Query 001909
Match_columns 997
No_of_seqs 111 out of 120
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 04:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001909.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001909hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bwqa1 b.7.1.2 (A:729-853) Re 19.5 95 0.0069 26.1 6.5 66 614-696 4-71 (125)
2 d1dqva1 b.7.1.2 (A:295-424) Sy 13.9 90 0.0065 26.6 4.9 69 609-697 3-74 (130)
3 d1dqva2 b.7.1.2 (A:425-569) Sy 13.0 87 0.0063 27.1 4.5 63 620-697 14-78 (145)
4 d2cm5a1 b.7.1.2 (A:541-677) C2 6.6 2.6E+02 0.019 23.3 5.0 63 620-697 9-73 (137)
5 d1rsya_ b.7.1.2 (A:) Synaptoga 5.2 5E+02 0.036 21.8 6.1 64 614-697 24-90 (143)
6 d1zaka2 g.41.2.1 (A:128-158) M 5.1 1E+02 0.0076 21.4 0.9 9 622-630 5-13 (31)
7 d2rkya1 g.27.1.1 (A:152-197) F 5.0 1.1E+02 0.0082 22.9 1.2 18 617-634 1-18 (46)
8 d1kzqa2 b.6.2.1 (A:132-255) Ma 4.7 1.9E+02 0.014 25.3 2.9 27 623-661 96-122 (124)
9 d1w15a_ b.7.1.2 (A:) Synaptota 4.6 3.5E+02 0.026 22.7 4.6 19 620-638 9-29 (138)
10 d2cg7a2 g.27.1.1 (A:62-108) Fi 4.5 1E+02 0.0076 23.2 0.7 15 619-633 4-18 (47)
No 1
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.45 E-value=95 Score=26.14 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=39.4
Q ss_pred eeeeeeeeeCCCceEEE--EeccccchhhhhhhhhcccccCCceeEEEEEEecCcccccccCceeEEEEeecCCCCCCCC
Q 001909 614 SMSFEGIYDLTAGKMYL--VGCRDVRLIQKKIKEEMNLERGMDCQFQVKVEYSPKDARWLKNSEVKISISSKRSKEDPLY 691 (997)
Q Consensus 614 sisaEGvYD~~tG~lcm--VGCR~v~~~~~~~~~~~~~e~~~DC~I~V~vq~pp~~~~~~~~~~~kg~I~S~R~k~DpL~ 691 (997)
.++++ ||+.+++|.. +.||++.. .+.+..|.--|+|.+-|-+.+. .+.+=+..+...||.+
T Consensus 4 ~l~l~--y~~~~~~L~V~V~~a~~L~~----------~~~~~~~dpyVkv~l~~~~~~~-----~~~kT~~~~~t~~P~w 66 (125)
T d2bwqa1 4 SIKLW--FDKVGHQLIVTILGAKDLPS----------REDGRPRNPYVKIYFLPDRSDK-----NKRRTKTVKKTLEPKW 66 (125)
T ss_dssp EEEEE--EETTTTEEEEEEEEEESCCC----------CTTSCCBCEEEEEEEESSCSGG-----GEEECCCCSSBSSCEE
T ss_pred EEEEE--EECCCCEEEEEEEEeECCCC----------cCCCCCCCEEEEEEEeCCCCCc-----cccccCEEcCCCCCEE
Confidence 34455 9999999976 89999853 2235567777777776543332 1222222344558876
Q ss_pred ccccc
Q 001909 692 FNPVS 696 (997)
Q Consensus 692 F~~l~ 696 (997)
=+.+.
T Consensus 67 ne~f~ 71 (125)
T d2bwqa1 67 NQTFI 71 (125)
T ss_dssp EEEEE
T ss_pred ccEEE
Confidence 44443
No 2
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.91 E-value=90 Score=26.63 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=39.3
Q ss_pred cccceeeeeeeeeeCCCceE--EEEeccccchhhhhhhhhcccccCCceeEEEEEEecCcccccccCceeEEEEeecC-C
Q 001909 609 HFNNISMSFEGIYDLTAGKM--YLVGCRDVRLIQKKIKEEMNLERGMDCQFQVKVEYSPKDARWLKNSEVKISISSKR-S 685 (997)
Q Consensus 609 ~~~~~sisaEGvYD~~tG~l--cmVGCR~v~~~~~~~~~~~~~e~~~DC~I~V~vq~pp~~~~~~~~~~~kg~I~S~R-~ 685 (997)
++..+.++++ ||+++|+| .++.||++... +.....||- |+|.+-|-..+ +-+ +++. .
T Consensus 3 p~G~l~~sl~--y~~~~~~L~V~V~~a~~L~~~--------~~~g~~dpy--v~v~l~~~~~~-------~~k-T~v~~~ 62 (130)
T d1dqva1 3 PCGRISFALR--YLYGSDQLVVRILQALDLPAK--------DSNGFSDPY--VKIYLLPDRKK-------KFQ-TKVHRK 62 (130)
T ss_dssp SSCEEEEEEE--CCSSSCEEEEEEEEEECCCCC--------STTSCCCEE--EEEECTTSTTS-------CEE-CCCCCS
T ss_pred CcEEEEEEEE--EECCCCEEEEEEEeeeCCccc--------cCCCCcceE--EEEEEccCCCc-------eEe-ceeEcC
Confidence 3455666776 99999998 67889988531 222234554 45555443211 112 3333 3
Q ss_pred CCCCCCcccccc
Q 001909 686 KEDPLYFNPVSL 697 (997)
Q Consensus 686 k~DpL~F~~l~l 697 (997)
..+|.+=+.+.+
T Consensus 63 t~~P~wne~f~f 74 (130)
T d1dqva1 63 TLNPIFNETFQF 74 (130)
T ss_dssp CSSCEEEEEEEE
T ss_pred CCCeeeeeEEEE
Confidence 448887766544
No 3
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.99 E-value=87 Score=27.15 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=36.1
Q ss_pred eeeCCCceEEE--EeccccchhhhhhhhhcccccCCceeEEEEEEecCcccccccCceeEEEEeecCCCCCCCCcccccc
Q 001909 620 IYDLTAGKMYL--VGCRDVRLIQKKIKEEMNLERGMDCQFQVKVEYSPKDARWLKNSEVKISISSKRSKEDPLYFNPVSL 697 (997)
Q Consensus 620 vYD~~tG~lcm--VGCR~v~~~~~~~~~~~~~e~~~DC~I~V~vq~pp~~~~~~~~~~~kg~I~S~R~k~DpL~F~~l~l 697 (997)
-|||.+|+|.+ +.||++... +..-.|..-|+|..-|-..+. .+-+=...+...+|.+-+.+.+
T Consensus 14 ~Y~~~~~~L~V~V~~a~nL~~~----------~~~~~~dpyv~v~l~~~~~~~-----~~~kT~~~~~t~~P~wne~f~F 78 (145)
T d1dqva2 14 CYLPTAGLLTVTIIKASNLKAM----------DLTGFSDPYVKASLISEGRRL-----KKRKTSIKKNTLNPTYNEALVF 78 (145)
T ss_dssp EEETTTTEEEEEEEEEESCCCC----------SSSSCCCEEEEECCCTTCCTT-----SCEECCCCCSCSSCEEEECCCC
T ss_pred EEcCCCCEEEEEEEEEeCCCCc----------CCCCCcCceEEEEEccCCccc-----eeecCEEEeCCCCceecceEEE
Confidence 48999999876 899988531 123345556666665543322 1112222344558877776654
No 4
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.59 E-value=2.6e+02 Score=23.33 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=34.0
Q ss_pred eeeCCCceEEE--EeccccchhhhhhhhhcccccCCceeEEEEEEecCcccccccCceeEEEEeecCCCCCCCCcccccc
Q 001909 620 IYDLTAGKMYL--VGCRDVRLIQKKIKEEMNLERGMDCQFQVKVEYSPKDARWLKNSEVKISISSKRSKEDPLYFNPVSL 697 (997)
Q Consensus 620 vYD~~tG~lcm--VGCR~v~~~~~~~~~~~~~e~~~DC~I~V~vq~pp~~~~~~~~~~~kg~I~S~R~k~DpL~F~~l~l 697 (997)
-|+|.+|+|.. +.||++... +.....||-+.|. .-|.+.+. .+-+-+..+...+|.|=+.+.+
T Consensus 9 ~Y~~~~~~L~V~v~~a~nL~~~--------~~~~~~dpyv~v~--l~~~~~~~-----~~~kT~v~~~t~~P~wne~f~f 73 (137)
T d2cm5a1 9 MYSTQQGGLIVGIIRCVHLAAM--------DANGYSDPFVKLW--LKPDMGKK-----AKHKTQIKKKTLNPEFNEEFFY 73 (137)
T ss_dssp EEETTTTEEEEEEEEEESCCCC--------STTSCCCEEEEEE--EETC---C-----CEEECCCCCSCSSCEEEEEEEE
T ss_pred EEECCCCEEEEEEEEEECCCCC--------CCCCCcCeEEEEE--EEcCCccc-----eeecCEeEcCCCCCccceEEEE
Confidence 48999999865 788887531 1122345544444 43432221 1223333455668987776654
No 5
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.16 E-value=5e+02 Score=21.76 Aligned_cols=64 Identities=16% Similarity=0.362 Sum_probs=35.4
Q ss_pred eeeeeeeeeCCCceEEE--EeccccchhhhhhhhhcccccCCceeEEEEEEecCcccccccCceeEEEEee-cCCCCCCC
Q 001909 614 SMSFEGIYDLTAGKMYL--VGCRDVRLIQKKIKEEMNLERGMDCQFQVKVEYSPKDARWLKNSEVKISISS-KRSKEDPL 690 (997)
Q Consensus 614 sisaEGvYD~~tG~lcm--VGCR~v~~~~~~~~~~~~~e~~~DC~I~V~vq~pp~~~~~~~~~~~kg~I~S-~R~k~DpL 690 (997)
.++++ ||+.+++|.. +.||++... +.+-.|.--|+|.+.|-..+. .| ++ .|...+|.
T Consensus 24 ~~sl~--y~~~~~~L~V~V~~a~~L~~~----------~~~g~~dpyV~v~l~~~~~~~-----~k---T~~~~~t~~P~ 83 (143)
T d1rsya_ 24 QYSLD--YDFQNNQLLVGIIQAAELPAL----------DMGGTSDPYVKVFLLPDKKKK-----FE---TKVHRKTLNPV 83 (143)
T ss_dssp EEEEE--EETTTTEEEEEEEEEESCCCC----------STTSCCCEEEEEEEETTCCSC-----EE---CCCCTTCSSCE
T ss_pred EEEEE--EeCCCCEEEEEEEEccCCCCC----------CCCCCCCeEEEEEEcCCCCee-----EE---EEEeccccCcc
Confidence 34444 8999998864 899988531 122234445566665543221 11 22 34455887
Q ss_pred Ccccccc
Q 001909 691 YFNPVSL 697 (997)
Q Consensus 691 ~F~~l~l 697 (997)
+=+.+.+
T Consensus 84 wne~f~f 90 (143)
T d1rsya_ 84 FNEQFTF 90 (143)
T ss_dssp EEEEEEE
T ss_pred eeeeeEE
Confidence 7665544
No 6
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=5.07 E-value=1e+02 Score=21.40 Aligned_cols=9 Identities=44% Similarity=0.785 Sum_probs=6.6
Q ss_pred eCCCceEEE
Q 001909 622 DLTAGKMYL 630 (997)
Q Consensus 622 D~~tG~lcm 630 (997)
||+||++|=
T Consensus 5 DP~TG~iYH 13 (31)
T d1zaka2 5 DPVTGKIYH 13 (31)
T ss_dssp CTTTCCEEE
T ss_pred CCCCCcEeE
Confidence 778887773
No 7
>d2rkya1 g.27.1.1 (A:152-197) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.03 E-value=1.1e+02 Score=22.94 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=14.7
Q ss_pred eeeeeeCCCceEEEEecc
Q 001909 617 FEGIYDLTAGKMYLVGCR 634 (997)
Q Consensus 617 aEGvYD~~tG~lcmVGCR 634 (997)
||==||+.+|+.|-||=.
T Consensus 1 ad~C~D~~~g~~Y~IGe~ 18 (46)
T d2rkya1 1 AEKCFDHAAGTSYVVGET 18 (46)
T ss_dssp CCEEEETTTTEEEETTCE
T ss_pred CcccccCCCceEEEcCCE
Confidence 466799999999999843
No 8
>d1kzqa2 b.6.2.1 (A:132-255) Major surface antigen p30, SAG1 {Toxoplasma gondii [TaxId: 5811]}
Probab=4.71 E-value=1.9e+02 Score=25.33 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=20.4
Q ss_pred CCCceEEEEeccccchhhhhhhhhcccccCCceeEEEEE
Q 001909 623 LTAGKMYLVGCRDVRLIQKKIKEEMNLERGMDCQFQVKV 661 (997)
Q Consensus 623 ~~tG~lcmVGCR~v~~~~~~~~~~~~~e~~~DC~I~V~v 661 (997)
|.+-+-++|||.....+ ..-|.+.|+|
T Consensus 96 P~~dq~f~vGC~~~~~~------------~~~C~V~V~V 122 (124)
T d1kzqa2 96 PAESKSVIIGCTGGSPE------------KHHCTVKLEF 122 (124)
T ss_dssp CSSCEEEEEEEEECSSS------------BEEEEEEEEE
T ss_pred CCCCceEEEEecCCCCC------------CCcEEEEEEe
Confidence 78889999999875431 3359999887
No 9
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.59 E-value=3.5e+02 Score=22.66 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=14.6
Q ss_pred eeeCCCceEEE--Eeccccch
Q 001909 620 IYDLTAGKMYL--VGCRDVRL 638 (997)
Q Consensus 620 vYD~~tG~lcm--VGCR~v~~ 638 (997)
-|+|.+|+|+. +.|+++..
T Consensus 9 ~Y~~~~~~L~V~v~~a~~L~~ 29 (138)
T d1w15a_ 9 CYQSTTNTLTVVVLKARHLPK 29 (138)
T ss_dssp EEETTTTEEEEEEEEEESCC-
T ss_pred EEcCCCCEEEEEEEEeECCCC
Confidence 38999998875 78888853
No 10
>d2cg7a2 g.27.1.1 (A:62-108) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.55 E-value=1e+02 Score=23.22 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.6
Q ss_pred eeeeCCCceEEEEec
Q 001909 619 GIYDLTAGKMYLVGC 633 (997)
Q Consensus 619 GvYD~~tG~lcmVGC 633 (997)
==||+.+|+.|-||=
T Consensus 4 ~C~D~~tg~~Y~IGe 18 (47)
T d2cg7a2 4 TCFDKYTGNTYRVGD 18 (47)
T ss_dssp EEECTTTCCEEETTC
T ss_pred ccccCCCccEEEcCC
Confidence 358999999999883
Done!