BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001909
         (997 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9NIV0|RHGA_DICDI Rhesus-like glycoprotein A OS=Dictyostelium discoideum GN=rhgA PE=1
           SV=1
          Length = 527

 Score = 33.9 bits (76), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 508 SVLGTLLRKFLAYPSAYDGGISSLSFLADELSLSG--CVVPYAIPKAHMQSTCVTVRLHV 565
           S+ G +++  +A+ +   GG  ++ F+A  +S+ G   + P    K H+Q TC  + LH 
Sbjct: 304 SLAGGVVQGCIAHMNINPGGAIAMGFIAGTISVCGYLFITPKVQRKLHIQDTCGILNLHC 363

Query: 566 LS--LGSLFGRYWP----QSCGCHQEVEQSSDFNAQTIEASGHL 603
           +   LGS+   +       +   + +VE    F A   +AS +L
Sbjct: 364 IPGFLGSIAAIFAAIKGLNNPNMYSKVEFEQIFRAGDSQASANL 407


>sp|Q22670|RBGPR_CAEEL Rab3 GTPase-activating protein regulatory subunit OS=Caenorhabditis
           elegans GN=rbg-2 PE=3 SV=1
          Length = 1307

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 12/153 (7%)

Query: 636 VRLIQKKIKEEMNLERGMDCQFQVKVEYSPKDARWLKNSEVKISISSKRSKEDPLYFNPV 695
           V L Q  +K++ N+ R  D   ++        A+W+ ++ +      K    DP     +
Sbjct: 828 VSLAQSLLKDDSNILRISDVVPRIDSYIRENVAKWIVSTPIDTDTIEKLFPRDP--SENL 885

Query: 696 SLKANQIHYDKQL-------TNMVLRKTFEDILRVLL--LIIAIVCTGSQLQYINHCIDP 746
           + K N+    KQ+         +V+++ ++ I RV    L++A VC     Q+     D 
Sbjct: 886 AEKGNEEDRRKQMIIDFPDDKEVVIQRMYQIIPRVFEHDLVVADVCWEMMSQWFREKDDN 945

Query: 747 FSYISLVMIYIPAVDYISPLISNGEIFFKWKSF 779
           FSYI      +P    + P + +G     W  F
Sbjct: 946 FSYIKDCTTLLPQ-SIVDPRLRHGIARLIWDKF 977


>sp|P41049|EFH52_TRYCR EF-hand protein 5 variant 2 OS=Trypanosoma cruzi PE=4 SV=1
          Length = 208

 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 611 NNISMSFEGIYDLTAG-KMYLVGCRDVRLIQKKIKEEMNLERGMDCQFQVKVEYSPKDAR 669
           N IS   EG Y L+ G K   +  +DV  + + +   +  E   D   +V  +  P++A 
Sbjct: 59  NIISEMAEGFYVLSGGYKKLFIPSKDVYALMQNVGMHLTEEEFHDA-LRVIGQSEPQNAD 117

Query: 670 WLKNSEVKISISSKRSKEDPLYFNPVSLKANQIHYDKQLTNMVLRKTFEDILRVL 724
            L  S+  + ++  R  +D +      L++   HYDK  T  V RK F ++   L
Sbjct: 118 ELSFSDFLLLMT--REVDDTM---ADELRSAFFHYDKHKTGYVTRKQFTELFATL 167


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,374,784
Number of Sequences: 539616
Number of extensions: 16388802
Number of successful extensions: 32453
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 32450
Number of HSP's gapped (non-prelim): 7
length of query: 997
length of database: 191,569,459
effective HSP length: 127
effective length of query: 870
effective length of database: 123,038,227
effective search space: 107043257490
effective search space used: 107043257490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)