Query 001909
Match_columns 997
No_of_seqs 111 out of 120
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:12:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ro2_B Peptide of nuclear mito 18.3 40 0.0014 24.3 1.0 19 22-40 10-28 (28)
2 1y4e_A Sodium/hydrogen exchang 16.1 19 0.00065 26.2 -1.1 15 901-915 9-23 (27)
3 3nfg_A DNA-directed RNA polyme 12.4 98 0.0033 29.0 2.3 20 616-635 74-93 (102)
4 3nff_A RNA polymerase I subuni 9.4 1.4E+02 0.0048 28.8 2.3 17 616-632 74-90 (122)
5 1q90_G Cytochrome B6F complex 5.1 4.4E+02 0.015 20.5 2.6 23 972-994 14-36 (37)
6 3iyj_F Major capsid protein L1 4.0 2.2E+03 0.075 25.0 8.4 15 622-636 146-160 (495)
7 2r5i_A L1 protein; HPV18, pent 4.0 1.6E+03 0.056 25.6 7.3 15 622-636 131-145 (428)
8 1vf5_G Protein PET G; photosyn 3.7 5E+02 0.017 20.2 2.0 22 972-993 14-35 (37)
9 3iyj_F Major capsid protein L1 3.6 3.1E+02 0.011 31.8 1.2 14 405-418 145-158 (495)
10 2r5i_A L1 protein; HPV18, pent 3.5 2.9E+02 0.0098 31.6 0.7 14 405-418 130-143 (428)
No 1
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=18.32 E-value=40 Score=24.30 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=14.4
Q ss_pred CCCCCcccccchhhHHHhh
Q 001909 22 DDIPSVVYTYNRFAEIQEK 40 (997)
Q Consensus 22 ~~~~~~~~~y~r~~~v~~~ 40 (997)
+|+|-.--++.||||.|.+
T Consensus 10 qdepeqlddw~riaelq~r 28 (28)
T 3ro2_B 10 QDEPEQLDDWNRIAELQQR 28 (28)
T ss_dssp CCCCCCCCCTTTGGGC---
T ss_pred cCCcccchhHHHHHHHhcC
Confidence 6788888999999998764
No 2
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=16.06 E-value=19 Score=26.24 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=11.2
Q ss_pred ccchhHhHHhhhcCC
Q 001909 901 FFLLPQIVGNVLWGN 915 (997)
Q Consensus 901 ~FLLPQIi~N~~~~s 915 (997)
.+|||+||.|+-...
T Consensus 9 ~~LLPPII~~aGy~l 23 (27)
T 1y4e_A 9 LFLLPPIILDAGYFL 23 (27)
T ss_dssp HHHSCCSSHHHHTTG
T ss_pred eeccCccEeeccccc
Confidence 368999999875443
No 3
>3nfg_A DNA-directed RNA polymerase I subunit RPA49; triple barrel, transcription, dimerization; 2.51A {Candida glabrata}
Probab=12.41 E-value=98 Score=28.97 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=15.9
Q ss_pred eeeeeeeCCCceEEEEeccc
Q 001909 616 SFEGIYDLTAGKMYLVGCRD 635 (997)
Q Consensus 616 saEGvYD~~tG~lcmVGCR~ 635 (997)
..=|||||+||+|=++==+-
T Consensus 74 y~VgVyDp~t~~lel~~Apl 93 (102)
T 3nfg_A 74 YMVGLYDKQSGKINLYRAPV 93 (102)
T ss_dssp EEEEEEETTTTEEEEEEECE
T ss_pred EEEEEEcCCCCeEEEEEecc
Confidence 66799999999998765443
No 4
>3nff_A RNA polymerase I subunit A49; tripple barrel, transcription, dimerization; 3.24A {Candida glabrata}
Probab=9.35 E-value=1.4e+02 Score=28.77 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=14.2
Q ss_pred eeeeeeeCCCceEEEEe
Q 001909 616 SFEGIYDLTAGKMYLVG 632 (997)
Q Consensus 616 saEGvYD~~tG~lcmVG 632 (997)
..=|||||+||+|=++=
T Consensus 74 YyVgVyDP~T~~leL~~ 90 (122)
T 3nff_A 74 YMVGLYDKQSGKINLYR 90 (122)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCCeEEEEE
Confidence 55799999999997764
No 5
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=5.06 E-value=4.4e+02 Score=20.52 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhcCcccC
Q 001909 972 VAVIAILLAMTVYKQQKKIKILP 994 (997)
Q Consensus 972 Ip~~a~llA~~v~lQQr~g~~~~ 994 (997)
||+..+=|-+.-|+|-|-|..|+
T Consensus 14 ipvtlaGLfv~Ay~QyrRg~~l~ 36 (37)
T 1q90_G 14 VPVTIAGLFVTAYLQYLRGDLAT 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHhhccccC
Confidence 56666666667799999998765
No 6
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single cryo-EM, high resolution, late protein, VIR virus; 4.20A {Bovine papillomavirus type 1}
Probab=4.03 E-value=2.2e+03 Score=24.98 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=13.4
Q ss_pred eCCCceEEEEecccc
Q 001909 622 DLTAGKMYLVGCRDV 636 (997)
Q Consensus 622 D~~tG~lcmVGCR~v 636 (997)
|||-=.|++|||.=-
T Consensus 146 DpKQ~QlfIVGC~P~ 160 (495)
T 3iyj_F 146 DAKQQQILLLGCTPA 160 (495)
T ss_dssp ECCCEEEEEEESSCC
T ss_pred CcceeeEEEEeccCC
Confidence 899999999999843
No 7
>2r5i_A L1 protein; HPV18, pentamer, structure, type specific epitope, capsid, capsid protein, virion; 3.40A {Human papillomavirus type 18} PDB: 3ofl_A*
Probab=4.02 E-value=1.6e+03 Score=25.59 Aligned_cols=15 Identities=20% Similarity=0.640 Sum_probs=13.3
Q ss_pred eCCCceEEEEecccc
Q 001909 622 DLTAGKMYLVGCRDV 636 (997)
Q Consensus 622 D~~tG~lcmVGCR~v 636 (997)
|||-=.||+|||.=-
T Consensus 131 DpKQ~Ql~ivGC~P~ 145 (428)
T 2r5i_A 131 DYKQTQLCILGCAPA 145 (428)
T ss_dssp ECCEEEEEEEESSCC
T ss_pred CccceeEEEEeccCC
Confidence 899999999999843
No 8
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=3.73 E-value=5e+02 Score=20.20 Aligned_cols=22 Identities=27% Similarity=0.129 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhhcCccc
Q 001909 972 VAVIAILLAMTVYKQQKKIKIL 993 (997)
Q Consensus 972 Ip~~a~llA~~v~lQQr~g~~~ 993 (997)
||+..+=|-+.-|+|-|-|..|
T Consensus 14 ipvtl~GLfv~Ay~QyrRg~ql 35 (37)
T 1vf5_G 14 VFATLGGLFYAAYQQYKRPNEL 35 (37)
T ss_dssp HHHHHHHHTHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHHHHhhcccc
Confidence 5555555566779999988765
No 9
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single cryo-EM, high resolution, late protein, VIR virus; 4.20A {Bovine papillomavirus type 1}
Probab=3.63 E-value=3.1e+02 Score=31.78 Aligned_cols=14 Identities=21% Similarity=0.627 Sum_probs=13.2
Q ss_pred eecCCCcEEEeecc
Q 001909 405 WRSSEGQLCMVGCL 418 (997)
Q Consensus 405 wd~~tg~LCmvgCr 418 (997)
.|+|..|||+|||.
T Consensus 145 ~DpKQ~QlfIVGC~ 158 (495)
T 3iyj_F 145 LDAKQQQILLLGCT 158 (495)
T ss_dssp EECCCEEEEEEESS
T ss_pred cCcceeeEEEEecc
Confidence 58999999999998
No 10
>2r5i_A L1 protein; HPV18, pentamer, structure, type specific epitope, capsid, capsid protein, virion; 3.40A {Human papillomavirus type 18} PDB: 3ofl_A*
Probab=3.49 E-value=2.9e+02 Score=31.62 Aligned_cols=14 Identities=36% Similarity=0.840 Sum_probs=13.2
Q ss_pred eecCCCcEEEeecc
Q 001909 405 WRSSEGQLCMVGCL 418 (997)
Q Consensus 405 wd~~tg~LCmvgCr 418 (997)
.|+|..|||+|||.
T Consensus 130 ~DpKQ~Ql~ivGC~ 143 (428)
T 2r5i_A 130 VDYKQTQLCILGCA 143 (428)
T ss_dssp EECCEEEEEEEESS
T ss_pred cCccceeEEEEecc
Confidence 69999999999998
Done!