Query 001910
Match_columns 997
No_of_seqs 242 out of 1260
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 12:09:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959 Glycosyl hydrolase, fa 100.0 1E-227 2E-232 1896.3 77.7 943 29-997 25-993 (996)
2 PLN02701 alpha-mannosidase 100.0 2E-175 5E-180 1607.9 91.6 904 30-997 30-1049(1050)
3 KOG1958 Glycosyl hydrolase, fa 100.0 1E-155 2E-160 1314.9 59.7 891 30-997 152-1128(1129)
4 PRK09819 alpha-mannosidase; Pr 100.0 1E-106 2E-111 1008.9 78.9 817 40-996 3-875 (875)
5 KOG4342 Alpha-mannosidase [Car 100.0 9.1E-80 2E-84 670.3 43.7 699 39-913 279-1018(1078)
6 PF01074 Glyco_hydro_38: Glyco 100.0 1.4E-59 3.1E-64 514.9 24.5 272 42-353 1-275 (275)
7 COG0383 AMS1 Alpha-mannosidase 100.0 5.6E-52 1.2E-56 508.2 32.0 722 41-997 198-943 (943)
8 PF07748 Glyco_hydro_38C: Glyc 100.0 1.7E-41 3.6E-46 401.0 37.6 426 490-994 1-457 (457)
9 PF09261 Alpha-mann_mid: Alpha 99.8 2.3E-21 5.1E-26 169.3 1.2 75 358-432 1-80 (80)
10 smart00872 Alpha-mann_mid Alph 99.8 8.4E-20 1.8E-24 159.0 5.5 74 359-432 1-79 (79)
11 COG0383 AMS1 Alpha-mannosidase 99.8 1.9E-20 4.1E-25 231.0 -1.8 354 39-434 2-389 (943)
12 PF03065 Glyco_hydro_57: Glyco 98.4 1.8E-06 4E-11 98.5 11.1 121 75-197 28-195 (360)
13 COG1543 Uncharacterized conser 96.2 0.015 3.2E-07 65.6 8.4 92 103-196 115-207 (504)
14 PF01522 Polysacc_deac_1: Poly 95.6 0.13 2.7E-06 48.7 11.1 103 77-192 18-122 (123)
15 COG1449 Alpha-amylase/alpha-ma 94.7 1.4 3E-05 53.6 18.6 97 94-192 162-262 (615)
16 TIGR03212 uraD_N-term-dom puta 94.1 4.2 9.2E-05 45.0 19.4 111 75-199 75-187 (297)
17 TIGR02764 spore_ybaN_pdaB poly 94.0 0.34 7.3E-06 50.0 10.1 101 80-193 22-124 (191)
18 PRK14582 pgaB outer membrane N 93.7 5.7 0.00012 48.7 20.9 151 115-319 168-347 (671)
19 TIGR02884 spore_pdaA delta-lac 92.8 0.65 1.4E-05 49.3 10.1 101 80-193 53-156 (224)
20 TIGR03006 pepcterm_polyde poly 90.8 1.9 4.2E-05 46.9 11.0 111 74-196 25-139 (265)
21 TIGR02873 spore_ylxY probable 89.8 2.8 6.1E-05 45.7 11.3 101 79-192 100-202 (268)
22 PRK14581 hmsF outer membrane N 85.8 3.8 8.3E-05 50.1 10.1 81 114-197 167-275 (672)
23 PRK15394 4-deoxy-4-formamido-L 76.2 1.3E+02 0.0028 33.4 17.0 81 115-199 92-176 (296)
24 PF07481 DUF1521: Domain of Un 69.2 37 0.00081 33.2 9.2 95 599-705 8-103 (171)
25 PF08672 APC2: Anaphase promot 59.1 9.7 0.00021 31.2 2.8 23 111-133 36-58 (60)
26 TIGR03826 YvyF flagellar opero 45.2 18 0.0004 34.9 2.8 52 74-132 27-78 (137)
27 PF12395 DUF3658: Protein of u 36.5 53 0.0011 30.6 4.4 69 42-137 40-108 (111)
28 PRK10148 hypothetical protein; 30.9 18 0.00039 35.6 0.3 18 165-182 123-140 (147)
29 TIGR03593 yidC_nterm membrane 30.8 3.6E+02 0.0077 30.8 11.0 29 598-626 73-101 (366)
30 PF02929 Bgal_small_N: Beta ga 29.3 4.2E+02 0.0092 28.9 10.7 105 603-711 2-121 (276)
31 PF14849 YidC_periplas: YidC p 28.7 1.7E+02 0.0038 31.6 7.6 25 601-625 2-26 (270)
32 COG0726 CDA1 Predicted xylanas 27.7 3.9E+02 0.0085 28.2 10.2 114 54-191 66-181 (267)
33 PRK12465 xylose isomerase; Pro 27.2 94 0.002 35.6 5.0 65 263-332 85-154 (445)
34 PF06044 DRP: Dam-replacing fa 23.6 1.3E+02 0.0028 31.9 4.8 91 35-132 146-249 (254)
35 PF10074 DUF2285: Uncharacteri 21.7 17 0.00037 33.5 -1.6 27 104-133 75-101 (106)
36 PF01479 S4: S4 domain; Inter 20.7 1E+02 0.0022 23.4 2.8 31 104-135 5-36 (48)
37 PTZ00150 phosphoglucomutase-2- 20.6 3.1E+02 0.0066 33.7 8.3 95 103-198 10-126 (584)
38 PHA03393 odv-e66 occlusion-der 20.2 2.2E+02 0.0047 35.1 6.6 111 54-185 54-175 (682)
39 PF08220 HTH_DeoR: DeoR-like h 20.1 4.5E+02 0.0098 21.0 6.5 53 81-138 4-56 (57)
No 1
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-227 Score=1896.33 Aligned_cols=943 Identities=50% Similarity=0.835 Sum_probs=859.6
Q ss_pred eecCCCCccCCceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhh
Q 001910 29 KYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVG 108 (997)
Q Consensus 29 ~~~~~~~~~~~~~~VhlvpHSH~D~gWl~t~~ey~~g~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~ 108 (997)
+|++|+...+++++||||||||+|+|||||+||||+|++|.||++.|++|||+||++|.+||+|||+++|++||.+||.+
T Consensus 25 ~y~t~~~~~~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rWW~~ 104 (996)
T KOG1959|consen 25 GYNTCHKVVPNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARWWNE 104 (996)
T ss_pred ccCCCccccCceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHHHHh
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcC--CCCceeeecCCCCCChhhHHHHhh
Q 001910 109 QSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFN--KTPKAGWQIDPFGHSAVQAYLLGV 186 (997)
Q Consensus 109 ~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG--~~p~v~w~iD~FGhs~~~p~ll~~ 186 (997)
|++++|+.||+||++|||||+||||||+|||++||.|+||||+.||+||.++|| .+|++||||||||||+.+|+||+
T Consensus 105 qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslfA- 183 (996)
T KOG1959|consen 105 QSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLFA- 183 (996)
T ss_pred cCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHHH-
Confidence 999999999999999999999999999999999999999999999999999999 79999999999999999999996
Q ss_pred hcCCcEEEEeccChHHHHhhhccCCeeEEEecCCCCCCCCceEEeecCCCCCCCCCCCcccCCCCCCccCCCCCCcccHH
Q 001910 187 ELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVE 266 (997)
Q Consensus 187 ~~G~~~~~~~Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~I~t~~~~~~Y~~p~~f~f~~~~~~~p~~~~~~~~~~nv~ 266 (997)
+||||+.+|+||||+||+.|..++.|||+|+|++++++.++|||++|+.||++|.|||||..|.+.|++|++.+.++||+
T Consensus 184 qmGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P~gfc~dv~c~d~Pi~D~~~~~d~NVk 263 (996)
T KOG1959|consen 184 QMGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPPPGFCFDVLCGDDPIIDGPRSYDYNVK 263 (996)
T ss_pred HhCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCCCCceeccccCCCCCCCCCCCCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHhc---CC-ceeEEEcChhhHHHHHHhcCCCC
Q 001910 267 QWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNK---GG-RVNALYSTPSLYTEAKNAANGPW 342 (997)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~---~~-~~~i~~sT~~~Yf~~v~~~~~~~ 342 (997)
+|++.|++..+.++.+|+|||||+|||+||+|.+|..||+||||||+|+|+ .+ .+++.||||+||++++++.+..|
T Consensus 264 erVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~~~Tw 343 (996)
T KOG1959|consen 264 ERVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAANQTW 343 (996)
T ss_pred HHHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999994 34 89999999999999999999999
Q ss_pred CCccCCCccccccCCCcceeeeecccchhhHHHHhhhHHHHHHHHHHhhCCCC--CCCchHHHHHHHHhhccccCCCCCC
Q 001910 343 PLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKS--PGPTTSALGDALGIAQHHDAVTGTA 420 (997)
Q Consensus 343 p~~~gDf~py~~~~~~yWtG~yTSrp~~K~~~R~~e~~L~~ae~l~~l~~~~~--~~~~~~~l~~~l~~~QhHDaItGTs 420 (997)
|+++.|||||++++|.||||||||||.+|++.|+++++|++|+||+++++... ..+.++.|+++|++.|||||||||+
T Consensus 344 p~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~~la~l~~~~~~~dl~~Lream~i~QHHDAVTGTe 423 (996)
T KOG1959|consen 344 PVKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLSVLAGLSSTEQGPDLDYLREAMAIMQHHDAVTGTE 423 (996)
T ss_pred cccccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHhhhcCCCccccCccHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999999999999999999999999987654 5678999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccccccccCCCCCCCCCCCCeEEEEEEcCCCc
Q 001910 421 KQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGW 500 (997)
Q Consensus 421 ~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~v~Npl~~ 500 (997)
|++|.+||.++|..|+..|+.+++.+|+.|.... ..+|++|++||+|+||.+++ .++.+.|++||||+|
T Consensus 424 kq~Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~--------~~~f~~C~~lNiS~C~~t~~---~~~~~~v~~YNpLa~ 492 (996)
T KOG1959|consen 424 KQHVADDYARRLADGILGAEKLARDALRKLTNLP--------NGEFQSCLLLNISECAFTKD---GADNFIVTLYNPLAH 492 (996)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------CccchhhhhhccccCCCCcC---CcCcEEEEEEcCCcc
Confidence 9999999999999999999999999999998753 34789999999999999863 367799999999999
Q ss_pred ceeEEEEEEEcCCcEEEEcCCCCeeeEEEeeccccccccchhhhhhccCCCCCCCCcEEEEEEEeeCCCceEEEEEEecC
Q 001910 501 NRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAA 580 (997)
Q Consensus 501 ~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~ 580 (997)
.++++|+|||..+++.|+|+.|++|++|++|.......+. .......++|+|.|.|||+|+++|.|+...
T Consensus 493 ~~t~~VRiPV~~~~~~V~D~~G~~v~Sqivp~~~~~~al~----------~~~~~~~~eLvf~asvpplg~aty~i~k~~ 562 (996)
T KOG1959|consen 493 TVTQYVRIPVKEENYRVTDEKGRTVPSQIVPVPWQVLALE----------SRNNDTKHELVFKASVPPLGIATYFIKKVA 562 (996)
T ss_pred eeeeEEEEeccCCCeEEECCCCCCcccceeccchhhhhhh----------ccccCCCceEEEEEEecCccceEEEEeecC
Confidence 9999999999999999999999999999999975543331 112335689999999999999999999655
Q ss_pred CccccccccccccCCCCCCceEecCCeEEEEEEcCCCcEEEEEecCCceeeeeeeEEEEeeccc---CCCCCCcceEccC
Q 001910 581 GKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMV---DTQSSGAYIFRPN 657 (997)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~ieN~~~~v~~d~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~---~~~~sgAY~F~P~ 657 (997)
.....+.+............+.|+|+++++.||.++|.+++|....+|++..+.|.|.+|.++. +.+.||||+|+|
T Consensus 563 ~~~~~~~~~~~~i~~~~~n~~~V~n~~~kl~fd~~tG~l~~v~~n~t~~t~~V~Q~f~~Y~~~~g~n~~q~SgAYiFRp- 641 (996)
T KOG1959|consen 563 STERGSASHVRNIKKRESNATEVGNSHLKLVFDNDTGLLKTVEMNQTGVTENVDQEFGYYKGYRGDNDKQASGAYIFRP- 641 (996)
T ss_pred cccccccccccccccccCcceEeccceEEEEEcCCCCceEEEEecccCcceeeeeeeEEEEeecCCcCCccCcceEecC-
Confidence 4332111111111123334489999999999998899999999888999999999999998765 247899999999
Q ss_pred CCcccccC-CCccEEEEecCceEEEEEEecceEEEEEEEeecCCceeEEEEECCeeccCCCCcEEEEEEEeeccCCcEEE
Q 001910 658 GAQPNVVS-RSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFY 736 (997)
Q Consensus 658 ~~~~~~~~-~~~~i~i~~Gpl~~~v~~~~~~~i~q~vrLy~~~~~ie~e~~v~~ip~~d~~~~e~~~rf~t~i~s~~~fy 736 (997)
+..++++. ...+++|+.|||+.||++.++.|++|.+|+|+|.+++|+||.|||||++|..|||++.||+|+|.|++.||
T Consensus 642 ~~~~~~~~~~~vel~vv~G~LV~EVhQ~f~~wiSQviRvy~g~~~~E~Ew~VGpIp~~d~~gkEvVtr~~t~i~S~g~fY 721 (996)
T KOG1959|consen 642 GQADIPIVSDQVELTVVDGPLVKEVHQQFNPWISQVIRVYEGKNHVEFEWLVGPIPIDDGIGKEVVTRFSTEISSNGVFY 721 (996)
T ss_pred CCCCccccccceEEEEecCchHHHHHHHHHHHHhheeEecCCCcceEEEEEecceecCCCccceEEEEeccccccCceEE
Confidence 44334433 35788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccccccccccccccccCCCCCcccceEeeceeEEEeeCCceEEEEeCCCceeeeccCcEEEEEEec--------C
Q 001910 737 TDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHR--------G 808 (997)
Q Consensus 737 tDsnG~~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~ltvltdr~~G~~s~~~G~ielmL~R--------G 808 (997)
|||||+||+||.+++|++|....++|++||||||++.+||+|++.+|+|||||+|||+|++||+||||||| |
T Consensus 722 TDSNGRe~~kR~~d~r~~~~~~~~epiAGNYYPvt~~i~lqD~~~rl~vL~DRAqGgsSl~dG~lElMLHRRl~~DD~~G 801 (996)
T KOG1959|consen 722 TDSNGREMIKRVRDKREDFVLDVNEPIAGNYYPVTSRIYLQDSKKRLSVLNDRAQGGSSLKDGQLELMLHRRLLNDDGRG 801 (996)
T ss_pred ecCcHHHHHHHHhcccCCCccccCccccccccccceeeEEecCCceEEEEeecccCCccccCCeEEEEeeehhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCccccccccccCCCCceEeeeEEEeccccCccc-hhcccchhhhcccceeeeeccccccccccccCccccCccCCCCC
Q 001910 809 VGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGA-RWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLP 887 (997)
Q Consensus 809 vge~l~e~~~~~~~~~gl~~~g~~~l~l~~~~~~~-~~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~s~l~~~~~lp 887 (997)
|||+|||+.++ ..||++||+|++.|+....++ ..+|..++++..|.+.+|++.....+........+.+..++.||
T Consensus 802 v~EaLnEt~~~---~~gL~~rGk~~~~l~~~~d~a~~~~r~~~~ei~~P~~~~f~~~~~~~~~~~~s~~~~~f~~~~~lP 878 (996)
T KOG1959|consen 802 VGEALNETVYG---HAGLIARGKLYVLLDKAGDGATGWRRLAEQEIHLPLWKFFSKPEGGEALNSLSIPGSAFSGSYDLP 878 (996)
T ss_pred cchhccccccc---ccceEEeeeEEEEEecccccchhhhhhhhhhcccHHHHHhhcCCCccchhhcCCCccccccccCCC
Confidence 99999999885 279999999999999888775 67788899999999999987655444333333333344456899
Q ss_pred CcceEEEeeecCCCcEEEEEecccccCCCCCcceeeEeehhhhcCcCccceeeecccccccchhhccceeeeee-CCC--
Q 001910 888 LNVALITLEELDDGSVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVE-GES-- 964 (997)
Q Consensus 888 ~nv~lltl~~~~~~~illRl~~~~~~~~~~~~s~~~~v~l~~lf~~~~v~~~~E~sLt~~~~~~~~~~~~w~~~-~~~-- 964 (997)
.||||+||++|+++.+||||+|+|++|||+++|++++|||.+||..+++..++||||+||+++++|+|++|..+ .+.
T Consensus 879 ~~vhLlTLe~~~~~~vLlRleh~~e~gED~~~s~vvsfnl~~lf~~~~i~~i~EttL~gN~~ls~mkr~k~~~~~~G~~~ 958 (996)
T KOG1959|consen 879 QSVHLLTLEEWSKDEVLLRLEHLYEVGEDSELSQVVSFNLRKLFSALDIVEIRETTLDGNQPLSDMKRFKFHWDVSGEKP 958 (996)
T ss_pred cceeeeecccCCCCceEeeehhhhhcccccccCcceEEEhHHhhcccCeeEEEEeeccCccChhhhhhhccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888776 331
Q ss_pred -CCcCCCCCCCCCCC-CCceEEecCCceeEEEEEC
Q 001910 965 -GKTHSPVRGGPLDA-STLVVELGPMEIRTFLLKF 997 (997)
Q Consensus 965 -~~~~~~~~~~~~~~-~~~~v~l~P~eIrTf~i~~ 997 (997)
.....+.+..|+++ +.+.|+|.|||||||+|++
T Consensus 959 ~~~~~~~s~~~p~~~~~~~~vtL~PmeIRTfii~~ 993 (996)
T KOG1959|consen 959 SGVEYSTSRHKPLDKTSEFIVTLHPMEIRTFIIKF 993 (996)
T ss_pred CCccccccCCCCCCcccceEEEEeccEEEEEEEEE
Confidence 12333445566654 6789999999999999974
No 2
>PLN02701 alpha-mannosidase
Probab=100.00 E-value=2.1e-175 Score=1607.91 Aligned_cols=904 Identities=29% Similarity=0.510 Sum_probs=755.9
Q ss_pred ecCCCCccCCceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhc
Q 001910 30 YNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQ 109 (997)
Q Consensus 30 ~~~~~~~~~~~~~VhlvpHSH~D~gWl~t~~ey~~g~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~ 109 (997)
|+..++. +++++||||||||||+|||||++|||. +.+++||++||+.|++||+|||+|+|++||++||+++
T Consensus 30 y~~~~~~-~~~l~VhlVpHSH~D~gWl~T~~eyy~--------~~~~~ild~vv~~L~~dp~rkFi~~E~~fl~~Ww~~~ 100 (1050)
T PLN02701 30 YRGDEWD-REKLKVFVVPHSHNDPGWILTVEEYYQ--------EQSRHILDTIVESLSKDPRRKFIWEEMSYLERWWRDA 100 (1050)
T ss_pred ecccccC-CcceEEEEeCCCCCCHHHcCcHHHHHH--------HHHHHHHHHHHHHHHhCcCcceeeccHHHHHHHHHhc
Confidence 7666554 788999999999999999999999997 7999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcC
Q 001910 110 SPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELG 189 (997)
Q Consensus 110 ~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G 189 (997)
+|+++++||+||++||||||||||||+|||++|||+|||||++||+|++++||+.|++||+|||||||++||+||+ +||
T Consensus 101 ~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG~~P~~~W~iDpFGhs~~~P~Ll~-~~G 179 (1050)
T PLN02701 101 SPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSWAIDPFGYSSTMAYLLR-RMG 179 (1050)
T ss_pred CHHHHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcCCCCCcCccCCCCCCCHHHHHHHH-hCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred CcEEEEeccChHHHHhhhccCCeeEEEecCCCCCCCCceEEeecCC-CC------CCCCCCC--cccCC------CCCCc
Q 001910 190 FDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPV-HY------SPPSGFH--FELTD------DFDPV 254 (997)
Q Consensus 190 ~~~~~~~Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~I~t~~~~~-~Y------~~p~~f~--f~~~~------~~~p~ 254 (997)
|++++|+|++|++|..|..++.+||+|+++++...|++||||+||+ +| ++|++|| ||..+ ..|||
T Consensus 180 ~~~~~~~R~~y~~k~~~~~~~~~eF~W~~s~~~~dgs~Ift~~lp~y~Y~~p~~~~p~p~~c~~Fd~~~~~~~~~~~cp~ 259 (1050)
T PLN02701 180 FENMLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMRGFQYELCPW 259 (1050)
T ss_pred CceEEEeccchHHHHHHhhcCCceEEEeCCCCCCCCCEEEEEEccccccCcccccCCCcccccccccccccccccccCcc
Confidence 9999999999999999999999999999977766699999999994 44 4556777 55442 24788
Q ss_pred cCCC-CCCcccHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCc---cchHHHHHHHHHHHHHHhcCC--ceeEEEcCh
Q 001910 255 QDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQY---QYAESWFKQMDKLIHYVNKGG--RVNALYSTP 328 (997)
Q Consensus 255 ~~~~-~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~---~~a~~~~~~~~~li~~~N~~~--~~~i~~sT~ 328 (997)
.++| .++++|++++++.|++++++++..|+++++|+|+|+||+| .+|..||+||+++|+++|+++ .++++||||
T Consensus 260 ~~~p~~~~~~nv~~r~~~~~~~~~~~s~~~rtn~iL~p~GdDf~~~~~~~a~~~f~n~dkli~~iN~~~~~~~~i~~ST~ 339 (1050)
T PLN02701 260 GKHPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKLFDYINSNPSLKAEVKFGTL 339 (1050)
T ss_pred cCCccccchhHHHHHHHHHHHHHHHhhccccCCeEEEecCCCCCCcchhHHHHHHHhHHHHHHHHhhCcccCceEEECCH
Confidence 7764 4788999999999999999999999999999999999999 468999999999999999764 599999999
Q ss_pred hhHHHHHHhcC----------------CCCCCccCCCccccccCCCcceeeeecccchhhHHHHhhhHHHHHHHHHHhhC
Q 001910 329 SLYTEAKNAAN----------------GPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAG 392 (997)
Q Consensus 329 ~~Yf~~v~~~~----------------~~~p~~~gDf~py~~~~~~yWtG~yTSrp~~K~~~R~~e~~L~~ae~l~~l~~ 392 (997)
++||+++++.. ..||+++||||||+++.++||||||||||.+|+++|.+|++|++||+|++++.
T Consensus 340 ~~Yf~~l~~~~~~~~~~~~ge~~~~~~~~~p~~~gDff~Ya~~~~~yWTGyyTSRp~lK~~~R~~e~~L~~aE~L~sla~ 419 (1050)
T PLN02701 340 EDYFSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEILFSFLL 419 (1050)
T ss_pred HHHHHHHHhhhccccccccccccccccCCCceecccccccccccccccceeeecHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998753 57999999999999999999999999999999999999999999999999842
Q ss_pred --------CCCC---CCchHHHHHHHHhhccccCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCC
Q 001910 393 --------KKSP---GPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTK 461 (997)
Q Consensus 393 --------~~~~---~~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~ 461 (997)
..++ ...++.+||+|+++||||||||||+++|++||..||.+++..++.+++.+++.|+..... .+..
T Consensus 420 ~~~~~~~~~~~~~~~~~~L~~~wk~l~~~QhHDaItGTsk~~V~~Dy~~rl~~~~~~~~~~~~~al~~L~~~~~~-~~~~ 498 (1050)
T PLN02701 420 GYCRRFQCEKLPTSFSYKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAVEVLLGIRHE-KSDQ 498 (1050)
T ss_pred hhhhhccccCCChhhHHHHHHHHHHHHhhccCcCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cccc
Confidence 2344 245788999999999999999999999999999999999999999999999999874321 1222
Q ss_pred CCCCccccc-ccccccCCCCCC-CCCCCCeEEEEEEcCCCcceeEEEEEEEcCCcEEEEcCCCCeeeEEEeecccccccc
Q 001910 462 PASTFSQCP-LLNISYCPPTEK-GIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNL 539 (997)
Q Consensus 462 ~~~~~~~~~-~ln~s~~~~~~~-~~~~~~~~~v~v~Npl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~ 539 (997)
+...|+.|. .+|++.||.+.. .+..++...|+|||||+|+|+++|+|+|+.+.+.|+|++|++|++|++|.+.....
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvfNpL~~~r~~vV~v~V~~~~~~V~d~~g~~v~~Qi~~~~~~~~~- 577 (1050)
T PLN02701 499 TPSWFEPEQSRSKYDMLPVHKVINLREGKAHRVVFFNPLEQTREEVVMVVVDRPAVCVFDSNWTCVPSQISPEWQHDGE- 577 (1050)
T ss_pred ccccccccccccccccccccccccccCCCceEEEEECCCCceeeEEEEEEecCCcEEEEcCCCCEEeEEEecccccccc-
Confidence 334577784 568999987742 12335568999999999999999999999999999999999999999988542110
Q ss_pred chhhhhhccCCCCCCCCcEEEEEEEeeCCCceEEEEEEecCCccc-ccccccc--------------ccCCCCCCceEec
Q 001910 540 RKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVK-RRKGFFL--------------AADSPQDKTVEVG 604 (997)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~ie 604 (997)
......|+|.|.++||||||++|.|........ ...+.+. .......+.++||
T Consensus 578 ------------~~~~~~~~l~F~a~vPplG~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie 645 (1050)
T PLN02701 578 ------------KLFTGRHRLYWKASVPALGLETYFIANGNVSCEKAVPAKLKVFNSDDKFPCPEPYSCSKLEGDTVEIS 645 (1050)
T ss_pred ------------ccccceEEEEEEEecCCceeEEEEEEEcCCCcccccccccccccccccccccccccccccCCCcEEEe
Confidence 012356899999999999999999987532111 0000000 0001123458999
Q ss_pred CCeEEEEEEcCCCcEEEEEecCCceeeeeeeEEEEeecccCCCCCCcceEccCCCcccccCCCccEEEEecCceEEEEEE
Q 001910 605 PGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQ 684 (997)
Q Consensus 605 N~~~~v~~d~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~~~~~sgAY~F~P~~~~~~~~~~~~~i~i~~Gpl~~~v~~~ 684 (997)
|++++|+||++||.|++|+++++|++..+.++|.+|.+ +.||||+|+|++.+.........+.+++||++++|++.
T Consensus 646 N~~lkl~Fd~~TG~L~si~~~~~g~~~~v~q~f~~Y~s----~~SGAYiFrP~~~~~p~~~~~~~~~v~~Gplv~eV~~~ 721 (1050)
T PLN02701 646 NSHQTLGFDVKTGLLRKIKIHKNGSETVVGEEIGMYSS----QGSGAYLFKPDGEAQPIVQAGGLVVVSEGPLVQEVHSV 721 (1050)
T ss_pred cCeEEEEEcCCCCceeEEEecccCceecceeeeeeecC----CCCcceEEcCCCCCcccCCCCceEEEEeCCEEEEEEEE
Confidence 99999999999999999999999999999999999974 57899999998876222222234568999999999997
Q ss_pred e-----cceEEEEEEEeec-----CCceeEEEEECCeeccCCCCcEEEEEEEeeccCCcEEEEccCCccccccccccccc
Q 001910 685 F-----NSWIYQVTRLYID-----KEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRAD 754 (997)
Q Consensus 685 ~-----~~~i~q~vrLy~~-----~~~ie~e~~v~~ip~~d~~~~e~~~rf~t~i~s~~~fytDsnG~~~ikR~~~~r~~ 754 (997)
+ +++++|++|||++ ..++|+|+.|++||. |..|+|+++||.|+|+|+++||||+|||||+||+ +
T Consensus 722 ~~~~~~~s~isQ~iRLY~~~~~~~~~~vE~e~~V~~ip~-d~~~kEii~R~~T~i~s~~~FYTDsNG~qm~kR~-----~ 795 (1050)
T PLN02701 722 PKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGH-DFNDKELIVRFKTDIDNKRVFYSDLNGFQMSRRE-----T 795 (1050)
T ss_pred eecccCCcceEEEEEEecCCCccccceEEEEEEecCccc-CCCCcEEEEEEeecccCCCeEEEcCccceeeeec-----c
Confidence 6 5789999999998 678999999999997 6789999999999999999999999999999996 3
Q ss_pred cccCCCCCcccceEeeceeEEEee-CCceEEEEeCCCceeeeccCcEEEEEEec--------CCCCccccccccccCCCC
Q 001910 755 WSLQVNEPVAGNYYPLNLGIFITD-KKSEFSVLVDRATGGASIKDGQVEIMLHR--------GVGEALDESVCVRDNCEG 825 (997)
Q Consensus 755 w~~~~~~pv~~NyYP~~s~~~I~D-~~~~ltvltdr~~G~~s~~~G~ielmL~R--------Gvge~l~e~~~~~~~~~g 825 (997)
|+ ++|+++|||||+++|||+| ++.||||+|||++||+|+++|+||||||| ||||+|+|+.
T Consensus 796 ~~---~~Pv~gNYYPv~s~a~IqD~~~~rltvltdrs~G~sSl~~GqLEiMLhRRLl~DD~rGvge~l~dnk-------- 864 (1050)
T PLN02701 796 YD---KIPLQGNYYPMPSLAFLQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVMDNR-------- 864 (1050)
T ss_pred cc---cCccccccccccceEEEEcCCCCeEEEEeccCcccccCCCcEEEEEEEeecccccCccccccccccc--------
Confidence 43 5999999999999999999 66899999999999999999999999999 9999999985
Q ss_pred ceEeeeEEEeccccCccch------------hcccchhhhcccceeeeeccccc-cccccccCccccCccCCCCCCcceE
Q 001910 826 LTVRGNYYLSVNQLGAGAR------------WRRTTGQEVYSPLLLAFTQEKLE-TWTESHLTKSTAMESDYSLPLNVAL 892 (997)
Q Consensus 826 l~~~g~~~l~l~~~~~~~~------------~~r~~~~~l~~p~~~~~~~~~~~-~~~~~~~~~~s~l~~~~~lp~nv~l 892 (997)
++..+|+|++++...... ..+..+..|++|+++++...... ........+|++|.+ +|||++||
T Consensus 865 -~~~~~f~ll~e~~~~~~~~~~~~~~~~~Sl~sh~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~--~lpcD~hl 941 (1050)
T PLN02701 865 -PMNVVFHLLLESNISSSPPASNPLPLQPSLLSHRVGAHLNYPMHAFLAKKPQATSVENPQDTSFAPLAK--PLPCDLHI 941 (1050)
T ss_pred -cccceEEEEEecccccCCCCCCCCcCCccHHHHHHHHhhcCCchhhcccCccccccccccccccccccC--CCCCcEEE
Confidence 467799999986653210 12345788999999887433221 111112267888765 89999999
Q ss_pred EEeeecCCC-------------cEEEEEecccccC--C--CCCcce-ee-EeehhhhcCcCccceeeecccccccchhhc
Q 001910 893 ITLEELDDG-------------SVLLRLAHLYEEG--E--DAEYST-LA-KVELKKMFKGKSIKQLKEMSLSANQEKLEM 953 (997)
Q Consensus 893 ltl~~~~~~-------------~illRl~~~~~~~--~--~~~~s~-~~-~v~l~~lf~~~~v~~~~E~sLt~~~~~~~~ 953 (997)
+|||++... .||+|.+ ++|+ . +..++. .. .|+|.+||.++.+..+++||||..++..+|
T Consensus 942 v~lrt~~~~~~~~~~~~~~~~~~~l~r~~--~d~~~~~~~~~~c~~~~~~~~~~~~lf~~l~~~~~~~tsl~~~~~~~~~ 1019 (1050)
T PLN02701 942 VNFKVPRPSKYSQQEAEDPRFGLLLQRRG--WDSSYCRKGGTQCTTLANEPVNLFDMFKDLAVSKVKATSLNLLHDDAEM 1019 (1050)
T ss_pred EEeeccCCcccccccCCCccEEEEEEecc--cCcccccCCCccCcccCCcccchhhhhcccceeeeecccccccccchhh
Confidence 999976432 2788877 4442 1 122221 22 399999999999999999999999976654
Q ss_pred cceeeeeeCCCCCcCCCCCCCCCCCCCceEEecCCceeEEEEEC
Q 001910 954 KKMTWKVEGESGKTHSPVRGGPLDASTLVVELGPMEIRTFLLKF 997 (997)
Q Consensus 954 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~v~l~P~eIrTf~i~~ 997 (997)
.. +...-+ . .++...|.|+||||+||+++|
T Consensus 1020 ~~--~~~~~~----------~--~~~~~~i~l~pmei~~~~~~~ 1049 (1050)
T PLN02701 1020 LG--YRKQAG----------S--AAQEGIVLISPMEIQAYKLDL 1049 (1050)
T ss_pred cc--cccccc----------c--cCCccceeeccceeeeEEEec
Confidence 21 111110 0 123457999999999999986
No 3
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.8e-156 Score=1314.94 Aligned_cols=891 Identities=30% Similarity=0.492 Sum_probs=726.9
Q ss_pred ecCCCCccCCceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhc
Q 001910 30 YNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQ 109 (997)
Q Consensus 30 ~~~~~~~~~~~~~VhlvpHSH~D~gWl~t~~ey~~g~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~ 109 (997)
|+...+....+|+|++|||||+||||++||++||+ .+.++||++++..|.++|++||+|+|++||.+||+.+
T Consensus 152 yd~~~~~~~~~LkvfVvPHSHnDPGW~~Tf~~Yy~--------~~tr~Il~~~v~~L~e~~~~~FIwaEiS~~~~ww~~~ 223 (1129)
T KOG1958|consen 152 YDPKKWDKEPFLKVFVVPHSHNDPGWIKTFEEYYQ--------RQTRHILNNMVNKLSEDPRMKFIWAEISFLERWWDDA 223 (1129)
T ss_pred cChhhcccccceEEEEeeccCCCcchhhhHHHHHH--------HHHHHHHHHHHHHhhhCcccchhhhhHHHHHHhhhhc
Confidence 76666655566999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcC
Q 001910 110 SPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELG 189 (997)
Q Consensus 110 ~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G 189 (997)
+|+.+++||+||++||||||+|||||||||.+||.++|+|+++||+||+.++|++|+++|.|||||||++||+||+ .+|
T Consensus 224 ~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~igv~P~s~WaiDPFG~S~TmpYLL~-~ag 302 (1129)
T KOG1958|consen 224 SPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIGVTPQSGWAIDPFGYSSTMPYLLR-RAG 302 (1129)
T ss_pred ChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCCCCCCcccccCCCCCCcchHHHHh-hcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred CcEEEEeccChHHHHhhhccCCeeEEEecCCCCCCCCceEEeecCCC-CCCCC----------CCCcccCCC---CCCcc
Q 001910 190 FDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPPS----------GFHFELTDD---FDPVQ 255 (997)
Q Consensus 190 ~~~~~~~Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~I~t~~~~~~-Y~~p~----------~f~f~~~~~---~~p~~ 255 (997)
|++++|+|+||..|..++.+|.+||+||+.++..+.++||||+||++ |+.|+ +|||.+.++ .|||.
T Consensus 303 ~~~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~tHmMPFysYDIphTCGPdP~ICCqFDFkRmpg~~~~Cpw~ 382 (1129)
T KOG1958|consen 303 FENMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLLTHMMPFYSYDIPHTCGPDPKICCQFDFKRMPGGGCECPWG 382 (1129)
T ss_pred chhHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchheeecccccccCCCccCCCCceeeeeecccCCCCCcCCCCC
Confidence 99999999999999999999999999999998888899999999985 87663 788988743 68996
Q ss_pred CCC-CCCcccHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCccchHHH---HHHHHHHHHHHhcCC--ceeEEEcChh
Q 001910 256 DNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESW---FKQMDKLIHYVNKGG--RVNALYSTPS 329 (997)
Q Consensus 256 ~~~-~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~---~~~~~~li~~~N~~~--~~~i~~sT~~ 329 (997)
..| .|++.||++||+.+++|++++++.|++|.+|+|.||||+|..-.+| |.|+.+|+++||+.. ++.++|+|++
T Consensus 383 vpP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LFD~iNs~~~~nv~aqFGTls 462 (1129)
T KOG1958|consen 383 VPPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLFDHINSRPLLNVQAQFGTLS 462 (1129)
T ss_pred CCCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHHHHHhcccccceeeecCCHH
Confidence 554 5899999999999999999999999999999999999999987666 999999999999864 7889999999
Q ss_pred hHHHHHHhc----C---CCCCCccCCCccccccCCCcceeeeecccchhhHHHHhhhHHHHHHHHHHhhC-------C--
Q 001910 330 LYTEAKNAA----N---GPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAG-------K-- 393 (997)
Q Consensus 330 ~Yf~~v~~~----~---~~~p~~~gDf~py~~~~~~yWtG~yTSrp~~K~~~R~~e~~L~~ae~l~~l~~-------~-- 393 (997)
|||+++++. + ..+|+++||||+|||+..+||+|||||||++|++.|.+|++||+||++.+++. .
T Consensus 463 DYF~al~k~~~e~~kg~~~FPtlSGDFFtYaDr~d~YWSGYyTSRPFyK~ldRvLeh~lR~AEIl~s~a~~~~~r~~~~~ 542 (1129)
T KOG1958|consen 463 DYFDALDKAYSERGKGQEPFPTLSGDFFTYADRDDHYWSGYYTSRPFYKRLDRVLEHYLRSAEILFSLALAHAHRVGLAQ 542 (1129)
T ss_pred HHHHHHHHhhccccCCCCCCcccccCceeeecccCccceeeeecchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhh
Confidence 999999875 1 34799999999999999999999999999999999999999999999998641 1
Q ss_pred CCCC---CchHHHHHHHHhhccccCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCCC-CCcccc
Q 001910 394 KSPG---PTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPA-STFSQC 469 (997)
Q Consensus 394 ~~~~---~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~-~~~~~~ 469 (997)
..+. ..+.++||+|+++|||||||||||++|+.||.+||..+...++.++.+++..|+..........+. ..++.-
T Consensus 543 r~~~~~~~~L~~ARRnL~LFQHHDaITGTaK~~Vv~DYg~rl~~Sl~~~~~v~~~~~~~Ll~~~~~~y~~~~~~~~~emd 622 (1129)
T KOG1958|consen 543 RIEESNYELLTAARRNLGLFQHHDAITGTAKDAVVVDYGQRLHESLVNLQIVLENALELLLGKDSETYNSDPSHSFIEMD 622 (1129)
T ss_pred hcchhHHHHHHHHHHhhhhhhcccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCceehh
Confidence 1222 246788999999999999999999999999999999999999999999999998765311111111 111111
Q ss_pred cc-cccccCCCCC-CCCCCCCeEEEEEEcCCCcceeEEEEEEEcCCcEEEEcCCCCeeeEEEeeccccccccchhhhhhc
Q 001910 470 PL-LNISYCPPTE-KGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAY 547 (997)
Q Consensus 470 ~~-ln~s~~~~~~-~~~~~~~~~~v~v~Npl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~ 547 (997)
.. .+.+.-|... ..+ ...+..|++||||.++|.++|+|.|+.+.|.|.+..|++|++||.|+|..+.+.
T Consensus 623 ~~r~~~~~~pek~~~~~-~~~~~~vvlfN~l~q~R~evv~i~V~sp~V~V~~d~g~pv~~Qispvw~~~~tk-------- 693 (1129)
T KOG1958|consen 623 DIRDSEDSLPEKTVIGL-SSGPRSVVLFNPLEQEREEVVTIRVNSPEVSVLDDGGVPVEAQISPVWQDTKTK-------- 693 (1129)
T ss_pred hcccCCCcCcccceeec-cCCCceEEEeccchhhhhccEEEEecCCeeEEEcCCCceeeEeeccceeccccc--------
Confidence 10 0111112100 112 233468999999999999999999999999999999999999999999632210
Q ss_pred cCCCCCCCCcEEEEEEEeeCCCceEEEEEEecCCccccc-cc---ccccc-------CCCCCCceEecCCeEEEEEEcCC
Q 001910 548 LGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRR-KG---FFLAA-------DSPQDKTVEVGPGNLKMSFSRTT 616 (997)
Q Consensus 548 ~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~~~~~~-~~---~~~~~-------~~~~~~~~~ieN~~~~v~~d~~~ 616 (997)
....+.|+|.|.++|||||..+|++..+....... .+ .+... .....+-.+++|++..+.||+++
T Consensus 694 ----~~~~~~~~l~f~a~vpplgl~v~~~~~~~~~~~~~l~s~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~l~fd~~~ 769 (1129)
T KOG1958|consen 694 ----TIKPGSYRLSFKATVPPLGLMVLRIDSGGLTEHAKLPSKDTSFPAWDLGSSSTIGDSRELSTLRNEYFELRFDPET 769 (1129)
T ss_pred ----eeecceeEEEEEEecccceeeEEEeeccCcccccccccCCCCcccCCCccceeecCccccceeeccceeEEecccc
Confidence 01224799999999999999999998763221111 00 11000 01111235899999999999999
Q ss_pred CcEEEEEecCCceeeeeeeEEEEeecccCCCCCCcceEccCCCc-ccccCCCccEEEEecCceEEEEEEecc---eEEEE
Q 001910 617 GQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQ-PNVVSRSVPIKIIRGPMVDEVHQQFNS---WIYQV 692 (997)
Q Consensus 617 G~l~si~dk~~g~~~~~~~~f~~Y~~~~~~~~sgAY~F~P~~~~-~~~~~~~~~i~i~~Gpl~~~v~~~~~~---~i~q~ 692 (997)
|+|+++..+.++....+...|..|.....++.||||.|.|++++ |+..-....|.+ +|||+++|.+...+ ...|.
T Consensus 770 G~i~~~~~~~D~~~~~~q~~f~~y~~~~~~~~sgaylf~p~G~a~~~i~~~~p~v~v-~g~L~qev~~~~~~v~~~~~~~ 848 (1129)
T KOG1958|consen 770 GTIKSINSLSDNKHFESQVSFSNYGERISGDESGAYLFLPDGNAKPIIELQWPHVRV-KGPLVQEVSQFLKNVLHRLSQN 848 (1129)
T ss_pred chhhhhhhcccCCCcccceeeccccccccCCCCceEEEccCCCCCCceecCCCeEEe-ecceeeeeccccchHHHhchhh
Confidence 99999988777887788888888876555788999999999985 544334456667 99999999987643 23378
Q ss_pred EEEeecCCceeEEEEECCeeccCCCCcEEEEEEEeeccCCcEEEEccCCccccccccccccccccCCCCCcccceEeece
Q 001910 693 TRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNL 772 (997)
Q Consensus 693 vrLy~~~~~ie~e~~v~~ip~~d~~~~e~~~rf~t~i~s~~~fytDsnG~~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s 772 (997)
+++|.|. .+|++..|+ +.+..+.|+++||.|++++...||||+||+||+||.+. .+.|+++|||||++
T Consensus 849 ~~~~~G~-~vei~~~vd---i~~~~n~Ela~R~st~vds~~~FyTDlnG~Q~~kR~~~--------~KlPlQaNyYPmpt 916 (1129)
T KOG1958|consen 849 VRGYSGE-EVEISNSVD---IRKEDNTELAMRFSTDVDSGDLFYTDLNGMQMIKRRRL--------DKLPLQANYYPMPT 916 (1129)
T ss_pred eeccCCc-ceeeeceee---cccccchhhhhhhhhcccCCceeeeccchhhhhhhhhc--------ccCcccceeecccc
Confidence 8999986 677776664 33457899999999999999999999999999999875 47899999999999
Q ss_pred eEEEeeCCceEEEEeCCCceeeeccCcEEEEEEec--------CCCCccccccccccCCCCceEeeeEEEeccccCccch
Q 001910 773 GIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHR--------GVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGAR 844 (997)
Q Consensus 773 ~~~I~D~~~~ltvltdr~~G~~s~~~G~ielmL~R--------Gvge~l~e~~~~~~~~~gl~~~g~~~l~l~~~~~~~~ 844 (997)
++||+|.+.+|++++.++.|++|+.+|+||||++| |+|+++.|+. ++...|+|++++......
T Consensus 917 ~a~Iq~~~~RlsihS~q~lGvssL~sG~iEIm~DRrL~~DD~rGLgqGv~DNk---------~t~~~frlv~e~~~s~~~ 987 (1129)
T KOG1958|consen 917 AAFIQDAKQRLSIHSAQSLGVSSLESGQIEIMLDRRLNQDDGRGLGQGVIDNK---------PTDMKFRLVLESLNSAQD 987 (1129)
T ss_pred eeeeecCCceEEEEeecccCccccccceEEEEecccccCCCCccccccccccc---------hhhheeeeeecccccccC
Confidence 99999999999999999999999999999999999 9999988774 355689999987754221
Q ss_pred ------------hcccchhhhcccceeeeeccccccccccccCccccCccCCCCCCcceEEEeeecCCC--------cEE
Q 001910 845 ------------WRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPLNVALITLEELDDG--------SVL 904 (997)
Q Consensus 845 ------------~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~s~l~~~~~lp~nv~lltl~~~~~~--------~il 904 (997)
.-+...+.+++|+..++..... +. .....+.++.. +|||++|++|++++.+. .||
T Consensus 988 p~e~~~~~~ps~~ah~a~~~l~yP~~~f~~~~pk--~i-~~~g~~~~~~~--~lpcDl~lvt~rtl~~~~~~~~~~~lil 1062 (1129)
T KOG1958|consen 988 PTENSRVSYPSLAAHLASQSLNYPLMKFIYAEPK--KI-EDQGIFEPLNL--SLPCDLHLVTFRTLESSKAAEKRAALIL 1062 (1129)
T ss_pred chhcCCCCChhhhhhcccceecCCchhhcccCCC--Ch-hhccccccccC--CCccceeEEEeeeccCcccccccceeee
Confidence 1234567789998877632221 11 11333455554 89999999999999754 377
Q ss_pred EEEecccccCC-CCCcceeeEeehhhhcCcCccceeeecccccccchhhccceeeeeeCCCCCcCCCCCCCCCCCCCceE
Q 001910 905 LRLAHLYEEGE-DAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVEGESGKTHSPVRGGPLDASTLVV 983 (997)
Q Consensus 905 lRl~~~~~~~~-~~~~s~~~~v~l~~lf~~~~v~~~~E~sLt~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~v 983 (997)
+|-+ .+|+. +...+...++++.+|+.. +.+++.|+|++.+..... .+ ....
T Consensus 1063 ~R~~--~~c~~~~~g~c~~~ki~~~~ll~~--~~~v~~tsLs~l~~~~~~--------------------~~----~~~~ 1114 (1129)
T KOG1958|consen 1063 HRHA--TDCRSQKKGTCGQLKISVMDLLIK--AKSVKKTSLSLLQEVGGI--------------------IG----VEEQ 1114 (1129)
T ss_pred eecc--cccccccccccccccCcHHHHHHH--HHhhchhhHHhhhhcccC--------------------CC----cccc
Confidence 7864 55532 111122457888888885 889999999998864321 11 1245
Q ss_pred EecCCceeEEEEEC
Q 001910 984 ELGPMEIRTFLLKF 997 (997)
Q Consensus 984 ~l~P~eIrTf~i~~ 997 (997)
.++||||++|++.+
T Consensus 1115 ~~~pme~~~~l~~~ 1128 (1129)
T KOG1958|consen 1115 ELSPMEISAFLTSL 1128 (1129)
T ss_pred cccccccccccccc
Confidence 66999999998753
No 4
>PRK09819 alpha-mannosidase; Provisional
Probab=100.00 E-value=1e-106 Score=1008.87 Aligned_cols=817 Identities=16% Similarity=0.243 Sum_probs=611.2
Q ss_pred ceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEE--echHHHHHHHhhcChHHHHHH
Q 001910 40 KLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVF--AEMAFFHRWWVGQSPEIQEQV 117 (997)
Q Consensus 40 ~~~VhlvpHSH~D~gWl~t~~ey~~g~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~--~e~~~~~~w~~~~~p~~~~~v 117 (997)
+++||+|||||||+|||||++++.. ++.++|++|+++|+++|+++|.+ ++++++ +||.+.+|+.+++|
T Consensus 3 ~~~v~~v~HtH~D~~Wl~~~~~~~~---------~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l-~~~~~~~Pe~~~~i 72 (875)
T PRK09819 3 KSKVHIVPHMHWDREWYFTTERSRI---------LLVNNMEEILDRLEQDNDYKYYVLDGQTSLL-EDYLAVKPEDKERV 72 (875)
T ss_pred ceEEEEeCCCCCChhhcCChHHhHH---------HHHHHHHHHHHHHHhCCCcceEEEchhHHHH-HHHHHhChHHHHHH
Confidence 4789999999999999999999985 88899999999999999999764 355566 55558999999999
Q ss_pred HHHHHcCCeEEEceee-eeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEe
Q 001910 118 RKLVDASQLEFVNGGW-CMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFA 196 (997)
Q Consensus 118 k~lV~~GrlE~v~GgW-v~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~~~~~~~ 196 (997)
|+||++||| ++ ||| ||+||+++||||+||||++|++|+ ++||..|++||+|||||||++|||||+ +|||+++++|
T Consensus 73 k~lV~~Grl-~~-G~W~v~~D~~l~sgEsliRqll~G~~~~-~~fG~~~~vgwlpD~FG~s~~lPqIl~-~~Gi~~~~~w 148 (875)
T PRK09819 73 KKLVQAGKL-II-GPWYTQTDQLVVSGESIVRNLLYGIRDC-REFGEPMKIGYLPDSFGQSGQMPQIYN-GFGITRTLFW 148 (875)
T ss_pred HHHHHcCCE-eE-CcEEeecccccCCHHHHHHHHHHHHHHH-HHcCCCCceeeecCCCCCcHHHHHHHH-hCCCCeEEEE
Confidence 999999999 44 889 899999999999999999999998 799999999999999999999999998 9999999999
Q ss_pred ccChHHHHhhhccCCeeEEEecCCCCCCCCceEEeecCCCCCCCCCCCcccCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 001910 197 RIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAA 276 (997)
Q Consensus 197 Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~I~t~~~~~~Y~~p~~f~f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~ 276 (997)
|+..+ +...+..+|+|+|+| ||+||||++|.+|+.+..+ | ....+++++++.+++.+
T Consensus 149 r~~~~----~~~~~~~~F~W~g~D----Gs~V~t~~~~~~Y~~g~~~---------~------~~~~~~~~~~~~~~~~~ 205 (875)
T PRK09819 149 RGVSD----RHGTDKTEFLWQSDD----GSEVLAQQLPLGYAIGKYL---------P------EDEEELKKRLDEYFGVL 205 (875)
T ss_pred ecccc----cccCCCceEEEECCC----CCeEEEEECccccccCCCC---------C------cCHHHHHHHHHHHHHHH
Confidence 97532 111346699999999 9999999999999764321 1 12357778888887777
Q ss_pred HHhccccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHhcC-CceeEEEcChhhHHHHHHhcCCCCCCccCCCcc-ccc
Q 001910 277 LTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKG-GRVNALYSTPSLYTEAKNAANGPWPLKTDDYFP-YAD 354 (997)
Q Consensus 277 ~~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~~-~~~~i~~sT~~~Yf~~v~~~~~~~p~~~gDf~p-y~~ 354 (997)
++++ .++++|+|+|+|+.+.. ++|.++|+.+|+. +.+++++||+++||+++++....||+++|||++ +.
T Consensus 206 ~~~~---~~~~~l~~~G~d~~p~~-----~~~~e~i~~~~~~~~~~~~~~st~~~yf~~l~~~~~~lp~~~GEl~~~~y- 276 (875)
T PRK09819 206 EKKS---STKNILLPNGHDQMPLQ-----KNLFEVMDKLNEIYPEREFVISRFENVFEKLEKQRDNLPTLKGEFIDGKY- 276 (875)
T ss_pred hhcC---CCCcEEEecCCCCCccc-----ccHHHHHHHHHhhCCCCcEEECCHHHHHHHHHhhcCCCCeeeeecCCCcc-
Confidence 6654 68999999999987655 6788888888865 568999999999999999877889999999983 22
Q ss_pred cCCCcceeeeecccchhhHHHHhhhHHHH-HHHHHHhh---CCCCCCCchHHHHHHHHhhccccCCCCCCcccchHHHHH
Q 001910 355 RRNAYWTGFFTSRPALKGYVRVLSGFYLA-SRQLEFLA---GKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAK 430 (997)
Q Consensus 355 ~~~~yWtG~yTSrp~~K~~~R~~e~~L~~-ae~l~~l~---~~~~~~~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~ 430 (997)
..+|+||||||+.+|+++|++|++|+. +|.|.+++ |..|+...++++|+.|+++||||+||||++++|++|+..
T Consensus 277 --~~~HrG~~TSr~~iK~~nr~~E~~L~~~~E~l~~la~~~g~~yp~~~l~~~Wk~ll~nq~HD~i~G~sid~V~~d~~~ 354 (875)
T PRK09819 277 --MRVHRSIFSTRMDIKIANARIENKIVNVLEPLASIAYSLGFEYPHGLLEKIWKEMFKNHAHDSIGCCCSDTVHRDIVA 354 (875)
T ss_pred --ccccCCccccHHHHHHHHHHHHHHHHHHhchHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcccccCChHHHHHHHH
Confidence 245699999999999999999999974 88888875 456788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccccccccCCCCCCCCCCCCeEEEEEEcCCCcceeEEEEEEE
Q 001910 431 RLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPV 510 (997)
Q Consensus 431 rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~v~Npl~~~r~~~V~i~v 510 (997)
|+.++.+.++.+++.+++.|+.... .++...++||||++|+|+++|++++
T Consensus 355 r~~~~~~~~~~l~~~~l~~l~~~i~------------------------------~~~~~~~~vfN~l~~~r~~~v~i~~ 404 (875)
T PRK09819 355 RYKLAEDLADNLLDFYMRKIADNMP------------------------------QSDADKLTVFNLLPYEREEVINTTV 404 (875)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------------------------------cCCCCEEEEEcCCCccceeEEEEEE
Confidence 9999999999999999999986431 1334678999999999999998876
Q ss_pred --cCCcEEEEcCCCCeeeEEEeeccccccccchhhhhhccCCCCCCCCcEEEEEEE-eeCCCceEEEEEEecCCcccccc
Q 001910 511 --NDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQV-TVPPLGWNTYFISRAAGKVKRRK 587 (997)
Q Consensus 511 --~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~-~vP~lG~~~y~i~~~~~~~~~~~ 587 (997)
+...+.+.|.+|++|++|+.................. +. ......+.+.|.+ +||||||++|.+...+.....
T Consensus 405 ~~~~~~~~~~d~~g~~v~~~v~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~i~f~~~~vP~lG~~~~~i~~~~~~~~~-- 480 (875)
T PRK09819 405 YLPASQFTLRDDRGNPLPYTIREKRDIDPGLLDRQIVHY-GN-YDPFMEFDIQINVQILPAMGYRTLYIELNEEGNVI-- 480 (875)
T ss_pred EeccCCEEEECCCCCEeeEEEeeccccccchhhcceecc-CC-CCceEEEEEEEEECCCCCcccEEEEEEeCCccccc--
Confidence 5678899999999999999855432111000000000 00 0001246788885 999999999998765332111
Q ss_pred ccccccCCCCCCceEecCCeEEEEEEcCCCcEEEEEecCCceeeeeeeEEEEeecccCCCCCCcceEccCCCc-ccccCC
Q 001910 588 GFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQ-PNVVSR 666 (997)
Q Consensus 588 ~~~~~~~~~~~~~~~ieN~~~~v~~d~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~~~~~sgAY~F~P~~~~-~~~~~~ 666 (997)
.........|||++|+|+|| ++|.| +|+||++|+++. .+..|++ .++.||+|+|.|...+ ......
T Consensus 481 ------~~~~~~~~~ieN~~~~v~i~-~~G~l-~l~dk~~gr~~~---~~~~~~d--~~d~gD~yd~~p~~~d~~~~~~~ 547 (875)
T PRK09819 481 ------EPKSSAEGIIENEFYQITLN-ENGTL-TIVDKKSGKTYD---RQLIIEE--NGDDGDEYDYSPPREDWVITSAE 547 (875)
T ss_pred ------cccccccceEecCcEEEEEe-cCCcE-EEEECCCCcEEe---ceEEEEe--cCcCCCCcccCCCCCCCEEeccC
Confidence 01233457899999999999 78999 599999999874 3444544 3788999999987654 222222
Q ss_pred -CccEEEEecCceEEEEEEe------------------cceEEEEEEEeecCCceeEEEEECCeeccCCCCcEEEEEEEe
Q 001910 667 -SVPIKIIRGPMVDEVHQQF------------------NSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTA 727 (997)
Q Consensus 667 -~~~i~i~~Gpl~~~v~~~~------------------~~~i~q~vrLy~~~~~ie~e~~v~~ip~~d~~~~e~~~rf~t 727 (997)
...+.++.||+++++++.+ .+.++|+++|++++++|+|+++|++. ..+|.+++.|++
T Consensus 548 ~~~~~~v~~~~~~~~~~i~~~~~~p~~~~~r~~~~~~~~~~i~~~i~L~~~s~~i~~~~~vdw~----~~~~~Lrv~fp~ 623 (875)
T PRK09819 548 AVPSVEISHSAWQSRAVIRYRLAVPKNLEERAAGQKTGRMPVKLVVTLSKNSRRIDFDVNLDNQ----ADDHRLRVLFPT 623 (875)
T ss_pred CcceEEEEEcCCeEEEEEEEEEeCCcChhhHhhccccceEEEEEEEEEecCCCEEEEEEEEecc----ccceEEEEEccC
Confidence 3467788899988887664 24788999999999999999999764 568899999999
Q ss_pred eccCCcEEEEccCCcccccccccc--ccccccCCCCCcccceEeeceeEEEeeCCceEEEEeCCCceeeeccC--cEEEE
Q 001910 728 NMVTEKVFYTDSNGRDFLKRVRDY--RADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKD--GQVEI 803 (997)
Q Consensus 728 ~i~s~~~fytDsnG~~~ikR~~~~--r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~ltvltdr~~G~~s~~~--G~iel 803 (997)
+|.++..+|..++| +++|+++. .++|+.+.++..+.+-||+.++++|.|++.+++|+||+++|.....+ ++|.|
T Consensus 624 ~i~~~~~~~d~~fG--~i~Rp~~~~~~~~W~~~~~~e~p~~~~~~~~~v~ls~~~~Gvall~dg~~ey~v~g~~~~~i~L 701 (875)
T PRK09819 624 EIASKFSLADQQFG--SITRPVNDPAMDVWEQEGWQEAPISIEPMQSFVALHDERHGVAVFTEGVREYEIIGENYDTIAL 701 (875)
T ss_pred CCCCCceEcCCCce--EEECCCcCccccccccccceeCCCCChhhhceEEEecCCceEEEECCCcceEEEecCCCCeEEE
Confidence 99998888888777 99999765 36899888866566789999999999999999999999999655433 38999
Q ss_pred EEecCCCCcccccc-----------cc--ccCCCCceEeeeEEEeccccCccc--hhcccchhhhcccceeeeeccc---
Q 001910 804 MLHRGVGEALDESV-----------CV--RDNCEGLTVRGNYYLSVNQLGAGA--RWRRTTGQEVYSPLLLAFTQEK--- 865 (997)
Q Consensus 804 mL~RGvge~l~e~~-----------~~--~~~~~gl~~~g~~~l~l~~~~~~~--~~~r~~~~~l~~p~~~~~~~~~--- 865 (997)
+|+|++|+.=.+.- .. ..+|.|-. .|.+.|....... ....+.+.+++.|+.++.....
T Consensus 702 TLlRs~g~lgk~~l~~rpgr~sG~~~ptP~aq~~G~h---~f~y~l~ph~g~~~~~~~~~~a~~~n~p~~~~~~~~~~~~ 778 (875)
T PRK09819 702 TLFRGVGLLGKEDLLYRPGRPSGIKIPTPDSQLLGEL---SFRFSLTSYEGTFDEAGVAQQAKEYLTPVQCYNKIPFLNM 778 (875)
T ss_pred EeecccCccCCCccccCCCcccCCccCCChHHhcCce---EEEEEEEEccCCcchHHHHHHHHHhccCcceeeccccccc
Confidence 99997765211100 00 01122211 2222232221111 1123467889999876531100
Q ss_pred -cccccccccCccccCccCCCCCCcceEEEeeecCCC-cEEEEEecccccCCCCCcceeeEeehhhhcCcCccceeeecc
Q 001910 866 -LETWTESHLTKSTAMESDYSLPLNVALITLEELDDG-SVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQLKEMS 943 (997)
Q Consensus 866 -~~~~~~~~~~~~s~l~~~~~lp~nv~lltl~~~~~~-~illRl~~~~~~~~~~~~s~~~~v~l~~lf~~~~v~~~~E~s 943 (997)
..........++|.+. -.+.++.+-++|+.+++ .++||+ |+...... ..+.+.+ ...+..+.|++
T Consensus 779 ~~~~~~~~~~~~~s~~~---~~~~~i~~sa~K~aed~~~~ilRl---yn~~~~~~--~~~~l~~-----~~~~~~~~~~~ 845 (875)
T PRK09819 779 RLNDEEFTLPESYSLLK---MPPDGAVLSAVKKAEDRDGLILRF---FNPAESKT--CDATVAF-----SKEVKSLDETM 845 (875)
T ss_pred ccCcccCCCCcccccee---eCCCCEEEEEEEEeccCCCEEEEE---eCCCCCcc--cccccee-----ccchhheeecc
Confidence 0000011122333332 12458999999998865 499998 44421110 0111111 22455667777
Q ss_pred cccccchhhccceeeeeeCCCCCcCCCCCCCCCCCCCceEEecCCceeEEEEE
Q 001910 944 LSANQEKLEMKKMTWKVEGESGKTHSPVRGGPLDASTLVVELGPMEIRTFLLK 996 (997)
Q Consensus 944 Lt~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~v~l~P~eIrTf~i~ 996 (997)
|-.... .+. .+.. ...++|+|.||+|++|.
T Consensus 846 l~E~~~-~~~---------------------~~~~-~~~~~~~p~eI~T~~i~ 875 (875)
T PRK09819 846 LDEKIT-TEE---------------------NQGS-NLSGELKPCQVQTFLVK 875 (875)
T ss_pred cccccc-ccc---------------------cccc-cccccccCCeeEEEEeC
Confidence 776432 110 0001 11368999999999974
No 5
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.1e-80 Score=670.28 Aligned_cols=699 Identities=18% Similarity=0.241 Sum_probs=543.6
Q ss_pred CceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhcChHHHHHHH
Q 001910 39 GKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVR 118 (997)
Q Consensus 39 ~~~~VhlvpHSH~D~gWl~t~~ey~~g~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk 118 (997)
..-+||.|+|.|+|.+|||+|.|..+ +..+...+.++.|+++|+++|+.++..-| +|.++.+|+.+++++
T Consensus 279 s~~nv~aiGhCHIDTAWLWPFaETrR---------KivRSW~tq~~lMdR~PEy~FvcSQAqQ~-~WlkedhP~~f~kl~ 348 (1078)
T KOG4342|consen 279 SQHNVHAIGHCHIDTAWLWPFAETRR---------KIVRSWVTQLQLMDRNPEYIFVCSQAQQL-EWLKEDHPGLFSKLQ 348 (1078)
T ss_pred cccceeeeccccccchhhcChHHHHH---------HHHHHHHHHHhHHhhCcceeEehhhHHHH-HHHhhhChhHHHHHH
Confidence 46789999999999999999999995 88889999999999999999998876666 899999999999999
Q ss_pred HHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEecc
Q 001910 119 KLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARI 198 (997)
Q Consensus 119 ~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~~~~~~~Ri 198 (997)
+.+..||+-.|||.||++|.++|+|||||||++.|++|+.++||...+.-|+||+||+|+|+|||.+ .+||+.++.+++
T Consensus 349 e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG~~c~~FWLPDTFGYSsQ~PQicr-lcGidrFLTQKL 427 (1078)
T KOG4342|consen 349 EFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFGKMCSEFWLPDTFGYSSQLPQICR-LCGIDRFLTQKL 427 (1078)
T ss_pred HHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhhhhhcceeccccccccchhhHHHH-hhcHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred ChHHHHhhhccCCeeEEEecCCCCCCCCceEEeecCCC-CCCCCCCCcccCCCCCCccCCCCCCcccHHHHHHHHHHHHH
Q 001910 199 DYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAAL 277 (997)
Q Consensus 199 ~~~~~~~~~~~~~~eF~W~g~d~~~~gs~I~t~~~~~~-Y~~p~~f~f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~~ 277 (997)
.|+..+.+++. .|.|.|.| ||+|++|+-|.. |... -++ +..+..+.
T Consensus 428 SWNniNSFPhs---TFnW~glD----GSqvl~HmPPgntYtad----------------------~~v----~dVL~tv~ 474 (1078)
T KOG4342|consen 428 SWNNINSFPHS---TFNWEGLD----GSQVLVHMPPGNTYTAD----------------------GSV----EDVLKTVA 474 (1078)
T ss_pred cccccCcCCcc---ceeeeecc----CceEEEecCCCCccccc----------------------CcH----HHHHHHHH
Confidence 99999999887 99999999 999999986653 5431 222 23333333
Q ss_pred HhccccCCCeEEEeecCCCCccchHHHHHHHHHHHH---HHhcCC-ceeEEEc-ChhhHHHHHHhc---CCCCCCccCCC
Q 001910 278 TQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIH---YVNKGG-RVNALYS-TPSLYTEAKNAA---NGPWPLKTDDY 349 (997)
Q Consensus 278 ~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~---~~N~~~-~~~i~~s-T~~~Yf~~v~~~---~~~~p~~~gDf 349 (997)
+....-+.++=|+.+|-.. +.++|+-++++||.+ .-|..| -++++.+ |+++||+++.+. +..||+|.||+
T Consensus 475 qnk~~~~~~~gl~lfG~GD--GGGGPT~eML~klrR~r~~~Nt~G~lP~vqlg~tvdeffd~ilkrtnqg~~LptW~GEL 552 (1078)
T KOG4342|consen 475 QNKDKGRANHGLFLFGFGD--GGGGPTQEMLDKLRRIRSLSNTDGVLPRVQLGITVDEFFDAILKRTNQGHDLPTWVGEL 552 (1078)
T ss_pred hcCCccccCcceEEEEecC--CCCCCcHHHHHHHHHhhcccccCCcccceeecCCHHHHHHHHHhhhccCCcccccchhe
Confidence 3333335566666776321 234677788888765 334455 6899999 999999999875 45699999999
Q ss_pred ccccccCCCcceeeeecccchhhHHHHhhhHHHHHHHHHHhhCC-----CCCCCchHHHHHHHHhhccccCCCCCCcccc
Q 001910 350 FPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGK-----KSPGPTTSALGDALGIAQHHDAVTGTAKQHT 424 (997)
Q Consensus 350 ~py~~~~~~yWtG~yTSrp~~K~~~R~~e~~L~~ae~l~~l~~~-----~~~~~~~~~l~~~l~~~QhHDaItGTs~~~V 424 (997)
| .++++|.|||++.+|+..|.+|..|+.+|.+.+++.. .||...++.||+.++++|+||.++|++++-|
T Consensus 553 y------fEfHrGTYTtqAq~KKlmR~~Ei~LHD~E~~sslas~~s~dy~YP~~qlq~LWr~~LLcQFHDVlpGSCIeMV 626 (1078)
T KOG4342|consen 553 Y------FEFHRGTYTTQAQIKKLMRECEIILHDVELLSSLASARSADYLYPAAQLQHLWRLLLLCQFHDVLPGSCIEMV 626 (1078)
T ss_pred E------EEEecCceeeHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHhcccCCcHHHHHH
Confidence 8 6899999999999999999999999999999998643 3566778999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccccccccCCCCCCCCCCCCeEEEEEEcCCCcceeE
Q 001910 425 TNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTD 504 (997)
Q Consensus 425 ~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~v~Npl~~~r~~ 504 (997)
+++.+-.+......++.++..+++.|.... +++ -.+++.|+|+|.|.+
T Consensus 627 ykeA~p~~~~v~k~~~tLl~~a~~~L~as~-------------------------------s~k-e~L~~~nTLpW~~~~ 674 (1078)
T KOG4342|consen 627 YKEAMPHYEDVRKHGNTLLSAAAAALCASE-------------------------------SGK-EGLLIVNTLPWKRIE 674 (1078)
T ss_pred HHhhhhHHHHHHHhhHHHHHHHHHHHhcCC-------------------------------CCc-cceEEEeccccceee
Confidence 999999999999999999999998885321 122 246788999999999
Q ss_pred EEEEEEcCCcEEEEcCCCCeeeEEEeeccccccccchhhhhhccCCCCCCCCcEEEEEEEeeCCCceEEEEEEecCCccc
Q 001910 505 IIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVK 584 (997)
Q Consensus 505 ~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~~~~ 584 (997)
++.++-+..... .. ..++|.+|++... ++..
T Consensus 675 v~~~~kp~k~~~----------~e----------------------------------~c~~~g~~ta~vt-----~~~~ 705 (1078)
T KOG4342|consen 675 VMALPKPGKAHS----------LE----------------------------------LCTVPGMGTAPVT-----PPTS 705 (1078)
T ss_pred eecccCCCCcee----------EE----------------------------------EeccCCccccCCC-----CCCC
Confidence 877664432111 10 1345555544311 0000
Q ss_pred cccccccccCCCCCCceEecCCeEEEEEEcCCCcEEEEEecCCceeee---------eeeEEEEeecccCCCCCCcceEc
Q 001910 585 RRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVP---------IQQSFLWYGSMVDTQSSGAYIFR 655 (997)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~ieN~~~~v~~d~~~G~l~si~dk~~g~~~~---------~~~~f~~Y~~~~~~~~sgAY~F~ 655 (997)
+ +.. -...+.++|.|+.+||.++ .+|.|+||+|...|++.. -.++|..|++- +-.+.||+-.
T Consensus 706 p----~~~--yq~Dd~~~L~Ng~lrV~i~-p~G~itSl~d~~~grE~ld~~~Grn~~GaNQfVlfdD~--PL~WqAWDte 776 (1078)
T KOG4342|consen 706 P----VFV--YQTDDSVTLDNGILRVKID-PTGRITSLVDVASGREALDTAEGRNAVGANQFVLFDDV--PLYWQAWDTE 776 (1078)
T ss_pred c----eeE--EecCCeEEEECCEEEEEEC-CCCceeeeeehhcccchhcccccccccCcccEEEecCC--ccchhhhhhh
Confidence 1 000 1245678999999999999 579999999988888765 23789999853 6677888533
Q ss_pred cCCCcccccCC-CccEEE-EecCceEEEEEEe----cceEEEEEEEeecC-----CceeEEEEECCeeccCCCCcEEEEE
Q 001910 656 PNGAQPNVVSR-SVPIKI-IRGPMVDEVHQQF----NSWIYQVTRLYIDK-----EHAEVEYTIGPIPTEDSVGKEVISR 724 (997)
Q Consensus 656 P~~~~~~~~~~-~~~i~i-~~Gpl~~~v~~~~----~~~i~q~vrLy~~~-----~~ie~e~~v~~ip~~d~~~~e~~~r 724 (997)
-..-+.+++-+ ...+.| .+|+++..+.+.+ ++.++++|.|-.+. +.+.|.++|+ + ++.+|-+.+.
T Consensus 777 ~ysle~y~vl~k~k~v~v~~~g~lr~sv~v~~qISe~s~~k~~isL~~~~~~ak~~~V~f~teV~---W-he~~KFLKVE 852 (1078)
T KOG4342|consen 777 DYSLERYPVLGKAKTVAVGTEGGLRGSVWVLLQISENSRLKQEISLDVGCTDAKLPYVRFHTEVH---W-HEAHKFLKVE 852 (1078)
T ss_pred hhceecceecCCCceEEeecCCCcceEEEEEEEcCcccccceEEEEecccccccCCceeeEEEEe---e-hhcCceEEee
Confidence 21112233333 334665 7899988776654 56788999987665 6788888885 2 3568899999
Q ss_pred EEeeccCCcEEEEccCCccccccccccccccccCCCCCcccceEeeceeEEEeeCCceEEEEeCCCceeeeccCcEEEEE
Q 001910 725 MTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIM 804 (997)
Q Consensus 725 f~t~i~s~~~fytDsnG~~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~ltvltdr~~G~~s~~~G~ielm 804 (997)
|+.+|.|.-+.|..++| +.||+++|+++|+-+.+|.+.+.| ++..|-..|++|+||++|| .|.+.+-+.|.
T Consensus 853 FPv~irs~fAsYEtQFG--itkRPTHYNTSWDvAkFEVchhkf------aDySe~~~Gvs~LNDCKYG-fSthGnlmrLS 923 (1078)
T KOG4342|consen 853 FPVRIRSSFASYETQFG--ITKRPTHYNTSWDVAKFEVCHHKF------ADYSEHGFGVSLLNDCKYG-FSTHGNLMRLS 923 (1078)
T ss_pred ccccccccchhhhhhcc--cccCCccccccchhhHhHHHHhhh------hhhhhcccceeeecccccc-cccccceeeeh
Confidence 99999999999999888 999999999999999999999999 9999999999999999999 67899999999
Q ss_pred EecCCCCccccccccccCCCCceEeeeEEEec--cccCccc-hhcccchhhhcccceeeeeccccccccccccCccccCc
Q 001910 805 LHRGVGEALDESVCVRDNCEGLTVRGNYYLSV--NQLGAGA-RWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAME 881 (997)
Q Consensus 805 L~RGvge~l~e~~~~~~~~~gl~~~g~~~l~l--~~~~~~~-~~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~s~l~ 881 (997)
|+|..-.|=.-. ..|+|-+.+ -+...+. +..-+.+.++|+|.-+.....+. .....|..+.
T Consensus 924 LLRsPKaPDAhA-----------DmG~Hei~YA~yPH~g~lds~tv~aAh~fN~~fkl~lpa~~~-----an~d~~dafs 987 (1078)
T KOG4342|consen 924 LLRSPKAPDAHA-----------DMGRHEITYALYPHKGSLDSGTVQAAHSFNFPFKLALPAPSP-----ANADSWDAFS 987 (1078)
T ss_pred hhcCCCCCCccc-----------ccCcceEEEEeccCCCCCchhHHHHHHhcCCceeeccCCCCC-----CCCcccccee
Confidence 999654442211 123443333 3322211 11134678899998555433321 1123333332
Q ss_pred cCCCCCCcceEEEeeecCCC----cEEEEEeccccc
Q 001910 882 SDYSLPLNVALITLEELDDG----SVLLRLAHLYEE 913 (997)
Q Consensus 882 ~~~~lp~nv~lltl~~~~~~----~illRl~~~~~~ 913 (997)
.+=.+||.|-++|..+++ +|+||+ ||.
T Consensus 988 --vsgdpnViLs~iK~aE~~~~~~SivlRv---YEs 1018 (1078)
T KOG4342|consen 988 --VSGDPNVILSTIKQAESSPQRRSIVLRV---YES 1018 (1078)
T ss_pred --ecCCchHHHHHhhhhccCcccceEEEEe---hhh
Confidence 244579999999887643 699998 776
No 6
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=1.4e-59 Score=514.93 Aligned_cols=272 Identities=31% Similarity=0.509 Sum_probs=216.2
Q ss_pred EEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhcChHHHHHHHHHH
Q 001910 42 NVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLV 121 (997)
Q Consensus 42 ~VhlvpHSH~D~gWl~t~~ey~~g~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV 121 (997)
+||+|||||+|+||++|+++|. ..+.++|+++++.|+++|++||+++|+.++++ |.+..|+.++++|+||
T Consensus 1 ~v~~i~HsH~D~~W~~t~~~~~---------~~~~~~~~~~l~~l~~~~~~~f~~~~~~~~~~-~~~~~p~~~~~~~~lv 70 (275)
T PF01074_consen 1 TVHVIPHSHWDRGWLWTFEEYR---------RYLVNILDSVLDLLEEDPDFRFIDGQTAYLED-YLEDAPEEFKRIKKLV 70 (275)
T ss_dssp EEEEEEEEB--SSSSS-HHHHH---------HHHHHHHHHHHHHHHH-TT--EECTBCHHHHH-HHHCSGHHHHHHHHHH
T ss_pred CEEEccccccchhhcccHHHHH---------HHHHHHHHHHHHHHHhCCcceEeechhHHHHH-HHHhCCHHHHHHHHHH
Confidence 6999999999999999999996 59999999999999999999999999999954 5556999999999999
Q ss_pred HcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEeccChH
Q 001910 122 DASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQ 201 (997)
Q Consensus 122 ~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~~~~~~~Ri~~~ 201 (997)
++||||||||+|||+||+++++|++||||++|++|++++||++|++||+||+||||+++|+||+ ++||++++++|++++
T Consensus 71 ~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg~~~~~~~~~D~FG~~~~lP~il~-~~Gi~~~v~~r~~~~ 149 (275)
T PF01074_consen 71 KEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFGVRPKVAWQPDSFGHSAQLPQILK-QFGIKYFVIWRISWN 149 (275)
T ss_dssp HTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHTG--SEEEESSSSSB-TCHHHHHH-TTT-SEEEESSS-HH
T ss_pred HhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcCCCCCeEEeCCCCCCchhhHHHHh-ccCcceEEEeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred HHHhhhccCCeeEEEecCCCCCCCCceEEeecCCCCCCC-CCCCcccCCCCCCccCCCCCCcccHHHHHHHHHHHHHHhc
Q 001910 202 DRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPP-SGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQA 280 (997)
Q Consensus 202 ~~~~~~~~~~~eF~W~g~d~~~~gs~I~t~~~~~~Y~~p-~~f~f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~~~~~ 280 (997)
.++.++..+.++|+|+|+| |++||||+++.+|..| .+. +. ++++.+++++++.+
T Consensus 150 ~~~~~~~~~~~~F~W~g~d----Gs~ilt~~~~~~y~~~~~~~--------------------~~-~~~~~~~~~~~~~~ 204 (275)
T PF01074_consen 150 DKNPFKANPQSEFYWQGPD----GSEILTHVLPNYYYGPWYGS--------------------EF-EDADELLEQLRKLA 204 (275)
T ss_dssp HHHHHHHTTSSEEEEE-TT----STEEEEEE-TST-TSHHTTC--------------------CH-HHHHHHHHHHHHHH
T ss_pred cccccccCCCceEEEecCC----CcceeEEecccCCCCCCCCc--------------------cc-ccHHHHHHHHHHHH
Confidence 9998888889999999999 9999999999987652 111 11 35678889999999
Q ss_pred cccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHhc-CCceeEEEcChhhHHHHHHhcCCCCCCc-cCCCcccc
Q 001910 281 NVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNK-GGRVNALYSTPSLYTEAKNAANGPWPLK-TDDYFPYA 353 (997)
Q Consensus 281 ~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~-~~~~~i~~sT~~~Yf~~v~~~~~~~p~~-~gDf~py~ 353 (997)
+.+.++++|+|+|+|. +..+....+-+.|+.+|+ ...++++|||+++||++++++ .+||++ +|||+||+
T Consensus 205 ~~~~~~~~l~~~G~d~---~~~~~~~~~~~~i~~~~~~~~~~~i~~sT~~~yf~~l~~~-~~~p~~~~~df~~Y~ 275 (275)
T PF01074_consen 205 KKYYTNNILIPYGDDD---DGGPPDEELIEYINEWNEEYPGPKIKYSTLSEYFEALEKE-SELPVHYHGDFPPYA 275 (275)
T ss_dssp CCSSSSEEEEEEEEEH---HHHHHHHHHHHHHHHHHHHGCTEEEEE--HHHHHHHHHHC---B-EE-ES-B-S-E
T ss_pred HhcCCCceEEEeecCC---CCCCcHHHHHHHHHHhcccCCCeEEEECCHHHHHHHHHhc-cCCCcccCCCCCCCC
Confidence 9999999999999981 122222344444444444 468999999999999999998 999999 99999996
No 7
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-52 Score=508.22 Aligned_cols=722 Identities=18% Similarity=0.209 Sum_probs=506.3
Q ss_pred eEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhcChHHHHHHHHH
Q 001910 41 LNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKL 120 (997)
Q Consensus 41 ~~VhlvpHSH~D~gWl~t~~ey~~g~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~l 120 (997)
..|+.+.|+|.|..|+|.+++... .......+++..|+..|.++|+......+ .|..+..|+..++ ++
T Consensus 198 ~~I~~~ghahid~aWlw~l~et~r---------~a~ts~~~~~~l~D~~p~~~~~~s~~~~y-~~l~~d~p~l~~~--~~ 265 (943)
T COG0383 198 NEIPAVGHAHIDTAWLWPLDETER---------KASTSFSLVMNLMDHYPVQKFVQSAAALY-NWLKPDVPFLFSR--PA 265 (943)
T ss_pred ccccccchhhHHHHHhccHHHHHH---------HHhhhhhheecccccChhhhhhhhHHHHH-HHhcCccHHHhhc--cc
Confidence 339999999999999999999985 88999999999999999999997766655 9999999999999 99
Q ss_pred HHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEeccCh
Q 001910 121 VDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDY 200 (997)
Q Consensus 121 V~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~~~~~~~Ri~~ 200 (997)
|+.|+|++++|+||.+|.++++||+++||+.+|++|+.++||...|+.|.+|+||.|+++|+||. .+|+++|+++++.|
T Consensus 266 v~~~~~~~~~g~~ve~d~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~-p~gi~~f~t~klaw 344 (943)
T COG0383 266 VEFEQWEIVGGMWVEEDLNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQILE-PLGIDVFVTTKLAW 344 (943)
T ss_pred ccccceEEeecccccccCCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHHH-hhcchhhhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HHHHhhhccCCeeEEEecCCCCCCCCceEEeecCCCCCCCCCCCcccCCCCCCccCCCCCCcccHHHHHHHHHHHHHHhc
Q 001910 201 QDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQA 280 (997)
Q Consensus 201 ~~~~~~~~~~~~eF~W~g~d~~~~gs~I~t~~~~~~Y~~p~~f~f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~~~~~ 280 (997)
++.+.++++ .|.|++.+ |+++++|..+.+++. |. . .+ .. .++...
T Consensus 345 n~tn~~Ph~---~~~w~~~d----g~e~~~hds~~~~~~------d~---------------v---~~--~~--~~r~~~ 389 (943)
T COG0383 345 NDTNRFPHD---LLRWRWKD----GTENLAHDSICGCSS------DP---------------V---HR--EM--EYRFEK 389 (943)
T ss_pred hhccCCChh---Hheeeccc----ccccceeecCCCCcc------cH---------------H---HH--HH--Hhhhhh
Confidence 999999987 99999999 999999987655421 10 0 01 11 111111
Q ss_pred cccCCCeEEEeecC-CCCccchHHHHHHHHHHHHHHhcCCceeEEEcChhhHHHH----HHhcCCCCCCccCCCcccccc
Q 001910 281 NVTRDNHIMWTMGD-DFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEA----KNAANGPWPLKTDDYFPYADR 355 (997)
Q Consensus 281 ~~~~t~~il~~~G~-Df~~~~a~~~~~~~~~li~~~N~~~~~~i~~sT~~~Yf~~----v~~~~~~~p~~~gDf~py~~~ 355 (997)
.....++.+|. |+.. ++.-+.+++.. -..+..+|.. +.......|++.|++|
T Consensus 390 ---~~~~~~~~~g~gd~gg---g~~~dm~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ely----- 446 (943)
T COG0383 390 ---INQVGLYLYGYGDGGG---GPSIDMLENPE------------LPIAEGVFNTGVEKKTSTLELVPTWDGELY----- 446 (943)
T ss_pred ---hccceeEEeeccCCCC---CCCHHHHhccc------------cccccceeeecceeeeeecccccccchhhh-----
Confidence 23455666664 3322 23222222211 1222222222 2222456899999998
Q ss_pred CCCcceeeeecccchhhHHHHhhhHHHHHHHHHHhh----C--CCCCCCchHHHHHHHHhhccccCCCCCCcccchH-HH
Q 001910 356 RNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLA----G--KKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTN-DY 428 (997)
Q Consensus 356 ~~~yWtG~yTSrp~~K~~~R~~e~~L~~ae~l~~l~----~--~~~~~~~~~~l~~~l~~~QhHDaItGTs~~~V~~-dy 428 (997)
.++++|+||+....|.++|.+|..|+.+|.+.+++ + ..++...++++|+.++++|+||.++|++...|+. +.
T Consensus 447 -~E~hrg~~t~~~~~k~~~r~~e~~l~d~e~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~qfhdvlpgs~i~~vy~~~a 525 (943)
T COG0383 447 -LELHRGTYTTQAKTKKLNRESEFLLEDAEGISVEAAIIEGDRVTYPYELLNELWKGLLLAQFHDVLPGSSIKEVYSYDA 525 (943)
T ss_pred -hhccCceeehhhhhhhhccccccceecccccchhhhhhccccccCchhhHHHHHHHhhhhhceeeccccceeeechhhH
Confidence 78899999999999999999999999999888773 1 3466778899999999999999999999999999 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccccccccCCCCCCCCCCCCeEEEEEEcCCCcceeEEEEE
Q 001910 429 AKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRI 508 (997)
Q Consensus 429 ~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~v~Npl~~~r~~~V~i 508 (997)
...+......+..++..+++.|.+.. .-...++|++.|.+.
T Consensus 526 ~~~~~~~~~~~~~i~~~~~~~l~~~~----------------------------------~e~~~~~~~~~~~~~----- 566 (943)
T COG0383 526 LPLLEVVQKGASKIAELALKVLSSQC----------------------------------LENLFVKNTLSWNGI----- 566 (943)
T ss_pred HHHHHhhhccchhhhhhhhhhhhhcc----------------------------------ccceEEEeeccCCcc-----
Confidence 88888888888888888887774321 123678999999881
Q ss_pred EEcCCcEEEEcCCCCeeeEEEeeccccccccchhhhhhccCCCCCCCCcEEEEEEEeeCCCceEEEEEEecCCccccccc
Q 001910 509 PVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKG 588 (997)
Q Consensus 509 ~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~~~~~~~~ 588 (997)
.+.|.|..+..++.+.+. ...++|++|...+++++.....
T Consensus 567 -----~~~v~d~~~~~~~~~~~~------------------------------~~ed~~~~g~~~i~~~~~~~~~----- 606 (943)
T COG0383 567 -----SLQVLDKTSGGIYTSQLT------------------------------ALEDVGDIGNEYIYSQPTKTEP----- 606 (943)
T ss_pred -----eEEEEEcCCCceehhhhh------------------------------hhhhcCCcccceeEeccccccc-----
Confidence 556677655555443321 1136888888888773322110
Q ss_pred cccccCCCCCCceEecCCeEEEEEEcCCCcEEEEEecCCceeeeeeeEEEEeecccCCCCCCcceEccCCCc-ccccCCC
Q 001910 589 FFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQ-PNVVSRS 667 (997)
Q Consensus 589 ~~~~~~~~~~~~~~ieN~~~~v~~d~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~~~~~sgAY~F~P~~~~-~~~~~~~ 667 (997)
.....++...+..++ ++| +.+..|+.. +..++||.-++.... ...+...
T Consensus 607 ----------~~~~~~~~~~~~~~~-~~g-----------------n~~~~~~~~--~~~~~~w~i~~~~~~~~~~~~~~ 656 (943)
T COG0383 607 ----------ETVIEEKEWKRLIIN-DTG-----------------NQLALIEDE--PAYWDAWNIDKFLEEELLALTAL 656 (943)
T ss_pred ----------cccccccchheeecc-CCC-----------------cceeeeecc--cceechhcchhhhhhhhhhhhcc
Confidence 112233333444444 555 233334321 345566665554332 2222223
Q ss_pred ccEEEEecCceEEEEEEe---cceEEEEEEEeecCCceeEEEEECCeeccCCCCcEEEEEEEeeccCCcEEEEccCCccc
Q 001910 668 VPIKIIRGPMVDEVHQQF---NSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDF 744 (997)
Q Consensus 668 ~~i~i~~Gpl~~~v~~~~---~~~i~q~vrLy~~~~~ie~e~~v~~ip~~d~~~~e~~~rf~t~i~s~~~fytDsnG~~~ 744 (997)
..-.+++||++.++++.. .+.++|.|++++++++++|++.|++. ..++.+++.|++++.++...|..++| .
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~l~~~s~~l~~~t~vd~q----~~~~~lrv~fp~~~~s~~a~~d~~fg--~ 730 (943)
T COG0383 657 PEEAIENGPLVRTVRVSKELTESTITQKVTLYKGSPRLDFKTEVDNQ----VRDHRLRVLFPTDIASDFATADIPFG--V 730 (943)
T ss_pred ccchhccccceeeeeeeeeccceEEEEEEEEecCCceeEEEEEEEcc----ccceEEEEEecccccccceeccccce--e
Confidence 322368999999998764 46788999999999999999999754 56899999999999998777777766 9
Q ss_pred cccccccccccccCCCCCcccceEeeceeEEEeeCCce--EEEEeCCCceeeeccCcEEEEEEecCCCCcccccccc---
Q 001910 745 LKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSE--FSVLVDRATGGASIKDGQVEIMLHRGVGEALDESVCV--- 819 (997)
Q Consensus 745 ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~--ltvltdr~~G~~s~~~G~ielmL~RGvge~l~e~~~~--- 819 (997)
++|+++.+++|+.+.++...+.| +.+.|...| +++++|++||++ .+++.|.|+|+||+|| |-|-..-
T Consensus 731 v~Rp~~~~~~W~~a~~e~p~~~~------vdls~~~~g~~vs~ln~~kYg~~-~~~~~l~lTLLrs~~~-~gd~~~~P~p 802 (943)
T COG0383 731 VERPTHPNTSWENARFEVPLQKF------VDLSDGEYGVTVSLLGDCKYGIS-THGNLLALTLLRSVGE-LGDWGYRPDP 802 (943)
T ss_pred eccCCCCchhhhcccCcchhhcc------ccccCCccceeEeccCCcceeEe-ccCCEEEEEecccccc-cccccccCCc
Confidence 99999999999999998877777 999999998 888999999965 5999999999999977 3322111
Q ss_pred ccCCCCceEeeeEEEeccccCccchhcccchhhhcccceeeeeccccccccccccCccccCcc-CCCCCCcceEEEeeec
Q 001910 820 RDNCEGLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMES-DYSLPLNVALITLEEL 898 (997)
Q Consensus 820 ~~~~~gl~~~g~~~l~l~~~~~~~~~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~s~l~~-~~~lp~nv~lltl~~~ 898 (997)
..+|-|- .+.+|.+.+-..+-........++.++.|........+.. .......++.... ...-|+++.|.++|+.
T Consensus 803 ~Ad~~g~-h~~~y~ly~h~~~~~~~~~~~~a~~~~~P~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lsA~K~a 879 (943)
T COG0383 803 EADCLGE-HEFTYALYPHQGSFLSAPTAVRAYELNVPVRTVQVEEDGV--EGTLEATLDLLEPLLLVGPDNLILSALKRA 879 (943)
T ss_pred hhhhccc-eeEEEEEEEccccccccchhhhhhhccCceEEeecccccc--cccchhccccccccccCCCcceEEEeeeec
Confidence 1112121 1222222221111100001123444556665544221100 0011111111100 0135789999999999
Q ss_pred CCC-cEEEEEecccccCCCCCcceeeEeehhhhcCcCccce-eeecccccccchhhccceeeeeeCCCCCcCCCCCCCCC
Q 001910 899 DDG-SVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQ-LKEMSLSANQEKLEMKKMTWKVEGESGKTHSPVRGGPL 976 (997)
Q Consensus 899 ~~~-~illRl~~~~~~~~~~~~s~~~~v~l~~lf~~~~v~~-~~E~sLt~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 976 (997)
+++ +++||+.+...... .. -+.++ +.+.. +.|+.|-.+.. ++
T Consensus 880 ed~~~~IlR~yn~~~~~~-~~---~~~~~-------l~~~~~~~~~~llE~~~-------------------------~~ 923 (943)
T COG0383 880 EDGDGLILRLYNPSGTKT-LA---LIELS-------LPVVNAIRETNLLENEN-------------------------EL 923 (943)
T ss_pred ccCCceEEEEeccCCCCc-ce---eeecc-------chhhhhhhhhhhhcccc-------------------------cc
Confidence 876 69999965433322 10 11112 33444 77777776610 01
Q ss_pred CCCCceEEecCCceeEEEEEC
Q 001910 977 DASTLVVELGPMEIRTFLLKF 997 (997)
Q Consensus 977 ~~~~~~v~l~P~eIrTf~i~~ 997 (997)
..+. .|+.+|.||.||++..
T Consensus 924 ~~~~-~i~~~~~ei~t~k~~~ 943 (943)
T COG0383 924 ETNS-PITPKPVEIVTLKLEL 943 (943)
T ss_pred ccCC-cccccceEEEEEEeeC
Confidence 1111 5788899999999863
No 8
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=1.7e-41 Score=401.04 Aligned_cols=426 Identities=27% Similarity=0.423 Sum_probs=278.6
Q ss_pred EEEEEEcCCCcceeEEEEEEEcCCcEEEEcCCCCeeeEEEeeccccccccchhhhhhccCCCCCCCCcEEEEEEEeeCCC
Q 001910 490 LVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPL 569 (997)
Q Consensus 490 ~~v~v~Npl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~l 569 (997)
++|+|||||+|+|+++|+|+++.+.+.+.|.+|++|++|+++... ....++|.|.++||||
T Consensus 1 ~~vvvfN~l~~~r~~vv~i~v~~~~~~~~~~~g~~v~~qi~~~~~-------------------~~~~~~l~f~~~vPal 61 (457)
T PF07748_consen 1 FPVVVFNPLPWPRSEVVEIPVNTPNVSVYDADGKPVPSQIIPEPY-------------------STGRYELLFVVDVPAL 61 (457)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEECEEEEECSTSHEEHCEEEEEEE-------------------EEEEEEEEEEEEE-TT
T ss_pred CEEEEEECCCCcEEEEEEEEeccCceEEEecCCcEeeEEEEeccC-------------------CCCceEEEEEeccCCc
Confidence 579999999999999999999999999999999999999998221 1245789998899999
Q ss_pred ceEEEEEEecCCccccccccccccCCCCCCceEecCCeEEEEEEcCCCcEEEEEecCCceeee--eeeEEEEeecccC--
Q 001910 570 GWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVP--IQQSFLWYGSMVD-- 645 (997)
Q Consensus 570 G~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~ieN~~~~v~~d~~~G~l~si~dk~~g~~~~--~~~~f~~Y~~~~~-- 645 (997)
||++|.|...+.......... ....++..|||++|+|+||+.+|.|.+|+||++|+++. ..+++..|.+...
T Consensus 62 Gy~~~~i~~~~~~~~~~~~~~----~~~~~~~~leN~~~~v~~~~~tG~i~sl~dk~~g~~~~~~~~~~~~~y~~~~~~~ 137 (457)
T PF07748_consen 62 GYKTYRIVEGESSEPSNEASI----AKDSGDNVLENEFYKVTFDPNTGGIKSLYDKKTGREYVDQDGNDFYIYEDIDGDY 137 (457)
T ss_dssp EEEEEEEEECSS--TTC--CE----EETT-TTEEETSSEEEEE-TTTSSEEEEEETTTS-EEEEEECEEEEEEEBTTSCT
T ss_pred eeEEEEeecccccccccccee----ecceeeEEEEccEEEEEEeCCCCeEEEEEEccCCeEEEeecCCceeEeccccccc
Confidence 999999998766443211000 00113479999999999997669999999999999999 8899999975321
Q ss_pred ------CCCCCcceEccCCCcccccCCCccEEEEecC--ceEEEEEEecceEEEEEEEeecCCceeEEEEECCeeccCCC
Q 001910 646 ------TQSSGAYIFRPNGAQPNVVSRSVPIKIIRGP--MVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSV 717 (997)
Q Consensus 646 ------~~~sgAY~F~P~~~~~~~~~~~~~i~i~~Gp--l~~~v~~~~~~~i~q~vrLy~~~~~ie~e~~v~~ip~~d~~ 717 (997)
.+.+|+|.|.|++.....+.-...+. ..+. ++.+......+.++++++||+++++||+++.|+|.+. .
T Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~-~p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ie~~~~vdn~~~---~ 213 (457)
T PF07748_consen 138 DISPLELQRSGAYLFVEDGPLRSSIRVEYKFE-LPKNLSLVKRSEQTGSSRITQTIRLYKGSPRIEFETEVDNWAE---D 213 (457)
T ss_dssp TE-SCCCGSEECCEEEEESSSEEEEEEEEEEE-EESCBECEEEESCEEEEEEEEEEEEETTESSEEEEEEEEE-TT---S
T ss_pred cccccccccCceEEEEecCCceEEEEEEEEEe-ccCCcEEEEEEEeccceEEEEEEEEecCceEEEEEEEeccccc---C
Confidence 12466777766555211000000000 0111 2233333345688999999999999999999986532 2
Q ss_pred C-cEEEEEEEeeccCCcEEEEccCCccccccccccccccccCCCCCcccceEeeceeEEEeeCCceEEEEeCCCceeeec
Q 001910 718 G-KEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASI 796 (997)
Q Consensus 718 ~-~e~~~rf~t~i~s~~~fytDsnG~~~ikR~~~~r~~w~~~~~~pv~~NyYP~~s~~~I~D~~~~ltvltdr~~G~~s~ 796 (997)
. ++++++|+|++.++..||+|+||+.+.+|++.. ..+.++|||||.+.++|.|.+.+++|+||+++|++++
T Consensus 214 ~~~~l~~~f~t~i~~~~~~~~~~fG~~~r~~~~~~--------~~~~~~~~~p~~~~~~v~~~~~~l~i~~d~~~g~~~~ 285 (457)
T PF07748_consen 214 HRKELRVRFPTNIDSDEAFYDDQFGFIERKRPTHP--------NTPWEANYYPVPSHAFVDDSDSRLAILNDGKYGYESL 285 (457)
T ss_dssp CEEEEEEEEEES-S-TCEEEEESTTEEEEECESST--------TTTCGGG-EEECSCCEEEECSECEEEEESS-EEEEEC
T ss_pred CceeEEEEeecCCCCCCEEEECCCCeEEecCCccc--------cCCcccccCCCcceEEEEcCCCCEEEEcCCCcceEec
Confidence 3 379999999999999999999994443335442 3677899999999999999998899999999999988
Q ss_pred c-CcEEEEEEecCCCCccccccccccCCCCceEeeeEEEeccccCccchhcccchhhhcccceeeeeccccccccccccC
Q 001910 797 K-DGQVEIMLHRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEKLETWTESHLT 875 (997)
Q Consensus 797 ~-~G~ielmL~RGvge~l~e~~~~~~~~~gl~~~g~~~l~l~~~~~~~~~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~ 875 (997)
. +|+|+||||| -+..| ++.|. +.|.|.+...........+.+..+++|++++..... ......
T Consensus 286 ~~~g~l~ltL~R---~~~~D------~g~~~---~~~~l~~~~~~~~~~~~~~~a~~l~~Pl~~~~~~~~----~~~~~~ 349 (457)
T PF07748_consen 286 DQDGELELTLLR---RPSQD------DGRGV---FRYALYPHSGSWDEADVVQEAYELNQPLIVFNSSNI----QARQLN 349 (457)
T ss_dssp TTTTEEEEEEEE---EBSCG-------SSSE---ECCEEEEEEEEEEEEECHHCHHHHTS-EEEESS--T----TBEE--
T ss_pred cCCCeEEEEEee---ccccc------CCccE---EEEEEEEeccccccccchhhhhhccCccEEeecccc----cccccc
Confidence 7 9999999999 22222 12222 256666654432211113456799999988622111 111122
Q ss_pred ccccCcc-CCCCCCcceEEEe-----eecCCC-----cEEEEEecccccCCCCC--c-cee---eEeehhhhcCcCccce
Q 001910 876 KSTAMES-DYSLPLNVALITL-----EELDDG-----SVLLRLAHLYEEGEDAE--Y-STL---AKVELKKMFKGKSIKQ 938 (997)
Q Consensus 876 ~~s~l~~-~~~lp~nv~lltl-----~~~~~~-----~illRl~~~~~~~~~~~--~-s~~---~~v~l~~lf~~~~v~~ 938 (997)
.++++.. ...+|+++|..+| |+.+++ .++||+-+......... + +.+ +++++.++|....+..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~sa~K~aed~~~~~~~~ilR~~n~~~~~~~~~~~~~~~~~~~~~~~~~~lle~~~~~~ 429 (457)
T PF07748_consen 350 SFSGLSLPPEESPLNIHLLNLVVSALKKAEDGSDWSDGLILRLYNPSGKETEASLDFLSKPLSGAEVNLVNLLEEPDIEE 429 (457)
T ss_dssp CE-TCS--SSEESTCECEEEEEEEEEEECTTTSEEETCEEEEEEESSSSTCCCTTCCTSCCTEEEEEEEESTTSSSCEEE
T ss_pred CCCcccccccccccccCCCcccccccccccccccccCCEEEEEEecCCCccccccccCCccceeEEEEecccccCCCccc
Confidence 2232221 1135666665555 777665 68888865444332222 1 234 7888888888888888
Q ss_pred eeecccccccchhhccceeeeeeCCCCCcCCCCCCCCCCCCCceEEecCCceeEEE
Q 001910 939 LKEMSLSANQEKLEMKKMTWKVEGESGKTHSPVRGGPLDASTLVVELGPMEIRTFL 994 (997)
Q Consensus 939 ~~E~sLt~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~v~l~P~eIrTf~ 994 (997)
+.||++++... .+...|+|+|||||||+
T Consensus 430 i~e~s~~~~~~----------------------------~~~~~~~l~P~EIkT~r 457 (457)
T PF07748_consen 430 IEETSLSDPSE----------------------------SNSVELTLKPFEIKTFR 457 (457)
T ss_dssp EEEE-SEEEES----------------------------CGGTCSEE-TTEEEEEE
T ss_pred eEeeccCCCCC----------------------------CCEeEEEEeCcEEEEEC
Confidence 99999544221 12347899999999996
No 9
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=99.81 E-value=2.3e-21 Score=169.26 Aligned_cols=75 Identities=37% Similarity=0.573 Sum_probs=65.0
Q ss_pred CcceeeeecccchhhHHHHhhhHHHHHHHHHHhhCC-----CCCCCchHHHHHHHHhhccccCCCCCCcccchHHHHHHH
Q 001910 358 AYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGK-----KSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRL 432 (997)
Q Consensus 358 ~yWtG~yTSrp~~K~~~R~~e~~L~~ae~l~~l~~~-----~~~~~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl 432 (997)
+||+|||||||.+|+++|++|++|+.||.+.+++.. .++...++++|+.|+++||||+||||++++|++||.+||
T Consensus 1 e~~~G~~tSr~~~K~~~r~~e~~L~~~E~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~q~HD~i~GT~~~~V~~d~~~rl 80 (80)
T PF09261_consen 1 EYWTGYYTSRPDIKQLNRRAENLLRAAEPLAALAALLGNGGDYPQEELEKAWKALLLNQFHDAITGTSIDSVYDDYLRRL 80 (80)
T ss_dssp EES-GGGCSTHHHHHHHHHHHHHHHCHHHHHHHCHHH--HSG-HHHHHHHHHHHHHCTTBTTTTTS-S-HHHHHHHHHHH
T ss_pred CCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCccccHHHHHHHHHHHHHhccCCCCCCcChHHHHHHHHHhC
Confidence 589999999999999999999999999999998532 345567899999999999999999999999999999986
No 10
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=99.79 E-value=8.4e-20 Score=159.04 Aligned_cols=74 Identities=42% Similarity=0.565 Sum_probs=68.3
Q ss_pred cceeeeecccchhhHHHHhhhHHHHHHHHHHhh-----CCCCCCCchHHHHHHHHhhccccCCCCCCcccchHHHHHHH
Q 001910 359 YWTGFFTSRPALKGYVRVLSGFYLASRQLEFLA-----GKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRL 432 (997)
Q Consensus 359 yWtG~yTSrp~~K~~~R~~e~~L~~ae~l~~l~-----~~~~~~~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl 432 (997)
||+|||||||.+|+++|++|++|+.+|.+.+++ +..++...++.+|+.|+++||||+||||++++|++||.+|+
T Consensus 1 ~h~G~~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~i~Gt~~~~V~~d~~~r~ 79 (79)
T smart00872 1 YHRGTYTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDAITGTSIDEVYDDYETRL 79 (79)
T ss_pred CCCceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcccCCccCcHHHHHHHHHhC
Confidence 799999999999999999999999999999885 34567778999999999999999999999999999999874
No 11
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.9e-20 Score=230.99 Aligned_cols=354 Identities=18% Similarity=0.189 Sum_probs=260.7
Q ss_pred CceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHH
Q 001910 39 GKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQV 117 (997)
Q Consensus 39 ~~~~VhlvpHSH~D~gWl~t~~ey~~g~~~~~~~~~v~~il~~vl~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~v 117 (997)
.+..+|++.|+|||++|+.+.+.+.. .+...++++++.++++|. .-|..+++....+.+....|+.++++
T Consensus 2 ~~~~~~ii~~~~wdrew~~~~e~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~d~qt~~l~d~l~v~~~~~~~~ 72 (943)
T COG0383 2 LKKKVHIISHSHWDREWYFTSESHRI---------LLDELFEEIIELLQKDPEFAGFHLDGQTIWLDDYLAVPPELKDRV 72 (943)
T ss_pred CccccccchhhhhhhhceeeccceEe---------echhhhhhhhhccccCcccceecCccceeeeeeeEEecccchhhH
Confidence 35667999999999999999999986 556669999999999994 44888998887788888999999999
Q ss_pred HHHHHcCCeEEEceee-eeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEe
Q 001910 118 RKLVDASQLEFVNGGW-CMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFA 196 (997)
Q Consensus 118 k~lV~~GrlE~v~GgW-v~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~~~~~~~ 196 (997)
+.+++.|++ .+ |+| .+.|.+.+++|+.+|++++|..+ ...+|...+.||.+|.||+..+.|+++. .+|++.+.|+
T Consensus 73 ~~~~~~~~l-~i-g~~~~~~~~~~~~~e~~~rn~l~~~~~-~~~~~~~~~~g~~~d~~g~~~qa~~~~~-~~~i~~~~f~ 148 (943)
T COG0383 73 KLLIASGKL-GI-GPWYTQTDTFILSGESNVRNLLIGEFD-AERFGKAMKLGYFPDTFGNLGQAPQLYE-NAGISAVAFG 148 (943)
T ss_pred HHHHhhcCc-cc-cCCCCeeEEEEeccccceeeeecchHH-HHHhhhhhccccccccchhhhhhhHHHH-hcCCchhhcc
Confidence 999999999 44 888 99999999999999999999985 6777799999999999999999999998 9999999999
Q ss_pred ccChHHH------H---hhhccCCeeEEEecCCCCCCCCceEEeecCCCCCCCCCCCcccCCCCCCccCCCCCCcccHHH
Q 001910 197 RIDYQDR------A---KRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQ 267 (997)
Q Consensus 197 Ri~~~~~------~---~~~~~~~~eF~W~g~d~~~~gs~I~t~~~~~~Y~~p~~f~f~~~~~~~p~~~~~~~~~~nv~~ 267 (997)
|+..... . ......-.+..|.+++ +++++.+.++..|..+..+.- ....-++-
T Consensus 149 r~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~----~~~~l~il~~~~y~~g~~I~~--------------~ghahid~ 210 (943)
T COG0383 149 RGAALIGFGQLVLFELLEAYGSDFSEITWSEPD----GSQVLGILLANGYSNGNEIPA--------------VGHAHIDT 210 (943)
T ss_pred cccchhhcccchhhhhhhHhcCcCcccccccCC----chhhHHHHHHHHhhccccccc--------------cchhhHHH
Confidence 9763111 0 1112334477888888 888888888888887654211 00012333
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHhcC-CceeEEEcC----hhhHHHHHHhc-CCC
Q 001910 268 WVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKG-GRVNALYST----PSLYTEAKNAA-NGP 341 (997)
Q Consensus 268 ~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~~-~~~~i~~sT----~~~Yf~~v~~~-~~~ 341 (997)
.+..-++..++.+ .+..++++.|+|..+.. .++...+++.|.- ......|+. ...|+...... ...
T Consensus 211 aWlw~l~et~r~a---~ts~~~~~~l~D~~p~~-----~~~~s~~~~y~~l~~d~p~l~~~~~v~~~~~~~~~g~~ve~d 282 (943)
T COG0383 211 AWLWPLDETERKA---STSFSLVMNLMDHYPVQ-----KFVQSAAALYNWLKPDVPFLFSRPAVEFEQWEIVGGMWVEED 282 (943)
T ss_pred HHhccHHHHHHHH---hhhhhheecccccChhh-----hhhhhHHHHHHHhcCccHHHhhcccccccceEEeeccccccc
Confidence 3444455555555 45678899999986554 7777778888743 233334444 33444333221 234
Q ss_pred CCCccCCCccccccCCCc----c--eeeeecccchhhHHHHhhhHHH-HHHHHHH-------h---hCCCCCCCchHHHH
Q 001910 342 WPLKTDDYFPYADRRNAY----W--TGFFTSRPALKGYVRVLSGFYL-ASRQLEF-------L---AGKKSPGPTTSALG 404 (997)
Q Consensus 342 ~p~~~gDf~py~~~~~~y----W--tG~yTSrp~~K~~~R~~e~~L~-~ae~l~~-------l---~~~~~~~~~~~~l~ 404 (997)
.++.+||+.. +...| . ...-+||..+|..+-..+..|- .++.+.. + .+.++|...+.-.|
T Consensus 283 ~n~~sGEsls---rq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~p~gi~~f~t~klawn~tn~~Ph~~~~w~~ 359 (943)
T COG0383 283 LNTPSGESLS---RQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQILEPLGIDVFVTTKLAWNDTNRFPHDLLRWRW 359 (943)
T ss_pred CCccccchhh---hhhhccceeeecccCccceeEeehhccccchhHHHHHHhhcchhhhccccchhhccCCChhHheeec
Confidence 6889999883 22223 1 3345899999998876666654 2222222 1 12345555666679
Q ss_pred HHHHhhccccCCCCCCcccchHHHHHHHHH
Q 001910 405 DALGIAQHHDAVTGTAKQHTTNDYAKRLAI 434 (997)
Q Consensus 405 ~~l~~~QhHDaItGTs~~~V~~dy~~rl~~ 434 (997)
+..+.++.||++|||+.+.|+.+...|...
T Consensus 360 ~dg~e~~~hds~~~~~~d~v~~~~~~r~~~ 389 (943)
T COG0383 360 KDGTENLAHDSICGCSSDPVHREMEYRFEK 389 (943)
T ss_pred ccccccceeecCCCCcccHHHHHHHhhhhh
Confidence 999999999999999999999998888766
No 12
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=98.35 E-value=1.8e-06 Score=98.52 Aligned_cols=121 Identities=20% Similarity=0.283 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhcChHH-----------------------------------------
Q 001910 75 VENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEI----------------------------------------- 113 (997)
Q Consensus 75 v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~----------------------------------------- 113 (997)
..+.+--++..|++.|+.|++.+=...+.+++....+..
T Consensus 28 ~~~~Y~pll~~l~~~~~~k~t~~lSp~LleqL~d~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~l~~~~~ 107 (360)
T PF03065_consen 28 ATECYLPLLRLLERLPDFKLTFSLSPSLLEQLEDYAPQEYDQYLERSLARAELLREEKEFLLRANFTREDFERLLDFFRE 107 (360)
T ss_dssp HHHTHHHHHHHHHHHHH--EEEEE-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhCcCccEEEEECHHHHHHHHhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 445555777777777778877765556668887777777
Q ss_pred -----HHHHHHHHHcCCeEEEceeeeeecccCCCh-HHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhh
Q 001910 114 -----QEQVRKLVDASQLEFVNGGWCMHDEATTHY-VDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVE 187 (997)
Q Consensus 114 -----~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~-es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~ 187 (997)
.+.+|+|+++|++|++++++..+=-.+..- +++..|+..|.+.+++.||++|+..|.+. .+.+..+..+|+ +
T Consensus 108 ~~~~ii~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG~~P~G~W~pE-~a~~~~l~~~l~-~ 185 (360)
T PF03065_consen 108 IIGDIIEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFGRRPRGFWLPE-CAYSPGLEEILA-E 185 (360)
T ss_dssp TTT-HHHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHSS--SBEE-GG-G-B-TTHHHHHH-H
T ss_pred hhhhhHHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceECcc-cccCHHHHHHHH-H
Confidence 899999999999999999998887777787 99999999999999999999999999987 488899999998 9
Q ss_pred cCCcEEEEec
Q 001910 188 LGFDSVHFAR 197 (997)
Q Consensus 188 ~G~~~~~~~R 197 (997)
+||+++++.-
T Consensus 186 ~Gi~~~i~d~ 195 (360)
T PF03065_consen 186 AGIRYTILDG 195 (360)
T ss_dssp TT--EEEEEC
T ss_pred cCCEEEEECc
Confidence 9999999863
No 13
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.015 Score=65.59 Aligned_cols=92 Identities=14% Similarity=0.201 Sum_probs=78.5
Q ss_pred HHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCC-hHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhH
Q 001910 103 HRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTH-YVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQA 181 (997)
Q Consensus 103 ~~w~~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~-~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p 181 (997)
..-|++.+....+++|++.+.|.+|+++++-+-.---+-. -|++=-|+..|.+-..++||..|+--|.| --++...++
T Consensus 115 ~~~~e~~d~~ll~~f~~~~~~g~ieilts~athg~lPll~~peAi~AQi~~g~~~ye~~fg~~P~GiWlP-Ecay~pgie 193 (504)
T COG1543 115 RGYWEQYDGNLLEAFKELQRSGGIEILTSAATHGYLPLLGGPEAIEAQILTGIELYEEHFGLAPKGIWLP-ECAYAPGIE 193 (504)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCceeeeehhhheehhhcCCchhhHHHHHHHHHHHHHHhCCCCCceech-hhccccchH
Confidence 4667888999999999999999999998776443332333 38888999999998899999999999999 568999999
Q ss_pred HHHhhhcCCcEEEEe
Q 001910 182 YLLGVELGFDSVHFA 196 (997)
Q Consensus 182 ~ll~~~~G~~~~~~~ 196 (997)
.+|+ .+||++++.-
T Consensus 194 ~~l~-~~Gi~yf~vd 207 (504)
T COG1543 194 RILK-DAGIEYFFVD 207 (504)
T ss_pred HHHH-hcCceEEEec
Confidence 9998 9999999985
No 14
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=95.62 E-value=0.13 Score=48.74 Aligned_cols=103 Identities=20% Similarity=0.317 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHH
Q 001910 77 NVLDSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHH 155 (997)
Q Consensus 77 ~il~~vl~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~ 155 (997)
..+..+++.|+++.- ..|-.... +..+ ..+.+++++++| +||.+-||.-++....+.+.+.+++..+.+
T Consensus 18 ~~~~~~~~~l~~~~i~at~fv~~~-~~~~--------~~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~~ 87 (123)
T PF01522_consen 18 DNYDRLLPLLKKYGIPATFFVIGS-WVER--------YPDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSRE 87 (123)
T ss_dssp THHHHHHHHHHHTT--EEEEE-HH-HHHH--------HHHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccceeeeeccc-cccc--------ccccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHHH
Confidence 456788888888742 23333322 2222 268999999999 999999998888888999999999999999
Q ss_pred HHHHHcCCCCceeeecCCCCC-ChhhHHHHhhhcCCcE
Q 001910 156 YIKQHFNKTPKAGWQIDPFGH-SAVQAYLLGVELGFDS 192 (997)
Q Consensus 156 ~l~~~fG~~p~v~w~iD~FGh-s~~~p~ll~~~~G~~~ 192 (997)
+|++.+|..|+. -.=|||. +...-++++ ++||++
T Consensus 88 ~l~~~~g~~~~~--f~~P~g~~~~~~~~~l~-~~G~~y 122 (123)
T PF01522_consen 88 ILEEITGRPPKG--FRYPFGSYDDNTLQALR-EAGYKY 122 (123)
T ss_dssp HHHHHHSSEESE--EE-GGGEECHHHHHHHH-HTT-EE
T ss_pred HHHHHhCCCCcE--EECCCCCCCHHHHHHHH-HcCCCc
Confidence 999999995553 4568885 777778997 999986
No 15
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=94.70 E-value=1.4 Score=53.63 Aligned_cols=97 Identities=15% Similarity=0.267 Sum_probs=77.2
Q ss_pred EEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCC----ChHHHHHHHHHHHHHHHHHcCCCCceee
Q 001910 94 FVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATT----HYVDMIDQTTLGHHYIKQHFNKTPKAGW 169 (997)
Q Consensus 94 F~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~----~~es~I~ql~~G~~~l~~~fG~~p~v~w 169 (997)
|++++..-+..+-....++..+.+|++++.|+.|++.-++--+=-++. -++++++|+..+....++-||+.|+..|
T Consensus 162 ys~~g~~~il~~~~~~~~~vl~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~gw~~d~~~qv~~~~~~~~elfG~~p~~~~ 241 (615)
T COG1449 162 YSLSGGETILEQQLDEAPRVLEAFRELAESGKVELTASPYYHSLIPLLADDGWYEDFKEQVMMSRELYKELFGVWPSGFW 241 (615)
T ss_pred eeccccHHHHHHHHHHHhhhHHHHHHHHhcCceEEEecccccccchhcccCCchHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 777763344455555678899999999999999999888843322222 4569999999999999999999999999
Q ss_pred ecCCCCCChhhHHHHhhhcCCcE
Q 001910 170 QIDPFGHSAVQAYLLGVELGFDS 192 (997)
Q Consensus 170 ~iD~FGhs~~~p~ll~~~~G~~~ 192 (997)
.+- +=.+.++..+++ .+|+..
T Consensus 242 ~tE-l~y~~~i~~~~~-e~G~~~ 262 (615)
T COG1449 242 NTE-LAYNDQILEYFE-ESGFSW 262 (615)
T ss_pred Chh-hhccHHHHHHHH-HcCCcc
Confidence 864 568888999998 999995
No 16
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=94.12 E-value=4.2 Score=44.99 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHH
Q 001910 75 VENVLDSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLG 153 (997)
Q Consensus 75 v~~il~~vl~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G 153 (997)
.+.=+-.+++.|+++-- -+|-.. -|+.+.+| +.+|+++++| .||.+=||...+-..-+.+...++|..+
T Consensus 75 ~rvG~~RiLdlL~~~gv~aTffv~------g~~~e~~P---~~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~s 144 (297)
T TIGR03212 75 SRAGFWRLLRLFTERGIPVTVFGV------AMALARNP---EAVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAEA 144 (297)
T ss_pred chhCHHHHHHHHHHcCCCEEEEeE------HHHHHHCH---HHHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHHH
Confidence 34456678899988743 345444 33446666 4677777899 8999999977666666888899999999
Q ss_pred HHHHHHHcCCCCceeeecCCCCCChhhHHHHhhh-cCCcEEEEeccC
Q 001910 154 HHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVE-LGFDSVHFARID 199 (997)
Q Consensus 154 ~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~-~G~~~~~~~Ri~ 199 (997)
.+-|++..|.+|. ||.. -.+|..++.||+ + .||.+..-+..+
T Consensus 145 ~~~i~~~tG~~P~-G~~~--~~~s~~T~~LL~-e~~Gf~Y~sd~~~d 187 (297)
T TIGR03212 145 IRLHTEVTGERPL-GWYT--GRTSPNTRRLVA-EEGGFLYDADSYAD 187 (297)
T ss_pred HHHHHHHhCCCCc-eEEC--CCCChhHHHHHH-HhcCceEeCchhhc
Confidence 9988888887764 5753 368999999997 8 999988776654
No 17
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=94.03 E-value=0.34 Score=50.03 Aligned_cols=101 Identities=18% Similarity=0.326 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCCC-cEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHH
Q 001910 80 DSVVEALRRDPNR-KFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIK 158 (997)
Q Consensus 80 ~~vl~~L~~~p~~-kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~ 158 (997)
..+++.|+++.-+ +|-.... |.+.+| +.+|+++++|. ||-+-+|.-++-..-+.+.+.+++..+.+.|+
T Consensus 22 ~~~l~~L~~~~ikaTfFv~g~------~~~~~~---~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~ 91 (191)
T TIGR02764 22 EPILDTLKEYDVKATFFLSGS------WAERHP---ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIE 91 (191)
T ss_pred HHHHHHHHHcCCCEEEEeccH------HHHHCH---HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 4567788877432 3443332 223344 67899999996 79999998888777889999999999999999
Q ss_pred HHcCCCCceeeecCCCC-CChhhHHHHhhhcCCcEE
Q 001910 159 QHFNKTPKAGWQIDPFG-HSAVQAYLLGVELGFDSV 193 (997)
Q Consensus 159 ~~fG~~p~v~w~iD~FG-hs~~~p~ll~~~~G~~~~ 193 (997)
+..|..|+ |-.=|+| ++..+..+++ +.||..+
T Consensus 92 ~~~g~~~~--~fr~P~G~~~~~~~~~l~-~~G~~~v 124 (191)
T TIGR02764 92 KLTGKKPT--LFRPPSGAFNKAVLKAAE-SLGYTVV 124 (191)
T ss_pred HHhCCCCC--EEECCCcCCCHHHHHHHH-HcCCeEE
Confidence 99999876 4566777 5666778887 8999844
No 18
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=93.67 E-value=5.7 Score=48.70 Aligned_cols=151 Identities=20% Similarity=0.346 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCeEEEceeeeeeccc--------------------CCChH-------HHHHHHHHHHHHHHHHcCCCCce
Q 001910 115 EQVRKLVDASQLEFVNGGWCMHDEA--------------------TTHYV-------DMIDQTTLGHHYIKQHFNKTPKA 167 (997)
Q Consensus 115 ~~vk~lV~~GrlE~v~GgWv~~Dea--------------------~~~~e-------s~I~ql~~G~~~l~~~fG~~p~v 167 (997)
+.||+++++|-+||-+=+|..|.-. ...|| .+.+.+..+.+.|++..|..|++
T Consensus 168 eqIreM~~sGlvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG~~p~~ 247 (671)
T PRK14582 168 QQVREVARSRLVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAGKNPRV 247 (671)
T ss_pred HHHHHHHhCCCeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 6899999999999988887655311 11222 26678999999999999999885
Q ss_pred eeecCCCC-CChhhHHHHhhhcCCcEEEEeccChHHHHhhhccCCeeEEEecCCCCCCCCceEEeecCCCCCCCCCCCcc
Q 001910 168 GWQIDPFG-HSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFE 246 (997)
Q Consensus 168 ~w~iD~FG-hs~~~p~ll~~~~G~~~~~~~Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~I~t~~~~~~Y~~p~~f~f~ 246 (997)
..=||| ++.....+++ ++||...+..+-... . .+..+ .+|+. .
T Consensus 248 --FayPyG~~n~~~~~iak-eaGY~~afT~~~G~~---------------~-------~~~~~--~LpRi-------~-- 291 (671)
T PRK14582 248 --WVWPYGEANGIALEELK-KLGYDMAFTLESGLA---------------N-------ASQLD--SIPRV-------L-- 291 (671)
T ss_pred --EecCCCCCCHHHHHHHH-HCCCeEEEEeCCCCC---------------C-------CCCcC--ccceE-------E--
Confidence 567899 5667788887 999998887642210 0 00000 11111 0
Q ss_pred cCCCCCCccCCCCCCcccHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCc-cchHHHHHHHHHHHHHHhcCC
Q 001910 247 LTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQY-QYAESWFKQMDKLIHYVNKGG 319 (997)
Q Consensus 247 ~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~-~~a~~~~~~~~~li~~~N~~~ 319 (997)
+..++ . .+.|...+.... .....+++-.+-|+-| .+...+-++++.+|+.+.+.+
T Consensus 292 -------I~~~~-----s----l~~f~~~v~~~~--~~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G 347 (671)
T PRK14582 292 -------IANNP-----S----LKEFAQQIITVQ--EKSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQ 347 (671)
T ss_pred -------ecCCC-----C----HHHHHHHHhccc--CCCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 00011 1 234555443321 1455666777778877 567777899999999998765
No 19
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=92.83 E-value=0.65 Score=49.26 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=77.3
Q ss_pred HHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHH
Q 001910 80 DSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIK 158 (997)
Q Consensus 80 ~~vl~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~ 158 (997)
..+++.|+++-- .+|-..+. | .+..| +.+|+++++|. ||-+-+|.-++-...+.+.+.++|....+.|+
T Consensus 53 ~~lL~~L~~~~vkATFFv~G~-----~-~~~~p---~~ir~i~~~Gh-eIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~ 122 (224)
T TIGR02884 53 PKILDVLKEKKVPAAFFVTGH-----Y-IKTQP---DLIKRMVDEGH-IVGNHSVHHPSLTAVNDEKFKEELTGVEEEFK 122 (224)
T ss_pred HHHHHHHHHcCCCeEEEeech-----h-hHHCH---HHHHHHHHcCC-EeeecCccCcCcccCCHHHHHHHHHHHHHHHH
Confidence 357888887743 33544432 2 23344 68899999995 68889998777777889999999999999999
Q ss_pred HHcCCC-CceeeecCCCC-CChhhHHHHhhhcCCcEE
Q 001910 159 QHFNKT-PKAGWQIDPFG-HSAVQAYLLGVELGFDSV 193 (997)
Q Consensus 159 ~~fG~~-p~v~w~iD~FG-hs~~~p~ll~~~~G~~~~ 193 (997)
+..|.. |+ |.-=|+| ++..+..+++ ++|+..+
T Consensus 123 ~~~G~~~~~--~fR~P~G~~~~~~~~~l~-~~Gy~~v 156 (224)
T TIGR02884 123 KVTGQKEMK--YFRPPRGVFSERTLAYTK-ELGYYTV 156 (224)
T ss_pred HHhCCCCCC--EEeCCCCCcCHHHHHHHH-HcCCcEE
Confidence 999976 44 7778999 5777888887 9999854
No 20
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=90.76 E-value=1.9 Score=46.86 Aligned_cols=111 Identities=19% Similarity=0.274 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHH
Q 001910 74 CVENVLDSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTL 152 (997)
Q Consensus 74 ~v~~il~~vl~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~ 152 (997)
.|...+..+++.|+++-- -+|-..+ |+.+..| +.+|+++++| .||.+=||.-.+-..-+.+.+.+++..
T Consensus 25 rv~~nt~riL~lL~~~gikATFFv~g------~~~e~~p---~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~eI~~ 94 (265)
T TIGR03006 25 RVERNTDRILDLLDRHGVKATFFTLG------WVAERYP---ELVRRIVAAG-HELASHGYGHERVTTQTPEAFRADIRR 94 (265)
T ss_pred hHHHhHHHHHHHHHHcCCcEEEEEec------cchhhCH---HHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHHHHH
Confidence 677788999999998753 4454442 3445556 5699999999 699999997766666688999999999
Q ss_pred HHHHHHHHcCCCCceeeecCC--CCCC-hhhHHHHhhhcCCcEEEEe
Q 001910 153 GHHYIKQHFNKTPKAGWQIDP--FGHS-AVQAYLLGVELGFDSVHFA 196 (997)
Q Consensus 153 G~~~l~~~fG~~p~v~w~iD~--FGhs-~~~p~ll~~~~G~~~~~~~ 196 (997)
..+.|++..|..|+ ||-.=. +|.. .....+|+ ++||.+..-.
T Consensus 95 s~~~Le~itG~~~~-gfRaP~~s~~~~t~~a~~iL~-e~Gy~YdsS~ 139 (265)
T TIGR03006 95 SKALLEDLSGQPVR-GYRAPSFSIGKKNLWALDVLA-EAGYRYSSSI 139 (265)
T ss_pred HHHHHHHHhCCCce-EEECCCCCCCCCcHHHHHHHH-HCCCEEEEee
Confidence 99999988998776 454332 3332 33468997 9999987654
No 21
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=89.81 E-value=2.8 Score=45.71 Aligned_cols=101 Identities=21% Similarity=0.382 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHH
Q 001910 79 LDSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYI 157 (997)
Q Consensus 79 l~~vl~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l 157 (997)
...+++.|+++-- .+|-..+. | .+.+| +.+|+++++|. ||-+=+|.-++...-+.+.+.++|..+.+.|
T Consensus 100 t~~iL~iLkk~~vkATFFv~G~-----~-i~~~p---~l~k~i~~~Gh-eIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i 169 (268)
T TIGR02873 100 LPEILQILKKHDVKATFFLEGK-----W-VKENS---QLAKMIVEQGH-EIGNHAYNHPDMATLSKEEIYDQINQTNEII 169 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeehH-----h-hhHCH---HHHHHHHHCCC-EEEecCCcCCCcccCCHHHHHHHHHHHHHHH
Confidence 4478888887753 34555442 2 23445 46888899996 7999999888888888999999999999999
Q ss_pred HHHcCCCCceeeecCCCCC-ChhhHHHHhhhcCCcE
Q 001910 158 KQHFNKTPKAGWQIDPFGH-SAVQAYLLGVELGFDS 192 (997)
Q Consensus 158 ~~~fG~~p~v~w~iD~FGh-s~~~p~ll~~~~G~~~ 192 (997)
++..|..|+ |..=|+|. +..+..+++ .+|+..
T Consensus 170 ~~~~G~~p~--~fRpP~G~~n~~~~~~l~-~~G~~~ 202 (268)
T TIGR02873 170 EATIGVTPK--WFAPPSGSFNDNVVQIAA-DLQMGT 202 (268)
T ss_pred HHHhCCCCC--EEECCCCCCCHHHHHHHH-HCCCeE
Confidence 999999887 77778996 567777887 889864
No 22
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=85.75 E-value=3.8 Score=50.14 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCeEEEceeeeeecc--------------------cCCChHH-------HHHHHHHHHHHHHHHcCCCCc
Q 001910 114 QEQVRKLVDASQLEFVNGGWCMHDE--------------------ATTHYVD-------MIDQTTLGHHYIKQHFNKTPK 166 (997)
Q Consensus 114 ~~~vk~lV~~GrlE~v~GgWv~~De--------------------a~~~~es-------~I~ql~~G~~~l~~~fG~~p~ 166 (997)
.++||+++++|-+||-+=+|..+.- ....+|+ +-+.+....+.|++..|..|+
T Consensus 167 W~qIrEM~~sGLvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~~p~ 246 (672)
T PRK14581 167 WKQITEMSKSGLVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGKQPR 246 (672)
T ss_pred HHHHHHHHHCCCcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3689999999999998888876631 1222432 556688888989999999888
Q ss_pred eeeecCCCC-CChhhHHHHhhhcCCcEEEEec
Q 001910 167 AGWQIDPFG-HSAVQAYLLGVELGFDSVHFAR 197 (997)
Q Consensus 167 v~w~iD~FG-hs~~~p~ll~~~~G~~~~~~~R 197 (997)
. ..=||| ++...-.+++ ++||..++..+
T Consensus 247 ~--FayPyG~yn~~~~~iak-~aGy~~afTt~ 275 (672)
T PRK14581 247 V--WVWPYGAPNGTVLNILR-QHGYQLAMTLD 275 (672)
T ss_pred E--EEcCCCCcCHHHHHHHH-HCCCcEEEECC
Confidence 4 557999 5778889988 99999988765
No 23
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=76.15 E-value=1.3e+02 Score=33.35 Aligned_cols=81 Identities=14% Similarity=0.084 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCeEEEceeeeee----cccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCC
Q 001910 115 EQVRKLVDASQLEFVNGGWCMH----DEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGF 190 (997)
Q Consensus 115 ~~vk~lV~~GrlE~v~GgWv~~----Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~ 190 (997)
+.+|+.+++ -|+.+=||.-. ....-+.+.+.++|..+.+-|++..|..|+ +|-+=-+-.+..+..++. ++||
T Consensus 92 ~lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~p~-g~raPgw~~~~~tl~ll~-e~Gf 167 (296)
T PRK15394 92 DIIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQPVT-CSAAAGWRADQRVVEAKE-AFGF 167 (296)
T ss_pred HHHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCCCC-EEeCCCccCCHHHHHHHH-HcCC
Confidence 467777777 99988899644 234557788999999999989898998865 355555556788899987 9999
Q ss_pred cEEEEeccC
Q 001910 191 DSVHFARID 199 (997)
Q Consensus 191 ~~~~~~Ri~ 199 (997)
.|---.|.+
T Consensus 168 ~Y~Ss~~~d 176 (296)
T PRK15394 168 RYNSDCRGT 176 (296)
T ss_pred eeecCCCCC
Confidence 988555543
No 24
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=69.24 E-value=37 Score=33.23 Aligned_cols=95 Identities=11% Similarity=0.055 Sum_probs=53.9
Q ss_pred CceEec-CCeEEEEEEcCCCcEEEEEecCCceeeeeeeEEEEeecccCCCCCCcceEccCCCcccccCCCccEEEEecCc
Q 001910 599 KTVEVG-PGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPM 677 (997)
Q Consensus 599 ~~~~ie-N~~~~v~~d~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~~~~~sgAY~F~P~~~~~~~~~~~~~i~i~~Gpl 677 (997)
..-+|+ ++.|+|.++.+++.+. |++|++|...++--+=.+.. +++...+|+|.-+. .+.+..-..|.|..=|.
T Consensus 8 gkati~lgd~Y~I~~~e~ds~~~-itnk~tG~~TriwGDPHvd~---~Gdg~~~fDFk~~~--tf~L~DGTKItV~T~p~ 81 (171)
T PF07481_consen 8 GKATIDLGDGYTIEANEKDSEWT-ITNKQTGETTRIWGDPHVDA---DGDGKTDFDFKGDM--TFQLDDGTKITVDTVPW 81 (171)
T ss_pred CeeEEecCCceEEEecCCcceEE-EecCCCCcEeEEeCCCcccc---CCCcccceeecCce--EEEeCCCCEEEEeeeec
Confidence 344666 7789999997788998 99999998877543332221 12333468886332 34455444555533332
Q ss_pred eEEEEEEecceEEEEEEEeecCCceeEE
Q 001910 678 VDEVHQQFNSWIYQVTRLYIDKEHAEVE 705 (997)
Q Consensus 678 ~~~v~~~~~~~i~q~vrLy~~~~~ie~e 705 (997)
-. +..+.-.+.|-++...+.++
T Consensus 82 gn------g~T~askLtIt~Gd~~~~V~ 103 (171)
T PF07481_consen 82 GN------GMTYASKLTITNGDNAWQVE 103 (171)
T ss_pred CC------CcEEeeeEEEEcCCceEEEe
Confidence 22 11223334455565555554
No 25
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=59.06 E-value=9.7 Score=31.15 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHcCCeEEEceee
Q 001910 111 PEIQEQVRKLVDASQLEFVNGGW 133 (997)
Q Consensus 111 p~~~~~vk~lV~~GrlE~v~GgW 133 (997)
++.++-+-++|++|+||++||-|
T Consensus 36 ~eL~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 36 EELQEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp HHHHHHHHHHHHTTSEE--TTEE
T ss_pred HHHHHHHHHHHHCCcEEecCCEE
Confidence 35667778999999999998876
No 26
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=45.19 E-value=18 Score=34.89 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEcee
Q 001910 74 CVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGG 132 (997)
Q Consensus 74 ~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~v~Gg 132 (997)
....-|..|-+.|.++|.+.-+..|++ +...-..+.|.++|++|||++...+
T Consensus 27 ~~e~~f~kV~~yLr~~p~~~ati~eV~-------e~tgVs~~~I~~~IreGRL~~~~~~ 78 (137)
T TIGR03826 27 EEEREFEKVYKFLRKHENRQATVSEIV-------EETGVSEKLILKFIREGRLQLKHFP 78 (137)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHH-------HHHCcCHHHHHHHHHcCCeeccCCC
Confidence 456778888899999999877665554 2333445889999999999987543
No 27
>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.
Probab=36.54 E-value=53 Score=30.57 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=46.9
Q ss_pred EEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhcChHHHHHHHHHH
Q 001910 42 NVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLV 121 (997)
Q Consensus 42 ~VhlvpHSH~D~gWl~t~~ey~~g~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV 121 (997)
+|.=+|=.|.|.--+...+.-+. .+..++-.|+..+..... +|| ..-|+++||
T Consensus 40 ~i~sv~ed~yD~~Il~~~~~~~~---------~~arvIg~vl~~~~~~i~------------D~f------~~~Ri~~Li 92 (111)
T PF12395_consen 40 KIVSVPEDYYDDFILEQAPDEFQ---------KAARVIGEVLGHSDQGIG------------DWF------LEYRIRELI 92 (111)
T ss_pred eEEecChHHhhHHHHhcCCcccc---------HHHHHHHHHHHhcCcCCC------------hHH------HHHHHHHHH
Confidence 45556777888877775555443 777888888887633222 333 236899999
Q ss_pred HcCCeEEEceeeeeec
Q 001910 122 DASQLEFVNGGWCMHD 137 (997)
Q Consensus 122 ~~GrlE~v~GgWv~~D 137 (997)
++|+||+.|-+-.|.+
T Consensus 93 ~~G~le~~g~~~~mr~ 108 (111)
T PF12395_consen 93 SQGVLEIKGDPKDMRH 108 (111)
T ss_pred HCCCEEEecCCCcccc
Confidence 9999999865545543
No 28
>PRK10148 hypothetical protein; Provisional
Probab=30.93 E-value=18 Score=35.55 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=15.1
Q ss_pred CceeeecCCCCCChhhHH
Q 001910 165 PKAGWQIDPFGHSAVQAY 182 (997)
Q Consensus 165 p~v~w~iD~FGhs~~~p~ 182 (997)
++.||..|+||++|++-.
T Consensus 123 ~~~g~v~D~fGi~W~l~~ 140 (147)
T PRK10148 123 HGFGKVTDKFGVPWMINV 140 (147)
T ss_pred hccEEEECCCCCEEEEEe
Confidence 477999999999997643
No 29
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=30.76 E-value=3.6e+02 Score=30.81 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=24.2
Q ss_pred CCceEecCCeEEEEEEcCCCcEEEEEecC
Q 001910 598 DKTVEVGPGNLKMSFSRTTGQLKRMYNSR 626 (997)
Q Consensus 598 ~~~~~ieN~~~~v~~d~~~G~l~si~dk~ 626 (997)
...++|+|+.++++|+...|.|.++.-|+
T Consensus 73 ~~~i~v~td~~~~~is~~Gg~i~~~~Lk~ 101 (366)
T TIGR03593 73 AKRITVKTDVLRASISTKGGDIDSLELKK 101 (366)
T ss_pred CCeEEEECCeEEEEEeCCCceeeeecccc
Confidence 34689999999999997778999887654
No 30
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=29.29 E-value=4.2e+02 Score=28.93 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=51.2
Q ss_pred ecCCeEEEEEEcCCCcEEEEEecCCceeeee-eeEEEEeecccCCCCCCcce-----EccCCCcccccCCCccEE--EEe
Q 001910 603 VGPGNLKMSFSRTTGQLKRMYNSRTGVDVPI-QQSFLWYGSMVDTQSSGAYI-----FRPNGAQPNVVSRSVPIK--IIR 674 (997)
Q Consensus 603 ieN~~~~v~~d~~~G~l~si~dk~~g~~~~~-~~~f~~Y~~~~~~~~sgAY~-----F~P~~~~~~~~~~~~~i~--i~~ 674 (997)
|.++..++.||+++|.|.++.- .|+++.. ...+.++.+..|.+.+.... +...+..... .....+. -..
T Consensus 2 V~g~~f~~~Fdk~~G~l~s~~~--~g~~ll~~~~~~nfwRApTDND~~~~~~~~~~~W~~ag~~~~~-~~~~~~~~~~~~ 78 (276)
T PF02929_consen 2 VSGKDFSYVFDKKTGTLTSYKY--NGKELLKRGPKPNFWRAPTDNDRGIGNPSRAARWKDAGLDRLV-TRVRSVKVEESD 78 (276)
T ss_dssp EEETTEEEEEETTTTCEEEEEE--TTEEEECEEEEEE---S--TCCCTTTTSHSCHHHHHTTTTCEE-EEEEEEEEEEEE
T ss_pred CccCCEEEEEECCCCeEEEEEE--CCEEeecCCCcccEEeCCCCCccccccchhHHHHHHcCcccee-eEEeEEEEEecC
Confidence 5566789999999999999875 3666653 33455555433334333322 2222221000 0011122 233
Q ss_pred cCceEEEEEEe--c-----ceEEEEEEEeecCCceeEEEEECCe
Q 001910 675 GPMVDEVHQQF--N-----SWIYQVTRLYIDKEHAEVEYTIGPI 711 (997)
Q Consensus 675 Gpl~~~v~~~~--~-----~~i~q~vrLy~~~~~ie~e~~v~~i 711 (997)
+.+.-.+...+ . ..+.++++++.+ ..|+++.++.+.
T Consensus 79 ~~~~v~v~~~~~~~~~~~~~~~~~~y~i~~d-G~i~v~~~~~~~ 121 (276)
T PF02929_consen 79 GDVAVTVTARYAAPNKSWNFEVTITYTIYAD-GTIKVDMTFEPS 121 (276)
T ss_dssp SESEEEEEEEEEETTCCEEEEEEEEEEEETT-SEEEEEEEEEEE
T ss_pred CCceEEEEEEEeCCCcceEEEEEEEEEEcCC-CEEEEEEEEEeC
Confidence 44444444332 1 134556666654 467787777554
No 31
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=28.69 E-value=1.7e+02 Score=31.58 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.3
Q ss_pred eEecCCeEEEEEEcCCCcEEEEEec
Q 001910 601 VEVGPGNLKMSFSRTTGQLKRMYNS 625 (997)
Q Consensus 601 ~~ieN~~~~v~~d~~~G~l~si~dk 625 (997)
++|||+.++++|+...|.|+++.-|
T Consensus 2 v~ven~~~~~~~s~~GG~i~~~~Lk 26 (270)
T PF14849_consen 2 VTVENDLFKVTFSSKGGRIKSVELK 26 (270)
T ss_dssp EEEE-SS-EEEEETBTTEEEEEEEE
T ss_pred EEEECCCEEEEEECCCCeEEEEEcC
Confidence 6899999999999889999988755
No 32
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=27.69 E-value=3.9e+02 Score=28.15 Aligned_cols=114 Identities=16% Similarity=0.251 Sum_probs=80.2
Q ss_pred CchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEcee
Q 001910 54 GWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGG 132 (997)
Q Consensus 54 gWl~t~~ey~~g~~~~~~~~~v~~il~~vl~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~v~Gg 132 (997)
--..|||+.+. .. ....+++.|+++-- .+|-..+ .|.+..|+..+++ +++|.- +-+=+
T Consensus 66 ~v~lTFDDg~~--------~~---~~~~il~iL~k~~i~ATfFv~g------~~i~~~p~~~~~~---~~~Ghe-ig~H~ 124 (267)
T COG0726 66 AVALTFDDGPL--------DG---NTPRILPLLKKYGIKATFFVVG------SWIERNPDLVKRI---AEAGHE-IGNHG 124 (267)
T ss_pred eEEEEeecCCC--------CC---CcHHHHHHHHHcCCceEEEEeh------HhhHHCHHHHHHH---HhccCe-ehhCc
Confidence 34558888875 21 67788889988753 3555554 4556666544444 446765 77788
Q ss_pred eeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCC-ChhhHHHHhhhcCCc
Q 001910 133 WCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGH-SAVQAYLLGVELGFD 191 (997)
Q Consensus 133 Wv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGh-s~~~p~ll~~~~G~~ 191 (997)
|--.+....+.+.+..++...+..+.+..|..|+ |..-|.|. +...-.+.+ ..|+.
T Consensus 125 ~~h~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~~--~~r~p~g~~~~~~~~~~~-~~g~~ 181 (267)
T COG0726 125 YDHPDLQDLSLEELGAEIARAHDILKKITGGRPR--GFRPPYGSYNESSLALAR-RLGYR 181 (267)
T ss_pred ccCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCc--eEECCCCccCHHHHHHHH-hCCCc
Confidence 8777777788888899999999999999999844 56667775 355666665 78876
No 33
>PRK12465 xylose isomerase; Provisional
Probab=27.24 E-value=94 Score=35.60 Aligned_cols=65 Identities=9% Similarity=0.122 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHHHHHhccccC--CCeEEEeecCCCCccchHHHHHHHHHHHHHHhc---CCceeEEEcChhhHH
Q 001910 263 YNVEQWVNDFIDAALTQANVTR--DNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNK---GGRVNALYSTPSLYT 332 (997)
Q Consensus 263 ~nv~~~~~~~~~~~~~~~~~~~--t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~---~~~~~i~~sT~~~Yf 332 (997)
...+.|++...+.+.+....|- ++.=++|.|.+.. +..+|++++++++.+ ...+++.+.|+..|.
T Consensus 85 ~~Ak~k~daaFEf~~kLG~~~~~FHD~D~~Peg~s~~-----E~~~nld~iv~~~k~~~~~tGikllw~TaNlFs 154 (445)
T PRK12465 85 ARAEAKSDAAFEFFTKLGVPYYCFHDIDLAPDADDIG-----EYESNLKHMVGIAKQRQADTGIKLLWGTANLFS 154 (445)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeeccccccCCCCCCHH-----HHHHHHHHHHHHHHHHhhhhCceeeeecccccc
Confidence 4456777777777777653331 2334577776543 344789999988874 357888999987664
No 34
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=23.64 E-value=1.3e+02 Score=31.91 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=57.5
Q ss_pred CccCCceEEEEEeccc------cCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhh
Q 001910 35 GVVAGKLNVHLVAHSH------DDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVG 108 (997)
Q Consensus 35 ~~~~~~~~VhlvpHSH------~D~gWl~t~~ey~~g~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w~~~ 108 (997)
...++.-+|++|-..- .=--|-+|.-=-- +....+--+-.++.-+++=|...|+..++.-|+.-...
T Consensus 146 ~~iPesGkI~lv~~~~~~~~~~V~~~~~~tlfLr~-------~~~~~rGWlldi~~cid~i~~~~FtL~diY~Fe~~L~~ 218 (254)
T PF06044_consen 146 SKIPESGKIFLVKNGQIIPPEEVLEQWQKTLFLRT-------QNIESRGWLLDIMKCIDKIPKNEFTLDDIYAFEDELQI 218 (254)
T ss_dssp GGS-GGG-EEEEETTEE--HHHHHHHHHHGGGGGG-------S-HHHHHHHHHHHHHHHHS-SSEEEHHHHHTTHHHHHH
T ss_pred ccCCCcceEEEEeCCeEcCHHHHHHHHHHHHHHHh-------ccccccchHHHHHHHHHhcCccceeHHHHHHHHHHHHH
Confidence 4457778888875432 2112333221100 11244556677888888888899999999999888888
Q ss_pred cChH-------HHHHHHHHHHcCCeEEEcee
Q 001910 109 QSPE-------IQEQVRKLVDASQLEFVNGG 132 (997)
Q Consensus 109 ~~p~-------~~~~vk~lV~~GrlE~v~Gg 132 (997)
..|. .|+++..|=..|-|||++-|
T Consensus 219 ~~P~N~~Ik~KIRQqLQ~LRD~g~IeFl~rG 249 (254)
T PF06044_consen 219 KYPNNNHIKAKIRQQLQILRDKGIIEFLGRG 249 (254)
T ss_dssp HSTT-S-HHHHHHHHHHHHHHTTSEEE-STT
T ss_pred hCCCCCChhHHHHHHHHHHhhCCceEEecCC
Confidence 8875 45666667789999999755
No 35
>PF10074 DUF2285: Uncharacterized conserved protein (DUF2285); InterPro: IPR018754 This entry contains uncharacterised proteins of unknown function.
Probab=21.68 E-value=17 Score=33.48 Aligned_cols=27 Identities=22% Similarity=0.663 Sum_probs=23.7
Q ss_pred HHHhhcChHHHHHHHHHHHcCCeEEEceee
Q 001910 104 RWWVGQSPEIQEQVRKLVDASQLEFVNGGW 133 (997)
Q Consensus 104 ~w~~~~~p~~~~~vk~lV~~GrlE~v~GgW 133 (997)
.||+. ...+.+++.||+.|++ +++|||
T Consensus 75 ~~W~~--~~~R~~~~rll~~a~~-l~~gGY 101 (106)
T PF10074_consen 75 DEWKD--SSLRRRVRRLLRRARA-LMEGGY 101 (106)
T ss_pred ccccC--hHHHHHHHHHHHHHHH-HHHhhH
Confidence 57765 7789999999999999 889998
No 36
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=20.70 E-value=1e+02 Score=23.43 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=23.4
Q ss_pred HHHhhcChHH-HHHHHHHHHcCCeEEEceeeee
Q 001910 104 RWWVGQSPEI-QEQVRKLVDASQLEFVNGGWCM 135 (997)
Q Consensus 104 ~w~~~~~p~~-~~~vk~lV~~GrlE~v~GgWv~ 135 (997)
.|..+..... +...+++|++|++ .|||-=+.
T Consensus 5 ~~L~~~~~~~sr~~a~~~I~~g~V-~VNg~~v~ 36 (48)
T PF01479_consen 5 KFLSRLGLASSRSEARRLIKQGRV-KVNGKVVK 36 (48)
T ss_dssp HHHHHTTSSSSHHHHHHHHHTTTE-EETTEEES
T ss_pred HHHHHcCCcCCHHHHHHhcCCCEE-EECCEEEc
Confidence 3444555554 9999999999999 68887655
No 37
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=20.63 E-value=3.1e+02 Score=33.68 Aligned_cols=95 Identities=21% Similarity=0.296 Sum_probs=66.8
Q ss_pred HHHHh-hcChHHHHHHHHHHH-----------cCCeEEEceee--eeecccCCChHHHHHHHHHH-HHHHHHHcCC---C
Q 001910 103 HRWWV-GQSPEIQEQVRKLVD-----------ASQLEFVNGGW--CMHDEATTHYVDMIDQTTLG-HHYIKQHFNK---T 164 (997)
Q Consensus 103 ~~w~~-~~~p~~~~~vk~lV~-----------~GrlE~v~GgW--v~~Dea~~~~es~I~ql~~G-~~~l~~~fG~---~ 164 (997)
.+|.. ..+|..++++++|++ ..+|+|=++|| +|.+..+.--...|.++..| -+||.+.+|. .
T Consensus 10 ~~wl~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~i~FGT~GiRG~~g~~~~~~n~~~v~~~~~a~a~~l~~~~~~~~~~ 89 (584)
T PTZ00150 10 ELWLKWDKDPETRKEIEELLASKDEEELKRRFLKRMEFGTAGLRGKMGAGFNCMNDLTVQQTAQGLCAYVIETFGQALKS 89 (584)
T ss_pred HHHHcCCCCHHHHHHHHHHHhCCCHHHHHHHhCCCCcccCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 56765 456777888888732 35789989999 88877666667788998888 5788888773 1
Q ss_pred CceeeecCCCCCChh----hHHHHhhhcCCcEEEEecc
Q 001910 165 PKAGWQIDPFGHSAV----QAYLLGVELGFDSVHFARI 198 (997)
Q Consensus 165 p~v~w~iD~FGhs~~----~p~ll~~~~G~~~~~~~Ri 198 (997)
..|.=--|.=-+|.. ++..|. .+|++-..+.++
T Consensus 90 ~~VvVg~D~R~~S~~fa~~~a~~L~-a~Gi~V~~~g~~ 126 (584)
T PTZ00150 90 RGVVIGYDGRYHSRRFAEITASVFL-SKGFKVYLFGQT 126 (584)
T ss_pred CcEEEEeCCCCCcHHHHHHHHHHHH-HCCCEEEEeCCC
Confidence 334445565444444 456665 789999999753
No 38
>PHA03393 odv-e66 occlusion-derived virus envelope protein E66; Provisional
Probab=20.24 E-value=2.2e+02 Score=35.10 Aligned_cols=111 Identities=15% Similarity=0.271 Sum_probs=72.5
Q ss_pred CchhhHHhhhccCCccchhhhHHHHHHHHHHHHHc--CCCCcEEEechHH--HHHHHhhcChHHHHHHHHHHHcCCeEEE
Q 001910 54 GWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRR--DPNRKFVFAEMAF--FHRWWVGQSPEIQEQVRKLVDASQLEFV 129 (997)
Q Consensus 54 gWl~t~~ey~~g~~~~~~~~~v~~il~~vl~~L~~--~p~~kF~~~e~~~--~~~w~~~~~p~~~~~vk~lV~~GrlE~v 129 (997)
.=|..||+||. ......-...-+| +|.|.|..++..| +.-| +...+-....+.|+.=|=
T Consensus 54 ~~L~~FE~yy~-----------~TL~~~f~qkaeki~nptr~f~~d~~iF~~L~Pw--~sa~dFgt~~hTLigY~v---- 116 (682)
T PHA03393 54 DDLDTFERYYK-----------NTLTQKFLQKAEKIANPTRQFSDDDNIFDGLSPW--TSANDFGTLCHTLIGYCV---- 116 (682)
T ss_pred hHHHHHHHHHH-----------HHHHHHHHhhhhhhcCCcccccCCCceecCCccc--cCHHHHHHHHHHHHhheE----
Confidence 45899999996 1122223334444 8898899777666 3233 223344455566654432
Q ss_pred ceeeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCC-------CChhhHHHHh
Q 001910 130 NGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFG-------HSAVQAYLLG 185 (997)
Q Consensus 130 ~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FG-------hs~~~p~ll~ 185 (997)
=|..++.++-.-..+..+|..|.+++.+++...+. ++-.|+| .|=+||..|.
T Consensus 117 --ry~~~~d~lY~d~~LA~nL~~aL~~I~~~LP~p~p--~~qaPWG~~~dWy~FsItmPE~~m 175 (682)
T PHA03393 117 --RYNNPNDALYQDPELAYNLINALRLIYSHLPDPAP--HQQAPWGPVADWYHFSITMPECFM 175 (682)
T ss_pred --EecCCCccccCCHHHHHHHHHHHHHHHhcCCCCCc--ccCCCCCCcCceeeEEccHHHHHH
Confidence 24556666777788999999999999999998763 2445666 6778888773
No 39
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=20.14 E-value=4.5e+02 Score=20.97 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCCcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecc
Q 001910 81 SVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDE 138 (997)
Q Consensus 81 ~vl~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~De 138 (997)
.+++.|.+++. ....|. .+-+.-...+.+..+..|.+.|.+.=+.||++..|+
T Consensus 4 ~Il~~l~~~~~--~s~~el---a~~~~VS~~TiRRDl~~L~~~g~i~r~~GG~~~~~~ 56 (57)
T PF08220_consen 4 QILELLKEKGK--VSVKEL---AEEFGVSEMTIRRDLNKLEKQGLIKRTHGGAVLNDS 56 (57)
T ss_pred HHHHHHHHcCC--EEHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEEcCEEEeCCC
Confidence 45666666543 332333 334555566789999999999999999999977664
Done!