Query 001909
Match_columns 997
No_of_seqs 111 out of 120
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 12:08:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11145 DUF2921: Protein of u 100.0 1E-234 3E-239 2081.5 70.9 874 38-995 2-909 (909)
2 PF11145 DUF2921: Protein of u 100.0 3E-31 6.6E-36 321.8 20.4 271 151-469 312-610 (909)
3 KOG0828 Predicted E3 ubiquitin 99.8 1.7E-19 3.6E-24 202.4 6.6 287 648-994 226-545 (636)
4 PF06191 DUF995: Protein of un 26.9 47 0.001 34.3 2.5 24 396-419 66-90 (145)
5 TIGR00951 2A43 Lysosomal Cysti 13.9 1.1E+02 0.0024 33.4 1.9 80 903-990 19-99 (220)
6 PF03839 Sec62: Translocation 13.7 2.3E+02 0.005 31.4 4.3 40 720-760 113-152 (224)
7 PF08693 SKG6: Transmembrane a 13.3 93 0.002 25.7 0.9 19 967-985 14-32 (40)
8 smart00679 CTNS Repeated motif 12.3 93 0.002 23.2 0.6 24 903-927 3-26 (32)
9 COG4037 Predicted membrane pro 10.7 1.8E+02 0.0038 29.9 2.1 40 738-777 11-51 (163)
10 KOG4558 Uncharacterized conser 10.0 1.6E+02 0.0035 32.2 1.6 24 429-455 94-117 (251)
No 1
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=100.00 E-value=1.2e-234 Score=2081.53 Aligned_cols=874 Identities=36% Similarity=0.559 Sum_probs=773.6
Q ss_pred HhhccCCCCCCCCCCCCC-CccccccccceeccccceecCCCCCCCCCCCCcCCCCCCCCCcccceeEEEEecCCccccc
Q 001909 38 QEKCGSVLSSASELKPDD-NRSSRIKEELSFVNGDWEQDSGGAPLMPFDDKEMHRSPAGPGSFLKLASFWVVDVDPVRRT 116 (997)
Q Consensus 38 ~~~C~s~lssa~el~~d~-~~~~~l~~~l~f~~Gdw~q~~G~~pL~p~d~~~~~~s~s~~~~~l~lasf~~tdvd~~~r~ 116 (997)
|+||+|++++|+|+++++ +.+...+.+|+|.+|||+| +||+||||+|+++.++. ++++|||+|||+..+|.
T Consensus 2 ~~hC~svvp~a~~l~~~~~~~~~~~s~~L~~~~ggyfq-~GGd~Lfp~d~s~~~~~-------~r~~SF~~~~V~~T~~~ 73 (909)
T PF11145_consen 2 KRHCASVVPSASELKDDDDTRSLLISFELSFFNGGYFQ-AGGDPLFPFDDSDSPSS-------LRSFSFWPTHVDRTTRP 73 (909)
T ss_pred cccccCCCCCccccccccCcccccccccccCCCCCeec-CCCCCCCCCCccccccc-------cceEEEEeeeeccccCC
Confidence 689999999999998766 6777889999999999999 89999999999887642 89999999999999999
Q ss_pred cceEEeEEEEEEEEeccCCCCCCCC-----CCCCcccCCCcceEEEEEEEEEeeecCCCceeeEEEEeeccCCCCCCCCC
Q 001909 117 RNMVSLSGIMEIGVTARQPFSYRPG-----WSPKFRKDPGLSSMTILFEGVYIESEENGGEWLICLLGTSMMPRTNQFLP 191 (997)
Q Consensus 117 ~~~v~vsg~L~l~isr~~~~~~~~~-----~~p~f~~~pg~s~ltf~lEG~Yses~~~~ge~~LCMVG~~~l~~~~d~~~ 191 (997)
++++||+|+|+|+|+|+++.++... .+|+|..|||+++|||.|||+|+|+ |++|||||+|+..
T Consensus 74 ~~vv~Vsg~LtL~isr~~~~~~~~~~~~~~~~~~~~~~pg~ssLsf~LeG~YSe~-----sg~LCMVGsgs~~------- 141 (909)
T PF11145_consen 74 GKVVKVSGTLTLSISRNSARSSYYYYDHRRRSPEFYRWPGRSSLSFSLEGFYSEG-----SGVLCMVGSGSGY------- 141 (909)
T ss_pred CcEEEEEEEEEEEeecCCCCccccccccccCCcceecCCCceEEEEEEEEEEEcC-----CCcEEEecccccc-------
Confidence 9999999999999999988765221 2799999999999999999999995 8889999999755
Q ss_pred chhhhhcccccCCCCCCCCccccccEEEEEecCCccccccccEEEEEEecCCCCCCCCcceEEEeeecCCCCccccCccc
Q 001909 192 SWELADMYGYKFGEHHQPPLIQDDQIMLVLRYNRTFSLTTGNITGEMKSLHEKSDFKYFDGVHLSSHLGLHSKYQFGAEE 271 (997)
Q Consensus 192 pw~~ak~~g~~~~~~~~pp~~~D~~i~L~LRyP~~~SLtsr~V~G~L~S~~~~~d~~YFd~Vslls~~g~~~~YeY~~~~ 271 (997)
..++||+..|++|+|+||||+++|||+|+|+|+|||+|+++|++|||+|+|++|++.+++|+| +
T Consensus 142 -------------s~~g~~v~~~~~~vL~LryPk~~sLtsr~V~G~LeS~n~~~d~~YFd~VsLls~~~~~~~Y~Y---~ 205 (909)
T PF11145_consen 142 -------------SNDGPPVKLDDNAVLVLRYPKPSSLTSRFVTGELESLNSKSDSAYFDPVSLLSQLEGYSNYEY---T 205 (909)
T ss_pred -------------CCCCCceeeecceEEEEcCCCcccccccceeEEEEecCCCCCccccceeEEEecCCCccCceE---E
Confidence 233588999999999999999999999999999999999999999999999999988799999 6
Q ss_pred cccccCCCCCCccchhhh---hhhhcCCcccccccccccccCceeeecCCCCCCCCCCCCCCCCceecCCcccCCCCCCc
Q 001909 272 LLSKACSPYPYQDSLVDE---EVILFKDDNICDTLHRYVSRGMFDIMPSWKSVGSNDDANKLGPFILNGTAKDMDSGSNY 348 (997)
Q Consensus 272 ~v~k~C~~~~~~d~~~~~---g~~~y~~~~~C~~l~~~~~~~~f~v~~~w~C~~t~~~cs~lgPf~~~~~~~~~~~~~p~ 348 (997)
+++++|+++++.+.+..+ +..+|.++++|++|++.+.+ +|+++|+|+||++++.|+++|||.. .+
T Consensus 206 lv~~sc~~~~~~d~~~~~~~~~~~~~~~~~~C~~L~~~~~~-~f~l~y~~~C~st~~~~~~~gp~~~-----------~~ 273 (909)
T PF11145_consen 206 LVSKSCDPPPYGDGDVGDGSSLSDVYSGNFFCSILRRFLRG-SFKLEYNWDCNSTDACCSFGGPFGL-----------LP 273 (909)
T ss_pred EccccCCCCcccccccccccccccccCCCCCChhhHhcCCC-ceEeEECCCCCCcccccCCCCCccc-----------CC
Confidence 678899998876533222 34569999999999998755 7999999999999999999999964 35
Q ss_pred eeeEEeeeeecCCCCCCCCCceEEEEEEEeccCCCcccccccccCCCCceEEEeeeeecCCCcEEEeecccc-c-----c
Q 001909 349 FRLNVQNLRCSQGIDENNSNYARVFALFRVIQSWEGEYTSADRTGLSGLTLSAEGIWRSSEGQLCMVGCLGV-V-----E 422 (997)
Q Consensus 349 ~~m~~~~i~C~~~~~~~~~~avrv~avFr~~~~~~~~~~a~~r~~~~~~~l~AEG~wd~~tg~LCmvgCr~~-v-----~ 422 (997)
++|+||++||+++ +++||+|+|||++|+++.+.+..|++++++||+|||+||+|+|||||||||.. + +
T Consensus 274 ~~m~~~~v~C~~~------g~vrv~~vF~~~~~~e~~~~~~~r~gl~~~tLvAEG~Wd~s~gqLCmvaCrv~~~~~s~~~ 347 (909)
T PF11145_consen 274 VRMHMQQVRCEED------GAVRVSAVFRNVSPSEHYYPARPRTGLSNMTLVAEGVWDSSSGQLCMVACRVGNSDDSLAN 347 (909)
T ss_pred ceEEEEeeEecCC------CcEEEEEEEcCCCchhhcccccccccccCceEEEEeeEcCCCCcEEEEeeeeccccccccc
Confidence 5699999999997 77999999999999999999999999999999999999999999999999853 1 2
Q ss_pred ccccCcceeEEEEccceeeeeccceEEEEEEeCCCCCCCCCcccccCCCCCCCCCCccccCCC---CcceeeechhhHHH
Q 001909 423 TSSQRCNSRICLHFPLTFSITQGTTVFGTITSISDTDSQTPLWFEKKTPPDHITSPKYLKDLG---KKWSYKYSKIMQAK 499 (997)
Q Consensus 423 s~~~dC~i~vsl~FPa~~si~~rs~i~G~I~S~r~~~~~~pl~F~~~v~p~~l~~~~~~~~~g---s~l~Y~YT~ve~A~ 499 (997)
++++||+||||||||++|||||||+|+|+|||++.++.++|++|+++++|+++|+ .++..+ +++||+|||+|+|+
T Consensus 348 ~~v~dC~ir~sl~FPav~SIr~RS~v~G~I~s~~~~~~~~~~~f~~i~~~s~~~~--~~~~~~~~l~~lkY~YTkvd~A~ 425 (909)
T PF11145_consen 348 AGVGDCSIRMSLWFPAVWSIRQRSIVVGQIWSNSQGSSNDPLYFSRIVSPSELFN--SFGNSSSNLSGLKYNYTKVDEAK 425 (909)
T ss_pred cccCCCCceEEEEecCeEEEeecceEEEEEecCCccccCCCcchhheeeeccccc--cccccccCccCceeeeeeHHHHH
Confidence 5679999999999999999999999999999999966779999999999999884 443322 46799999999999
Q ss_pred hhhccCCCCchhhhhhh-ccCCCCCCCCCcccccccccceeeeEeeeccCCCCCCcccceeEEeeeeeecccccccccCC
Q 001909 500 AFQTGSKPSVLGTLLRK-FLAYPSAYDGGISSLSFLADELSLSGCVVPYAIPKAHMQSTCVTVRLHVLSLGSLFGRYWPQ 578 (997)
Q Consensus 500 k~~~r~k~~~~~~~~kk-~~~yP~~~s~~~~S~~~l~~dl~~~~~a~p~~~~~~~~~~~~vt~~~evlslG~l~g~~~~~ 578 (997)
|+|+|+|++++ +|+ +++||++.+ .+|++++..|++++..+.|+ +++++ + ++++||++|+++++.
T Consensus 426 k~~~~~~~~~~---kks~~~~yP~~~~--~~s~sDl~fdl~v~~s~~~~-~~~g~-a--------~plslG~~~~~~~~~ 490 (909)
T PF11145_consen 426 KHCRRNEPSKF---KKSLGLSYPDNLG--NYSSSDLRFDLSVRNSAGPD-LPSGY-A--------SPLSLGSLFGRGDPL 490 (909)
T ss_pred HHHHhcCCccc---ccccCCCCCCccc--cccHhhhcccEEEecccccc-CCCCC-c--------ceEEECchhcccCcc
Confidence 99999999975 333 699998843 35899999999999988887 55666 2 457799999987654
Q ss_pred CCCccccc------cc--ccccccceEEEEEEEEEeccccccee-eeeeeeeeCCCceEEEEeccccchhhhhhhhhccc
Q 001909 579 SCGCHQEV------EQ--SSDFNAQTIEASGHLNIFGEHFNNIS-MSFEGIYDLTAGKMYLVGCRDVRLIQKKIKEEMNL 649 (997)
Q Consensus 579 ~~~~~~~~------~~--~~~~~~~llNVSy~i~~~~~~~~~~s-isaEGvYD~~tG~lcmVGCR~v~~~~~~~~~~~~~ 649 (997)
........ .. .+..+++||||||+|+|+++.+.+.+ |||||||||+||+|||||||+++++|+++.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~llNVSy~i~~~~~~~~~~~~isaEGvYD~~~G~lclVGCR~v~~~~~~~~~---- 566 (909)
T PF11145_consen 491 SADDSFSRHAASPSSPEVTEMQHSRLLNVSYEISLSGSISSNSSQISAEGVYDPKTGRLCLVGCRDVRLNWNISSN---- 566 (909)
T ss_pred ccCcccccccccccccccccccccceeEEEEEEEEcccccceEEEEEEEeeeeCCCCeEEEEeccccccCcccccc----
Confidence 43222111 11 13333579999999999999876655 5999999999999999999999999988765
Q ss_pred ccCCceeEEEEEEecCcccccccCceeEEEEeecCCCCCCCCcccccccccceehhhhhhhhhhhhhHHHHHHHHHHHHH
Q 001909 650 ERGMDCQFQVKVEYSPKDARWLKNSEVKISISSKRSKEDPLYFNPVSLKANQIHYDKQLTNMVLRKTFEDILRVLLLIIA 729 (997)
Q Consensus 650 e~~~DC~I~V~vq~pp~~~~~~~~~~~kg~I~S~R~k~DpL~F~~l~l~~~~~~y~~q~~~~i~R~d~E~il~~v~ls~t 729 (997)
|++|||+|+|+|||||+|++ +++|+||+|+|+|+|+|||||+|++|++++++|++|++|+|||||||+||++++++.+
T Consensus 567 ~~~~DC~I~V~vq~pp~~~~--~~~~~kg~I~S~R~~~DpL~F~~~~l~~~~~~~~~q~~~~i~R~d~E~i~~~~s~tl~ 644 (909)
T PF11145_consen 567 ESSMDCEILVTVQFPPLDAK--VNPTIKGSISSTRDKSDPLYFEPLDLSTYPIYYRKQAEESIWRMDLEGIMRVISLTLS 644 (909)
T ss_pred CCCCCeeEEEEEEcCCCCCC--CCCcEEEEEEeccCCCCCccccceeeeeccceeccccchhhhhhhHHHHHHHHHHHHH
Confidence 89999999999999999999 5899999999999999999999999999999998899999999999999775555555
Q ss_pred HHHHhhhhhhhccCCCCcchhHHHHHHHhhhhcccccccccccccccccccccCCceeeeccccccccchhhHHHHHHHH
Q 001909 730 IVCTGSQLQYINHCIDPFSYISLVMIYIPAVDYISPLISNGEIFFKWKSFHAHRNQSYEMMNYDRFRFLGYVIKVLSLYA 809 (997)
Q Consensus 730 l~cv~~QL~h~kk~~~~~P~iSlvML~v~aLGy~~PLvln~EaLF~~~~~~~~~~~~~~l~~~~~le~ne~~vR~ltmvA 809 (997)
++|+++||+|+|||||++|+||||||+|||||||+|||+||||||+.+ +++|++.+++++|+|+||++||++||||
T Consensus 645 ~~~~~~QL~~~k~~~~~~P~iSlvML~v~aLGy~~pLv~n~EaLf~~~----~~~~~~~~~~~~w~e~~e~~vr~ltmvA 720 (909)
T PF11145_consen 645 CVFIGLQLFHVKKHPDVLPYISLVMLGVQALGYMIPLVLNFEALFKSS----HNRQNIFLDSGGWLEVNEVMVRLLTMVA 720 (909)
T ss_pred HHHHHHHHhhhhcCCCccchHhHHHHHHHHHhccchhhcCHHHHcCcC----CCCceEEeecCchhHHHHHHHHHHHHHH
Confidence 555569999999999999999999999999999999999999999955 6789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccCCCCCCccccCCceEEEeehHHHHHhHhheeeeeeccccccCCC-CCccccc-cchhhhH
Q 001909 810 LWLTSNLGKKVSATRVRQMGHGLKQQSRLPNEKKIVLITCAVHVFGFLVTHVIREMNAVETVPA-PDKFVNE-RSKLLEW 887 (997)
Q Consensus 810 flL~lRLlqlvw~aR~~~~~~~~~~~~~~~~ek~vl~~~l~ly~~G~li~l~~h~~~~~~~~~~-~~~~~~~-~~~~~~W 887 (997)
|||||||+|||||||++++++++.+++ |+||||||+|||+|++|+||+|++|..++...+.. +.++... .|+++.|
T Consensus 721 flL~lRL~qlvw~aR~~~~~~~~~~~~--~sek~vl~~~l~ly~~G~li~l~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (909)
T PF11145_consen 721 FLLQLRLLQLVWSARIRDGARKPLEPW--PSEKKVLYICLPLYIAGGLIALIVHASKTNSRRARREESYDSRISHQQHSW 798 (909)
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCC--CccceEEEEEeHHHHHHHHHhhhhhhhcccccccccccccccccccccccH
Confidence 999999999999999999988777655 99999999999999999999999999987443333 3333333 3665665
Q ss_pred HHHhhhcccccccccchhHhHHhhhcCCCCCcCccceeechhhhhhcccceeeecCcccccccc--CCcccccCCCCCcc
Q 001909 888 LKELDAYLLLVPDFFLLPQIVGNVLWGNKGKPLRKFYYMGLTCLRFLLHIYDYVRDPVLLENYY--GGFDRQKKSLDLNS 965 (997)
Q Consensus 888 ~~dL~sY~GLvlD~FLLPQIi~N~~~~s~~kpLs~~fYvG~T~vRllpH~YD~~r~~~~~~~~~--~s~~ya~~~~Dfys 965 (997)
.+||++|+|||||||||||||+|+||++|||||+++||+|+|++|||||+||++|+|.++ ||| ++|+||||++||||
T Consensus 799 ~~~l~~y~GLv~D~FLLPQii~N~~~~~~~~~Ls~~fY~G~T~~Rllph~Yd~~r~~~~~-~~~~~~~~~ya~~~~dfys 877 (909)
T PF11145_consen 799 WEDLKSYAGLVLDGFLLPQIIGNAFWQSKVKPLSKSFYVGTTLVRLLPHVYDLYRAPNYV-PYFDDESYVYANPRMDFYS 877 (909)
T ss_pred HHHHHHhhhHHHhhhhHHHHHHHHHhccCCcccccceeehHHHHHHHHHHHhhccccccC-cccccccccccCccccccc
Confidence 569999999999999999999999999999999999999999999999999999999999 999 79999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcCc--ccCC
Q 001909 966 KFGNIAVAVIAILLAMTVYKQQKKIK--ILPL 995 (997)
Q Consensus 966 ~awDi~Ip~~a~llA~~v~lQQr~g~--~~~~ 995 (997)
+||||+|||+|+|||++||+|||||+ ++|.
T Consensus 878 ~awDi~Ip~~a~llA~~v~~QQr~~~~~~~~~ 909 (909)
T PF11145_consen 878 TAWDIVIPCGAVLLAALVYLQQRWGGRCILPM 909 (909)
T ss_pred cccceeeehHHHHHHHHHHHHhhhCCeeeccC
Confidence 99999999999999999999999999 6663
No 2
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=99.97 E-value=3e-31 Score=321.76 Aligned_cols=271 Identities=24% Similarity=0.311 Sum_probs=192.3
Q ss_pred CcceEEEEEEEEEeeecCCCceeeEEEEeeccCCCCCCCCCchhhhhcccccCCCCCCCCccccccEEEEEecCCccccc
Q 001909 151 GLSSMTILFEGVYIESEENGGEWLICLLGTSMMPRTNQFLPSWELADMYGYKFGEHHQPPLIQDDQIMLVLRYNRTFSLT 230 (997)
Q Consensus 151 g~s~ltf~lEG~Yses~~~~ge~~LCMVG~~~l~~~~d~~~pw~~ak~~g~~~~~~~~pp~~~D~~i~L~LRyP~~~SLt 230 (997)
|.+++|++.||+|+++ +++||||||+++.. .++ .+ .+.++||+|++.||||.+|||+
T Consensus 312 gl~~~tLvAEG~Wd~s-----~gqLCmvaCrv~~~-~~s-----~~------------~~~v~dC~ir~sl~FPav~SIr 368 (909)
T PF11145_consen 312 GLSNMTLVAEGVWDSS-----SGQLCMVACRVGNS-DDS-----LA------------NAGVGDCSIRMSLWFPAVWSIR 368 (909)
T ss_pred cccCceEEEEeeEcCC-----CCcEEEEeeeeccc-ccc-----cc------------ccccCCCCceEEEEecCeEEEe
Confidence 4469999999999998 88899999999883 444 33 3578999999999999999999
Q ss_pred cc-cEEEEEEecCC--CCCCCCcceEE-----EeeecC-----CCCccccCccccccccCCCCCCccchhhhhhhhcCCc
Q 001909 231 TG-NITGEMKSLHE--KSDFKYFDGVH-----LSSHLG-----LHSKYQFGAEELLSKACSPYPYQDSLVDEEVILFKDD 297 (997)
Q Consensus 231 sr-~V~G~L~S~~~--~~d~~YFd~Vs-----lls~~g-----~~~~YeY~~~~~v~k~C~~~~~~d~~~~~g~~~y~~~ 297 (997)
+| .|.|+|||++. .+++.||+.|. +..... .+.+|+||+.++++|.|......+. +++-...||++
T Consensus 369 ~RS~v~G~I~s~~~~~~~~~~~f~~i~~~s~~~~~~~~~~~~l~~lkY~YTkvd~A~k~~~~~~~~~~-kks~~~~yP~~ 447 (909)
T PF11145_consen 369 QRSIVVGQIWSNSQGSSNDPLYFSRIVSPSELFNSFGNSSSNLSGLKYNYTKVDEAKKHCRRNEPSKF-KKSLGLSYPDN 447 (909)
T ss_pred ecceEEEEEecCCccccCCCcchhheeeeccccccccccccCccCceeeeeeHHHHHHHHHhcCCccc-ccccCCCCCCc
Confidence 99 79999999998 89999999998 333211 2368999999999999987665443 11101369987
Q ss_pred ----cccc-ccccccccCceeeecCCCCCCCCCCCCCCCCceecCCcccCCCCCCceeeEEeeee--ecCCCCCCC-CCc
Q 001909 298 ----NICD-TLHRYVSRGMFDIMPSWKSVGSNDDANKLGPFILNGTAKDMDSGSNYFRLNVQNLR--CSQGIDENN-SNY 369 (997)
Q Consensus 298 ----~~C~-~l~~~~~~~~f~v~~~w~C~~t~~~cs~lgPf~~~~~~~~~~~~~p~~~m~~~~i~--C~~~~~~~~-~~a 369 (997)
+.-| .|++.++.+.. |+...++.+ |+.+|+.+..-+.....- ...+... =.+...+.+ +..
T Consensus 448 ~~~~s~sDl~fdl~v~~s~~-------~~~~~g~a~---plslG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 516 (909)
T PF11145_consen 448 LGNYSSSDLRFDLSVRNSAG-------PDLPSGYAS---PLSLGSLFGRGDPLSADD-SFSRHAASPSSPEVTEMQHSRL 516 (909)
T ss_pred cccccHhhhcccEEEecccc-------ccCCCCCcc---eEEECchhcccCccccCc-ccccccccccccccccccccce
Confidence 6666 47887665422 111225666 788887663111000000 0000000 000001112 245
Q ss_pred eEEEEEEEeccCCCcccccccccCCCCceEEEeeeeecCCCcEEEeeccccc-------cccccCcceeEEEEccceeee
Q 001909 370 ARVFALFRVIQSWEGEYTSADRTGLSGLTLSAEGIWRSSEGQLCMVGCLGVV-------ETSSQRCNSRICLHFPLTFSI 442 (997)
Q Consensus 370 vrv~avFr~~~~~~~~~~a~~r~~~~~~~l~AEG~wd~~tg~LCmvgCr~~v-------~s~~~dC~i~vsl~FPa~~si 442 (997)
+||+...+-.-. .......|+|||+||++||+|||||||.+. +.++.||+|.|++|||+. +.
T Consensus 517 lNVSy~i~~~~~----------~~~~~~~isaEGvYD~~~G~lclVGCR~v~~~~~~~~~~~~~DC~I~V~vq~pp~-~~ 585 (909)
T PF11145_consen 517 LNVSYEISLSGS----------ISSNSSQISAEGVYDPKTGRLCLVGCRDVRLNWNISSNESSMDCEILVTVQFPPL-DA 585 (909)
T ss_pred eEEEEEEEEccc----------ccceEEEEEEEeeeeCCCCeEEEEeccccccCccccccCCCCCeeEEEEEEcCCC-CC
Confidence 788666655311 122578999999999999999999999751 125789999999999887 57
Q ss_pred eccceEEEEEEeCCCCCCCCCcccccC
Q 001909 443 TQGTTVFGTITSISDTDSQTPLWFEKK 469 (997)
Q Consensus 443 ~~rs~i~G~I~S~r~~~~~~pl~F~~~ 469 (997)
+..++++|+|+|+|+++ |||+|+..
T Consensus 586 ~~~~~~kg~I~S~R~~~--DpL~F~~~ 610 (909)
T PF11145_consen 586 KVNPTIKGSISSTRDKS--DPLYFEPL 610 (909)
T ss_pred CCCCcEEEEEEeccCCC--CCccccce
Confidence 79999999999999999 99999996
No 3
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.7e-19 Score=202.41 Aligned_cols=287 Identities=15% Similarity=0.182 Sum_probs=202.5
Q ss_pred ccccCCceeEEEEEEecCcccccc-------cCceeEEEEeecCCCCCCCCcccccccccceehhhhhhhhhhhhhHHHH
Q 001909 648 NLERGMDCQFQVKVEYSPKDARWL-------KNSEVKISISSKRSKEDPLYFNPVSLKANQIHYDKQLTNMVLRKTFEDI 720 (997)
Q Consensus 648 ~~e~~~DC~I~V~vq~pp~~~~~~-------~~~~~kg~I~S~R~k~DpL~F~~l~l~~~~~~y~~q~~~~i~R~d~E~i 720 (997)
-.|....|+|+...|..-+++... +..+..|-.++.---.+|.||-|+.++.+.++. ++++.|.+...
T Consensus 226 ~~eme~~~N~~t~~qi~~~~s~eN~~~~~~~n~~q~~pl~~vsgl~yspDC~v~l~l~ntkg~~-----~vl~n~aVr~t 300 (636)
T KOG0828|consen 226 CSEMEKHCNIETAAQISTLKSSENEFYNGDKNSYQKEPLMEVSGLVYSPDCFVPLTLNNTKGNV-----EVLYNKAVRYT 300 (636)
T ss_pred HHHHHHhhhhHHHHHHHHhhhhhccccCCCcchhcCCceecccCcccCCCcCcceeeeccccch-----hhhhhhhHHHH
Confidence 356788999999999998875543 134567788888889999999999999998874 88888998888
Q ss_pred HHHHHHHHHHHHHh---hhhhhhccCCCCcchhHHHHHHHhhh--hccccccccc----ccccccccccccCCceeeecc
Q 001909 721 LRVLLLIIAIVCTG---SQLQYINHCIDPFSYISLVMIYIPAV--DYISPLISNG----EIFFKWKSFHAHRNQSYEMMN 791 (997)
Q Consensus 721 l~~v~ls~tl~cv~---~QL~h~kk~~~~~P~iSlvML~v~aL--Gy~~PLvln~----EaLF~~~~~~~~~~~~~~l~~ 791 (997)
+. .+-..++.++ +|..|-- |...-.+|++|+++||+ ||++-|.+.+ |.||... .+
T Consensus 301 ll--~~~~~~~~~~~Ll~q~~~~s--ps~v~rlSf~~i~mqa~mD~~Lall~lta~~vve~lylpf------------vt 364 (636)
T KOG0828|consen 301 LL--YIFIVLSQIFLLLRQMRINS--PSHVQRLSFLTIAMQAGMDAYLALLFLTANAVVESLYLPF------------VT 364 (636)
T ss_pred HH--HHHHHHHHHHHHHHHHhhcC--chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH------------HH
Confidence 63 3333333332 5554322 77777899999999999 9999999988 6666654 45
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHhh---------cccccccCCCCCCccccCCceEEEeehHHHHH-hHhheee
Q 001909 792 YDRFRFLGYVIKVLSLYALWLTSNLGKKVSA---------TRVRQMGHGLKQQSRLPNEKKIVLITCAVHVF-GFLVTHV 861 (997)
Q Consensus 792 ~~~le~ne~~vR~ltmvAflL~lRLlqlvw~---------aR~~~~~~~~~~~~~~~~ek~vl~~~l~ly~~-G~li~l~ 861 (997)
..|++ ++ ++.++++|+|..+|+ |-+.... ...+.+...+-....-+...-+. |+++.++
T Consensus 365 aAF~~-------fV--~~siFemRYLlsI~k~q~~~~~~~a~Rp~T~--~~~~n~~r~~~~~~e~s~~g~l~grf~fm~l 433 (636)
T KOG0828|consen 365 AAFFK-------FV--VFSIFEMRYLLSIWKVQNSNMPPPATRPSTS--NSSNNNTRQSNASNENSPWGILLGRFLFMYL 433 (636)
T ss_pred HHHHH-------HH--HHHHHHHHHHHHHHHhhcccCCCCCCCCCCC--CccccCcccccccccCCcchhhHHhHHHHHH
Confidence 56665 43 347899999999999 4444322 22222222221111111122222 3333332
Q ss_pred eeeccccccCCCCCccccccchhhhHHHHhh---hccccc-ccccchhHhHHhhhc-CCCCCcCccceeechhhhhhccc
Q 001909 862 IREMNAVETVPAPDKFVNERSKLLEWLKELD---AYLLLV-PDFFLLPQIVGNVLW-GNKGKPLRKFYYMGLTCLRFLLH 936 (997)
Q Consensus 862 ~h~~~~~~~~~~~~~~~~~~~~~~~W~~dL~---sY~GLv-lD~FLLPQIi~N~~~-~s~~kpLs~~fYvG~T~vRllpH 936 (997)
+-..-.+. + ..|-+.+. .|+.+. ...||+|||+.|++. .|| |||+..|.+|+|++||+|.
T Consensus 434 v~~~~~l~----------s----~~wp~q~r~yf~~iLif~~~SfWIPQIv~Nvvrg~SR-~Pl~w~yIlG~Tv~Rl~~p 498 (636)
T KOG0828|consen 434 VVCIASLY----------S----AFWPVQFRNYFIPILIFMYYSFWIPQIVANVVRGDSR-KPLHWYYILGMTVTRLAIP 498 (636)
T ss_pred HHHHHHhh----------c----cccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCC-CCcchhhhhhHhHHhhhcc
Confidence 22110100 0 01433333 445544 459999999999999 666 9999999999999999999
Q ss_pred ceeeecCccccccccCCcccccCCCCCcccccchhHHHHHHHHHHHHHHhhhcCc--ccC
Q 001909 937 IYDYVRDPVLLENYYGGFDRQKKSLDLNSKFGNIAVAVIAILLAMTVYKQQKKIK--ILP 994 (997)
Q Consensus 937 ~YD~~r~~~~~~~~~~s~~ya~~~~Dfys~awDi~Ip~~a~llA~~v~lQQr~g~--~~~ 994 (997)
+|-+.+. ++++...| +++|.|-..+-++.++.++++|..+|. .||
T Consensus 499 lyVF~~s--------~n~~r~~p-----~~~f~v~L~lwmlFQv~vLl~Qd~lGsR~FlP 545 (636)
T KOG0828|consen 499 LYVFGCS--------ENFMRVEP-----KYFFAVGLVLWMLFQVLVLLVQDYLGSRCFLP 545 (636)
T ss_pred eEEEecc--------hhhhccCC-----chhhHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 9999987 56788888 899999999999999999999999998 555
No 4
>PF06191 DUF995: Protein of unknown function (DUF995); InterPro: IPR009337 This is a family of uncharacterised Proteobacteria proteins.
Probab=26.88 E-value=47 Score=34.28 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=19.4
Q ss_pred CceEEEeeeeec-CCCcEEEeeccc
Q 001909 396 GLTLSAEGIWRS-SEGQLCMVGCLG 419 (997)
Q Consensus 396 ~~~l~AEG~wd~-~tg~LCmvgCr~ 419 (997)
+..=.|||.|.. ..|+|||.+=-.
T Consensus 66 ~~~s~g~GrW~Vt~~GklC~~a~W~ 90 (145)
T PF06191_consen 66 GSESYGEGRWFVTDNGKLCFRATWH 90 (145)
T ss_pred CcceeeeeEEEECCCCCEEEEeEEE
Confidence 456689999998 566999998764
No 5
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=13.94 E-value=1.1e+02 Score=33.39 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=51.4
Q ss_pred chhHhHHhhhcCCCCCcCccceeechhhhhhcccceeeecCcccccccc-CCcccccCCCCCcccccchhHHHHHHHHHH
Q 001909 903 LLPQIVGNVLWGNKGKPLRKFYYMGLTCLRFLLHIYDYVRDPVLLENYY-GGFDRQKKSLDLNSKFGNIAVAVIAILLAM 981 (997)
Q Consensus 903 LLPQIi~N~~~~s~~kpLs~~fYvG~T~vRllpH~YD~~r~~~~~~~~~-~s~~ya~~~~Dfys~awDi~Ip~~a~llA~ 981 (997)
.+|||+.|.-.+|- +-||..|+.=-++.=..--+|...+- +. |.. +.|.+.+|. =..-|+++.+-++++.+
T Consensus 19 ~~PQi~~n~k~ks~-~GlS~~~~~l~~~g~~~~~~yn~~~~--~~-~~~~~~~~~~~~~----v~~edl~~ai~~~il~~ 90 (220)
T TIGR00951 19 FYPQIIKNWRRKSA-EGLSFDFVMLNLVGFTAYVIFNFLQL--YC-WSITNEFPLSSPG----VTQNDVFFTLHAILICF 90 (220)
T ss_pred HhhHHHHHHhcccc-CCcCHHHHHHHHHHHHHHHHHHHHHh--cc-hhhhhccccccCC----CcHHHHHHHHHHHHHHH
Confidence 58999999855554 78999888765555444445654332 11 222 445554431 13358888899999999
Q ss_pred HHHHhhhcC
Q 001909 982 TVYKQQKKI 990 (997)
Q Consensus 982 ~v~lQQr~g 990 (997)
+++.|..+.
T Consensus 91 l~~~q~~~~ 99 (220)
T TIGR00951 91 IVLHQCGDY 99 (220)
T ss_pred HHHHHHhhc
Confidence 998887653
No 6
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=13.65 E-value=2.3e+02 Score=31.37 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCcchhHHHHHHHhhh
Q 001909 720 ILRVLLLIIAIVCTGSQLQYINHCIDPFSYISLVMIYIPAV 760 (997)
Q Consensus 720 il~~v~ls~tl~cv~~QL~h~kk~~~~~P~iSlvML~v~aL 760 (997)
++.++++..+++|++..|-=..-.-.+. |+|++|||++++
T Consensus 113 l~~~~~~~~v~a~~lFPlWP~~~r~gv~-YlS~~~lgll~~ 152 (224)
T PF03839_consen 113 LIGALLLVGVIAICLFPLWPRWMRQGVY-YLSVGALGLLGL 152 (224)
T ss_pred HHHHHHHHHHHHHHhhhcChHHHhheee-hhHHHHHHHHHH
Confidence 3334556666677654443332333455 999999988764
No 7
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=13.28 E-value=93 Score=25.72 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=14.8
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 001909 967 FGNIAVAVIAILLAMTVYK 985 (997)
Q Consensus 967 awDi~Ip~~a~llA~~v~l 985 (997)
+=-|+||++.++++++++|
T Consensus 14 a~~VvVPV~vI~~vl~~~l 32 (40)
T PF08693_consen 14 AVGVVVPVGVIIIVLGAFL 32 (40)
T ss_pred EEEEEechHHHHHHHHHHh
Confidence 4468899999888887765
No 8
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=12.26 E-value=93 Score=23.18 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=18.1
Q ss_pred chhHhHHhhhcCCCCCcCccceeec
Q 001909 903 LLPQIVGNVLWGNKGKPLRKFYYMG 927 (997)
Q Consensus 903 LLPQIi~N~~~~s~~kpLs~~fYvG 927 (997)
.+|||+.|.-.++ ++-||..|++-
T Consensus 3 ~~PQi~~~~~~ks-~~glS~~~~~l 26 (32)
T smart00679 3 LLPQIIKNYRRKS-TEGLSILFVLL 26 (32)
T ss_pred chhHHHHHHHcCC-cCcCCHHHHHH
Confidence 5899999987764 46888877653
No 9
>COG4037 Predicted membrane protein [Function unknown]
Probab=10.72 E-value=1.8e+02 Score=29.87 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=34.7
Q ss_pred hhhccCCCCcchhHHHHHHHhhh-hcccccccccccccccc
Q 001909 738 QYINHCIDPFSYISLVMIYIPAV-DYISPLISNGEIFFKWK 777 (997)
Q Consensus 738 ~h~kk~~~~~P~iSlvML~v~aL-Gy~~PLvln~EaLF~~~ 777 (997)
.-.-++|+.+|.+=-+.|++++| |..+|--+|-|-|+-+.
T Consensus 11 lN~l~~Pe~~prvf~~~Lal~~l~Gll~ph~lnp~QLYPrP 51 (163)
T COG4037 11 LNALRRPESMPRVFCLLLALLALLGLLCPHSLNPEQLYPRP 51 (163)
T ss_pred HHHhhCcchhHHHHHHHHHHHHHHHhhCccccCHHHcCCCC
Confidence 33457899999998899998887 99999999999998876
No 10
>KOG4558 consensus Uncharacterized conserved protein [Function unknown]
Probab=10.01 E-value=1.6e+02 Score=32.17 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.4
Q ss_pred ceeEEEEccceeeeeccceEEEEEEeC
Q 001909 429 NSRICLHFPLTFSITQGTTVFGTITSI 455 (997)
Q Consensus 429 ~i~vsl~FPa~~si~~rs~i~G~I~S~ 455 (997)
.+-||+|||.+| +.-.+-||||-+
T Consensus 94 ~femC~yfp~Tw---eQ~RisGqi~~i 117 (251)
T KOG4558|consen 94 PFEMCGYFPKTW---EQIRISGQIWLI 117 (251)
T ss_pred ccceeeeechhh---hheEecceEEEE
Confidence 378999999999 445699999988
Done!