 267 (298)
T PRK01045 237 APAYLIDDASEIDPEWFKGVKTVGVTAGASA 267 (298)
T ss_pred CCEEEECChHHCcHHHhcCCCEEEEEecCCC
Confidence 777777664 2244566644 4899988543
No 302
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=33.50 E-value=75 Score=31.23 Aligned_cols=49 Identities=37% Similarity=0.532 Sum_probs=40.4
Q ss_pred hhhHHHHHHhhhcCCCceeEEeecCC-------------------CeEEEEeCCCCCCHHHHHHHHHh
Q 001906 140 AACVNSVEGILRGLPGVKRAVVALAT-------------------SLGEVEYDPTVISKDDIANAIED 188 (997)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~v~~~~-------------------~~~~v~~d~~~~~~~~i~~~i~~ 188 (997)
.+|-+.+|.+..+++||...+|-++. +-+.|+|||..++.++|.+..=+
T Consensus 31 ~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw~ 98 (191)
T KOG1635|consen 31 AGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFWS 98 (191)
T ss_pred ccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHHH
Confidence 47899999999999999988887744 35689999999999999886543
No 303
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=33.24 E-value=2.1e+02 Score=24.83 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHh-cCCCeEEEEEc
Q 001906 419 KGKTSDAIKKLVE-LAPATALLVVK 442 (997)
Q Consensus 419 ~~k~~~~l~~l~~-~~~~~~~v~~~ 442 (997)
++|.++..+++.+ +.|.. .|+..
T Consensus 24 qkK~~k~~~~m~~~L~~Gd-~VvT~ 47 (84)
T TIGR00739 24 QRKRRKAHKKLIESLKKGD-KVLTI 47 (84)
T ss_pred HHHHHHHHHHHHHhCCCCC-EEEEC
Confidence 3344444444443 44433 34433
No 304
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.89 E-value=2.7e+02 Score=30.23 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=34.4
Q ss_pred ccChhhHHHHHHHHh--hcCCEEEEEcCCcC----CHHHHhcCCeeEEec--CCc--HHHHHhcCEEEec
Q 001906 848 DVMPAGKADAVRSFQ--KDGSIVAMVGDGIN----DSPALAAADVGMAIG--AGT--DIAIEAADYVLMR 907 (997)
Q Consensus 848 ~~~p~~K~~~v~~l~--~~g~~v~~vGDg~n----D~~al~~A~vgia~~--~~~--~~~~~~ad~vl~~ 907 (997)
.++|..=.++++.+. -+|++|+.+|.+.. =+.+|.+.+..+.+. ... ......||+++..
T Consensus 139 PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsA 208 (278)
T PRK14172 139 PCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVA 208 (278)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEc
Confidence 344544445555543 25899999999844 233555555444443 222 2334679998864
No 305
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=32.31 E-value=1.1e+03 Score=29.31 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=69.1
Q ss_pred EEEEEecCCCcHhHHHHHHHHHHCCCeE------EEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcCCEE
Q 001906 795 IGVMGIADPVKREAAVVVEGLLKMGVRP------VMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIV 868 (997)
Q Consensus 795 lG~i~~~d~~~~~~~~~i~~l~~~gi~~------~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v 868 (997)
++++.=.....++..+.++.|++..-.+ .-.|-+....++.+|+++..--+.+.-....=.++.+..++.|..+
T Consensus 156 ~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~ 235 (647)
T PRK00087 156 ICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICKSNCTNT 235 (647)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCE
Confidence 5666656666688888888898765433 3468888888999999888776777665555556677677777777
Q ss_pred EEEcCCc-CCHHHHhcCC-eeEEecCCc
Q 001906 869 AMVGDGI-NDSPALAAAD-VGMAIGAGT 894 (997)
Q Consensus 869 ~~vGDg~-nD~~al~~A~-vgia~~~~~ 894 (997)
.+|-+-. =|...|+.+. |||.-|.++
T Consensus 236 ~~ie~~~el~~~~~~~~~~vgitagaSt 263 (647)
T PRK00087 236 IHIENAGELPEEWFKGVKIIGVTAGAST 263 (647)
T ss_pred EEECChHHCCHHHhCCCCEEEEEeccCC
Confidence 7776541 1345676554 888888544
No 306
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.02 E-value=2.4e+02 Score=30.72 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=33.7
Q ss_pred cChhhHHHHHHHHh--hcCCEEEEEcCCcCC----HHHHhc------CCeeEEecCCc--HHHHHhcCEEEec
Q 001906 849 VMPAGKADAVRSFQ--KDGSIVAMVGDGIND----SPALAA------ADVGMAIGAGT--DIAIEAADYVLMR 907 (997)
Q Consensus 849 ~~p~~K~~~v~~l~--~~g~~v~~vGDg~nD----~~al~~------A~vgia~~~~~--~~~~~~ad~vl~~ 907 (997)
++|..=.++++... -.|+.++.+|.+..= +.+|.. |.|-++..... ......||+++..
T Consensus 139 cTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~A 211 (286)
T PRK14184 139 CTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVA 211 (286)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEe
Confidence 44444444555443 248899999998431 224433 55666654332 2355678998864
No 307
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=31.82 E-value=5.8e+02 Score=33.03 Aligned_cols=208 Identities=15% Similarity=0.100 Sum_probs=116.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEE----EEEcC-CCceeeEEEEecCCCCCCCEEEecCCCcc
Q 001906 398 FETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATAL----LVVKD-KGKCIEEREIDALLIQSGDTLKVLPGTKL 472 (997)
Q Consensus 398 ~~~~~~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~----v~~~~-~g~~~~~~~i~~~~l~~GDii~v~~G~~i 472 (997)
+....++++..++|.+.|.+ ..++.++++++........+ +...- +=.++....+...|.+|-|..+++..+ .
T Consensus 107 ~~I~~~i~~n~~~g~~qe~~-a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~-l 184 (917)
T COG0474 107 IVILLVVVINALLGFVQEYR-AEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSD-L 184 (917)
T ss_pred eeehHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecC-c
Confidence 33455566666677554444 45788888887655432221 21111 100113467889999999999999887 5
Q ss_pred cccEEEEeccee-eecc--ccCCCCcccc---c---CCCCceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhhccC
Q 001906 473 PADGIVVWGTSY-VNES--MVTGEAVPVL---K---EINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSK 543 (997)
Q Consensus 473 PaD~~vl~G~~~-Vdes--~LTGEs~pv~---k---~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~ 543 (997)
-+|=-.+.|++. |+-. ..+.|..|+. + ..|..|..|+-..-=..++.-+..|+.+..-.-.+ .....-.
T Consensus 185 ~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~--~~~t~l~ 262 (917)
T COG0474 185 EVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKK--EVKTPLQ 262 (917)
T ss_pred eEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhcccc--ccCCcHH
Confidence 666666678765 2221 1222444443 3 46888888884433333333333343333222211 0111111
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHH
Q 001906 544 APIQKFADFVASIFVPIVVTLALFTWLC----WYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTA 619 (997)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~ 619 (997)
..+.+....+..+.+...++..++.+.. |.- .+..++..+++++..+.|..+.++..++
T Consensus 263 ~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~l~va~IPegLp~~vti~la~g 325 (917)
T COG0474 263 RKLNKLGKFLLVLALVLGALVFVVGLFRGGNGLLE-----------------SFLTALALAVAAVPEGLPAVVTIALALG 325 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH-----------------HHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 2234445555554444444444444332 221 3567888899999999999999999998
Q ss_pred HHHHHHH
Q 001906 620 VMVATGV 626 (997)
Q Consensus 620 ~~~~~~~ 626 (997)
...-.++
T Consensus 326 ~~~mak~ 332 (917)
T COG0474 326 AQRMAKD 332 (917)
T ss_pred HHHHHhc
Confidence 8775554
No 308
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=31.81 E-value=1.1e+02 Score=29.92 Aligned_cols=49 Identities=24% Similarity=0.409 Sum_probs=38.9
Q ss_pred hhhHHHHHHhhcCCCCeeEEEEEeecc-------------------EEEEEECCCCcchHHHHHHHHh
Q 001906 58 AACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNAIED 106 (997)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~ 106 (997)
++|=|.+|..+.+++||.++.+-+..+ .+.|.||+..++.+++.+..-+
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~ 74 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFR 74 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHH
Confidence 579999999999999999999976655 4567888888888877776543
No 309
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.38 E-value=2.2e+02 Score=31.00 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=32.9
Q ss_pred cChhhHHHHHHHHh--hcCCEEEEEcCCcC----CHHHHhcCCeeEEe--cCCc--HHHHHhcCEEEecC
Q 001906 849 VMPAGKADAVRSFQ--KDGSIVAMVGDGIN----DSPALAAADVGMAI--GAGT--DIAIEAADYVLMRN 908 (997)
Q Consensus 849 ~~p~~K~~~v~~l~--~~g~~v~~vGDg~n----D~~al~~A~vgia~--~~~~--~~~~~~ad~vl~~~ 908 (997)
++|..=.++++... -.|+.|+.+|.|.. =+.+|...+..+.+ .... ......||+++..-
T Consensus 140 cTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~av 209 (285)
T PRK14189 140 CTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAV 209 (285)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcC
Confidence 34433333444432 24889999999855 12344555544433 2222 23456899998743
No 310
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=31.36 E-value=99 Score=30.11 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=38.0
Q ss_pred hhhHHHHHHhhcCCCCeeEEEEEeecc-------------------EEEEEECCCCcchHHHHHHHH
Q 001906 58 AACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNAIE 105 (997)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~ 105 (997)
++|=|.+|....+++||.++.+-+..+ .+.|.||+..++.+++.+..-
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~ 73 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFW 73 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHH
Confidence 579999999999999999999854433 456788888888888777553
No 311
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=31.27 E-value=25 Score=35.47 Aligned_cols=13 Identities=62% Similarity=0.830 Sum_probs=12.2
Q ss_pred EEecCCCccccCc
Q 001906 649 VIFDKTGTLTQGR 661 (997)
Q Consensus 649 i~fDKTGTLT~~~ 661 (997)
+|||.+||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6999999999998
No 312
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=31.12 E-value=5.3e+02 Score=31.06 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=55.7
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCC-HHHHHHHHHHcCCc-eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhc
Q 001906 806 REAAVVVEGLLKMGVRPVMVTGDN-WRTAHAVAREIGIQ-DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAA 883 (997)
Q Consensus 806 ~~~~~~i~~l~~~gi~~~i~Tgd~-~~~a~~ia~~~gi~-~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~ 883 (997)
-|+.+++...++.+-++.+++=.+ ...+..+++-++++ ..+.-.++++-...++.++++|.. +.|||+.- +...++
T Consensus 94 ~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~G~~-~vvG~~~~-~~~A~~ 171 (538)
T PRK15424 94 FDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKANGIE-AVVGAGLI-TDLAEE 171 (538)
T ss_pred hHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCC-EEEcCchH-HHHHHH
Confidence 457777888888777887776554 45678888888886 445555777888899999999975 55798754 333344
Q ss_pred CC
Q 001906 884 AD 885 (997)
Q Consensus 884 A~ 885 (997)
++
T Consensus 172 ~g 173 (538)
T PRK15424 172 AG 173 (538)
T ss_pred hC
Confidence 43
No 313
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=31.08 E-value=5.3e+02 Score=25.47 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=55.6
Q ss_pred hHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHH-HHHHHHHHc--CCceEEe
Q 001906 771 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWR-TAHAVAREI--GIQDVMA 847 (997)
Q Consensus 771 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~-~a~~ia~~~--gi~~~~~ 847 (997)
++...+.++..|.-++..+|...+. . ...++.|+..|++++...|+... .+.-..+.+ +-.+.+.
T Consensus 43 ~~~i~~~ls~~G~i~~~R~Y~~a~a---------~---~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~v 110 (160)
T TIGR00288 43 LDEIREILSEYGDIKIGKVLLNQYA---------S---DKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVA 110 (160)
T ss_pred HHHHHHHHHhcCCeEEEEEEechhc---------c---HHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEE
Confidence 4555667777776666555532211 1 24578899999999988886332 233333333 2223444
Q ss_pred ccC-hhhHHHHHHHHhhcCCEEEEEcC
Q 001906 848 DVM-PAGKADAVRSFQKDGSIVAMVGD 873 (997)
Q Consensus 848 ~~~-p~~K~~~v~~l~~~g~~v~~vGD 873 (997)
=++ ..+=..+++.+++.|.+|..+|-
T Consensus 111 LvSgD~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 111 LVTRDADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred EEeccHhHHHHHHHHHHCCCEEEEEeC
Confidence 443 34556788889989998887774
No 314
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=30.81 E-value=1.4e+02 Score=26.85 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.0
Q ss_pred EEecCCCCCCCEEEecCCCcc
Q 001906 452 EIDALLIQSGDTLKVLPGTKL 472 (997)
Q Consensus 452 ~i~~~~l~~GDii~v~~G~~i 472 (997)
--|+.++++||+|.|.-|...
T Consensus 43 aKpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 43 AKPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred cccccccCCCCEEEEEeCCcE
Confidence 368999999999999998754
No 315
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.26 E-value=1.9e+02 Score=24.76 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=33.5
Q ss_pred EEEecCCCcHhHHHHHHHHHHCCCeEEE-EcCCCHHHHHHHHHHcCCc
Q 001906 797 VMGIADPVKREAAVVVEGLLKMGVRPVM-VTGDNWRTAHAVAREIGIQ 843 (997)
Q Consensus 797 ~i~~~d~~~~~~~~~i~~l~~~gi~~~i-~Tgd~~~~a~~ia~~~gi~ 843 (997)
++.+.+...+.+.+..+.||+.|+++.+ ..+.+...-...|++.|+.
T Consensus 6 ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 6 VIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 3445567788899999999999999877 4555555555666666653
No 316
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.23 E-value=2e+02 Score=23.69 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=43.4
Q ss_pred EEEECCCCcchHHHHHHHHhcCcchhhhcccCCCCCCCCcceecccccCCccChhhHHHHHHhhhcCCCceeEEe
Q 001906 87 DVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV 161 (997)
Q Consensus 87 ~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v 161 (997)
.+...+.+-...++.+.+.+.|-.+..+..... ........+.++--.=......+-+.|++++||.++.+
T Consensus 4 ~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~----~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 4 SLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP----IHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC----CCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 344433344578899999999887765543211 11223334444332222366888899999999999874
No 317
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=30.12 E-value=2.2e+02 Score=36.61 Aligned_cols=193 Identities=18% Similarity=0.162 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEE----------EEEc-CCCceeeEEEEecCCCCCCCEEEecCCCc
Q 001906 403 MLITFVLFGKYLEILAKGKTSDAIKKLVELAPATAL----------LVVK-DKGKCIEEREIDALLIQSGDTLKVLPGTK 471 (997)
Q Consensus 403 ~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~----------v~~~-~~g~~~~~~~i~~~~l~~GDii~v~~G~~ 471 (997)
++++..+++.+.|.+++ |+.+.++++....+...+ .... ++=.++....+..-+.+|-|...++ |+-
T Consensus 97 iv~~~~~i~~~~e~~a~-ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~-g~~ 174 (867)
T TIGR01524 97 MVLASGLLGFIQESRAE-RAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVIS-ARD 174 (867)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEe-cCc
Confidence 34455567888888886 788889888766554433 1111 1111114467778888888888876 444
Q ss_pred ccccEEEEeccee-eeccccC--CCCccc-----ccCCCCceecceEEeeeeEEEEEEEecC----------chHHHHHH
Q 001906 472 LPADGIVVWGTSY-VNESMVT--GEAVPV-----LKEINSPVIGGTINLHGVLHIQATKVGS----------DAVLSQII 533 (997)
Q Consensus 472 iPaD~~vl~G~~~-Vdes~LT--GEs~pv-----~k~~g~~v~aGt~~~~g~~~~~v~~~g~----------~t~~~~i~ 533 (997)
+-+|=-.+.|++. |+-..-+ .+..|. ....|..+..|....-=..++.-+..|. .|.+.+..
T Consensus 175 l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~t~lq~~~ 254 (867)
T TIGR01524 175 LFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATERRGQTAFDKGV 254 (867)
T ss_pred eEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhCCCCCCcHHHHH
Confidence 5667677778765 3322111 011111 1357888888875432222222222221 12221111
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccch
Q 001906 534 SLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALG 613 (997)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~ 613 (997)
..+.+....+...+.++++++..+...-|.- .+..++..+++....+.|.+++
T Consensus 255 ----------~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------~~~~al~l~v~~iP~~Lp~~vt 307 (867)
T TIGR01524 255 ----------KSVSKLLIRFMLVMVPVVLMINGLMKGDWLE-----------------AFLFALAVAVGLTPEMLPMIVS 307 (867)
T ss_pred ----------HHHHHHHHHHHHHHHHHheehHHHhcCCHHH-----------------HHHHHHHHHHHhCcchHHHHHH
Confidence 1122333334444444444333221111211 2445566777888888888888
Q ss_pred hhHHHHHHHHH
Q 001906 614 LATPTAVMVAT 624 (997)
Q Consensus 614 la~p~~~~~~~ 624 (997)
+++..+.....
T Consensus 308 ~~la~g~~~ma 318 (867)
T TIGR01524 308 SNLAKGAINMS 318 (867)
T ss_pred HHHHHHHHHHH
Confidence 88888775433
No 318
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.01 E-value=1.9e+02 Score=31.78 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=32.8
Q ss_pred cChhhHHHHHHHHh--hcCCEEEEEcCC-cCCHH---HHhcCCeeEEecC----CcHHHHHhcCEEEec
Q 001906 849 VMPAGKADAVRSFQ--KDGSIVAMVGDG-INDSP---ALAAADVGMAIGA----GTDIAIEAADYVLMR 907 (997)
Q Consensus 849 ~~p~~K~~~v~~l~--~~g~~v~~vGDg-~nD~~---al~~A~vgia~~~----~~~~~~~~ad~vl~~ 907 (997)
++|..=.++++... -.|++|+++|-+ .-=.| .|..++..+.+-+ ..+.+...||+++..
T Consensus 140 cTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 140 CTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAA 208 (296)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEe
Confidence 34443334444432 258999999954 32222 4456666665542 234455678988864
No 319
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.93 E-value=2.2e+02 Score=31.02 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=33.0
Q ss_pred cChhhHHHHHHHHhh--cCCEEEEEcCCcC----CHHHHhc--CCeeEEecCCcH--HHHHhcCEEEec
Q 001906 849 VMPAGKADAVRSFQK--DGSIVAMVGDGIN----DSPALAA--ADVGMAIGAGTD--IAIEAADYVLMR 907 (997)
Q Consensus 849 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~n----D~~al~~--A~vgia~~~~~~--~~~~~ad~vl~~ 907 (997)
++|..=.++++..+. .|++|+.+|.|.. =+.+|.. |.|-++-....+ .....||+++..
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~A 207 (285)
T PRK14191 139 ATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVG 207 (285)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEe
Confidence 344444445554432 4899999999922 1234433 445554433322 345789998864
No 320
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.89 E-value=2.4e+02 Score=30.72 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=33.4
Q ss_pred cChhhHHHHHHHHh--hcCCEEEEEcCCcC----CHHHHhc--CCeeEEecCCc--HHHHHhcCEEEecC
Q 001906 849 VMPAGKADAVRSFQ--KDGSIVAMVGDGIN----DSPALAA--ADVGMAIGAGT--DIAIEAADYVLMRN 908 (997)
Q Consensus 849 ~~p~~K~~~v~~l~--~~g~~v~~vGDg~n----D~~al~~--A~vgia~~~~~--~~~~~~ad~vl~~~ 908 (997)
++|..=.++++.+. -+|++|+.+|-|.. =+.+|.. |.|-+.-.... ......||+++..-
T Consensus 140 cTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAv 209 (286)
T PRK14175 140 CTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAV 209 (286)
T ss_pred CcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECC
Confidence 34444444454442 34899999999851 1234433 44555543222 23456799998643
No 321
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=29.34 E-value=3e+02 Score=22.61 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=40.3
Q ss_pred cccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec
Q 001906 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ 197 (997)
Q Consensus 132 l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~~ 197 (997)
+...|..|+.=.-+..+++++++- .+.+.|..|.. ...++|....++.||++....
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~-~s~~di~~~~~~~g~~~~~~~ 57 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKP---------GDTLLVLATDP-STTRDIPKFCTFLGHELLAQE 57 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCC-chHHHHHHHHHHcCCEEEEEE
Confidence 345688999888888888887642 23455555533 578899999999999986433
No 322
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=29.13 E-value=2.8e+02 Score=22.82 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=40.6
Q ss_pred cccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001906 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (997)
Q Consensus 132 l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~ 196 (997)
+...|..|+.=.-+.++++++++. .+.+.|..|.. ...++|....+..||.+...
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~---------G~~l~V~~d~~-~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKP---------GEILEVISDCP-QSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEecCc-hHHHHHHHHHHHcCCEEEEE
Confidence 356789999988889999987753 23345555533 57889999999999998643
No 323
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=28.89 E-value=1.2e+02 Score=25.04 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=41.9
Q ss_pred EEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhhh
Q 001906 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (997)
Q Consensus 50 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (997)
+.+.|+.|+.-.-...+++++++.- ..+.|..+.+ .....+....+..||+....
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~G---------~~l~V~~d~~-~a~~di~~~~~~~G~~~~~~ 56 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQDG---------EQLEVKASDP-GFARDAQAWCKSTGNTLISL 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCCC---------CEEEEEECCc-cHHHHHHHHHHHcCCEEEEE
Confidence 5678999999999999999988632 2344455433 56789999999999998643
No 324
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=28.76 E-value=1e+02 Score=30.54 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=39.8
Q ss_pred hhhHHHHHHhhcCCCCeeEEEEEeecc-------------------EEEEEECCCCcchHHHHHHHHhc
Q 001906 58 AACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNAIEDA 107 (997)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 107 (997)
++|=|-+|+...++|||.++.+-.+.+ .+.|.||+..++.+++.+..=+.
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~i 81 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEI 81 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhee
Confidence 679999999999999999999865444 45688888888888887766433
No 325
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=28.75 E-value=8.8e+02 Score=27.30 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=41.0
Q ss_pred EEEEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeec------cEEEEEECCCCcchHHHHHHHHh
Q 001906 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQ------NKADVVFDPDLVKDEDIKNAIED 106 (997)
Q Consensus 47 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 106 (997)
..++.|.++.-..-...+++.++....|.++.+-... .-+.|.|. +.++..++++.
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~----~~e~A~~Ai~~ 168 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFG----SEADSQRAIKN 168 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEc----cHHHHHHHHHH
Confidence 4568999999888889999999999889888774322 34778774 34555566654
No 326
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=28.13 E-value=2.6e+02 Score=30.73 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=51.7
Q ss_pred hhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhhhcccCCCCCCCCcceecccccCCc
Q 001906 58 AACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGM 137 (997)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~l~i~gm 137 (997)
..|++.+++.++..|||.+++.- + ..+...+..+..|+. .....++. +-.+.+.++++.
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~~-----------s---re~~l~~L~~~lg~~-~~~~l~~n-----PLP~~~vV~~~~- 129 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRFI-----------S---REEALKELQPWLGFG-ALLMLDEN-----PLPDVFVVTPDD- 129 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEEe-----------C---HHHHHHHHHHHcCch-hhhcCCCC-----CCCceEEEEeCC-
Confidence 88999999999999999877552 1 235566666777886 32222111 112233344433
Q ss_pred cChhhHHHHHHhhhcCCCceeEE
Q 001906 138 TCAACVNSVEGILRGLPGVKRAV 160 (997)
Q Consensus 138 ~C~~C~~~ie~~l~~~~GV~~v~ 160 (997)
+.-...+.+.+++++||.+++
T Consensus 130 --p~~~~~i~~~l~~l~gV~~V~ 150 (297)
T COG2177 130 --PPQVKAIAAALRDLPGVAEVD 150 (297)
T ss_pred --CccHHHHHHHHHcCccceehh
Confidence 455677888899999998765
No 327
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=27.95 E-value=1.9e+02 Score=24.61 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=50.3
Q ss_pred EEEEEECCCCcchHHHHHHHHhcCcchhhhcccCCCCCCCCcceecccccCCccChhhHHHHHHhhhcCCCceeEEe
Q 001906 85 KADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV 161 (997)
Q Consensus 85 ~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v 161 (997)
...+..+..+-.++.+...++.-||.++-+.-.... .+...+.++.++ -......+.+.|+++..|.++++
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~---~~~~sriti~v~---~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNT---DAQNINIELTVA---SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecC---CCCEEEEEEEEC---CCchHHHHHHHHhcCcCeEEEEE
Confidence 344445555556789999999999998765443322 233445666664 37788999999999999998875
No 328
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=27.94 E-value=1.5e+02 Score=27.54 Aligned_cols=65 Identities=20% Similarity=0.364 Sum_probs=40.6
Q ss_pred cCCCcHhHHHHHHHHHHCCCeE---EEEcCCCHHHHHH------HHHHcCCceEEecc----ChhhHHHHHHHHhhcC
Q 001906 801 ADPVKREAAVVVEGLLKMGVRP---VMVTGDNWRTAHA------VAREIGIQDVMADV----MPAGKADAVRSFQKDG 865 (997)
Q Consensus 801 ~d~~~~~~~~~i~~l~~~gi~~---~i~Tgd~~~~a~~------ia~~~gi~~~~~~~----~p~~K~~~v~~l~~~g 865 (997)
...++++.++-++.|++.|+.+ ++..||++.+..+ .|+++|+.-....+ +.++-.+.++.+....
T Consensus 9 a~~i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~ 86 (117)
T PF00763_consen 9 AKEIKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDP 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 3456788999999999998774 4678888776554 47889997544443 5555566777776554
No 329
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.75 E-value=2.2e+02 Score=31.17 Aligned_cols=59 Identities=29% Similarity=0.260 Sum_probs=32.4
Q ss_pred cChhhHHHHHHHHh--hcCCEEEEEcCCcC----CHHHHhc--CCeeEEecCC--cHHHHHhcCEEEec
Q 001906 849 VMPAGKADAVRSFQ--KDGSIVAMVGDGIN----DSPALAA--ADVGMAIGAG--TDIAIEAADYVLMR 907 (997)
Q Consensus 849 ~~p~~K~~~v~~l~--~~g~~v~~vGDg~n----D~~al~~--A~vgia~~~~--~~~~~~~ad~vl~~ 907 (997)
++|..=.++++... -+|+.|+.+|.+.. =+.+|.. |-|-++-... -......||+++..
T Consensus 140 cTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsA 208 (297)
T PRK14186 140 CTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAA 208 (297)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEc
Confidence 34444444555443 24899999999843 1234444 4444444322 23345679998863
No 330
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=27.72 E-value=83 Score=26.86 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=31.5
Q ss_pred chhhhHHHHhhhhcCCCceEEEeecCCCeEEEEecCCCCCchhhhhhhcccC
Q 001906 213 CELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRS 264 (997)
Q Consensus 213 c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~~d~~~~~~~~i~~~i~~~g 264 (997)
...-|...+-.|+..++|-.+=+|.-.....|-||+..++.+++.+.++...
T Consensus 9 t~eeA~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~k 60 (88)
T PF11491_consen 9 TPEEAMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFK 60 (88)
T ss_dssp TTTTTHHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTT
T ss_pred CHHHHHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcC
Confidence 4456777888899999999999999999999999999999999999888754
No 331
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=27.05 E-value=3.4e+02 Score=22.32 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=41.3
Q ss_pred cccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec
Q 001906 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ 197 (997)
Q Consensus 132 l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~~ 197 (997)
+.+.|+.|+.=.-+..+++++++. .+.+.|..|.. ...++|....++.||......
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~-~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDP-GFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCc-cHHHHHHHHHHHcCCEEEEEE
Confidence 456799999988889999987752 23445555433 568899999999999986433
No 332
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=26.65 E-value=1.3e+02 Score=30.79 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=49.8
Q ss_pred HHHHcCCeEEEEEE--------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCe--E-EEEcCCCHHHHHHHHHH
Q 001906 777 ELEESARTGILVAY--------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVR--P-VMVTGDNWRTAHAVARE 839 (997)
Q Consensus 777 ~~~~~g~~~i~va~--------------~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~--~-~i~Tgd~~~~a~~ia~~ 839 (997)
-++..|+++++++. +-.++|+-.....-.+..++.++.|++.|.+ + +++-|... ...++++
T Consensus 107 ~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~ 184 (197)
T TIGR02370 107 MLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADK 184 (197)
T ss_pred HHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHH
Confidence 34566777776654 3368888888888999999999999999875 4 55555443 3568889
Q ss_pred cCCceEE
Q 001906 840 IGIQDVM 846 (997)
Q Consensus 840 ~gi~~~~ 846 (997)
+|-+.+.
T Consensus 185 ~gad~~~ 191 (197)
T TIGR02370 185 IGADVYG 191 (197)
T ss_pred hCCcEEe
Confidence 9886544
No 333
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.62 E-value=1.1e+02 Score=26.71 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHhcCCceeeeccCCccceeeeecCccchhhhHHHHhhhhcCCCceEEEeecCCCeEEEEe
Q 001906 177 ISKDDIANAIEDAGFEASFVQSSGQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLF 246 (997)
Q Consensus 177 ~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~l~v~gm~c~~ca~~ie~~l~~~~GV~~~~vn~~~~~~~V~~ 246 (997)
.+++.|.+.++++||.++... + ..+...||++.+.+++.+..+.|.-
T Consensus 12 ~~~dri~~~l~e~g~~v~~eG----D-------------------~ivas~pgis~ieik~E~kkL~v~t 58 (96)
T COG4004 12 PDPDRIMRGLSELGWTVSEEG----D-------------------RIVASSPGISRIEIKPENKKLLVNT 58 (96)
T ss_pred CCHHHHHHHHHHhCeeEeecc----c-------------------EEEEecCCceEEEEecccceEEEec
Confidence 368899999999999886421 1 2345678999999999999999875
No 334
>PRK11018 hypothetical protein; Provisional
Probab=26.62 E-value=1.9e+02 Score=24.60 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=43.1
Q ss_pred EEEEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhh
Q 001906 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (997)
Q Consensus 48 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (997)
..+...|..|+.-.-+.++++++++.-+ .+.|..+.+ .+...+....++.||++..
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~G~---------~L~V~~d~~-~a~~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKKGE---------ILEVVSDCP-QSINNIPLDARNHGYTVLD 64 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCCCC---------EEEEEeCCc-cHHHHHHHHHHHcCCEEEE
Confidence 4689999999999999999999886332 233444433 5678899999999999854
No 335
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=26.46 E-value=66 Score=33.26 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=44.5
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHHcCCceEEec
Q 001906 793 NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTG-DNWRTAHAVAREIGIQDVMAD 848 (997)
Q Consensus 793 ~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tg-d~~~~a~~ia~~~gi~~~~~~ 848 (997)
.+++.-++--.--++.++.+++|++.|+|--+++| -.....+..++++|-+-++..
T Consensus 157 d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~~~~d 213 (227)
T COG5012 157 DLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGADAYAED 213 (227)
T ss_pred cEEechHHHHHHHHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHHhCCCccCcC
Confidence 57788888888888899999999999999655555 455577888999999765544
No 336
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=26.36 E-value=6.6e+02 Score=25.96 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=13.8
Q ss_pred CCCEEEecCCCcccccEEEEe
Q 001906 460 SGDTLKVLPGTKLPADGIVVW 480 (997)
Q Consensus 460 ~GDii~v~~G~~iPaD~~vl~ 480 (997)
-|....+...|.+|-|.+.++
T Consensus 41 ~~~~~~i~~~~L~~GDiI~l~ 61 (230)
T PF00122_consen 41 DGRWQKIPSSELVPGDIIILK 61 (230)
T ss_dssp TTEEEEEEGGGT-TTSEEEEE
T ss_pred ccccccchHhhccceeeeecc
Confidence 366777777777777777665
No 337
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=26.29 E-value=1.6e+02 Score=27.23 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=31.9
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE
Q 001906 804 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM 846 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~ 846 (997)
-.+++.++++.++++|++++.+|++.. ....+++.|...+.
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~~~~~~ 95 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHGVPVII 95 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcCCcEEE
Confidence 358899999999999999999998764 44567766665444
No 338
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=25.81 E-value=2.5e+02 Score=30.78 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=57.4
Q ss_pred EEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHC----CCeEEEEcCCC----HHHHHHHHHHcCCc----eEEeccChh
Q 001906 785 GILVAYDDNLIGVMGIADPVKREAAVVVEGLLKM----GVRPVMVTGDN----WRTAHAVAREIGIQ----DVMADVMPA 852 (997)
Q Consensus 785 ~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~----gi~~~i~Tgd~----~~~a~~ia~~~gi~----~~~~~~~p~ 852 (997)
.+.++.| +=|++..--.+-+++.++++.|.+. .|.++.+|.-. ...|..+.+.||.. ++...-+|
T Consensus 35 ~fgfafD--IDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSHsP- 111 (389)
T KOG1618|consen 35 TFGFAFD--IDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSHSP- 111 (389)
T ss_pred ceeEEEe--cccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhcCh-
Confidence 4556665 5567777788889999999999988 78889998642 34578888888884 22222233
Q ss_pred hHHHHHHHHh-hcCCEEEEEcCC
Q 001906 853 GKADAVRSFQ-KDGSIVAMVGDG 874 (997)
Q Consensus 853 ~K~~~v~~l~-~~g~~v~~vGDg 874 (997)
.+.+- -+.+.|+++|+|
T Consensus 112 -----~r~l~~~~~k~vLv~G~~ 129 (389)
T KOG1618|consen 112 -----FRLLVEYHYKRVLVVGQG 129 (389)
T ss_pred -----HHHHhhhhhceEEEecCC
Confidence 22222 456789999987
No 339
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=25.66 E-value=3.6e+02 Score=21.79 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=40.2
Q ss_pred cccCCccChhhHHHHHHhhhcCCCceeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001906 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (997)
Q Consensus 132 l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~ 196 (997)
+...|+.|+.=.-+..+++++++ ..+.+.|..|.. ...++|...+++.||.....
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~---------~g~~l~v~~d~~-~~~~~i~~~~~~~g~~~~~~ 56 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLK---------SGEVLEVLLDDP-GAVEDIPAWAKETGHEVLEV 56 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCC---------CCCEEEEEecCC-cHHHHHHHHHHHcCCEEEEE
Confidence 34578999988888888887754 234555666543 46889999999999997543
No 340
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=25.63 E-value=2.5e+02 Score=32.74 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChh--hH---HHHHHHHhhcCCE
Q 001906 806 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPA--GK---ADAVRSFQKDGSI 867 (997)
Q Consensus 806 ~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~--~K---~~~v~~l~~~g~~ 867 (997)
+...+.=++|++.|+.+++..|+.......++++.++..+++.-.++ ++ ..+.+.+.+.|-.
T Consensus 61 esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~ 127 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGIH 127 (429)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCce
Confidence 45556667888999999999999999999999999999999876543 33 2244445555543
No 341
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=25.52 E-value=4.1e+02 Score=24.26 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=13.9
Q ss_pred HHHHHHhhhHHHHHHHHHhcCCCeEEEEEcC
Q 001906 413 YLEILAKGKTSDAIKKLVELAPATALLVVKD 443 (997)
Q Consensus 413 ~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~ 443 (997)
++..+.++|.++..+++.+....--+|+..+
T Consensus 33 f~~~RpqkK~~k~~~~~~~~Lk~Gd~VvT~g 63 (106)
T PRK05585 33 FLIIRPQQKRQKEHKKMLSSLAKGDEVVTNG 63 (106)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3344444444445555544333344444443
No 342
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=25.24 E-value=6e+02 Score=30.23 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=68.1
Q ss_pred hHHHHHHHHHcCCeEEE-EEECCeEEEEEEecCCCcHhHHHHHHHHHH--CCCeEEEEcCCCH---HHHHHHHHHcCCce
Q 001906 771 VESFVVELEESARTGIL-VAYDDNLIGVMGIADPVKREAAVVVEGLLK--MGVRPVMVTGDNW---RTAHAVAREIGIQD 844 (997)
Q Consensus 771 ~~~~~~~~~~~g~~~i~-va~~~~~lG~i~~~d~~~~~~~~~i~~l~~--~gi~~~i~Tgd~~---~~a~~ia~~~gi~~ 844 (997)
+.+..+.+.+.+...+. +..+++++|++..+|-++..... ...++ ..+.+...-|... ..+..+. +.|++-
T Consensus 180 l~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p--~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~-~ag~d~ 256 (495)
T PTZ00314 180 LEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYP--NASLDSNGQLLVGAAISTRPEDIERAAALI-EAGVDV 256 (495)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCc--hhhhccCCCEEEEEEECCCHHHHHHHHHHH-HCCCCE
Confidence 44555566666665444 44568999999999887654432 12222 2356656666544 3333333 357766
Q ss_pred EEecc---ChhhHHHHHHHHhhc-CCEEEEEcCCc--CCHHHHhcCCe
Q 001906 845 VMADV---MPAGKADAVRSFQKD-GSIVAMVGDGI--NDSPALAAADV 886 (997)
Q Consensus 845 ~~~~~---~p~~K~~~v~~l~~~-g~~v~~vGDg~--nD~~al~~A~v 886 (997)
+.-.. ......+.++++++. +...++.|+.. .|+..+..|++
T Consensus 257 i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGa 304 (495)
T PTZ00314 257 LVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGA 304 (495)
T ss_pred EEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCC
Confidence 55444 222335688888876 45567778876 47777877773
No 343
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=25.15 E-value=3.8e+02 Score=24.46 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=46.9
Q ss_pred EEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChh-hHHHHHHHHhhcCCE--EEEEcC
Q 001906 797 VMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPA-GKADAVRSFQKDGSI--VAMVGD 873 (997)
Q Consensus 797 ~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~-~K~~~v~~l~~~g~~--v~~vGD 873 (997)
++.+.|.-+++..+..++|.+.|++++ .|+ .|+..+.+ .|++-....-.++ ...++.+.++++|+. |..+-|
T Consensus 3 ~isv~d~~K~~~~~~a~~l~~~G~~i~-AT~---gTa~~L~~-~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 3 FLSVSDHVKAMLVDLAPKLSSDGFPLF-ATG---GTSRVLAD-AGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred EEEEEcccHHHHHHHHHHHHHCCCEEE-ECc---HHHHHHHH-cCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 466788889999999999999999884 765 35555544 7885322221223 345677777652442 333344
Q ss_pred CcC
Q 001906 874 GIN 876 (997)
Q Consensus 874 g~n 876 (997)
+.+
T Consensus 78 ~~~ 80 (112)
T cd00532 78 PRR 80 (112)
T ss_pred CCc
Confidence 433
No 344
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=24.91 E-value=4e+02 Score=28.23 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=57.2
Q ss_pred EEEEEecCCCcHhHHHHHHHHHHC---CCeEEEEcCCCHHHHHHHHHHcCCceEEe--cc----ChhhHHHHHHHHhhcC
Q 001906 795 IGVMGIADPVKREAAVVVEGLLKM---GVRPVMVTGDNWRTAHAVAREIGIQDVMA--DV----MPAGKADAVRSFQKDG 865 (997)
Q Consensus 795 lG~i~~~d~~~~~~~~~i~~l~~~---gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~--~~----~p~~K~~~v~~l~~~g 865 (997)
+-++.=.+.+.|+..++++..++. |+.++-.+.|+...++++++. |-+-+.- +. ..-...+.++.+.+..
T Consensus 96 lEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~-G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~ 174 (248)
T cd04728 96 LEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA-GCAAVMPLGSPIGSGQGLLNPYNLRIIIERA 174 (248)
T ss_pred EEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhC
Confidence 334444567789999999999998 999997888999999998876 6654311 00 0112366777777665
Q ss_pred CEEEEEcCCcCCHH
Q 001906 866 SIVAMVGDGINDSP 879 (997)
Q Consensus 866 ~~v~~vGDg~nD~~ 879 (997)
..-++++-|++-.+
T Consensus 175 ~vpVI~egGI~tpe 188 (248)
T cd04728 175 DVPVIVDAGIGTPS 188 (248)
T ss_pred CCcEEEeCCCCCHH
Confidence 55667777766443
No 345
>PRK09579 multidrug efflux protein; Reviewed
Probab=24.85 E-value=1.7e+03 Score=29.33 Aligned_cols=138 Identities=11% Similarity=0.027 Sum_probs=72.7
Q ss_pred hhHHHHHHhhcCCCCeeEEEEEee-----ccEEEEEECCC---CcchHHHHHHHHhc--Cc-chhhhcccCCCCCCCCcc
Q 001906 59 ACSNSVEGALMGLKGVAKASVALL-----QNKADVVFDPD---LVKDEDIKNAIEDA--GF-EAEILAESSTSGPKPQGT 127 (997)
Q Consensus 59 ~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~---~~~~~~i~~~i~~~--Gy-~~~~~~~~~~~~~~~~~~ 127 (997)
...+.+|+.+++.|++........ .+...+...+. ..+.+++.+.+++. .+ +++...-...........
T Consensus 575 ~~~~~ie~~l~~~p~v~~~~~~~G~~~~~~~~~~i~l~~~~~r~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~g~g~~ 654 (1017)
T PRK09579 575 AYTDEFTPIFKSFPEYYSSFQINGFNGVQSGIGGFLLKPWNERERTQMELLPLVQAKLEEIPGLQIFGFNLPSLPGTGEG 654 (1017)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEeccCCCccceEEEEecchHhccCCHHHHHHHHHHHHhcCCCcEEEeecCCCCCCCCCC
Confidence 567888998988899876653221 12233443322 11233343333321 12 111100000000000011
Q ss_pred eecccccCCc-cC---hhhHHHHHHhhhcCCCceeEEeecC--CCeEEEEeCCC-----CCCHHHHHHHHHhc--CCcee
Q 001906 128 IVGQYTIGGM-TC---AACVNSVEGILRGLPGVKRAVVALA--TSLGEVEYDPT-----VISKDDIANAIEDA--GFEAS 194 (997)
Q Consensus 128 ~~~~l~i~gm-~C---~~C~~~ie~~l~~~~GV~~v~v~~~--~~~~~v~~d~~-----~~~~~~i~~~i~~~--Gy~~~ 194 (997)
..+.+++.|- +- ..-+.++++.+++.+|+.+++.+.. ...+.+..|+. -++.+++.+.+... |..+.
T Consensus 655 ~~v~i~i~gg~d~~~L~~~a~~l~~~l~~~~g~~~v~~~~~~~~~el~i~vd~~ka~~~Gls~~~i~~~l~~~~~G~~~~ 734 (1017)
T PRK09579 655 LPFQFVINTANDYESLLQVAQRVKQRAQESGKFAFLDIDLAFDKPEVVVDIDRAKAAQMGVSMQDLGGTLATLLGEGEIN 734 (1017)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHcCCCcEEeeccccCCCceEEEEECHHHHHHcCCCHHHHHHHHHHHhCCceee
Confidence 1245566542 21 2357889999999999999997764 44666666664 26788999988863 54444
Q ss_pred ee
Q 001906 195 FV 196 (997)
Q Consensus 195 ~~ 196 (997)
..
T Consensus 735 ~~ 736 (1017)
T PRK09579 735 RF 736 (1017)
T ss_pred EE
Confidence 33
No 346
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=24.39 E-value=3.2e+02 Score=28.44 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=47.1
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCH-----HHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcCCEEEE
Q 001906 806 REAAVVVEGLLKMGVRPVMVTGDNW-----RTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAM 870 (997)
Q Consensus 806 ~~~~~~i~~l~~~gi~~~i~Tgd~~-----~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~ 870 (997)
++..+++.++++.|+. .+++||.. .....+++.+|+ .+++.+--.+|.++++.+...|-+...
T Consensus 73 ~~l~~~l~~~~~~g~~-~vv~G~i~sd~~~~~~e~v~~~~gl-~~~~PLw~~~~~el~~~~~~~G~~~~i 140 (218)
T TIGR03679 73 EDLKGALKELKREGVE-GIVTGAIASRYQKSRIERICEELGL-KVFAPLWGRDQEEYLRELVERGFRFII 140 (218)
T ss_pred HHHHHHHHHHHHcCCC-EEEECCcccHhHHHHHHHHHHhCCC-eEEeehhcCCHHHHHHHHHHCCCEEEE
Confidence 4467788888887876 56777764 556688889998 566666667889999999998876544
No 347
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.84 E-value=2.1e+02 Score=25.27 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=39.7
Q ss_pred HhHHHHHHHHHHCC--CeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHH
Q 001906 806 REAAVVVEGLLKMG--VRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRS 860 (997)
Q Consensus 806 ~~~~~~i~~l~~~g--i~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~ 860 (997)
.+..+.++++++.+ .+++++|+........-+.+.|...+... |-...++.+.
T Consensus 56 ~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~k--p~~~~~l~~~ 110 (112)
T PF00072_consen 56 GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSK--PFSPEELRAA 110 (112)
T ss_dssp SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEES--SSSHHHHHHH
T ss_pred ccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEEC--CCCHHHHHHh
Confidence 56678888888865 78999998888777778889999988876 4344444443
No 348
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=23.73 E-value=2.8e+02 Score=30.36 Aligned_cols=88 Identities=26% Similarity=0.395 Sum_probs=0.0
Q ss_pred EEECCeEEEEEEecCCCcHhHHHHHHHHHHC--CCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcC
Q 001906 788 VAYDDNLIGVMGIADPVKREAAVVVEGLLKM--GVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 865 (997)
Q Consensus 788 va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~--gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g 865 (997)
++..-...|.+.+..++.++.+..-+.+.+. .+.++++ ......++|+++++.|
T Consensus 125 iavGp~~~g~vdl~~p~~eNl~~~A~algk~v~dltV~vL------------------------dRpRH~~lI~eiR~~G 180 (319)
T PRK09479 125 LAVGPEAKGVVDLDAPVAENLRAVAKALGKDVSDLTVVVL------------------------DRPRHEELIAEIREAG 180 (319)
T ss_pred eeeCcccCCeecCCCCHHHHHHHHHHHcCCChhHeEEEEE------------------------cCchHHHHHHHHHHcC
Q ss_pred CEEEEEcCCcCCH-HHHhcC------CeeEEecCCcHHHHHhc
Q 001906 866 SIVAMVGDGINDS-PALAAA------DVGMAIGAGTDIAIEAA 901 (997)
Q Consensus 866 ~~v~~vGDg~nD~-~al~~A------~vgia~~~~~~~~~~~a 901 (997)
.+|-.+.|| |+ .++..+ |+=+..|.+++-+..+|
T Consensus 181 ari~Li~DG--DVa~ai~~~~~~s~vD~~~GiGGaPEGVlaAa 221 (319)
T PRK09479 181 ARVKLISDG--DVAGAIATAFPDTGVDILMGIGGAPEGVLAAA 221 (319)
T ss_pred CeEEEeccc--cHHHHHHHhcCCCCeeEEEEcCcChHHHHHHH
No 349
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=23.72 E-value=1.3e+02 Score=30.07 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=53.1
Q ss_pred ecCCCcHhHHHHHHHH-HHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcCCEEEEEcCC
Q 001906 800 IADPVKREAAVVVEGL-LKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDG 874 (997)
Q Consensus 800 ~~d~~~~~~~~~i~~l-~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg 874 (997)
+.+..-+++.+..+++ .+.|..+++..| .+|..+.+.++++-+--..+..|=.+.+...+..+.+++++|..
T Consensus 14 v~~~~~e~~v~~a~~~~~~~g~dViIsRG---~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~ 86 (176)
T PF06506_consen 14 VIEASLEEAVEEARQLLESEGADVIISRG---GTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYP 86 (176)
T ss_dssp EEE--HHHHHHHHHHHHTTTT-SEEEEEH---HHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEES
T ss_pred EEEecHHHHHHHHHHhhHhcCCeEEEECC---HHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecc
Confidence 3444557788888888 889999999977 57788888889988888888888888888888889999999875
No 350
>PRK10481 hypothetical protein; Provisional
Probab=23.71 E-value=8.6e+02 Score=25.49 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=65.9
Q ss_pred EEcCeEEEEeeHhhhhhcCCCCChhhHHHHHHHHHcCCeEEEEEECCeEEEEEEecC---CCcHhHHHHHHHHHHCCCeE
Q 001906 746 FISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIAD---PVKREAAVVVEGLLKMGVRP 822 (997)
Q Consensus 746 ~~~g~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d---~~~~~~~~~i~~l~~~gi~~ 822 (997)
.-+|..+.++..+... ...+..+.++++|...+.++.-+.|=|+-..+. .+.......+..+.. |-++
T Consensus 62 L~dG~~v~~s~~~v~~--------~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~-g~ri 132 (224)
T PRK10481 62 LNDGQQVHVSKQKVER--------DLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVG-GHQV 132 (224)
T ss_pred ecCCCEEEEEHHHHHH--------HHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHhcC-CCeE
Confidence 3478888887766543 355667888999999988887666655444332 344555666666654 4677
Q ss_pred EEEcCCCHHHHHHHH--HHcCCceEEeccCh-----hhHHHHHHHHhhcCCE
Q 001906 823 VMVTGDNWRTAHAVA--REIGIQDVMADVMP-----AGKADAVRSFQKDGSI 867 (997)
Q Consensus 823 ~i~Tgd~~~~a~~ia--~~~gi~~~~~~~~p-----~~K~~~v~~l~~~g~~ 867 (997)
.++|-.......... ...|+...++..+| +.-.+..+.|+..|..
T Consensus 133 GVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD 184 (224)
T PRK10481 133 GVIVPVEEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGAD 184 (224)
T ss_pred EEEEeCHHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCC
Confidence 777765444332222 23366555554332 2344455555554443
No 351
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.64 E-value=3.8e+02 Score=29.13 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=33.7
Q ss_pred cChhhHHHHHHHHh--hcCCEEEEEcCC-cCCHH---HHhcCC--eeEEecCCc--HHHHHhcCEEEecC
Q 001906 849 VMPAGKADAVRSFQ--KDGSIVAMVGDG-INDSP---ALAAAD--VGMAIGAGT--DIAIEAADYVLMRN 908 (997)
Q Consensus 849 ~~p~~K~~~v~~l~--~~g~~v~~vGDg-~nD~~---al~~A~--vgia~~~~~--~~~~~~ad~vl~~~ 908 (997)
++|..=.++++... -.|.+|..+|.+ .-=-| +|...+ |-++..... ......||+++..-
T Consensus 134 cTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Av 203 (279)
T PRK14178 134 CTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAA 203 (279)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECC
Confidence 34444444444443 248999999999 33344 554444 555543322 23456799998643
No 352
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=23.44 E-value=7.3e+02 Score=25.02 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=50.0
Q ss_pred HhHHHHHHHHHHCCCeEEE--EcCCCHHHHHHHHHHcCCceEEecc--Chh-----hHHHHHHHHhhcCCEEEEEcCCcC
Q 001906 806 REAAVVVEGLLKMGVRPVM--VTGDNWRTAHAVAREIGIQDVMADV--MPA-----GKADAVRSFQKDGSIVAMVGDGIN 876 (997)
Q Consensus 806 ~~~~~~i~~l~~~gi~~~i--~Tgd~~~~a~~ia~~~gi~~~~~~~--~p~-----~K~~~v~~l~~~g~~v~~vGDg~n 876 (997)
....+.++.+++.|+++.+ ++-.++..+.. +...|.+-+.... .+. .-.+.++.+++..+.-.+++-|+|
T Consensus 90 ~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~ 168 (202)
T cd04726 90 STIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT 168 (202)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC
Confidence 4567899999999999885 67777777776 6667776533211 111 113445555543333445555665
Q ss_pred --CHHHHhcCC-eeEEecC
Q 001906 877 --DSPALAAAD-VGMAIGA 892 (997)
Q Consensus 877 --D~~al~~A~-vgia~~~ 892 (997)
++..+..++ -++.+|+
T Consensus 169 ~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 169 PDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred HHHHHHHHhcCCCEEEEee
Confidence 444444443 2455553
No 353
>PRK15108 biotin synthase; Provisional
Probab=23.33 E-value=7.8e+02 Score=27.66 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=51.6
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----------EEecc----ChhhHHHHHHHHhhcCCEEE--
Q 001906 806 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----------VMADV----MPAGKADAVRSFQKDGSIVA-- 869 (997)
Q Consensus 806 ~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~----------~~~~~----~p~~K~~~v~~l~~~g~~v~-- 869 (997)
+...++++.+|+.|+.+.+--|.-......-.++.|++. .|.++ +.+++.+.++.+++.|-.+.
T Consensus 111 e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg 190 (345)
T PRK15108 111 PYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSG 190 (345)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeE
Confidence 778899999999999876555666666666677889983 33333 34577888898888886554
Q ss_pred -EEcCCcCC
Q 001906 870 -MVGDGIND 877 (997)
Q Consensus 870 -~vGDg~nD 877 (997)
++|=|..+
T Consensus 191 ~i~GlgEt~ 199 (345)
T PRK15108 191 GIVGLGETV 199 (345)
T ss_pred EEEeCCCCH
Confidence 67766544
No 354
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.17 E-value=4.7e+02 Score=28.63 Aligned_cols=59 Identities=12% Similarity=0.215 Sum_probs=32.2
Q ss_pred cChhhHHHHHHHHh--hcCCEEEEEcCCcC----CHHHHhc------CCeeEEecCC--cHHHHHhcCEEEec
Q 001906 849 VMPAGKADAVRSFQ--KDGSIVAMVGDGIN----DSPALAA------ADVGMAIGAG--TDIAIEAADYVLMR 907 (997)
Q Consensus 849 ~~p~~K~~~v~~l~--~~g~~v~~vGDg~n----D~~al~~------A~vgia~~~~--~~~~~~~ad~vl~~ 907 (997)
++|..=.++++... -.|+.|+.+|-+.. =+.+|.+ |.|-++-... -......||+++..
T Consensus 139 cTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsA 211 (293)
T PRK14185 139 ATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAA 211 (293)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEc
Confidence 34444444555443 24899999999843 1234443 4455554322 23344678988863
No 355
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=22.90 E-value=4.7e+02 Score=33.94 Aligned_cols=215 Identities=14% Similarity=0.132 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeE----EEEEc-CCCceeeEEEEecCCCCCCCEEEecCCCcccccEE
Q 001906 403 MLITFVLFGKYLEILAKGKTSDAIKKLVELAPATA----LLVVK-DKGKCIEEREIDALLIQSGDTLKVLPGTKLPADGI 477 (997)
Q Consensus 403 ~l~~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~----~v~~~-~~g~~~~~~~i~~~~l~~GDii~v~~G~~iPaD~~ 477 (997)
++++...++.+.|.+++ ++.+.++++........ +.... .+=.++....+..-+.+|-|.+.++.. .+-+|=-
T Consensus 45 vi~~~~~i~~~qe~~a~-~~~~~L~~~~~~~~~ViRdg~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~~-~l~VdeS 122 (917)
T TIGR01116 45 ILVANAIVGVWQERNAE-KAIEALKEYESEHAKVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLK-TLRVDQS 122 (917)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhccCCCceEEEECCEEEEEEHHHCCCCCEEEECCCCEeeccEEEEEec-ceEEEcc
Confidence 34445556777777766 55666776654322111 11111 111111456778888999999988764 2445555
Q ss_pred EEeccee-eeccc--cCCCCc-cc----ccCCCCceecceEEeeeeEEEEEEEecCchHHHHHHHHHHHhh-ccCChhHH
Q 001906 478 VVWGTSY-VNESM--VTGEAV-PV----LKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ-MSKAPIQK 548 (997)
Q Consensus 478 vl~G~~~-Vdes~--LTGEs~-pv----~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~-~~~~~~~~ 548 (997)
.+.|++. |.-.. ..++.. +. .-..|..+..|....-=..++.-+..|. +.+..+..++.. .-...+.+
T Consensus 123 ~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gk---i~~~~~~~~~~~t~lq~~l~~ 199 (917)
T TIGR01116 123 ILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGK---IRDEMRAAEQEDTPLQKKLDE 199 (917)
T ss_pred cccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHH---HHHHhhccCCCCCCHHHHHHH
Confidence 5666654 22211 112211 11 1356888888864332222222222221 111111111111 11223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCccHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHH
Q 001906 549 FADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGV 626 (997)
Q Consensus 549 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~svlv~~~P~al~la~p~~~~~~~~~ 626 (997)
....+..+.+.+.+++.++....|........+...|. ..+..++..+++.+..+.|..+.++...+.....+.
T Consensus 200 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~v~~iP~~Lp~~vti~l~~~~~~m~~~ 273 (917)
T TIGR01116 200 FGELLSKVIGLICILVWVINIGHFNDPALGGGWIQGAI----YYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKK 273 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHH----HHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHHC
Confidence 55555554444333333332221110000000000000 124456667788888899999988888887765543
No 356
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=22.87 E-value=1.7e+02 Score=29.20 Aligned_cols=86 Identities=9% Similarity=0.109 Sum_probs=54.8
Q ss_pred ecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH---cCCc----eEEeccChhhH------HHHHHHHhhcCC
Q 001906 800 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE---IGIQ----DVMADVMPAGK------ADAVRSFQKDGS 866 (997)
Q Consensus 800 ~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~---~gi~----~~~~~~~p~~K------~~~v~~l~~~g~ 866 (997)
+.-++.||+.+.|++-++.|+++++-|......-+-+-.. -.+. .+|. .+-..| .++.+.......
T Consensus 100 lkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfD-ttiG~KrE~~SY~kIa~~iGl~p~ 178 (229)
T COG4229 100 LKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFD-TTIGKKRESQSYAKIAGDIGLPPA 178 (229)
T ss_pred cccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceee-ccccccccchhHHHHHHhcCCCch
Confidence 4668999999999999999999999876554332211110 0111 2222 122223 235555555567
Q ss_pred EEEEEcCCcCCHHHHhcCCe
Q 001906 867 IVAMVGDGINDSPALAAADV 886 (997)
Q Consensus 867 ~v~~vGDg~nD~~al~~A~v 886 (997)
.++|..|..+...|.+.+++
T Consensus 179 eilFLSDn~~EL~AA~~vGl 198 (229)
T COG4229 179 EILFLSDNPEELKAAAGVGL 198 (229)
T ss_pred heEEecCCHHHHHHHHhcch
Confidence 89999999998888766653
No 357
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=22.69 E-value=3.5e+02 Score=29.26 Aligned_cols=100 Identities=11% Similarity=0.152 Sum_probs=62.9
Q ss_pred hhhhcCCCCChhhHHHHHHHHHc----CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHH
Q 001906 759 LLNESGITIPDHVESFVVELEES----ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH 834 (997)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~----g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~ 834 (997)
++.+.+.+ +.+.+.++..+... ..+-..+-+++..+ -.++..+.....|..|++.|++++++.|-.+....
T Consensus 8 ~~~~~~~~-~~e~~~~l~~f~~~~~~~~~~f~VIK~GG~~~----~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~ 82 (271)
T cd04236 8 FLHQKGGD-PREARYWLTQFQIAMPNDWPAFAVLEVDHSVF----RSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGT 82 (271)
T ss_pred HHHHhCCC-HHHHHHHHHHhhccCCCCCCCEEEEEEChhhh----cCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhh
Confidence 34444322 44556666666653 45666677776544 24456688999999999999999999998776554
Q ss_pred HHHHHcCCceEEecc-ChhhHHHHHHHHhhcCC
Q 001906 835 AVAREIGIQDVMADV-MPAGKADAVRSFQKDGS 866 (997)
Q Consensus 835 ~ia~~~gi~~~~~~~-~p~~K~~~v~~l~~~g~ 866 (997)
... +......+. .-+.-.++++.++..|-
T Consensus 83 ~l~---~~~~~~~~~v~~~~n~~Lv~~L~~~G~ 112 (271)
T cd04236 83 NMS---DLELQAARSRLVKDCKTLVEALQANSA 112 (271)
T ss_pred hhc---CCcchheehhHHHHHHHHHHHHHhCCC
Confidence 444 332222221 11455678888887753
No 358
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=22.47 E-value=2.4e+02 Score=24.54 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=37.4
Q ss_pred EEEEecC---CCcHhHHHHHHHHHHCCCeEEEE-cCCCHHHHHHHHHHcCCc
Q 001906 796 GVMGIAD---PVKREAAVVVEGLLKMGVRPVMV-TGDNWRTAHAVAREIGIQ 843 (997)
Q Consensus 796 G~i~~~d---~~~~~~~~~i~~l~~~gi~~~i~-Tgd~~~~a~~ia~~~gi~ 843 (997)
.++.+.+ ...+-+.+..+.|+++|+++.+- ++++......-|...|++
T Consensus 3 ~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p 54 (94)
T PF03129_consen 3 VIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIP 54 (94)
T ss_dssp EEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTES
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCe
Confidence 4556666 67788889999999999988776 556777777778888874
No 359
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=22.37 E-value=3.1e+02 Score=32.06 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=48.2
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc--Chhh-HHH--HHHHHhhcCCEEEE
Q 001906 806 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV--MPAG-KAD--AVRSFQKDGSIVAM 870 (997)
Q Consensus 806 ~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~--~p~~-K~~--~v~~l~~~g~~v~~ 870 (997)
....+.=+.|++.|+++.+.+||+......+++++++..++... .+.. +.+ +-+.|.+.|-.+..
T Consensus 55 ~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~~~~ 124 (461)
T COG0415 55 QSLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIAVHS 124 (461)
T ss_pred HHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcceEEeeeeechhHHHHHHHHHHHHHhcCceEEE
Confidence 34556667789999999999999999999999999998888754 3322 222 56667777754444
No 360
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=22.33 E-value=3.2e+02 Score=32.34 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=47.7
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC--hhh---HHHHHHHHhhcCCEE
Q 001906 806 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM--PAG---KADAVRSFQKDGSIV 868 (997)
Q Consensus 806 ~~~~~~i~~l~~~gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~--p~~---K~~~v~~l~~~g~~v 868 (997)
+...+.=++|++.|+++++..|+.......++++.++..++.... |.. -..+.+.++..|-.+
T Consensus 55 esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~ 122 (471)
T TIGR03556 55 GCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKAVYWNLDVEPYGRKRDRAVAAALKEAGIAV 122 (471)
T ss_pred HHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHCCCEE
Confidence 455566678889999999999999999999999999999997654 322 234556666666544
No 361
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=21.92 E-value=4e+02 Score=22.04 Aligned_cols=66 Identities=9% Similarity=0.142 Sum_probs=40.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHhcCCceeeeccCCccceeeeecCccchhhhHHHHhhhhcCCCceEEE
Q 001906 168 GEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFR 234 (997)
Q Consensus 168 ~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~l~v~gm~c~~ca~~ie~~l~~~~GV~~~~ 234 (997)
+.+......--..+|...+.+.|....-.+....+.+.+.+... ....-..+-+.|++.+||.+++
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~ 68 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPKGRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVK 68 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecCCeEEEEeEec-CHHHHHHHHHHHhCCCCceEEE
Confidence 34444333334778999998888776543322212245555432 3345577888899999998875
No 362
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=21.88 E-value=1.5e+02 Score=24.14 Aligned_cols=53 Identities=23% Similarity=0.427 Sum_probs=38.0
Q ss_pred EEeCCCCchhhHHHHHHhhcCCCCeeEEEEEeeccEEEEEECCCCcchHHHHHHHHhcCcchhh
Q 001906 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (997)
Q Consensus 50 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (997)
+.+.|+.|+.-.-...+++ ++..- +.+.+..+. ..+.+.+....++.||+...
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~g---------~~l~v~~d~-~~s~~~i~~~~~~~G~~~~~ 54 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEAG---------GEIEVLVDN-EVAKENVSRFAESRGYEVSV 54 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCCC---------CEEEEEEcC-hhHHHHHHHHHHHcCCEEEE
Confidence 5678999999999999999 54322 223333443 34567899999999999843
No 363
>PHA02669 hypothetical protein; Provisional
Probab=21.81 E-value=2e+02 Score=27.81 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHh
Q 001906 400 TSAMLITFVLFGKYLEILAK-GKTSDAIKKLVE 431 (997)
Q Consensus 400 ~~~~l~~~~~~~~~le~~~~-~k~~~~l~~l~~ 431 (997)
+++.+.+++-+|-..|...| .|.++.+++|..
T Consensus 17 TgAaiYlLiEiGLAaERanKrsRvK~nMRkLat 49 (210)
T PHA02669 17 TGAAIYLLIEIGLAAERANKRSRVKANMRKLAT 49 (210)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56666667777777776554 345566666654
No 364
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=21.81 E-value=6e+02 Score=26.40 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHCCCeEE-EEc------------CCCHHHHHHHHHHcCCceEEeccC---hhh---HHHHHHHHhhcCCE
Q 001906 807 EAAVVVEGLLKMGVRPV-MVT------------GDNWRTAHAVAREIGIQDVMADVM---PAG---KADAVRSFQKDGSI 867 (997)
Q Consensus 807 ~~~~~i~~l~~~gi~~~-i~T------------gd~~~~a~~ia~~~gi~~~~~~~~---p~~---K~~~v~~l~~~g~~ 867 (997)
|..-++..++++|+.+. ++| +.....++.+|+.+|++.....+. +.. -...++.+++.|-.
T Consensus 9 DS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~g~~ 88 (218)
T TIGR03679 9 DSNYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKREGVE 88 (218)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHcCCC
Confidence 34445566666777663 333 345678899999999986665554 222 22345555556877
Q ss_pred EEEEcCCcCC
Q 001906 868 VAMVGDGIND 877 (997)
Q Consensus 868 v~~vGDg~nD 877 (997)
.+..||-.-|
T Consensus 89 ~vv~G~i~sd 98 (218)
T TIGR03679 89 GIVTGAIASR 98 (218)
T ss_pred EEEECCcccH
Confidence 8888886544
No 365
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.75 E-value=1.3e+02 Score=27.92 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=28.9
Q ss_pred CcHhHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHcCCc
Q 001906 804 VKREAAVVVEGLLKMGVR-PVMVTGDNWRTAHAVAREIGIQ 843 (997)
Q Consensus 804 ~~~~~~~~i~~l~~~gi~-~~i~Tgd~~~~a~~ia~~~gi~ 843 (997)
..+.+.+.++++.+.|++ +++.+|.....+...+++.|+.
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 456788999999999987 7888998888888888888874
No 366
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=21.68 E-value=1.4e+03 Score=27.10 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=81.1
Q ss_pred eEEEEecCCCCCCCEEEecCCCcccccEEEEeccee-eeccccCCCCcccccCCCCceecceEEeeeeEEEEEEEecCch
Q 001906 449 EEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDA 527 (997)
Q Consensus 449 ~~~~i~~~~l~~GDii~v~~G~~iPaD~~vl~G~~~-Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t 527 (997)
....+..-+..|-|.+.++- ..-+|--.+.|++. +.-. .|+. ...|..++.|+....=.....-. ...
T Consensus 56 Div~v~~G~~iP~Dg~vl~g--~~~vdes~LTGEs~pv~k~--~g~~----v~~gs~~~~G~~~~~v~~~~~~s---~~~ 124 (499)
T TIGR01494 56 DIVLVKSGEIVPADGVLLSG--SCFVDESNLTGESVPVLKT--AGDA----VFAGTYVFNGTLIVVVSATGPNT---FGG 124 (499)
T ss_pred CEEEECCCCEeeeeEEEEEc--cEEEEcccccCCCCCeeec--cCCc----cccCcEEeccEEEEEEEEecccc---HHH
Confidence 45677888888999988865 45566666677765 3321 1443 35788899998765322111110 111
Q ss_pred HHHHHHHHHHHhhcc-CChhHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHhhcCCCCCCccCCCCccHHHHHHHHh
Q 001906 528 VLSQIISLVETAQMS-KAPIQKFA-DFVASIFVPIVVTLALFTWLCWY----VAGVLGAYPEQWLPENGTHFVFALMFSI 601 (997)
Q Consensus 528 ~~~~i~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (997)
.+..+.+.-.+.+.+ .....+.. ..+..+.+.+.++..++.+..+. +. ..+..++...+
T Consensus 125 ~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~---------------~~~~~~~~vl~ 189 (499)
T TIGR01494 125 KIAVVVYTGFETKTPLQPKLDRLSDIIFILFVLLIALAVFLFWAIGLWDPNSIF---------------KIFLRALILLV 189 (499)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHH---------------HHHHHHHHHHH
Confidence 112222221221122 22233333 34444333333333333222211 11 13566777888
Q ss_pred hhhhhhccccchhhHHHHHHHHHH
Q 001906 602 SVVVIACPCALGLATPTAVMVATG 625 (997)
Q Consensus 602 svlv~~~P~al~la~p~~~~~~~~ 625 (997)
.....+.|.+++++...+.....+
T Consensus 190 ~~~P~aL~~~~~~~~~~~~~~~~~ 213 (499)
T TIGR01494 190 IAIPIALPLAVTIALAVGDARLAK 213 (499)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998877654
No 367
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=21.60 E-value=7.6e+02 Score=27.43 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=51.6
Q ss_pred ecCCCcHhHHHHHHHHHHC---CCeEEEEcCCCHHHHHHHHHHcCCceEEe-------ccChhhHHHHHHHHhhcCCEEE
Q 001906 800 IADPVKREAAVVVEGLLKM---GVRPVMVTGDNWRTAHAVAREIGIQDVMA-------DVMPAGKADAVRSFQKDGSIVA 869 (997)
Q Consensus 800 ~~d~~~~~~~~~i~~l~~~---gi~~~i~Tgd~~~~a~~ia~~~gi~~~~~-------~~~p~~K~~~v~~l~~~g~~v~ 869 (997)
=...+.||..++++..++. |+.+...+.|+...++++++. |-.-+.- .. +-.+...++...+....-+
T Consensus 175 e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~-g~~avmPl~~pIGsg~-gv~~p~~i~~~~e~~~vpV 252 (326)
T PRK11840 175 DAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA-GAVAVMPLGAPIGSGL-GIQNPYTIRLIVEGATVPV 252 (326)
T ss_pred CCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc-CCEEEeeccccccCCC-CCCCHHHHHHHHHcCCCcE
Confidence 3456778999999999888 999988999999999998875 5421111 00 1125566666666655666
Q ss_pred EEcCCcC
Q 001906 870 MVGDGIN 876 (997)
Q Consensus 870 ~vGDg~n 876 (997)
++|-|+-
T Consensus 253 ivdAGIg 259 (326)
T PRK11840 253 LVDAGVG 259 (326)
T ss_pred EEeCCCC
Confidence 6776654
No 368
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.40 E-value=3.9e+02 Score=29.07 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=32.3
Q ss_pred cChhhHHHHHHHHh--hcCCEEEEEcCCcC----CHHHHhc--CCeeEEecCC--cHHHHHhcCEEEec
Q 001906 849 VMPAGKADAVRSFQ--KDGSIVAMVGDGIN----DSPALAA--ADVGMAIGAG--TDIAIEAADYVLMR 907 (997)
Q Consensus 849 ~~p~~K~~~v~~l~--~~g~~v~~vGDg~n----D~~al~~--A~vgia~~~~--~~~~~~~ad~vl~~ 907 (997)
++|..=.++++..+ -.|++|+.+|.|.. =+.+|.. |.|-++-... -......||+++..
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~A 207 (281)
T PRK14183 139 CTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVG 207 (281)
T ss_pred CcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEe
Confidence 34443334444443 24889999999832 1234444 4455444322 23345689998864
No 369
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=21.28 E-value=1.7e+02 Score=25.91 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=38.4
Q ss_pred HHHHHhhhcCCCceeEEee-----cCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 001906 144 NSVEGILRGLPGVKRAVVA-----LATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (997)
Q Consensus 144 ~~ie~~l~~~~GV~~v~v~-----~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~~~~~ 196 (997)
-.+-+.|.+++||..+.+. ..+..+.++-....++.++|.++|++.|=.++-.
T Consensus 20 ~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSI 77 (95)
T PF02680_consen 20 VELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSI 77 (95)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEee
Confidence 3466778899999876654 4666677766666689999999999999877643
No 370
>PRK08508 biotin synthase; Provisional
Probab=21.12 E-value=8.6e+02 Score=26.34 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCC--CeEEEEcCCCHHHHHHHHHHcCCceEEe
Q 001906 770 HVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMG--VRPVMVTGDNWRTAHAVAREIGIQDVMA 847 (997)
Q Consensus 770 ~~~~~~~~~~~~g~~~i~va~~~~~lG~i~~~d~~~~~~~~~i~~l~~~g--i~~~i~Tgd~~~~a~~ia~~~gi~~~~~ 847 (997)
++.+...+..+.|.+.+.+...+. .+.++.-+...++++.+|+.+ +.++...|..........++.|++.+..
T Consensus 44 eI~~~a~~a~~~g~~~~~lv~sg~-----~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 44 QIVQEAKMAKANGALGFCLVTSGR-----GLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----CCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcc
Confidence 333444444455665554432222 123444467788888898875 4555567877777777777888874332
Q ss_pred ----------c----cChhhHHHHHHHHhhcCCEE---EEEcCCcCC
Q 001906 848 ----------D----VMPAGKADAVRSFQKDGSIV---AMVGDGIND 877 (997)
Q Consensus 848 ----------~----~~p~~K~~~v~~l~~~g~~v---~~vGDg~nD 877 (997)
+ -+++++.+.++..++.|-.+ +++|=|.++
T Consensus 119 ~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ 165 (279)
T PRK08508 119 NLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESW 165 (279)
T ss_pred cccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCH
Confidence 2 23567778888888877543 566665443
No 371
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=21.00 E-value=4.6e+02 Score=26.71 Aligned_cols=65 Identities=14% Similarity=0.262 Sum_probs=45.0
Q ss_pred cHhHHHHHHHHHHCCCeEEEEcCCCH-----HHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcCCEEEEE
Q 001906 805 KREAAVVVEGLLKMGVRPVMVTGDNW-----RTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMV 871 (997)
Q Consensus 805 ~~~~~~~i~~l~~~gi~~~i~Tgd~~-----~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~v 871 (997)
..+..+.++++++.|+. .+++||+. .....+++++|+..++ .+=-.+..++++.+-..|-++..+
T Consensus 74 ~~~l~~~l~~~~~~g~~-~vv~G~i~sd~~~~~~e~~~~~~gl~~~~-PLW~~~~~~ll~e~~~~g~~~~iv 143 (194)
T cd01994 74 VEDLKELLRKLKEEGVD-AVVFGAILSEYQRTRVERVCERLGLEPLA-PLWGRDQEELLREMIEAGFKAIII 143 (194)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECccccHHHHHHHHHHHHHcCCEEEe-cccCCCHHHHHHHHHHcCCeEEEE
Confidence 36667778887777765 68889875 5677899999996433 222234456888888888765553
No 372
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=20.69 E-value=1.4e+02 Score=32.35 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=39.6
Q ss_pred chhhHHHHHHhhcCCCCeeEEEEEeecc-------------------EEEEEECCCCcchHHHHHHHH
Q 001906 57 CAACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNAIE 105 (997)
Q Consensus 57 C~~C~~~ie~~l~~~~gv~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~ 105 (997)
-++|=|.+|..+.+++||.++.+-+..+ .+.|.||+..++.+++.+..=
T Consensus 133 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~ 200 (283)
T PRK05550 133 AGGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFF 200 (283)
T ss_pred ecCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 3689999999999999999999865444 377888988888888777653
No 373
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.49 E-value=3.6e+02 Score=29.46 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=32.8
Q ss_pred ccChhhHHHHHHHHh--hcCCEEEEEcCCcC----CHHHHhcCC--eeEEecCCc--HHHHHhcCEEEe
Q 001906 848 DVMPAGKADAVRSFQ--KDGSIVAMVGDGIN----DSPALAAAD--VGMAIGAGT--DIAIEAADYVLM 906 (997)
Q Consensus 848 ~~~p~~K~~~v~~l~--~~g~~v~~vGDg~n----D~~al~~A~--vgia~~~~~--~~~~~~ad~vl~ 906 (997)
.++|..=.++++.+. -.|++|+.+|-|.. =+.+|...+ |.++-.... ......||+++.
T Consensus 145 PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 145 PCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVV 213 (287)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEE
Confidence 344544445555543 25899999999852 123444444 444443222 334467999885
No 374
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=20.24 E-value=1.1e+03 Score=25.56 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=73.3
Q ss_pred EEEEEecCCCcHhHHHHHHHHHHCC--Ce------EEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhcCC
Q 001906 795 IGVMGIADPVKREAAVVVEGLLKMG--VR------PVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGS 866 (997)
Q Consensus 795 lG~i~~~d~~~~~~~~~i~~l~~~g--i~------~~i~Tgd~~~~a~~ia~~~gi~~~~~~~~p~~K~~~v~~l~~~g~ 866 (997)
++++.=.-...++..+.++.|++.. .. +.-.|-+.+..++.+|+++.+.-+.+.-....=.++.+-.++.|.
T Consensus 156 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~ 235 (280)
T TIGR00216 156 LGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGP 235 (280)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCC
Confidence 6677766677788899999998876 22 345788999999999999888777776655555567777777787
Q ss_pred EEEEEcCC-cCCHHHHhcCC-eeEEecCCc
Q 001906 867 IVAMVGDG-INDSPALAAAD-VGMAIGAGT 894 (997)
Q Consensus 867 ~v~~vGDg-~nD~~al~~A~-vgia~~~~~ 894 (997)
.+..|.+- .-|...|+..+ |||.-|.++
T Consensus 236 ~t~~Ie~~~el~~~~l~~~~~VGiTAGAST 265 (280)
T TIGR00216 236 PSYLIETAEELPEEWLKGVKVVGITAGAST 265 (280)
T ss_pred CEEEECChHHCCHHHhCCCCEEEEEecCCC
Confidence 78887764 23556777655 788888443
No 375
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=20.20 E-value=1.1e+03 Score=28.45 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=55.6
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCC-HHHHHHHHHHcCCc-eEEeccChhhHHHHHHHHhhcCCEEEEEcCCcCCHHHHhc
Q 001906 806 REAAVVVEGLLKMGVRPVMVTGDN-WRTAHAVAREIGIQ-DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAA 883 (997)
Q Consensus 806 ~~~~~~i~~l~~~gi~~~i~Tgd~-~~~a~~ia~~~gi~-~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~ 883 (997)
-|..+++...++.+-++.+++=.+ ...+..+++-++++ ..+.-.++++-...++.++++|.. +.|||+.- +.+.+.
T Consensus 84 ~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~-~viG~~~~-~~~A~~ 161 (526)
T TIGR02329 84 FDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIG-AVVGAGLI-TDLAEQ 161 (526)
T ss_pred hhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCC-EEECChHH-HHHHHH
Confidence 457777888888777777775543 45688888889887 445555777888899999999975 56798844 333344
Q ss_pred CCe
Q 001906 884 ADV 886 (997)
Q Consensus 884 A~v 886 (997)
+|+
T Consensus 162 ~gl 164 (526)
T TIGR02329 162 AGL 164 (526)
T ss_pred cCC
Confidence 443
No 376
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=20.04 E-value=7.5e+02 Score=25.91 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=22.2
Q ss_pred HHHHHhhcCCEE-EEEcCCc-CCHHHHhcCCee
Q 001906 857 AVRSFQKDGSIV-AMVGDGI-NDSPALAAADVG 887 (997)
Q Consensus 857 ~v~~l~~~g~~v-~~vGDg~-nD~~al~~A~vg 887 (997)
+++.+......+ +||||.. +|+.+.+++++-
T Consensus 197 ~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~ 229 (236)
T TIGR01460 197 ALNLLQARPERRDVMVGDNLRTDILGAKNAGFD 229 (236)
T ss_pred HHHHhCCCCccceEEECCCcHHHHHHHHHCCCc
Confidence 344444333444 9999998 899999999854
No 377
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.01 E-value=6e+02 Score=27.08 Aligned_cols=38 Identities=16% Similarity=0.011 Sum_probs=20.9
Q ss_pred HHHHHHHHCCCeEEEEcC-CCHHHHHHHHHHcCCceEEe
Q 001906 810 VVVEGLLKMGVRPVMVTG-DNWRTAHAVAREIGIQDVMA 847 (997)
Q Consensus 810 ~~i~~l~~~gi~~~i~Tg-d~~~~a~~ia~~~gi~~~~~ 847 (997)
+.++.+.+.++.=+++++ +........+++.|+.-++.
T Consensus 47 ~~~~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~ 85 (283)
T cd06279 47 SDSALVVSALVDGFIVYGVPRDDPLVAALLRRGLPVVVV 85 (283)
T ss_pred HHHHHHHhcCCCEEEEeCCCCChHHHHHHHHcCCCEEEE
Confidence 466667777777555544 22223444456677654433
Done!