Query 001911
Match_columns 997
No_of_seqs 767 out of 4858
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 12:11:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6.7E-84 1.4E-88 787.3 76.5 674 201-954 52-726 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3E-80 6.5E-85 755.2 73.1 672 232-986 48-723 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.3E-67 2.9E-72 626.6 70.4 548 231-850 366-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 3.1E-66 6.6E-71 615.0 70.0 544 267-883 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2E-61 4.3E-66 575.3 52.2 471 202-741 89-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.8E-61 3.9E-66 575.7 47.6 587 299-970 84-696 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.6E-43 1.6E-47 439.0 101.1 798 135-982 96-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-42 4.3E-47 435.2 101.7 803 135-986 62-869 (899)
9 PRK11447 cellulose synthase su 100.0 5.3E-27 1.1E-31 293.6 82.5 672 203-982 31-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.3E-26 2.9E-31 290.0 78.3 659 171-947 34-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.2E-24 4.7E-29 256.3 72.2 683 176-970 55-760 (987)
12 PRK09782 bacteriophage N4 rece 100.0 7.2E-23 1.6E-27 243.4 73.7 637 211-981 55-738 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 3.7E-23 7.9E-28 215.3 39.5 457 458-982 58-518 (966)
14 KOG2002 TPR-containing nuclear 99.9 3.1E-20 6.6E-25 204.9 63.8 564 318-983 146-745 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 2.1E-22 4.6E-27 209.7 37.4 437 486-989 51-491 (966)
16 KOG2002 TPR-containing nuclear 99.9 5E-19 1.1E-23 195.4 61.8 706 131-986 26-801 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-18 2.6E-23 205.2 51.9 184 653-841 308-494 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-17 3.3E-22 195.8 54.4 254 687-948 307-571 (615)
19 KOG2076 RNA polymerase III tra 99.9 3.5E-15 7.5E-20 164.5 62.4 680 178-981 152-893 (895)
20 PRK10049 pgaA outer membrane p 99.9 2.8E-17 6E-22 196.9 47.9 409 522-984 19-457 (765)
21 PRK15174 Vi polysaccharide exp 99.8 3.4E-17 7.4E-22 191.7 47.0 259 560-842 49-312 (656)
22 PRK11788 tetratricopeptide rep 99.8 3.2E-18 7E-23 191.6 36.3 301 493-815 45-354 (389)
23 PRK15174 Vi polysaccharide exp 99.8 1.5E-17 3.2E-22 194.8 42.7 333 591-986 45-384 (656)
24 PRK11788 tetratricopeptide rep 99.8 3.8E-18 8.3E-23 191.0 36.3 298 525-845 42-349 (389)
25 PRK10049 pgaA outer membrane p 99.8 8.1E-17 1.8E-21 192.9 49.7 426 446-964 13-470 (765)
26 PRK14574 hmsH outer membrane p 99.8 1.6E-15 3.4E-20 177.4 53.0 442 495-986 46-516 (822)
27 KOG2076 RNA polymerase III tra 99.8 5.7E-14 1.2E-18 155.1 61.3 637 241-984 145-850 (895)
28 PRK14574 hmsH outer membrane p 99.8 5.5E-15 1.2E-19 172.9 53.4 451 458-971 44-534 (822)
29 KOG0495 HAT repeat protein [RN 99.8 1.1E-12 2.5E-17 138.9 64.5 642 215-953 218-883 (913)
30 KOG4422 Uncharacterized conser 99.8 1.1E-13 2.4E-18 139.3 46.7 436 213-739 128-591 (625)
31 KOG4318 Bicoid mRNA stability 99.8 1.6E-13 3.5E-18 150.3 51.4 751 159-975 19-864 (1088)
32 KOG0495 HAT repeat protein [RN 99.8 4.7E-11 1E-15 126.9 64.9 411 438-914 469-883 (913)
33 KOG4318 Bicoid mRNA stability 99.7 3.1E-13 6.8E-18 148.1 43.9 251 186-463 11-286 (1088)
34 KOG2003 TPR repeat-containing 99.7 1.8E-14 3.9E-19 145.4 31.2 482 451-979 204-718 (840)
35 KOG4422 Uncharacterized conser 99.7 1.8E-12 4E-17 130.6 43.4 362 369-809 204-591 (625)
36 KOG2003 TPR repeat-containing 99.7 1.3E-12 2.9E-17 132.2 36.7 287 526-840 427-719 (840)
37 KOG0985 Vesicle coat protein c 99.6 1.8E-09 3.9E-14 120.1 61.9 349 135-507 334-748 (1666)
38 TIGR00540 hemY_coli hemY prote 99.6 4.4E-13 9.5E-18 149.1 34.5 294 650-985 95-401 (409)
39 KOG2804 Phosphorylcholine tran 99.6 3.3E-17 7.1E-22 156.0 -2.0 66 18-92 74-144 (348)
40 PRK10747 putative protoheme IX 99.6 3E-12 6.4E-17 141.5 34.9 285 652-982 97-389 (398)
41 KOG1126 DNA-binding cell divis 99.6 4.5E-13 9.8E-18 143.7 24.9 283 653-985 333-622 (638)
42 PF13429 TPR_15: Tetratricopep 99.6 1.2E-14 2.6E-19 153.5 12.5 260 679-982 13-276 (280)
43 KOG0547 Translocase of outer m 99.6 1.4E-11 3E-16 126.8 33.4 226 686-947 338-565 (606)
44 KOG4162 Predicted calmodulin-b 99.6 5E-09 1.1E-13 114.7 54.2 417 513-984 318-784 (799)
45 KOG0547 Translocase of outer m 99.6 3.3E-11 7.1E-16 124.1 35.1 406 455-911 122-566 (606)
46 KOG1155 Anaphase-promoting com 99.5 1.1E-10 2.4E-15 119.6 37.3 291 647-982 235-535 (559)
47 KOG1155 Anaphase-promoting com 99.5 1.5E-09 3.2E-14 111.5 44.2 373 478-910 159-535 (559)
48 KOG1915 Cell cycle control pro 99.5 7.4E-09 1.6E-13 106.5 48.8 455 429-947 89-584 (677)
49 KOG1915 Cell cycle control pro 99.5 3.7E-09 8E-14 108.6 46.4 450 481-962 71-548 (677)
50 KOG1173 Anaphase-promoting com 99.5 3.6E-10 7.7E-15 119.1 40.0 280 636-955 241-523 (611)
51 PF13429 TPR_15: Tetratricopep 99.5 8.9E-14 1.9E-18 146.9 13.2 261 644-947 13-276 (280)
52 PRK10747 putative protoheme IX 99.5 4.4E-11 9.5E-16 132.2 34.9 282 601-947 97-389 (398)
53 KOG3785 Uncharacterized conser 99.5 2.5E-09 5.3E-14 105.8 41.5 459 274-829 61-536 (557)
54 TIGR00540 hemY_coli hemY prote 99.5 8.5E-11 1.8E-15 130.8 34.0 288 599-947 95-398 (409)
55 KOG0985 Vesicle coat protein c 99.5 1.2E-07 2.6E-12 106.0 56.9 549 209-841 652-1306(1666)
56 KOG1156 N-terminal acetyltrans 99.5 3.9E-09 8.4E-14 113.2 43.7 456 460-983 19-511 (700)
57 KOG1173 Anaphase-promoting com 99.5 1.7E-09 3.7E-14 114.1 40.3 284 516-823 242-531 (611)
58 KOG1156 N-terminal acetyltrans 99.5 7E-08 1.5E-12 103.8 52.5 438 249-739 21-469 (700)
59 COG3071 HemY Uncharacterized e 99.4 1.1E-09 2.3E-14 111.2 34.4 285 652-981 97-388 (400)
60 KOG1126 DNA-binding cell divis 99.4 5.3E-11 1.1E-15 128.1 26.2 284 498-808 334-620 (638)
61 COG2956 Predicted N-acetylgluc 99.4 4.3E-10 9.3E-15 110.2 29.6 257 566-840 48-308 (389)
62 KOG4162 Predicted calmodulin-b 99.4 7.9E-08 1.7E-12 105.6 49.8 479 460-985 239-751 (799)
63 COG2956 Predicted N-acetylgluc 99.4 1.1E-09 2.4E-14 107.4 31.3 228 594-843 113-347 (389)
64 KOG1127 TPR repeat-containing 99.4 9E-07 2E-11 99.7 57.0 196 200-399 492-698 (1238)
65 KOG1174 Anaphase-promoting com 99.4 1.6E-08 3.5E-13 102.4 39.2 305 635-984 190-501 (564)
66 COG3071 HemY Uncharacterized e 99.4 2.9E-09 6.3E-14 108.1 33.4 286 460-771 96-388 (400)
67 KOG2047 mRNA splicing factor [ 99.4 1.7E-06 3.7E-11 93.0 57.3 298 641-947 389-718 (835)
68 KOG3616 Selective LIM binding 99.3 2.6E-07 5.6E-12 99.9 46.6 569 284-987 545-1138(1636)
69 KOG3617 WD40 and TPR repeat-co 99.3 2E-06 4.4E-11 94.6 53.7 149 164-328 725-884 (1416)
70 KOG1174 Anaphase-promoting com 99.3 4.7E-08 1E-12 99.1 37.6 272 636-953 229-503 (564)
71 KOG3785 Uncharacterized conser 99.3 2.8E-08 6E-13 98.5 34.8 445 458-947 32-489 (557)
72 TIGR02521 type_IV_pilW type IV 99.3 1E-09 2.2E-14 113.2 26.7 201 743-982 30-231 (234)
73 KOG3616 Selective LIM binding 99.3 3.4E-06 7.3E-11 91.5 52.8 543 206-908 621-1181(1636)
74 PF12569 NARP1: NMDA receptor- 99.3 9.3E-08 2E-12 106.5 42.1 305 456-772 12-333 (517)
75 KOG1129 TPR repeat-containing 99.3 3E-10 6.6E-15 110.9 18.9 236 675-953 224-461 (478)
76 PRK12370 invasion protein regu 99.3 1.5E-09 3.2E-14 125.6 28.3 252 690-988 277-540 (553)
77 KOG1127 TPR repeat-containing 99.3 4.2E-06 9.1E-11 94.5 52.6 187 208-400 467-658 (1238)
78 KOG1129 TPR repeat-containing 99.3 6.9E-10 1.5E-14 108.5 20.6 232 712-983 226-458 (478)
79 KOG2047 mRNA splicing factor [ 99.3 7.6E-06 1.7E-10 88.2 60.3 582 153-842 70-686 (835)
80 TIGR02521 type_IV_pilW type IV 99.3 3.4E-09 7.4E-14 109.2 27.0 200 709-947 31-231 (234)
81 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 3E-16 90.2 6.4 50 300-349 1-50 (50)
82 PRK12370 invasion protein regu 99.2 3.8E-09 8.3E-14 122.3 29.0 250 653-948 275-535 (553)
83 KOG1840 Kinesin light chain [C 99.2 5.4E-09 1.2E-13 114.5 27.3 241 715-982 205-478 (508)
84 KOG1840 Kinesin light chain [C 99.2 1.5E-08 3.3E-13 111.0 30.2 247 674-947 199-478 (508)
85 KOG3617 WD40 and TPR repeat-co 99.2 1.9E-05 4.2E-10 87.1 50.8 147 130-298 724-886 (1416)
86 PF12569 NARP1: NMDA receptor- 99.2 5.4E-08 1.2E-12 108.3 32.1 291 647-982 12-333 (517)
87 PF13041 PPR_2: PPR repeat fam 99.2 9.1E-11 2E-15 85.9 6.9 50 370-419 1-50 (50)
88 KOG2376 Signal recognition par 99.2 3.5E-06 7.7E-11 90.1 43.4 188 758-980 321-517 (652)
89 KOG2376 Signal recognition par 99.2 2.9E-06 6.4E-11 90.7 42.4 474 203-767 15-514 (652)
90 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-08 2.6E-13 107.9 24.8 240 686-969 38-286 (296)
91 PRK11189 lipoprotein NlpI; Pro 99.1 5.7E-08 1.2E-12 102.7 27.7 228 649-913 36-267 (296)
92 COG3063 PilF Tfp pilus assembl 99.1 6.2E-08 1.3E-12 91.2 23.3 196 746-980 37-233 (250)
93 KOG0548 Molecular co-chaperone 99.1 9E-07 1.9E-11 93.8 34.3 104 456-563 10-114 (539)
94 KOG0624 dsRNA-activated protei 99.1 5.9E-07 1.3E-11 89.0 30.7 209 716-953 162-373 (504)
95 KOG0548 Molecular co-chaperone 99.1 5.2E-07 1.1E-11 95.5 31.9 353 596-984 10-456 (539)
96 KOG1125 TPR repeat-containing 99.0 3.1E-08 6.7E-13 105.4 20.7 223 753-983 294-527 (579)
97 cd05804 StaR_like StaR_like; a 99.0 7.9E-07 1.7E-11 98.1 33.0 319 638-993 5-346 (355)
98 KOG4340 Uncharacterized conser 99.0 3.3E-07 7.2E-12 88.9 24.6 122 717-840 249-372 (459)
99 COG3063 PilF Tfp pilus assembl 99.0 5.6E-07 1.2E-11 84.9 24.4 199 641-843 37-236 (250)
100 KOG1125 TPR repeat-containing 98.9 1.7E-07 3.6E-12 100.0 21.7 248 685-977 296-565 (579)
101 KOG4340 Uncharacterized conser 98.9 4.3E-06 9.4E-11 81.4 28.4 236 168-412 13-282 (459)
102 KOG0624 dsRNA-activated protei 98.8 1.9E-05 4E-10 78.7 31.3 316 517-914 37-373 (504)
103 PF04733 Coatomer_E: Coatomer 98.8 1.9E-07 4.2E-12 96.9 17.9 253 648-953 10-268 (290)
104 PLN02789 farnesyltranstransfer 98.8 2.7E-06 5.9E-11 89.6 26.7 216 722-980 50-299 (320)
105 cd05804 StaR_like StaR_like; a 98.8 1.3E-05 2.9E-10 88.3 33.8 198 644-842 119-335 (355)
106 PRK04841 transcriptional regul 98.7 4.6E-05 9.9E-10 95.7 39.7 161 682-842 460-640 (903)
107 TIGR03302 OM_YfiO outer membra 98.7 1E-06 2.2E-11 90.6 19.7 171 778-982 32-231 (235)
108 KOG1128 Uncharacterized conser 98.7 1.2E-06 2.7E-11 95.9 19.4 217 714-986 403-619 (777)
109 PRK04841 transcriptional regul 98.7 4.9E-05 1.1E-09 95.5 36.9 385 523-949 346-761 (903)
110 PLN02789 farnesyltranstransfer 98.7 3.1E-05 6.8E-10 81.6 28.9 224 685-952 48-304 (320)
111 TIGR03302 OM_YfiO outer membra 98.6 3.2E-06 6.9E-11 86.9 20.3 187 743-948 32-232 (235)
112 PF04733 Coatomer_E: Coatomer 98.6 1.2E-06 2.7E-11 91.0 17.1 249 683-983 10-265 (290)
113 PRK10370 formate-dependent nit 98.6 3.4E-06 7.4E-11 82.7 18.8 118 792-947 52-172 (198)
114 KOG2053 Mitochondrial inherita 98.6 0.0027 5.9E-08 72.1 47.3 94 712-807 439-535 (932)
115 KOG2053 Mitochondrial inherita 98.6 0.0027 6E-08 72.1 44.1 192 458-669 53-256 (932)
116 PF12854 PPR_1: PPR repeat 98.6 8.1E-08 1.8E-12 62.7 3.9 33 297-329 2-34 (34)
117 PRK15359 type III secretion sy 98.6 2.3E-06 5E-11 79.3 15.2 122 800-964 14-136 (144)
118 PRK15179 Vi polysaccharide bio 98.5 1.2E-05 2.7E-10 93.4 23.3 134 775-948 82-217 (694)
119 KOG1128 Uncharacterized conser 98.5 3.6E-05 7.7E-10 84.8 24.5 219 671-947 395-615 (777)
120 COG5010 TadD Flp pilus assembl 98.5 2.4E-05 5.1E-10 76.0 20.3 158 748-944 70-227 (257)
121 PF12854 PPR_1: PPR repeat 98.5 1.9E-07 4.2E-12 61.0 4.0 32 367-398 2-33 (34)
122 KOG3060 Uncharacterized conser 98.5 9.6E-05 2.1E-09 71.1 23.1 156 752-947 60-219 (289)
123 PRK15359 type III secretion sy 98.5 1.9E-06 4.1E-11 79.8 11.7 97 885-986 27-124 (144)
124 PRK15363 pathogenicity island 98.4 2.4E-06 5.1E-11 77.3 11.5 99 881-984 34-133 (157)
125 KOG1070 rRNA processing protei 98.4 0.0001 2.2E-09 86.7 27.4 245 571-833 1443-1690(1710)
126 KOG1914 mRNA cleavage and poly 98.4 0.0049 1.1E-07 66.1 41.8 76 300-380 18-94 (656)
127 COG5010 TadD Flp pilus assembl 98.4 5.9E-05 1.3E-09 73.3 21.0 157 783-979 70-227 (257)
128 PRK15179 Vi polysaccharide bio 98.4 6.9E-05 1.5E-09 87.3 25.1 213 673-945 27-242 (694)
129 KOG3081 Vesicle coat complex C 98.4 0.00041 8.9E-09 67.4 25.0 253 648-954 17-275 (299)
130 PRK10370 formate-dependent nit 98.4 4.5E-05 9.8E-10 74.8 19.2 101 881-986 72-176 (198)
131 COG4783 Putative Zn-dependent 98.3 7.4E-05 1.6E-09 79.0 21.3 120 786-945 313-434 (484)
132 KOG3060 Uncharacterized conser 98.3 0.00018 4E-09 69.2 21.0 187 757-984 25-221 (289)
133 KOG1070 rRNA processing protei 98.3 0.00037 7.9E-09 82.3 27.4 132 673-807 1457-1592(1710)
134 TIGR02552 LcrH_SycD type III s 98.3 1.3E-05 2.9E-10 73.9 12.9 99 882-985 17-116 (135)
135 PRK14720 transcript cleavage f 98.3 0.00013 2.9E-09 85.5 23.5 240 635-930 27-268 (906)
136 KOG3081 Vesicle coat complex C 98.3 0.0012 2.7E-08 64.2 25.6 170 662-842 96-270 (299)
137 PF09976 TPR_21: Tetratricopep 98.2 4E-05 8.6E-10 71.5 15.2 95 884-980 50-144 (145)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.3E-05 1.1E-09 81.4 17.5 124 816-981 171-295 (395)
139 COG4783 Putative Zn-dependent 98.2 0.00013 2.9E-09 77.1 19.4 173 776-991 271-445 (484)
140 TIGR02552 LcrH_SycD type III s 98.2 6.5E-05 1.4E-09 69.3 15.0 112 801-953 5-117 (135)
141 KOG0550 Molecular chaperone (D 98.1 7.8E-05 1.7E-09 76.6 16.0 291 648-986 58-353 (486)
142 TIGR02795 tol_pal_ybgF tol-pal 98.1 3.7E-05 8.1E-10 69.1 12.3 101 883-985 3-107 (119)
143 KOG0553 TPR repeat-containing 98.1 1.9E-05 4.2E-10 78.1 10.4 98 886-988 85-183 (304)
144 PF12895 Apc3: Anaphase-promot 98.1 7.2E-06 1.6E-10 68.0 6.0 81 895-979 2-83 (84)
145 PRK14720 transcript cleavage f 98.1 0.00096 2.1E-08 78.6 25.2 236 484-790 32-268 (906)
146 KOG1914 mRNA cleavage and poly 98.0 0.037 8.1E-07 59.6 44.2 187 655-843 309-501 (656)
147 PRK15363 pathogenicity island 98.0 0.00062 1.3E-08 61.9 16.5 99 813-948 34-132 (157)
148 cd00189 TPR Tetratricopeptide 97.9 0.00012 2.6E-09 62.5 11.3 96 884-984 2-98 (100)
149 TIGR00756 PPR pentatricopeptid 97.9 1.5E-05 3.3E-10 53.1 4.0 34 303-336 1-34 (35)
150 PLN03088 SGT1, suppressor of 97.9 0.00013 2.8E-09 79.1 12.8 91 889-984 9-100 (356)
151 KOG1130 Predicted G-alpha GTPa 97.9 0.00013 2.9E-09 74.5 11.5 145 814-986 195-347 (639)
152 PF09976 TPR_21: Tetratricopep 97.9 0.00076 1.7E-08 62.8 15.9 126 746-908 14-144 (145)
153 PF14938 SNAP: Soluble NSF att 97.8 0.00085 1.8E-08 70.5 18.1 26 885-910 158-183 (282)
154 KOG0550 Molecular chaperone (D 97.8 0.0028 6E-08 65.6 20.5 282 596-953 57-355 (486)
155 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00051 1.1E-08 74.0 16.2 125 747-912 172-298 (395)
156 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00029 6.3E-09 63.2 12.4 106 815-953 3-108 (119)
157 CHL00033 ycf3 photosystem I as 97.8 0.00024 5.1E-09 68.3 12.3 97 882-980 35-139 (168)
158 PRK02603 photosystem I assembl 97.8 0.00036 7.8E-09 67.3 13.3 100 883-984 36-150 (172)
159 COG4700 Uncharacterized protei 97.8 0.0037 8.1E-08 57.2 18.2 131 811-977 86-216 (251)
160 TIGR00756 PPR pentatricopeptid 97.7 5.5E-05 1.2E-09 50.3 4.3 33 374-406 2-34 (35)
161 PLN02413 choline-phosphate cyt 97.7 3.5E-06 7.6E-11 82.8 -2.3 61 18-87 38-98 (294)
162 PF13432 TPR_16: Tetratricopep 97.7 0.00018 3.9E-09 56.1 7.5 61 888-953 3-63 (65)
163 KOG0553 TPR repeat-containing 97.7 0.00091 2E-08 66.6 13.7 110 822-971 89-200 (304)
164 PF13812 PPR_3: Pentatricopept 97.7 5.8E-05 1.3E-09 49.8 3.8 33 303-335 2-34 (34)
165 PLN03088 SGT1, suppressor of 97.7 0.00088 1.9E-08 72.7 15.1 109 820-967 8-117 (356)
166 PRK10803 tol-pal system protei 97.6 0.00056 1.2E-08 69.9 12.4 98 884-983 145-246 (263)
167 PRK10866 outer membrane biogen 97.6 0.0091 2E-07 60.7 21.0 56 924-981 180-239 (243)
168 PF13414 TPR_11: TPR repeat; P 97.6 0.00017 3.7E-09 57.1 6.8 62 919-982 3-66 (69)
169 PRK02603 photosystem I assembl 97.6 0.002 4.3E-08 62.1 15.4 117 814-969 35-166 (172)
170 PRK10803 tol-pal system protei 97.6 0.00077 1.7E-08 68.9 13.0 103 815-954 144-250 (263)
171 cd00189 TPR Tetratricopeptide 97.6 0.00079 1.7E-08 57.2 11.4 95 816-947 2-96 (100)
172 PRK10866 outer membrane biogen 97.6 0.023 4.9E-07 57.8 23.3 61 887-947 180-240 (243)
173 PF13414 TPR_11: TPR repeat; P 97.6 0.00021 4.5E-09 56.6 6.8 67 881-952 2-69 (69)
174 PF12895 Apc3: Anaphase-promot 97.6 0.00017 3.8E-09 59.7 6.4 83 827-945 2-84 (84)
175 PF13812 PPR_3: Pentatricopept 97.6 0.00012 2.5E-09 48.3 4.2 33 373-405 2-34 (34)
176 COG4235 Cytochrome c biogenesi 97.6 0.0021 4.6E-08 64.6 14.6 100 880-984 154-257 (287)
177 PF01535 PPR: PPR repeat; Int 97.6 8.8E-05 1.9E-09 47.6 3.4 31 303-333 1-31 (31)
178 PRK15331 chaperone protein Sic 97.5 0.00089 1.9E-08 61.1 10.0 95 883-982 38-133 (165)
179 KOG2041 WD40 repeat protein [G 97.5 0.28 6E-06 54.6 31.1 216 460-734 675-903 (1189)
180 PF13432 TPR_16: Tetratricopep 97.5 0.00048 1E-08 53.7 7.3 59 924-984 2-61 (65)
181 PF12688 TPR_5: Tetratrico pep 97.5 0.0021 4.6E-08 56.5 11.9 96 885-982 4-103 (120)
182 PF14559 TPR_19: Tetratricopep 97.4 0.00047 1E-08 54.4 6.1 56 893-953 2-57 (68)
183 KOG4555 TPR repeat-containing 97.3 0.0023 5.1E-08 54.7 9.9 101 887-990 48-151 (175)
184 PF10037 MRP-S27: Mitochondria 97.3 0.0033 7.2E-08 68.0 13.8 116 671-786 63-180 (429)
185 PF13525 YfiO: Outer membrane 97.3 0.03 6.4E-07 55.5 19.2 48 925-974 147-198 (203)
186 PF10037 MRP-S27: Mitochondria 97.3 0.0037 8.1E-08 67.7 13.5 125 477-601 60-186 (429)
187 CHL00033 ycf3 photosystem I as 97.3 0.0051 1.1E-07 59.0 13.4 115 795-944 15-138 (168)
188 KOG1130 Predicted G-alpha GTPa 97.3 0.005 1.1E-07 63.5 13.5 293 648-969 26-370 (639)
189 PF01535 PPR: PPR repeat; Int 97.3 0.00029 6.4E-09 45.1 3.3 29 374-402 2-30 (31)
190 PRK10153 DNA-binding transcrip 97.3 0.018 4E-07 65.3 19.4 146 774-959 332-491 (517)
191 PF14938 SNAP: Soluble NSF att 97.2 0.024 5.2E-07 59.6 19.1 84 862-945 170-263 (282)
192 PF08579 RPM2: Mitochondrial r 97.2 0.0042 9E-08 52.2 10.2 78 487-564 29-115 (120)
193 PRK15331 chaperone protein Sic 97.2 0.019 4.2E-07 52.6 15.1 107 817-963 40-146 (165)
194 PRK10153 DNA-binding transcrip 97.2 0.015 3.2E-07 66.1 17.8 139 810-986 333-485 (517)
195 PF08579 RPM2: Mitochondrial r 97.2 0.0059 1.3E-07 51.4 10.7 75 344-418 32-115 (120)
196 COG1729 Uncharacterized protei 97.2 0.0046 1E-07 61.4 11.8 96 885-982 144-243 (262)
197 PF13525 YfiO: Outer membrane 97.2 0.053 1.1E-06 53.7 19.7 54 887-940 146-199 (203)
198 COG3898 Uncharacterized membra 97.1 0.42 9.2E-06 49.7 30.5 291 642-980 85-389 (531)
199 COG3898 Uncharacterized membra 97.1 0.43 9.3E-06 49.6 31.7 290 521-843 85-392 (531)
200 PF14559 TPR_19: Tetratricopep 97.1 0.001 2.2E-08 52.4 5.6 55 930-986 2-57 (68)
201 PF13512 TPR_18: Tetratricopep 97.1 0.012 2.6E-07 52.7 12.3 97 884-982 12-127 (142)
202 COG4235 Cytochrome c biogenesi 97.1 0.018 4E-07 58.0 15.0 101 811-948 152-256 (287)
203 PF13371 TPR_9: Tetratricopept 97.0 0.0031 6.8E-08 50.5 7.4 60 889-953 2-61 (73)
204 PF05843 Suf: Suppressor of fo 96.9 0.014 3.1E-07 61.0 13.5 131 675-808 2-136 (280)
205 PF12688 TPR_5: Tetratrico pep 96.9 0.032 7E-07 49.1 13.4 64 884-947 40-103 (120)
206 COG1729 Uncharacterized protei 96.9 0.016 3.5E-07 57.6 12.6 105 816-954 144-248 (262)
207 PF06239 ECSIT: Evolutionarily 96.8 0.021 4.5E-07 54.7 12.2 100 299-417 44-148 (228)
208 PF13371 TPR_9: Tetratricopept 96.8 0.0037 8E-08 50.0 6.4 58 926-985 2-60 (73)
209 COG4700 Uncharacterized protei 96.8 0.24 5.1E-06 45.9 17.8 101 231-331 85-189 (251)
210 PF06239 ECSIT: Evolutionarily 96.7 0.022 4.8E-07 54.5 11.6 102 267-387 44-153 (228)
211 PF07079 DUF1347: Protein of u 96.7 1.1 2.4E-05 47.9 47.1 63 884-955 462-526 (549)
212 PF05843 Suf: Suppressor of fo 96.7 0.041 9E-07 57.5 14.6 132 710-844 2-137 (280)
213 PF13512 TPR_18: Tetratricopep 96.7 0.051 1.1E-06 48.7 12.8 107 814-953 10-131 (142)
214 KOG1538 Uncharacterized conser 96.6 0.14 3E-06 56.4 18.0 93 637-734 554-657 (1081)
215 KOG0543 FKBP-type peptidyl-pro 96.6 0.027 5.8E-07 59.0 12.3 96 882-982 257-354 (397)
216 PRK11906 transcriptional regul 96.6 0.11 2.4E-06 56.1 17.0 94 881-980 337-433 (458)
217 PF10300 DUF3808: Protein of u 96.6 0.084 1.8E-06 59.6 17.3 182 764-984 177-377 (468)
218 KOG4234 TPR repeat-containing 96.5 0.018 3.9E-07 53.6 9.1 101 887-989 100-203 (271)
219 COG4105 ComL DNA uptake lipopr 96.5 0.37 8E-06 47.8 18.5 166 790-980 45-230 (254)
220 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.012 2.5E-07 63.3 8.8 70 879-948 71-141 (453)
221 PF03704 BTAD: Bacterial trans 96.4 0.13 2.7E-06 48.0 15.1 70 884-956 64-138 (146)
222 PF13424 TPR_12: Tetratricopep 96.4 0.0065 1.4E-07 49.4 5.4 64 884-947 7-74 (78)
223 KOG1941 Acetylcholine receptor 96.4 0.14 3E-06 52.5 15.3 178 746-947 85-274 (518)
224 COG5107 RNA14 Pre-mRNA 3'-end 96.4 1.8 4E-05 46.0 38.2 143 674-822 397-543 (660)
225 PF13424 TPR_12: Tetratricopep 96.3 0.0055 1.2E-07 49.8 4.6 64 919-982 5-74 (78)
226 COG0457 NrfG FOG: TPR repeat [ 96.3 1.4 3.1E-05 44.5 30.0 220 688-947 37-264 (291)
227 PF07079 DUF1347: Protein of u 96.3 2 4.4E-05 46.0 47.5 49 301-349 127-179 (549)
228 KOG2041 WD40 repeat protein [G 96.2 2.8 6.2E-05 47.1 31.8 171 200-397 692-877 (1189)
229 PF04840 Vps16_C: Vps16, C-ter 96.2 2.1 4.6E-05 45.4 27.9 111 746-909 179-289 (319)
230 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.039 8.5E-07 59.3 11.1 69 917-987 73-146 (453)
231 COG0457 NrfG FOG: TPR repeat [ 96.2 1.8 3.8E-05 43.9 32.9 224 723-982 37-264 (291)
232 KOG1538 Uncharacterized conser 96.1 0.56 1.2E-05 51.9 19.3 78 519-609 748-825 (1081)
233 PRK11906 transcriptional regul 96.1 0.2 4.4E-06 54.2 15.8 84 896-984 318-402 (458)
234 KOG0543 FKBP-type peptidyl-pro 95.9 0.092 2E-06 55.2 12.0 97 815-948 258-355 (397)
235 KOG2796 Uncharacterized conser 95.9 2 4.3E-05 42.4 25.9 136 747-916 180-320 (366)
236 KOG2796 Uncharacterized conser 95.9 2 4.4E-05 42.4 23.3 140 676-818 179-323 (366)
237 KOG1550 Extracellular protein 95.8 4.9 0.00011 46.7 26.7 284 655-985 228-540 (552)
238 KOG2280 Vacuolar assembly/sort 95.8 5.1 0.00011 45.9 34.1 86 745-840 685-770 (829)
239 KOG2610 Uncharacterized conser 95.7 0.47 1E-05 48.3 15.4 150 791-979 115-272 (491)
240 COG4105 ComL DNA uptake lipopr 95.7 2.5 5.4E-05 42.2 23.1 188 745-954 36-237 (254)
241 PF13281 DUF4071: Domain of un 95.6 1.9 4E-05 46.2 20.5 77 749-825 146-228 (374)
242 KOG2114 Vacuolar assembly/sort 95.6 6 0.00013 45.9 26.3 181 448-665 334-516 (933)
243 KOG1941 Acetylcholine receptor 95.6 0.31 6.7E-06 50.1 13.9 233 721-983 18-275 (518)
244 PF13431 TPR_17: Tetratricopep 95.6 0.013 2.7E-07 38.2 2.7 31 942-974 2-33 (34)
245 COG0615 TagD Cytidylyltransfer 95.5 0.0013 2.8E-08 58.0 -2.6 58 18-85 12-69 (140)
246 PF13428 TPR_14: Tetratricopep 95.5 0.033 7.3E-07 39.0 4.8 39 921-961 3-42 (44)
247 KOG2280 Vacuolar assembly/sort 95.5 6.5 0.00014 45.1 31.7 84 879-979 712-795 (829)
248 COG5107 RNA14 Pre-mRNA 3'-end 95.4 4.7 0.0001 43.1 38.0 145 639-789 397-545 (660)
249 PF13428 TPR_14: Tetratricopep 95.3 0.035 7.6E-07 38.9 4.6 42 883-927 2-43 (44)
250 KOG1586 Protein required for f 95.3 1.6 3.4E-05 42.4 16.5 22 890-911 162-183 (288)
251 PF03704 BTAD: Bacterial trans 95.0 0.22 4.8E-06 46.3 10.3 71 746-817 64-139 (146)
252 PF13281 DUF4071: Domain of un 95.0 4.7 0.0001 43.3 20.9 71 757-829 195-274 (374)
253 KOG1920 IkappaB kinase complex 94.9 5.8 0.00013 48.0 23.2 50 886-945 1003-1052(1265)
254 COG2976 Uncharacterized protei 94.9 0.49 1.1E-05 44.6 11.7 96 887-984 94-189 (207)
255 PF10300 DUF3808: Protein of u 94.9 1.3 2.8E-05 50.1 17.8 163 749-947 193-375 (468)
256 COG4785 NlpI Lipoprotein NlpI, 94.9 1.3 2.8E-05 42.4 14.4 31 919-949 237-267 (297)
257 PF09205 DUF1955: Domain of un 94.8 1.8 3.9E-05 37.9 14.0 60 925-985 92-151 (161)
258 COG3118 Thioredoxin domain-con 94.8 1.1 2.4E-05 45.4 14.7 150 785-972 140-290 (304)
259 PF04840 Vps16_C: Vps16, C-ter 94.8 6.8 0.00015 41.6 31.5 109 641-769 179-287 (319)
260 KOG1920 IkappaB kinase complex 94.6 5.5 0.00012 48.1 22.0 31 636-667 788-820 (1265)
261 COG4785 NlpI Lipoprotein NlpI, 94.6 2 4.4E-05 41.1 15.0 161 744-911 99-266 (297)
262 PF04053 Coatomer_WDAD: Coatom 94.5 1.3 2.7E-05 49.4 16.1 27 883-909 348-374 (443)
263 PF02259 FAT: FAT domain; Int 94.4 7.7 0.00017 42.4 22.7 53 646-702 5-57 (352)
264 KOG4648 Uncharacterized conser 94.3 0.13 2.8E-06 52.1 7.1 96 886-986 101-197 (536)
265 KOG2803 Choline phosphate cyti 94.2 0.0071 1.5E-07 60.0 -1.9 57 18-85 19-75 (358)
266 PF13170 DUF4003: Protein of u 94.0 5.5 0.00012 41.8 18.8 132 464-597 78-226 (297)
267 KOG4234 TPR repeat-containing 93.9 0.7 1.5E-05 43.5 10.4 108 822-963 103-211 (271)
268 PF13431 TPR_17: Tetratricopep 93.9 0.052 1.1E-06 35.4 2.3 32 905-939 2-33 (34)
269 smart00299 CLH Clathrin heavy 93.7 2.5 5.4E-05 38.9 14.3 83 750-840 13-95 (140)
270 KOG2610 Uncharacterized conser 93.6 2.1 4.6E-05 43.8 14.0 121 824-980 113-235 (491)
271 PF04184 ST7: ST7 protein; In 93.6 12 0.00025 41.2 20.2 59 783-841 263-322 (539)
272 COG3118 Thioredoxin domain-con 93.6 7.3 0.00016 39.7 17.6 149 682-833 142-291 (304)
273 PF09205 DUF1955: Domain of un 93.4 5.1 0.00011 35.2 14.6 140 650-811 13-152 (161)
274 PF12921 ATP13: Mitochondrial 93.4 2.7 5.8E-05 37.5 13.0 96 301-416 1-97 (126)
275 cd02174 CCT CTP:phosphocholine 93.3 0.0097 2.1E-07 54.9 -2.5 61 17-86 12-72 (150)
276 KOG4555 TPR repeat-containing 93.3 1.3 2.8E-05 38.6 10.2 92 752-844 51-145 (175)
277 PF10602 RPN7: 26S proteasome 93.3 2.1 4.5E-05 41.0 13.2 99 883-981 37-140 (177)
278 PF04053 Coatomer_WDAD: Coatom 93.2 3 6.5E-05 46.5 16.1 157 210-398 271-428 (443)
279 PF12921 ATP13: Mitochondrial 93.2 0.93 2E-05 40.4 9.8 30 587-616 1-30 (126)
280 PF13170 DUF4003: Protein of u 93.0 12 0.00026 39.3 19.2 137 388-561 78-225 (297)
281 PF02259 FAT: FAT domain; Int 93.0 7.9 0.00017 42.3 19.4 108 882-989 146-293 (352)
282 KOG1586 Protein required for f 92.9 3 6.5E-05 40.6 13.1 65 885-949 116-184 (288)
283 KOG1585 Protein required for f 92.9 2.7 5.9E-05 41.1 12.9 141 202-358 93-248 (308)
284 smart00299 CLH Clathrin heavy 92.9 3.8 8.2E-05 37.6 14.1 48 129-178 7-54 (140)
285 KOG2114 Vacuolar assembly/sort 92.9 24 0.00052 41.4 26.8 120 168-295 337-456 (933)
286 COG4649 Uncharacterized protei 92.6 4.1 8.8E-05 37.7 12.9 135 814-982 59-195 (221)
287 PF13176 TPR_7: Tetratricopept 92.6 0.19 4.2E-06 33.2 3.7 26 956-981 1-26 (36)
288 KOG1258 mRNA processing protei 92.6 21 0.00047 40.2 36.3 129 485-616 47-179 (577)
289 PF00515 TPR_1: Tetratricopept 92.1 0.29 6.2E-06 31.8 4.0 26 922-947 4-29 (34)
290 PF10602 RPN7: 26S proteasome 92.1 3 6.4E-05 40.0 12.4 68 196-263 32-101 (177)
291 KOG3941 Intermediate in Toll s 92.0 1.4 3.1E-05 43.8 10.1 87 249-352 86-173 (406)
292 PF13176 TPR_7: Tetratricopept 91.4 0.35 7.5E-06 32.0 3.8 25 885-909 2-26 (36)
293 PF07719 TPR_2: Tetratricopept 91.4 0.38 8.2E-06 31.1 4.0 24 924-947 6-29 (34)
294 KOG2066 Vacuolar assembly/sort 91.3 34 0.00074 39.8 27.0 169 206-400 362-533 (846)
295 PF07719 TPR_2: Tetratricopept 91.3 0.41 8.8E-06 31.0 4.1 31 954-984 1-31 (34)
296 KOG3941 Intermediate in Toll s 91.3 1.8 3.9E-05 43.2 9.9 32 798-829 142-173 (406)
297 KOG3364 Membrane protein invol 91.2 1.3 2.8E-05 39.0 7.9 74 917-991 30-108 (149)
298 KOG1550 Extracellular protein 91.2 35 0.00076 39.8 25.2 145 689-843 379-538 (552)
299 PF00515 TPR_1: Tetratricopept 91.2 0.39 8.4E-06 31.1 3.9 32 955-986 2-33 (34)
300 PF09986 DUF2225: Uncharacteri 90.8 1.7 3.8E-05 43.0 9.7 92 894-985 89-196 (214)
301 KOG0890 Protein kinase of the 90.3 78 0.0017 42.2 26.8 62 882-948 1670-1731(2382)
302 COG1747 Uncharacterized N-term 90.2 33 0.00072 37.8 24.1 165 743-912 65-235 (711)
303 PF08631 SPO22: Meiosis protei 90.1 27 0.00058 36.6 26.9 161 650-814 4-192 (278)
304 COG4649 Uncharacterized protei 90.0 16 0.00035 34.0 15.3 140 236-407 60-202 (221)
305 COG0790 FOG: TPR repeat, SEL1 90.0 28 0.00061 36.7 21.1 79 899-986 172-269 (292)
306 PF04184 ST7: ST7 protein; In 90.0 15 0.00032 40.4 16.2 65 882-947 259-323 (539)
307 COG3947 Response regulator con 89.8 18 0.00039 36.7 15.3 61 884-947 281-341 (361)
308 COG3629 DnrI DNA-binding trans 89.6 3.1 6.7E-05 42.6 10.5 79 744-823 153-236 (280)
309 KOG0551 Hsp90 co-chaperone CNS 89.5 2 4.3E-05 44.1 8.8 97 884-982 83-181 (390)
310 PF04097 Nic96: Nup93/Nic96; 89.2 54 0.0012 38.8 24.1 220 753-981 267-532 (613)
311 PF10345 Cohesin_load: Cohesin 88.7 59 0.0013 38.6 40.1 50 458-507 371-428 (608)
312 KOG1258 mRNA processing protei 88.6 48 0.001 37.5 37.1 98 587-703 296-395 (577)
313 PF04097 Nic96: Nup93/Nic96; 88.4 60 0.0013 38.4 23.0 91 452-547 262-356 (613)
314 KOG1308 Hsp70-interacting prot 88.3 0.23 5E-06 50.9 1.4 87 894-985 126-213 (377)
315 PF06552 TOM20_plant: Plant sp 88.2 1.6 3.6E-05 40.8 6.7 30 899-931 52-81 (186)
316 PF13174 TPR_6: Tetratricopept 88.0 0.75 1.6E-05 29.4 3.3 29 885-913 3-31 (33)
317 COG1747 Uncharacterized N-term 87.9 48 0.001 36.6 23.3 182 636-825 63-250 (711)
318 KOG1585 Protein required for f 87.8 30 0.00066 34.3 18.9 211 675-941 32-249 (308)
319 PF08631 SPO22: Meiosis protei 87.4 40 0.00087 35.2 26.7 18 458-475 256-273 (278)
320 COG3629 DnrI DNA-binding trans 87.4 4.8 0.0001 41.2 10.2 78 883-963 154-236 (280)
321 KOG4642 Chaperone-dependent E3 87.3 1.6 3.4E-05 42.6 6.2 86 890-980 18-104 (284)
322 PF06552 TOM20_plant: Plant sp 87.1 4.5 9.8E-05 38.0 8.8 76 863-950 51-138 (186)
323 PF13181 TPR_8: Tetratricopept 86.6 0.97 2.1E-05 29.2 3.3 25 923-947 5-29 (34)
324 PF10579 Rapsyn_N: Rapsyn N-te 86.5 1.9 4.1E-05 34.0 5.1 52 929-980 16-69 (80)
325 PF11207 DUF2989: Protein of u 86.4 12 0.00025 36.2 11.4 76 897-975 121-199 (203)
326 KOG4570 Uncharacterized conser 86.4 3.4 7.3E-05 42.0 8.1 105 160-265 59-165 (418)
327 KOG0545 Aryl-hydrocarbon recep 86.1 8.4 0.00018 37.9 10.3 103 882-986 178-296 (329)
328 TIGR02561 HrpB1_HrpK type III 86.0 27 0.00059 31.8 13.9 71 826-934 22-93 (153)
329 PF09613 HrpB1_HrpK: Bacterial 85.6 31 0.00066 32.1 14.3 118 815-974 8-129 (160)
330 COG2976 Uncharacterized protei 85.5 35 0.00076 32.7 14.7 95 820-949 95-189 (207)
331 PLN02406 ethanolamine-phosphat 85.5 0.1 2.2E-06 56.3 -3.0 62 18-90 262-325 (418)
332 KOG2396 HAT (Half-A-TPR) repea 85.3 65 0.0014 35.6 33.4 243 660-952 303-562 (568)
333 PF13174 TPR_6: Tetratricopept 85.3 1.1 2.4E-05 28.6 3.1 27 956-982 2-28 (33)
334 PF07035 Mic1: Colon cancer-as 85.1 34 0.00073 32.2 15.3 24 642-665 92-115 (167)
335 KOG2297 Predicted translation 84.9 49 0.0011 33.9 21.3 160 140-325 41-219 (412)
336 KOG4648 Uncharacterized conser 84.9 6 0.00013 40.7 9.1 110 821-973 104-214 (536)
337 PLN02406 ethanolamine-phosphat 84.6 0.14 3E-06 55.3 -2.5 59 18-87 64-122 (418)
338 PF13374 TPR_10: Tetratricopep 84.4 1.3 2.8E-05 30.2 3.3 27 956-982 4-30 (42)
339 PF13181 TPR_8: Tetratricopept 84.2 2 4.3E-05 27.7 3.9 30 955-984 2-31 (34)
340 PRK09687 putative lyase; Provi 82.7 66 0.0014 33.6 26.7 94 301-400 67-169 (280)
341 TIGR03504 FimV_Cterm FimV C-te 82.2 1.8 4E-05 30.0 3.1 25 958-982 3-27 (44)
342 PF00637 Clathrin: Region in C 82.0 0.043 9.4E-07 50.9 -6.7 17 300-316 123-139 (143)
343 KOG0687 26S proteasome regulat 81.7 32 0.0007 35.6 12.7 98 882-981 104-208 (393)
344 COG2909 MalT ATP-dependent tra 81.3 1.3E+02 0.0028 36.1 28.8 233 595-839 422-684 (894)
345 KOG2066 Vacuolar assembly/sort 81.1 1.2E+02 0.0026 35.6 28.2 18 8-25 41-58 (846)
346 KOG0276 Vesicle coat complex C 81.0 19 0.00042 40.3 11.7 175 722-978 599-773 (794)
347 PF09613 HrpB1_HrpK: Bacterial 80.4 26 0.00057 32.5 10.8 77 888-969 16-93 (160)
348 PF07721 TPR_4: Tetratricopept 80.0 2.5 5.5E-05 25.3 2.9 23 956-978 3-25 (26)
349 PF00637 Clathrin: Region in C 80.0 0.26 5.7E-06 45.6 -2.2 82 207-295 14-95 (143)
350 cd02173 ECT CTP:phosphoethanol 79.8 0.21 4.5E-06 46.3 -2.9 61 16-87 11-73 (152)
351 KOG4570 Uncharacterized conser 79.7 13 0.00027 38.1 9.1 47 534-580 116-162 (418)
352 TIGR02508 type_III_yscG type I 78.8 23 0.00049 29.6 8.6 85 251-340 21-105 (115)
353 KOG2471 TPR repeat-containing 78.6 1.1E+02 0.0024 33.7 25.6 113 596-721 248-381 (696)
354 COG3947 Response regulator con 78.6 20 0.00043 36.4 10.0 60 922-983 282-342 (361)
355 TIGR02508 type_III_yscG type I 78.6 23 0.0005 29.6 8.6 53 309-367 46-98 (115)
356 KOG0376 Serine-threonine phosp 78.0 2.9 6.3E-05 45.4 4.5 88 889-981 11-99 (476)
357 PF13374 TPR_10: Tetratricopep 77.4 4.6 0.0001 27.3 4.1 27 921-947 4-30 (42)
358 TIGR02561 HrpB1_HrpK type III 77.2 12 0.00027 33.9 7.5 73 892-969 20-93 (153)
359 PTZ00308 ethanolamine-phosphat 76.2 0.36 7.8E-06 51.6 -2.8 60 17-87 21-80 (353)
360 KOG0991 Replication factor C, 75.4 71 0.0015 31.5 12.4 138 524-674 136-273 (333)
361 KOG2471 TPR repeat-containing 75.2 1E+02 0.0023 33.9 14.7 106 719-826 250-381 (696)
362 PF14853 Fis1_TPR_C: Fis1 C-te 75.1 5.1 0.00011 29.2 3.8 32 922-955 4-35 (53)
363 PF07035 Mic1: Colon cancer-as 74.9 76 0.0016 29.9 15.3 135 468-616 14-148 (167)
364 COG4455 ImpE Protein of avirul 74.8 19 0.00042 34.9 8.4 63 863-927 17-80 (273)
365 KOG0545 Aryl-hydrocarbon recep 74.3 60 0.0013 32.2 11.7 65 884-953 232-296 (329)
366 KOG4642 Chaperone-dependent E3 74.0 36 0.00077 33.7 10.1 94 879-975 40-138 (284)
367 COG2909 MalT ATP-dependent tra 73.9 2.1E+02 0.0045 34.5 29.0 87 755-841 426-524 (894)
368 PRK11619 lytic murein transgly 73.4 2E+02 0.0044 34.2 38.7 50 926-978 414-463 (644)
369 KOG0890 Protein kinase of the 72.5 3.6E+02 0.0078 36.6 36.0 319 645-983 1389-1731(2382)
370 PF10579 Rapsyn_N: Rapsyn N-te 72.3 8.4 0.00018 30.5 4.6 56 888-944 13-68 (80)
371 KOG0686 COP9 signalosome, subu 72.0 99 0.0021 33.3 13.4 94 884-979 152-254 (466)
372 KOG2062 26S proteasome regulat 71.9 2.1E+02 0.0045 33.6 38.6 100 886-990 541-642 (929)
373 PRK09687 putative lyase; Provi 71.9 1.3E+02 0.0029 31.4 29.7 136 673-824 141-277 (280)
374 PF14561 TPR_20: Tetratricopep 71.7 12 0.00026 31.1 5.8 75 903-980 9-85 (90)
375 KOG0687 26S proteasome regulat 71.5 1.4E+02 0.0029 31.3 15.7 112 744-857 104-224 (393)
376 smart00028 TPR Tetratricopepti 71.0 7.1 0.00015 23.8 3.6 22 925-946 7-28 (34)
377 PRK12798 chemotaxis protein; R 70.4 1.7E+02 0.0037 32.0 17.9 216 755-982 92-323 (421)
378 PF09477 Type_III_YscG: Bacter 70.2 50 0.0011 28.1 8.7 86 250-340 21-106 (116)
379 COG5187 RPN7 26S proteasome re 70.1 1.3E+02 0.0029 30.7 15.0 113 743-857 114-235 (412)
380 TIGR03504 FimV_Cterm FimV C-te 70.1 9.7 0.00021 26.5 4.0 26 377-402 4-29 (44)
381 cd00923 Cyt_c_Oxidase_Va Cytoc 69.7 38 0.00082 28.2 7.8 63 352-416 22-85 (103)
382 COG0790 FOG: TPR repeat, SEL1 69.5 1.5E+02 0.0033 31.1 22.7 146 759-949 92-267 (292)
383 PF09986 DUF2225: Uncharacteri 69.4 36 0.00078 33.8 9.6 70 884-953 120-199 (214)
384 PF14561 TPR_20: Tetratricopep 68.8 46 0.00099 27.6 8.6 53 881-934 21-73 (90)
385 PF02284 COX5A: Cytochrome c o 68.5 38 0.00082 28.5 7.7 60 355-416 28-88 (108)
386 PF04781 DUF627: Protein of un 67.6 65 0.0014 27.8 9.2 91 889-981 3-105 (111)
387 KOG4507 Uncharacterized conser 67.1 30 0.00065 38.7 8.9 99 792-927 620-718 (886)
388 PF09670 Cas_Cas02710: CRISPR- 66.6 99 0.0021 34.0 13.2 17 894-910 253-269 (379)
389 COG5187 RPN7 26S proteasome re 66.5 31 0.00067 34.9 8.2 131 850-982 82-220 (412)
390 COG4455 ImpE Protein of avirul 66.1 40 0.00086 32.9 8.5 17 933-949 119-135 (273)
391 cd00923 Cyt_c_Oxidase_Va Cytoc 66.0 39 0.00084 28.2 7.2 51 863-913 23-73 (103)
392 smart00028 TPR Tetratricopepti 65.9 11 0.00024 22.9 3.7 30 884-913 3-32 (34)
393 PF12968 DUF3856: Domain of Un 65.1 95 0.0021 27.1 11.4 100 884-983 9-129 (144)
394 PTZ00308 ethanolamine-phosphat 65.1 0.86 1.9E-05 48.8 -2.9 59 17-86 202-262 (353)
395 PRK15180 Vi polysaccharide bio 64.0 2.3E+02 0.005 31.2 28.4 92 456-549 331-422 (831)
396 PF10345 Cohesin_load: Cohesin 63.8 3.1E+02 0.0067 32.6 47.3 201 299-545 27-252 (608)
397 PF14853 Fis1_TPR_C: Fis1 C-te 63.8 27 0.00059 25.5 5.5 30 885-914 4-33 (53)
398 KOG1464 COP9 signalosome, subu 63.6 1.7E+02 0.0037 29.5 17.9 90 642-732 148-254 (440)
399 PF02284 COX5A: Cytochrome c o 63.4 62 0.0013 27.3 8.0 51 863-913 26-76 (108)
400 KOG2396 HAT (Half-A-TPR) repea 63.0 2.6E+02 0.0055 31.3 40.2 90 886-980 464-556 (568)
401 PF07721 TPR_4: Tetratricopept 62.5 11 0.00025 22.5 2.9 23 374-396 3-25 (26)
402 PRK10941 hypothetical protein; 62.3 71 0.0015 33.0 10.4 64 885-953 184-247 (269)
403 COG4976 Predicted methyltransf 61.9 15 0.00032 35.9 4.9 58 891-953 4-61 (287)
404 KOG4507 Uncharacterized conser 61.3 29 0.00063 38.8 7.5 76 885-965 645-721 (886)
405 PF04910 Tcf25: Transcriptiona 60.1 2.6E+02 0.0057 30.5 18.7 154 813-980 39-219 (360)
406 KOG1308 Hsp70-interacting prot 60.1 6 0.00013 41.0 2.1 71 884-957 150-220 (377)
407 PF00244 14-3-3: 14-3-3 protei 60.0 95 0.0021 31.4 10.8 50 898-947 142-197 (236)
408 KOG0276 Vesicle coat complex C 57.7 82 0.0018 35.7 10.2 99 176-295 648-746 (794)
409 PF07575 Nucleopor_Nup85: Nup8 56.5 2.6E+02 0.0057 32.8 15.3 62 482-545 404-465 (566)
410 PHA02875 ankyrin repeat protei 56.5 2.3E+02 0.0051 31.6 14.6 13 657-669 298-310 (413)
411 PF13929 mRNA_stabil: mRNA sta 55.9 2.5E+02 0.0055 29.1 16.6 62 444-505 198-260 (292)
412 PF09477 Type_III_YscG: Bacter 54.7 1.4E+02 0.003 25.6 9.0 79 498-583 21-99 (116)
413 PF12862 Apc5: Anaphase-promot 54.5 43 0.00094 28.0 6.2 56 892-947 8-69 (94)
414 PF11207 DUF2989: Protein of u 54.3 2.2E+02 0.0047 27.8 19.4 91 844-939 107-198 (203)
415 PF07575 Nucleopor_Nup85: Nup8 53.5 4.3E+02 0.0094 31.0 20.7 75 538-614 390-464 (566)
416 KOG2034 Vacuolar sorting prote 53.4 4.8E+02 0.011 31.5 27.3 23 677-699 533-555 (911)
417 KOG2297 Predicted translation 51.1 3E+02 0.0066 28.5 19.1 17 711-727 323-339 (412)
418 KOG1464 COP9 signalosome, subu 50.8 2.8E+02 0.0061 28.1 22.0 208 632-839 19-256 (440)
419 PF07163 Pex26: Pex26 protein; 50.6 1.6E+02 0.0035 30.1 10.1 87 716-802 90-181 (309)
420 KOG3364 Membrane protein invol 50.2 1.9E+02 0.0042 26.0 10.1 70 880-953 30-103 (149)
421 PHA02875 ankyrin repeat protei 48.1 4.3E+02 0.0092 29.5 15.0 48 490-541 39-88 (413)
422 PF04190 DUF410: Protein of un 47.7 3.3E+02 0.0073 28.0 19.5 81 813-911 89-170 (260)
423 PF07163 Pex26: Pex26 protein; 47.3 2.2E+02 0.0047 29.3 10.4 87 525-611 90-181 (309)
424 PF08424 NRDE-2: NRDE-2, neces 47.2 3.9E+02 0.0084 28.6 18.2 117 726-844 48-184 (321)
425 KOG0686 COP9 signalosome, subu 47.1 4.1E+02 0.009 28.9 15.5 63 675-737 151-215 (466)
426 PF14689 SPOB_a: Sensor_kinase 47.0 35 0.00075 25.9 4.0 30 953-982 22-51 (62)
427 KOG2422 Uncharacterized conser 46.3 3.2E+02 0.0068 31.2 12.3 125 213-339 304-454 (665)
428 COG5159 RPN6 26S proteasome re 46.3 3.5E+02 0.0075 27.8 22.1 51 644-694 8-65 (421)
429 PF14689 SPOB_a: Sensor_kinase 45.8 43 0.00094 25.4 4.3 46 795-842 6-51 (62)
430 PF11846 DUF3366: Domain of un 45.4 31 0.00067 33.7 4.6 51 143-193 122-172 (193)
431 PRK10941 hypothetical protein; 44.1 93 0.002 32.2 7.8 59 922-982 184-243 (269)
432 KOG2803 Choline phosphate cyti 42.9 4.5 9.7E-05 41.0 -1.7 62 18-90 209-272 (358)
433 PF04190 DUF410: Protein of un 42.9 4E+02 0.0086 27.5 17.9 103 282-396 2-114 (260)
434 PF02184 HAT: HAT (Half-A-TPR) 42.0 53 0.0012 21.0 3.4 27 934-962 2-28 (32)
435 KOG2063 Vacuolar assembly/sort 41.4 7.7E+02 0.017 30.4 18.3 217 676-932 506-745 (877)
436 PRK11619 lytic murein transgly 41.3 6.9E+02 0.015 29.8 44.0 74 275-351 104-177 (644)
437 COG5290 IkappaB kinase complex 41.1 7E+02 0.015 29.8 17.2 20 646-665 670-689 (1243)
438 PF08424 NRDE-2: NRDE-2, neces 41.0 4.8E+02 0.01 27.9 18.2 121 690-812 47-188 (321)
439 KOG0376 Serine-threonine phosp 39.8 64 0.0014 35.6 6.0 70 879-953 34-104 (476)
440 PF11846 DUF3366: Domain of un 39.5 67 0.0015 31.3 5.9 47 900-952 129-175 (193)
441 KOG4077 Cytochrome c oxidase, 38.1 1.8E+02 0.0038 25.8 7.1 46 763-808 68-113 (149)
442 PF08311 Mad3_BUB1_I: Mad3/BUB 37.9 2.5E+02 0.0054 25.1 8.7 43 937-979 81-124 (126)
443 PF10366 Vps39_1: Vacuolar sor 37.6 2.1E+02 0.0045 24.8 7.8 26 203-228 42-67 (108)
444 COG4976 Predicted methyltransf 37.5 55 0.0012 32.2 4.5 57 928-986 4-61 (287)
445 KOG2062 26S proteasome regulat 37.5 7.7E+02 0.017 29.3 44.5 32 446-477 208-239 (929)
446 PF10366 Vps39_1: Vacuolar sor 36.7 71 0.0015 27.6 4.8 27 921-947 41-67 (108)
447 PF12862 Apc5: Anaphase-promot 36.6 1E+02 0.0022 25.7 5.7 54 930-983 9-70 (94)
448 KOG3824 Huntingtin interacting 36.4 87 0.0019 32.2 5.9 63 891-958 125-188 (472)
449 PF11848 DUF3368: Domain of un 36.4 1.4E+02 0.003 21.2 5.5 29 349-377 14-42 (48)
450 cd00280 TRFH Telomeric Repeat 36.1 4E+02 0.0087 25.6 9.8 37 378-417 117-153 (200)
451 PF10255 Paf67: RNA polymerase 35.9 62 0.0014 35.4 5.3 61 887-947 127-192 (404)
452 TIGR01518 g3p_cytidyltrns glyc 35.8 4.9 0.00011 36.0 -2.6 58 17-85 8-65 (125)
453 smart00386 HAT HAT (Half-A-TPR 35.3 64 0.0014 19.8 3.5 14 934-947 2-15 (33)
454 PF10255 Paf67: RNA polymerase 35.2 1.8E+02 0.0038 32.1 8.5 71 814-910 122-192 (404)
455 PF11817 Foie-gras_1: Foie gra 35.2 2.4E+02 0.0052 28.8 9.4 64 918-981 177-245 (247)
456 PF11768 DUF3312: Protein of u 35.2 3.9E+02 0.0085 30.5 11.2 62 784-845 413-475 (545)
457 PF15297 CKAP2_C: Cytoskeleton 35.2 1.3E+02 0.0028 31.9 7.1 68 898-965 119-186 (353)
458 cd08819 CARD_MDA5_2 Caspase ac 34.8 2.3E+02 0.005 23.3 6.9 35 566-605 49-83 (88)
459 PF07720 TPR_3: Tetratricopept 34.2 99 0.0021 20.4 4.1 20 957-976 4-23 (36)
460 cd08819 CARD_MDA5_2 Caspase ac 34.1 2.7E+02 0.0058 23.0 7.4 38 530-572 48-85 (88)
461 PF00244 14-3-3: 14-3-3 protei 33.0 5.3E+02 0.012 26.1 15.0 33 878-910 160-197 (236)
462 KOG2659 LisH motif-containing 32.8 4E+02 0.0087 26.5 9.6 56 924-979 69-128 (228)
463 TIGR00125 cyt_tran_rel cytidyl 32.7 6.8 0.00015 30.1 -1.9 30 16-47 8-37 (66)
464 COG2178 Predicted RNA-binding 32.6 4.7E+02 0.01 25.3 10.1 18 459-476 132-149 (204)
465 PRK13342 recombination factor 32.5 7.5E+02 0.016 27.6 18.6 29 688-716 244-272 (413)
466 KOG2659 LisH motif-containing 32.3 3.7E+02 0.0081 26.7 9.3 98 742-841 24-130 (228)
467 KOG2581 26S proteasome regulat 31.8 7.1E+02 0.015 27.2 12.6 146 778-957 125-283 (493)
468 COG5159 RPN6 26S proteasome re 31.6 6E+02 0.013 26.2 21.5 33 379-411 10-42 (421)
469 cd02172 RfaE_N N-terminal doma 31.5 7.3 0.00016 35.9 -2.2 58 17-85 14-71 (144)
470 KOG1497 COP9 signalosome, subu 30.5 4.8E+02 0.011 27.4 10.0 109 818-954 107-219 (399)
471 KOG2300 Uncharacterized conser 29.5 8.5E+02 0.018 27.4 34.9 396 568-978 24-509 (629)
472 PRK12798 chemotaxis protein; R 29.4 8E+02 0.017 27.1 23.8 192 757-953 125-329 (421)
473 cd02680 MIT_calpain7_2 MIT: do 29.4 95 0.002 24.7 3.9 16 932-947 19-34 (75)
474 PF09670 Cas_Cas02710: CRISPR- 29.3 8E+02 0.017 27.0 13.0 57 207-264 138-198 (379)
475 KOG1463 26S proteasome regulat 29.2 7.3E+02 0.016 26.5 22.3 174 784-964 133-328 (411)
476 PF11848 DUF3368: Domain of un 29.0 1.9E+02 0.0041 20.6 5.1 32 212-243 14-45 (48)
477 PF08311 Mad3_BUB1_I: Mad3/BUB 28.9 4.2E+02 0.0091 23.6 9.4 43 797-839 81-124 (126)
478 TIGR02710 CRISPR-associated pr 28.9 8E+02 0.017 26.9 13.4 17 894-910 258-274 (380)
479 cd02170 cytidylyltransferase c 28.8 7.3 0.00016 35.5 -2.7 57 17-84 11-67 (136)
480 KOG0292 Vesicle coat complex C 27.9 4.4E+02 0.0095 31.8 10.3 45 790-840 654-698 (1202)
481 PRK13342 recombination factor 27.8 8.9E+02 0.019 27.0 20.1 30 460-489 242-271 (413)
482 KOG4279 Serine/threonine prote 27.5 8.1E+02 0.018 29.1 12.0 196 691-952 180-397 (1226)
483 KOG4521 Nuclear pore complex, 27.2 8.3E+02 0.018 30.8 12.5 117 273-395 986-1125(1480)
484 KOG0551 Hsp90 co-chaperone CNS 27.1 7.8E+02 0.017 26.2 12.0 60 884-946 121-180 (390)
485 PF04910 Tcf25: Transcriptiona 26.8 8.6E+02 0.019 26.5 20.6 57 681-737 110-167 (360)
486 cd00280 TRFH Telomeric Repeat 26.1 4E+02 0.0087 25.5 7.9 23 524-546 117-139 (200)
487 KOG2063 Vacuolar assembly/sort 25.9 1.3E+03 0.029 28.5 19.4 176 641-842 506-712 (877)
488 COG0735 Fur Fe2+/Zn2+ uptake r 25.7 2.8E+02 0.0061 25.5 7.1 60 224-284 10-69 (145)
489 PF13929 mRNA_stabil: mRNA sta 25.7 7.8E+02 0.017 25.7 24.0 64 514-577 198-262 (292)
490 KOG2908 26S proteasome regulat 25.6 8.4E+02 0.018 26.0 16.2 74 120-193 62-143 (380)
491 KOG4814 Uncharacterized conser 25.5 3.7E+02 0.0081 31.1 8.9 89 892-982 364-456 (872)
492 PF11663 Toxin_YhaV: Toxin wit 25.4 57 0.0012 29.1 2.3 32 755-788 106-137 (140)
493 PF09797 NatB_MDM20: N-acetylt 25.0 9.2E+02 0.02 26.3 16.6 46 711-756 3-55 (365)
494 PF11663 Toxin_YhaV: Toxin wit 24.9 77 0.0017 28.3 3.0 29 214-244 109-137 (140)
495 COG4259 Uncharacterized protei 24.8 4.3E+02 0.0092 22.3 7.3 29 886-914 76-104 (121)
496 PF10516 SHNi-TPR: SHNi-TPR; 24.7 1.4E+02 0.0029 20.1 3.5 27 956-982 3-29 (38)
497 PRK00777 phosphopantetheine ad 24.5 13 0.00029 34.5 -1.8 52 17-79 11-62 (153)
498 PF13934 ELYS: Nuclear pore co 24.5 7.3E+02 0.016 24.9 13.9 79 280-363 88-166 (226)
499 PF04034 DUF367: Domain of unk 24.4 4.7E+02 0.01 23.3 7.6 62 267-328 63-125 (127)
500 PRK10564 maltose regulon perip 23.8 1.3E+02 0.0029 31.2 4.9 37 782-818 260-296 (303)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.7e-84 Score=787.26 Aligned_cols=674 Identities=20% Similarity=0.275 Sum_probs=648.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHH
Q 001911 201 KLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSL 280 (997)
Q Consensus 201 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 280 (997)
..++.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.++.|..++..+.+.|..++..+++.++.+|
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHH
Q 001911 281 CKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVL 360 (997)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (997)
++.|+++.|.++|+++. .||+++||+||.+|++.|++++|+++|++|...|+.||.+||+.++.+|+..+++..+.+++
T Consensus 132 ~~~g~~~~A~~~f~~m~-~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 132 VRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred HhCCChHHHHHHHhcCC-CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 99999999999999987 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHH
Q 001911 361 SMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEML 440 (997)
Q Consensus 361 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~ 440 (997)
..|.+.|+.|++.+|++||.+|++.|++++|.++|++|.. ||.++||++|.+|++.|+ .++|.++|.+|.
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~------~~eAl~lf~~M~ 280 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGE------CLEGLELFFTMR 280 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCC------HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999975 899999999999999887 899999999999
Q ss_pred HcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001911 441 NAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYT 520 (997)
Q Consensus 441 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 520 (997)
..|+.||..|++.++.++++.|+++.|.+++..|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s 356 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS 356 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 468999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 521 YTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCK 600 (997)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 600 (997)
|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|++|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 001911 601 AGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDAL 680 (997)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 680 (997)
.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|.++|++|.. ++.||..+|+.+
T Consensus 437 ~g~~~~A~~vf~~m~--------------------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 437 CKCIDKALEVFHNIP--------------------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred cCCHHHHHHHHHhCC--------------------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 999999999999984 67889999999999999999999999999986 589999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001911 681 IDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT 760 (997)
Q Consensus 681 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 760 (997)
+.+|++.|+.+.+.+++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .+|..+||.||.+|++.|+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999987 58999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 761 EEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS-SKGCAPNFVTYRVLINHCCASGLLDEAHNLLEE 839 (997)
Q Consensus 761 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (997)
++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|.+++++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 689999999999999999999999999999999
Q ss_pred HHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcch
Q 001911 840 MKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASR 919 (997)
Q Consensus 840 m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 919 (997)
|. ..|+..+|..|+.+|..+|+.+.|..+.+++.+..|+ +.
T Consensus 651 m~------------------------------------~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~---~~ 691 (857)
T PLN03077 651 MP------------------------------------ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN---SV 691 (857)
T ss_pred CC------------------------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---Cc
Confidence 84 2588899999999999999999999999999988876 78
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 920 NSTLLLIESLSLARKIDKAFELYVDMIRKDGSPEL 954 (997)
Q Consensus 920 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 954 (997)
..|..|++.|...|+|++|.++.+.|.++|+.+++
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 88999999999999999999999999999988874
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-80 Score=755.18 Aligned_cols=672 Identities=17% Similarity=0.234 Sum_probs=642.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh---CCCCCCHHHHHHH
Q 001911 232 KPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK---EEFVPDTVLYTKM 308 (997)
Q Consensus 232 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~l 308 (997)
.|+..++|.++.++++.|++++|..+|++|.+.|+.|+..+|..++..+.+.+.++.|.+++.. .+..++...+|.|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 6778899999999999999999999999999999999999999999999999999999998875 5667899999999
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 001911 309 ISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDY 388 (997)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 388 (997)
|.+|++.|+++.|.++|++|. .||.++|+++|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999997 4799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHH
Q 001911 389 SYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAY 468 (997)
Q Consensus 389 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (997)
..+.+++..|.+.|+.||..+||+||.+|++.|+ ++.|.++|++|. .+|..+|+.++.+|++.|++++|+
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~------~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGD------VVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC------HHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999999999999999887 899999999996 467889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 001911 469 NVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEG 548 (997)
Q Consensus 469 ~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 548 (997)
++|++|...|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-- 351 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-- 351 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHH
Q 001911 549 CDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFR 628 (997)
Q Consensus 549 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 628 (997)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.+
T Consensus 352 --~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g---------- 419 (857)
T PLN03077 352 --KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG---------- 419 (857)
T ss_pred --CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC----------
Confidence 69999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred HhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 629 VLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPN 708 (997)
Q Consensus 629 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 708 (997)
..|+..+|++|+++|++.|++++|.++|++|. .+|.++|+++|.+|++.|+.++|+.+|++|.. ++.||
T Consensus 420 ------~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 420 ------LISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred ------CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 78999999999999999999999999999997 57889999999999999999999999999986 58999
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001911 709 VYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG 788 (997)
Q Consensus 709 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 788 (997)
..||+.++.+|++.|.++.+.+++..+.+.|+.+|..++|+|+++|++.|++++|.++|+++ .||..+||++|.+
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~ 563 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG 563 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 5799999999999
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+.+
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~------------------------ 619 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY------------------------ 619 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh------------------------
Confidence 99999999999999999999999999999999999999999999999999998543
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 869 LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
+..|+..+|+.++++|++.|++++|.+++++|.- .|+..+|..|+.+|...|+.+.|....+++.+
T Consensus 620 --------gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~-----~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~- 685 (857)
T PLN03077 620 --------SITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI-----TPDPAVWGALLNACRIHRHVELGELAAQHIFE- 685 (857)
T ss_pred --------CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-
Confidence 5689999999999999999999999999999952 35899999999999999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 949 DGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 949 ~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+.|+ ...|..|+++|...|+|++|.++.+.|.+.|+.
T Consensus 686 -l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 686 -LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred -hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 7786 778999999999999999999999999888765
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-67 Score=626.56 Aligned_cols=548 Identities=20% Similarity=0.272 Sum_probs=478.0
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 231 YKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGF-SMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMI 309 (997)
Q Consensus 231 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li 309 (997)
..++...|..++..+++.|++++|.++|++|.+.|+ .++..+++.++..|++.|.+++|.++|+.+. .||..+||.+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-~pd~~Tyn~LL 444 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-NPTLSTFNMLM 444 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 456778899999999999999999999999999986 4677788889999999999999999999876 49999999999
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 001911 310 SGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYS 389 (997)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 389 (997)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHH
Q 001911 390 YAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYN 469 (997)
Q Consensus 390 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (997)
+|.++|++|.+.|+.||.++||.||.+|| +.|++++|.+
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~-----------------------------------------k~G~~deA~~ 563 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACG-----------------------------------------QSGAVDRAFD 563 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----------------------------------------HCCCHHHHHH
Confidence 99999999999999999999999998875 6688889999
Q ss_pred HHHHHHH--CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 001911 470 VIREMMS--KGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKE 547 (997)
Q Consensus 470 ll~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 547 (997)
+|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 564 lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 9999876 57889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHH
Q 001911 548 GCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYF 627 (997)
Q Consensus 548 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 627 (997)
|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g--------- 714 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK--------- 714 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred HHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 628 RVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNP 707 (997)
Q Consensus 628 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 707 (997)
..||..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|.+|.+.|+.|
T Consensus 715 -------~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 715 -------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred -------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001911 708 NVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMID 787 (997)
Q Consensus 708 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 787 (997)
|..+|++++..|. +++++|..+.+.+..- +. .......+..++|..+|++|.+.|+.||..||+.++.
T Consensus 788 d~~tynsLIglc~--~~y~ka~~l~~~v~~f---------~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~ 855 (1060)
T PLN03218 788 NLVMCRCITGLCL--RRFEKACALGEPVVSF---------DS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLG 855 (1060)
T ss_pred CHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------hc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 9999999886554 2455555554443321 10 0111122344678888899988888889888988888
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 001911 788 GFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVA 850 (997)
Q Consensus 788 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 850 (997)
++++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++|...+..|+..
T Consensus 856 cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 856 CLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8888888888888888888777788888888888887432 367888999988887777654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-66 Score=614.99 Aligned_cols=544 Identities=21% Similarity=0.304 Sum_probs=459.0
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHH
Q 001911 267 SMDGFTLGCFAYSLCKAGRWKEALELIEKE---E-FVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRI 342 (997)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 342 (997)
.++...|..+++.+++.|++++|+++|+++ + ..++..+++.++.+|++.|.+++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 345556666666666666666666666652 2 234555666666666666666666666666653 66666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCC
Q 001911 343 LLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNED 422 (997)
Q Consensus 343 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 422 (997)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy----- 517 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC----- 517 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666664
Q ss_pred CCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 001911 423 LPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKA 502 (997)
Q Consensus 423 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 502 (997)
++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|
T Consensus 518 ------------------------------------~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 518 ------------------------------------ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred ------------------------------------HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 57899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001911 503 FLLFQEMKR--NGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETML 580 (997)
Q Consensus 503 ~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 580 (997)
.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999986 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHH
Q 001911 581 SKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHD 660 (997)
Q Consensus 581 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 660 (997)
+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.+ ..|+..+|+.+|.+|++.|++++|.+
T Consensus 642 ~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G----------------~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG----------------IKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----------------CCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999998765 78999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 001911 661 LLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSY 740 (997)
Q Consensus 661 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 740 (997)
+|++|...|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+
T Consensus 706 lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001911 741 APNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVL 820 (997)
Q Consensus 741 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 820 (997)
.||..+|+.++..|. +++++|.++.+.+... +. .......+..++|+.+|++|.+.|+.||..||+.+
T Consensus 786 ~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f---------~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 786 KPNLVMCRCITGLCL--RRFEKACALGEPVVSF---------DS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred CCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------hc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 999999999986544 3566666655444321 10 11112233456799999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP 883 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 883 (997)
+.++++.+..+.+..+++.|.....+++..+|.++++++.+...+|..++++|...|+.|+..
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999999999888899999999999999766678999999999999999875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-61 Score=575.33 Aligned_cols=471 Identities=23% Similarity=0.315 Sum_probs=435.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHH
Q 001911 202 LLNVLIHKCCRNGFWNVALEELGRLKDFG-YKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSL 280 (997)
Q Consensus 202 ~~~~li~~y~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 280 (997)
.|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|..++..|.+.|+.||..+++.++++|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 59999999999999999999999998764 78999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHH
Q 001911 281 CKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVL 360 (997)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (997)
++.|++++|.++|+++. .||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++
T Consensus 169 ~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred hcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999986 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHH
Q 001911 361 SMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEML 440 (997)
Q Consensus 361 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~ 440 (997)
..+.+.|+.||..+|++||++|+++|++++|.++|++|.. +|.++||+||.+|+
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~---------------------- 301 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYA---------------------- 301 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999999974 89999999998875
Q ss_pred HcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001911 441 NAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYT 520 (997)
Q Consensus 441 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 520 (997)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+
T Consensus 302 -------------------~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 302 -------------------LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred -------------------hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 521 YTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCK 600 (997)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 600 (997)
|+.|+++|++.|++++|.++|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999974 69999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 001911 601 AGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDAL 680 (997)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 680 (997)
.|.+++|.++|+.|.+.. ++.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|
T Consensus 439 ~g~~~~a~~~f~~m~~~~---------------g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~L 500 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENH---------------RIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAAL 500 (697)
T ss_pred CCcHHHHHHHHHHHHHhc---------------CCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHH
Confidence 999999999999997642 36889999999999999999999999888776 457888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001911 681 IDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYA 741 (997)
Q Consensus 681 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 741 (997)
+.+|...|+++.|..+++++.+.++. +..+|..+++.|++.|++++|.++++.|.+.|+.
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 88888888888888888888765432 4567777777777777777777777777777664
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-61 Score=575.66 Aligned_cols=587 Identities=21% Similarity=0.295 Sum_probs=499.9
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 299 VPDTVLYTKMISGLCEASLFEEAMDLLNRMRARS-CIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHS 377 (997)
Q Consensus 299 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 377 (997)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.+++..|.+.|+.||+.+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 5677899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHH
Q 001911 378 LIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQC 457 (997)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 457 (997)
|+.+|++.|++++|.++|++|.+ ||.++||++|.+|+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~--------------------------------------- 200 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLV--------------------------------------- 200 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHH---------------------------------------
Confidence 99999999999999999999975 89999999998865
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQA 537 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 537 (997)
+.|++++|+++|++|.+.|..|+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|
T Consensus 201 --~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 201 --DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred --HCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001911 538 RNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGN 617 (997)
Q Consensus 538 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 617 (997)
.++|++|.+ +|.++||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.
T Consensus 279 ~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 279 RCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999999964 5899999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 618 AEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVF 697 (997)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 697 (997)
+ ..||..+|++|+++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|
T Consensus 355 g----------------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 355 G----------------FPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred C----------------CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence 5 78999999999999999999999999999996 578999999999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 001911 698 SKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLE-DSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY 776 (997)
Q Consensus 698 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 776 (997)
++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.
T Consensus 415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~ 491 (697)
T PLN03081 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFK 491 (697)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCC
Confidence 9999999999999999999999999999999999999986 589999999999999999999999999998765 578
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKV 855 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 855 (997)
|+..+|++|+.+|..+|+++.|..+++++.+. .| +..+|..|+++|++.|++++|.+++++|.+.+...... +.++
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g-~s~i 568 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA-CTWI 568 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC-eeEE
Confidence 99999999999999999999999999999754 56 47799999999999999999999999999887543221 1111
Q ss_pred ---------HHh-----HhH-hHHHHHHHHHHhccCCCCCChhhHH-HHHH------HHHhcCCHHHHHHHHHHHhcCCC
Q 001911 856 ---------IEG-----FSR-EFIVSLGLVNEMGKTDSVPIVPAYR-ILID------HYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 856 ---------~~~-----~~~-~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~------~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
+.+ ..+ -+....++..+|...|..|+..... .+-. .+....++.-|..+ ...+|
T Consensus 569 ~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l----~~~~~ 644 (697)
T PLN03081 569 EVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGL----INTSE 644 (697)
T ss_pred EECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhC----ccCCC
Confidence 001 011 1334456777888888888754211 0000 01111111111111 11222
Q ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 001911 914 NSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 914 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~ 970 (997)
+ +-..+...+...++...|.++..++..+.+.- |..-++|.-++-|..|+|
T Consensus 645 ~------~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~ 696 (697)
T PLN03081 645 W------TPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDY 696 (697)
T ss_pred C------CeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCccccccc
Confidence 2 11223445556799999999999988877544 666677777777777764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.6e-43 Score=439.03 Aligned_cols=798 Identities=15% Similarity=0.068 Sum_probs=601.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcC
Q 001911 135 VVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNG 214 (997)
Q Consensus 135 ~~~vl~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 214 (997)
+..++...++++.|...|.-... .....+...+..+..++...|+++.|...++.+...++... .++..++..+...|
T Consensus 96 ~a~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~~ 173 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDELPGKTL-LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL-YAKLGLAQLALAEN 173 (899)
T ss_pred HHHHHHHCCCHHHHHHhhccccc-CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHCC
Confidence 33445556677777665532211 12233455666777777777777777777777765554332 35677777777778
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 215 FWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIE 294 (997)
Q Consensus 215 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (997)
++++|+++++++.+.. +++...+..+...+...|+++.|...|+++.+.+ +.+..++..++..+...|++++|...++
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 251 (899)
T TIGR02917 174 RFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHAD 251 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888777776643 4456667777777777788888888887777654 3456667777777777788888877776
Q ss_pred hC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 001911 295 KE-EFVP-DTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPN-VVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPS 371 (997)
Q Consensus 295 ~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 371 (997)
.. ...| +...+......+...|++++|+..|+++.+.+ |+ ...+..+...+...|++++|...+..+.+.. +.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 328 (899)
T TIGR02917 252 ALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNS 328 (899)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 51 1112 22333334445566777888888887777653 33 2333444555667788888888888877654 345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccch
Q 001911 372 PRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINV 451 (997)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 451 (997)
...+..+...+.+.|++++|...++.+.... ..+...++.+...+...++ ++.|.+.|+++.... +.+...+
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~-~~~~~~~ 400 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD------FEKAAEYLAKATELD-PENAAAR 400 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 6667777788888888888888888877643 2345666666666666555 778888888776653 2234455
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 001911 452 SNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKA 531 (997)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 531 (997)
..+..++...|++++|.+.++.+..... ........++..+.+.|++++|..+++.+.... +.+..++..+...+...
T Consensus 401 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 401 TQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhC
Confidence 6677777788888888888888877541 223345556677788888888888888887653 34677888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001911 532 GLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIY 611 (997)
Q Consensus 532 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 611 (997)
|++++|...|+++.+.... +...+..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|...+
T Consensus 479 ~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888876433 56667777888888888888888888888764 456777888888888888888888888
Q ss_pred HHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 001911 612 ARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLD 691 (997)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 691 (997)
.++.... +.+...+..++..|.+.|++++|.++++.+.... +.+..+|..+...|...|+++
T Consensus 557 ~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 557 EKAAELN-----------------PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHhC-----------------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 8886653 4566678888899999999999999999998755 667788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001911 692 EAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMME 771 (997)
Q Consensus 692 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 771 (997)
+|...|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.
T Consensus 619 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 619 KAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999887543 66778888999999999999999999988764 4567888999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhh
Q 001911 772 EKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAG 851 (997)
Q Consensus 772 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 851 (997)
+.+ +++...+..+...+...|++++|++.|+++... .|+..++..++.++.+.|++++|...++++.... |.+...
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 874 447778888888999999999999999999886 4666778889999999999999999999988764 455555
Q ss_pred HHHHHHhHh--HhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH
Q 001911 852 YRKVIEGFS--REFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESL 929 (997)
Q Consensus 852 ~~~~~~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 929 (997)
+..+...+. .+...|...+.++.... +++...++.++..+...|+ ++|++.++++....|+ ++..+..++.++
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~---~~~~~~~~~~~~ 847 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN---IPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC---CcHHHHHHHHHH
Confidence 555544443 46778888888887654 3456688889999999999 8899999999988765 778888999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 930 SLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 930 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
...|++++|.+.++++++. .| +..++..++.+|++.|++++|.+++++|++
T Consensus 848 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999994 46 688999999999999999999999998863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2e-42 Score=435.24 Aligned_cols=803 Identities=13% Similarity=0.035 Sum_probs=653.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcC
Q 001911 135 VVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNG 214 (997)
Q Consensus 135 ~~~vl~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 214 (997)
+..++...++.+.|...|.-+... + .++......+..++...|+++.|...+..............+..+...|.+.|
T Consensus 62 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (899)
T TIGR02917 62 LGKIYLALGDYAAAEKELRKALSL-G-YPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG 139 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-C-CChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcC
Confidence 555666788889998888876654 2 23455666778888899999999888877654444445567888899999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 215 FWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIE 294 (997)
Q Consensus 215 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (997)
++++|...|+++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 140 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 217 (899)
T TIGR02917 140 QLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYR 217 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999988755 3346678888888999999999999999988764 4567788888889999999999999988
Q ss_pred h-CCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 001911 295 K-EEF-VPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSP 372 (997)
Q Consensus 295 ~-~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 372 (997)
+ ... +.+..++..++..+...|++++|...++.+.+.... +...+......+...|++++|...++.+.+.+. .+.
T Consensus 218 ~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~ 295 (899)
T TIGR02917 218 KAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAP-EYL 295 (899)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-Cch
Confidence 7 222 346778888899999999999999999999876422 233333344455678999999999999887652 234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchh
Q 001911 373 RIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVS 452 (997)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 452 (997)
..+..+...+...|++++|...|+.+.+.. +.+...+..+...+...++ ++.|...+..+.... +.+...+.
T Consensus 296 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~------~~~A~~~~~~~~~~~-~~~~~~~~ 367 (899)
T TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGR------VDEAIATLSPALGLD-PDDPAALS 367 (899)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCC------HHHHHHHHHHHHhcC-CCCHHHHH
Confidence 445566777889999999999999988753 2344555666666666665 788999998887654 33456677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 001911 453 NFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAG 532 (997)
Q Consensus 453 ~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 532 (997)
.+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.... .......++..+.+.|
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 445 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSG 445 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcC
Confidence 78888999999999999999998763 335566777888888999999999999998876533 3456667888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001911 533 LIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYA 612 (997)
Q Consensus 533 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 612 (997)
++++|..+++.+.... +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++
T Consensus 446 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998764 3477889999999999999999999999998764 4566778888899999999999999999
Q ss_pred HHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001911 613 RMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDE 692 (997)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 692 (997)
++.... +.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..|...|++++
T Consensus 524 ~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 524 KVLTID-----------------PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHHHhC-----------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHH
Confidence 998753 5567788899999999999999999999998776 5677788899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001911 693 AQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEE 772 (997)
Q Consensus 693 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 772 (997)
|..+++.+.+..+ .+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.+
T Consensus 586 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999988754 477889999999999999999999999998764 45677888999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhH
Q 001911 773 KGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGY 852 (997)
Q Consensus 773 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 852 (997)
.. +.+..++..++..+...|++++|.++++.+.+.+ .++...+..+...+...|++++|...++++....... ..+
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~ 739 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNA 739 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHH
Confidence 63 3368899999999999999999999999999874 4477888999999999999999999999998765333 333
Q ss_pred HHHHHhHh--HhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH
Q 001911 853 RKVIEGFS--REFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLS 930 (997)
Q Consensus 853 ~~~~~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 930 (997)
..+...+. .+..+|...+.++.... +.+...+..++..|...|++++|++.|+++.+..|. +..++..+++.+.
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 815 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD---NAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Confidence 33433333 36778888888877554 345668889999999999999999999999988765 8889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 931 LARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 931 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
..|+ ++|+..++++.+ ..|+ +..+..++.+|...|++++|.++++++.+.+..
T Consensus 816 ~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 816 ELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred hcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999 889999999999 5675 778889999999999999999999999987654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.3e-27 Score=293.59 Aligned_cols=672 Identities=14% Similarity=0.063 Sum_probs=456.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHh
Q 001911 203 LNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCK 282 (997)
Q Consensus 203 ~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 282 (997)
+-..++.+-..++.+.|.+.++++.... +.+..++..++..+.+.|+.++|...++...+.. |+...+..
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~------- 100 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRS------- 100 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHH-------
Confidence 3444555666788888888888877643 2346667777777788888888888888887764 22211110
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcCChhHHHHHHH
Q 001911 283 AGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVV-TFRILLCGCLRKRQLGRCKRVLS 361 (997)
Q Consensus 283 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~ 361 (997)
+...+.. ..|+......+...+.+.|++++|++.|+++.... +|+.. ............|+.++|...++
T Consensus 101 ------~~~~~~~--~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~ 171 (1157)
T PRK11447 101 ------SRTTMLL--STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQ 171 (1157)
T ss_pred ------HHHHHHh--cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHH
Confidence 0001110 13455455666667778888888888888877653 33321 11111112224578888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHH
Q 001911 362 MMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLN 441 (997)
Q Consensus 362 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~ 441 (997)
.+.+.. +.++..+..+...+...|+.++|++.++++.... +.... .+...+..+..
T Consensus 172 ~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~--~~~~~---------------------aa~~~~~~l~~ 227 (1157)
T PRK11447 172 RLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP--AGRDA---------------------AAQLWYGQIKD 227 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--CchHH---------------------HHHHHHHHHhc
Confidence 888764 4456777788888888888888888888886531 11100 00000011111
Q ss_pred cCcccc-ccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001911 442 AGVVLN-KINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYT 520 (997)
Q Consensus 442 ~g~~~~-~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 520 (997)
.+..+. ...+..++..+-.....+.|...+..+......|+... ......+...|++++|+..|++..+.... +..+
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a 305 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEA 305 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 111110 01111122222233345667777766654422333222 22345566788899999999888876432 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHH------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 001911 521 YTILIDNFCKAGLIEQARNWFDEMVKEGCDPN-VVTYT------------ALIHAYLKARKPSQANELFETMLSKGCIPN 587 (997)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~------------~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~ 587 (997)
+..+...+.+.|++++|+..|++..+...... ...|. .....+.+.|++++|+..|+++++.. +.+
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTD 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 88888888899999999999988887643221 11121 22345678899999999999988774 445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001911 588 IVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSV 667 (997)
Q Consensus 588 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 667 (997)
...+..+...+...|++++|++.|+++.... +.+...+..+...|. .++.++|..+++.+..
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----------------p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD-----------------PGNTNAVRGLANLYR-QQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCH
Confidence 6677788888999999999999999887653 344555666666664 4578888888876543
Q ss_pred cCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001911 668 VGC--------EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDS 739 (997)
Q Consensus 668 ~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 739 (997)
... ......+..+...+...|++++|+..|++.++..+. +...+..+...|.+.|++++|...++++.+..
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 447 SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 210 011223556677788899999999999999988654 56677888889999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 001911 740 YAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVV---------TYTAMIDGFGKVGKVDKCLELLRQMSSKGC 810 (997)
Q Consensus 740 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 810 (997)
+.+...+..+...+.+.|+.++|...++.+......++.. .+..+...+...|+.++|+++++. .
T Consensus 526 -P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~ 599 (1157)
T PRK11447 526 -PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----Q 599 (1157)
T ss_pred -CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----C
Confidence 3345555555566778899999999988765432222221 223456778899999999998872 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHH
Q 001911 811 APNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILID 890 (997)
Q Consensus 811 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 890 (997)
+++...+..+...+.+.|++++|+..+++..+.. +.+...+..++.
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~----------------------------------P~~~~a~~~la~ 645 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE----------------------------------PGNADARLGLIE 645 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHH
Confidence 3466778889999999999999999999987643 233567888999
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHH
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDG--SP---ELSTFVHLIKGLI 965 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~y~ 965 (997)
+|...|++++|++.++++.+..|. +...+..++.++...|++++|.+.++++++..- .| +..++.+++.+|.
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATAND---SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999887654 677888899999999999999999999988421 12 1246778899999
Q ss_pred hcCCHHHHHHHHHHhhc
Q 001911 966 RVNKWEEALQLSYSICH 982 (997)
Q Consensus 966 ~~g~~~eA~~~~~~~~~ 982 (997)
..|++++|+..+++.+.
T Consensus 723 ~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 723 QTGQPQQALETYKDAMV 739 (1157)
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 99999999999998863
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.3e-26 Score=290.03 Aligned_cols=659 Identities=14% Similarity=0.099 Sum_probs=428.5
Q ss_pred HHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhH------------
Q 001911 171 LVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIY------------ 238 (997)
Q Consensus 171 l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~------------ 238 (997)
.+++....++.+.|.+.+.++...++.. ..++..++..+.+.|+.++|.+.++++.+.. |+...+
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 3456666788889999998887766654 3568888899999999999999999998755 443222
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCch-hHHHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHH
Q 001911 239 -----NALIQVFLRADRLDTAYLVYREMLDAGFSMDGF-TLGCFAYSLCKAGRWKEALELIEK-EEFVP-DTVLYTKMIS 310 (997)
Q Consensus 239 -----~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~li~ 310 (997)
..+...+.+.|++++|...|+.+.+.+ +++.. ............|+.++|++.+++ ....| +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 112223445555555555555554432 11111 000111111123444444444443 11112 2333444444
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 001911 311 GLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPS-PRIFHSLIHAYCRSGDYS 389 (997)
Q Consensus 311 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~ 389 (997)
.+...|++++|++.|+++.... +.. ...+...+..+...+..+. ...+...+..+-....+.
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~--~~~---------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSP--AGR---------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCC--Cch---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 4444444444444444443321 100 0001111111111111110 111111111111111222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHH
Q 001911 390 YAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYN 469 (997)
Q Consensus 390 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (997)
.|...+.++......|+.. .......+...|++++|+.
T Consensus 253 ~A~~~L~~~~~~~~dp~~~------------------------------------------~~~~G~~~~~~g~~~~A~~ 290 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFR------------------------------------------ARAQGLAAVDSGQGGKAIP 290 (1157)
T ss_pred HHHHHHHHHHHhccCcchH------------------------------------------HHHHHHHHHHCCCHHHHHH
Confidence 3333333322211111110 0122345667899999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHHcCCHHH
Q 001911 470 VIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIP-DVYTY------------TILIDNFCKAGLIEQ 536 (997)
Q Consensus 470 ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~------------~~li~~~~~~g~~~~ 536 (997)
.|++.++.. +.+...+..+...+.+.|++++|+..|++..+..... ....| ......+.+.|++++
T Consensus 291 ~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~e 369 (1157)
T PRK11447 291 ELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQ 369 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHH
Confidence 999998863 3366778888889999999999999999988764322 11111 123456778999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 537 ARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 537 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
|+..|+++.+.... +...+..+...+...|++++|++.|++..+.. +.+...+..+...+. .++.++|...++.+..
T Consensus 370 A~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 370 AERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCH
Confidence 99999999987543 66777888999999999999999999998764 445666767777664 5678999988876543
Q ss_pred ccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001911 617 NAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMV 696 (997)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 696 (997)
.......+ .. ..-....+..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|...
T Consensus 447 ~~~~~~~~-~~-------~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 447 SQRRSIDD-IE-------RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHH-HH-------HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 21000000 00 00112245667788899999999999999999875 45677788899999999999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHHcCCHHHHHHHH
Q 001911 697 FSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVV---------IYTEMIDGLIKVGKTEEAYKVM 767 (997)
Q Consensus 697 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A~~~~ 767 (997)
++++.+..+. +...+..+...+...++.++|+..++.+......++.. .+..+...+...|+.++|.+++
T Consensus 518 l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999987543 44555555566778999999999998875433222221 1234567788999999999998
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 001911 768 LMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWP 846 (997)
Q Consensus 768 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 846 (997)
+. .+++...+..+...+.+.|++++|++.|++.++. .| +...+..++.+|...|++++|+..++...+..
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-- 667 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-- 667 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--
Confidence 72 2446667788899999999999999999999986 46 68899999999999999999999999876532
Q ss_pred CchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc---chhhHH
Q 001911 847 THVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAA---SRNSTL 923 (997)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~ 923 (997)
+.+...+..++.++...|++++|.++++++....|...+ +...+.
T Consensus 668 --------------------------------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~ 715 (1157)
T PRK11447 668 --------------------------------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLR 715 (1157)
T ss_pred --------------------------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHH
Confidence 122345677889999999999999999999876543222 335666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 924 LLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.++..+...|++++|++.|++++.
T Consensus 716 ~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 716 DAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 778899999999999999999974
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=2.2e-24 Score=256.26 Aligned_cols=683 Identities=13% Similarity=0.023 Sum_probs=432.8
Q ss_pred HcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 001911 176 ECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAY 255 (997)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 255 (997)
...|+++.|...|+...+.+|.. ..++..|...|.+.|++++|+..+++..+. .|+...|..++..+ ++.++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 34589999999999998888877 568899999999999999999999999874 45555555544333 8899999
Q ss_pred HHHHHHHHCCCCCCchhHHHHHHH--------HHhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCChHHHHHHHH
Q 001911 256 LVYREMLDAGFSMDGFTLGCFAYS--------LCKAGRWKEALELIEKEEFVPDTVLY-TKMISGLCEASLFEEAMDLLN 326 (997)
Q Consensus 256 ~~~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~ 326 (997)
.+|+++.+.. +.+..++..+... |.+.+...+|++ .......|+.... -.+...|.+.|++++|++++.
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999999875 4455566666665 788877777777 4444444445444 444899999999999999999
Q ss_pred HHHhCCCCCcHHhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-
Q 001911 327 RMRARSCIPNVVTFRILLCGCLR-KRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQ- 404 (997)
Q Consensus 327 ~m~~~~~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 404 (997)
++.+.+. .+..-...+-.++.. .++ +.+..++.. .+..++.....++..|.+.|+.++|.++++++...-..
T Consensus 207 ~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 9999863 334445566667776 466 777777443 33467889999999999999999999999998764333
Q ss_pred CCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCcccc-ccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 001911 405 PGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLN-KINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDT 483 (997)
Q Consensus 405 p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~ 483 (997)
|+..+|.-++.-...... .+..-|.+ ...++ ...+-..+..+.+.+.++-+.++.. +.|..
T Consensus 281 ~~~~~~~~~l~r~~~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 342 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPV--------QALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPAN 342 (987)
T ss_pred CccHHHHHHHHhccCchh--------hhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcc
Confidence 666666555543321100 00000000 00000 0011123455566677775554422 12222
Q ss_pred hhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHH
Q 001911 484 STYSKVIGYLC--DASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKE-G-CDPNVVTYTAL 559 (997)
Q Consensus 484 ~~~~~li~~~~--~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~~~~~~~~~l 559 (997)
.. ..++... ..+...++...++.|.+... .+......+.-...+.|+.++|.++|+..... + -.++....+-+
T Consensus 343 ~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 343 EM--LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred hH--HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 22 1222222 23555566666666655421 24555555555566777777777777776652 1 12233344456
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhccCCCchhHHHHHhccCCCC
Q 001911 560 IHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIER---ACRIYARMKGNAEISDVDIYFRVLDNNCKE 636 (997)
Q Consensus 560 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (997)
+..|.+.+......+...-.. +++...- +.-.|+..+ +...+...... .+
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~-----------------~p 472 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSK----PLPLAEQ------RQWQSQLPGIADNCPAIVRLLGD-----------------MS 472 (987)
T ss_pred HHHHHhCCcccchHHHHHhcc----ccccchh------HHHHhhhhhhhhhHHHHHHhccc-----------------CC
Confidence 666666665333222221111 1111111 111222322 22233333221 13
Q ss_pred C--CceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 001911 637 P--NVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGS 714 (997)
Q Consensus 637 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 714 (997)
+ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... .|+...+..
T Consensus 473 ~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~ 547 (987)
T PRK09782 473 PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLA 547 (987)
T ss_pred CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHH
Confidence 3 45566666666665 67777888777766553 45444334444556778888888888876554 233444556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 001911 715 LIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK 794 (997)
Q Consensus 715 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 794 (997)
+...+.+.|+.++|...+++.++.. +.+...+..+...+...|++++|...+++..+. .|+...|..+...+.+.|+
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCC
Confidence 6667777888888888888877654 223333333333444558888888888887764 4567777777778888888
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 795 VDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 795 ~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
+++|+..+++.+.. .| +...+..+..++...|++++|+..+++..+..
T Consensus 625 ~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~----------------------------- 673 (987)
T PRK09782 625 VPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL----------------------------- 673 (987)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------
Confidence 88888888888775 45 46677777778888888888888887776532
Q ss_pred ccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 874 GKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 874 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
|+ ...+..++.++...|++++|+..++++.+..|+ +..+....++......+++.|.+.+++... +.|
T Consensus 674 ------P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~---~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~ 742 (987)
T PRK09782 674 ------PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN---QALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSF 742 (987)
T ss_pred ------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCc
Confidence 43 446777888888888888888888888877765 556666777777777778888888888777 667
Q ss_pred CHHHHHHHHHHHHhcCCH
Q 001911 953 ELSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 953 ~~~~~~~l~~~y~~~g~~ 970 (997)
+..+....+.++...+++
T Consensus 743 ~~~a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 743 DSSIGLRSGAMSTANNNV 760 (987)
T ss_pred cchhccccchHhhhcccc
Confidence 644556666666655544
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=7.2e-23 Score=243.36 Aligned_cols=637 Identities=11% Similarity=0.015 Sum_probs=382.8
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHH
Q 001911 211 CRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEAL 290 (997)
Q Consensus 211 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 290 (997)
...|++++|+..|++..+.. +-+..++..|..++...|+.++|....++..+.. +.|...+..+ ..+ +++++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHH
Confidence 33488888888888877644 2236667777777778888888877777777653 1222222222 111 4444544
Q ss_pred HHHHh-CCCCC-CHHHHHHHHHH--------HHccCChHHHHHHHHHHHhCCCCCcHHhHHHH-HHHHHhcCChhHHHHH
Q 001911 291 ELIEK-EEFVP-DTVLYTKMISG--------LCEASLFEEAMDLLNRMRARSCIPNVVTFRIL-LCGCLRKRQLGRCKRV 359 (997)
Q Consensus 291 ~~~~~-~~~~p-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~g~~~~a~~~ 359 (997)
.++++ ....| +...+..+... |.+. ++|.+.++ .......|+....... ...|.+.|++++|..+
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 44444 11122 12222222222 3333 22222222 2222112222222222 4444444555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHH
Q 001911 360 LSMMITEGCYPSPRIFHSLIHAYCR-SGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAE 438 (997)
Q Consensus 360 ~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~ 438 (997)
+..+.+.+ +.+......|..+|.. .++ +.|..+++.
T Consensus 205 L~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----------------------------------------- 241 (987)
T PRK09782 205 YNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----------------------------------------- 241 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch-----------------------------------------
Confidence 55554443 2223333344444444 233 333333221
Q ss_pred HHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCC
Q 001911 439 MLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFI-PDTSTYSKVIGYLCDASEAE-KAFLLFQEMKRNGLIP 516 (997)
Q Consensus 439 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~g~~~ 516 (997)
...-+......+...|.+.|+.++|.++++++...-.. |+..++..++ .+.+... .|..-|.+ + ..+
T Consensus 242 ----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~--~--~~~ 310 (987)
T PRK09782 242 ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL---SKYSANPVQALANYTV--Q--FAD 310 (987)
T ss_pred ----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH---HhccCchhhhccchhh--h--hHH
Confidence 11123334445556667778888888888877554222 4444444333 2332221 11111111 0 011
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 517 D-VYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALI 595 (997)
Q Consensus 517 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 595 (997)
+ ....-.++..+.+.++++.+.++.+ +.|.....-.-..+....+...++.+.+..|.+.. +-+....-.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~ 383 (987)
T PRK09782 311 NRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLT 383 (987)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 1 1112233666777777775554422 22333321111112223356666666666666542 33555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhc-----------------------
Q 001911 596 DGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKV----------------------- 652 (997)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------------- 652 (997)
-...+.|+.++|.++|+......... ..+.....-++..|.+.
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDA--------------RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCccc--------------ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 55667777788888877775521100 01111222333333333
Q ss_pred --CChHHHH---HHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 001911 653 --HKVREAH---DLLDAMSVVGCEP--NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRL 725 (997)
Q Consensus 653 --g~~~~A~---~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 725 (997)
|+..++. +.+....... ++ +...|..+..++.. +++++|+..+.+..... |+......+...+...|++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCH
Confidence 2332222 2333333222 34 67778888887776 89999999888888764 5555544555666789999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001911 726 DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 805 (997)
++|...++++... +|+...+..+...+.+.|+.++|...+++..+... ++...+..+...+.+.|++++|+..+++.
T Consensus 526 eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 526 ATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999998664 45555567778888999999999999999988642 23333334444455669999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhh
Q 001911 806 SSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPA 884 (997)
Q Consensus 806 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~ 884 (997)
++. .|+...+..+..++.+.|++++|...+++..... |+ ...
T Consensus 603 L~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-----------------------------------Pd~~~a 645 (987)
T PRK09782 603 LNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-----------------------------------PNNSNY 645 (987)
T ss_pred HHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------------CCCHHH
Confidence 986 5788889999999999999999999999987643 44 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
+..++..+...|++++|++.++++.+..|+ +...+..++.++...|++++|+..++++++ ..|+ ..+....+++
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~---~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPD---DPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQ 720 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHH
Confidence 788999999999999999999999998876 889999999999999999999999999999 7797 6788899999
Q ss_pred HHhcCCHHHHHHHHHHhh
Q 001911 964 LIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~ 981 (997)
..+..+++.|.+-+++.-
T Consensus 721 ~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 721 NQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988877643
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=3.7e-23 Score=215.33 Aligned_cols=457 Identities=15% Similarity=0.127 Sum_probs=374.0
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQA 537 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 537 (997)
..+.|++++|++.....-... +.+......+-..+.+..+.+....--....+.. +.-..+|..+.+.+-..|++++|
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHH
Confidence 346799999999877665542 2222233333345556666666555444444442 22568899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 538 RNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTF-TALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 538 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
+.+++.+++...+ .+..|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+-..|++++|...|.+..+
T Consensus 136 l~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 136 LALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 9999999997544 6788999999999999999999999998876 4655443 4455666678999999999998877
Q ss_pred ccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001911 617 NAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMV 696 (997)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 696 (997)
.. +.-...|+.|...+-..|+...|+..|++....+ +.=...|-.|...|...+.+++|...
T Consensus 213 ~q-----------------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 213 TQ-----------------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hC-----------------CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHH
Confidence 53 4456789999999999999999999999998764 33356788999999999999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 001911 697 FSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY 776 (997)
Q Consensus 697 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 776 (997)
+.+.....+. ....+..+...|..+|.++.|+..|++.++.. +.-...|+.|..++-..|++.+|...+++......
T Consensus 275 Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p- 351 (966)
T KOG4626|consen 275 YLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP- 351 (966)
T ss_pred HHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-
Confidence 9999887543 55677778888999999999999999999864 23367999999999999999999999999998632
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKV 855 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 855 (997)
-.....+.|...|...|.+++|..+|....+- .|. ...++.|...|-.+|++++|+..+++....
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI------------ 417 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI------------ 417 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc------------
Confidence 25678889999999999999999999999984 675 678999999999999999999999998763
Q ss_pred HHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 856 IEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 856 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
.|+ ..+|+.+++.|-..|+.+.|++.|.+++..+|. -..++..|+.+|...|+
T Consensus 418 -----------------------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt---~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 418 -----------------------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT---FAEAHSNLASIYKDSGN 471 (966)
T ss_pred -----------------------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH---HHHHHhhHHHHhhccCC
Confidence 466 448999999999999999999999999998775 67889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 935 IDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 935 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..+|+.-|+.+++ +.|| +.++..|+.++.-..+|.+-.+-++++.+
T Consensus 472 i~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~s 518 (966)
T KOG4626|consen 472 IPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVS 518 (966)
T ss_pred cHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccchHHHHHHHHH
Confidence 9999999999999 8999 78898888888777777775555554443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.1e-20 Score=204.86 Aligned_cols=564 Identities=13% Similarity=0.097 Sum_probs=397.8
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001911 318 FEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITE--GCYPSPRIFHSLIHAYCRSGDYSYAYKLL 395 (997)
Q Consensus 318 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 395 (997)
++.|...|....... ++|.-.+-.-.......|++-.|..+|...... .+.||+.+ .+.+.+.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 588888898888764 445444333334445788999999999997654 45556543 3446677999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHH
Q 001911 396 SKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMM 475 (997)
Q Consensus 396 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~ 475 (997)
.+..+. .|+.+.-...+.-+- ........+..+..++...-
T Consensus 223 ~ralqL--dp~~v~alv~L~~~~-------------------------------------l~~~d~~s~~~~~~ll~~ay 263 (1018)
T KOG2002|consen 223 ERALQL--DPTCVSALVALGEVD-------------------------------------LNFNDSDSYKKGVQLLQRAY 263 (1018)
T ss_pred HHHHhc--ChhhHHHHHHHHHHH-------------------------------------HHccchHHHHHHHHHHHHHH
Confidence 999883 453333222222110 00113355677777777776
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 476 SKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIP--DVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNV 553 (997)
Q Consensus 476 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 553 (997)
... .-++...+.|.+.+.-.|+++.++.+...+...-... -...|-.+.++|-..|++++|..+|.+..+....--.
T Consensus 264 ~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 264 KEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred hhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc
Confidence 543 3456678888889999999999999998887753211 1344677899999999999999999988876432113
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhccCCCchhHHHHH
Q 001911 554 VTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAG----DIERACRIYARMKGNAEISDVDIYFRV 629 (997)
Q Consensus 554 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~ 629 (997)
..+--+...|.+.|+++.+...|+...+.. +.+..+...+...|...+ ..+.|..++.......
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~----------- 410 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT----------- 410 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-----------
Confidence 344567888999999999999999998774 555677777777777664 5677777777776542
Q ss_pred hccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 001911 630 LDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAM----SVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEH-- 703 (997)
Q Consensus 630 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 703 (997)
+.|...|-.+...+-...-+.. +..|... ...+-.+.....|.+...+...|++.+|...|......
T Consensus 411 ------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 411 ------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred ------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 5667777777776665544433 6666544 34555677888999999999999999999999988765
Q ss_pred -CCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 001911 704 -GCNPNV------YTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNV-VIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC 775 (997)
Q Consensus 704 -g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 775 (997)
-..++. .+-..+...+-..++.+.|.+.|..+++.. |.- ..|--++......++..+|...++...+..
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 122233 233345566667789999999999998753 443 334444433344578889999999888752
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHh
Q 001911 776 YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK-GCAPNFVTYRVLINHCCAS------------GLLDEAHNLLEEMKQ 842 (997)
Q Consensus 776 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~l~~~~~~~------------g~~~~A~~~~~~m~~ 842 (997)
.-++..+..+...+.+...+..|.+-|.....+ ...+|..+...|.+.|... +..++|++.|.++.+
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 235556666666788888888888877777664 1235777777777755532 223334444444333
Q ss_pred cCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhH
Q 001911 843 TYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNST 922 (997)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 922 (997)
.+ +-+..+-+-++-.++..|++.+|..+|.+..+.-. ....+|
T Consensus 641 ~d----------------------------------pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~---~~~dv~ 683 (1018)
T KOG2002|consen 641 ND----------------------------------PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS---DFEDVW 683 (1018)
T ss_pred cC----------------------------------cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh---hCCcee
Confidence 21 22344556788889999999999999999987532 266799
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 923 LLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 923 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
.+++.+|...|+|..|+++|+...++-..- +..+...|++++.+.|+|.+|.+.+......
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999875433 4889999999999999999999998776553
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.1e-22 Score=209.72 Aligned_cols=437 Identities=14% Similarity=0.103 Sum_probs=358.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001911 486 YSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLK 565 (997)
Q Consensus 486 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 565 (997)
...|..-..+.|++.+|++.....-..+.. +....-.+-..+.+..+++.....-....+.. +.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 445666677889999999887766554322 22333334445666666776665555555443 2356789999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHH-
Q 001911 566 ARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGA- 644 (997)
Q Consensus 566 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 644 (997)
.|++++|+.+++.+++.. +.....|..+..++...|+.+.|.+.|....+. .|+.....+
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql------------------nP~l~ca~s~ 189 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL------------------NPDLYCARSD 189 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc------------------Ccchhhhhcc
Confidence 999999999999999874 345778999999999999999999999998874 455444333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 001911 645 LIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKR 724 (997)
Q Consensus 645 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 724 (997)
+...+-..|++++|...+.+.++.. +-=.+.|+.|...+...|+...|+..|++..+..+. -...|..|...|...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhc
Confidence 3344455899999999999888764 334677999999999999999999999999997644 45678889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001911 725 LDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQ 804 (997)
Q Consensus 725 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 804 (997)
++.|...|.+..... +...+.+..|...|-.+|.++-|+..+++.++.... =+..|+.|..++-..|+..+|++.|.+
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 999999999988753 334577888888899999999999999999986322 367899999999999999999999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-h
Q 001911 805 MSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-V 882 (997)
Q Consensus 805 m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~ 882 (997)
.+.. .|+ ....+.|..+|...|.+++|..++....+-. |. .
T Consensus 346 aL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-----------------------------------p~~a 388 (966)
T KOG4626|consen 346 ALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-----------------------------------PEFA 388 (966)
T ss_pred HHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-----------------------------------hhhh
Confidence 9986 564 7788999999999999999999999877642 44 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
...+.|+..|..+|++++|+..|++++...|. -..++..++..|...|+...|++.|.+++. ++|. .++...|+
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~---fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPT---FADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLA 463 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCch---HHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHH
Confidence 46788999999999999999999999998876 678899999999999999999999999999 8898 78999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCccch
Q 001911 962 KGLIRVNKWEEALQLSYSICHTDINWLQ 989 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~~~~~~~~ 989 (997)
.+|-..|+..+|+.-++..+..+..|.+
T Consensus 464 si~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 9999999999999999999888777754
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5e-19 Score=195.41 Aligned_cols=706 Identities=14% Similarity=0.116 Sum_probs=387.5
Q ss_pred CHHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhcc------Cchhh-HHHH
Q 001911 131 SESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNE------DKEVL-GKLL 203 (997)
Q Consensus 131 ~~~~~~~vl~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~------~~~~~-~~~~ 203 (997)
+++.|..+|..-..|.. +|..+..-|.+.|..++...+++.-... ++... -.++
T Consensus 26 D~~ev~~IL~~e~a~le-------------------~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~ 86 (1018)
T KOG2002|consen 26 DATEVLSILKAEQAPLE-------------------AWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKAL 86 (1018)
T ss_pred ChHHHHHHHHHhcCchh-------------------HHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHH
Confidence 56677777776544443 3555567778888888888888765411 11111 1345
Q ss_pred HHHHHHHHHcCC-----------hHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCch
Q 001911 204 NVLIHKCCRNGF-----------WNVALEELGRLKDFGY-KPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGF 271 (997)
Q Consensus 204 ~~li~~y~~~g~-----------~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 271 (997)
+.+...|+..+. +..|.-+|........ .+...+.......+...-+++.|...|.-+++.. ++|..
T Consensus 87 ~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil 165 (1018)
T KOG2002|consen 87 DILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNIL 165 (1018)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchH
Confidence 555555544322 2233344444333221 1222222221111112222588888888887754 44554
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHHHHHHH--HHHHHccCChHHHHHHHHHHHhCCCCCcH-HhHHHHHHHH
Q 001911 272 TLGCFAYSLCKAGRWKEALELIEK-EEFVPDTVLYTKM--ISGLCEASLFEEAMDLLNRMRARSCIPNV-VTFRILLCGC 347 (997)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~ 347 (997)
.+..-.......|++..|+.+|.+ ..+.|...+=..+ ..++.+.|+.+.|+..|.+..+.. |+. .++..|.-.-
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD--PTCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHH
Confidence 444445555667889999998887 2222322222222 244558889999999999888764 433 2333332222
Q ss_pred Hh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCC
Q 001911 348 LR---KRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLP 424 (997)
Q Consensus 348 ~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 424 (997)
.. ...+..+.+.+....+.. +.|+++.+.|...|.-.|++..++.+...+...- .+.-+.
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-------~~~~~~--------- 306 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-------ENKSIK--------- 306 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-------hhhHHH---------
Confidence 22 233556666666666554 5578888888999999999999999888887521 000000
Q ss_pred CchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhcCCHHHH
Q 001911 425 ASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTST--YSKVIGYLCDASEAEKA 502 (997)
Q Consensus 425 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A 502 (997)
...+..+.+++-..|++++|...+.+..+. .+|.++ +.-+...+.+.|+++.+
T Consensus 307 -----------------------aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 307 -----------------------AESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred -----------------------HHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHH
Confidence 112344566677778888888887777665 344433 34456777777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001911 503 FLLFQEMKRNGLIPDVYTYTILIDNFCKAG----LIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFET 578 (997)
Q Consensus 503 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 578 (997)
...|+.+.+.. +.+..+...|...|...+ ..+.|..++....+.- +.|...|-.+...+.... +..++..|..
T Consensus 362 ~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~ 438 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGN 438 (1018)
T ss_pred HHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHH
Confidence 88777777653 224566666666666554 4566666666666553 225566665555554333 3333555544
Q ss_pred HH----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCC
Q 001911 579 ML----SKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHK 654 (997)
Q Consensus 579 m~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 654 (997)
.. ..+..+.+...|.+...+...|++++|...|...... +... ..++..
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~-----------~~~~--~n~de~-------------- 491 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK-----------LLEV--ANKDEG-------------- 491 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh-----------hhhh--cCcccc--------------
Confidence 32 3344456666666666666777777777666665431 0000 001110
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 655 VREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISK 734 (997)
Q Consensus 655 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 734 (997)
-.++..+-..+...+-..++++.|.++|..+.+..+. -+..|..++-.--..+...+|...+..
T Consensus 492 ---------------~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 492 ---------------KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred ---------------ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 0111111222333344445555555555555554321 122222222111122444555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh------------ccCCHHHHHHH
Q 001911 735 MLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYPNVVTYTAMIDGFG------------KVGKVDKCLEL 801 (997)
Q Consensus 735 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~------------~~g~~~~A~~l 801 (997)
..+.. ..++..++.+.+.+.+...+.-|.+-|...... ...+|+.+..+|.+.|. ..+..++|+++
T Consensus 556 ~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~ 634 (1018)
T KOG2002|consen 556 ALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL 634 (1018)
T ss_pred HHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 54432 334444444555555555555555544443332 11234444444444332 23455677777
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC
Q 001911 802 LRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP 880 (997)
Q Consensus 802 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 880 (997)
|.+.+.. .| |...-+.+.-++...|++.+|..+|.+..+.. ..
T Consensus 635 y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~----------------------------------~~ 678 (1018)
T KOG2002|consen 635 YGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT----------------------------------SD 678 (1018)
T ss_pred HHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH----------------------------------hh
Confidence 7777765 34 66666677777777777777777777765531 12
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVH 959 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 959 (997)
..++|..++++|..+|++-.|+++|+...+..- ...+..+...|+.++...|++.+|...+..+.. ..|. +.....
T Consensus 679 ~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~-~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN 755 (1018)
T KOG2002|consen 679 FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY-KKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFN 755 (1018)
T ss_pred CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhH
Confidence 234566777777777777777777777655421 123666777777777777777777777777776 5563 443333
Q ss_pred HHHHHH-------------------hcCCHHHHHHHHHHhhccCCc
Q 001911 960 LIKGLI-------------------RVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 960 l~~~y~-------------------~~g~~~eA~~~~~~~~~~~~~ 986 (997)
++-+.. ..+..++|.+++..|...+-.
T Consensus 756 ~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 756 LALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333332 345567777777777655443
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.2e-18 Score=205.20 Aligned_cols=184 Identities=17% Similarity=0.047 Sum_probs=82.8
Q ss_pred CChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 001911 653 HKVREAHDLLDAMSVVG--CEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALK 730 (997)
Q Consensus 653 g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 730 (997)
+++++|.+.|+.....+ .+.....++.+...+...|++++|+..+++.++..+. ....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 34445555555444432 1112333444444444455555555555554444221 23344444444444555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 001911 731 VISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC 810 (997)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 810 (997)
.|+++++.. +.+...|..+...+...|++++|...|++..+... .+...+..+...+.+.|++++|+..|++.+..
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 555444432 22334444444444455555555555555444321 13334444444444455555555555544442
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 811 AP-NFVTYRVLINHCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 811 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 841 (997)
.| +...+..+..++...|++++|...+++..
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 23 24444444445555555555555544443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.5e-17 Score=195.82 Aligned_cols=254 Identities=13% Similarity=0.058 Sum_probs=162.5
Q ss_pred cCCHHHHHHHHHHHHHcCC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001911 687 VGKLDEAQMVFSKMLEHGC-NP-NVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAY 764 (997)
Q Consensus 687 ~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 764 (997)
.+++++|.+.|+++.+.+. .| ....+..+...+...|++++|+..+++.++.. +.+...|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 4567777777777776541 22 33455666666667777777777777776642 223446666666777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 765 KVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 765 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
..|+++.+... .+...|..+...+...|++++|+..|++.++. .| +...+..+..++.+.|++++|+..+++..+.
T Consensus 386 ~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 386 EDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777766532 24566666777777777777777777777664 34 4556666677777777777777777776654
Q ss_pred CCCCchhhHHHHHHhHh--HhHHHHHHHHHHhccCCCC--C---Ch-hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 001911 844 YWPTHVAGYRKVIEGFS--REFIVSLGLVNEMGKTDSV--P---IV-PAYRILIDHYIKAGRLEVALELHEEMTSFSSNS 915 (997)
Q Consensus 844 ~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~--p---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 915 (997)
.|.....+..+...+. .++..|...+.+....... + +. ..++..+..+...|++++|+++++++.+.+|.
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~- 540 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE- 540 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-
Confidence 2444444444333222 2456666666554432211 0 10 11222223344568999999999999888765
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 916 AASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 916 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
+..++..++.++...|++++|++.|+++.+.
T Consensus 541 --~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 --CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred --cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6678888999999999999999999999883
No 19
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=3.5e-15 Score=164.51 Aligned_cols=680 Identities=12% Similarity=0.083 Sum_probs=358.5
Q ss_pred CCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 001911 178 DHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLV 257 (997)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 257 (997)
.|+.++|..++.++...++... ..|.+|...|-+.|+.+.++..+-.+.... +.|...|..+.......|.++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~-~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNP-IAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccch-hhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3666666666666655554433 356666666666666666665554444332 22335555555555556666666666
Q ss_pred HHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH
Q 001911 258 YREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNV 337 (997)
Q Consensus 258 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 337 (997)
|..+++.. +++...+---+..|-+.|+...|++.|.++.....+.|.
T Consensus 230 y~rAI~~~---------------------------------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 230 YSRAIQAN---------------------------------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred HHHHHhcC---------------------------------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence 66655543 223333333445566667777777777777665321121
Q ss_pred ----HhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 338 ----VTFRILLCGCLRKRQLGRCKRVLSMMITE-GCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNI 412 (997)
Q Consensus 338 ----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 412 (997)
.+...+++.+...++.+.|.+.++..... +-..+...++.++..|.+...++.|......+......+|..-|-+
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 22233345556666667777777776652 2234456677888888888888888888888876555566544421
Q ss_pred H------HHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHh
Q 001911 413 L------IGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFI--PDTS 484 (997)
Q Consensus 413 l------i~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~--p~~~ 484 (997)
- ...+|..++ +..++... ..+.-|+......+....++......... -+..
T Consensus 357 ~~~~~~~~~~~~~~~~--------------------~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~d 415 (895)
T KOG2076|consen 357 DERRREEPNALCEVGK--------------------ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVD 415 (895)
T ss_pred hhhccccccccccCCC--------------------CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHH
Confidence 1 111222221 11222222 23445555666666666666666666533 3445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001911 485 TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYL 564 (997)
Q Consensus 485 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 564 (997)
.|.-+..++...|++.+|+.+|..+......-+..+|-.+..+|...|.+++|...|+.++...+. +...--+|-..+-
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQ 494 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHH
Confidence 788888899999999999999999988755557788999999999999999999999998886432 4555666777888
Q ss_pred hcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCC
Q 001911 565 KARKPSQANELFETMLSK--------GCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKE 636 (997)
Q Consensus 565 ~~g~~~~A~~~~~~m~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (997)
+.|+.++|.+.++.+..- +..|+........+.+.+.|+.++-..+-..|..... ..+. +.
T Consensus 495 ~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~------~~~~-----~f 563 (895)
T KOG2076|consen 495 QLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFL------KKRY-----IF 563 (895)
T ss_pred hcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHH-----hc
Confidence 899999999999886521 2233333344445556666666664444444432110 0000 00
Q ss_pred CCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHHHHcCCCCCH-
Q 001911 637 PNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVF------SKMLEHGCNPNV- 709 (997)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~g~~p~~- 709 (997)
|+.. ++.. ......+.+........++.+-.+.++......-. .--...|+.-+.
T Consensus 564 ~~~~----------------k~r~--~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 564 PRNK----------------KKRR--RAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred chHH----------------HHHH--HhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 0000 0000 00000001111122222222222222211111100 001111111111
Q ss_pred -HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCC--C-CH
Q 001911 710 -YTYGSLIDRLFKDKRLDLALKVISKMLEDSY--APNV---VIYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCY--P-NV 779 (997)
Q Consensus 710 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~--p-~~ 779 (997)
..+..++.++++.++.++|..+...+..... .++. ..-...+.+.+..+++..|...++.|... +.. | -.
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1233444555566666666666655554311 1111 11223334444556666666666655543 111 1 11
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN--FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIE 857 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 857 (997)
..||...+...+.|+----..++..+... .|+ ..............+.+.-|+..+-+....
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~-------------- 769 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ-------------- 769 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHHh--------------
Confidence 23332333333333222222222222221 121 111111122223344555555544433322
Q ss_pred hHhHhHHHHHHHHHHhccCCCCCChhhHHHHH-HHH----------HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHH
Q 001911 858 GFSREFIVSLGLVNEMGKTDSVPIVPAYRILI-DHY----------IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLI 926 (997)
Q Consensus 858 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~----------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 926 (997)
.|+.|..+.++ -++ .++-..-.++.++++..+...+ .....+..+++
T Consensus 770 ---------------------~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~-~~~QEa~YNig 827 (895)
T KOG2076|consen 770 ---------------------NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRC-EEKQEAFYNIG 827 (895)
T ss_pred ---------------------CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHH
Confidence 25544433222 111 1122344556666666554321 12566777789
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-------CC--C--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 927 ESLSLARKIDKAFELYVDMIRKDG-------SP--E--LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 927 ~~~~~~g~~~~A~~~~~~~~~~~~-------~p--~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
.+|-..|-..-|+.+|+++++... .+ | ..+.+.|.-+|...|+..-|.+++++-+
T Consensus 828 Rayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 828 RAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred HHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 999999999999999999988320 11 1 3577889999999999999999988643
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=2.8e-17 Score=196.94 Aligned_cols=409 Identities=12% Similarity=0.044 Sum_probs=250.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001911 522 TILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKA 601 (997)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 601 (997)
.-.+....-.|+.++|++++.+..... +.+...+..+...+...|++++|.+++++.++.. +.+...+..++..+...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334444444555555555555544311 1233334445555555555555555555544432 22334444444555555
Q ss_pred CCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 001911 602 GDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALI 681 (997)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 681 (997)
|++++|...++++.... +.+.. +..+...+...|+.++|...++++.+.. +.+...+..+.
T Consensus 97 g~~~eA~~~l~~~l~~~-----------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la 157 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-----------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYV 157 (765)
T ss_pred CCHHHHHHHHHHHHHhC-----------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 55555555555554432 23333 4445555555555555555555555443 23333444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH------HhHHHHHHHH-----HhcCCH---HHHHHHHHHHHhC-CCCCCHH-
Q 001911 682 DGFCKVGKLDEAQMVFSKMLEHGCNPNV------YTYGSLIDRL-----FKDKRL---DLALKVISKMLED-SYAPNVV- 745 (997)
Q Consensus 682 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~-----~~~g~~---~~A~~~~~~~~~~-~~~~~~~- 745 (997)
.++...|..+.|+..++.+.. .|+. .....++... ...+++ ++|++.++.+.+. ...|+..
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 555555555555555544332 1111 0111111111 112233 6788888888753 1122221
Q ss_pred HH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-----HH
Q 001911 746 IY----TEMIDGLIKVGKTEEAYKVMLMMEEKGCY-PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-----FV 815 (997)
Q Consensus 746 ~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~ 815 (997)
.+ ...+..+...|++++|+..|+++.+.+.+ |+.. ...+...|...|++++|+..|+++.+. .|. ..
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~ 311 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDE 311 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChH
Confidence 11 11123445779999999999999887532 3322 222567889999999999999998865 232 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh---hhHHHHHHHH
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV---PAYRILIDHY 892 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~ 892 (997)
....+..++...|++++|..+++++.... |.....+. .....|+. ..+..++..+
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~---------------------~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYG---------------------SPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecC---------------------CCCCCCCchHHHHHHHHHHHH
Confidence 56677778899999999999999987643 21110000 00113442 2456788899
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWE 971 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~ 971 (997)
...|++++|++.++++....|+ +...+..++..+...|++++|++.++++++ ..|| ...+..++..+.+.|+++
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~---n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPG---NQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWR 444 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHH
Confidence 9999999999999999988876 788999999999999999999999999999 7797 788999999999999999
Q ss_pred HHHHHHHHhhccC
Q 001911 972 EALQLSYSICHTD 984 (997)
Q Consensus 972 eA~~~~~~~~~~~ 984 (997)
+|..+++.++...
T Consensus 445 ~A~~~~~~ll~~~ 457 (765)
T PRK10049 445 QMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987653
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=3.4e-17 Score=191.70 Aligned_cols=259 Identities=11% Similarity=0.018 Sum_probs=115.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCc
Q 001911 560 IHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNV 639 (997)
Q Consensus 560 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (997)
+..+.+.|++++|..+++...... +-+...+..++.+....|++++|...++++.... +.+.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-----------------P~~~ 110 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-----------------VCQP 110 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-----------------CCCh
Confidence 334444455555555555444432 1222233333334444555555555555544432 2333
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 001911 640 YTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRL 719 (997)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 719 (997)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++.+....+.+ ...+..+ ..+
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l 187 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSF 187 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHH
Confidence 344444444555555555555555554432 2334444444555555555555555555444433221 1112111 124
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH--
Q 001911 720 FKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDK-- 797 (997)
Q Consensus 720 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-- 797 (997)
...|++++|...++.+.+....++...+..+...+.+.|++++|...++++.+... .+...+..+...+...|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhH
Confidence 44455555555555544432112222333334444455555555555555554321 134444445555555555543
Q ss_pred --HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 798 --CLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 798 --A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
|+..|++..+. .| +...+..+...+...|++++|...+++..+
T Consensus 267 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~ 312 (656)
T PRK15174 267 LQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA 312 (656)
T ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555555443 23 344455555555555555555555554443
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=3.2e-18 Score=191.58 Aligned_cols=301 Identities=17% Similarity=0.120 Sum_probs=188.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCh
Q 001911 493 LCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPN---VVTYTALIHAYLKARKP 569 (997)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~ 569 (997)
+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 4456777777777777776532 2455667777777777777777777777766432211 23456666777777777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCC---ceeHHHHH
Q 001911 570 SQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPN---VYTYGALI 646 (997)
Q Consensus 570 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li 646 (997)
++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+...... .+. ...+..+.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~~~la 187 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---------------SLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---------------cchHHHHHHHHHHH
Confidence 77777777776542 345566777777777777777777777776553210 000 11234455
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 001911 647 DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLD 726 (997)
Q Consensus 647 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 726 (997)
..+.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.++.....++..++.+|...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 56666777777777777766543 33455566666677777777777777777766543322345566666777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHH
Q 001911 727 LALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK---VGKVDKCLELLR 803 (997)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~l~~ 803 (997)
+|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.+++
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 777777776654 244445566666677777777777777766654 4566666666655543 346667777777
Q ss_pred HHHhCCCCCCHH
Q 001911 804 QMSSKGCAPNFV 815 (997)
Q Consensus 804 ~m~~~g~~p~~~ 815 (997)
+|.++++.|++.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 777665555443
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.5e-17 Score=194.77 Aligned_cols=333 Identities=10% Similarity=0.005 Sum_probs=270.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 001911 591 FTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGC 670 (997)
Q Consensus 591 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 670 (997)
...++..+.+.|++++|..++....... +.+...+..++.+....|++++|...++++....
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----------------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~- 106 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-----------------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN- 106 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-----------------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-
Confidence 4456677889999999999999998764 4455566677777888999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001911 671 EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEM 750 (997)
Q Consensus 671 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 750 (997)
+.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++.+..... .+...+..+
T Consensus 107 P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~ 184 (656)
T PRK15174 107 VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC 184 (656)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 566778888999999999999999999999987543 567888899999999999999999998876542 233333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 001911 751 IDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGL 829 (997)
Q Consensus 751 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 829 (997)
..+...|++++|...++.+.+....++...+..+...+...|++++|+..++++.+. .| +...+..+..++...|+
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCC
Confidence 347889999999999999887644445555566677889999999999999999986 35 57888899999999999
Q ss_pred HHH----HHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 001911 830 LDE----AHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 830 ~~~----A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
+++ |...+++..+.. |+ ...+..++..+...|++++|+..
T Consensus 262 ~~eA~~~A~~~~~~Al~l~-----------------------------------P~~~~a~~~lg~~l~~~g~~~eA~~~ 306 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFN-----------------------------------SDNVRIVTLYADALIRTGQNEKAIPL 306 (656)
T ss_pred chhhHHHHHHHHHHHHhhC-----------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 986 788888876642 43 45777888999999999999999
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
++++....|. +..++..++.++...|++++|+..|+++.+ ..|+ ...+..++.+|...|++++|+..+++....
T Consensus 307 l~~al~l~P~---~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 307 LQQSLATHPD---LPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9998888765 677788888888899999999999999888 5676 445556788889999999999999887765
Q ss_pred CCc
Q 001911 984 DIN 986 (997)
Q Consensus 984 ~~~ 986 (997)
...
T Consensus 382 ~P~ 384 (656)
T PRK15174 382 RAS 384 (656)
T ss_pred Chh
Confidence 433
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=3.8e-18 Score=191.01 Aligned_cols=298 Identities=17% Similarity=0.195 Sum_probs=250.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc
Q 001911 525 IDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPN---IVTFTALIDGHCKA 601 (997)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~ 601 (997)
...+...|++++|+..|+++.+.++. +..++..+...+...|++++|..+++.+...+..++ ...+..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 44567889999999999999987543 667889999999999999999999999987643222 25678889999999
Q ss_pred CCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHH
Q 001911 602 GDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN----NIVY 677 (997)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~ 677 (997)
|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+...+..+. ...+
T Consensus 121 g~~~~A~~~~~~~l~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-----------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred CCHHHHHHHHHHHHcCC-----------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 99999999999998642 55677899999999999999999999999988653332 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001911 678 DALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV 757 (997)
Q Consensus 678 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 757 (997)
..+...+.+.|++++|...|+++.+..+. +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 66788889999999999999999987533 56678888999999999999999999999764322346788999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHH
Q 001911 758 GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCA---SGLLDEAH 834 (997)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~ 834 (997)
|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++.
T Consensus 263 g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 263 GDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred CCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHH
Confidence 9999999999999886 456667788999999999999999999999886 6998899988888775 56899999
Q ss_pred HHHHHHHhcCC
Q 001911 835 NLLEEMKQTYW 845 (997)
Q Consensus 835 ~~~~~m~~~~~ 845 (997)
..+++|.+...
T Consensus 339 ~~~~~~~~~~~ 349 (389)
T PRK11788 339 LLLRDLVGEQL 349 (389)
T ss_pred HHHHHHHHHHH
Confidence 99999987543
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=8.1e-17 Score=192.94 Aligned_cols=426 Identities=12% Similarity=0.033 Sum_probs=254.7
Q ss_pred ccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001911 446 LNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILI 525 (997)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 525 (997)
.++..+...+......|+.++|++++.+..... +.+...+..+...+.+.|++++|..++++..+..+ .+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344444455555555566666665555554421 22333455555555555556666655555554421 2344445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 001911 526 DNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIE 605 (997)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 605 (997)
..+...|++++|+..++++.+..+. +.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 5555555555555555555554221 333 5555555555555555555555555542 223333344444555555555
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-
Q 001911 606 RACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGF- 684 (997)
Q Consensus 606 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~- 684 (997)
+|...++.+.. .|+ +. ...+ ......++...
T Consensus 168 ~Al~~l~~~~~-------------------~p~---~~-------------~~l~-------------~~~~~~~~r~~~ 199 (765)
T PRK10049 168 PALGAIDDANL-------------------TPA---EK-------------RDLE-------------ADAAAELVRLSF 199 (765)
T ss_pred HHHHHHHhCCC-------------------CHH---HH-------------HHHH-------------HHHHHHHHHhhc
Confidence 55555544321 111 00 0000 00011111111
Q ss_pred ----HhcCCH---HHHHHHHHHHHHc-CCCCCHH-hHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 001911 685 ----CKVGKL---DEAQMVFSKMLEH-GCNPNVY-TYG----SLIDRLFKDKRLDLALKVISKMLEDSYA-PNVVIYTEM 750 (997)
Q Consensus 685 ----~~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l 750 (997)
...+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+++.+.+.+ |+. ....+
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~l 278 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWV 278 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHH
Confidence 112223 6677777777754 1222221 111 1123445668888888888888776421 222 12224
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-----------CCCC---
Q 001911 751 IDGLIKVGKTEEAYKVMLMMEEKGCYP---NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG-----------CAPN--- 813 (997)
Q Consensus 751 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~--- 813 (997)
...|...|++++|...|+++.+..... .......+..++...|++++|.++++++.... -.|+
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 667888888888888888877643211 13445566667788888888888888887652 1233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|+..++++.... +.+...+..++..+.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~----------------------------------P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNA----------------------------------PGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHH
Confidence 2355677888999999999999999987643 223457888999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGL 964 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y 964 (997)
..|++++|++.++++....|+ +...+..++..+...|++++|++.++++++ ..|+......|.+.+
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd---~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPR---NINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 999999999999999998876 778888889999999999999999999999 679865555555554
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.6e-15 Score=177.42 Aligned_cols=442 Identities=14% Similarity=0.098 Sum_probs=260.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 001911 495 DASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANE 574 (997)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 574 (997)
+.|+++.|+..|++..+....-...++ .++..+...|+.++|+.++++..... .........+...+...|++++|++
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555555544221001122 44444455555555555555554110 0111111222334444455555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCC
Q 001911 575 LFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHK 654 (997)
Q Consensus 575 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 654 (997)
+|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++
T Consensus 124 ly~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~------------------dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 124 LWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER------------------DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc------------------CcchHHHHHHHHHHHhcch
Confidence 555555443 223344444445555555555555555555432 2332333222222222334
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH------HHHHHHH-----HhcC
Q 001911 655 VREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTY------GSLIDRL-----FKDK 723 (997)
Q Consensus 655 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~------~~li~~~-----~~~g 723 (997)
..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-... +.+....+ ...++.- ...+
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 434555555555543 334444455555555555555555443332111 01000000 0000000 0011
Q ss_pred ---CHHHHHHHHHHHHhC-CCCCC-HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 001911 724 ---RLDLALKVISKMLED-SYAPN-VVI----YTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK 794 (997)
Q Consensus 724 ---~~~~A~~~~~~~~~~-~~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 794 (997)
-.+.|+.-++.+... +..|. ... .--.+-++...|++.++++.++.+...|.+.-..+-..+.++|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 245566666666652 11132 122 223455778899999999999999988765445677889999999999
Q ss_pred HHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHH
Q 001911 795 VDKCLELLRQMSSKG-----CAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGL 869 (997)
Q Consensus 795 ~~~A~~l~~~m~~~g-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 869 (997)
+++|+.+|+++.... ..++......|..++..++++++|..+++++.+. .|.....+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~-~p~~~~~~----------------- 404 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ-TPYQVGVY----------------- 404 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCcEEecc-----------------
Confidence 999999999997642 1224444678999999999999999999999863 22111000
Q ss_pred HHHhccCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 870 VNEMGKTDSVPIV---PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMI 946 (997)
Q Consensus 870 ~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 946 (997)
......|+. .....++..+...|++.+|++.++++....|+ |......++..+...|.+.+|++.++.+.
T Consensus 405 ----~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~---n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 405 ----GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA---NQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred ----CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 000112332 24556778889999999999999999988887 99999999999999999999999997777
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 947 RKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 947 ~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
. +.|+ ..+...++.++...|+|++|..+.+++.+.-.+
T Consensus 478 ~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 478 S--LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred h--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 7 6786 778889999999999999999999877664433
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=5.7e-14 Score=155.09 Aligned_cols=637 Identities=13% Similarity=0.046 Sum_probs=297.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh--CCCCCCHHHHHHHHHHHHccCCh
Q 001911 241 LIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK--EEFVPDTVLYTKMISGLCEASLF 318 (997)
Q Consensus 241 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~p~~~~~~~li~~~~~~g~~ 318 (997)
..+.+.-.|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-. .-.+.|...|..+..-..+.|++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 3333444488888888888888765 44555677777777777777777665432 22233556777777777777778
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHHcCCHHHHHHH
Q 001911 319 EEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHS----LIHAYCRSGDYSYAYKL 394 (997)
Q Consensus 319 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~ 394 (997)
++|.-+|.+..+.. +++..-+--=...|-+.|+...|.+-+.++.....+.+..-+.. +++.|...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 87777777777663 33333333333444455555555555555555432112111111 12222223333333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHH
Q 001911 395 LSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREM 474 (997)
Q Consensus 395 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m 474 (997)
++.... ..+-..+..+++.+...+.+...++.|...+..+
T Consensus 303 le~~~s----------------------------------------~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~ 342 (895)
T KOG2076|consen 303 LEGALS----------------------------------------KEKDEASLEDLNILAELFLKNKQSDKALMKIVDD 342 (895)
T ss_pred HHHHHh----------------------------------------hccccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 322221 1112223344555566667777777777777766
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC
Q 001911 475 MSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMK--RNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEG--CD 550 (997)
Q Consensus 475 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~ 550 (997)
......+|..-+.+-= .++ .-+.-.. ..+..++..+ -.+.-++......+....+..-+.+.. +.
T Consensus 343 ~~r~~e~d~~e~~~~~-----~~~-----~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~ 411 (895)
T KOG2076|consen 343 RNRESEKDDSEWDTDE-----RRR-----EEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVS 411 (895)
T ss_pred hccccCCChhhhhhhh-----hcc-----ccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChh
Confidence 6533333332221000 000 0000000 0011122222 011111222222222222222222222 22
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHh
Q 001911 551 PNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVL 630 (997)
Q Consensus 551 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 630 (997)
-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|-..|.++.|.+.|+.+....
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~------------ 479 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA------------ 479 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC------------
Confidence 23344555555555555555555555555554433444455555555555555555555555555432
Q ss_pred ccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 631 DNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSV--------VGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLE 702 (997)
Q Consensus 631 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 702 (997)
+.+...-..|...+-+.|+.++|.+.+..+.. .+..|+........+.+.+.|+.++-+.+...|+.
T Consensus 480 -----p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 480 -----PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred -----CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23333344444455555555555555555331 11223333333444455555555554444444433
Q ss_pred cCC----------------------CCCHHhHHHHHHHHHhcCCHHHHHHHHHH------HHhCCCCCCH--HHHHHHHH
Q 001911 703 HGC----------------------NPNVYTYGSLIDRLFKDKRLDLALKVISK------MLEDSYAPNV--VIYTEMID 752 (997)
Q Consensus 703 ~g~----------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~------~~~~~~~~~~--~~~~~li~ 752 (997)
... .-.......++.+-.+.++.....+-... -...+..-+. ..+..++.
T Consensus 555 ~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~ 634 (895)
T KOG2076|consen 555 DFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELIL 634 (895)
T ss_pred HHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHH
Confidence 210 00111111222222222221111110000 0001111111 12334445
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhC-CC--CC-CHHHHHHHHHH
Q 001911 753 GLIKVGKTEEAYKVMLMMEEKGC--YPNV---VTYTAMIDGFGKVGKVDKCLELLRQMSSK-GC--AP-NFVTYRVLINH 823 (997)
Q Consensus 753 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~--~p-~~~~~~~l~~~ 823 (997)
.+++.+++++|..+...+.+... .++. ..-...+.+.+..+++..|...++.|..+ +. .| -...|+...+.
T Consensus 635 ~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~ 714 (895)
T KOG2076|consen 635 SLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSY 714 (895)
T ss_pred HHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 55556666666665555554311 1111 11122334445555666666665555543 11 11 11222222222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001911 824 CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALE 903 (997)
Q Consensus 824 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 903 (997)
..+.|+-.--..++.. +.......+.+....-+......+.+.-|+.
T Consensus 715 ~~~~~q~v~~~R~~~~---------------------------------~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~ 761 (895)
T KOG2076|consen 715 FSKYGQRVCYLRLIMR---------------------------------LLVKNKDDTPPLALIYGHNLFVNASFKHALQ 761 (895)
T ss_pred HHHHHHHHHHHHHHHH---------------------------------HhccCccCCcceeeeechhHhhccchHHHHH
Confidence 2222222111111111 1111111112333345566778899999999
Q ss_pred HHHHHhcCCCCCCcchhhHHHHHHHHHhc-------C---CHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHH
Q 001911 904 LHEEMTSFSSNSAASRNSTLLLIESLSLA-------R---KIDKAFELYVDMIRKDGSP-E-LSTFVHLIKGLIRVNKWE 971 (997)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------g---~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~y~~~g~~~ 971 (997)
.|-++....|+ ++.+-..++.++.+. . ..-+++..+++-.+.- .+ + .++++.+|++|...|-.-
T Consensus 762 ~y~ra~~~~pd---~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR-~~~~~QEa~YNigRayh~~gl~~ 837 (895)
T KOG2076|consen 762 EYMRAFRQNPD---SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELR-RCEEKQEAFYNIGRAYHQIGLVH 837 (895)
T ss_pred HHHHHHHhCCC---CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHcccHH
Confidence 99998887665 444444555444332 1 2566777776665532 22 3 679999999999999999
Q ss_pred HHHHHHHHhhccC
Q 001911 972 EALQLSYSICHTD 984 (997)
Q Consensus 972 eA~~~~~~~~~~~ 984 (997)
-|..+|+++++..
T Consensus 838 LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 838 LAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999874
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=5.5e-15 Score=172.86 Aligned_cols=451 Identities=13% Similarity=0.054 Sum_probs=333.5
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGFIPDTS-TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQ 536 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 536 (997)
..+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|+..+++..... .........+...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 45889999999999999886 45542 22277778888899999999999988321 2234444455678889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 537 ARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 537 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
|+.+|+++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999998655 5677778888999999999999999999876 56666665555555556777679999999988
Q ss_pred ccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH------HHHHHH-H----H
Q 001911 617 NAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVY------DALIDG-F----C 685 (997)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------~~li~~-~----~ 685 (997)
.. +.+...+..+...+.+.|-...|.++..+-...- .+....+ ..+++. . .
T Consensus 198 ~~-----------------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 198 LA-----------------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred hC-----------------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhccccccc
Confidence 63 5567778888899999999999988776532110 1111100 111110 0 0
Q ss_pred hcCC---HHHHHHHHHHHHHc-CCCCCH-HhH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 686 KVGK---LDEAQMVFSKMLEH-GCNPNV-YTY----GSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK 756 (997)
Q Consensus 686 ~~g~---~~~A~~~~~~m~~~-g~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 756 (997)
...+ .+.|+.-++.+... +..|.. ..| .-.+-++...+++.++++.|+.+...+.+....+-..+.++|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 1122 34455555665542 222322 122 23345677899999999999999988766566688889999999
Q ss_pred cCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-------------CCCC-HHHH
Q 001911 757 VGKTEEAYKVMLMMEEKG-----CYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG-------------CAPN-FVTY 817 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~-~~~~ 817 (997)
.+++++|..++..+.... ..++......|.-+|...+++++|..+++++.+.- ..|| ...+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999999999987642 12344446788999999999999999999998731 1223 3345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 001911 818 RVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGR 897 (997)
Q Consensus 818 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 897 (997)
..++..+...|++.+|++.++++.... +-+......+++++...|+
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~a----------------------------------P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTA----------------------------------PANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHhcCC
Confidence 566778889999999999999997653 2345577889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 001911 898 LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWE 971 (997)
Q Consensus 898 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~ 971 (997)
..+|.+.++.+....|. +..+....+.++...+++++|..+.+++.+ ..||......|.+.+.....++
T Consensus 466 p~~A~~~~k~a~~l~P~---~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r~~~~h~~~~ 534 (822)
T PRK14574 466 PRKAEQELKAVESLAPR---SLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDRQRKVHNMYE 534 (822)
T ss_pred HHHHHHHHHHHhhhCCc---cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHHHHHHhhhHH
Confidence 99999999998888775 788888899999999999999999999999 7798555556655544333344
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=1.1e-12 Score=138.95 Aligned_cols=642 Identities=13% Similarity=0.068 Sum_probs=411.7
Q ss_pred ChHHHHHHHHHHHhCCCCCC--------HHhHHHHHHHH-----HhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHH
Q 001911 215 FWNVALEELGRLKDFGYKPT--------QAIYNALIQVF-----LRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLC 281 (997)
Q Consensus 215 ~~~~A~~~~~~m~~~g~~p~--------~~~~~~ll~~~-----~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 281 (997)
+..+|...+-.|....+..+ ...|.+=+... ...++...|..++..+.+.+ +.++..|.+-...--
T Consensus 218 kig~ar~~l~~~kl~qvsdsvtgqtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretn-P~hp~gWIAsArLEE 296 (913)
T KOG0495|consen 218 KIGQARNTLMDMKLNQVSDSVTGQTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETN-PKHPPGWIASARLEE 296 (913)
T ss_pred hhhHHHHHHHhhhhhhccccCCCCcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHH
Confidence 55677777766665433222 12233222221 12345678888888888776 345555666666666
Q ss_pred hcCCHHHHHHHHHh--CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHH
Q 001911 282 KAGRWKEALELIEK--EEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRV 359 (997)
Q Consensus 282 ~~g~~~~A~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 359 (997)
..|++..|..++.+ ..+..+...|---| +....+.|..+....... .|+++.+- +.+---..+...=.++
T Consensus 297 vagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~Avr~--~P~Sv~lW--~kA~dLE~~~~~K~RV 368 (913)
T KOG0495|consen 297 VAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVANAVRF--LPTSVRLW--LKAADLESDTKNKKRV 368 (913)
T ss_pred HhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHHHHHh--CCCChhhh--hhHHhhhhHHHHHHHH
Confidence 77888888777665 23333444554433 233455555555555544 34433221 1111111122222344
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHH
Q 001911 360 LSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEM 439 (997)
Q Consensus 360 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m 439 (997)
+....+. ++.++..|-.. ....+.+.|+-++.+..++ -|..
T Consensus 369 lRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec--cp~s-------------------------------- 409 (913)
T KOG0495|consen 369 LRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC--CPQS-------------------------------- 409 (913)
T ss_pred HHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh--ccch--------------------------------
Confidence 4444443 23334444332 2334444566666666553 1211
Q ss_pred HHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH----HHHCCCC
Q 001911 440 LNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQE----MKRNGLI 515 (997)
Q Consensus 440 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~g~~ 515 (997)
..+..+|.+..-++.|..++++..+. ++.+...|.+....--.+|+.+...++..+ +...|+.
T Consensus 410 ------------~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~ 476 (913)
T KOG0495|consen 410 ------------MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE 476 (913)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee
Confidence 11333445666778888888888775 566777777766666677888888877765 3456777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 001911 516 PDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDP--NVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTA 593 (997)
Q Consensus 516 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 593 (997)
.+...|-.=...+-..|..--+..+....+.-|+.- -..||+.-...|.+.+.++-|..+|...++-- +.+...|..
T Consensus 477 i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlr 555 (913)
T KOG0495|consen 477 INRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLR 555 (913)
T ss_pred ecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHH
Confidence 888888888888888888888888888888777642 34678888888889999999999998887652 445566766
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 001911 594 LIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN 673 (997)
Q Consensus 594 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 673 (997)
.+..--..|..+.-..+|+++.... +.....|-.....+-..|+...|..++....+.. +.+
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~-----------------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pns 617 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQC-----------------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNS 617 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-----------------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCc
Confidence 6666666788888888898887752 4455667777777888899999999999988776 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 674 NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDG 753 (997)
Q Consensus 674 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 753 (997)
...|-.-+..-..+.+++.|..+|.+.... .|+...|.--+...--.++.++|++++++.++. ++.-...|-.+...
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHH
Confidence 778888888888899999999999988875 456667766666666778899999999988875 33335677788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 001911 754 LIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDE 832 (997)
Q Consensus 754 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 832 (997)
+-+.++++.|.+.+..-... ++-.+..|..|.+.--+.|.+-+|..++++..-+ .| |...|...|..-.+.|+.+.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHH
Confidence 88889999998888776554 3445566777777777888999999999998877 45 68889999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHhHhH--hHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 833 AHNLLEEMKQTYWPTHVAGYRKVIEGFSR--EFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 833 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
|..++.+..+.. |.....+...|.-+.+ .-.. .+..+... +.+.-.+..++..+....++++|.+.|.++.+
T Consensus 772 a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTk---s~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 772 AELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTK---SIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHhC-CccchhHHHHHHhccCcccchH---HHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999998888764 3332222222222111 1001 11111111 12222334455555555666666666666666
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 911 FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 911 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.+|. +..+|..+-.-+...|.-++-.+++.+... ..|.
T Consensus 846 ~d~d---~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~ 883 (913)
T KOG0495|consen 846 KDPD---NGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPT 883 (913)
T ss_pred cCCc---cchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCC
Confidence 5553 555555555555556655555555555555 4453
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.1e-13 Score=139.29 Aligned_cols=436 Identities=16% Similarity=0.213 Sum_probs=288.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--cCChh-HHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHH
Q 001911 213 NGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLR--ADRLD-TAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEA 289 (997)
Q Consensus 213 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 289 (997)
.|....+.-++++|.+.|++.+...-..|++.-+- ..++- .-++.|-.|.+.|-.. ..+| |.|.+.+
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--------K~G~vAd- 197 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--------KSGAVAD- 197 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc--------ccccHHH-
Confidence 48888888899999999888887776666664333 22332 2245566666555222 2222 3455444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 001911 290 LELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCY 369 (997)
Q Consensus 290 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 369 (997)
-+|+.. +....++.+||.|+|+-...+.|.+++++.....++.+..+||.+|.+-. +...++++.+|......
T Consensus 198 -L~~E~~--PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 198 -LLFETL--PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMT 270 (625)
T ss_pred -HHHhhc--CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcC
Confidence 344443 23567899999999999999999999999998888999999999997654 23348899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCcc
Q 001911 370 PSPRIFHSLIHAYCRSGDYSYA----YKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVV 445 (997)
Q Consensus 370 ~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 445 (997)
||..|+|+++.+..+.|+++.| .+++.+|++-|+.|...+|..+|..+|+.++-
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp---------------------- 328 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP---------------------- 328 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc----------------------
Confidence 9999999999999999988754 56778899999999999999999888765441
Q ss_pred ccccchhHHHHHHHccCCHHHHHHHHHHHH----HCCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----
Q 001911 446 LNKINVSNFVQCLCGAGKYEKAYNVIREMM----SKGFIP----DTSTYSKVIGYLCDASEAEKAFLLFQEMKRNG---- 513 (997)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~----~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---- 513 (997)
...|..++.++. ...++| |...+...+..|.+..+.+.|.++...+....
T Consensus 329 ------------------~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 329 ------------------QKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred ------------------hhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 112223333322 222222 34456777788888888888888776665321
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 001911 514 LIPD---VYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVT 590 (997)
Q Consensus 514 ~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 590 (997)
+.|+ ..-|..+....|.....+.-..+++.|.-+-.-|+..+...++++..-.|.++-.-+++..++..|..-....
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 2222 3456677888889999999999999998877778888888899988888999888888888887663222221
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhc-CCh-HHHHHHHHHHHhc
Q 001911 591 FTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKV-HKV-REAHDLLDAMSVV 668 (997)
Q Consensus 591 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~-~~A~~~~~~m~~~ 668 (997)
-++++..+.... ..|+...-..+-...+++ -++ +.....-.+|.+.
T Consensus 471 ----------------~eeil~~L~~~k----------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 471 ----------------REEILMLLARDK----------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred ----------------HHHHHHHHhcCC----------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 122223332211 122222111222222211 011 1122223344444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001911 669 GCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN----PNVYTYGSLIDRLFKDKRLDLALKVISKMLEDS 739 (997)
Q Consensus 669 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 739 (997)
.. .....+.+.-.+.+.|..++|.+++..+.+.+-+ |.......+++.-.+.+....|..+++-|...+
T Consensus 519 ~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 519 DW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 33 3445566666778888888888888888665422 333333355555566677777777777776543
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.77 E-value=1.6e-13 Score=150.33 Aligned_cols=751 Identities=12% Similarity=0.061 Sum_probs=388.7
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhH
Q 001911 159 IGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIY 238 (997)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 238 (997)
.|..|+..+|..+|.-||..|+...|- +|.-|...+.++....|+.++.+..++++.+.+. .|...||
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 588999999999999999999999988 8888888777788889999999999999888775 6888999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH-------HCCCCCCchh--------------HHHHHHHHHhcCCHHHHHHHHHhCC
Q 001911 239 NALIQVFLRADRLDTAYLVYREML-------DAGFSMDGFT--------------LGCFAYSLCKAGRWKEALELIEKEE 297 (997)
Q Consensus 239 ~~ll~~~~~~g~~~~a~~~~~~m~-------~~g~~~~~~~--------------~~~li~~~~~~g~~~~A~~~~~~~~ 297 (997)
..|+.+|...|++..-..+=+.|. ..|+.....- ....+..+.-.|-++.+++++...+
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999876222222122 1222111111 1122333344555666666665533
Q ss_pred CCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 001911 298 FVPDTVLYTKMISGLCEAS-LFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFH 376 (997)
Q Consensus 298 ~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 376 (997)
........-..++-..... .+++-..+-....+ .|+..+|..++++-.-.|+.+.|..++..|.+.|++.+...|.
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 2111111111233333222 22333333222222 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchH---HHHH--HHHHHHHHH----------
Q 001911 377 SLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDV---FELA--EKAYAEMLN---------- 441 (997)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~---~~~a--~~~~~~m~~---------- 441 (997)
.|+-+ .++...+..++..|.+.|+.|+..|+..-+-....+++....+. .+.+ ..++.+|..
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 98877 88999999999999999999999999876554444332110000 0000 001111111
Q ss_pred ---------------cCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCC--CCC-CHhhHHHHHHHHHhcCCHHHHH
Q 001911 442 ---------------AGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKG--FIP-DTSTYSKVIGYLCDASEAEKAF 503 (997)
Q Consensus 442 ---------------~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g--~~p-~~~~~~~li~~~~~~g~~~~A~ 503 (997)
.|.......+ .+..-+..+|+-++..++...+..-- ..+ ++..|..++.-|.+.-+.....
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 1111111111 11111222444444444444443211 111 1122333332222211100000
Q ss_pred HHHH--HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CC-------CCHHHHHHHHHHHHhcCChh
Q 001911 504 LLFQ--EMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEG----CD-------PNVVTYTALIHAYLKARKPS 570 (997)
Q Consensus 504 ~~~~--~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~-------~~~~~~~~ll~~~~~~g~~~ 570 (997)
.++. +..... .+...---++....+. +...+.+-+..+.... .. +-...-+.++..++..-+..
T Consensus 400 ~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 400 RIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000000 0000000011111110 1111222221111110 00 01112344555566555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHH
Q 001911 571 QANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLC 650 (997)
Q Consensus 571 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 650 (997)
+++..-++....- .+ ..|..||+.++..+..+.|..+..+...... ...-+..-+..+.+.+.
T Consensus 477 K~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~--------------s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 477 KILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDE--------------SIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccch--------------hhhcccHhHHHHHHHHH
Confidence 5554444443321 11 5688899999999999999998888764431 13455566888889999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 001911 651 KVHKVREAHDLLDAMSVVGCEPN--NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLA 728 (997)
Q Consensus 651 ~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 728 (997)
+.+....+..++.++.+.-...+ ..+.-.+++.-...|+.+...++++-+...|+.-+ .-++....+.++...|
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAA 615 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhh
Confidence 99999999999998876322222 34455667777788999999999888888776531 2233344455555556
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH---------------------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001911 729 LKVISKMLEDSYAPNVVIYTEMIDG---------------------LIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMID 787 (997)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~li~~---------------------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 787 (997)
.+.++...+. .+|.+.....+... |.+.|+..+|.++.+. .|+ .+-+.- +
T Consensus 616 ~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et---pG~----r~r~~R-D 686 (1088)
T KOG4318|consen 616 QEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET---PGV----RCRNGR-D 686 (1088)
T ss_pred hhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc---Ccc----cccCCC-c
Confidence 5555544332 23333332222222 3344444443333221 000 000000 1
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhH--hHHH
Q 001911 788 GFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSR--EFIV 865 (997)
Q Consensus 788 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~--~~~~ 865 (997)
.|...|...--..+.+.+.+.| ....|+..|.+.|+++.|..++.++.-...+........|++.-.+ +.-+
T Consensus 687 r~~de~e~~~lEll~elt~~lg------~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe 760 (1088)
T KOG4318|consen 687 RDTDEGEIVPLELLLELTHELG------KNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPE 760 (1088)
T ss_pred cccccCccccHHHHHHHHhHhH------HHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchh
Confidence 1111122222222222222221 1122555566666666666666655421111111112222211111 1111
Q ss_pred HHHHHHHhccC-CCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 866 SLGLVNEMGKT-DSVPIVP-AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYV 943 (997)
Q Consensus 866 a~~~~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 943 (997)
+....+..... ...|... .|.--+....+-...+.|.+.+.+..+..+ +.+...+..+.+++.... ...|.. ..
T Consensus 761 ~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~--v~tad~ls~f~k~L~~nd-~~aa~s-ha 836 (1088)
T KOG4318|consen 761 IQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT--VSTADELSDFLKCLVKND-QLAAQS-HA 836 (1088)
T ss_pred HHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHhcC-HHHHHh-cc
Confidence 22222222111 1123222 222223333444455588899999887642 346677777777776665 222222 22
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001911 944 DMIRKDGSPELSTFVHLIKGLIRVNKWEEALQ 975 (997)
Q Consensus 944 ~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~ 975 (997)
. |..-.......++..+.+.-.|.||..
T Consensus 837 ~----Ges~~~l~tsRli~~llRrlgl~EA~~ 864 (1088)
T KOG4318|consen 837 S----GESSKELLTSRLINILLRRLGLAEALS 864 (1088)
T ss_pred c----ccchhhhhhHHHHHHHHHHhhHHHHHH
Confidence 1 433333344456666666666788876
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=4.7e-11 Score=126.94 Aligned_cols=411 Identities=13% Similarity=0.088 Sum_probs=325.3
Q ss_pred HHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001911 438 EMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPD--TSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLI 515 (997)
Q Consensus 438 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 515 (997)
++..+|+..+...+..-...+-..|.+-....+....+..|+... ..||..-...|.+.+-++-|+.+|...++-. +
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p 547 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-P 547 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-c
Confidence 344556666666666666666677888888888888887775432 3578888888999999999999999888763 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 516 PDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALI 595 (997)
Q Consensus 516 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 595 (997)
-+...|...+..--..|..++-..+|++....-+ -....|.....-+-..|+...|..++.+..+.. +.+...|..-+
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaav 625 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAV 625 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3677888888887888999999999999988733 356677777777888899999999999998875 44677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-H
Q 001911 596 DGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN-N 674 (997)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~ 674 (997)
........++.|..+|.+.... .|+..+|..-+...--.++.++|.+++++.++. -|+ .
T Consensus 626 Kle~en~e~eraR~llakar~~------------------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~ 685 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI------------------SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFH 685 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc------------------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchH
Confidence 8999999999999999998764 677777877777777789999999999888865 344 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGL 754 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 754 (997)
..|..+.+.+-+.++.+.|.+.|..-.+.- +.....|..+...--+.|.+-.|..++++..-.+ +.+...|-..|.+-
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRME 763 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHH
Confidence 567788888888899999988887766552 2245567777777788899999999999987665 56788999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAH 834 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 834 (997)
.+.|+.+.|..++.++.+. ++-+...|..-|....+.++-...++.+++. .-|..+...+...+....++++|.
T Consensus 764 lR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998886 5557778888887777777766665555544 456777888888999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 001911 835 NLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 835 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
++|.+..... |+ -++|-.+...+.++|.-++-.+++.+.....|
T Consensus 838 ~Wf~Ravk~d-----------------------------------~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 838 EWFERAVKKD-----------------------------------PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHccC-----------------------------------CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 9999887653 44 34788888889999999999999999988776
Q ss_pred C
Q 001911 914 N 914 (997)
Q Consensus 914 ~ 914 (997)
.
T Consensus 883 ~ 883 (913)
T KOG0495|consen 883 T 883 (913)
T ss_pred C
Confidence 4
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.72 E-value=3.1e-13 Score=148.10 Aligned_cols=251 Identities=16% Similarity=0.147 Sum_probs=151.8
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 001911 186 QFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAG 265 (997)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 265 (997)
.++..+...|..+...+|..+|.-||..|+.+.|- +|.-|+-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56777777777777778888888888888888887 7777776667777788888888888888877665
Q ss_pred CCCCchhHHHHHHHHHhcCCHH---HHHHHHHh-------CCC-CCCHHHH-------------HHHHHHHHccCChHHH
Q 001911 266 FSMDGFTLGCFAYSLCKAGRWK---EALELIEK-------EEF-VPDTVLY-------------TKMISGLCEASLFEEA 321 (997)
Q Consensus 266 ~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~-------~~~-~p~~~~~-------------~~li~~~~~~g~~~~A 321 (997)
.|-..||..+..+|...|++. ...+.++. .|+ .|....| ..+|.-..-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 667778888888888888644 33332221 111 1111111 1223333444555566
Q ss_pred HHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001911 322 MDLLNRMRARS-CIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRK 400 (997)
Q Consensus 322 ~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (997)
++++..|.... ..|-.+ ++.-+.. .....+.++......--.|++.+|..+++.-...|+++.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 66555543221 111111 2322222 2233444444444332257777888888877788888888888888888
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCC
Q 001911 401 CGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGK 463 (997)
Q Consensus 401 ~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 463 (997)
.|...+...|-.||-| .+ ...-++.+..-|.+.|+.|+..|+...+..+..+|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~------~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---IN------AAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---Cc------cchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8877777766666644 11 134445555555566666666666555555554433
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1.8e-14 Score=145.44 Aligned_cols=482 Identities=17% Similarity=0.148 Sum_probs=295.0
Q ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 001911 451 VSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTY-SKVIGYLCDASEAEKAFLLFQEMKRNGLIPD----VYTYTILI 525 (997)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li 525 (997)
+.++.+.|..+....+|+..++-+++...-|+.... ..+.+.+.+..++.+|++.++.....-+..+ ..+.+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 334555566677778888888888777666665543 2334556677778888888877766522222 23444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------------HHHHH
Q 001911 526 DNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNI------------VTFTA 593 (997)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~------------~~~~~ 593 (997)
..+.+.|+++.|+..|+...+. .|+..+--.|+.++...|+-++..+.|.+|+.....||. ...+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5677888999999888887775 467666555666666788888888888888765433332 22222
Q ss_pred HHH-----HHHHcC--CHHHHHHHHHHHHhccCCCc----hhHHHHHhccCC-CCCCceeHHHHHHHHHhcCChHHHHHH
Q 001911 594 LID-----GHCKAG--DIERACRIYARMKGNAEISD----VDIYFRVLDNNC-KEPNVYTYGALIDGLCKVHKVREAHDL 661 (997)
Q Consensus 594 li~-----~~~~~g--~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 661 (997)
-|. -.-+.+ +-++++-.-.++..-...++ -+.....+.... .+.-...--.-...|.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 221 111111 11222222112211100000 000000000000 000000001112357889999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001911 662 LDAMSVVGCEPNNIVYDALIDGFCK--VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDS 739 (997)
Q Consensus 662 ~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 739 (997)
+.-+....-..-...-+.|-..+.. -.++..|..+-+..+...- -+......-...-...|++++|.+.|++.+...
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 9888765433333333333333322 3367788887777665421 122222222333456789999999999998764
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 001911 740 YAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYR 818 (997)
Q Consensus 740 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~ 818 (997)
-.-....|| +.-.+-..|++++|++.|-++..- +..+......+...|....+..+|++++-+.... .| |+....
T Consensus 521 asc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ils 596 (840)
T KOG2003|consen 521 ASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILS 596 (840)
T ss_pred hHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHH
Confidence 322233333 334567789999999999887643 2236677778888899999999999998777654 45 789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 001911 819 VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL 898 (997)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 898 (997)
.|.+.|-+.|+...|.+..-.-.. ++ +-+..+..+|+..|....-+
T Consensus 597 kl~dlydqegdksqafq~~ydsyr-yf---------------------------------p~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYR-YF---------------------------------PCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhccc-cc---------------------------------CcchHHHHHHHHHHHhhHHH
Confidence 999999999999999887654332 22 23455677788888888888
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESL-SLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLS 977 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~ 977 (997)
++|+..|+++.-..| +...|-.++..| .+.|+|.+|..+|+..-++ +..|...+..|.++....|. .+|.++.
T Consensus 643 ekai~y~ekaaliqp----~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~ 716 (840)
T KOG2003|consen 643 EKAINYFEKAALIQP----NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYA 716 (840)
T ss_pred HHHHHHHHHHHhcCc----cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHH
Confidence 888888888765543 667777666555 5568888888888887663 33357777788888777774 4444444
Q ss_pred HH
Q 001911 978 YS 979 (997)
Q Consensus 978 ~~ 979 (997)
++
T Consensus 717 ~k 718 (840)
T KOG2003|consen 717 DK 718 (840)
T ss_pred HH
Confidence 33
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.8e-12 Score=130.64 Aligned_cols=362 Identities=15% Similarity=0.211 Sum_probs=201.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccc
Q 001911 369 YPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNK 448 (997)
Q Consensus 369 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 448 (997)
+-...++..||.+.||.-..+.|.++|++-.....+.+..++|.+|.+-.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S------------------------------ 253 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS------------------------------ 253 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH------------------------------
Confidence 33456677777777777777777777777766656666677777765431
Q ss_pred cchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHH
Q 001911 449 INVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKA----FLLFQEMKRNGLIPDVYTYTIL 524 (997)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~l 524 (997)
+....+++.+|....+.||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+
T Consensus 254 ---------------~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~i 318 (625)
T KOG4422|consen 254 ---------------YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLI 318 (625)
T ss_pred ---------------hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHH
Confidence 122255666666666677777777777777666665443 4555666677777777777777
Q ss_pred HHHHHHcCCHHH-HHHHHHHHHHc----CCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCC---H
Q 001911 525 IDNFCKAGLIEQ-ARNWFDEMVKE----GCD----PNVVTYTALIHAYLKARKPSQANELFETMLSKG----CIPN---I 588 (997)
Q Consensus 525 i~~~~~~g~~~~-A~~~~~~m~~~----g~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~ 588 (997)
|..+++-++..+ |..++.++... .++ -|...|...+..|.+..+.+-|.++..-+.... +.|+ .
T Consensus 319 ik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~ 398 (625)
T KOG4422|consen 319 IKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRN 398 (625)
T ss_pred HHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHH
Confidence 776666665433 44444444332 111 133445555666666677776666665554321 2222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001911 589 VTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVV 668 (997)
Q Consensus 589 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 668 (997)
.-|..+....|+....+.-...|+.|.... .-|+..+...++.+.--.++++-.-+++..+...
T Consensus 399 fYyr~~~~licq~es~~~~~~~Y~~lVP~~----------------y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 399 FYYRKFFDLICQMESIDVTLKWYEDLVPSA----------------YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccce----------------ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 235566677777777777777887776443 3566666666777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CCH-HHHHHHHHHHHhCCCCCCHHH
Q 001911 669 GCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKD-KRL-DLALKVISKMLEDSYAPNVVI 746 (997)
Q Consensus 669 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~-~~A~~~~~~~~~~~~~~~~~~ 746 (997)
|..-+...- ++++..|.+..+.|+...-..+-....++ -++ +.....-.++.+..+ ....
T Consensus 463 ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~ 524 (625)
T KOG4422|consen 463 GHTFRSDLR----------------EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATS 524 (625)
T ss_pred hhhhhHHHH----------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhH
Confidence 532222221 23333333333333322111111111111 011 111112233333332 3445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEKGC----YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG 809 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 809 (997)
.+.+.-.+.+.|+.++|.++|.-+...+- .|......-+++.-.+.++..+|+..++-|...+
T Consensus 525 l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 525 LNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 55566666677777777777776654321 2333333344555556667777777777776543
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=1.3e-12 Score=132.17 Aligned_cols=287 Identities=15% Similarity=0.137 Sum_probs=213.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001911 526 DNFCKAGLIEQARNWFDEMVKEGCDPNVVTYT-ALIHAYLK-ARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGD 603 (997)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 603 (997)
..|.+.|+++.|+++++-+.+..-+.-...-| .-+.-|.+ -.++.+|.+.-+..+... .-+......-.+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 45779999999999999888764332222222 22223333 346677777777666443 3344444444445567899
Q ss_pred HHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHH---HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 001911 604 IERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALI---DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDAL 680 (997)
Q Consensus 604 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 680 (997)
+++|.+.|++..... ...-.+|. -.+-+.|++++|++.|-++...- ..+..++..+
T Consensus 506 ~dka~~~ykeal~nd--------------------asc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qi 564 (840)
T KOG2003|consen 506 LDKAAEFYKEALNND--------------------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQI 564 (840)
T ss_pred HHHHHHHHHHHHcCc--------------------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 999999999987543 22222222 24667899999999998775432 4567788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001911 681 IDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT 760 (997)
Q Consensus 681 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 760 (997)
...|....+...|++++.+.... ++.|+....-|.+.|-+.|+-..|.+.+-+-.+- ++-+..+...|...|....-+
T Consensus 565 aniye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHH
Confidence 99999999999999999888776 4458889999999999999999999887665543 567888989999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 761 EEAYKVMLMMEEKGCYPNVVTYTAMIDGF-GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEE 839 (997)
Q Consensus 761 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (997)
++|+.+|++..- +.|+..-|-.+|..| .+.|++++|.++|+....+ ++.|......|++.+...|. .+|.++-++
T Consensus 643 ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 643 EKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 999999998765 689999999888665 5789999999999999887 45588899999999888775 344444444
Q ss_pred H
Q 001911 840 M 840 (997)
Q Consensus 840 m 840 (997)
+
T Consensus 719 l 719 (840)
T KOG2003|consen 719 L 719 (840)
T ss_pred H
Confidence 3
No 37
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.8e-09 Score=120.10 Aligned_cols=349 Identities=13% Similarity=0.123 Sum_probs=186.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcC
Q 001911 135 VVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNG 214 (997)
Q Consensus 135 ~~~vl~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 214 (997)
|.-+.....+|++|++. .++.+...--..|-.-...|...|++.+|-.+-..-+..- --+..+.+..=..=...|
T Consensus 334 Vpyi~~~LqnpeLal~~----A~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPrgI-LRt~~Ti~kFq~V~a~~G 408 (1666)
T KOG0985|consen 334 VPYITNVLQNPELALRL----AVRANLAGAENLFVRRFNELFAQGEYEEAAKVAASSPRGI-LRTPGTINKFQSVPAQPG 408 (1666)
T ss_pred ehhhhccccChHHHHHh----hhhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhCchhh-hcCHHHHHHHHcCCCCCC
Confidence 44555667788888763 2333333333344445556666788877766554433210 001123333333334456
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH-----HCC--CCC-C----c------hhHHHH
Q 001911 215 FWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREML-----DAG--FSM-D----G------FTLGCF 276 (997)
Q Consensus 215 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-----~~g--~~~-~----~------~~~~~l 276 (997)
...--+..|..+...| +.|..----+.+.-...|+.+....++.+=. +.| +.| | . -+-+-.
T Consensus 409 q~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KV 487 (1666)
T KOG0985|consen 409 QPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKV 487 (1666)
T ss_pred CCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHH
Confidence 6666777777777766 4444333334444444555555544443221 112 111 1 1 122455
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHH
Q 001911 277 AYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRC 356 (997)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 356 (997)
+.+|+.+|.++++.-...+.|..||... +|+.+.+ -.++.+.++...|.... |...-++.+.+.+...+....+
T Consensus 488 i~cfAE~Gqf~KiilY~kKvGyTPdymf---lLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~ 561 (1666)
T KOG0985|consen 488 IQCFAETGQFKKIILYAKKVGYTPDYMF---LLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQC 561 (1666)
T ss_pred HHHHHHhcchhHHHHHHHHcCCCccHHH---HHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhh
Confidence 7788889999999999999898998654 5555555 67889998888887643 2222333333333333333333
Q ss_pred HHHHHHHHHCCC-----------------CCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------
Q 001911 357 KRVLSMMITEGC-----------------YPS------------PRIFHSLIHAYCRSGDYSYAYKLLSKMRKC------ 401 (997)
Q Consensus 357 ~~~~~~m~~~g~-----------------~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 401 (997)
...+-...+... .|+ ..-+..+.+.|-+.|-+.+|++.|.++..-
T Consensus 562 TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVh 641 (1666)
T KOG0985|consen 562 TSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVH 641 (1666)
T ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHH
Confidence 332222222110 111 112455677888999999999888776431
Q ss_pred --CCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHC--
Q 001911 402 --GFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSK-- 477 (997)
Q Consensus 402 --g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~-- 477 (997)
-+.|+-. . ++.+. -.++.+.+.+..|+..++..+-..+-.+..-|+..=-.+.-+++|+....-
T Consensus 642 th~L~pEwL-----v-~yFg~------lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eG 709 (1666)
T KOG0985|consen 642 THLLNPEWL-----V-NYFGS------LSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEG 709 (1666)
T ss_pred hccCCHHHH-----H-HHHHh------cCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchh
Confidence 1122111 1 11111 125667777777777777666665555555555554455555555544321
Q ss_pred ---------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 478 ---------GFIPDTSTYSKVIGYLCDASEAEKAFLLFQ 507 (997)
Q Consensus 478 ---------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 507 (997)
++..|....-..|.+.|+.|++.+...+.+
T Consensus 710 L~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicr 748 (1666)
T KOG0985|consen 710 LYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICR 748 (1666)
T ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHh
Confidence 123344444555666677777666665543
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=4.4e-13 Score=149.06 Aligned_cols=294 Identities=12% Similarity=0.025 Sum_probs=223.0
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 001911 650 CKVHKVREAHDLLDAMSVVGCEPN-NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLA 728 (997)
Q Consensus 650 ~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 728 (997)
...|+++.|.+.+.+..+.. |+ ...+-....+....|+++.|.+.+.++.+..+.+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 45799999999998887654 44 3444455677888999999999999998765443333444457888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHH
Q 001911 729 LKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTA----MIDGFGKVGKVDKCLELLRQ 804 (997)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----li~~~~~~g~~~~A~~l~~~ 804 (997)
...++.+.+.. +.+...+..+...+.+.|++++|.+++..+.+.+.. +...+.. ...+....+..+++.+.+.+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999875 456778889999999999999999999999988654 3333321 11122333444445556666
Q ss_pred HHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC
Q 001911 805 MSSKGC---APNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI 881 (997)
Q Consensus 805 m~~~g~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 881 (997)
+.+... +.+...+..++..+...|+.++|.+.+++..+..+ +
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p-----------------------------------d 295 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG-----------------------------------D 295 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-----------------------------------C
Confidence 666421 12788899999999999999999999999987652 2
Q ss_pred hhh---HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcch--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 001911 882 VPA---YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASR--NSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELST 956 (997)
Q Consensus 882 ~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 956 (997)
... ...........++.+.+++.+++..+..|+ ++ .....+++.+.+.|++++|.+.++++......|+...
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~---~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD---KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 221 111222233457888999999999988776 66 7888999999999999999999995333336899888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
+.+|+..+.+.|+.++|.+++++.++.-.
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999998655433
No 39
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=99.61 E-value=3.3e-17 Score=156.03 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=63.2
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccC-----CCCCCCCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLM-----NPSAADSVPNF 92 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 92 (997)
-||+||+|||+|||++|||+++|+|+|+|++++.++|-|+|++ .|+||+||||++ +.|||+.|++|
T Consensus 74 LFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e---------~ERyE~lrHCryVDEVi~~APW~lt~EF 144 (348)
T KOG2804|consen 74 LFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNE---------NERYEALRHCRYVDEVIPNAPWTLTPEF 144 (348)
T ss_pred HhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecCh---------HHHHHHhhhhhhhhhhccCCCccccHHH
Confidence 4999999999999999999999999999999999999999999 999999999994 67999999988
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=3e-12 Score=141.53 Aligned_cols=285 Identities=12% Similarity=0.048 Sum_probs=221.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 001911 652 VHKVREAHDLLDAMSVVGCEPNNIV-YDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALK 730 (997)
Q Consensus 652 ~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 730 (997)
.|++++|.+.+....... ++... |.....+..+.|+++.|...+.++.+....+...........+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998888765542 22333 333344558899999999999999886433222332344678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHH
Q 001911 731 VISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNV-------VTYTAMIDGFGKVGKVDKCLELLR 803 (997)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~ 803 (997)
.++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999875 556788889999999999999999999999987655322 133333444444555666677777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh
Q 001911 804 QMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP 883 (997)
Q Consensus 804 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 883 (997)
.+... .+.+......+...+...|+.++|.+.+++..+.. |+..
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~-----------------------------------~~~~ 297 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ-----------------------------------YDER 297 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------------------------CCHH
Confidence 76553 23478889999999999999999999998887632 3332
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
. .++......++.+++++..++..+..|+ |...+..++..+...+++++|.+.++++.+ ..|+...+..|+.+
T Consensus 298 l--~~l~~~l~~~~~~~al~~~e~~lk~~P~---~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~ 370 (398)
T PRK10747 298 L--VLLIPRLKTNNPEQLEKVLRQQIKQHGD---TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADA 370 (398)
T ss_pred H--HHHHhhccCCChHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHH
Confidence 1 1233444569999999999999998876 888899999999999999999999999999 67999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhc
Q 001911 964 LIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~~ 982 (997)
+.+.|+.++|.+++++-+.
T Consensus 371 ~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 371 LDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 9999999999999987543
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=4.5e-13 Score=143.74 Aligned_cols=283 Identities=15% Similarity=0.095 Sum_probs=229.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHHHHHH
Q 001911 653 HKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGC--NPNVYTYGSLIDRLFKDKRLDLALK 730 (997)
Q Consensus 653 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~ 730 (997)
-+.++|...|..+.... .....+...+..+|...+++++|.++|+.+.+..+ .-+..+|.+.+.-+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 35689999999955443 44457778899999999999999999999988642 1266778877764432 12222
Q ss_pred HHH-HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 001911 731 VIS-KMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK 808 (997)
Q Consensus 731 ~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 808 (997)
.+. .+++. -+..+.+|-++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+.-
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222 22332 2456789999999999999999999999999985 44 6788888888888899999999999998864
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHH
Q 001911 809 GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYR 886 (997)
Q Consensus 809 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~ 886 (997)
.| +...|..+...|.+.++++.|+..|++..+.. |. .....
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-----------------------------------P~nsvi~~ 527 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-----------------------------------PSNSVILC 527 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-----------------------------------ccchhHHh
Confidence 45 46678888899999999999999999987643 43 44566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLI 965 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~ 965 (997)
.++..+.+.|+.|+|+++++++...+|. |+..-...+..+...+++++|+..+|++.+ +.|+ ..++..++++|-
T Consensus 528 ~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 528 HIGRIQHQLKRKDKALQLYEKAIHLDPK---NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYK 602 (638)
T ss_pred hhhHHHHHhhhhhHHHHHHHHHHhcCCC---CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHH
Confidence 7888999999999999999999999876 788888888999999999999999999999 8896 788999999999
Q ss_pred hcCCHHHHHHHHHHhhccCC
Q 001911 966 RVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 966 ~~g~~~eA~~~~~~~~~~~~ 985 (997)
+.|+.+.|+.-+-=+.+.+.
T Consensus 603 ~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 603 RLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHccchHHHHhhHHHhcCCC
Confidence 99999999988866555443
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.2e-14 Score=153.51 Aligned_cols=260 Identities=17% Similarity=0.140 Sum_probs=107.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001911 679 ALIDGFCKVGKLDEAQMVFSKMLEHG-CNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV 757 (997)
Q Consensus 679 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 757 (997)
.+...+.+.|++++|++++++..... ...+...|..+.......++.+.|.+.++++...+. -++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 45677778888888888886655443 233445555566666678888888888888887642 245566666666 678
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001911 758 GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG-CAPNFVTYRVLINHCCASGLLDEAHNL 836 (997)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 836 (997)
+++++|.+++.+.-+.. +++..+..++..+.+.|+++++.++++++.... ..++...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899988887766542 456667778888888899999999988877532 234677888888889999999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 001911 837 LEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS 915 (997)
Q Consensus 837 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 915 (997)
+++..+.. |+ ......++..+...|+.+++.++++...+..|.
T Consensus 169 ~~~al~~~-----------------------------------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~- 212 (280)
T PF13429_consen 169 YRKALELD-----------------------------------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD- 212 (280)
T ss_dssp HHHHHHH------------------------------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-
T ss_pred HHHHHHcC-----------------------------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-
Confidence 98887643 54 456777888888999999988888888765433
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 916 AASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 916 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
++..+..++.++...|++++|+..++++.+ ..| |+.+..++++++...|+.++|..++.++..
T Consensus 213 --~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 213 --DPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --SCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHT-----------------
T ss_pred --HHHHHHHHHHHhcccccccccccccccccc--cccccccccccccccccccccccccccccccccc
Confidence 667888889999999999999999999888 567 588888999999999999999988887643
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.4e-11 Score=126.81 Aligned_cols=226 Identities=13% Similarity=0.044 Sum_probs=123.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001911 686 KVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYK 765 (997)
Q Consensus 686 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 765 (997)
-.|+.-.|..-|+..++....++. .|.-+...|....+.++....|++..+.+ +-|+.+|..-...+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 345666666666666665443222 24445555666666666666666666543 3344455555555555566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001911 766 VMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYW 845 (997)
Q Consensus 766 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 845 (997)
=|++.++.... +...|-.+.-+..+.++++++...|++...+ ++-....|+....++..+++++.|.+.++...+...
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 66666654222 4455555555555666666666666666665 222456666666666666666666666665543210
Q ss_pred CCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHH
Q 001911 846 PTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAY--RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTL 923 (997)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 923 (997)
. ..++.-+...+ ..++.. .-.+++..|+.+++++++.+|. ...++.
T Consensus 494 ~----------------------------~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk---ce~A~~ 541 (606)
T KOG0547|consen 494 R----------------------------EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK---CEQAYE 541 (606)
T ss_pred c----------------------------cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch---HHHHHH
Confidence 0 00001111111 111112 2236666666666666666654 556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 924 LLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.|+....+.|+.++|+++|++...
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666666654
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.56 E-value=5e-09 Score=114.72 Aligned_cols=417 Identities=17% Similarity=0.093 Sum_probs=267.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-H
Q 001911 513 GLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVT-F 591 (997)
Q Consensus 513 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~ 591 (997)
.+.-|..+|..|.-+...+|+++.+.+.|++....-+. ....|+.+...|...|.-..|..+++.-....-.|+..+ +
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34457888999999999999999999999998765333 667888888999999999999999887665432344333 3
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhc-----------CChHHHH
Q 001911 592 TALIDGHC-KAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKV-----------HKVREAH 659 (997)
Q Consensus 592 ~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~ 659 (997)
...-..|. +.+..++++.+-.++........ -.-....|..+.-+|... ....+++
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~------------~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQR------------SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh------------hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 33333333 45777777777776655211000 011222333333333321 2245678
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001911 660 DLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDS 739 (997)
Q Consensus 660 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 739 (997)
+.+++..+.+ +.|..+.-.+.--|+..++.+.|.+...+..+.+...+...|..|.-.+...+++.+|+.+.+...+.
T Consensus 465 qale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E- 542 (799)
T KOG4162|consen 465 QALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE- 542 (799)
T ss_pred HHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-
Confidence 8888887766 33433333444457788999999999999999877778899999999999999999999999887764
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHH--HHH----HHHhccCCHHHHHHHHHHH------
Q 001911 740 YAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK--GCYPNVVTYT--AMI----DGFGKVGKVDKCLELLRQM------ 805 (997)
Q Consensus 740 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~--~li----~~~~~~g~~~~A~~l~~~m------ 805 (997)
+..|......-+..-...++.++|+.....+... ..++-..+.. .+. ......++..+|.+...++
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 1223222222233333456777776655554421 0000000000 000 0000001111111111111
Q ss_pred -----------HhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHH
Q 001911 806 -----------SSKGCAP--N------FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVS 866 (997)
Q Consensus 806 -----------~~~g~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a 866 (997)
...-..| + ...|......+.+.++.++|...+.+....
T Consensus 623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~----------------------- 679 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI----------------------- 679 (799)
T ss_pred hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----------------------
Confidence 1101111 1 223444455556666666666665555432
Q ss_pred HHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHH--HHH
Q 001911 867 LGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFE--LYV 943 (997)
Q Consensus 867 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~ 943 (997)
.|- ...|+..+..+...|++++|.+.|..+...+|+ ...+...++.++...|+..-|.. ++.
T Consensus 680 ------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~---hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 680 ------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD---HVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred ------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 232 346788889999999999999999999999987 77788889999999998777777 999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 944 DMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 944 ~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
.+++ +.|+ +++|+.|+.+..+.|+.++|.+-|....+..
T Consensus 745 dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 745 DALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999 6785 8999999999999999999999998876543
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.3e-11 Score=124.11 Aligned_cols=406 Identities=15% Similarity=0.124 Sum_probs=260.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 001911 455 VQCLCGAGKYEKAYNVIREMMSKGFIPD-TSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPD-VYTYTILIDNFCKAG 532 (997)
Q Consensus 455 ~~~~~~~g~~~~A~~ll~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g 532 (997)
..-+.++|++++|++.+.+.++. .|| ...|.....+|...|++++..+-.....+. .|+ +..+..-..++-..|
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhc
Confidence 34467899999999999999986 577 777888888999999999999988888876 344 456666677777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH--------HHHh-C--CCCCCHHHHHHHHHHHHH-
Q 001911 533 LIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFE--------TMLS-K--GCIPNIVTFTALIDGHCK- 600 (997)
Q Consensus 533 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~--------~m~~-~--g~~~~~~~~~~li~~~~~- 600 (997)
++++|+.=. |-..++.+|....-...+.+++. +-.. . .+.|+.....+....+-.
T Consensus 198 ~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 198 KFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred cHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 888876321 22222222222222222222222 1111 1 123444333333222211
Q ss_pred -------cCC-----HHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCce---------eHHHHHH--HHHhcCChHH
Q 001911 601 -------AGD-----IERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVY---------TYGALID--GLCKVHKVRE 657 (997)
Q Consensus 601 -------~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~li~--~~~~~g~~~~ 657 (997)
.++ ..++.+.+..-...+.....+............++.- .-..++. .+.-.|+.-.
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 000 1112221111111110000000000000000111111 1111222 3345789999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 658 AHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLE 737 (997)
Q Consensus 658 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 737 (997)
|..-|+..+.....++. .|--+...|....+.++....|.+..+.++. +..+|..-...++-.+++++|..-|++.+.
T Consensus 345 a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999987643333 3777778899999999999999999998866 667787778888888999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH-H
Q 001911 738 DSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFV-T 816 (997)
Q Consensus 738 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~ 816 (997)
.. +-++..|-.+..+.-+.++++++...|++.+.+ ++--+..|+.....+...+++++|++.|+...+. .|... +
T Consensus 423 L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~ 498 (606)
T KOG0547|consen 423 LD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLI 498 (606)
T ss_pred cC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccc
Confidence 64 345677777777888899999999999999987 6657788999999999999999999999999875 45421 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh-hhHHHHHHHHHhc
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV-PAYRILIDHYIKA 895 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 895 (997)
+... .- -+.+|.-+++ +.+++..|.+++....+-+ |.. .+|..|+..-.+.
T Consensus 499 ~v~~-~p-----lV~Ka~l~~q--------------------wk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 499 IVNA-AP-----LVHKALLVLQ--------------------WKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQR 550 (606)
T ss_pred cccc-hh-----hhhhhHhhhc--------------------hhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHH
Confidence 1100 00 1123333332 1245677888888887554 553 3788999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q 001911 896 GRLEVALELHEEMTSF 911 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~ 911 (997)
|+.++|+++|++....
T Consensus 551 ~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 551 GKIDEAIELFEKSAQL 566 (606)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999998764
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.1e-10 Score=119.60 Aligned_cols=291 Identities=13% Similarity=0.113 Sum_probs=220.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCC
Q 001911 647 DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN--PNVYTYGSLIDRLFKDKR 724 (997)
Q Consensus 647 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~ 724 (997)
.++-...+.+++..-.......|++.+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-.-....+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 345555577788888888888887766666666666677788999999999999987431 256677666533222111
Q ss_pred H-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001911 725 L-DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLR 803 (997)
Q Consensus 725 ~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 803 (997)
+ -.|..+++- . +--+.|..++.+-|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|++-++
T Consensus 315 Ls~LA~~v~~i---d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSNI---D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHh---c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1 122222211 1 223456777888888889999999999999886433 45677777888999999999999999
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh
Q 001911 804 QMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV 882 (997)
Q Consensus 804 ~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 882 (997)
+.++- .| |...|..|..+|...+...=|+-+|++..+.. +.|.
T Consensus 389 rAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k----------------------------------PnDs 432 (559)
T KOG1155|consen 389 RAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK----------------------------------PNDS 432 (559)
T ss_pred HHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC----------------------------------CCch
Confidence 99985 56 88999999999999999999999999887642 2345
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-HHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD-----GSPE-LST 956 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~ 956 (997)
-.|..|+.+|.+.++.++|+..|+++...+. .+..++..|+..|.+.++.++|...|++-++.. ..|+ ..+
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~d---te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGD---TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKA 509 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 5899999999999999999999999987642 367889999999999999999999999987732 3343 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..-|+.-+.+.+++++|..+....+.
T Consensus 510 ~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 510 RLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 66789999999999999888776654
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.5e-09 Score=111.54 Aligned_cols=373 Identities=13% Similarity=0.057 Sum_probs=262.3
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HH
Q 001911 478 GFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNV--VT 555 (997)
Q Consensus 478 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~ 555 (997)
+...|...+-...-.+-+.|....|++.|......- +-.-.+|.-|... .-+.+.+.. +... ...|. ..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~~~~----l~~~-l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEILSI----LVVG-LPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHHHHH----HHhc-CcccchHHH
Confidence 344555555444555667788999999998877642 2233344333332 222332222 2211 11121 11
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCC
Q 001911 556 YTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCK 635 (997)
Q Consensus 556 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (997)
--.+..++-.....+++.+-.+.+...|++.+...-+....+.....++++|+.+|+++.+...- -
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY--------------R 295 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY--------------R 295 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC--------------c
Confidence 12345566666788899999999999887777766666667778899999999999999876421 1
Q ss_pred CCCceeHHHHHHHHHhcCChHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 001911 636 EPNVYTYGALIDGLCKVHKVREAHDLLDA-MSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGS 714 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 714 (997)
-.|..+|+.++ |++..+-. +..+-+ ....+ +--+.|...+.+-|.-.++.++|...|++.++.++. ....|+.
T Consensus 296 l~dmdlySN~L--Yv~~~~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTL 369 (559)
T KOG1155|consen 296 LDDMDLYSNVL--YVKNDKSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTL 369 (559)
T ss_pred chhHHHHhHHH--HHHhhhHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHH
Confidence 22344555444 33332221 111111 11111 233456778888889999999999999999998765 6778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 001911 715 LIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK 794 (997)
Q Consensus 715 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 794 (997)
+.+-|...++...|++-++..++-. +.|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNR 447 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhcc
Confidence 9999999999999999999999864 6788999999999999999999999999999863 3388999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhc
Q 001911 795 VDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMG 874 (997)
Q Consensus 795 ~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 874 (997)
.++|++-|++...-| ..+...+..|.+.|.+.++.++|..++++-.+.. ...
T Consensus 448 ~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~---------------------------~~e 499 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS---------------------------ELE 499 (559)
T ss_pred HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---------------------------Hhh
Confidence 999999999999875 3466889999999999999999999998865521 000
Q ss_pred cCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 875 KTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 875 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
....| ...+...|+..+.+.+++++|.........
T Consensus 500 -g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 500 -GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred -cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 01122 233444577888888999888876666554
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=7.4e-09 Score=106.49 Aligned_cols=455 Identities=15% Similarity=0.101 Sum_probs=325.1
Q ss_pred HHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 429 FELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDT-STYSKVIGYLCDASEAEKAFLLFQ 507 (997)
Q Consensus 429 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~ 507 (997)
+..|..+|+..++.+ .-+...+..++.+=.++..+..|..++++.+.. -|-+ ..|-..+.+--..|++..|.++|+
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 455667777777655 345556667777778999999999999999876 2332 345556656667799999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CC-C
Q 001911 508 EMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSK-GC-I 585 (997)
Q Consensus 508 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~-~ 585 (997)
.-.+. .|+...|.+.|+.-.+-+.++.|..+++..+-. .|++.+|--...-=.+.|+...|..+|+...+. |- .
T Consensus 166 rW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 166 RWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 98765 799999999999999999999999999998864 589999988888888899999999999988764 10 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCC---hHHHHH--
Q 001911 586 PNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHK---VREAHD-- 660 (997)
Q Consensus 586 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~-- 660 (997)
-+...+.+....-.++..++.|.-+|+-....-..+. ....|..+...=-+-|+ ++++.-
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r---------------aeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR---------------AEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 1223344444444567788889989888776531111 12233333332223343 333321
Q ss_pred ---HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------hHHHHHHHH---HhcCCHHHH
Q 001911 661 ---LLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVY------TYGSLIDRL---FKDKRLDLA 728 (997)
Q Consensus 661 ---~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~---~~~g~~~~A 728 (997)
-++.+...+ +.|..+|--.++.-...|+.+...++|++++..-++.... .|.-+=-++ ....+.+.+
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 234445444 6678888888888888999999999999999864322211 121111112 356889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001911 729 LKVISKMLEDSYAPNVVIYTEMIDGL----IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQ 804 (997)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 804 (997)
.++|+..++. ++....|+.-+=-+| .++.++..|.+++..++. ..|...+|...|..-.+.+++|.+..+|++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999884 444555665554444 467899999999998874 578889999999999999999999999999
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh
Q 001911 805 MSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP 883 (997)
Q Consensus 805 m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 883 (997)
.++- .| |..+|......=...|+.+.|..+|+-..... .+.....
T Consensus 463 fle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp--------------------------------~ldmpel 508 (677)
T KOG1915|consen 463 FLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQP--------------------------------ALDMPEL 508 (677)
T ss_pred HHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc--------------------------------ccccHHH
Confidence 9997 46 78899998888889999999999998776532 0011122
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLS-----LAR-----------KIDKAFELYVDMIR 947 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 947 (997)
.|..-++.-...|.++.|..+|+++++..+ -..+|..++.--. +.+ ....|..+|+++..
T Consensus 509 lwkaYIdFEi~~~E~ekaR~LYerlL~rt~----h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 509 LWKAYIDFEIEEGEFEKARALYERLLDRTQ----HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHhcc----cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 455666666789999999999999998653 3446666654332 223 45667777777654
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=3.7e-09 Score=108.64 Aligned_cols=450 Identities=15% Similarity=0.092 Sum_probs=276.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001911 481 PDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALI 560 (997)
Q Consensus 481 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 560 (997)
.+...|......-...+++..|..+|+..+.... .+...|-.-+.+-.+...+..|..+++..+..=+..|. .|--.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence 3445555555555567788889999998887653 36777888888888888999999999988875333233 344445
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCce
Q 001911 561 HAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVY 640 (997)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (997)
.+=-..|+...|.++|+.-.+- .|+...|.+.|+.-.+-+.++.|..+|++..- +.|++.
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~------------------~HP~v~ 208 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL------------------VHPKVS 208 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe------------------ecccHH
Confidence 5555678999999999888764 78999999999998899999999999988864 478888
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHH
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVV-GC-EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPN-VYTYGSLID 717 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~ 717 (997)
.|-.....=-+.|+...|..+|....+. |- ..+...+.+...-=.++..++.|.-+|+-.++.-++.. ...|..+..
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 8888888778889988888888877653 10 11223344444444456778888888888887643322 223333332
Q ss_pred HHHhcCC---HHHHH-----HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHH--
Q 001911 718 RLFKDKR---LDLAL-----KVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVV--TYTAM-- 785 (997)
Q Consensus 718 ~~~~~g~---~~~A~-----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l-- 785 (997)
.--+-|+ +++++ --++.++..+ +.|-.+|-..+..-...|+.+...+++++++.. ++|-.. .|...
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHH
Confidence 2222333 33333 2344455443 456777777777777788999999999988875 555221 11111
Q ss_pred --HH-HH---hccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 001911 786 --ID-GF---GKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHC----CASGLLDEAHNLLEEMKQTYWPTHVAGYRK 854 (997)
Q Consensus 786 --i~-~~---~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 854 (997)
|+ ++ ....+.+.+.++|+.+++. .| ...||.-+--.| .++.++..|.+++....... |....++.
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--PK~KlFk~ 442 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--PKDKLFKG 442 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--CchhHHHH
Confidence 11 11 3567888888999988883 55 455555544444 46778888888887765432 23233333
Q ss_pred HHHhHh--HhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc
Q 001911 855 VIEGFS--REFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA 932 (997)
Q Consensus 855 ~~~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 932 (997)
.|..-. +++...-.++++..+-+ +.+..+|...+..-...|+++.|..+|+-+...+. .......|-..+.--...
T Consensus 443 YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~-ldmpellwkaYIdFEi~~ 520 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPA-LDMPELLWKAYIDFEIEE 520 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc-cccHHHHHHHhhhhhhhc
Confidence 322211 23333334444433322 12233455555555555666666666666655432 111222333333333345
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001911 933 RKIDKAFELYVDMIRKDGSPELSTFVHLIK 962 (997)
Q Consensus 933 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 962 (997)
|.++.|..+|+++++ ..+...+|+..+.
T Consensus 521 ~E~ekaR~LYerlL~--rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 521 GEFEKARALYERLLD--RTQHVKVWISFAK 548 (677)
T ss_pred chHHHHHHHHHHHHH--hcccchHHHhHHH
Confidence 666666666666666 3344445555554
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.6e-10 Score=119.11 Aligned_cols=280 Identities=12% Similarity=0.092 Sum_probs=225.0
Q ss_pred CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 001911 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSL 715 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 715 (997)
..+........+-+...+++++..++++.+.+.. ++....+..-|..+...|+..+-..+=.++++.-+. ...+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhH
Confidence 4445555566667778899999999999998876 677777777788999999999988888899988544 77899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccC
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK--GCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g 793 (997)
.--|...|+..+|.+.|.+....+ +.-...|-.....|+-.|..++|...+..+.+. |.. -+..|. .--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYl--gmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYL--GMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHH--HHHHHHhc
Confidence 999999999999999999987543 223467889999999999999999999888764 322 233343 34588899
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHH
Q 001911 794 KVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNE 872 (997)
Q Consensus 794 ~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 872 (997)
+++-|.++|.+.... .| |+...+-+.-.....+.+.+|..+|+..... +..
T Consensus 395 n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~--------------------------ik~ 446 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEV--------------------------IKS 446 (611)
T ss_pred cHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH--------------------------hhh
Confidence 999999999998864 66 6888888888888889999999999886531 111
Q ss_pred hccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 873 MGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 873 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
..+.. .--.++++.|+.+|.+.+++++|+..+++++...|. +..++..++.+|...|+++.|+..|.+.+. +.|
T Consensus 447 ~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k---~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p 520 (611)
T KOG1173|consen 447 VLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK---DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKP 520 (611)
T ss_pred ccccc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC---chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCC
Confidence 11111 113467889999999999999999999999988775 899999999999999999999999999999 889
Q ss_pred CHH
Q 001911 953 ELS 955 (997)
Q Consensus 953 ~~~ 955 (997)
|..
T Consensus 521 ~n~ 523 (611)
T KOG1173|consen 521 DNI 523 (611)
T ss_pred ccH
Confidence 853
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=8.9e-14 Score=146.91 Aligned_cols=261 Identities=21% Similarity=0.220 Sum_probs=114.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 001911 644 ALIDGLCKVHKVREAHDLLDAMSVVG-CEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKD 722 (997)
Q Consensus 644 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 722 (997)
.+...+.+.|++++|.+++++..... .+.|...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55778889999999999996654433 2445555666677777889999999999999988654 56667777776 789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 001911 723 KRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKG-CYPNVVTYTAMIDGFGKVGKVDKCLEL 801 (997)
Q Consensus 723 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l 801 (997)
+++++|.++++...+. .++...+..++..+.+.|+++++.++++++.+.. .+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887765 3566778888899999999999999999987642 356788888899999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC
Q 001911 802 LRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP 880 (997)
Q Consensus 802 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 880 (997)
+++.++. .| |......++..+...|+.+++..+++...+.. +.
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~----------------------------------~~ 212 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA----------------------------------PD 212 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----------------------------------HT
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC----------------------------------cC
Confidence 9999997 57 57788899999999999999999998876532 13
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+...+..++.+|...|+.++|+..++++.+..|. |+.....++.++...|+.++|..++.++.+
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~---d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD---DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence 3345678999999999999999999999988775 899999999999999999999999998865
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=4.4e-11 Score=132.24 Aligned_cols=282 Identities=12% Similarity=0.056 Sum_probs=216.2
Q ss_pred cCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH-
Q 001911 601 AGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGAL-IDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYD- 678 (997)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~- 678 (997)
.|++++|.+.+....+. .++...+..+ .....+.|+++.|.+.+.++.+. .|+...+.
T Consensus 97 eGd~~~A~k~l~~~~~~------------------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~ 156 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH------------------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVE 156 (398)
T ss_pred CCCHHHHHHHHHHHHhc------------------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHH
Confidence 68999999877765442 1222233333 34447899999999999999875 45543322
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHH
Q 001911 679 -ALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNV-------VIYTEM 750 (997)
Q Consensus 679 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l 750 (997)
.....+...|+++.|...++++.+..+. +...+..+...|.+.|++++|.+++..+.+.+..++. ..|..+
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3467888999999999999999998755 6778889999999999999999999999987644222 123333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001911 751 IDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLL 830 (997)
Q Consensus 751 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 830 (997)
+.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+.+++..+. .|+... .++.+....++.
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~ 310 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNP 310 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCCh
Confidence 44334445556666666666443 3457888899999999999999999999999985 555532 234444566999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 001911 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEVALELHEEMT 909 (997)
Q Consensus 831 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 909 (997)
+++.+.+++..+.+ |+.+ .+..++..+.+.|+|++|.+.|+.+.
T Consensus 311 ~~al~~~e~~lk~~-----------------------------------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 311 EQLEKVLRQQIKQH-----------------------------------GDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHHhhC-----------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999988754 5544 57789999999999999999999999
Q ss_pred cCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 910 SFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 910 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+..| +...+..++.++.+.|+.++|..+|++.+.
T Consensus 356 ~~~P----~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 356 KQRP----DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8764 677788899999999999999999999876
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=2.5e-09 Score=105.77 Aligned_cols=459 Identities=15% Similarity=0.131 Sum_probs=273.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh--CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 001911 274 GCFAYSLCKAGRWKEALELIEK--EEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKR 351 (997)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 351 (997)
.++..++.+.|++++|...++- ....++...|.-|.-++.-.|.+.+|..+..+.. .+......+.+...+.+
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhC
Confidence 3444444455555555544432 1223444555555555555566666655544332 22333444445555667
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHH
Q 001911 352 QLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFEL 431 (997)
Q Consensus 352 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 431 (997)
+-++-..+++.+.+. ..-.-+|..+....-.+++|.++|.++... .|+....|.-+.
T Consensus 136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~A---------------- 192 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMA---------------- 192 (557)
T ss_pred cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHH----------------
Confidence 766666666665432 233445666666667789999999998864 355555554443
Q ss_pred HHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 432 AEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKR 511 (997)
Q Consensus 432 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 511 (997)
.||.+..-++-+.+++...++. ++.++...|.......+.=+-..|.+-..++..
T Consensus 193 ------------------------LCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad 247 (557)
T KOG3785|consen 193 ------------------------LCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELAD 247 (557)
T ss_pred ------------------------HHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh
Confidence 3467888888899999888776 233344455544444443222334444444444
Q ss_pred CCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 001911 512 NGLIPDVYTYTILIDNFCKA-----GLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIP 586 (997)
Q Consensus 512 ~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~ 586 (997)
.+-.. -..+.-+++. ..-+.|++++-.+.+. .|. .--.|+.-|.+.++..+|..+.+++. +.
T Consensus 248 N~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~----Pt 314 (557)
T KOG3785|consen 248 NIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLD----PT 314 (557)
T ss_pred ccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcC----CC
Confidence 32211 1123334443 3457888888877764 222 33446677889999999999887764 22
Q ss_pred CHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHH
Q 001911 587 NIVTFTALIDGHCKAG-------DIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAH 659 (997)
Q Consensus 587 ~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 659 (997)
++.-|..-.-.+...| .+.-|.+.|+-.-++.. ...++.--.++...+.-..++++++
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~---------------ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL---------------ECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc---------------ccccccchHHHHHHHHHHHHHHHHH
Confidence 3333322222222322 34556666665543321 1223334556677777788899999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001911 660 DLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTY-GSLIDRLFKDKRLDLALKVISKMLED 738 (997)
Q Consensus 660 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~ 738 (997)
-.++.+...-...|...+| +..+++..|++.+|+++|-......++ +..+| ..|.++|.+.++++.|..++-++-.
T Consensus 380 ~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t- 456 (557)
T KOG3785|consen 380 TYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT- 456 (557)
T ss_pred HHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC-
Confidence 9999888765455555554 788999999999999999888776666 44555 5667889999999999887765532
Q ss_pred CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHH
Q 001911 739 SYAPNVVI-YTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVT 816 (997)
Q Consensus 739 ~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~ 816 (997)
+.+..+ ...+.+-|-+.+.+=-|-+.|+.+... .|++.-|. |+--....+|+.+....-.| -..+
T Consensus 457 --~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~~ 523 (557)
T KOG3785|consen 457 --PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAGLFRQLANHKTDPIPISQ 523 (557)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHHHHHHHHcCCCCCCchhH
Confidence 233433 334456777889998999999988775 56665553 33334456677666543333 2344
Q ss_pred HHHHHHHHHhcCC
Q 001911 817 YRVLINHCCASGL 829 (997)
Q Consensus 817 ~~~l~~~~~~~g~ 829 (997)
..-++..+...++
T Consensus 524 ~rEVvhllr~~~n 536 (557)
T KOG3785|consen 524 MREVVHLLRMKPN 536 (557)
T ss_pred HHHHHHHHHhCCC
Confidence 5555555554443
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=8.5e-11 Score=130.79 Aligned_cols=288 Identities=13% Similarity=0.064 Sum_probs=210.8
Q ss_pred HHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCc-eeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 001911 599 CKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNV-YTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVY 677 (997)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 677 (997)
...|+++.|.+.+.+..+. .|+. ..+-.........|+++.|.+.+.+..+....+.....
T Consensus 95 ~~~g~~~~A~~~l~~~~~~------------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~ 156 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH------------------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE 156 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH
Confidence 4679999999999887653 3433 33444456778889999999999998765422222344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH---H
Q 001911 678 DALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYT-EMID---G 753 (997)
Q Consensus 678 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~---~ 753 (997)
-.....+...|+++.|...++.+.+..+. +..++..+...+...|++++|.+.+..+.+.+.. +...+. .-.. +
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 44577888999999999999999999755 6678889999999999999999999999988643 333332 1111 2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhc
Q 001911 754 LIKVGKTEEAYKVMLMMEEKGC---YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVT---YRVLINHCCAS 827 (997)
Q Consensus 754 ~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~l~~~~~~~ 827 (997)
+...+..+++.+.+..+.+... +.++..+..++..+...|+.++|.+.+++..++ .||... ...........
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCC
Confidence 2333333444445555554422 137888999999999999999999999999997 455432 12222233445
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh---hHHHHHHHHHhcCCHHHHHHH
Q 001911 828 GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP---AYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 828 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~ 904 (997)
++.+.+.+.+++..+.. |+.+ ....++..+.+.|++++|.+.
T Consensus 313 ~~~~~~~~~~e~~lk~~-----------------------------------p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNV-----------------------------------DDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred CChHHHHHHHHHHHHhC-----------------------------------CCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 77888888887776542 4443 456899999999999999999
Q ss_pred HHH--HhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 905 HEE--MTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 905 ~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
|++ +.+..| +...+..++..+.+.|+.++|.++|++...
T Consensus 358 le~a~a~~~~p----~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 358 FKNVAACKEQL----DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhHHhhcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 994 555544 666677999999999999999999999755
No 55
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.2e-07 Score=106.03 Aligned_cols=549 Identities=17% Similarity=0.197 Sum_probs=319.4
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----------CCCCCCchhHHHHH
Q 001911 209 KCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLD-----------AGFSMDGFTLGCFA 277 (997)
Q Consensus 209 ~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----------~g~~~~~~~~~~li 277 (997)
.|.-.-.+++++++++.|...+++.|..++..+..-|+..=..+.-.++|+.... -++..|+.+..-.|
T Consensus 652 ~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYI 731 (1666)
T KOG0985|consen 652 NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYI 731 (1666)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHH
Confidence 3444566778888888888888888877776666666654444545555554432 13566778888899
Q ss_pred HHHHhcCCHHHHHHHHHhC------------------------------CCCCCHHHHH------HHHHHHHccCChHHH
Q 001911 278 YSLCKAGRWKEALELIEKE------------------------------EFVPDTVLYT------KMISGLCEASLFEEA 321 (997)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~------------------------------~~~p~~~~~~------~li~~~~~~g~~~~A 321 (997)
.+-|+.|++.|..++.++. ++.+|.+.|- ..|..|.+.=++...
T Consensus 732 qAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~ 811 (1666)
T KOG0985|consen 732 QAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRT 811 (1666)
T ss_pred HHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCccc
Confidence 9999999999998875542 1233333321 234555555444444
Q ss_pred HHHHHHHHhCCCCCcHH-----------hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 322 MDLLNRMRARSCIPNVV-----------TFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSY 390 (997)
Q Consensus 322 ~~~~~~m~~~~~~p~~~-----------t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 390 (997)
-.+...+..-.|.-+.+ .-.-+..-+-+.+++.--...++..+..| ..++.++|+|...|...++-.+
T Consensus 812 p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE 890 (1666)
T KOG0985|consen 812 PQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE 890 (1666)
T ss_pred chhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH
Confidence 44444443333322211 01112222334445555556677777777 3467778877777665443222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCC------------------------------------CCchHHHHHH-
Q 001911 391 AYKLLSKMRKCGFQPGYVVYNILIGGICGNEDL------------------------------------PASDVFELAE- 433 (997)
Q Consensus 391 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~------------------------------------~~~~~~~~a~- 433 (997)
-. + + -|...-+..++-||..++- ...++|++.+
T Consensus 891 ~f--L----k----eN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~ 960 (1666)
T KOG0985|consen 891 RF--L----K----ENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN 960 (1666)
T ss_pred Hh--c----c----cCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh
Confidence 11 0 0 0111111122222222110 0112233322
Q ss_pred -------HHHHHHHHcCcc--ccccchhHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHH
Q 001911 434 -------KAYAEMLNAGVV--LNKINVSNFVQCLCGAGKYEKAYNVIREMMSKG--FIPDTSTYSKVIGYLCDASEAEKA 502 (997)
Q Consensus 434 -------~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A 502 (997)
.+.++....+++ .|+..++..+.++...+-..+-++++++++-.. +..+...-+.||-...+. +....
T Consensus 961 e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trV 1039 (1666)
T KOG0985|consen 961 EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRV 1039 (1666)
T ss_pred ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHH
Confidence 334444444332 345556666777777777777777777776432 111222233344333332 33444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001911 503 FLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSK 582 (997)
Q Consensus 503 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 582 (997)
.+..+++...+. |+ +.......+-+++|..+|+..- .+....+.|+.- -+..+.|.+.-++.
T Consensus 1040 m~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~--- 1101 (1666)
T KOG0985|consen 1040 MEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC--- 1101 (1666)
T ss_pred HHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh---
Confidence 455554443321 11 2334445666778887777653 244444444432 35666666665553
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHH
Q 001911 583 GCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLL 662 (997)
Q Consensus 583 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 662 (997)
..+..|+.+..+-.+.|...+|++-|-+. .|+..|.-.++...+.|.+++-.+.+
T Consensus 1102 ---n~p~vWsqlakAQL~~~~v~dAieSyika----------------------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1102 ---NEPAVWSQLAKAQLQGGLVKDAIESYIKA----------------------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred ---CChHHHHHHHHHHHhcCchHHHHHHHHhc----------------------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 24566788888888888888887766543 45556788888888888888888887
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001911 663 DAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAP 742 (997)
Q Consensus 663 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 742 (997)
....+..-.|... +.||-+|++.++..+-.++. .-|+......+.+-|...+.++.|.-+|..
T Consensus 1157 ~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-------- 1219 (1666)
T KOG0985|consen 1157 LMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN-------- 1219 (1666)
T ss_pred HHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------
Confidence 7776655455443 46778888888877655543 236777777788888888888888777754
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
+..|..|...+...|.+..|...-+++. +..||..+-.+|...+.+.-| +|.-..+.....-..-++.
T Consensus 1220 -vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~ 1287 (1666)
T KOG0985|consen 1220 -VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIE 1287 (1666)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHH
Confidence 3356667777777788888877666543 567888888888776655433 3333333345666777888
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 001911 823 HCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~ 841 (997)
-|...|-++|-+.+++...
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhh
Confidence 8888888888888887654
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=3.9e-09 Score=113.22 Aligned_cols=456 Identities=18% Similarity=0.168 Sum_probs=307.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001911 460 GAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARN 539 (997)
Q Consensus 460 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 539 (997)
..+++...+++.+.++.. .+-...|.....-.++..|+-++|.+..+......+. +.++|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 568999999999998874 3333345555555567789999999999988876654 78899999888888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 001911 540 WFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAE 619 (997)
Q Consensus 540 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 619 (997)
.|......+.. |...|.-+...-++.|+++.......++.+.. +.....|..+..++.-.|+...|..+.+...+...
T Consensus 97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999987654 77888888777888899988888888877653 34556788888888889999999999999877542
Q ss_pred CCchhHHHHHhccCCCCCCceeHHHHH------HHHHhcCChHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHH
Q 001911 620 ISDVDIYFRVLDNNCKEPNVYTYGALI------DGLCKVHKVREAHDLLDAMSVVGCEPNNIV-YDALIDGFCKVGKLDE 692 (997)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~ 692 (997)
..|+...+.... ....+.|..++|.+.+..-... ..|... -.+-...+.+.+++++
T Consensus 175 ---------------~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 175 ---------------TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred ---------------cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHh
Confidence 134444433322 2456678888888888766432 223222 3345667788999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHH-HHHHhcCCHHHHH-HHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001911 693 AQMVFSKMLEHGCNPNVYTYGSLI-DRLFKDKRLDLAL-KVISKMLEDSY---APNVVIYTEMIDGLIKVGKTEEAYKVM 767 (997)
Q Consensus 693 A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~-~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 767 (997)
|..++..++..+ ||...|.... .++.+-.+.-+++ .+|....+.-. .|-....+ ......-.+..-+++
T Consensus 238 A~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls----vl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 238 AVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS----VLNGEELKEIVDKYL 311 (700)
T ss_pred HHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH----HhCcchhHHHHHHHH
Confidence 999999999984 6666665544 4444344444444 66666554311 11111111 111122334456677
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh----CCC----------CCC--HHHHHHHHHHHHhcCCHH
Q 001911 768 LMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSS----KGC----------APN--FVTYRVLINHCCASGLLD 831 (997)
Q Consensus 768 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~----------~p~--~~~~~~l~~~~~~~g~~~ 831 (997)
..+.++|+++- +..+...|-.-...+=-.++.-.+.. .|. .|. ..|+..++..+-+.|+++
T Consensus 312 ~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 312 RPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 78888887753 33444334322222211111111111 111 343 345667888899999999
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 832 EAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV-PAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 832 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
.|..+++...+- .|+. ..|..-+.++...|++++|..+++++.+
T Consensus 389 ~A~~yId~AIdH-----------------------------------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 389 VALEYIDLAIDH-----------------------------------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred HHHHHHHHHhcc-----------------------------------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 999999987642 4653 4677788999999999999999999998
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--C---H-HHHHHH--HHHHHhcCCHHHHHHHHHHhhc
Q 001911 911 FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP--E---L-STFVHL--IKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 911 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~---~-~~~~~l--~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.+- +|..+=..-+.=..++++.++|.++..+..+.|... + . -.|+.+ +.+|.++|+|-+|++=+..+-.
T Consensus 434 lD~---aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 434 LDT---ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred ccc---hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 752 132222233333456899999999999999877422 1 1 245544 6789999999999887766544
Q ss_pred c
Q 001911 983 T 983 (997)
Q Consensus 983 ~ 983 (997)
.
T Consensus 511 ~ 511 (700)
T KOG1156|consen 511 H 511 (700)
T ss_pred H
Confidence 3
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.7e-09 Score=114.07 Aligned_cols=284 Identities=12% Similarity=0.024 Sum_probs=216.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 516 PDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALI 595 (997)
Q Consensus 516 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 595 (997)
-+......-.+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.+|.+.- +....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 355566666677778889999999999988764 3456666666778888888888777777777653 55677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 001911 596 DGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNI 675 (997)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 675 (997)
--|...|+.++|.+.|.+..... +.-...|-.+...|+-.|..++|...+....+.= +-...
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-----------------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hl 381 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-----------------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHL 381 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-----------------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcc
Confidence 88888899999999998886543 2234578888889999999999998888775521 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHH
Q 001911 676 VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLED------SYAPNVVIYTE 749 (997)
Q Consensus 676 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~ 749 (997)
-+--+.--|.+.++.+.|.++|.+.....+. |+..++-+.-.....+.+.+|..+|+..+.. .......+++.
T Consensus 382 P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 382 PSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 1223444577889999999999998887544 7778888877778888999999999887632 11124567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 750 MIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINH 823 (997)
Q Consensus 750 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~ 823 (997)
|...|.+.+++++|+..+++...... -+..++.++.-.|...|+++.|++.|.+.+.. .|+..+...++..
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHH
Confidence 99999999999999999999988743 38889999988899999999999999998864 7887666666653
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=7e-08 Score=103.84 Aligned_cols=438 Identities=15% Similarity=0.142 Sum_probs=240.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh--CCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 001911 249 DRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK--EEFVPDTVLYTKMISGLCEASLFEEAMDLLN 326 (997)
Q Consensus 249 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 326 (997)
+.+..+....+.+++ +.+....+.....-.++..|+-++|...... .....+-+.|.++.-.+-...++++|+..|.
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 334444444444444 2233333333333344555566666555443 1223467788888888888889999999999
Q ss_pred HHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC
Q 001911 327 RMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCG-FQP 405 (997)
Q Consensus 327 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 405 (997)
.....+ +.|...+.-+--.-.+.|+++..........+.. +.....|..++.++.-.|++..|..+++...+.- -.|
T Consensus 100 nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 100 NALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 888764 4455555555444567788887777777776653 3346678888888999999999999999987643 235
Q ss_pred CHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh
Q 001911 406 GYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTST 485 (997)
Q Consensus 406 ~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~ 485 (997)
+...|.-...-+. -...+.+.|.+++|++.+..-... ..|-..
T Consensus 178 s~~~~e~se~~Ly-----------------------------------~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla 220 (700)
T KOG1156|consen 178 SKEDYEHSELLLY-----------------------------------QNQILIEAGSLQKALEHLLDNEKQ--IVDKLA 220 (700)
T ss_pred CHHHHHHHHHHHH-----------------------------------HHHHHHHcccHHHHHHHHHhhhhH--HHHHHH
Confidence 5555544332221 112245678888888888766443 223332
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 486 Y-SKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYT-ILIDNFCKAGLIEQAR-NWFDEMVKEGCDPNVVTYTALIHA 562 (997)
Q Consensus 486 ~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~ll~~ 562 (997)
+ ..-...+.+.+++++|..++..++.. .||...|. .+..++.+-.+.-++. .+|....+.-.. ....-..-+..
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsv 297 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSV 297 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHH
Confidence 2 33445677889999999999999987 45555544 4455554444444555 666666554111 11111111111
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--CCchhHHHHHhccCCCCCCce
Q 001911 563 YLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAE--ISDVDIYFRVLDNNCKEPNVY 640 (997)
Q Consensus 563 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 640 (997)
.-...-.+...+++..+.+.|+++-... +...|-... +.. +++++...-. .+...++....+...-+|...
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~---k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttl 370 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKDPE---KVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTL 370 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhchh---HhH-HHHHHHHHHHhhcccccCCCcccccccCCchHH
Confidence 1122334455667778888886653333 333332211 111 2222211000 000000000000011244443
Q ss_pred eHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 001911 641 TYG--ALIDGLCKVHKVREAHDLLDAMSVVGCEPNN-IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLID 717 (997)
Q Consensus 641 ~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 717 (997)
.|+ -++..|-+.|+++.|...++..+.+ .|+. ..|..=.+.+...|++++|..++++..+.+ .+|...-.--..
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAK 447 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHH
Confidence 333 3445566667777777777766644 3442 233344456666677777777777766654 234444334455
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 001911 718 RLFKDKRLDLALKVISKMLEDS 739 (997)
Q Consensus 718 ~~~~~g~~~~A~~~~~~~~~~~ 739 (997)
-..+.++.++|.++.....+.|
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHccccHHHHHHHHHhhhcc
Confidence 5556666666666666665554
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.1e-09 Score=111.19 Aligned_cols=285 Identities=14% Similarity=0.124 Sum_probs=224.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 001911 652 VHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKV 731 (997)
Q Consensus 652 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 731 (997)
.|++.+|+++..+-.+.+ +-....|..-..+--+.|+.+.+-.++.++.+.-..++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 699999999999988776 3445566667777888999999999999999985566777888888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHH
Q 001911 732 ISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNV-------VTYTAMIDGFGKVGKVDKCLELLRQ 804 (997)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~ 804 (997)
.+++.+.+ +.+.........+|.+.|++.+...++.++.+.|.--+. .+|+.++.-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99999876 556778899999999999999999999999998876453 3677777666666666665566766
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhh
Q 001911 805 MSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPA 884 (997)
Q Consensus 805 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 884 (997)
...+ .+-+...-.+++.-+...|+.++|.++.++..+..|.+.+.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---------------------------------- 299 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---------------------------------- 299 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----------------------------------
Confidence 6554 34467777888889999999999999999988776533211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGL 964 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y 964 (997)
....+.+-++.+.=++..++..+..|+ ++..+.+|+..|.+.+.|.+|...++.+++ ..|+.+.|..+++++
T Consensus 300 ---~~~~~l~~~d~~~l~k~~e~~l~~h~~---~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~ 371 (400)
T COG3071 300 ---RLIPRLRPGDPEPLIKAAEKWLKQHPE---DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADAL 371 (400)
T ss_pred ---HHHhhcCCCCchHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHH
Confidence 112233456666667777777766554 667888888888888888888888888888 678888888888888
Q ss_pred HhcCCHHHHHHHHHHhh
Q 001911 965 IRVNKWEEALQLSYSIC 981 (997)
Q Consensus 965 ~~~g~~~eA~~~~~~~~ 981 (997)
-+.|+.++|.+..+..+
T Consensus 372 ~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 372 DQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHcCChHHHHHHHHHHH
Confidence 88888888888877655
No 60
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=5.3e-11 Score=128.12 Aligned_cols=284 Identities=15% Similarity=0.111 Sum_probs=184.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHH
Q 001911 498 EAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGC--DPNVVTYTALIHAYLKARKPSQANEL 575 (997)
Q Consensus 498 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~ 575 (997)
+..+|...|..+...- .-...+...+..+|...+++++|.++|+.+.+..+ .-+...|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 3466777777744432 22346666777778888888888888887776532 12556666665543221 11222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCC
Q 001911 576 F-ETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHK 654 (997)
Q Consensus 576 ~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 654 (997)
+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+.. +....+|+.+..-+.....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-----------------p~faYayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-----------------PRFAYAYTLLGHESIATEE 470 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-----------------CccchhhhhcCChhhhhHH
Confidence 2 2222222 4566788888888888888888888888877642 3366777777777777778
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 655 VREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISK 734 (997)
Q Consensus 655 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 734 (997)
+|.|...|+..+... +.+..+|.-+.-.|.+.++++.|+-.|+++.+.++. +.+....+...+.+.|+.++|++++++
T Consensus 471 ~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred HHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 888888888776443 233445555667777888888888888888777654 555556666677777888888888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 001911 735 MLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK 808 (997)
Q Consensus 735 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 808 (997)
+...+. .|+..--..+..+...++.++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|--+.+.
T Consensus 549 A~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 549 AIHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 776542 34433334455566677778888888777774 2224455666667777777777777777777664
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=4.3e-10 Score=110.20 Aligned_cols=257 Identities=16% Similarity=0.176 Sum_probs=125.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHH
Q 001911 566 ARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGAL 645 (997)
Q Consensus 566 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 645 (997)
++++++|.++|-+|.+.. +.+..+-.+|.+.|.+.|..|.|+++.+.+..+.... ........-.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT-------------~~qr~lAl~qL 113 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT-------------FEQRLLALQQL 113 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc-------------hHHHHHHHHHH
Confidence 345555555555555432 2233344455555555566666666655554421100 00011122334
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHh
Q 001911 646 IDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVY----TYGSLIDRLFK 721 (997)
Q Consensus 646 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~ 721 (997)
..-|...|-++.|.++|..+...+ .--......|+..|-...+|++|+++-+++.+.+..+... .|-.+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 444555566666666666655433 2233445556666666666666666666666554433221 23334444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 001911 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLEL 801 (997)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 801 (997)
..+.+.|..++.+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++...+
T Consensus 193 ~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 555666666666655543 1222223334455555666666666666665553333334455555566666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 802 LRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEM 840 (997)
Q Consensus 802 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 840 (997)
+.++.+. .++...-..+...-....-.+.|..++.+-
T Consensus 272 L~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 272 LRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred HHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 6665554 233333333333333333344444444433
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=7.9e-08 Score=105.59 Aligned_cols=479 Identities=13% Similarity=0.054 Sum_probs=294.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 460 GAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGY---LCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQ 536 (997)
Q Consensus 460 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 536 (997)
..+..++++.-+.....++...+..++..+..+ |...++.+++ ++-........|....+.+.+.-
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl--------- 307 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL--------- 307 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH---------
Confidence 456677888888887777777777776665543 3445666666 33333333333332222222111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 537 ARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 537 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
+-.+.++....+.-|...|..+.-+....|+++.+.+.|++.... .......|..+...+...|.-..|..+++....
T Consensus 308 -m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 308 -MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred -HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 112222222233457788888888999999999999999998753 344567788888899999999999999988765
Q ss_pred ccCCCchhHHHHHhccCCCCCCceeHHHHHH-HH-HhcCChHHHHHHHHHHHhc--CC--CCCHHHHHHHHHHHHhc---
Q 001911 617 NAEISDVDIYFRVLDNNCKEPNVYTYGALID-GL-CKVHKVREAHDLLDAMSVV--GC--EPNNIVYDALIDGFCKV--- 687 (997)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~-~~-~~~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~li~~~~~~--- 687 (997)
..+ .|+..+--.++. .| -+.+.+++++++-.+.... +. ......|..+.-+|...
T Consensus 386 ~~~----------------~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 386 KSE----------------QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred ccc----------------CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc
Confidence 421 233333323333 23 3457777777777666551 11 12334444444444322
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001911 688 --------GKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGK 759 (997)
Q Consensus 688 --------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 759 (997)
....++++.+++..+.+.. |+.....+.--|+..++++.|.+...+..+.+-..+...|..|.-.+...++
T Consensus 450 a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 1356778888888887654 3333333444577889999999999999988667788999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001911 760 TEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK-GCAPNFVTYRVLINHCCASGLLDEAHNLLE 838 (997)
Q Consensus 760 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 838 (997)
+.+|+.+.+...+. ..-|......-+..-..-++.++|+.....++.- .-.|... ..|.-........
T Consensus 529 ~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q----------~~~~~g~~~~lk~ 597 (799)
T KOG4162|consen 529 LKEALDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ----------QTLDEGKLLRLKA 597 (799)
T ss_pred hHHHHHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh----------hhhhhhhhhhhhc
Confidence 99999999887754 1112222222233334578888888888777652 0011100 0111111222222
Q ss_pred HHHhc--CCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 839 EMKQT--YWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV--------PAYRILIDHYIKAGRLEVALELHEEM 908 (997)
Q Consensus 839 ~m~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~ 908 (997)
.+.-. .....+.+++.+..-...+.+.+ +.-..+......|.. ..|...++.+.+.++.++|...+.++
T Consensus 598 ~l~la~~q~~~a~s~sr~ls~l~a~~~~~~-~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea 676 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYLSSLVASQLKSA-GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA 676 (799)
T ss_pred ccccCcccccccchhhHHHHHHHHhhhhhc-ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 22110 11111222332211111110000 000001111111221 23556667888999999999999999
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHhhccCC
Q 001911 909 TSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQ--LSYSICHTDI 985 (997)
Q Consensus 909 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~--~~~~~~~~~~ 985 (997)
.+..|. ....|...+..+...|++++|.+.|..+.. +.|+ +.+...|+.+|.+.|+-.-|.+ ++..++..|.
T Consensus 677 ~~~~~l---~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 677 SKIDPL---SASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred Hhcchh---hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 888764 778888888899999999999999999999 8897 7899999999999998776666 7776665543
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=1.1e-09 Score=107.36 Aligned_cols=228 Identities=16% Similarity=0.155 Sum_probs=155.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 001911 594 LIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN 673 (997)
Q Consensus 594 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 673 (997)
|..-|...|-+|.|+.+|..+.+.+ .--......|+..|-+..+|++|.++-+++...+..+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-----------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-----------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-----------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 4445556666666666666665432 11223445566667777777777777776666553333
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001911 674 N----IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTE 749 (997)
Q Consensus 674 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 749 (997)
. ..|.-|...+....+.+.|..++.+..+.+++ .+..-..+.+.....|+++.|.+.++.+.+.+..--..+...
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 2 23556666667778899999999999888654 444555677888899999999999999998764444567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 001911 750 MIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCA--- 826 (997)
Q Consensus 750 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~--- 826 (997)
|..+|.+.|+.++...++.++.+.... ...-..+...-....-.+.|..++.+-+.+ +|+...+..++..-..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g--~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTG--ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAE 330 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCC--ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhcccc
Confidence 899999999999999999998886333 333344444333344455666665555554 6999999988886653
Q ss_pred cCCHHHHHHHHHHHHhc
Q 001911 827 SGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 827 ~g~~~~A~~~~~~m~~~ 843 (997)
.|...+.+..+..|...
T Consensus 331 eg~~k~sL~~lr~mvge 347 (389)
T COG2956 331 EGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccchhhhHHHHHHHHHH
Confidence 45677777788887653
No 64
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=9e-07 Score=99.72 Aligned_cols=196 Identities=9% Similarity=-0.029 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCchhHHHHHH
Q 001911 200 GKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFS-MDGFTLGCFAY 278 (997)
Q Consensus 200 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~ 278 (997)
..+|..|+..|+..-+...|.++|++..+.. ..+......+...+++...+++|..+.-...+.... .-...|--..-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4579999999998889999999999988754 344667778888999999999998883333222110 00111112233
Q ss_pred HHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH--HHHHhcCChh
Q 001911 279 SLCKAGRWKEALELIEK-EEFVP-DTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILL--CGCLRKRQLG 354 (997)
Q Consensus 279 ~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll--~~~~~~g~~~ 354 (997)
.|-..+++..|..-|+. .+..| |...|..+..+|.+.|++..|+++|.+.... .|+.. |...- ...|..|++.
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~-y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSK-YGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhH-HHHHHHHHHHHHhhhHH
Confidence 45667888888888876 44455 7889999999999999999999999988775 45432 22221 2335789999
Q ss_pred HHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001911 355 RCKRVLSMMITEG------CYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMR 399 (997)
Q Consensus 355 ~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (997)
+|...++...... ..--..++-.+...+.-.|-...|.+.++.-+
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999988887541 11123333333344444455555555555544
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.6e-08 Score=102.38 Aligned_cols=305 Identities=14% Similarity=0.052 Sum_probs=185.9
Q ss_pred CCCCceeHHHHHHHHHh--cCChHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 001911 635 KEPNVYTYGALIDGLCK--VHKVREAHDLLDAMSV-VGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYT 711 (997)
Q Consensus 635 ~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 711 (997)
.+|+.......+.+++. .++...|...+-.+.. .-++.|+.....+.+.+...|+.++|+..|++....+ |+..+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhh
Confidence 34444444445555443 4555555555444433 2346678889999999999999999999999988763 33322
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 001911 712 -YGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFG 790 (997)
Q Consensus 712 -~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 790 (997)
.....-.+.+.|+++....+...+.... +-....|-.-+..+....+++.|+.+-++.++.... +...|-.-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHH
Confidence 1122233457788888777777766432 233444544555566678999999999998875322 4555555556778
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHH
Q 001911 791 KVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGL 869 (997)
Q Consensus 791 ~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 869 (997)
..|+.++|.-.|++.+.. .| +...|..|+.+|...|++.||...-+...... +
T Consensus 346 ~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~----------------------- 399 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-Q----------------------- 399 (564)
T ss_pred hccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-h-----------------------
Confidence 899999999999998875 66 68999999999999999999988777654321 0
Q ss_pred HHHhccCCCCCChhhHHHHH-HHH-HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 870 VNEMGKTDSVPIVPAYRILI-DHY-IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 870 ~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.+..++..++ ..+ ..----++|..++++.+...|+ -..+.+.++..|...|+++.++.++++.+.
T Consensus 400 ----------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~---Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 400 ----------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI---YTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred ----------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc---cHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 1111222221 111 1112234555555555555443 334444444445555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 948 KDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 948 ~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
..||....++|++.....+.+++|...|...+..+
T Consensus 467 --~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 467 --IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred --hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34555555555555555555555555555444433
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=2.9e-09 Score=108.08 Aligned_cols=286 Identities=13% Similarity=0.092 Sum_probs=191.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001911 460 GAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARN 539 (997)
Q Consensus 460 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 539 (997)
..|+|..|.+++.+-.+.+-. ....|..-..+.-..|+.+.+-..+.++-+.-..++...+-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 469999999999998777633 3345666667777889999999999998887445567777788888899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHH
Q 001911 540 WFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIV-------TFTALIDGHCKAGDIERACRIYA 612 (997)
Q Consensus 540 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~ 612 (997)
-++++.+.+.. ++........+|.+.|++.+...++..|.+.|.-.+.. +|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999988765 77788899999999999999999999999988665543 34444444433444444334444
Q ss_pred HHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001911 613 RMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDE 692 (997)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 692 (997)
..... ...++..-.+++.-+..+|+.++|.++..+..+.+..|+. .. .-.+.+-++...
T Consensus 254 ~~pr~-----------------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~ 312 (400)
T COG3071 254 NQPRK-----------------LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEP 312 (400)
T ss_pred hccHH-----------------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchH
Confidence 43222 1333444555666666677777777777666666544441 11 123345556555
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001911 693 AQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMME 771 (997)
Q Consensus 693 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 771 (997)
-++..++-.+..+. ++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+..++..
T Consensus 313 l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 313 LIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55555555544322 3455666666666666666666666655553 4666666666666666666666666666554
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=1.7e-06 Score=92.99 Aligned_cols=298 Identities=14% Similarity=0.093 Sum_probs=158.8
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN---NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN----------- 706 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------- 706 (997)
.|..+...|-..|+++.|..+|++.....++.- ..+|..-...=.+..+++.|+++.+.....--.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 355666666667777777777776665443221 233444444445556666666666655432100
Q ss_pred ------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-
Q 001911 707 ------PNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNV- 779 (997)
Q Consensus 707 ------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 779 (997)
-+...|...++..-..|-++....+++++++..+. ++.........+-...-++++.+++++-+..=..|+.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 02234555555555677778888888888776542 2222222222233445567777777665443223343
Q ss_pred HHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCH-HHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chhhHH
Q 001911 780 VTYTAMIDGFGK---VGKVDKCLELLRQMSSKGCAPNF-VTYR-VLINHCCASGLLDEAHNLLEEMKQTYWPT-HVAGYR 853 (997)
Q Consensus 780 ~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~-~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~ 853 (997)
..|+..+.-+.+ ..+.+.|..+|++.++ |++|.. .|.. .....=.+.|.-..|+.++++.....-+. ....|+
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myn 626 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYN 626 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 245554443332 2457888888888887 566642 2222 22222235677788888888765432111 122333
Q ss_pred HHHHhHhHh--HHHHHHHHHHhccCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH
Q 001911 854 KVIEGFSRE--FIVSLGLVNEMGKTDSVPIVP---AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIES 928 (997)
Q Consensus 854 ~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 928 (997)
..|+.-... ....-+++++..+. -|+.. +..-.++.-.+.|..+.|..+|.-..+..+. ..+...|..--.-
T Consensus 627 i~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP-r~~~~fW~twk~F 703 (835)
T KOG2047|consen 627 IYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP-RVTTEFWDTWKEF 703 (835)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC-cCChHHHHHHHHH
Confidence 333322211 11112333333322 35443 2333456677889999999999988776432 3466677765555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 001911 929 LSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~ 947 (997)
-.+.|+-+ .+++|++
T Consensus 704 EvrHGned----T~keMLR 718 (835)
T KOG2047|consen 704 EVRHGNED----TYKEMLR 718 (835)
T ss_pred HHhcCCHH----HHHHHHH
Confidence 56778833 4555555
No 68
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.34 E-value=2.6e-07 Score=99.88 Aligned_cols=569 Identities=17% Similarity=0.162 Sum_probs=302.0
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001911 284 GRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMM 363 (997)
Q Consensus 284 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 363 (997)
.++.+|..+|-+.. ++ ..-|..|-...++++|+.+-+. .|.+.-...-.+-+.++...|+-+.|-++-..
T Consensus 545 kkfk~ae~ifleqn---~t---e~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s- 614 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN---AT---EEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKES- 614 (1636)
T ss_pred hhhhHHHHHHHhcc---cH---HHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhccc-
Confidence 47888888876521 11 2346667777788888887653 22121122223345555667777666543211
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcC
Q 001911 364 ITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAG 443 (997)
Q Consensus 364 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g 443 (997)
.| ---+.|+.|.+.|....|......=.. +..|.....-+-.++. +.+++++|-.+|+.+.+
T Consensus 615 --dg------d~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~ali------k~elydkagdlfeki~d-- 676 (1636)
T KOG3616|consen 615 --DG------DGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALI------KGELYDKAGDLFEKIHD-- 676 (1636)
T ss_pred --cC------ccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHH------hhHHHHhhhhHHHHhhC--
Confidence 11 123457888888888777665421111 1123322222222222 12446666666654321
Q ss_pred ccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001911 444 VVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYS-KVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYT 522 (997)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 522 (997)
+...+.++-+-..+-+|.++-+-. ++..+++.. .-...+...|+++.|+..|-+.. ...
T Consensus 677 -------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~ 736 (1636)
T KOG3616|consen 677 -------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLI 736 (1636)
T ss_pred -------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHH
Confidence 112233333333344444433322 111122111 11223344556666665554432 122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 001911 523 ILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAG 602 (997)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 602 (997)
..+.+......+.+|+.+++.+..+. .....|..+...|...|+++.|.++|.+. ..++-.|.+|.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 34555666778888888888887653 23345667778888888888888887553 23455678888888
Q ss_pred CHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 001911 603 DIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALID 682 (997)
Q Consensus 603 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 682 (997)
+++.|.++-.+... .......|-+-..-+-+.|++.+|.+++-.+. .|+ ..|.
T Consensus 806 kw~da~kla~e~~~------------------~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiq 858 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG------------------PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQ 858 (1636)
T ss_pred cHHHHHHHHHHhcC------------------chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHH
Confidence 88888888776643 23445556666666777788888888776553 454 3456
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 683 GFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEE 762 (997)
Q Consensus 683 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 762 (997)
.|-+.|..+..+++.++-.-. .-..|...+..-+...|++..|..-|-+.- -|..-+++|-..+.+++
T Consensus 859 mydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 859 MYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWED 926 (1636)
T ss_pred HHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHH
Confidence 777888888777776654322 122355566677777888888877664432 24555666767777777
Q ss_pred HHHHHHHHHHCCCCCCHH-----HH------HHHHHHHhccCCHHHH-------------HHHHHHHHhCCCCCCHHHHH
Q 001911 763 AYKVMLMMEEKGCYPNVV-----TY------TAMIDGFGKVGKVDKC-------------LELLRQMSSKGCAPNFVTYR 818 (997)
Q Consensus 763 A~~~~~~m~~~g~~p~~~-----~~------~~li~~~~~~g~~~~A-------------~~l~~~m~~~g~~p~~~~~~ 818 (997)
|.++-+.- |-. |.. .| .+.++.+-++|-.+.| .++-+-..+. -.| .+..
T Consensus 927 ayriakte---gg~-n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~--~vhl 999 (1636)
T KOG3616|consen 927 AYRIAKTE---GGA-NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMG--EVHL 999 (1636)
T ss_pred HHHHHhcc---ccc-cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCc--cchh
Confidence 76654321 110 111 11 0112223334444443 3333322221 122 2233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 001911 819 VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL 898 (997)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 898 (997)
.+..-+...|++++|-+.+-+..+.. .-.+..+..+-..|..+++. .|-.|.. -+.++.+.++|
T Consensus 1000 k~a~~ledegk~edaskhyveaikln-tynitwcqavpsrfd~e~ir----------~gnkpe~-----av~mfi~dndw 1063 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEAIKLN-TYNITWCQAVPSRFDAEFIR----------AGNKPEE-----AVEMFIHDNDW 1063 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHHhhcc-cccchhhhcccchhhHHHHH----------cCCChHH-----HHHHhhhcccH
Confidence 44555678899999987777665432 11111111111111111111 1223322 33567788889
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSY 978 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~ 978 (997)
..|.++.+.-.. ... ..++.--+..-...|++-+|..++-++- .||. ..+-|.+.|.|.+|+.+.+
T Consensus 1064 a~aervae~h~~---~~l--~dv~tgqar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1064 AAAERVAEAHCE---DLL--ADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred HHHHHHHHhhCh---hhh--HHHHhhhhhccccccchhhhhhheeecC----CCch-----HHHHHHHhccChHHHHHHH
Confidence 888887664432 111 2223323333345577777777654432 4763 2344667888888888876
Q ss_pred HhhccCCcc
Q 001911 979 SICHTDINW 987 (997)
Q Consensus 979 ~~~~~~~~~ 987 (997)
.-+......
T Consensus 1130 dylp~q~a~ 1138 (1636)
T KOG3616|consen 1130 DYLPHQAAA 1138 (1636)
T ss_pred hhChhHHHH
Confidence 554444333
No 69
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=2e-06 Score=94.56 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=91.9
Q ss_pred CHHHHHHHHH--HHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-C--------CC
Q 001911 164 TPPVYNALVE--IMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDF-G--------YK 232 (997)
Q Consensus 164 ~~~~~~~l~~--~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-g--------~~ 232 (997)
|..+-.+|++ .|...|+.+.|..-++-|++. .+|..+.+.|.+..+.+-|.-++..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4555555543 345567777777666666532 36999999999999988888887776532 1 11
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 233 PTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGL 312 (997)
Q Consensus 233 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~ 312 (997)
|+ .+=..+.-.....|.+++|..+|++-.+.+ .+=..|...|.+++|.++-+....-.=-.||..-..-+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 21 111222222346777888888888766543 34446667788888888777532222233555555556
Q ss_pred HccCChHHHHHHHHHH
Q 001911 313 CEASLFEEAMDLLNRM 328 (997)
Q Consensus 313 ~~~g~~~~A~~~~~~m 328 (997)
-..++.+.|++.|++-
T Consensus 869 ear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKA 884 (1416)
T ss_pred HhhccHHHHHHHHHhc
Confidence 6667777777777753
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.7e-08 Score=99.06 Aligned_cols=272 Identities=14% Similarity=0.099 Sum_probs=129.9
Q ss_pred CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 001911 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSL 715 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 715 (997)
+.|+.....+.+++...|+.++|...|++....+ +-+........-.+.+.|+.+....+...+....- -....|..-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhh
Confidence 4455555555555555566666655555554332 11111222222223445555555555544443310 112222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKV 795 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 795 (997)
.......++++.|+.+-++.++.. +.+...+-.-...+...|+.++|.-.|+..+... +-+...|..|+..|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 333344555566665555555432 2233333333445555566666666666555431 12455566666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 796 DKCLELLRQMSSKGCAPNFVTYRVLI-NHCC-ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 796 ~~A~~l~~~m~~~g~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
.+|.-+-+..... +.-+..+...+. ..|. ...--++|.+++++....
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~------------------------------ 433 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI------------------------------ 433 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc------------------------------
Confidence 6665555544432 122333333331 1111 222235555555554332
Q ss_pred ccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 874 GKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 874 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
.|+ .++.+.++..+...|..++++.++++.+...| |...++.|+......+.+.+|...|..+++ +.|
T Consensus 434 -----~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~----D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP 502 (564)
T KOG1174|consen 434 -----NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP----DVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDP 502 (564)
T ss_pred -----CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc----ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCc
Confidence 233 23444555555566666666666666555432 555555566666556666666666666555 445
Q ss_pred C
Q 001911 953 E 953 (997)
Q Consensus 953 ~ 953 (997)
.
T Consensus 503 ~ 503 (564)
T KOG1174|consen 503 K 503 (564)
T ss_pred c
Confidence 3
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=2.8e-08 Score=98.49 Aligned_cols=445 Identities=10% Similarity=0.081 Sum_probs=240.3
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQA 537 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 537 (997)
+....++..|+.+++--...+-.....+-..+..++.+.|++++|...+..+.+.. .++...+..|..++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 34568889999988877655433222333445566778899999999999887754 45667777777777778999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001911 538 RNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGN 617 (997)
Q Consensus 538 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 617 (997)
..+-....+ ++-.-..|++...+.++-++-..+.+.+... ...-.++.......-.+.+|++++.++...
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887665432 4445556666677778877777766665432 233445566666667889999999998764
Q ss_pred cCCCchhHHHHHhccCCCCCCceeHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001911 618 AEISDVDIYFRVLDNNCKEPNVYTYGALI-DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMV 696 (997)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 696 (997)
.|+....|..+ -+|.+..-++-+.++++-....- +.++...|.......+.=+-..|..-
T Consensus 181 ------------------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 181 ------------------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred ------------------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHH
Confidence 34444444443 36788888888888888777652 44556666555544444333344444
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001911 697 FSKMLEHGCNPNVYTYGSLIDRLFKD-----KRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMME 771 (997)
Q Consensus 697 ~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 771 (997)
.+.+.+.+-.. | -.+.-++++ .+-+.|++++-.+.+. -|. .--.|+-.|.+++++.+|..+.+.+.
T Consensus 242 ~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 242 KKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred HHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcC
Confidence 44444443211 1 122333333 2446677776665543 222 22334555777788888887776653
Q ss_pred HCCCCCCHHHHHHHHHH-Hh----ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001911 772 EKGCYPNVVTYTAMIDG-FG----KVGKVDKCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYW 845 (997)
Q Consensus 772 ~~g~~p~~~~~~~li~~-~~----~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 845 (997)
- ..|-......+..+ ++ ......-|.+.|+-.-+.+..-| ...--++...+.-..++++.+.+++.+..-..
T Consensus 313 P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~ 390 (557)
T KOG3785|consen 313 P--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT 390 (557)
T ss_pred C--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 22323222222221 11 11223445555544433333222 11223344445555567777777777655433
Q ss_pred CCchhhHHHHHHh-HhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHH
Q 001911 846 PTHVAGYRKVIEG-FSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLL 924 (997)
Q Consensus 846 ~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 924 (997)
..+...+.-.-.. -...+.+|.+++..+....+.........|+.+|.+.|+.+-|-+++-++-... ..-...-.
T Consensus 391 NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~----e~fsLLql 466 (557)
T KOG3785|consen 391 NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS----ERFSLLQL 466 (557)
T ss_pred CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch----hHHHHHHH
Confidence 3333222221111 112333444444444322222222222344455555565555555444433211 01122223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 001911 925 LIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 925 l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++..|.+.+++=-|-+.+..+-.
T Consensus 467 IAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 467 IANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHc
Confidence 44455555554444444444444
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=1e-09 Score=113.16 Aligned_cols=201 Identities=14% Similarity=0.078 Sum_probs=159.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
....+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35567777888888888888888888887653 2356677778888888899999999998888763 235667788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 001911 823 HCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVAL 902 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 902 (997)
.+...|++++|...+++...... .......+..++..+...|++++|.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL--------------------------------YPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc--------------------------------cccchHHHHHHHHHHHHcCCHHHHH
Confidence 88999999999999988765210 0112335667888999999999999
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
+.++++....|. +...+..++..+...|++++|...++++.+. .| +...+..++.++...|+.++|..+.+.+.
T Consensus 156 ~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 156 KYLTRALQIDPQ---RPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHhCcC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999887664 5678888999999999999999999999884 45 46777888999999999999999888765
Q ss_pred c
Q 001911 982 H 982 (997)
Q Consensus 982 ~ 982 (997)
.
T Consensus 231 ~ 231 (234)
T TIGR02521 231 K 231 (234)
T ss_pred h
Confidence 4
No 73
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.31 E-value=3.4e-06 Score=91.53 Aligned_cols=543 Identities=16% Similarity=0.152 Sum_probs=270.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCC
Q 001911 206 LIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGR 285 (997)
Q Consensus 206 li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 285 (997)
-|+.|.+.|++-.|...-..=. -+..|......+..++.+..-++.|-.+|+.+..- .-.+..|-+..-
T Consensus 621 aiqlyika~~p~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgda 689 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccH
Confidence 4566777777766655332111 12334444455555565655566666666655321 111222222223
Q ss_pred HHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001911 286 WKEALELIEKEEFVPDTVLYT-KMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMI 364 (997)
Q Consensus 286 ~~~A~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 364 (997)
+..|.++-+- .++..+++.. .-..-+.+.|.++.|+.-|-+... ....+.+.....++.+|..+++.+.
T Consensus 690 f~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniq 759 (1636)
T KOG3616|consen 690 FGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQ 759 (1636)
T ss_pred HHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhh
Confidence 4444443221 1111222211 122334455666666665544322 1233455566777888888888776
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCc
Q 001911 365 TEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGV 444 (997)
Q Consensus 365 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 444 (997)
... .....|..+.+.|...|+++.|.++|-+.-. ++.
T Consensus 760 dqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~~---------~~d-------------------------------- 796 (1636)
T KOG3616|consen 760 DQK--TASGYYGEIADHYANKGDFEIAEELFTEADL---------FKD-------------------------------- 796 (1636)
T ss_pred hhc--cccccchHHHHHhccchhHHHHHHHHHhcch---------hHH--------------------------------
Confidence 653 2233466677888888888888888754321 111
Q ss_pred cccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001911 445 VLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTIL 524 (997)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 524 (997)
.+..|.+.|+|+.|.++-++... .......|..-..-+-..|++.+|.+++-.+. .|+ ..
T Consensus 797 ---------ai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~a 856 (1636)
T KOG3616|consen 797 ---------AIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KA 856 (1636)
T ss_pred ---------HHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HH
Confidence 22335577888888887766532 23334455555555666777877777765443 233 34
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001911 525 IDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDI 604 (997)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 604 (997)
|.+|-+.|..+..+++.++-... .-..|...+..-+-..|+...|..-|-+.- .|.+-+++|-..+-+
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw 924 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELW 924 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhH
Confidence 66777888888877777664322 122345556666777788777776664332 245556666666667
Q ss_pred HHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001911 605 ERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGF 684 (997)
Q Consensus 605 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 684 (997)
++|.++-+.--. .| .-..++-..++.=--+.|.+++++.- ....-++.-
T Consensus 925 ~dayriaktegg--------------------~n--~~k~v~flwaksiggdaavkllnk~g---------ll~~~id~a 973 (1636)
T KOG3616|consen 925 EDAYRIAKTEGG--------------------AN--AEKHVAFLWAKSIGGDAAVKLLNKHG---------LLEAAIDFA 973 (1636)
T ss_pred HHHHHHHhcccc--------------------cc--HHHHHHHHHHHhhCcHHHHHHHHhhh---------hHHHHhhhh
Confidence 666655432111 01 11111222333323344555544321 122334444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHHcC-
Q 001911 685 CKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMI-----DGLIKVG- 758 (997)
Q Consensus 685 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g- 758 (997)
+..+.++-|.++-+-..+... |.+. ..+...+...|++++|-+-+-+.++.+. -..||...+ .-+.+.|
T Consensus 974 ~d~~afd~afdlari~~k~k~-~~vh--lk~a~~ledegk~edaskhyveaiklnt--ynitwcqavpsrfd~e~ir~gn 1048 (1636)
T KOG3616|consen 974 ADNCAFDFAFDLARIAAKDKM-GEVH--LKLAMFLEDEGKFEDASKHYVEAIKLNT--YNITWCQAVPSRFDAEFIRAGN 1048 (1636)
T ss_pred hcccchhhHHHHHHHhhhccC-ccch--hHHhhhhhhccchhhhhHhhHHHhhccc--ccchhhhcccchhhHHHHHcCC
Confidence 555666666665555444321 2222 1223334556777777666655554321 011111110 1122333
Q ss_pred CHHHHHHHHHH---------HHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001911 759 KTEEAYKVMLM---------MEEKGCYPN--VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCAS 827 (997)
Q Consensus 759 ~~~~A~~~~~~---------m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~ 827 (997)
++++|..+|-. ..+. -.|+ +..|..-.++....|++.+|..++-+.. +|+.. ++-|...
T Consensus 1049 kpe~av~mfi~dndwa~aervae~-h~~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~i~-----l~yf~e~ 1118 (1636)
T KOG3616|consen 1049 KPEEAVEMFIHDNDWAAAERVAEA-HCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDIA-----LNYFIEA 1118 (1636)
T ss_pred ChHHHHHHhhhcccHHHHHHHHHh-hChhhhHHHHhhhhhccccccchhhhhhheeecC----CCchH-----HHHHHHh
Confidence 44444444421 1111 1112 2234444555566788888877655443 46643 4455667
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 828 GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEE 907 (997)
Q Consensus 828 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 907 (997)
+.|.+|+.+.+.. .|..... +-..+. .+...+| ...+..+..-+.-..++|+|.+|...+-+
T Consensus 1119 ~lw~dalri~kdy----lp~q~a~---iqeeye----------k~~~k~g-argvd~fvaqak~weq~gd~rkav~~~lk 1180 (1636)
T KOG3616|consen 1119 ELWPDALRIAKDY----LPHQAAA---IQEEYE----------KEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLK 1180 (1636)
T ss_pred ccChHHHHHHHhh----ChhHHHH---HHHHHH----------HHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHHhh
Confidence 7788877766432 2222111 000110 0111122 12334455555666677777777776665
Q ss_pred H
Q 001911 908 M 908 (997)
Q Consensus 908 ~ 908 (997)
+
T Consensus 1181 i 1181 (1636)
T KOG3616|consen 1181 I 1181 (1636)
T ss_pred h
Confidence 5
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=9.3e-08 Score=106.45 Aligned_cols=305 Identities=17% Similarity=0.140 Sum_probs=188.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 001911 456 QCLCGAGKYEKAYNVIREMMSKGFIPDTS-TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKA--- 531 (997)
Q Consensus 456 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~--- 531 (997)
..+...|++++|++.++.-... .+|.. ........+.+.|+.++|..+++.+++.++. |..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence 3456889999999999886554 45544 4566678888999999999999999998643 566666666666333
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001911 532 --GLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKP-SQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERAC 608 (997)
Q Consensus 532 --g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 608 (997)
.+.+....+++++...- |...+...+.-.+.....+ ..+...+..+...|+++ +|+.+-..|.......-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 25778889999887763 3333333333333332223 34566677778888543 4555555565444444455
Q ss_pred HHHHHHHhccCCCchhHHHHHhccCCCCCCce--eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 001911 609 RIYARMKGNAEISDVDIYFRVLDNNCKEPNVY--TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCK 686 (997)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 686 (997)
+++............- .........+|... ++.-+...|-..|++++|++.+++.+... +..+..|..-...+-+
T Consensus 164 ~l~~~~~~~l~~~~~~--~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSF--SNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHhhcccCCC--CCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 5555544321100000 00000001234432 33455666777888888888888777764 3335667777777788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHHcC
Q 001911 687 VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVV------IY--TEMIDGLIKVG 758 (997)
Q Consensus 687 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g 758 (997)
.|++.+|.+.++........ |...-+-.+..+.+.|+.++|.+++....+.+..|-.. .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888777654 66666667777778888888888877776654322211 11 22345666667
Q ss_pred CHHHHHHHHHHHHH
Q 001911 759 KTEEAYKVMLMMEE 772 (997)
Q Consensus 759 ~~~~A~~~~~~m~~ 772 (997)
++..|++.|....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 76666666655443
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=3e-10 Score=110.93 Aligned_cols=236 Identities=14% Similarity=0.060 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGL 754 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 754 (997)
.--+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|-.+|.+..+.+.|+.++.+-++. ++-|+.....+...+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33456777777777777777777777766 345556666777777777777777777777664 233444445556666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAH 834 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 834 (997)
-..++.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+++++.|+ -+...|+.+.-+|...+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 67777777777777776652 22555555666667777777777777777777763 35666777777777777777777
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 001911 835 NLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI--VPAYRILIDHYIKAGRLEVALELHEEMTSFS 912 (997)
Q Consensus 835 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 912 (997)
.-|++....- ..|+ .+.|+.|+......|+..-|.+.|+-++..+
T Consensus 379 ~sf~RAlsta---------------------------------t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 379 PSFQRALSTA---------------------------------TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHHhhc---------------------------------cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 7776655431 1233 3467777777777777777777777777666
Q ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 913 SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 913 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
++ +...+++|+-.-.+.|++++|..+++.+.. +.|+
T Consensus 426 ~~---h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 426 AQ---HGEALNNLAVLAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred cc---hHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCcc
Confidence 54 667777777766777777777777777766 5665
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=1.5e-09 Score=125.64 Aligned_cols=252 Identities=12% Similarity=0.027 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001911 690 LDEAQMVFSKMLEHGCNPNVYTYGSLIDRLF---------KDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT 760 (997)
Q Consensus 690 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 760 (997)
.++|...|++..+..+. +...|..+..++. ..+++++|...+++.++.+ +.+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 35555556555554322 2333433333332 2234677777777777654 34566677777777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 761 EEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEE 839 (997)
Q Consensus 761 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (997)
++|...|+++.+.+.. +...+..+...+...|++++|+..+++..+. .|+ ...+..++..+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 8888888877775322 4556667777777788888888888887775 343 22333344455667778888877777
Q ss_pred HHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcc
Q 001911 840 MKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAAS 918 (997)
Q Consensus 840 m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 918 (997)
..... .|+.+ .+..++.+|...|+.++|.+.++++....|. +
T Consensus 432 ~l~~~----------------------------------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~---~ 474 (553)
T PRK12370 432 LRSQH----------------------------------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT---G 474 (553)
T ss_pred HHHhc----------------------------------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch---h
Confidence 65432 23322 4566777777788888888888777655443 4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccc
Q 001911 919 RNSTLLLIESLSLARKIDKAFELYVDMIRKD-GSPELSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWL 988 (997)
Q Consensus 919 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~ 988 (997)
......+...|...| ++|...++++.+.. ..|.. ...+...|.-.|+-+.+..+ +++.+.+-.|.
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 540 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGEAIAEKMW-NKFKNEDNIWF 540 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhhhHHHHHH-HHhhccchHhh
Confidence 455555555556556 46666666665521 12221 12255555556665555555 66666555443
No 77
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.27 E-value=4.2e-06 Score=94.54 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=119.3
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCH
Q 001911 208 HKCCRNGFWNVALEELGRLKDFGYKPT-QAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRW 286 (997)
Q Consensus 208 ~~y~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 286 (997)
..|.+ .+...|+..|-+..+. .|+ ...|..|...|+..-+...|...|+...+.+ ..+..........|+....+
T Consensus 467 ~~~~r-K~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 467 LGCMR-KNSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHhh-hhHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccH
Confidence 34444 3466777777666553 233 4567777777777767777888888777665 45666777778888888888
Q ss_pred HHHHHHHHhC----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHH
Q 001911 287 KEALELIEKE----EFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSM 362 (997)
Q Consensus 287 ~~A~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 362 (997)
++|..+.-.. +...-...|-.+.-.|.+.++...|+.-|+...... +-|...+..+..+|...|.+..|..+|.+
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 8887764321 111112233333445667778888888887776553 34566777888888888888888888877
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001911 363 MITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRK 400 (997)
Q Consensus 363 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (997)
..... +.+...---...+-|-.|.+.+|+..+.....
T Consensus 622 As~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 622 ASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 76653 22222222334445677888888887777653
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=6.9e-10 Score=108.48 Aligned_cols=232 Identities=9% Similarity=-0.038 Sum_probs=194.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 001911 712 YGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK 791 (997)
Q Consensus 712 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 791 (997)
-+.+..+|.+.|-+.+|.+.++..++. .|-+.||-.|-..|.+..+...|+.++.+-.+. ++-|+.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356788999999999999999998876 467778888999999999999999999998875 33355555567778888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHH
Q 001911 792 VGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVN 871 (997)
Q Consensus 792 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 871 (997)
.++.++|.++|+...+.. ..+.+...++...|.-.++.+-|+.+++++.+-+
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--------------------------- 354 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--------------------------- 354 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc---------------------------
Confidence 999999999999998862 3367888888889999999999999999998765
Q ss_pred HhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001911 872 EMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS 951 (997)
Q Consensus 872 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 951 (997)
..+...|..++-+|.-.+++|-++.-|++++..-.+......+|.+++......|++.-|.+.+.-++. -.
T Consensus 355 -------~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d 425 (478)
T KOG1129|consen 355 -------AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SD 425 (478)
T ss_pred -------CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cC
Confidence 344567888999999999999999999998865333335678999999999999999999999999888 45
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 952 PE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 952 p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
|+ .++++.|+-.-.+.|+.++|..+++.....
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 76 789999999999999999999999876654
No 79
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.25 E-value=7.6e-06 Score=88.18 Aligned_cols=582 Identities=13% Similarity=0.128 Sum_probs=290.9
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHh-CCC
Q 001911 153 LWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKD-FGY 231 (997)
Q Consensus 153 ~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~g~ 231 (997)
+|+... +..++...|..+-+++-+ +.-++.+|+ ++|-.-.....++|+...-..+|++.+. ..+
T Consensus 70 R~~~vk-~~~~T~~~~~~vn~c~er------~lv~mHkmp--------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv 134 (835)
T KOG2047|consen 70 RRAQVK-HLCPTDPAYESVNNCFER------CLVFMHKMP--------RIWLDYLQFLIKQGLITRTRRTFDRALRALPV 134 (835)
T ss_pred HHHHhh-ccCCCChHHHHHHHHHHH------HHHHHhcCC--------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCch
Confidence 455443 556667778777777643 333444443 3577777777788888888888888654 233
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 232 KPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISG 311 (997)
Q Consensus 232 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~ 311 (997)
......|...+.-.-..|-++.+.++|+.-++.. | ..-.-.|..+++.+++++|.+.+...- ++...
T Consensus 135 tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L~~~d~~~eaa~~la~vl--n~d~f------- 201 (835)
T KOG2047|consen 135 TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--P--EAREEYIEYLAKSDRLDEAAQRLATVL--NQDEF------- 201 (835)
T ss_pred HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHHHhccchHHHHHHHHHhc--Cchhh-------
Confidence 3334567777777777788888889998887643 2 236677788888888888888776521 11111
Q ss_pred HHccCChHH-HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCH
Q 001911 312 LCEASLFEE-AMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPS--PRIFHSLIHAYCRSGDY 388 (997)
Q Consensus 312 ~~~~g~~~~-A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~ 388 (997)
+.+.|+... -...+..+... .|+.+. .-+ ...++..+... -+| ...|++|.+.|.+.|.+
T Consensus 202 ~sk~gkSn~qlw~elcdlis~--~p~~~~----------sln---vdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 202 VSKKGKSNHQLWLELCDLISQ--NPDKVQ----------SLN---VDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred hhhcccchhhHHHHHHHHHHh--Ccchhc----------ccC---HHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhh
Confidence 111221110 01111111111 122110 001 11122222222 222 34577777777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHH
Q 001911 389 SYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAY 468 (997)
Q Consensus 389 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (997)
+.|.++|++.... .-.+.-++.+...|..-. +......-++ .....-+.. ..-+++-..
T Consensus 265 ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FE--------E~~~~~~me~-a~~~~~n~e----------d~~dl~~~~ 323 (835)
T KOG2047|consen 265 EKARDVYEEAIQT--VMTVRDFTQIFDAYAQFE--------ESCVAAKMEL-ADEESGNEE----------DDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHh--heehhhHHHHHHHHHHHH--------HHHHHHHHhh-hhhcccChh----------hhhhHHHHH
Confidence 8888777776643 123334444444442110 0000000000 000000000 011222233
Q ss_pred HHHHHHHHCC-----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHc
Q 001911 469 NVIREMMSKG-----------FIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIP------DVYTYTILIDNFCKA 531 (997)
Q Consensus 469 ~ll~~m~~~g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~------~~~~~~~li~~~~~~ 531 (997)
.-|+.+.... -+-++..|..-+.. ..|+..+-...+.++.+. +.| -...|..+...|-..
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhc
Confidence 3333333321 01122233322222 234444555555554432 111 123455555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001911 532 GLIEQARNWFDEMVKEGCDPN---VVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERAC 608 (997)
Q Consensus 532 g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 608 (997)
|+++.|..+|++..+...+-- ..+|..-...=.+..+++.|+++++..... |.... ..+...+..-++
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ~- 471 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQA- 471 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHHH-
Confidence 666666666655554322211 122322333333344445555544443321 11111 011111111111
Q ss_pred HHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 001911 609 RIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVG 688 (997)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 688 (997)
.+ ..+...|...++..-..|-++....+++++....+.....+.| ....+-.+.
T Consensus 472 rl-------------------------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~ 525 (835)
T KOG2047|consen 472 RL-------------------------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHK 525 (835)
T ss_pred HH-------------------------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhH
Confidence 01 1233456666666666778888888888888766433222222 222334556
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHH
Q 001911 689 KLDEAQMVFSKMLEHGCNPNVY-TYGSLIDRLFK---DKRLDLALKVISKMLEDSYAPNVVIYTEMID--GLIKVGKTEE 762 (997)
Q Consensus 689 ~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~ 762 (997)
-++++.+++++-+..=.-|++. .|++.+..+.+ ..+++.|..+|++.++ |++|...-+--|+. .--+.|-...
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6788888887766654345543 45554444433 3568889999999888 66655432222221 1223577778
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHH
Q 001911 763 AYKVMLMMEEKGCYPN--VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFV---TYRVLINHCCASGLLDEAHNLL 837 (997)
Q Consensus 763 A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~ 837 (997)
|..+++++... +++. ...||..|.--...=-+.....+|++..+. -|+.. ......+.=++.|..+.|..++
T Consensus 605 amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 605 AMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 88888886654 4432 346777765433222233455677777765 45432 2334455567788888888888
Q ss_pred HHHHh
Q 001911 838 EEMKQ 842 (997)
Q Consensus 838 ~~m~~ 842 (997)
.--.+
T Consensus 682 a~~sq 686 (835)
T KOG2047|consen 682 AHGSQ 686 (835)
T ss_pred Hhhhh
Confidence 66544
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=3.4e-09 Score=109.18 Aligned_cols=200 Identities=15% Similarity=0.059 Sum_probs=131.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001911 709 VYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG 788 (997)
Q Consensus 709 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 788 (997)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3445556666666677777777766666543 33455666666677777777777777777766532 245566666677
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHH
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSL 867 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~ 867 (997)
+...|++++|.+.+++.......| ....+..+..++...|++++|...+++.....
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------- 165 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID----------------------- 165 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Confidence 777777777777777776642222 34556667777777888888888887765532
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 868 GLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 868 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+.+...+..++..+...|++++|.+.++++....|. +...+..++..+...|+.++|..+.+.+.+
T Consensus 166 -----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 166 -----------PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ---TAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -----------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 112345666777788888888888888877765432 555566667777777888888777776655
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.4e-11 Score=90.23 Aligned_cols=50 Identities=42% Similarity=0.788 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 001911 300 PDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLR 349 (997)
Q Consensus 300 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 349 (997)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 82
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=3.8e-09 Score=122.26 Aligned_cols=250 Identities=16% Similarity=0.014 Sum_probs=183.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 001911 653 HKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCK---------VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK 723 (997)
Q Consensus 653 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 723 (997)
+.+++|.+.|++..+.. +.+...|..+..+|.. .+++++|...++++.+.++. +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 34689999999998875 4455666666655442 24589999999999998755 7778888888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLR 803 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 803 (997)
++++|...|++.++.+ +.+...+..+...+...|++++|...++++.+.... +...+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999875 445677888999999999999999999999986443 23333444555777899999999999
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-
Q 001911 804 QMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI- 881 (997)
Q Consensus 804 ~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~- 881 (997)
++.... .| +...+..+..++...|++++|...++++.... |+
T Consensus 431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-----------------------------------~~~ 474 (553)
T PRK12370 431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-----------------------------------ITG 474 (553)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----------------------------------chh
Confidence 988753 35 45567788889999999999999998875432 32
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
....+.+...|...| ++|...++.+.+.... .......+...+.-.|+.+.+... +++.+.
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQR---IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH---hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 334566667777777 4788777776653211 111122245556667887777665 777663
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=5.4e-09 Score=114.53 Aligned_cols=241 Identities=19% Similarity=0.164 Sum_probs=160.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC-C-CHH
Q 001911 715 LIDRLFKDKRLDLALKVISKMLED-----S-YAPNV-VIYTEMIDGLIKVGKTEEAYKVMLMMEEK-----GCY-P-NVV 780 (997)
Q Consensus 715 li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p-~~~ 780 (997)
+...|...|+++.|..+++..++. | ..|.. ...+.+...|...+++++|..+|+++..- |-. | -..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 444444444444444444444322 1 01222 23334667788888888888888887642 221 1 234
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHh---C--CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 001911 781 TYTAMIDGFGKVGKVDKCLELLRQMSS---K--GCAP-N-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYR 853 (997)
Q Consensus 781 ~~~~li~~~~~~g~~~~A~~l~~~m~~---~--g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 853 (997)
+++.|..+|.+.|++++|..++++..+ + |..+ . ...++.++..|+..+++++|..++++....+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~--------- 355 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY--------- 355 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---------
Confidence 667777788888888888877777554 1 2222 2 3456678888999999999999998765421
Q ss_pred HHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCC----CC-CCcchhhHHHHHH
Q 001911 854 KVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFS----SN-SAASRNSTLLLIE 927 (997)
Q Consensus 854 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~~~l~~ 927 (997)
....... .|. ..++..|+..|...|++++|.+++++++... .. ..--...++.++.
T Consensus 356 -----------------~~~~g~~-~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 356 -----------------LDAPGED-NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred -----------------Hhhcccc-chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 1111001 112 2378899999999999999999999987642 11 1122456777899
Q ss_pred HHHhcCCHHHHHHHHHHHHH----cC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 928 SLSLARKIDKAFELYVDMIR----KD-GSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 928 ~~~~~g~~~~A~~~~~~~~~----~~-~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.|...+++++|.++|.+.+. -| ..|+ ..+|..|+.+|.+.|++++|.++.+.+..
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99899999988888887654 11 2344 46889999999999999999999988763
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=1.5e-08 Score=110.99 Aligned_cols=247 Identities=17% Similarity=0.118 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-
Q 001911 674 NIVYDALIDGFCKVGKLDEAQMVFSKMLEH-----GC-NPNVYT-YGSLIDRLFKDKRLDLALKVISKMLED-----SY- 740 (997)
Q Consensus 674 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~- 740 (997)
..+...+...|...|+++.|+.+++..++. |. .|.+.+ .+.+...|...+++.+|..+|++++.- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555778888888888888888877664 21 133332 334677888899999999999988642 21
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhC---C
Q 001911 741 -APNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-----GC-YPNV-VTYTAMIDGFGKVGKVDKCLELLRQMSSK---G 809 (997)
Q Consensus 741 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g 809 (997)
+.-..+++.|...|.+.|++++|...+++..+- |. .|.+ ..++.++..+...+++++|..++++..+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 112457788888999999999998888876541 22 2222 23556677788999999999999887652 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhh
Q 001911 810 CAPN----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPA 884 (997)
Q Consensus 810 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~ 884 (997)
+.++ ..++..|...|...|++++|.++++++.+.. ++..... .+. ...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~--------------------------~~~~~~~-~~~~~~~ 411 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL--------------------------RELLGKK-DYGVGKP 411 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH--------------------------HhcccCc-ChhhhHH
Confidence 2232 5689999999999999999999999876531 1111111 122 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTS----FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++.|+..|.+.+++++|.++|.+... ..|+.+.-..+|..|+..|...|++++|+++.+.+..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77899999999999999999988654 3455555678899999999999999999999988863
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.9e-05 Score=87.13 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=96.1
Q ss_pred CCHHHHHHHHH-----hCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhcc----------
Q 001911 130 LSESLVVNVLN-----LIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNE---------- 194 (997)
Q Consensus 130 l~~~~~~~vl~-----~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~---------- 194 (997)
.++.+--.+|+ ..++.+.|.+-.+ +-.+-.+|..|.+++.+.++.+.|.-.+-.|...
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~-------~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQ-------FIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHH-------HHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 44555555554 3456666644333 2345678999999999999998888777666432
Q ss_pred -CchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhH
Q 001911 195 -DKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTL 273 (997)
Q Consensus 195 -~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 273 (997)
+++-. =..+...-.+.|+.++|+.+|++-++. ..|=..|...|.+++|.++-+.--+..+ ..||
T Consensus 797 q~~~e~---eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 797 QNGEED---EAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred hCCcch---hhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 11111 112222334679999999999998753 2333456788999999887664322111 2366
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC
Q 001911 274 GCFAYSLCKAGRWKEALELIEKEEF 298 (997)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~~~ 298 (997)
.-...-+-..++.+.|++.|++.+.
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCC
Confidence 6677777788999999999998653
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=5.4e-08 Score=108.32 Aligned_cols=291 Identities=17% Similarity=0.179 Sum_probs=208.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-----
Q 001911 647 DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK----- 721 (997)
Q Consensus 647 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----- 721 (997)
..+...|++++|++.+..-... +......+......+.+.|+.++|..+|..+++.++. +..-|..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 4567889999999999876543 2333455667788899999999999999999999643 44444555555422
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 001911 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT-EEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLE 800 (997)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 800 (997)
....+....+++++...- |......-+.-.+.....+ ..+..++..+..+|+++ +|+.|-..|....+.+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 235778888898887653 3333332222222222233 34666777888888763 46666666665555555566
Q ss_pred HHHHHHhC----CC----------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHH
Q 001911 801 LLRQMSSK----GC----------APNF--VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFI 864 (997)
Q Consensus 801 l~~~m~~~----g~----------~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 864 (997)
++...... |- .|.. .++..+...|...|++++|++++++..+.
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------------------- 223 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------------------- 223 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------------------
Confidence 66665432 11 2333 45677788899999999999999988763
Q ss_pred HHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 865 VSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYV 943 (997)
Q Consensus 865 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 943 (997)
.|+ +..|...+.+|.+.|++++|.+.++.+...++. |..+-...+.-+.+.|++++|.+...
T Consensus 224 --------------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~---DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 224 --------------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA---DRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred --------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh---hHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 465 558889999999999999999999999998764 66666666777788999999999999
Q ss_pred HHHHcCCCC--CH----HHHH--HHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 944 DMIRKDGSP--EL----STFV--HLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 944 ~~~~~~~~p--~~----~~~~--~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
...+.+..| |. ..|+ --+.+|.+.|++..|++.+..+..
T Consensus 287 ~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 287 LFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 998877555 21 2454 578899999999999999887765
No 87
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=9.1e-11 Score=85.85 Aligned_cols=50 Identities=40% Similarity=0.873 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhc
Q 001911 370 PSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICG 419 (997)
Q Consensus 370 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 419 (997)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|.++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888763
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=3.5e-06 Score=90.09 Aligned_cols=188 Identities=17% Similarity=0.218 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh-ccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 001911 758 GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG-FG-KVGKVDKCLELLRQMSSKGCAP--NFVTYRVLINHCCASGLLDEA 833 (997)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~-~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 833 (997)
+..+.+.++...... ..|... +.+++.. .. +.....+|.+++....+. .| ...+...++......|+++.|
T Consensus 321 nk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 321 NKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred hhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 555666665554432 234433 3334333 32 233577888888888775 45 356677777888899999999
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcC--
Q 001911 834 HNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSF-- 911 (997)
Q Consensus 834 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 911 (997)
.+++..... -|.+. +.++ +..| .+...+...|.+.++.+-|..++.++...
T Consensus 396 ~~il~~~~~-~~~ss---------------------~~~~---~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~ 448 (652)
T KOG2376|consen 396 LEILSLFLE-SWKSS---------------------ILEA---KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWR 448 (652)
T ss_pred HHHHHHHhh-hhhhh---------------------hhhh---ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 999985431 11100 0000 1123 23445666777777777777777766542
Q ss_pred --CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 912 --SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 912 --~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
.+.+..-...+..++.--.+.|+-++|...++++.+ ..| |..+...|+-+|++.. -+.|..+-+.+
T Consensus 449 ~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 449 KQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 222111222233333333456999999999999998 556 5888888998888876 46676666544
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.9e-06 Score=90.68 Aligned_cols=474 Identities=13% Similarity=0.134 Sum_probs=239.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCchhHHHHHHHHH
Q 001911 203 LNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGF-SMDGFTLGCFAYSLC 281 (997)
Q Consensus 203 ~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~ 281 (997)
..+=+.-+...|++++|++.-.++...+ +.+...+..=+-++...+.+++|..+.+ ..+. ..+.+-+.--..+..
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchhhhcchhhHHHHHHHH
Confidence 3344566788899999999999999866 5556777777778889999999984433 2221 111111122233445
Q ss_pred hcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcCChhHHHHH
Q 001911 282 KAGRWKEALELIEKEEFVP-DTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVV-TFRILLCGCLRKRQLGRCKRV 359 (997)
Q Consensus 282 ~~g~~~~A~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~ 359 (997)
+.++.++|+..++. ..+ +..+...-...+.+.|++++|+++|+.+.+.+...... .-..++.+- .+...
T Consensus 91 rlnk~Dealk~~~~--~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKG--LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQV 161 (652)
T ss_pred HcccHHHHHHHHhc--ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhH
Confidence 78999999999984 333 33466666778899999999999999998775322111 111111110 01111
Q ss_pred HHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHH
Q 001911 360 LSMMITEGCYP--SPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYA 437 (997)
Q Consensus 360 ~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~ 437 (997)
..+......| +-..+......+...|++.+|+++++...+.|.. .++. ++.. .+.++.-+..
T Consensus 162 -~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~~-~d~~-eEeie~el~~-- 225 (652)
T KOG2376|consen 162 -QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLED-EDTN-EEEIEEELNP-- 225 (652)
T ss_pred -HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhcc-cccc-hhhHHHHHHH--
Confidence 1122222222 2222233445667889999999999887442100 0100 0000 0000000000
Q ss_pred HHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---hcCCHH--HHHHHHHHHHHC
Q 001911 438 EMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLC---DASEAE--KAFLLFQEMKRN 512 (997)
Q Consensus 438 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~---~~g~~~--~A~~~~~~~~~~ 512 (997)
.--.+...+...|+-++|.+++...+... .+|........+.+. ...++- .++..++....
T Consensus 226 ------------IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~- 291 (652)
T KOG2376|consen 226 ------------IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF- 291 (652)
T ss_pred ------------HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHH-
Confidence 01124555667889999999888888775 445432222221111 111111 11111111110
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 001911 513 GLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTY-TALIHAYLKARKPSQANELFETMLSKGCIPNIVTF 591 (997)
Q Consensus 513 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 591 (997)
...+.++..|..=.. ..... +.++..| .+..+.+.++...+.. ..|....-
T Consensus 292 -------------------~l~~~~l~~Ls~~qk-----~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~~~~ 343 (652)
T KOG2376|consen 292 -------------------KLAEFLLSKLSKKQK-----QAIYRNNALLALF--TNKMDQVRELSASLPG--MSPESLFP 343 (652)
T ss_pred -------------------HhHHHHHHHHHHHHH-----HHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchHHHH
Confidence 001111111111111 11122 2233333 2334444444433322 23333332
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHH-------
Q 001911 592 TALIDGH-CKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLD------- 663 (997)
Q Consensus 592 ~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------- 663 (997)
+.+..+. ++.....+|.+++....+.. ......+.-.++......|+++.|.+++.
T Consensus 344 ~ll~~~t~~~~~~~~ka~e~L~~~~~~~----------------p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 344 ILLQEATKVREKKHKKAIELLLQFADGH----------------PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhccC----------------CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 3333332 22334666666666665432 11123344555666777888888888888
Q ss_pred -HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHh----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 664 -AMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHG--CNPNVYT----YGSLIDRLFKDKRLDLALKVISKML 736 (997)
Q Consensus 664 -~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~~~ 736 (997)
.+.+.+..|-.+ .++...+.+.++-+.|..++...+..- -.+.... +.-+...-.+.|+.++|..+++++.
T Consensus 408 ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 408 SSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 555554444443 456666777777666777666665420 0111122 2222233345566666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001911 737 EDSYAPNVVIYTEMIDGLIKVGKTEEAYKVM 767 (997)
Q Consensus 737 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 767 (997)
+.. ++|..+...++.+|++. +.+.|..+-
T Consensus 486 k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 486 KFN-PNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HhC-CchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 532 45556666666666642 344554443
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.2e-08 Score=107.90 Aligned_cols=240 Identities=11% Similarity=-0.039 Sum_probs=153.0
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 686 KVGKLDEAQMVFSKMLEHGC-NPN--VYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEE 762 (997)
Q Consensus 686 ~~g~~~~A~~~~~~m~~~g~-~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 762 (997)
..+..+.++.-+.+++.... .|+ ...|..+...+...|+.++|...|++.++.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34567777888877775432 222 3456667777888888888888888888764 3456788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 763 AYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 763 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
|...|++..+.... +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+++...
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888888875322 4567777777788888888888888888875 45432222222234456778888888865433
Q ss_pred cCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhc---CCCCC-Ccc
Q 001911 843 TYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTS---FSSNS-AAS 918 (997)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~-~~~ 918 (997)
.. .|+. |. ....+...|++.++ +.++.+.+ ..+.. +..
T Consensus 194 ~~----------------------------------~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~ 235 (296)
T PRK11189 194 KL----------------------------------DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERL 235 (296)
T ss_pred hC----------------------------------Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHH
Confidence 11 1221 22 22333345555444 34444432 11110 113
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCC
Q 001911 919 RNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-E-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 919 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~y~~~g~ 969 (997)
..+|..++..+.+.|++++|+..|+++++ ..| | ++.-..++......++
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~--~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALA--NNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHHHhh
Confidence 46788899999999999999999999998 444 5 4444455555444333
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=5.7e-08 Score=102.70 Aligned_cols=228 Identities=17% Similarity=0.056 Sum_probs=161.0
Q ss_pred HHhcCChHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 001911 649 LCKVHKVREAHDLLDAMSVVG-CEPN--NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRL 725 (997)
Q Consensus 649 ~~~~g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 725 (997)
....+..+.+...+.+++... ..|+ ...|..+...|...|+.++|...|++.++..+. +...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCH
Confidence 444567788888888888643 1222 456778888899999999999999999998654 678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001911 726 DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 805 (997)
++|...|++.++.. +.+...|..+...+...|++++|.+.|++..+.. |+..........+...++.++|.+.|.+.
T Consensus 115 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 115 DAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999999998764 3356788888888999999999999999998863 33222222222344578899999999776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-Chhh
Q 001911 806 SSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPA 884 (997)
Q Consensus 806 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~ 884 (997)
.... .|+...+ .......|+..++ ..++.+.+.. ...+ ...| ...+
T Consensus 192 ~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~-~~~~---------------------------~l~~~~~ea 238 (296)
T PRK11189 192 YEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGA-TDNT---------------------------ELAERLCET 238 (296)
T ss_pred HhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcC-CCcH---------------------------HHHHHHHHH
Confidence 6432 3332222 2333345666554 3555544321 0000 0012 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
|..++..+.+.|++++|+..|+++.+.+|
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999998764
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=6.2e-08 Score=91.23 Aligned_cols=196 Identities=17% Similarity=0.080 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHC 824 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~ 824 (997)
+...|.-+|...|+...|.+-+++..+.... +..+|..+...|.+.|+.+.|.+.|++.+.. .| +..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 4455667788888888888888888886433 5667888888888888888888888888875 55 567788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001911 825 CASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 825 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
|..|++++|...|++..... . ......+|..++.+..++|+.+.|.+.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P--~------------------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~ 161 (250)
T COG3063 114 CAQGRPEEAMQQFERALADP--A------------------------------YGEPSDTLENLGLCALKAGQFDQAEEY 161 (250)
T ss_pred HhCCChHHHHHHHHHHHhCC--C------------------------------CCCcchhhhhhHHHHhhcCCchhHHHH
Confidence 88888899888888876531 0 001123677788888888999999999
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
+++.++.+|+ .+.....+.....+.|++-.|...+++....+. +..+.....+++-.+.|+-+-|-++=..+
T Consensus 162 l~raL~~dp~---~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 162 LKRALELDPQ---FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHhCcC---CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9998888876 667777888888888999889888888877653 77777888888888888877766654443
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=9e-07 Score=93.75 Aligned_cols=104 Identities=21% Similarity=0.193 Sum_probs=63.1
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCH
Q 001911 456 QCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPD-VYTYTILIDNFCKAGLI 534 (997)
Q Consensus 456 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 534 (997)
.+.+..|+++.|+..|-+.+... +++.+.|+.-..+|...|++++|.+=-.+-.+. .|+ ...|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45566677777777777766653 345666666677777777777766655444443 344 45666666666666777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 535 EQARNWFDEMVKEGCDPNVVTYTALIHAY 563 (997)
Q Consensus 535 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 563 (997)
++|+.-|.+=++.... +...++-+..++
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 7777777666654322 444444444444
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=5.9e-07 Score=89.04 Aligned_cols=209 Identities=13% Similarity=0.116 Sum_probs=138.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKV 795 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 795 (997)
+..+...|+...|+.....+++-. +-|...+..-..+|...|.+..|+.-++........ +..++--+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhH
Confidence 344566788888888888888753 456677777788888889998888877776654322 555555566777888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhcc
Q 001911 796 DKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGK 875 (997)
Q Consensus 796 ~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 875 (997)
+.++.-.+++++. .||......... .+.+..+.++.|.+.. - .+.+..++..-+....
T Consensus 240 ~~sL~~iRECLKl--dpdHK~Cf~~YK------klkKv~K~les~e~~i-----------e---~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 240 ENSLKEIRECLKL--DPDHKLCFPFYK------KLKKVVKSLESAEQAI-----------E---EKHWTECLEAGEKVLK 297 (504)
T ss_pred HHHHHHHHHHHcc--CcchhhHHHHHH------HHHHHHHHHHHHHHHH-----------h---hhhHHHHHHHHHHHHh
Confidence 9998888888875 676543322222 2333344444443310 0 0111122222222221
Q ss_pred CC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 876 TD---SVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 876 ~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
+. ..-....+..+..+|...|++-+|++..+++++..|. |..++.--+.+|.....|+.|+.-|+++.+ .+|
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~---dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~ 372 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD---DVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNE 372 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCc
Confidence 11 1111234556667888899999999999999988764 788888888899888999999999999998 667
Q ss_pred C
Q 001911 953 E 953 (997)
Q Consensus 953 ~ 953 (997)
+
T Consensus 373 s 373 (504)
T KOG0624|consen 373 S 373 (504)
T ss_pred c
Confidence 5
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.2e-07 Score=95.48 Aligned_cols=353 Identities=15% Similarity=0.094 Sum_probs=238.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-H
Q 001911 596 DGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN-N 674 (997)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~ 674 (997)
++.+..|+++.|+.+|.+..... ++|.+.|..-..+|++.|++++|++=-.+-.+. .|+ .
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-----------------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~ 70 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-----------------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWA 70 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-----------------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchh
Confidence 45678899999999999998764 678889999999999999999998766666554 454 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-------------------------------
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK------------------------------- 723 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------------------------------- 723 (997)
..|+....++.-.|++++|+.-|.+-++..+. +...++.+..++....
T Consensus 71 kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 71 KGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYV 149 (539)
T ss_pred hHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHH
Confidence 67888999999999999999999988876533 4455555555541110
Q ss_pred --------------------CHHHHHHHHHHHH-----hC-------CCCC---------C-------------HHHHHH
Q 001911 724 --------------------RLDLALKVISKML-----ED-------SYAP---------N-------------VVIYTE 749 (997)
Q Consensus 724 --------------------~~~~A~~~~~~~~-----~~-------~~~~---------~-------------~~~~~~ 749 (997)
++..|.-.+.... .. +..| . ..-...
T Consensus 150 ~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 150 KILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 0001111000000 00 0011 0 011223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--C----HHHHHHHHHH
Q 001911 750 MIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP--N----FVTYRVLINH 823 (997)
Q Consensus 750 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~----~~~~~~l~~~ 823 (997)
+.+..-+..++..|.+-+....+.. -+..-++....+|...|.+.++...-....+.|-.- + ...+..+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 4445555566677777777666653 255556666677888888888777777666654221 1 1122234456
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHH
Q 001911 824 CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEVAL 902 (997)
Q Consensus 824 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 902 (997)
|.+.++++.|..++.+....+..++... . .+..+.+.+..+...-. .|... -...-++.+.+.|++.+|+
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls------~-lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLS------K-LKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHH------H-HHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHH
Confidence 7778889999999988766543322111 1 11222222222222111 22221 2334578899999999999
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
..|.++++..|. |...|.+.+.+|.+.|.+..|++-.+..++ +.|+ ...|..-+.++....+|++|.+.|.+.+
T Consensus 379 ~~YteAIkr~P~---Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 379 KHYTEAIKRDPE---DARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHhcCCc---hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876 999999999999999999999999999999 6787 7789999999999999999999999877
Q ss_pred ccC
Q 001911 982 HTD 984 (997)
Q Consensus 982 ~~~ 984 (997)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 765
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=3.1e-08 Score=105.43 Aligned_cols=223 Identities=14% Similarity=0.064 Sum_probs=161.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 001911 753 GLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLD 831 (997)
Q Consensus 753 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~ 831 (997)
-+.+.|++.+|.-.|+..+...+. +...|--|.......++-..|+..++++++. .| |......|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHH
Confidence 355667777777777777765333 5566666666666677777777777777764 45 5667777777777777777
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHH------HhHh--HhHHHHHHHHHHh-ccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 001911 832 EAHNLLEEMKQTYWPTHVAGYRKVI------EGFS--REFIVSLGLVNEM-GKTDSVPIVPAYRILIDHYIKAGRLEVAL 902 (997)
Q Consensus 832 ~A~~~~~~m~~~~~~~~~~~~~~~~------~~~~--~~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 902 (997)
+|++.++.......+-.-......- +++. .......++|.++ ...+..++......|+.+|.-.|+++.|+
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7777777765432110000000000 0111 1122233444444 34455577788899999999999999999
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
..|+.++...|+ |...|+.|+..+....+.++|+..|.++++ +.|. +-+.+.|+-.|.-.|.|+||.+.+=.++
T Consensus 451 Dcf~~AL~v~Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPN---DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999998887 999999999999999999999999999999 8998 6789999999999999999999987665
Q ss_pred cc
Q 001911 982 HT 983 (997)
Q Consensus 982 ~~ 983 (997)
.+
T Consensus 526 ~m 527 (579)
T KOG1125|consen 526 SM 527 (579)
T ss_pred Hh
Confidence 54
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.00 E-value=7.9e-07 Score=98.13 Aligned_cols=319 Identities=11% Similarity=-0.021 Sum_probs=202.4
Q ss_pred CceeHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 001911 638 NVYTYGALIDGLCKVHKVREAHDLLDAMSVVGC-EPNNI-VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSL 715 (997)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 715 (997)
....|..+...+...|+.+.+.+.+........ .++.. ........+...|++++|...+++..+..+. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 344566666777778888887777776654331 22321 2222334567789999999999999987543 4434432
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 001911 716 IDRLFK----DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK 791 (997)
Q Consensus 716 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 791 (997)
...+.. .+..+.+.+.+..... ..+........+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 222322 4555555555554211 222233455566778889999999999999999874 3356778888899999
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 792 VGKVDKCLELLRQMSSKGC-APNF--VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 792 ~g~~~~A~~l~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
.|++++|+.++++...... .|+. ..|..+...+...|++++|..++++........
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~--------------------- 219 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES--------------------- 219 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC---------------------
Confidence 9999999999999887521 2332 346678899999999999999999975321100
Q ss_pred HHHHhccCCCCCChh-h--HHHHHHHHHhcCCHHHHHHH---HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 001911 869 LVNEMGKTDSVPIVP-A--YRILIDHYIKAGRLEVALEL---HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELY 942 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~-~--~~~l~~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 942 (997)
+... . ...+...+...|..+.+.+. ........++ ..........+.++...|+.++|...+
T Consensus 220 -----------~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 220 -----------DPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred -----------ChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 0000 0 00223333444433333332 1111111111 112233335667778889999999999
Q ss_pred HHHHHcCCC-------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccchhhhh
Q 001911 943 VDMIRKDGS-------P-ELSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQEEER 993 (997)
Q Consensus 943 ~~~~~~~~~-------p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 993 (997)
+.+...... . ........+.++...|++++|...+...........++.-|
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq 346 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQ 346 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 888663211 1 24566788889999999999999999998887777776544
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=3.3e-07 Score=88.94 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=67.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 001911 717 DRLFKDKRLDLALKVISKMLED-SYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKV 795 (997)
Q Consensus 717 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 795 (997)
..+.+.++.+.|.+.+-.|--. ....|++|...+.-.-. .+++-+..+-+.-+.+..+- ...||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHH
Confidence 3456778888888877776422 23456677666543322 24454555545555554343 356777777788888888
Q ss_pred HHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 796 DKCLELLRQMSSKGCA-PNFVTYRVLINHCCASGLLDEAHNLLEEM 840 (997)
Q Consensus 796 ~~A~~l~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 840 (997)
+-|.+++.+-...... .+...|+.|=..-...-..++|.+=++.+
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8887776553322111 12333332222223445667776666554
No 99
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.96 E-value=5.6e-07 Score=84.94 Aligned_cols=199 Identities=14% Similarity=0.030 Sum_probs=168.2
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLF 720 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 720 (997)
+...|.-+|...|+...|.+-+++.++.+ +.+..+|..+...|.+.|..+.|.+.|++.++..+. +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34556668999999999999999999887 667788999999999999999999999999998755 6778888888899
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 001911 721 KDKRLDLALKVISKMLEDSYA-PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCL 799 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 799 (997)
..|++++|...|++....-.- --..+|..+.-+..+.|+.+.|...|++..+.... .+.+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 999999999999999876322 23468889999999999999999999999987433 4556778888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 800 ELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 800 ~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
.+++.....|. ++..+....|..-...|+.+.+.++=.++...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999988764 88888888899999999999888877766554
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.7e-07 Score=100.02 Aligned_cols=248 Identities=15% Similarity=0.088 Sum_probs=153.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001911 685 CKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAY 764 (997)
Q Consensus 685 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 764 (997)
.+.|++.+|.-.|+..++..+. +...|.-|.......++-..|+..+.+.++.. +.|......|...|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 4445555555555555555433 44555555555555555555555555555543 234445555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 001911 765 KVMLMMEEKGCYPNVVTYTAMI-----------DGFGKVGKVDKCLELLRQMSS-KGCAPNFVTYRVLINHCCASGLLDE 832 (997)
Q Consensus 765 ~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~ 832 (997)
+.|..-+...++ |..+. +.+.....+....++|-++.. .+..+|......|.-.|--.|++++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 555555432110 00000 111112223344455555544 4445678888888888888888888
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 001911 833 AHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSF 911 (997)
Q Consensus 833 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 911 (997)
|...|+...+.. |+ ...|+-|+..++...+.++|+..|+++++.
T Consensus 449 aiDcf~~AL~v~-----------------------------------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 449 AVDCFEAALQVK-----------------------------------PNDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred HHHHHHHHHhcC-----------------------------------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 888888887643 44 447888888888888889999999998888
Q ss_pred CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 912 SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDG---SP------ELSTFVHLIKGLIRVNKWEEALQLS 977 (997)
Q Consensus 912 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p------~~~~~~~l~~~y~~~g~~~eA~~~~ 977 (997)
.|+ -..+...|+-+|...|.|++|.+.|-.++..-- .+ +-.+|..|-.++...++.+-+.+..
T Consensus 494 qP~---yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 494 QPG---YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred CCC---eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 876 666777788888888999988888887765221 11 1247777777777777766554443
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=4.3e-06 Score=81.40 Aligned_cols=236 Identities=16% Similarity=0.078 Sum_probs=166.1
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHH-HHHHH
Q 001911 168 YNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNAL-IQVFL 246 (997)
Q Consensus 168 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 246 (997)
+.+.+..+.+..++..|.+++..-.+..+.. ...++.|..+|....+|..|-++++++.. ..|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~-rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRS-RAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 3444555667777888888777665554432 34689999999999999999999999876 34554444322 35677
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCchhHHHHH----HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 001911 247 RADRLDTAYLVYREMLDAGFSMDGFTLGCFA----YSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAM 322 (997)
Q Consensus 247 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 322 (997)
+.+.+..|.++...|... ++ ..+-.+ ......|++..+..+.++.+.+-+..+.+-..-.+.+.|++++|+
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 888999999999888653 22 222222 234456888889999998655556666666666788999999999
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-------------CCH---------------HH
Q 001911 323 DLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCY-------------PSP---------------RI 374 (997)
Q Consensus 323 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-------------~~~---------------~~ 374 (997)
+-|+...+.+---....|+..+.-| +.|+++.|.+...+++++|+. ||+ ..
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 9999998766555678899888665 789999999999999988742 111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHH
Q 001911 375 FHSLIHAYCRSGDYSYAYKLLSKMRK-CGFQPGYVVYNI 412 (997)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ 412 (997)
+|.-...+.+.|+++.|.+.+-+|.- ..-..|++|..-
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 33333445678999999998888852 223445555543
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=1.9e-05 Score=78.71 Aligned_cols=316 Identities=16% Similarity=0.137 Sum_probs=201.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-
Q 001911 517 DVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTAL---IHAYLKARKPSQANELFETMLSKGCIPNIVTFT- 592 (997)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l---l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~- 592 (997)
++.-.--+...+...|++..|+.-|...++. |+..|.++ ...|...|+..-|+.-+...++. +||...-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444455677777788888888888888765 33344433 44677778888888877777765 67654322
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 001911 593 ALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEP 672 (997)
Q Consensus 593 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 672 (997)
.-...+.+.|.+++|..-|+.+.... |+..+ ...++.+.- ..+++
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~------------------~s~~~---~~eaqskl~-------~~~e~------- 155 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHE------------------PSNGL---VLEAQSKLA-------LIQEH------- 155 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcC------------------CCcch---hHHHHHHHH-------hHHHH-------
Confidence 22345677888888888888777642 22111 111111110 11111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMID 752 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 752 (997)
......+..+...|+...|+.+...+++..+ -|...|..-..+|...|.+..|+.-++...+.. ..+...+-.+-.
T Consensus 156 --~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~ 231 (504)
T KOG0624|consen 156 --WVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQ 231 (504)
T ss_pred --HHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHH
Confidence 1112233345566777788888877777642 366667777777778888888877777666543 234444445556
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHH---------HHHHhccCCHHHHHHHHHHHHhCCCCCC---HHH
Q 001911 753 GLIKVGKTEEAYKVMLMMEEKGCYPNVVT----YTAM---------IDGFGKVGKVDKCLELLRQMSSKGCAPN---FVT 816 (997)
Q Consensus 753 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~ 816 (997)
.+...|+.+.++...++-... .||... |..| +......++|.++++-.+...+...... ...
T Consensus 232 L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~ 309 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNG 309 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeee
Confidence 666677777777777766653 444332 1111 1223456788888888888887632211 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhc
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKA 895 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 895 (997)
+..+-.++...|++-+|+....++.+. .|+ ..++..-+.+|.-.
T Consensus 310 ~r~~c~C~~~d~~~~eAiqqC~evL~~-----------------------------------d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 310 FRVLCTCYREDEQFGEAIQQCKEVLDI-----------------------------------DPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred eheeeecccccCCHHHHHHHHHHHHhc-----------------------------------CchHHHHHHHHHHHHhhh
Confidence 445556777889999999999888764 355 66888888999999
Q ss_pred CCHHHHHHHHHHHhcCCCC
Q 001911 896 GRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~ 914 (997)
..+++|+.-|+++.+.++.
T Consensus 355 E~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHHHhcCcc
Confidence 9999999999999998653
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=1.9e-07 Score=96.91 Aligned_cols=253 Identities=16% Similarity=0.131 Sum_probs=167.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 001911 648 GLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDL 727 (997)
Q Consensus 648 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 727 (997)
-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445788888886555 222221223445556778888889877544 3333332 5666666666655544456666
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001911 728 ALKVISKMLEDSYA-PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS 806 (997)
Q Consensus 728 A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 806 (997)
++.-+++....... .+..........+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666555443322 23333333335566789999999888653 266777778888999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh
Q 001911 807 SKGCAPNFVTYRVLINHCC----ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV 882 (997)
Q Consensus 807 ~~g~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 882 (997)
+. ..| .+...+..++. -.+.+.+|..+|+++.+++ .++.
T Consensus 159 ~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~----------------------------------~~t~ 201 (290)
T PF04733_consen 159 QI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF----------------------------------GSTP 201 (290)
T ss_dssp CC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS------------------------------------SH
T ss_pred hc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc----------------------------------CCCH
Confidence 75 344 33333444333 2347899999999987754 3556
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCC
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKI-DKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~ 953 (997)
..++.++.++...|++++|.++++++...+|+ ++.+..+++-+....|+. +.+.++++++.. ..|+
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~---~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~ 268 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPN---DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPN 268 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC---HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCC
Confidence 67888999999999999999999999988876 888888888888888887 778888888887 5676
No 104
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=2.7e-06 Score=89.57 Aligned_cols=216 Identities=13% Similarity=0.040 Sum_probs=148.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH--HHH
Q 001911 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVG-KTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKV--DKC 798 (997)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A 798 (997)
.++.++|+.+.+++++.. +-+..+|+....++...| ++++++..++++.+...+ +..+|+.-...+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 456667777777776643 234455666656666666 567888888888776444 555666555555555653 677
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCC
Q 001911 799 LELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTD 877 (997)
Q Consensus 799 ~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 877 (997)
+.+++++++. .| |..+|.....++...|++++|+..++++.+..
T Consensus 128 l~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--------------------------------- 172 (320)
T PLN02789 128 LEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--------------------------------- 172 (320)
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---------------------------------
Confidence 8888888875 45 67888888888888888888888888887654
Q ss_pred CCCChhhHHHHHHHHHhc---C----CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc----CCHHHHHHHHHHHH
Q 001911 878 SVPIVPAYRILIDHYIKA---G----RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA----RKIDKAFELYVDMI 946 (997)
Q Consensus 878 ~~p~~~~~~~l~~~~~~~---g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~ 946 (997)
..+..+|+..+.++.+. | ..+++++...+++...|. |..+|+.+...+... ++..+|.+...++.
T Consensus 173 -~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~---N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 173 -VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR---NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred -CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC---CcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 12333555555444433 2 235678888888888776 889999998888773 45577888888877
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcC------------------CHHHHHHHHHHh
Q 001911 947 RKDGSPE-LSTFVHLIKGLIRVN------------------KWEEALQLSYSI 980 (997)
Q Consensus 947 ~~~~~p~-~~~~~~l~~~y~~~g------------------~~~eA~~~~~~~ 980 (997)
. ..|+ ..++..|+++|++.. ..++|.++++.+
T Consensus 249 ~--~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 249 S--KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred c--ccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 7 4564 778889999998642 236788888776
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.81 E-value=1.3e-05 Score=88.35 Aligned_cols=198 Identities=11% Similarity=0.031 Sum_probs=103.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH--HhHHHHHHHHH
Q 001911 644 ALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN-PNV--YTYGSLIDRLF 720 (997)
Q Consensus 644 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~~~~~li~~~~ 720 (997)
.+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.... |+. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445566666666666666666554 344555566666666667777777666666654321 121 23445566666
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHHcCCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHhcc
Q 001911 721 KDKRLDLALKVISKMLEDSY-APNVVIY-T--EMIDGLIKVGKTEEAYKV--MLMMEEKGC--YPNVVTYTAMIDGFGKV 792 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~A~~~--~~~m~~~g~--~p~~~~~~~li~~~~~~ 792 (997)
..|++++|..++++...... .+..... + .++.-+...|....+..+ +........ ............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 67777777777766643221 1111111 1 122222233332222222 111111100 11112222455667788
Q ss_pred CCHHHHHHHHHHHHhCCCC-------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 793 GKVDKCLELLRQMSSKGCA-------P-NFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 793 g~~~~A~~l~~~m~~~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
|+.++|..+++.+...... . .........-++...|++++|...+.+...
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888887653211 0 122233334456688999999988887654
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=4.6e-05 Score=95.70 Aligned_cols=161 Identities=14% Similarity=0.049 Sum_probs=102.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHH
Q 001911 682 DGFCKVGKLDEAQMVFSKMLEHGCNPNV----YTYGSLIDRLFKDKRLDLALKVISKMLED----SY-APNVVIYTEMID 752 (997)
Q Consensus 682 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~ 752 (997)
..+...|++++|...++...+.-...+. ...+.+...+...|++++|...+++.... |. ......+..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3455678888888888777653211121 23445555667788888888888777642 11 111234455666
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHH
Q 001911 753 GLIKVGKTEEAYKVMLMMEEK----GCY--P-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK--GCAP--NFVTYRVLI 821 (997)
Q Consensus 753 ~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~~~~~~~l~ 821 (997)
.+...|++++|...+++..+. +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 777889999998888776542 211 1 2233445556677789999999888887652 1122 234455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 001911 822 NHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~ 842 (997)
..+...|++++|...+++...
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777889999999998888754
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=1e-06 Score=90.61 Aligned_cols=171 Identities=12% Similarity=0.049 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 001911 778 NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYR 853 (997)
Q Consensus 778 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 853 (997)
....+..++..+...|++++|...|+++... .|+ ..++..+..++...|++++|...++++.+... .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~------ 102 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-N------ 102 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-C------
Confidence 4556677777788888888888888888775 343 24667788888888888888888888876431 0
Q ss_pred HHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhc--------CCHHHHHHHHHHHhcCCCCCCcchhhH--
Q 001911 854 KVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKA--------GRLEVALELHEEMTSFSSNSAASRNST-- 922 (997)
Q Consensus 854 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~-- 922 (997)
.|. ..++..++.++... |++++|++.++++....|.........
T Consensus 103 -------------------------~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 157 (235)
T TIGR03302 103 -------------------------HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR 157 (235)
T ss_pred -------------------------CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence 011 11345555665544 788889999998888776532111111
Q ss_pred ------------HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 923 ------------LLLIESLSLARKIDKAFELYVDMIRKDG-SPE-LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 923 ------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..++..+...|++++|+..++++++..- .|. ..++..++.+|...|++++|..+++.+..
T Consensus 158 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 158 MDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2456777888999999999999998421 232 57899999999999999999999887754
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=1.2e-06 Score=95.89 Aligned_cols=217 Identities=14% Similarity=0.122 Sum_probs=117.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 001911 714 SLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 714 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 793 (997)
.+...+...|-...|..++++.. .|...+.+|+..|+..+|..+..+..++ +||+..|..+.+.....-
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 34444555555555555555432 3444455555555555555555554442 445555555555544444
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 794 KVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 794 ~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
-+++|.++++....+ .-..+.....+.++++++.+.++.-.+.+
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n----------------------------- 515 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN----------------------------- 515 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-----------------------------
Confidence 455555555443321 11111122223455555555555433321
Q ss_pred ccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 874 GKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 874 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
+-...+|..++.+..+.++++.|.+.|.......|+ +...|+++..+|.+.|+-.+|...++++.+-+ ..+
T Consensus 516 -----plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd---~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~ 586 (777)
T KOG1128|consen 516 -----PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD---NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQH 586 (777)
T ss_pred -----ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC---chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCC
Confidence 112345666666666677777777777776666665 66677777777777777777777777766633 222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 954 LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 954 ~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
..+|....-...+.|.|++|++.+.++......
T Consensus 587 w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 587 WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred CeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 445556666666667777777777666554433
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=4.9e-05 Score=95.46 Aligned_cols=385 Identities=11% Similarity=0.020 Sum_probs=226.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 001911 523 ILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAG 602 (997)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 602 (997)
.....+...|++.+|........... .-..............|+++.+...++.+.......+..........+...|
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 33444556666666655443321100 0000111112233445777776666665422111112222334455566788
Q ss_pred CHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCC--ceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HH
Q 001911 603 DIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPN--VYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNN----IV 676 (997)
Q Consensus 603 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~ 676 (997)
++++|...+............ ...+. ......+...+...|++++|...+++....-...+. ..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~----------~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNI----------ELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred CHHHHHHHHHHHHHhccccCc----------ccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 999998888877543210000 00111 111222334556789999999999988763212222 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CH
Q 001911 677 YDALIDGFCKVGKLDEAQMVFSKMLEH----GC-NPNVYTYGSLIDRLFKDKRLDLALKVISKMLED----SYA--P-NV 744 (997)
Q Consensus 677 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~ 744 (997)
.+.+...+...|++++|...+.+.... |. .+...++..+...+...|+++.|...+++..+. +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 566677778899999999999888753 11 111234556677788999999999998887642 211 1 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCC--CHHH
Q 001911 745 VIYTEMIDGLIKVGKTEEAYKVMLMMEEK--GCYP--NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK--GCAP--NFVT 816 (997)
Q Consensus 745 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~~~~ 816 (997)
..+..+...+...|++++|...+.+.... ...+ ....+..+...+...|++++|.+.+.+.... .... ....
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 34555666777889999999999887653 1112 2334455666778899999999999887542 1111 1111
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 001911 817 Y--RVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK 894 (997)
Q Consensus 817 ~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 894 (997)
. ...+..+...|+.+.|..++.......... . ......+..++.++..
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~---~---------------------------~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN---N---------------------------HFLQGQWRNIARAQIL 703 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc---c---------------------------hhHHHHHHHHHHHHHH
Confidence 1 112244456789999988876643311000 0 0001123457788899
Q ss_pred cCCHHHHHHHHHHHhcCCC---CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 895 AGRLEVALELHEEMTSFSS---NSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 895 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
.|++++|...++++..... .......++..++.++...|+.++|...+.++++..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999875311 111123466778888899999999999999998853
No 110
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=3.1e-05 Score=81.62 Aligned_cols=224 Identities=14% Similarity=0.019 Sum_probs=152.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--H
Q 001911 685 CKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK-RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT--E 761 (997)
Q Consensus 685 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~ 761 (997)
...++.++|+....++++..+. +..+|+.-...+...| ++++++..++++.+.. +.+..+|+.....+.+.|+. +
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 3456777888888888776543 4445555555555666 5788888888888764 34556677666566666653 6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CH----HHHH
Q 001911 762 EAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASG---LL----DEAH 834 (997)
Q Consensus 762 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~----~~A~ 834 (997)
++..+++++.+...+ |..+|+....++.+.|+++++++.+.++++.+ .-|...|+....++.+.| .. +++.
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 778888888876554 77888888888888899999999999999864 225667777666665542 22 3444
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhc----CCHHHHHHHHHHHh
Q 001911 835 NLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKA----GRLEVALELHEEMT 909 (997)
Q Consensus 835 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----g~~~~A~~~~~~~~ 909 (997)
.+..++... .|+ ...|+.+..++... ++..+|.+.+.++.
T Consensus 204 ~y~~~aI~~-----------------------------------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 204 KYTIDAILA-----------------------------------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHh-----------------------------------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 444444332 243 45788888887773 45677989988887
Q ss_pred cCCCCCCcchhhHHHHHHHHHhcC------------------CHHHHHHHHHHHHHcCCCC
Q 001911 910 SFSSNSAASRNSTLLLIESLSLAR------------------KIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 910 ~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~~~~~~p 952 (997)
...|. +..++..|+..|+... ..++|.++++.+.+ ..|
T Consensus 249 ~~~~~---s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~--~d~ 304 (320)
T PLN02789 249 SKDSN---HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV--ADP 304 (320)
T ss_pred cccCC---cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh--hCc
Confidence 76554 7788888888887642 24678888888743 455
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=3.2e-06 Score=86.88 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY-P-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN----FVT 816 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~ 816 (997)
....+..++..+.+.|++++|...|+++...... | ...++..+...+...|++++|+..++++.+. .|+ ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 3445566666677777777777777777664211 1 1135566667777777777777777777765 232 124
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHH
Q 001911 817 YRVLINHCCAS--------GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRIL 888 (997)
Q Consensus 817 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 888 (997)
+..+..++... |++++|.+.++++...+ |........+... ..+... . ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~------------~~~~~~---~-~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRM------------DYLRNR---L-AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHH------------HHHHHH---H-HHHHHHH
Confidence 44455555543 78899999999887653 3332222211110 000000 0 0112357
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
+..|.+.|++++|+..++++.+..|+.+.....+..++.++.+.|++++|...++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 788999999999999999999887765556789999999999999999999999988773
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=1.2e-06 Score=90.96 Aligned_cols=249 Identities=14% Similarity=0.063 Sum_probs=162.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 683 GFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEE 762 (997)
Q Consensus 683 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 762 (997)
-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3455688888886665 222222223445566778888999877654 3333333 5666665555544433345555
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 763 AYKVMLMMEEKGCY-PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 763 A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 841 (997)
+..-+++....... .+..........+...|++++|++++.+. .+.......+.+|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555443333222 23333333334567889999999887542 467778888999999999999999999997
Q ss_pred hcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHH----HHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 001911 842 QTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILI----DHYIKAGRLEVALELHEEMTSFSSNSAA 917 (997)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 917 (997)
+.. .|. +...|+ +.+.-.+++.+|.-+|+++.+..+.
T Consensus 159 ~~~-----------------------------------eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~--- 199 (290)
T PF04733_consen 159 QID-----------------------------------EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS--- 199 (290)
T ss_dssp CCS-----------------------------------CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----
T ss_pred hcC-----------------------------------CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC---
Confidence 632 222 222233 2222334799999999999887543
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH-HHHHHHHHHhhcc
Q 001911 918 SRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKW-EEALQLSYSICHT 983 (997)
Q Consensus 918 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~-~eA~~~~~~~~~~ 983 (997)
++.+.+.++.+....|++++|.+.++++.+ ..|+ +.+...++-+..-.|+. +.+.+++.++...
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 778888899999999999999999999887 5574 78888999999999998 6677788777644
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.61 E-value=3.4e-06 Score=82.69 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=74.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHH
Q 001911 792 VGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVN 871 (997)
Q Consensus 792 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 871 (997)
.++.++++..+++.++.. +.|...|..+...|...|++++|...+++..+..
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------------------------- 103 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--------------------------- 103 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------
Confidence 555666666666666542 2256667777777777777777777776665532
Q ss_pred HhccCCCCCChhhHHHHHHH-HHhcCC--HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 872 EMGKTDSVPIVPAYRILIDH-YIKAGR--LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 872 ~~~~~~~~p~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+.+...+..++.+ +...|+ .++|.++++++.+.+|+ +..++..++..+...|++++|+..|+++++
T Consensus 104 -------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~---~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 104 -------GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN---EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred -------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1233455556664 355555 46777777777776655 666677777777777777777777777766
No 114
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=0.0027 Score=72.14 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001911 712 YGSLIDRLFKDKRLD---LALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG 788 (997)
Q Consensus 712 ~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 788 (997)
.+.|++.+-+.++.. +|+-+++.-.... +.|..+--.+|..|+-.|-+..|.+++..+.-+.+.-|..-|. +...
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 445666666666654 3444444444332 2334444456677777777777777777776655555554443 2344
Q ss_pred HhccCCHHHHHHHHHHHHh
Q 001911 789 FGKVGKVDKCLELLRQMSS 807 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~ 807 (997)
+...|++..+...++....
T Consensus 517 ~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHhcccchhHHHHHHHHHH
Confidence 5566777777777666554
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=0.0027 Score=72.14 Aligned_cols=192 Identities=15% Similarity=0.150 Sum_probs=108.4
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQA 537 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 537 (997)
+.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..+++..... .|+......+..+|.+-+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888777777655433 6777777778888888888888888887765 45667777777788887776554
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-Ch---------hHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHH
Q 001911 538 RNWFDEMVKEGCDPNVVTYTALIHAYLKAR-KP---------SQANELFETMLSKG-CIPNIVTFTALIDGHCKAGDIER 606 (997)
Q Consensus 538 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~---------~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~ 606 (997)
.+.--+|-+. .+-+...+-++++.+.+.. .. .-|.+.++.+.+.+ -.-+..-.......+-..|++++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 4443333332 2224444445555544331 11 12444444444433 11111112222333445666777
Q ss_pred HHHHHHH-HHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 001911 607 ACRIYAR-MKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVG 669 (997)
Q Consensus 607 A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 669 (997)
|..++.. ..+.. ..-+...-+.-++.+...+++.+..++-.++...|
T Consensus 209 al~~l~~~la~~l----------------~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 209 ALEFLAITLAEKL----------------TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhc----------------cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 7777632 22211 12222233345566666777777777777766665
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=8.1e-08 Score=62.74 Aligned_cols=33 Identities=36% Similarity=0.760 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 001911 297 EFVPDTVLYTKMISGLCEASLFEEAMDLLNRMR 329 (997)
Q Consensus 297 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (997)
|+.||+++||+||.+||+.|++++|+++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 456777777777777777777777777777763
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=2.3e-06 Score=79.25 Aligned_cols=122 Identities=12% Similarity=-0.033 Sum_probs=87.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 800 ELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 800 ~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
.++++.++. .|+. +..+...+...|++++|...|+...... +
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------------P 55 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ----------------------------------P 55 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------------C
Confidence 345555543 3443 4456777778888888888887776532 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV 958 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 958 (997)
.+...|..++.++...|++++|+..|+++....|+ +...+..++.++...|++++|+..|+++++ ..|+ +..+.
T Consensus 56 ~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~ 130 (144)
T PRK15359 56 WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---HPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSE 130 (144)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHH
Confidence 34557777888888888888888888888887765 778888888888888888888888888888 6675 56666
Q ss_pred HHHHHH
Q 001911 959 HLIKGL 964 (997)
Q Consensus 959 ~l~~~y 964 (997)
.++.+.
T Consensus 131 ~~~~~~ 136 (144)
T PRK15359 131 IRQNAQ 136 (144)
T ss_pred HHHHHH
Confidence 665554
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.52 E-value=1.2e-05 Score=93.39 Aligned_cols=134 Identities=10% Similarity=0.056 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 001911 775 CYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYR 853 (997)
Q Consensus 775 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 853 (997)
...+...+..|.....+.|.+++|..+++.+.+. .|+ ......++.++.+.+++++|+..+++..+..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------- 150 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--------- 150 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC---------
Confidence 3446778888888888889999999999988885 674 6677788888888999999988888877642
Q ss_pred HHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc
Q 001911 854 KVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA 932 (997)
Q Consensus 854 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 932 (997)
|+ ......++.++.+.|++++|+++|+++....|+ +..++..++.++...
T Consensus 151 --------------------------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~---~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 151 --------------------------SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE---FENGYVGWAQSLTRR 201 (694)
T ss_pred --------------------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHc
Confidence 54 446777888888899999999999998875543 678888888888888
Q ss_pred CCHHHHHHHHHHHHHc
Q 001911 933 RKIDKAFELYVDMIRK 948 (997)
Q Consensus 933 g~~~~A~~~~~~~~~~ 948 (997)
|+.++|...|+++++.
T Consensus 202 G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 202 GALWRARDVLQAGLDA 217 (694)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998874
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=3.6e-05 Score=84.83 Aligned_cols=219 Identities=13% Similarity=0.076 Sum_probs=161.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001911 671 EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEM 750 (997)
Q Consensus 671 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 750 (997)
+|-...-..+...+...|-...|..+|++.. .|.-+|.+|...|+..+|..+..+-.++ +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444566777788888888888887654 3556677888888888888888887773 6888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 001911 751 IDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGL 829 (997)
Q Consensus 751 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 829 (997)
++......-+++|.++++..... .-..+.......++++++.+.|+.-.+. .| ...+|..+..+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhh
Confidence 88777666777888877765432 1112222234478888888888887764 44 67788888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 830 LDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEM 908 (997)
Q Consensus 830 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 908 (997)
++.|.+.|...... .|+ ...|+++..+|.+.|+..+|...++++
T Consensus 535 ~q~av~aF~rcvtL-----------------------------------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL-----------------------------------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred hHHHHHHHHHHhhc-----------------------------------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 88888888776542 355 447888888888888888888888888
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 909 TSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 909 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.+.+- .+..+|.+.+....+.|.+++|++.|.++..
T Consensus 580 lKcn~---~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 580 LKCNY---QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCC---CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 87652 3667788888788888888888888888876
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=2.4e-05 Score=76.02 Aligned_cols=158 Identities=14% Similarity=0.062 Sum_probs=107.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001911 748 TEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCAS 827 (997)
Q Consensus 748 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~ 827 (997)
..+-..+...|+-+.+..+........ +-|....+.++....+.|++.+|+..+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445556666677777777766654432 2255555667777777788888888887777642 44777788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 828 GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEE 907 (997)
Q Consensus 828 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 907 (997)
|++++|...+.+..+.. ..+...+++|+..|.-.|+.+.|..++..
T Consensus 148 Gr~~~Ar~ay~qAl~L~----------------------------------~~~p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 148 GRFDEARRAYRQALELA----------------------------------PNEPSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred cChhHHHHHHHHHHHhc----------------------------------cCCchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 88888877777766532 11223566777777777888888888777
Q ss_pred HhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 908 MTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVD 944 (997)
Q Consensus 908 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 944 (997)
....++. +..+-..++......|++++|..+..+
T Consensus 194 a~l~~~a---d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 194 AYLSPAA---DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhCCCC---chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7766543 666666777777777887777766444
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=1.9e-07 Score=60.96 Aligned_cols=32 Identities=34% Similarity=0.860 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001911 367 GCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKM 398 (997)
Q Consensus 367 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (997)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=9.6e-05 Score=71.06 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=76.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001911 752 DGLIKVGKTEEAYKVMLMMEEKGCYPNVV-TYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLL 830 (997)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 830 (997)
-+....|+.+.|...++++... + |... .-..-.-.+-..|++++|+++++.+++.+ +-|..++..-+-+.-..|+.
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 3344445555555555555443 2 2111 11111111334455555555555555542 12445555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 831 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
.+|++.+.+..+.+ ..|..+|..|..+|...|++++|.-.++++.-
T Consensus 137 l~aIk~ln~YL~~F----------------------------------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 137 LEAIKELNEYLDKF----------------------------------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHHh----------------------------------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 55555555544432 34445555566666666666666665655554
Q ss_pred CCCCCCcchhhHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 001911 911 FSSNSAASRNSTLLLIESLSLAR---KIDKAFELYVDMIR 947 (997)
Q Consensus 911 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 947 (997)
..|. ++..+..++..+.-.| +++-|.++|++.++
T Consensus 183 ~~P~---n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQPF---NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4443 4444445555444332 35555555665555
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=1.9e-06 Score=79.85 Aligned_cols=97 Identities=8% Similarity=-0.084 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
+..++..+...|++++|.+.|+.+....|. +...|..++.++...|++++|+..|+++++ ..|+ +.++..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW---SWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 556889999999999999999999998876 899999999999999999999999999999 6785 8999999999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCc
Q 001911 964 LIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
|...|++++|+..+++.+.....
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999998776544
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.44 E-value=2.4e-06 Score=77.25 Aligned_cols=99 Identities=9% Similarity=-0.028 Sum_probs=90.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVH 959 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 959 (997)
+....+.++..+...|++++|.++|+.+...+|. +...|..|+.++...|++++|+..|.++.. +.|| +.++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHH
Confidence 4556778999999999999999999999999886 899999999999999999999999999999 6785 899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 960 LIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 960 l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
++.+|...|+.+.|.+-|+......
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999876543
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.44 E-value=0.0001 Score=86.73 Aligned_cols=245 Identities=13% Similarity=0.104 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHH
Q 001911 571 QANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLC 650 (997)
Q Consensus 571 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 650 (997)
.|.++-+..+.. +.+...|...|......+++++|.++.++++..-.... -.--.-.|.++++.-.
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE------------eeEKLNiWiA~lNlEn 1508 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE------------EEEKLNIWIAYLNLEN 1508 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch------------hHHHHHHHHHHHhHHH
Confidence 344444334332 55667888889999999999999999999876531100 0112236777777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 001911 651 KVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALK 730 (997)
Q Consensus 651 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 730 (997)
.-|.-+...++|++..+.. ....+|..|...|.+.+++++|.++++.|.+.- .-....|...+..+.++.+.+.|..
T Consensus 1509 ~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1509 AYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred hhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHH
Confidence 7787888899999988652 345678899999999999999999999998862 3477889999999999999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 001911 731 VISKMLEDSYAP-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG 809 (997)
Q Consensus 731 ~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 809 (997)
++.+.++.=.+. ........+..-.+.|+.+.+..+|+......++ ....|+.+|+.-.++|+.+.+..+|++....+
T Consensus 1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 999988752111 2334445566667889999999999998876433 56789999999999999999999999999998
Q ss_pred CCCC-H-HHHHHHHHHHHhcCCHHHH
Q 001911 810 CAPN-F-VTYRVLINHCCASGLLDEA 833 (997)
Q Consensus 810 ~~p~-~-~~~~~l~~~~~~~g~~~~A 833 (997)
+.|. . ..|.-.+.-=-..|+-+.+
T Consensus 1665 l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1665 LSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CChhHhHHHHHHHHHHHHhcCchhhH
Confidence 8874 2 3344444433344554433
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.42 E-value=0.0049 Score=66.09 Aligned_cols=76 Identities=7% Similarity=0.180 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH-HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001911 300 PDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNV-VTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSL 378 (997)
Q Consensus 300 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 378 (997)
-|..+|+.||+-+..+ .++++.+.++++... .|.. ..|..-|..-....+++..+.+|.+....-+ +...|..-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 3677888888777666 788888888887654 3433 4555666777777888888888887776533 34444444
Q ss_pred HH
Q 001911 379 IH 380 (997)
Q Consensus 379 i~ 380 (997)
++
T Consensus 93 l~ 94 (656)
T KOG1914|consen 93 LS 94 (656)
T ss_pred HH
Confidence 44
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=5.9e-05 Score=73.32 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=125.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHh
Q 001911 783 TAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSRE 862 (997)
Q Consensus 783 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 862 (997)
..+...+...|+-+.+..+....... ..-|.......+....+.|++.+|...+.+.....
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------------------ 130 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA------------------ 130 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC------------------
Confidence 55667777788888888877776553 12256666678888889999999999998887642
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELY 942 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 942 (997)
+++...|+.++.+|.+.|+.++|...|.++.+..|+ ++.+.++++..+...|+++.|..++
T Consensus 131 ----------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 131 ----------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN---EPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred ----------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---CchhhhhHHHHHHHcCCHHHHHHHH
Confidence 456678888999999999999999999999988776 7888889999999999999999998
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 943 VDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYS 979 (997)
Q Consensus 943 ~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~ 979 (997)
...... .+ |..+-..|+.+....|++++|.++...
T Consensus 192 l~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 192 LPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 888873 34 577778888888899999998876643
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=6.9e-05 Score=87.28 Aligned_cols=213 Identities=11% Similarity=0.099 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQ-MVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMI 751 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 751 (997)
+......+=.+....|..++|- +++.++.+ ++..........+++.-...... .+..+...+-.|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 3344444444556666666653 33333321 22222222233333333333332 3456688888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 001911 752 DGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLL 830 (997)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~ 830 (997)
....+.|++++|..+++...+.... +......++..+.+.+++++|+..+++.+.. .| +......+..++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcch
Confidence 9999999999999999999986322 5566777888899999999999999999987 56 577788888999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 001911 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMT 909 (997)
Q Consensus 831 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 909 (997)
++|..+|++....+ |+ ..++..++.++.+.|+.++|...|+++.
T Consensus 171 ~~A~~~y~~~~~~~-----------------------------------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 171 EQADACFERLSRQH-----------------------------------PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHHHHhcC-----------------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999987632 44 5578889999999999999999999998
Q ss_pred cCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 910 SFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 910 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
+.... ....|+.+ .++...-...|+++
T Consensus 216 ~~~~~---~~~~~~~~------~~~~~~~~~~~~~~ 242 (694)
T PRK15179 216 DAIGD---GARKLTRR------LVDLNADLAALRRL 242 (694)
T ss_pred HhhCc---chHHHHHH------HHHHHHHHHHHHHc
Confidence 76432 33444433 23334444455554
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00041 Score=67.42 Aligned_cols=253 Identities=14% Similarity=0.081 Sum_probs=165.0
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 001911 648 GLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDL 727 (997)
Q Consensus 648 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 727 (997)
-+.-.|++..+...-...... +.+...-..+.++|...|.+..... .... |-.|.......+.......++.+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHH
Confidence 344467777776665554432 2344444456667777777644332 2222 223444455555554445555554
Q ss_pred HHHH-HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001911 728 ALKV-ISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS 806 (997)
Q Consensus 728 A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 806 (997)
-+.- .+.+.......+......-...|++.|++++|.+...... +......=+..+.+..+++-|.+.+++|+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 3444443333333333333456889999999999887732 22333333344778899999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh
Q 001911 807 SKGCAPNFVTYRVLINHCCA----SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV 882 (997)
Q Consensus 807 ~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 882 (997)
+- .+..|.+-|..++.+ .+...+|.-+|++|.++. .|+.
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~----------------------------------~~T~ 207 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT----------------------------------PPTP 207 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc----------------------------------CCCh
Confidence 74 466777767776654 457899999999998865 5777
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDK-AFELYVDMIRKDGSPEL 954 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~ 954 (997)
.+.+-++.++...|++++|..+++.++...++ ++.+..+++-+-...|+-.+ -.+.+.++.. ..|+.
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~---dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p~h 275 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAK---DPETLANLIVLALHLGKDAEVTERNLSQLKL--SHPEH 275 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCCcc
Confidence 77888889999999999999999999998776 77788877777677776544 4456666665 45653
No 130
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.35 E-value=4.5e-05 Score=74.83 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=67.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCC-HHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESL-SLARK--IDKAFELYVDMIRKDGSPE-LST 956 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~-~~~ 956 (997)
+...|..|+..|...|++++|+..|+++....|+ +...+..++.++ ...|+ .++|.++++++++ ..|+ ..+
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~a 146 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTA 146 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhH
Confidence 3456667777777777777777777777776654 666666666653 45555 4777777777777 4563 666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+..|+..+.+.|++++|+..++++++...+
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 777777777777777777777776665444
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=7.4e-05 Score=78.96 Aligned_cols=120 Identities=16% Similarity=0.072 Sum_probs=80.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHH
Q 001911 786 IDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFI 864 (997)
Q Consensus 786 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 864 (997)
...+...|++++|+..++.+... .| |..-+......+.+.++.++|.+.++++....
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-------------------- 370 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-------------------- 370 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------
Confidence 33455667777777777777665 45 45556666677777777777777777776542
Q ss_pred HHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 865 VSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYV 943 (997)
Q Consensus 865 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 943 (997)
|+ ......++.+|.+.|+..+|+..++......|. ++..|..|+.+|...|+..+|...+.
T Consensus 371 ---------------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~---dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 371 ---------------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE---DPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred ---------------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---CchHHHHHHHHHHHhCchHHHHHHHH
Confidence 44 334556677777777777777777777766654 77777777777777777766666554
Q ss_pred HH
Q 001911 944 DM 945 (997)
Q Consensus 944 ~~ 945 (997)
+.
T Consensus 433 E~ 434 (484)
T COG4783 433 EG 434 (484)
T ss_pred HH
Confidence 43
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00018 Score=69.20 Aligned_cols=187 Identities=15% Similarity=0.042 Sum_probs=142.6
Q ss_pred cCCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 001911 757 VGKTEEAYKVMLMMEEK---G-CYPNVV-TYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLL 830 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~ 830 (997)
..+.++..+++.++... | ..|+.. .|..++-+....|+.+-|...++++..+ + | +..+-..-.-.+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 35677888888777652 3 445554 3455666677889999999999999887 2 5 444444444456678999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 831 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
++|.++++...++. +.+...+.--+.+...+|+.-+|++-+....+
T Consensus 103 ~~A~e~y~~lL~dd----------------------------------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD----------------------------------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred hhHHHHHHHHhccC----------------------------------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999988754 22344555666677778888899999999999
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC---CHHHHHHHHHHhhccC
Q 001911 911 FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVN---KWEEALQLSYSICHTD 984 (997)
Q Consensus 911 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g---~~~eA~~~~~~~~~~~ 984 (997)
..++ |..+|..++..|...|++++|.-+|++++- ..|- +..+-.|++.++-.| +.+-|.+++.+.+...
T Consensus 149 ~F~~---D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 149 KFMN---DQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HhcC---cHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8776 999999999999999999999999999998 7895 666678888877665 5667788887765543
No 133
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.29 E-value=0.00037 Score=82.28 Aligned_cols=132 Identities=11% Similarity=0.121 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQMVFSKMLEH-GCNP---NVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYT 748 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 748 (997)
+...|-..|......++.++|.+++++++.. ++.- -...|.++++.-..-|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3444555555555555555555555555442 1100 11234444444444444444444454444321 1123344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 001911 749 EMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSS 807 (997)
Q Consensus 749 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 807 (997)
.|...|.+.+++++|.++++.|.++ +.-....|..++..+.++.+-+.|..++++.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4444455555555555555555443 222334444444444454444555555544444
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=1.3e-05 Score=73.92 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
......++..+...|++++|.+.++.+....|. +...+..++.++...|++++|...++++++ ..|+ ...+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l 91 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHH
Confidence 345677889999999999999999999987765 889999999999999999999999999998 4575 7899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
+.+|...|++++|...+++....+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999887654
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.00013 Score=85.53 Aligned_cols=240 Identities=9% Similarity=0.080 Sum_probs=160.0
Q ss_pred CCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 001911 635 KEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNN-IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYG 713 (997)
Q Consensus 635 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 713 (997)
.+.+...+..|+..+...+++++|.++.+..... .|+. ..|-.+...+.+.++..++..+ .+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~------------- 89 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL------------- 89 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh-------------
Confidence 4566778999999999999999999999977765 3443 3344444466777776655554 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 001911 714 SLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 714 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 793 (997)
+.......++.....+...|.+. .-+...+-.+..+|-+.|+.++|..+++++.+.... |+...|.+...|...
T Consensus 90 --l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 90 --IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE- 163 (906)
T ss_pred --hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-
Confidence 22233333443333444444443 234457778888888889999999999998887633 788888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 794 KVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 794 ~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
++++|.+++.+.+.. +...+++.++..++.++.... |.+..-+..+.+. +
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~k--------------i 213 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERK--------------V 213 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHH--------------H
Confidence 888988888887764 445557777777777765532 2222222211111 1
Q ss_pred ccC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH
Q 001911 874 GKT-DSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLS 930 (997)
Q Consensus 874 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 930 (997)
... +..--...+.-+-..|.+.++|++++.+++.+++.+|. |..+...++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~---n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK---NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc---chhhHHHHHHHHH
Confidence 110 11122345666778888999999999999999998875 7777777887776
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0012 Score=64.21 Aligned_cols=170 Identities=21% Similarity=0.154 Sum_probs=113.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001911 662 LDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYA 741 (997)
Q Consensus 662 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 741 (997)
.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+.|.+.+++|.+-
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3333333323343333334445778888888888776621 2222222344566777888888888888763
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001911 742 PNVVIYTEMIDGLIK----VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTY 817 (997)
Q Consensus 742 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 817 (997)
.+..+.+.|..++.+ .+++.+|.-+|++|.++ .+|++.+.+....++...|++++|..++++.+.+. .-++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHH
Confidence 355566666666554 45788889999998876 67788888888888888999999999999988873 3367777
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHHh
Q 001911 818 RVLINHCCASGLLDEA-HNLLEEMKQ 842 (997)
Q Consensus 818 ~~l~~~~~~~g~~~~A-~~~~~~m~~ 842 (997)
..++.+-...|...++ .+.+.+...
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 7777777777766544 344444443
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=4e-05 Score=71.45 Aligned_cols=95 Identities=14% Similarity=0.026 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
....++..+...|++++|...|+.+....++..........|+.++...|++++|+..++..... ...+.++..++++
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDI 127 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHH
Confidence 44567889999999999999999999876443333556777899999999999999999774331 1235678899999
Q ss_pred HHhcCCHHHHHHHHHHh
Q 001911 964 LIRVNKWEEALQLSYSI 980 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~ 980 (997)
|.+.|++++|+..|++.
T Consensus 128 ~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 128 YLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHCCCHHHHHHHHHHh
Confidence 99999999999999864
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=5.3e-05 Score=81.39 Aligned_cols=124 Identities=23% Similarity=0.234 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
.-..|+..+...++++.|..+++++.+.. |.. ...++..+...
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~-----------------------------------pev--~~~LA~v~l~~ 213 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD-----------------------------------PEV--AVLLARVYLLM 213 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC-----------------------------------CcH--HHHHHHHHHhc
Confidence 34455666777889999999999987643 443 44578888889
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEAL 974 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~ 974 (997)
++-.+|++++++..+..|. +...+..-+.-|...++++.|+++.+++++ ..|+ ..+|..|+.+|.+.|++++|+
T Consensus 214 ~~E~~AI~ll~~aL~~~p~---d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 214 NEEVEAIRLLNEALKENPQ---DSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred CcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999987765 677777777888899999999999999999 7896 789999999999999999999
Q ss_pred HHHHHhh
Q 001911 975 QLSYSIC 981 (997)
Q Consensus 975 ~~~~~~~ 981 (997)
..++.+-
T Consensus 289 laLNs~P 295 (395)
T PF09295_consen 289 LALNSCP 295 (395)
T ss_pred HHHhcCc
Confidence 9998764
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=0.00013 Score=77.09 Aligned_cols=173 Identities=18% Similarity=0.121 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 001911 776 YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKV 855 (997)
Q Consensus 776 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 855 (997)
.|+...+...+.+......-..+-.++- +..+ +-...........+...|.+++|+..++.+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~--~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~------------ 335 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLA-KRSK--RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA------------ 335 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHH-HHhC--ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh------------
Confidence 3455555555554443333333333222 2222 123334444555566778899999999887654
Q ss_pred HHhHhHhHHHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 856 IEGFSREFIVSLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 856 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
.|+.+ .+...++.+.+.++.++|.+.++++....|+ ....+..++.+|.+.|+
T Consensus 336 -----------------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l~~~~a~all~~g~ 389 (484)
T COG4783 336 -----------------------QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN---SPLLQLNLAQALLKGGK 389 (484)
T ss_pred -----------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhcCC
Confidence 36665 4456678999999999999999999999886 68888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccchhh
Q 001911 935 IDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQEE 991 (997)
Q Consensus 935 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~ 991 (997)
+.+|+..++.... -.| |+..|..|+++|.++|+..+|..-+....-....|.+..
T Consensus 390 ~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 390 PQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAI 445 (484)
T ss_pred hHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999988 457 589999999999999888888777766665555555443
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=6.5e-05 Score=69.30 Aligned_cols=112 Identities=13% Similarity=0.035 Sum_probs=81.6
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 801 LLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 801 l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
.+++.+.. .| +......+...+...|++++|...++...... +
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------------------p 48 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD----------------------------------P 48 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----------------------------------C
Confidence 45555554 44 34556667777788888888888887765532 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.+...+..++..|...|++++|...++++....|. +...+..++.++...|++++|.+.++++.+ ..|+
T Consensus 49 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~ 117 (135)
T TIGR02552 49 YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD---DPRPYFHAAECLLALGEPESALKALDLAIE--ICGE 117 (135)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccc
Confidence 23456777888888888888888888888776654 677778888888888888888888888888 5565
No 141
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=7.8e-05 Score=76.61 Aligned_cols=291 Identities=11% Similarity=0.011 Sum_probs=165.8
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 001911 648 GLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDL 727 (997)
Q Consensus 648 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 727 (997)
.+.+..++.+|+..+...+... +.+..-|..-...+...|++++|..-.+.-.+.... ........-.++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 4566777788888888877765 344555555555666677777776666555443211 11222223333333344444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH-HHHhccCCHHHHHHHHHHH
Q 001911 728 ALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKG-CYPNVVTYTAMI-DGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 728 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li-~~~~~~g~~~~A~~l~~~m 805 (997)
|.+.++. ...+ ....|+..++...... -+|...+|..+- .++.-.|+.++|.+.--..
T Consensus 136 A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 4433330 0000 1112222222222221 124444444332 2345567777777766665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhh
Q 001911 806 SSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPA 884 (997)
Q Consensus 806 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~ 884 (997)
++.. .-+......-..++.-.++.+.|...|++...... ..+..-.... .|. ...
T Consensus 196 lkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp----dh~~sk~~~~-------------------~~k~le~ 251 (486)
T KOG0550|consen 196 LKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDP----DHQKSKSASM-------------------MPKKLEV 251 (486)
T ss_pred Hhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccCh----hhhhHHhHhh-------------------hHHHHHH
Confidence 5531 11333333333344456777777777777655331 1111100000 111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNS-AASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
+..-++-..+.|++.+|.+.|..++..+|.+ .++...|...+......|+.++|+.--+.+++ +.|. ..++..-+.
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~ 329 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRAN 329 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHH
Confidence 4445566678889999999999988887654 46667777777777788888888888888887 6676 568888888
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCc
Q 001911 963 GLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 963 ~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+|...++|++|.+.+++..+....
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 888889999999888887665443
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=3.7e-05 Score=69.11 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFV 958 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~ 958 (997)
..+..++..+.+.|++++|++.++++....|+.......+..++.++...|++++|...++++.. ..|+ ..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCcccHHHH
Confidence 35677889999999999999999999987665433456788899999999999999999999998 3454 46789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 959 HLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 959 ~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
.++.+|.+.|++++|...++.+.....
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 999999999999999999999887643
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=1.9e-05 Score=78.11 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGL 964 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y 964 (997)
..-++-..+.+++++|+..|.++++..|. |...|..-+.+|.+.|.++.|++..+.++. +.|. ..+|..|+.+|
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHH
Confidence 34456677788888888888888888776 778888888888888888888888888888 7786 57888888888
Q ss_pred HhcCCHHHHHHHHHHhhccCCccc
Q 001911 965 IRVNKWEEALQLSYSICHTDINWL 988 (997)
Q Consensus 965 ~~~g~~~eA~~~~~~~~~~~~~~~ 988 (997)
...|++++|++.|++.++.+..|.
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcH
Confidence 888888888888888888777765
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.08 E-value=7.2e-06 Score=68.02 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 001911 895 AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 895 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA 973 (997)
+|+++.|+.+++++.+..|... +...+..++.++.+.|++++|+.++++ .+ ..|+ ......++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 6899999999999998876412 566777799999999999999999998 44 4454 56777889999999999999
Q ss_pred HHHHHH
Q 001911 974 LQLSYS 979 (997)
Q Consensus 974 ~~~~~~ 979 (997)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999986
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.07 E-value=0.00096 Score=78.56 Aligned_cols=236 Identities=12% Similarity=0.113 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 484 STYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAY 563 (997)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 563 (997)
..+..|+..+...+++++|.++.+...+.... ....|-.+...+.+.++++++..+ .++..+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~~ 93 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NLIDSF 93 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hhhhhc
Confidence 35566666666667777777776655554211 222333333345555554444333 122223
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHH
Q 001911 564 LKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYG 643 (997)
Q Consensus 564 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (997)
....++.-+..+...|... .-+...+..+..+|-+.|+.++|..+++++.+.. +.|+.+.|
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----------------~~n~~aLN 154 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----------------RDNPEIVK 154 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------------cccHHHHH
Confidence 3333333333333334332 2233456666667777777777777777776643 45566666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 001911 644 ALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK 723 (997)
Q Consensus 644 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 723 (997)
.+...|... ++++|.+++.+.... |...+++..+.++|.++....+. +
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d--------------- 202 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-D--------------- 202 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-c---------------
Confidence 666666666 677776666665432 44445666666666666655322 1
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 001911 724 RLDLALKVISKMLED-SYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFG 790 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 790 (997)
.+.-.++.+.+... +...-+.++-.+-..|-..++++++.++++.+.+.... |.....-++..|.
T Consensus 203 -~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 203 -FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22222223333222 22233445555566677777777888887777776433 5555566666554
No 146
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.00 E-value=0.037 Score=59.65 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 001911 655 VREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVG---KLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKV 731 (997)
Q Consensus 655 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 731 (997)
.+++..+++.....-..-+..+|..+.+-=-..- +.+...+.++++...-..--..+|...++...+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455666665544322233344443333211111 3566667777776643222334677788888888889999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 001911 732 ISKMLEDSYAP-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC 810 (997)
Q Consensus 732 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 810 (997)
|.++.+.+..+ ++..+++++..||. ++.+-|.++|+--..+ ..-++.--...+.-+...++-..|..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999887666 78899999998884 8889999999876654 333455556778888899999999999999999877
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 811 APN--FVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 811 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
.|+ ...|..++.-=..-|++..+.++-+++...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 765 678999999888999999999998887654
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.97 E-value=0.00062 Score=61.87 Aligned_cols=99 Identities=8% Similarity=-0.058 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+......+...+...|++++|.++|+-..... +-+...|..|+-++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D----------------------------------p~~~~y~~gLG~~~ 79 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD----------------------------------AWSFDYWFRLGECC 79 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------cccHHHHHHHHHHH
Confidence 35556677778889999999999998876532 12345778899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
...|++++|+..|.++....|+ ++..+..++.++...|+.+.|.+.|+.++..
T Consensus 80 Q~~g~~~~AI~aY~~A~~L~~d---dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 80 QAQKHWGEAIYAYGRAAQIKID---APQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHhhHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876 8899999999999999999999999999874
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00012 Score=62.49 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=83.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
.+..++..+...|++++|+..++++.+..|. +...+..++.++...|++++|.+.+++..+ ..|+ ..++..++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHH
Confidence 3567888999999999999999999887654 557888899999999999999999999998 4464 678999999
Q ss_pred HHHhcCCHHHHHHHHHHhhccC
Q 001911 963 GLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 963 ~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
++...|++++|...+++.....
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHccC
Confidence 9999999999999999876543
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.90 E-value=1.5e-05 Score=53.11 Aligned_cols=34 Identities=41% Similarity=0.758 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc
Q 001911 303 VLYTKMISGLCEASLFEEAMDLLNRMRARSCIPN 336 (997)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 336 (997)
++||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.87 E-value=0.00013 Score=79.13 Aligned_cols=91 Identities=8% Similarity=0.029 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRV 967 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~ 967 (997)
+..+...|++++|++.|++++...|. +...|..++.+|...|++++|+..++++++ +.|+ ..+|..++.+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 44445555666666666665555543 455555555555555666666666666555 4453 45555556666666
Q ss_pred CCHHHHHHHHHHhhccC
Q 001911 968 NKWEEALQLSYSICHTD 984 (997)
Q Consensus 968 g~~~eA~~~~~~~~~~~ 984 (997)
|++++|+..+++.+..+
T Consensus 84 g~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 84 EEYQTAKAALEKGASLA 100 (356)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 66666666655554443
No 151
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.86 E-value=0.00013 Score=74.53 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
-..|..|.+.|.-.|+++.|+.+-+.-.. |.+.|.+.. ...-++..|+++++
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~------------ia~efGDrA----------------aeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLE------------IAQEFGDRA----------------AERRAHSNLGNCHI 246 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHH------------HHHHhhhHH----------------HHHHhhcccchhhh
Confidence 34577777777788899998887765322 111111110 11225667999999
Q ss_pred hcCCHHHHHHHHHHHhcCC---CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFS---SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK----D-GSPELSTFVHLIKGLI 965 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~~~~~~l~~~y~ 965 (997)
-.|+++.|++.|+...... .+-.........|+..|....++++|+.+..+-++- + ..-+.-++..|+.+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999998865321 112345566677888998899999999988775541 1 1223558889999999
Q ss_pred hcCCHHHHHHHHHHhhccCCc
Q 001911 966 RVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 966 ~~g~~~eA~~~~~~~~~~~~~ 986 (997)
..|.++.|+.+.+..++...+
T Consensus 327 alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 999999999998876654443
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.85 E-value=0.00076 Score=62.80 Aligned_cols=126 Identities=16% Similarity=0.161 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPN---VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN--FVTYRVL 820 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~l 820 (997)
.|..++..+ ..++...+...++.+...... + ......+...+...|++++|...|+........|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 368888888888888875322 2 23334455777888999999999999888752232 3355567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEV 900 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 900 (997)
..++...|++++|+..++...... .....+..++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~-----------------------------------~~~~~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA-----------------------------------FKALAAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc-----------------------------------hHHHHHHHHHHHHHHCCCHHH
Confidence 788888999999999886633211 122345678899999999999
Q ss_pred HHHHHHHH
Q 001911 901 ALELHEEM 908 (997)
Q Consensus 901 A~~~~~~~ 908 (997)
|...|+++
T Consensus 137 A~~~y~~A 144 (145)
T PF09976_consen 137 ARAAYQKA 144 (145)
T ss_pred HHHHHHHh
Confidence 99998875
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.85 E-value=0.00085 Score=70.52 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
+..++..+.+.|++++|+++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455555555555555555555544
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0028 Score=65.64 Aligned_cols=282 Identities=15% Similarity=0.077 Sum_probs=169.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 001911 596 DGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNI 675 (997)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 675 (997)
..+.+..++..|+..+....+.. +.++.-|..-...+...+++++|.--.+.-.+.. +-...
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-----------------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k 118 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-----------------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSK 118 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-----------------ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccc
Confidence 45566777888888888877653 4556666667777777788888876665554432 11222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH-HH
Q 001911 676 VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSY-APNVVIYTEMI-DG 753 (997)
Q Consensus 676 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li-~~ 753 (997)
.....-.++...++..+|.+.++. ...+ ....|+..++....... +|...+|..+- .+
T Consensus 119 ~~~r~~~c~~a~~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~c 178 (486)
T KOG0550|consen 119 GQLREGQCHLALSDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAEC 178 (486)
T ss_pred cccchhhhhhhhHHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhh
Confidence 333444455555555555555541 1111 12223333333333221 24444444442 45
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHHHhCCCCCCHHHHHH------------
Q 001911 754 LIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG--FGKVGKVDKCLELLRQMSSKGCAPNFVTYRV------------ 819 (997)
Q Consensus 754 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~------------ 819 (997)
+.-.|+.++|...--....... ...+..++++ +.-.++.+.|+..|++.+.. .|+...-..
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence 5667788877776666554321 1122233332 34567778888888887775 354322211
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 001911 820 -LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL 898 (997)
Q Consensus 820 -l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 898 (997)
-.+-..+.|++.+|.+.+.+..... |....|+...|...+....+.|+.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~id------------------------------P~n~~~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNID------------------------------PSNKKTNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCC------------------------------ccccchhHHHHHHhHhhhcccCCc
Confidence 1233456788888888887766532 223456666788888889999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
++|+.-.+++.+.++. -...+..-+.++...++|++|++.|+++.+....++
T Consensus 304 ~eaisdc~~Al~iD~s---yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e 355 (486)
T KOG0550|consen 304 REAISDCNEALKIDSS---YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCE 355 (486)
T ss_pred hhhhhhhhhhhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999988632 334444445555667999999999999998654443
No 155
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.83 E-value=0.00051 Score=73.96 Aligned_cols=125 Identities=14% Similarity=0.200 Sum_probs=100.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCC 825 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~ 825 (997)
...|+..+...++++.|.++|+++.+.. |+. ...++..+...++-.+|++++++.+.. .| +...+..-...|.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445566667889999999999999873 443 445778888888999999999999875 45 6777777778889
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
+.++++.|+.+.+++... .|+ ..+|..|+.+|...|++++|+-.
T Consensus 246 ~k~~~~lAL~iAk~av~l-----------------------------------sP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL-----------------------------------SPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred hcCCHHHHHHHHHHHHHh-----------------------------------CchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999998764 354 45899999999999999999999
Q ss_pred HHHHhcCC
Q 001911 905 HEEMTSFS 912 (997)
Q Consensus 905 ~~~~~~~~ 912 (997)
++.+....
T Consensus 291 LNs~Pm~~ 298 (395)
T PF09295_consen 291 LNSCPMLT 298 (395)
T ss_pred HhcCcCCC
Confidence 98876653
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.83 E-value=0.00029 Score=63.23 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK 894 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 894 (997)
.++..++..+...|++++|...++++.... |.. ......+..++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~------------------------------~~~~~~~~~l~~~~~~ 51 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKS------------------------------TYAPNAHYWLGEAYYA 51 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCc------------------------------cccHHHHHHHHHHHHh
Confidence 456778888899999999999999987643 000 1113456779999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 895 AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 895 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.|++++|+..++.+....|+......++..++.++...|++++|...++++++ ..|+
T Consensus 52 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~ 108 (119)
T TIGR02795 52 QGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK--RYPG 108 (119)
T ss_pred hccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH--HCcC
Confidence 99999999999999987776444567788999999999999999999999999 4575
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.82 E-value=0.00024 Score=68.31 Aligned_cols=97 Identities=12% Similarity=-0.062 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...|..++..+...|++++|+..++++....++......++..++.++...|++++|+..++++++ ..|+ ...+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 346778889999999999999999999877554333456899999999999999999999999998 5676 6677788
Q ss_pred HHHHH-------hcCCHHHHHHHHHHh
Q 001911 961 IKGLI-------RVNKWEEALQLSYSI 980 (997)
Q Consensus 961 ~~~y~-------~~g~~~eA~~~~~~~ 980 (997)
+.+|. +.|++++|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 88888 888888666666543
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.00036 Score=67.26 Aligned_cols=100 Identities=15% Similarity=0.055 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
..+..++..|...|++++|+..++++.+..+........+..++.++...|++++|...++++++ ..|+ ...+..++
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHH
Confidence 36788999999999999999999999876543222357888999999999999999999999999 6685 77888999
Q ss_pred HHHHhcCC--------------HHHHHHHHHHhhccC
Q 001911 962 KGLIRVNK--------------WEEALQLSYSICHTD 984 (997)
Q Consensus 962 ~~y~~~g~--------------~~eA~~~~~~~~~~~ 984 (997)
.+|...|+ +++|.+.+++....+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 99998887 466666666665544
No 159
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.79 E-value=0.0037 Score=57.25 Aligned_cols=131 Identities=16% Similarity=0.103 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHH
Q 001911 811 APNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILID 890 (997)
Q Consensus 811 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 890 (997)
.|....-..|..++...|+..||...|++...--+ ..+......+.+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f---------------------------------A~d~a~lLglA~ 132 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIF---------------------------------AHDAAMLLGLAQ 132 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc---------------------------------CCCHHHHHHHHH
Confidence 46656666667777777777777777766543210 122334455666
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~ 970 (997)
+....++..+|...++++.+.+|. .-.+.....++..+...|++++|...++.++. ..|++.+....+.-+.++|+.
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~~pa-~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEYNPA-FRSPDGHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRL 209 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhcCCc-cCCCCchHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcch
Confidence 666677777777777776665442 22344555666667777777777777777776 667766666666667777766
Q ss_pred HHHHHHH
Q 001911 971 EEALQLS 977 (997)
Q Consensus 971 ~eA~~~~ 977 (997)
++|...+
T Consensus 210 ~ea~aq~ 216 (251)
T COG4700 210 REANAQY 216 (251)
T ss_pred hHHHHHH
Confidence 6665444
No 160
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.71 E-value=5.5e-05 Score=50.30 Aligned_cols=33 Identities=27% Similarity=0.638 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 001911 374 IFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPG 406 (997)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 406 (997)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888886
No 161
>PLN02413 choline-phosphate cytidylyltransferase
Probab=97.71 E-value=3.5e-06 Score=82.81 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=54.2
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSAAD 87 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (997)
-||.||+|.|++||.+.++.++++|.++|+.....++.+.||. .|+++.|+||++++....
T Consensus 38 LfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~---------~ER~e~V~acKyVDeVV~ 98 (294)
T PLN02413 38 LFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTE---------DERYESLRHCKWVDEVIP 98 (294)
T ss_pred hCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCH---------HHHHHHHHhcccccEEee
Confidence 4899999999999999999999999999998877776677787 999999999998876544
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.68 E-value=0.00018 Score=56.12 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
++..+...|++++|++.|+++.+..|. +...+..++.++...|++++|...|+++++ ..|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALE--LDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 556666777777777777777766654 667777777777777777777777777766 4454
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.00091 Score=66.60 Aligned_cols=110 Identities=19% Similarity=0.093 Sum_probs=87.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHH
Q 001911 822 NHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEV 900 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 900 (997)
+-+.+.+++++|+..+.+..+. .|..+ .|..-+.+|.+.|.++.
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-----------------------------------~P~nAVyycNRAAAy~~Lg~~~~ 133 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-----------------------------------DPTNAVYYCNRAAAYSKLGEYED 133 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-----------------------------------CCCcchHHHHHHHHHHHhcchHH
Confidence 3456677888888888777653 46655 45567889999999999
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHH
Q 001911 901 ALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELS-TFVHLIKGLIRVNKWE 971 (997)
Q Consensus 901 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~y~~~g~~~ 971 (997)
|++-.+.++..+|. ...+|..|+.+|...|++++|++.|+++++ +.|+.+ ...+|-.+--+.+.-.
T Consensus 134 AVkDce~Al~iDp~---yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 134 AVKDCESALSIDPH---YSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhcChH---HHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999876 789999999999999999999999999999 889844 4446666554444433
No 164
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.66 E-value=5.8e-05 Score=49.78 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 001911 303 VLYTKMISGLCEASLFEEAMDLLNRMRARSCIP 335 (997)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 335 (997)
.+||.+|.++++.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888887777766
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.00088 Score=72.69 Aligned_cols=109 Identities=9% Similarity=-0.064 Sum_probs=89.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 899 (997)
....+...|++++|+.++++..+.. +.+...|..++.+|...|+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~----------------------------------P~~~~a~~~~a~~~~~~g~~~ 53 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD----------------------------------PNNAELYADRAQANIKLGNFT 53 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHcCCHH
Confidence 3556678899999999999887643 223457888999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRV 967 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~ 967 (997)
+|+..+++++...|. +...|..++.+|...|++++|+..|+++++ +.|+ ..+...+..+..+.
T Consensus 54 eAl~~~~~Al~l~P~---~~~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 54 EAVADANKAIELDPS---LAKAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCcC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH
Confidence 999999999998875 788999999999999999999999999999 6785 55555555554443
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.64 E-value=0.00056 Score=69.89 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVH 959 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 959 (997)
.|..-...+.+.|++++|+..|+.+.+..|++...+.++..++.+|...|++++|...|+++++ ..|+ ..++..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~--~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK--NYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhHHHHH
Confidence 3444444456789999999999999998887555567888999999999999999999999998 4464 568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 960 LIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 960 l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
++.+|...|++++|...++++...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988763
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.64 E-value=0.0091 Score=60.69 Aligned_cols=56 Identities=11% Similarity=0.066 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 924 LLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
.++.-|.+.|++..|+.-++.+++ -.|+ .++...++.+|...|..++|.+....+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~--~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLR--DYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 355667888999999999999998 4565 5789999999999999999999887654
No 168
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.64 E-value=0.00017 Score=57.14 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHhhc
Q 001911 919 RNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVN-KWEEALQLSYSICH 982 (997)
Q Consensus 919 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g-~~~eA~~~~~~~~~ 982 (997)
..+|..++..+...|++++|+..|+++++ +.|+ ..++..++.+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34445555555555555555555555555 3443 445555555555555 45555555554443
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.002 Score=62.14 Aligned_cols=117 Identities=17% Similarity=0.055 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHY 892 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 892 (997)
...+..+...+...|++++|...+++....... .+. ...+..++.+|
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------~~~~~~~~~~la~~~ 82 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEED--------------------------------PNDRSYILYNMGIIY 82 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc--------------------------------cchHHHHHHHHHHHH
Confidence 444556666666667777776666665432100 011 23455666677
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCCCHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK--------------IDKAFELYVDMIRKDGSPELSTFV 958 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~p~~~~~~ 958 (997)
.+.|++++|++.++++....|. +...+..++.++...|+ +++|.+.++++.+ ..|+. +.
T Consensus 83 ~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~--~~ 155 (172)
T PRK02603 83 ASNGEHDKALEYYHQALELNPK---QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN--YI 155 (172)
T ss_pred HHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh--HH
Confidence 7777777777777777665543 45555566666665554 5667777777666 44543 44
Q ss_pred HHHHHHHhcCC
Q 001911 959 HLIKGLIRVNK 969 (997)
Q Consensus 959 ~l~~~y~~~g~ 969 (997)
.++..+...|+
T Consensus 156 ~~~~~~~~~~~ 166 (172)
T PRK02603 156 EAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHhcCc
Confidence 44444444443
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.62 E-value=0.00077 Score=68.88 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC----hhhHHHHHH
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI----VPAYRILID 890 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~ 890 (997)
..|...+..+.+.|++++|...|+.+...+ |+ ..++..++.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----------------------------------P~s~~a~~A~y~LG~ 188 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----------------------------------PDSTYQPNANYWLGQ 188 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----------------------------------cCCcchHHHHHHHHH
Confidence 345555555567899999999999988765 33 246788999
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPEL 954 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 954 (997)
+|...|++++|+..|+++.+..|++.....++..++.++...|++++|.+.|+++++ ..|+.
T Consensus 189 ~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s 250 (263)
T PRK10803 189 LNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK--KYPGT 250 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 999999999999999999998888777888999999999999999999999999999 56863
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.00079 Score=57.22 Aligned_cols=95 Identities=24% Similarity=0.180 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
++..+...+...|++++|...++++.+.. +.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~ 47 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD----------------------------------PDNADAYYNLAAAYYKL 47 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC----------------------------------CccHHHHHHHHHHHHHH
Confidence 35667788888999999999999887643 12235677789999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
|++++|.+.+++.....|. +...+..++..+...|++++|...++++.+
T Consensus 48 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 48 GKYEEALEDYEKALELDPD---NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHHhCCCc---chhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 9999999999999887654 557888899999999999999999999887
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.60 E-value=0.023 Score=57.83 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.++..|.+.|.+..|+.-++.+.+..|+......+...+..+|...|..++|......+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 4778899999999999999999999888888899999999999999999999987766543
No 173
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.60 E-value=0.00021 Score=56.61 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=61.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCC
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR-KIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p 952 (997)
+...|..++..+...|++++|+..|+++.+.+|. +..+|..++.++...| ++++|++.++++++ +.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK--LDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH--HST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH--cCc
Confidence 3457889999999999999999999999999886 8999999999999999 79999999999998 445
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.00017 Score=59.68 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 827 SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHE 906 (997)
Q Consensus 827 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 906 (997)
.|++++|+.+++++.+.. ...|+...+..++.+|.+.|++++|+++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~--------------------------------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD--------------------------------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH--------------------------------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC--------------------------------CCChhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 578899999998887642 001233456668999999999999999999
Q ss_pred HHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 907 EMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
+ .+..+. +......++.++.+.|++++|++.++++
T Consensus 50 ~-~~~~~~---~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 50 K-LKLDPS---NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp C-HTHHHC---HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred H-hCCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 8 444332 5566667799999999999999999874
No 175
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.57 E-value=0.00012 Score=48.32 Aligned_cols=33 Identities=27% Similarity=0.614 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001911 373 RIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQP 405 (997)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 405 (997)
.+|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0021 Score=64.58 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=88.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC-CHH
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR---KIDKAFELYVDMIRKDGSP-ELS 955 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~~ 955 (997)
.|...|..|+.+|...|+.+.|...|.++.+..|. |+..+..++.++..+. ...++..+++++++ ..| |+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ir 228 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD---NPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIR 228 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHH
Confidence 34568999999999999999999999999999875 8899999998886652 47899999999999 678 588
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
+...|+..+++.|++.+|...|+.|+...
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998754
No 177
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=8.8e-05 Score=47.65 Aligned_cols=31 Identities=42% Similarity=0.843 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 001911 303 VLYTKMISGLCEASLFEEAMDLLNRMRARSC 333 (997)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 333 (997)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 178
>PRK15331 chaperone protein SicA; Provisional
Probab=97.49 E-value=0.00089 Score=61.11 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLI 961 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 961 (997)
...+..+.-+..+|++++|..+|+-+...++. +...|..|+.++...+++++|+..|..+... .+ |+....+.+
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~~dp~p~f~ag 112 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCccchHH
Confidence 35566778888999999999999999988776 7888999999999999999999999999884 34 577799999
Q ss_pred HHHHhcCCHHHHHHHHHHhhc
Q 001911 962 KGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.+|...|+.+.|..-++.+.+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999988776
No 179
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.28 Score=54.59 Aligned_cols=216 Identities=15% Similarity=0.143 Sum_probs=124.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHH
Q 001911 460 GAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRN-GLIP--------DVYTYTILIDNFCK 530 (997)
Q Consensus 460 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~ 530 (997)
..=.+++|.++.++ .|.+..|..+.......-.++-|...|-..... |++. +...-.+=+.+ -
T Consensus 675 e~vgledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~ 746 (1189)
T KOG2041|consen 675 EAVGLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--F 746 (1189)
T ss_pred HHhchHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--h
Confidence 33445566655443 477788888877777777778888777654331 2211 00011111122 2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHH
Q 001911 531 AGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPN----IVTFTALIDGHCKAGDIER 606 (997)
Q Consensus 531 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~ 606 (997)
-|.+++|.+++-+|-++++ .+..+.+.|++-.+.++++. .|-..| ..+++.+...+.....++.
T Consensus 747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~ 814 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEE 814 (1189)
T ss_pred hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888766532 36666777777766666543 111111 3567777888888888888
Q ss_pred HHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 001911 607 ACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCK 686 (997)
Q Consensus 607 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 686 (997)
|.+.|..-... ...+.+|.+...+++-..+-+.+ +.+....-.+.+++..
T Consensus 815 A~~yY~~~~~~-------------------------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 815 AAKYYSYCGDT-------------------------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHhccch-------------------------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHh
Confidence 88877754321 23455565555555554444443 3445556667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 687 VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISK 734 (997)
Q Consensus 687 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 734 (997)
.|.-++|.+.|-+... |. ..+..|...+++.+|.++-++
T Consensus 865 vGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 865 VGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hchHHHHHHHHHhccC----cH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 7777777665533211 11 234456666666666666554
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.48 E-value=0.00048 Score=53.70 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 924 LLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
.++..+...|++++|++.|+++++ ..|+ ..++..++.++...|++++|..++++++...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 367788899999999999999999 5686 7899999999999999999999999987643
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.47 E-value=0.0021 Score=56.47 Aligned_cols=96 Identities=21% Similarity=0.176 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHL 960 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l 960 (997)
...++.++...|+.++|+.+|+++.........-...+..++..+...|++++|+.++++.... .|+ ......+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHH
Confidence 4558889999999999999999998865433334668888999999999999999999999984 354 3455677
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc
Q 001911 961 IKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
+.++...|+++||+..+-..+.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999998865443
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.37 E-value=0.00047 Score=54.39 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=39.1
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
...|++++|++.|+++....|+ +..++..++.+|...|++++|.+.++++.. ..|+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 3567777777777777776665 667777777777777777777777777777 4565
No 183
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.33 E-value=0.0023 Score=54.69 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=87.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE---LSTFVHLIKG 963 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~ 963 (997)
.-+.+....|+++.|++.|.+++...|. +..+|++-++++..+|+.++|+.-++++++..-... -.+|...+.+
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3456788999999999999999988775 889999999999999999999999999998421112 3578889999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCccchh
Q 001911 964 LIRVNKWEEALQLSYSICHTDINWLQE 990 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~~~~~~~~~~ 990 (997)
|...|+.+.|..-|++..+.|-+|-+.
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS~FAr~ 151 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGSKFARE 151 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCCHHHHH
Confidence 999999999999999999999888653
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.33 E-value=0.0033 Score=68.03 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001911 671 EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEH--GCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYT 748 (997)
Q Consensus 671 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 748 (997)
+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.++.++..=..-|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444444444444445555554444433 111112233344555555555555555554444445555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001911 749 EMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMI 786 (997)
Q Consensus 749 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 786 (997)
.|++.+.+.|++..|.++...|...+...+..|+..-+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 55555555555555555544444443333444443333
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.28 E-value=0.03 Score=55.50 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=38.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 001911 925 LIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHLIKGLIRVNKWEEAL 974 (997)
Q Consensus 925 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~y~~~g~~~eA~ 974 (997)
++.-|.+.|.+..|...++.+++ --|+ ..+...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE--NYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 56778889999999999999999 4676 357889999999999988543
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.28 E-value=0.0037 Score=67.68 Aligned_cols=125 Identities=10% Similarity=0.081 Sum_probs=97.2
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 001911 477 KGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRN--GLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVV 554 (997)
Q Consensus 477 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 554 (997)
.+.+.+......+++.+....+++.+..++...... ....-..|..++++.|.+.|..++++.++..=..-|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344566677777888887778888888888777654 221223455688999999999999999999888889999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001911 555 TYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKA 601 (997)
Q Consensus 555 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 601 (997)
++|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988888877777777776666666554
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.0051 Score=59.05 Aligned_cols=115 Identities=10% Similarity=-0.122 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 795 VDKCLELLRQMSS-KGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 795 ~~~A~~l~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
+..+...+..+.+ .+-.-....|..++..+...|++++|...+++......
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---------------------------- 66 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---------------------------- 66 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----------------------------
Confidence 3444444555532 22111355667777788888999999998888765320
Q ss_pred ccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH-------hcCCHHHHHHHHHH
Q 001911 874 GKTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLS-------LARKIDKAFELYVD 944 (997)
Q Consensus 874 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 944 (997)
..+ ...++..++.+|...|++++|++.++++....|. ....+..++.++. ..|++++|...+++
T Consensus 67 ----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~---~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 67 ----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF---LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred ----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 011 1236778889999999999999999998887654 4566777777776 66777655444443
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.28 E-value=0.005 Score=63.49 Aligned_cols=293 Identities=16% Similarity=0.131 Sum_probs=173.3
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH--H--cCCC-CCHHhHHHHHHH
Q 001911 648 GLCKVHKVREAHDLLDAMSVVGCEPNN----IVYDALIDGFCKVGKLDEAQMVFSKML--E--HGCN-PNVYTYGSLIDR 718 (997)
Q Consensus 648 ~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~--~--~g~~-p~~~~~~~li~~ 718 (997)
-+|+.|+......+|+..++.| .-|. .+|..|..+|.-.+++++|+++...=+ . .|-+ -...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 5899999999999999999988 4443 446777888888889999988754311 1 1100 011222233344
Q ss_pred HHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH-
Q 001911 719 LFKDKRLDLALKVISKML----EDSYA-PNVVIYTEMIDGLIKVGK--------------------TEEAYKVMLMMEE- 772 (997)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 772 (997)
+-..|.+++|+-+-.+-+ +.|-+ .....+-.+.+.|...|+ ++.|.++|.+=.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 444566666654433221 11111 112345556666665543 2334444443221
Q ss_pred ---CCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHH----hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 773 ---KGCY-PNVVTYTAMIDGFGKVGKVDKCLELLRQMS----SKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 773 ---~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
.|-. .-...|..|...|.-.|++++|+...+.-+ +.|-+. ....+..+.+++.-.|+++.|.+.++.....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 012346666667777899999998765533 233222 3567888999999999999999999765321
Q ss_pred CCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCCcchh
Q 001911 844 YWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFS---SNSAASRN 920 (997)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 920 (997)
-.++.+. .......+.|++.|.-..++++|+..+++-+... ....-...
T Consensus 265 --------------------------Aielg~r--~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 265 --------------------------AIELGNR--TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred --------------------------HHHhcch--hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 0111100 1112245678999988899999998887754321 01112456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCC
Q 001911 921 STLLLIESLSLARKIDKAFELYVDMIRKDGSP-E----LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 921 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~y~~~g~ 969 (997)
++..|+.++...|..++|+.+.++.++....- | ..+...|.+.-...|.
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 77788999999999999998888776633221 2 2234455555555554
No 189
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.28 E-value=0.00029 Score=45.14 Aligned_cols=29 Identities=34% Similarity=0.811 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 001911 374 IFHSLIHAYCRSGDYSYAYKLLSKMRKCG 402 (997)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 402 (997)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.25 E-value=0.018 Score=65.31 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=95.5
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH--------HHHHHHHHH
Q 001911 774 GCYPNVVTYTAMIDGFGK--V---GKVDKCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLL--------DEAHNLLEE 839 (997)
Q Consensus 774 g~~p~~~~~~~li~~~~~--~---g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~--------~~A~~~~~~ 839 (997)
+.+.|...|...+.+... . ++.++|..+|++.++. .|+ ...|..+..++.....+ ..+....++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345677777777776432 2 3367888888888886 675 44555544444322111 111111111
Q ss_pred HHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcch
Q 001911 840 MKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASR 919 (997)
Q Consensus 840 m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 919 (997)
... +. ....+...|..++-.+...|++++|...++++....| +.
T Consensus 410 a~a------------------------------l~--~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p----s~ 453 (517)
T PRK10153 410 IVA------------------------------LP--ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM----SW 453 (517)
T ss_pred hhh------------------------------cc--cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CH
Confidence 110 00 0112234677777777788999999999999999875 56
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001911 920 NSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVH 959 (997)
Q Consensus 920 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 959 (997)
..|..++..+...|++++|.+.|+++.. +.|...+|+.
T Consensus 454 ~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~~ 491 (517)
T PRK10153 454 LNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLYW 491 (517)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHHH
Confidence 7899999999999999999999999999 7786444443
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.24 E-value=0.024 Score=59.58 Aligned_cols=84 Identities=15% Similarity=0.072 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHhccCCCCCC-----hh-hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcc--hhhHHHHHHHHHhc-
Q 001911 862 EFIVSLGLVNEMGKTDSVPI-----VP-AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAAS--RNSTLLLIESLSLA- 932 (997)
Q Consensus 862 ~~~~a~~~~~~~~~~~~~p~-----~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~- 932 (997)
++..|.+.+++........+ .. .+...+-++...|+...|.+.+++.....|+.... ......|+.++-..
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 56666666666654332221 11 22233445556677777777777777776643222 22333444444332
Q ss_pred -CCHHHHHHHHHHH
Q 001911 933 -RKIDKAFELYVDM 945 (997)
Q Consensus 933 -g~~~~A~~~~~~~ 945 (997)
..+.+|+.-|..+
T Consensus 250 ~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 250 VEAFTEAVAEYDSI 263 (282)
T ss_dssp CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHccc
Confidence 3466666666554
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.23 E-value=0.0042 Score=52.22 Aligned_cols=78 Identities=21% Similarity=0.372 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 001911 487 SKVIGYLCDASEAEKAFLLFQEMKRNGL-IPDVYTYTILIDNFCKAG--------LIEQARNWFDEMVKEGCDPNVVTYT 557 (997)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~ 557 (997)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. .+-+.+.+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3345555555777777777777777777 677777777777766542 1334455555555555666666666
Q ss_pred HHHHHHH
Q 001911 558 ALIHAYL 564 (997)
Q Consensus 558 ~ll~~~~ 564 (997)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 5555543
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=97.20 E-value=0.019 Score=52.59 Aligned_cols=107 Identities=14% Similarity=-0.023 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG 896 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 896 (997)
......-+...|++++|..+|.-+.... .-+...|..|+.++...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d----------------------------------~~n~~Y~~GLaa~~Q~~k 85 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYD----------------------------------FYNPDYTMGLAAVCQLKK 85 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------cCcHHHHHHHHHHHHHHH
Confidence 3444555668899999999998765422 122335667888999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 897 RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
++++|+.+|..+....++ |+..+...+.++...|+.++|...++.+++ .|........+..
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~---dp~p~f~agqC~l~l~~~~~A~~~f~~a~~---~~~~~~l~~~A~~ 146 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKN---DYRPVFFTGQCQLLMRKAAKARQCFELVNE---RTEDESLRAKALV 146 (165)
T ss_pred HHHHHHHHHHHHHHcccC---CCCccchHHHHHHHhCCHHHHHHHHHHHHh---CcchHHHHHHHHH
Confidence 999999999998876554 777788899999999999999999999998 4653333333333
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.19 E-value=0.015 Score=66.07 Aligned_cols=139 Identities=15% Similarity=0.031 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh-
Q 001911 810 CAPNFVTYRVLINHCCA--SG---LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP- 883 (997)
Q Consensus 810 ~~p~~~~~~~l~~~~~~--~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~- 883 (997)
...|...|...+.+... .+ ..+.|..+|++..+.. |+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-----------------------------------P~~a~ 377 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-----------------------------------PDFTY 377 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-----------------------------------CCcHH
Confidence 35577888888877543 22 3678888888877643 5432
Q ss_pred hHHHHHHHHHhc--------CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001911 884 AYRILIDHYIKA--------GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELS 955 (997)
Q Consensus 884 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 955 (997)
.|-.++.+|... ++++.+.+..+++...+. ...++.++..++......|++++|...++++++ +.|+..
T Consensus 378 a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~ 454 (517)
T PRK10153 378 AQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE-LNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWL 454 (517)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHH
Confidence 333333333221 234556666666555321 123567788887777788999999999999999 679988
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+|..++++|...|+.++|.+.+++....+..
T Consensus 455 a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 455 NYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998776654
No 195
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.19 E-value=0.0059 Score=51.35 Aligned_cols=75 Identities=12% Similarity=0.371 Sum_probs=48.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001911 344 LCGCLRKRQLGRCKRVLSMMITEGC-YPSPRIFHSLIHAYCRS--------GDYSYAYKLLSKMRKCGFQPGYVVYNILI 414 (997)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~~~~~li 414 (997)
|.-|...+++.....+|+.+++.|+ -|++.+|+.++.+.++. +++-..+.+|++|+..++.|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333444555555555555555555 45555555555554443 23456788999999999999999999999
Q ss_pred Hhhh
Q 001911 415 GGIC 418 (997)
Q Consensus 415 ~~~~ 418 (997)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 8763
No 196
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.0046 Score=61.42 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHL 960 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l 960 (997)
.+..+..+.+.|++.+|...|...++..|++.-.+.++..|+.++...|++++|...|..+.+ -.|+ +.++.-|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k--~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK--DYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH--hCCCCCCChHHHHHH
Confidence 344666677889999999999999999998887888889999999999999999999999998 3454 6899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc
Q 001911 961 IKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
+.+..+.|+.++|...|+.+..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.17 E-value=0.053 Score=53.72 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFE 940 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 940 (997)
.+++.|.+.|.+..|+.-++.+.+..|++.....++..++.+|.+.|..+.|..
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 477899999999999999999999988877777888899999999999885543
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.14 E-value=0.42 Score=49.69 Aligned_cols=291 Identities=15% Similarity=0.097 Sum_probs=178.2
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHH--hHHHH
Q 001911 642 YGALIDGLCK--VHKVREAHDLLDAMSVVGCEPNNIVYDALIDG--FCKVGKLDEAQMVFSKMLEHGCNPNVY--TYGSL 715 (997)
Q Consensus 642 ~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l 715 (997)
|.+|-.++.. .|+-..|.+.-.+.... +..|....-.++.+ -.-.|+++.|.+-|+.|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 5555555543 56777777766554321 12333333344433 34569999999999999873 2222 12233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHH--HHHHHHHH---
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYPNVVT--YTAMIDGF--- 789 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~--~~~li~~~--- 789 (997)
.-.--+.|..+.|.++-+.....- +.-...+...+...|..|+++.|+++++.-.+. -+.++..- -..|+.+-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 333347899999999988887652 233567888899999999999999999876653 23344321 11222211
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAPNFVT-YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
.-.-+...|...-.+..+ +.||..- -..-..++.+.|+..++-.+++.+-+..
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e------------------------ 293 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE------------------------ 293 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC------------------------
Confidence 112346667666666555 3676433 3344578899999999999999887643
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 869 LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
|....+ +...+.+.|+ .++.-++++....+.-..|.......+.+-...|++..|....+.+..
T Consensus 294 -----------PHP~ia--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r- 357 (531)
T COG3898 294 -----------PHPDIA--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR- 357 (531)
T ss_pred -----------CChHHH--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence 433321 2233344444 333333333322111112666667777777778888888877777777
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHh
Q 001911 949 DGSPELSTFVHLIKGLIRV-NKWEEALQLSYSI 980 (997)
Q Consensus 949 ~~~p~~~~~~~l~~~y~~~-g~~~eA~~~~~~~ 980 (997)
..|...+|..|+++--.. |+-.++...+-+.
T Consensus 358 -~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 358 -EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred -hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 667777788888776555 7777777776654
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.14 E-value=0.43 Score=49.64 Aligned_cols=290 Identities=17% Similarity=0.130 Sum_probs=186.6
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 521 YTILIDNFC--KAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYL--KARKPSQANELFETMLSKGCIPNIVTFTALID 596 (997)
Q Consensus 521 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 596 (997)
|..|-.++. -.|+-..|.++-.+..+. +..|....-.++.+.. -.|+++.|.+-|+.|.. |+.+-..-+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 444444443 356777777776665432 2335555555555433 35899999999999875 2333222222
Q ss_pred ----HHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcC-CC
Q 001911 597 ----GHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVG-CE 671 (997)
Q Consensus 597 ----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 671 (997)
..-+.|+.+.|.++-++.-+.. +.-...+.+.+...|..|+++.|+++++.-.... +.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-----------------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-----------------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-----------------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 2346788888888888876642 3445678889999999999999999998776533 23
Q ss_pred CCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001911 672 PNNIV--YDALIDGFC---KVGKLDEAQMVFSKMLEHGCNPNVYT-YGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVV 745 (997)
Q Consensus 672 ~~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 745 (997)
++..- -..|+.+-. -..+...|...-.+..+. .||..- -..-..++++.|+..++-.+++.+-+....|++
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i- 298 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI- 298 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH-
Confidence 33321 122222211 123566677666666654 445432 223457789999999999999999987544443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINH 823 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~ 823 (997)
+. +..+.+.|+. +..-+++.... ..+| +......+..+-...|++..|..--+..... .|....|..|.+.
T Consensus 299 -a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdI 371 (531)
T COG3898 299 -AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADI 371 (531)
T ss_pred -HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHH
Confidence 32 2234455653 33333333321 1333 5566777788888999999888877776664 7888899999988
Q ss_pred HHhc-CCHHHHHHHHHHHHhc
Q 001911 824 CCAS-GLLDEAHNLLEEMKQT 843 (997)
Q Consensus 824 ~~~~-g~~~~A~~~~~~m~~~ 843 (997)
-... |+-.++..++.+....
T Consensus 372 eeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 372 EEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhhccCchHHHHHHHHHHhcC
Confidence 7765 9999999999887653
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.001 Score=52.41 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=48.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 930 SLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 930 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
...|++++|++.|+++.. ..|+ ..++..++.+|.+.|++++|..+++++......
T Consensus 2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 468999999999999999 5785 889999999999999999999999998876554
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.08 E-value=0.012 Score=52.68 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVH 959 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 959 (997)
.+..-+....+.|++++|++.|+.+....|.+.-...+-..|+.+|.+.|++++|...+++.++ +.|. ..+++.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHH
Confidence 4555677778899999999999999998888777888999999999999999999999999999 6775 357777
Q ss_pred HHHHHHhcCC---------------HHHHHHHHHHhhc
Q 001911 960 LIKGLIRVNK---------------WEEALQLSYSICH 982 (997)
Q Consensus 960 l~~~y~~~g~---------------~~eA~~~~~~~~~ 982 (997)
.+-++.++.. ..+|...+++++.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 7777777766 7777777776654
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.018 Score=58.02 Aligned_cols=101 Identities=11% Similarity=-0.037 Sum_probs=81.8
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHH
Q 001911 811 AP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILI 889 (997)
Q Consensus 811 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 889 (997)
.| |...|..|..+|...|+.+.|...|.+..+.. .++...+..++
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----------------------------------g~n~~~~~g~a 197 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA----------------------------------GDNPEILLGLA 197 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----------------------------------CCCHHHHHHHH
Confidence 45 78999999999999999999999999887642 23344455555
Q ss_pred HHHHhc---CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 890 DHYIKA---GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 890 ~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
.++..+ ....+|..+++++...+|. |..+...|+..+...|++.+|...++.|.+.
T Consensus 198 eaL~~~a~~~~ta~a~~ll~~al~~D~~---~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 198 EALYYQAGQQMTAKARALLRQALALDPA---NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 544332 3678899999999999876 8899999999999999999999999999994
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.99 E-value=0.0031 Score=50.47 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=49.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
..+|.+.+++++|++.++++....|. +...|...+.++...|++++|.+.++++++ ..|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALE--LSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCC
Confidence 35678888888999888888888775 788888888888888899999888888888 5675
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.92 E-value=0.014 Score=61.02 Aligned_cols=131 Identities=14% Similarity=0.154 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK-DKRLDLALKVISKMLEDSYAPNVVIYTEMIDG 753 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 753 (997)
.+|..++....+.+..+.|..+|.++.+.+. .+..+|......-.. .++.+.|..+|+..++. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3555666666666666666666666664322 123333333333222 34555567777666654 34455666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 001911 754 LIKVGKTEEAYKVMLMMEEKGCYPNV---VTYTAMIDGFGKVGKVDKCLELLRQMSSK 808 (997)
Q Consensus 754 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 808 (997)
+.+.|+.+.|..+|++.... +.++. ..|..++.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66667777777777766654 22222 36666666666667777777776666664
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.90 E-value=0.032 Score=49.09 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.+..++..|...|++++|+.++++.....|+-..+.....+++.++...|++++|++.+-..+.
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555667777777777777777777665443333444555566666777777777776665544
No 206
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.016 Score=57.64 Aligned_cols=105 Identities=20% Similarity=0.170 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
.|+.-+ .+.+.|++.+|...|....+.+.. + .-...++++|+..+...
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~------------------------------s-~~~~nA~yWLGe~~y~q 191 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPN------------------------------S-TYTPNAYYWLGESLYAQ 191 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCC------------------------------C-cccchhHHHHHHHHHhc
Confidence 455444 455678899999999998876511 1 12234688899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPEL 954 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 954 (997)
|++++|...|..+.+..|.+.-.+..+..|+.+....|+.++|-..|+++++ -.|+.
T Consensus 192 g~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k--~YP~t 248 (262)
T COG1729 192 GDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK--RYPGT 248 (262)
T ss_pred ccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HCCCC
Confidence 9999999999999998888777889999999999999999999999999999 57874
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.82 E-value=0.021 Score=54.67 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 001911 299 VPDTVLYTKMISGLCEA-----SLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPR 373 (997)
Q Consensus 299 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 373 (997)
..|..+|..+|..|.+. |..+=....+..|.+.|+.-|..+|+.||+.+=+ |.+- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 45666666666666543 4555555556666666666666666666665532 2211 1111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 001911 374 IFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGI 417 (997)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 417 (997)
... +-.-| -.+-+-|++++++|...|+-||..++..++..+
T Consensus 108 fQ~-~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 108 FQA-EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIF 148 (228)
T ss_pred HHH-HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Confidence 111 10011 123456788888888888888888888888776
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.81 E-value=0.0037 Score=50.05 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=52.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 926 IESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 926 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
...|...+++++|.+.++++++ ..|+ +..+..++.+|...|++++|.+.++.++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567889999999999999999 6785 78999999999999999999999999887654
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.75 E-value=0.24 Score=45.92 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=68.1
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh-CCCCC---CHHHHH
Q 001911 231 YKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK-EEFVP---DTVLYT 306 (997)
Q Consensus 231 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p---~~~~~~ 306 (997)
..|++.--..|..++.+.|+..+|...|++....-+.-|......+.++....+++.+|...+++ +...| ...+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45777777788888889999999999998887655556677777777777777777777777665 11112 112233
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC
Q 001911 307 KMISGLCEASLFEEAMDLLNRMRAR 331 (997)
Q Consensus 307 ~li~~~~~~g~~~~A~~~~~~m~~~ 331 (997)
.+.+.|...|++.+|..-|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 4455666666666666666666554
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.73 E-value=0.022 Score=54.47 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=72.3
Q ss_pred CCCchhHHHHHHHHHhc-----CC---HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHH
Q 001911 267 SMDGFTLGCFAYSLCKA-----GR---WKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVV 338 (997)
Q Consensus 267 ~~~~~~~~~li~~~~~~-----g~---~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 338 (997)
..+..+|..++..|.+. |. ...|++.+++.|+..|..+|+.|++++=+ |++- -..+|+.+--+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h------- 114 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH------- 114 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc-------
Confidence 56888999999999865 43 45688889999999999999999998865 2221 11222222111
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 001911 339 TFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGD 387 (997)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 387 (997)
.-.+-+-|.+++++|...|+.||..++..|++.|.+.+.
T Consensus 115 ----------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ----------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 123456677888888888888888888888888765554
No 211
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.73 E-value=1.1 Score=47.86 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=44.9
Q ss_pred hHHHHHHH--HHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001911 884 AYRILIDH--YIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELS 955 (997)
Q Consensus 884 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 955 (997)
.-+.|.++ +..+|++.++.-.-.=..+.. |++.++..++.++....+|++|..++.+ ++|+..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~ia----PS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~ 526 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIA----PSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNER 526 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchh
Confidence 45556654 567888888875544444443 4888899888888888999999888776 556543
No 212
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.66 E-value=0.041 Score=57.53 Aligned_cols=132 Identities=11% Similarity=0.105 Sum_probs=100.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001911 710 YTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK-VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG 788 (997)
Q Consensus 710 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 788 (997)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|.++|+...+. +..+...|...++-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888889999999999998653 2233444444444233 56777799999999886 55688889999999
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAPN---FVTYRVLINHCCASGLLDEAHNLLEEMKQTY 844 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 844 (997)
+.+.|+.+.|..+|++.+.. +.++ ...|...+.-=.+.|+++...++.+++.+..
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999986 3332 3489999998899999999999999987753
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.66 E-value=0.051 Score=48.73 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..-.....+.|++++|.+.|+.+...+ |. | .-...+-..|+.+|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~-----------------------------g-~ya~qAqL~l~yayy 58 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-PF-----------------------------G-EYAEQAQLDLAYAYY 58 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CC-----------------------------C-cccHHHHHHHHHHHH
Confidence 4444455556677899999999999887654 11 1 111234567899999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC---------------HHHHHHHHHHHHHcCCCCC
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK---------------IDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~~~~~p~ 953 (997)
+.|++++|+..+++.++..|.++.-+.++...+.++..... ..+|...++++++ .-|+
T Consensus 59 ~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~--~yP~ 131 (142)
T PF13512_consen 59 KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR--RYPN 131 (142)
T ss_pred HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH--HCcC
Confidence 99999999999999999998877667777777766666554 7888888888888 5676
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.61 E-value=0.14 Score=56.37 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=54.6
Q ss_pred CCceeHHHHHHHHHhcCChHHHHHHH---------HHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCC
Q 001911 637 PNVYTYGALIDGLCKVHKVREAHDLL---------DAMSVVGCEPNNIVYDALIDGFCKVGKLD--EAQMVFSKMLEHGC 705 (997)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~ 705 (997)
+-...+.+-+-.|...|.+++|.++- +.+... ..+...++..-++|.+..+.. +.+.-++++.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 33444444455667777777776432 111111 123344556666777766543 44455667778887
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 706 NPNVYTYGSLIDRLFKDKRLDLALKVISK 734 (997)
Q Consensus 706 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 734 (997)
.|+... +...++-.|++.+|.++|.+
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 777654 34556677888888888865
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.027 Score=59.05 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+.+|+.+|.+.+++.+|++..++.+..+|+ |...+..-+.+|...|+++.|...|+++++ +.|+ ..+-..|
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~---N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el 331 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN---NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAEL 331 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 346778999999999999999999999999876 889999999999999999999999999999 8896 5666677
Q ss_pred HHHHHhcCCHHHH-HHHHHHhhc
Q 001911 961 IKGLIRVNKWEEA-LQLSYSICH 982 (997)
Q Consensus 961 ~~~y~~~g~~~eA-~~~~~~~~~ 982 (997)
+.+-.+.-.+++. .++|..|..
T Consensus 332 ~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 332 IKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 7776666555444 777777755
No 216
>PRK11906 transcriptional regulator; Provisional
Probab=96.58 E-value=0.11 Score=56.08 Aligned_cols=94 Identities=13% Similarity=-0.005 Sum_probs=76.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H--HHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-L--STF 957 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~--~~~ 957 (997)
|..+...++.++...++.+.|..+|+++...+|+ ...+|...++.+...|+.++|.+.++++++ +.|. . .+.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~ 411 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVI 411 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHH
Confidence 3446677888888899999999999999999887 788999999999999999999999999999 7896 2 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Q 001911 958 VHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 958 ~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
-..++.|+..+ .++|++++-+-
T Consensus 412 ~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 412 KECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHcCCc-hhhhHHHHhhc
Confidence 33444677665 78899888653
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.57 E-value=0.084 Score=59.58 Aligned_cols=182 Identities=17% Similarity=0.158 Sum_probs=120.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHH----hcCCHHHH
Q 001911 764 YKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK-GCAPNF-----VTYRVLINHCC----ASGLLDEA 833 (997)
Q Consensus 764 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-----~~~~~l~~~~~----~~g~~~~A 833 (997)
.-+|+-+... ++|. +..++...+-.||-+.+++++.+..+. |+.-.. ..|...+..++ .....+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3444545443 3433 345555566677888888877776653 222111 12333333333 24577888
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHhcCC
Q 001911 834 HNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYR-ILIDHYIKAGRLEVALELHEEMTSFS 912 (997)
Q Consensus 834 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~ 912 (997)
.++++.+.+.+ |+...|. .-+..+...|+.++|++.++++....
T Consensus 253 ~~lL~~~~~~y-----------------------------------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q 297 (468)
T PF10300_consen 253 EELLEEMLKRY-----------------------------------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQ 297 (468)
T ss_pred HHHHHHHHHhC-----------------------------------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch
Confidence 88888888765 6655443 45678889999999999999876522
Q ss_pred -CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHhhccC
Q 001911 913 -SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKW-------EEALQLSYSICHTD 984 (997)
Q Consensus 913 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~-------~eA~~~~~~~~~~~ 984 (997)
.........+..+++++....+|++|...+.++.+..-.....-.+..+-+|...|+. ++|.+++.++....
T Consensus 298 ~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 298 SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 1113456677789999999999999999999999833221133344677788899999 89999988775543
No 218
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.50 E-value=0.018 Score=53.57 Aligned_cols=101 Identities=19% Similarity=0.092 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNS--AASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
.=++-+.+.|++++|..-|..++...|.. ......|..-+.+..+.++++.|+..-.++++ +.|. ..+....+.+
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHH
Confidence 34567788999999999999999876543 22345566667777888999999999999999 7786 5677788999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCccch
Q 001911 964 LIRVNKWEEALQLSYSICHTDINWLQ 989 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~~~~~~~~~ 989 (997)
|.+..++++|+.-|+++++.+..-.+
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 99999999999999999987765543
No 219
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.47 E-value=0.37 Score=47.81 Aligned_cols=166 Identities=13% Similarity=0.164 Sum_probs=90.9
Q ss_pred hccCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKG-CAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSL 867 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~ 867 (997)
.+.|++++|.+.|+.+.... ..| ...+...++.++.+.+++++|...+++....+..+.-..|...+++.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~------ 118 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY------ 118 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH------
Confidence 45666666666666666541 111 3445555666666666666666666666655433333333333333220
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--cchhh------------HHHHHHHHHhcC
Q 001911 868 GLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA--ASRNS------------TLLLIESLSLAR 933 (997)
Q Consensus 868 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~------------~~~l~~~~~~~g 933 (997)
+..+. +....+.-..+|..-|++.....|++. ++... =..++.-|.+.|
T Consensus 119 --~~~i~---------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 119 --FFQID---------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred --hccCC---------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00000 000011122334444455555555442 11111 112455667788
Q ss_pred CHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 934 KIDKAFELYVDMIRKDGSPE----LSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 934 ~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
.+..|..-++.|++. .|+ ..++..+..+|...|..++|.+.-+-|
T Consensus 182 ~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 182 AYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred ChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 999999999999985 454 357778888999999999988876644
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.45 E-value=0.012 Score=63.25 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=58.8
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 879 VPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 879 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
.|+ ...++.++.+|...|++++|+..|+++++.+|+...-..+|.+++.+|.+.|++++|++.++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344 4588899999999999999999999999998762211256999999999999999999999999994
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.44 E-value=0.13 Score=47.98 Aligned_cols=70 Identities=23% Similarity=0.299 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR-----KDGSPELST 956 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 956 (997)
+...++..+...|++++|+++.+++...+|. +...|..++.+|...|+..+|.+.|+++.+ .|+.|.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY---DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4566788889999999999999999999886 899999999999999999999999998843 577887543
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.41 E-value=0.0065 Score=49.38 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSF---SSNSAA-SRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+++.++..|...|++++|++.++++.+. .+...+ -..++..++.++...|++++|++.++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888888888888888888887643 111111 245666777777777777777777777654
No 223
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.38 E-value=0.14 Score=52.50 Aligned_cols=178 Identities=12% Similarity=0.026 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCC--CHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYP---NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG---CAP--NFVT 816 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p--~~~~ 816 (997)
.|-.+..++-+..++.+++.+-+.-... |..| -.....++..++.-.+.++++++.|+...+-- -.| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4444555555555555555555443332 2222 11233456667777788999999998876521 122 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG 896 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 896 (997)
+..|...|....++++|..+..+..+......+..+.. .-.....+.|..++...|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~------------------------kyr~~~lyhmaValR~~G 220 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL------------------------KYRAMSLYHMAVALRLLG 220 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH------------------------HHHHHHHHHHHHHHHHhc
Confidence 88899999999999999988877654211100000000 001113455778888999
Q ss_pred CHHHHHHHHHHHhcC---CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 897 RLEVALELHEEMTSF---SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++-+|.+..+++.+. .++-.........++.+|...|+.|.|+.-|+++..
T Consensus 221 ~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 221 RLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred ccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 988888888877653 122122344556788899999999999999988754
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.35 E-value=1.8 Score=46.04 Aligned_cols=143 Identities=18% Similarity=0.239 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 001911 674 NIVYDALIDGFCKVGKLDEAQMVFSKMLEHG-CNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVI-YTEMI 751 (997)
Q Consensus 674 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li 751 (997)
..+|..+++...+..-.+.|..+|-++.+.| +.+++..+++++..++ .|+...|..+|+.-... -||... -+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3556667777777777777778888777777 4567777777776443 56667777777765443 233332 34445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 752 DGLIKVGKTEEAYKVMLMMEEKGCYPN--VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
..+...++-+.|..+|+...++ +..+ ...|..+|.--..-|+...+..+-++|.+. -|...+......
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~S 543 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTS 543 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHH
Confidence 5666677777777777755443 1112 346777777667777777777777777664 454444333333
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.33 E-value=0.0055 Score=49.80 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 919 RNSTLLLIESLSLARKIDKAFELYVDMIRKD--GSP---E-LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 919 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p---~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..++..++.+|...|++++|+..|+++++.. ..+ + ..++..++.+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578899999999999999999999998631 222 2 45788999999999999999999998754
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.32 E-value=1.4 Score=44.51 Aligned_cols=220 Identities=23% Similarity=0.144 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001911 688 GKLDEAQMVFSKMLEHGCNP-NVYTYGSLIDRLFKDKRLDLALKVISKMLED-SYAPNVVIYTEMIDGLIKVGKTEEAYK 765 (997)
Q Consensus 688 g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 765 (997)
+....+...+.......... ....+......+...+.+..+...+...... ........+..+...+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444444432211 2334444444555555555555555554431 112233344444444445555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 766 VMLMMEEKGCYPNVVTYTAMID-GFGKVGKVDKCLELLRQMSSKGCAP----NFVTYRVLINHCCASGLLDEAHNLLEEM 840 (997)
Q Consensus 766 ~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m 840 (997)
.+.........+ ......... .+...|++++|...+.+.... .| ....+......+...++.++|...+.+.
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 555554432221 111111111 344555555555555555331 22 1222222223333444444444444444
Q ss_pred HhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcch
Q 001911 841 KQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASR 919 (997)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 919 (997)
.... .. ....+..+...+...++++.|...+..+....|. ..
T Consensus 194 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 236 (291)
T COG0457 194 LKLN----------------------------------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---NA 236 (291)
T ss_pred HhhC----------------------------------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---cH
Confidence 3321 11 2334445555555555555555555555554322 23
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 920 NSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 920 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..+..+...+...+.++++...+.+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 237 EALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444445555555555555
No 227
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.30 E-value=2 Score=45.98 Aligned_cols=49 Identities=27% Similarity=0.247 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHh----CCCCCcHHhHHHHHHHHHh
Q 001911 301 DTVLYTKMISGLCEASLFEEAMDLLNRMRA----RSCIPNVVTFRILLCGCLR 349 (997)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~t~~~ll~~~~~ 349 (997)
|.+.-+..+.++...|++.++..++++|.. +.+..|..+|+.++-.+.+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 444456777888888888888888887764 3444778888876655543
No 228
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=2.8 Score=47.10 Aligned_cols=171 Identities=13% Similarity=0.099 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHhHHHHHH----------HHHhcCChhHHHHHHHHHHHCCCCC
Q 001911 200 GKLLNVLIHKCCRNGFWNVALEELGRLKDF-GYKPTQAIYNALIQ----------VFLRADRLDTAYLVYREMLDAGFSM 268 (997)
Q Consensus 200 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~----------~~~~~g~~~~a~~~~~~m~~~g~~~ 268 (997)
+++|..|...-.+.-.++-|...|-+.... |++ .-..|-. .-+--|++++|.++|-+|-+++
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik----~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK----LVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh----HHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 368998888877777788888777765542 321 1111111 1223578899999988887665
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 001911 269 DGFTLGCFAYSLCKAGRWKEALELIEKEEFVP----DTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILL 344 (997)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 344 (997)
..|.++.+.|++-...++++..+... -...|+.+..-+...-.+++|.+.+..-... ...+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 35778888899999999988733222 2457888888888888888888888754321 2345
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001911 345 CGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSK 397 (997)
Q Consensus 345 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (997)
.++.+..++++-+.+-.. ++.+....-.+.+++...|.-++|.+.|-+
T Consensus 830 ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 555555555544333332 244455566677777777777777776644
No 229
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.21 E-value=2.1 Score=45.37 Aligned_cols=111 Identities=17% Similarity=0.255 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCC 825 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~ 825 (997)
+.+.-+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++... + -++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 44445556667788888887766552 35788888888899988998887765443 1 13356777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELH 905 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 905 (997)
+.|+..+|..++.++. +..-+..|.+.|++.+|.+..
T Consensus 249 ~~~~~~eA~~yI~k~~-------------------------------------------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP-------------------------------------------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhCC-------------------------------------------hHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888886632 134667788888888887765
Q ss_pred HHHh
Q 001911 906 EEMT 909 (997)
Q Consensus 906 ~~~~ 909 (997)
-+..
T Consensus 286 ~~~k 289 (319)
T PF04840_consen 286 FKEK 289 (319)
T ss_pred HHcC
Confidence 5443
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.21 E-value=0.039 Score=59.32 Aligned_cols=69 Identities=9% Similarity=0.067 Sum_probs=61.3
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHhhcc-CCcc
Q 001911 917 ASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-L---STFVHLIKGLIRVNKWEEALQLSYSICHT-DINW 987 (997)
Q Consensus 917 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~y~~~g~~~eA~~~~~~~~~~-~~~~ 987 (997)
.+...|+.++.+|...|++++|+..|+++++ +.|+ . .+|+.++.+|...|+.++|++.+++.++. ...|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 4789999999999999999999999999999 7897 4 35999999999999999999999999885 3333
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.15 E-value=1.8 Score=43.86 Aligned_cols=224 Identities=22% Similarity=0.175 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHH
Q 001911 723 KRLDLALKVISKMLEDSYA-PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYPNVVTYTAMIDGFGKVGKVDKCLE 800 (997)
Q Consensus 723 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~ 800 (997)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++++++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12345555555566666666666666555431 122344445555555556666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 801 LLRQMSSKGCAPNFVTYRVLIN-HCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 801 l~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
.+.........+ ......... .+...|++++|...+++... ..+. ..
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~------------------------------~~ 164 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE-LDPE------------------------------LN 164 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC------------------------------cc
Confidence 666666542222 111222222 55666666666666666543 1110 00
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV 958 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 958 (997)
.....+......+...++.++|...+.++....+.. ....+..+...+...+++++|...+..... ..|+ ...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ 240 (291)
T COG0457 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDD--DAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALY 240 (291)
T ss_pred chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc--chHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHh
Confidence 011122223333555666666666666666543210 244555566666666666666666666666 3443 44455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 959 HLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 959 ~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.++..+...|.++++...+.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 241 NLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555556666666655544
No 232
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.15 E-value=0.56 Score=51.85 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 519 YTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGH 598 (997)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 598 (997)
.+...+..-+.+...+.-|-++|..|-.. ..++......+++++|..+-+...+. .|| .|......+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqwL 814 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQWL 814 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHHh
Confidence 33444444444555566666666665421 12455555667777776666554432 233 233344444
Q ss_pred HHcCCHHHHHH
Q 001911 599 CKAGDIERACR 609 (997)
Q Consensus 599 ~~~g~~~~A~~ 609 (997)
+...++++|.+
T Consensus 815 AE~DrFeEAqk 825 (1081)
T KOG1538|consen 815 AENDRFEEAQK 825 (1081)
T ss_pred hhhhhHHHHHH
Confidence 45555544443
No 233
>PRK11906 transcriptional regulator; Provisional
Probab=96.10 E-value=0.2 Score=54.15 Aligned_cols=84 Identities=14% Similarity=0.014 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEAL 974 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~ 974 (997)
....+|.++.+++.+.+|. |+.+...++.++...++++.|...++++.. +.|+ ..+|+..++..+-.|+.++|.
T Consensus 318 ~~~~~a~~~A~rAveld~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 318 LAAQKALELLDYVSDITTV---DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 4577899999999999876 999999999999999999999999999999 8898 789999999999999999999
Q ss_pred HHHHHhhccC
Q 001911 975 QLSYSICHTD 984 (997)
Q Consensus 975 ~~~~~~~~~~ 984 (997)
+.+++.+...
T Consensus 393 ~~i~~alrLs 402 (458)
T PRK11906 393 ICIDKSLQLE 402 (458)
T ss_pred HHHHHHhccC
Confidence 9999865543
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.092 Score=55.20 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK 894 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 894 (997)
.++..+.-+|.+.+.+.+|+...++.+... +++..+++.-+.+|..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~----------------------------------~~N~KALyRrG~A~l~ 303 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD----------------------------------PNNVKALYRRGQALLA 303 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC----------------------------------CCchhHHHHHHHHHHh
Confidence 356778888899999999999998887653 4566678889999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC-HHHHHHHHHHHHHc
Q 001911 895 AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK-IDKAFELYVDMIRK 948 (997)
Q Consensus 895 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 948 (997)
.|+++.|+..|+++++..|. |..+-..|..+-.+..+ .+...++|..|..+
T Consensus 304 ~~e~~~A~~df~ka~k~~P~---Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 304 LGEYDLARDDFQKALKLEPS---NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999886 77777777766655554 45557889999873
No 235
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=2 Score=42.42 Aligned_cols=136 Identities=11% Similarity=0.015 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK-----GCAPNFVTYRVLI 821 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~~~~~l~ 821 (997)
.+.++..+...|.+.-...++++.++...+.++.....|.+.-.+.|+.+.|..+|++..+. |+.-+..+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34455555555566666666666666554555555566666666666666666666654332 1122222223333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001911 822 NHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVA 901 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 901 (997)
..+.-++++-+|...+.++.... ..+....+..+-++.-.|+..+|
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D----------------------------------~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD----------------------------------PRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred hheecccchHHHHHHHhhccccC----------------------------------CCchhhhchHHHHHHHHHHHHHH
Confidence 34445556666666665554432 11222333344444445666667
Q ss_pred HHHHHHHhcCCCCCC
Q 001911 902 LELHEEMTSFSSNSA 916 (997)
Q Consensus 902 ~~~~~~~~~~~~~~~ 916 (997)
++.++.|.+..|+..
T Consensus 306 iK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 306 LKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHhccCCccc
Confidence 777776666655433
No 236
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=2 Score=42.39 Aligned_cols=140 Identities=11% Similarity=-0.001 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 001911 676 VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMI---- 751 (997)
Q Consensus 676 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li---- 751 (997)
+.+.++..+.-.|.+.-...++.+.++...+.++.....|++.-.+.|+.+.|...|++..+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445555556666666667777777766655566666666666667777777777777555432233333333332
Q ss_pred -HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001911 752 -DGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYR 818 (997)
Q Consensus 752 -~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 818 (997)
..|.-++++..|...+.+....+.. |+..-|.-.-+..-.|+..+|++..+.|... .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 2344456666677777666654322 4444444444444467777777777777765 45443333
No 237
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.76 E-value=4.9 Score=46.73 Aligned_cols=284 Identities=14% Similarity=0.074 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------cCCCCCHHhHHHHHHHHHhc
Q 001911 655 VREAHDLLDAMSVVGCEPNNIVYDALIDG-----FCKVGKLDEAQMVFSKMLE-------HGCNPNVYTYGSLIDRLFKD 722 (997)
Q Consensus 655 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 722 (997)
...|.+.++.....| +......+... +....+.+.|+.+|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888887766 23332223222 3455689999999999877 55 333555667777664
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hcc
Q 001911 723 K-----RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK---VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF--GKV 792 (997)
Q Consensus 723 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~~ 792 (997)
. +.+.|+.++.+..+.|. |+.... +...+.. ..+...|.++|....+.|.. ....+.++.-.. ...
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcC
Confidence 3 67889999999988874 444332 2333332 24578999999999988754 222222222222 234
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHH
Q 001911 793 GKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNE 872 (997)
Q Consensus 793 g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 872 (997)
.+.+.|..++++..++| .|...--...+..+.. +.++.+...+..+.+.+....... + ..+..
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~--------------a-~~l~~ 440 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSN--------------A-AYLLD 440 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhH--------------H-HHHHH
Confidence 57899999999999987 4443333333344444 777777777766655331110000 0 00000
Q ss_pred hccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc----CCHHHHHHHHHHHHHc
Q 001911 873 MGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA----RKIDKAFELYVDMIRK 948 (997)
Q Consensus 873 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~ 948 (997)
.......+ .....+.+.+...+.+..... +......|+..|... .+++.|...|..+...
T Consensus 441 ~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~g-----~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 441 QSEEDLFS-----------RGVISTLERAFSLYSRAAAQG-----NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred hccccccc-----------cccccchhHHHHHHHHHHhcc-----CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 00000000 001235555666666666543 666667777766554 3588888888887775
Q ss_pred CCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhccCC
Q 001911 949 DGSPELSTFVHLIKGLIRV---NKWEEALQLSYSICHTDI 985 (997)
Q Consensus 949 ~~~p~~~~~~~l~~~y~~~---g~~~eA~~~~~~~~~~~~ 985 (997)
+ ......|+..+-.- .++..|.++++...+.+.
T Consensus 505 ~----~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 505 G----AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDS 540 (552)
T ss_pred h----hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCc
Confidence 4 55555666555321 126778888877766543
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=5.1 Score=45.90 Aligned_cols=86 Identities=15% Similarity=0.287 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 745 VIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHC 824 (997)
Q Consensus 745 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~ 824 (997)
.+.+--+.-+...|+..+|.++-.+.. -||-..|..-+.++...+++++-+++-+.+.. +.-|.-.+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHH
Confidence 344445555667788888888777654 35777788888889999999887777665542 23455578889
Q ss_pred HhcCCHHHHHHHHHHH
Q 001911 825 CASGLLDEAHNLLEEM 840 (997)
Q Consensus 825 ~~~g~~~~A~~~~~~m 840 (997)
.++|+.+||.+++.+.
T Consensus 755 ~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV 770 (829)
T ss_pred HhcccHHHHhhhhhcc
Confidence 9999999999888654
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.47 Score=48.25 Aligned_cols=150 Identities=12% Similarity=0.096 Sum_probs=70.4
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHH
Q 001911 791 KVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLV 870 (997)
Q Consensus 791 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 870 (997)
-.|++.+|...++++++. .+.|...+...-++|.-.|+.+.-...++++... |.
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn------------------------ 168 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WN------------------------ 168 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cC------------------------
Confidence 345555555555555554 2224555555555555556555555555554432 11
Q ss_pred HHhccCCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 871 NEMGKTDSVPIVPAYR----ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMI 946 (997)
Q Consensus 871 ~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 946 (997)
|+.|.|. ..+.++.+.|-+++|++..+++++.++. +.-+...++..+.-.|+.+++.+..++--
T Consensus 169 ---------~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~---D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 169 ---------ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRF---DCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred ---------CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc---chHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 2222111 2233444555555666555555555433 44444444444444555555555533321
Q ss_pred HcCCCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 947 RKDGSP-E---LSTFVHLIKGLIRVNKWEEALQLSYS 979 (997)
Q Consensus 947 ~~~~~p-~---~~~~~~l~~~y~~~g~~~eA~~~~~~ 979 (997)
. ...- + ..-|-|-+-.|.+.+.++.|+++|+.
T Consensus 237 d-~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 237 D-DWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred c-chhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 1 0010 0 12344455555555555555555544
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.73 E-value=2.5 Score=42.16 Aligned_cols=188 Identities=17% Similarity=0.172 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHH
Q 001911 745 VIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC--YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK-GCAPNFVTYRVLI 821 (997)
Q Consensus 745 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~l~ 821 (997)
..|+.-+. -.+.|++++|.+.|+.+....+ +-...+-..++-++.+.+++++|+..+++.... +-.|| .-|..-+
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Yl 113 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYL 113 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHH
Confidence 34444333 3456888888888888876421 123445556667777888888888888887764 22333 2233333
Q ss_pred HHHHh-------cCCHHHHHHHH---HHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh-hHHHHHH
Q 001911 822 NHCCA-------SGLLDEAHNLL---EEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP-AYRILID 890 (997)
Q Consensus 822 ~~~~~-------~g~~~~A~~~~---~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~ 890 (997)
.+++. ..+..-+...+ ++..+.+ |...-+ ..|...+..+.. ... .=..+++
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-PnS~Ya------------~dA~~~i~~~~d-----~LA~~Em~Iar 175 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-PNSRYA------------PDAKARIVKLND-----ALAGHEMAIAR 175 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-CCCcch------------hhHHHHHHHHHH-----HHHHHHHHHHH
Confidence 33332 12333333333 3333332 221100 001111111100 000 0124678
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPEL 954 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 954 (997)
.|.+.|.+..|..-++.+.+..|........+..+..+|...|..++|...-+-+.. + .|+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~-N-~p~s 237 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA-N-YPDS 237 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh-c-CCCC
Confidence 899999999999999999988776555667777888899999999999886555444 2 4554
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.65 E-value=1.9 Score=46.24 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 749 EMIDGLIKVGKTEEAYKVMLMMEEKG---CYPNVVTYTAMIDGFGK---VGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 749 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
.++-.|....+++.-+++.+.+.... +.-....-...+-++.+ .|+.++|++++..++...-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44455777778888888888777541 11112222234445556 7888888888888665555677778877777
Q ss_pred HHH
Q 001911 823 HCC 825 (997)
Q Consensus 823 ~~~ 825 (997)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 664
No 242
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=6 Score=45.94 Aligned_cols=181 Identities=19% Similarity=0.229 Sum_probs=117.5
Q ss_pred ccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001911 448 KINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTS--TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILI 525 (997)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 525 (997)
..+...-+..+++...++-|+.+-+.- +..++.. ......+.+.+.|++++|...+-+-+.. +.| ..+|
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 344555667777888888888776543 2223321 2233345566789999999888766543 222 2356
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 001911 526 DNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIE 605 (997)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 605 (997)
.-|.....+.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 6667777788888899999999876 66677789999999999888777765544 2311 112344566777777777
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 001911 606 RACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAM 665 (997)
Q Consensus 606 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 665 (997)
+|..+-..... +..... -.+-..+++++|++.+..+
T Consensus 481 ~a~~LA~k~~~---------------------he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK---------------------HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc---------------------CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 77776655432 122222 2344568899999988876
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.63 E-value=0.31 Score=50.06 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=142.0
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHC-CCCCCHHHHHHHHHHHhccC
Q 001911 721 KDKRLDLALKVISKMLED--SYAPNVVIYTEMIDGLIKVGKTEEAYKVML----MMEEK-GCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~-g~~p~~~~~~~li~~~~~~g 793 (997)
...+.++|+..+.+-+.. +...-..++..+.++.+..|.+++++..-- ...+. .-..-...|..+.+++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444332 001123455566666777777776654321 11111 00012345677777888888
Q ss_pred CHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHH
Q 001911 794 KVDKCLELLRQMSSK-GCAP---NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGL 869 (997)
Q Consensus 794 ~~~~A~~l~~~m~~~-g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 869 (997)
++.+++.+-+.-... |..| ......++..+....+.++++++.|+.......
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~------------------------ 153 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH------------------------ 153 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh------------------------
Confidence 888888887776652 4444 234455577777778889999998887654210
Q ss_pred HHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-------cchhhHHHHHHHHHhcCCHHHHHH
Q 001911 870 VNEMGKTDSVPI--VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA-------ASRNSTLLLIESLSLARKIDKAFE 940 (997)
Q Consensus 870 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~ 940 (997)
+...|. ...+..|+..|....++++|.-+..++.+.-.... -...+...++-++...|..-.|.+
T Consensus 154 ------~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e 227 (518)
T KOG1941|consen 154 ------NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAME 227 (518)
T ss_pred ------ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 011222 22577889999999999999988887765421111 112334456677788888777777
Q ss_pred HHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 941 LYVDMIR----KDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 941 ~~~~~~~----~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
.-+++.+ .|-.|- .-....++++|...|+.+.|..-|+.....
T Consensus 228 ~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 228 CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 7776654 343332 446778999999999999998888775443
No 244
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.58 E-value=0.013 Score=38.25 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=24.7
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 001911 942 YVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEAL 974 (997)
Q Consensus 942 ~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~ 974 (997)
|+++++ +.|+ +.+|+.|+.+|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 567777 6785 788888888888888888875
No 245
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=95.53 E-value=0.0013 Score=57.98 Aligned_cols=58 Identities=5% Similarity=-0.059 Sum_probs=43.1
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSA 85 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (997)
-||.||++.|++||.|. +--+.++...+......++.+.||+ .|+++-+++|++++-.
T Consensus 12 ilH~GHi~~L~~Ak~lG-d~liVv~a~de~~~~~~k~~pi~~~---------~qR~evl~s~ryVD~v 69 (140)
T COG0615 12 ILHPGHIEFLRQAKKLG-DELIVVVARDETVIKRKKRKPIMPE---------EQRAEVLESLRYVDEV 69 (140)
T ss_pred EechhHHHHHHHHHHhC-CeEEEEEeccHHHHHhcCCCCCCCH---------HHHHHHHHcCcchhee
Confidence 38999999999999999 3333334444444544556778888 9999999999976533
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.46 E-value=0.033 Score=38.98 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 921 STLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 921 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
++..++..|...|++++|++.|+++++ ..|+ +.++..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence 344455555555555555555555555 3443 44444443
No 247
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=6.5 Score=45.09 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=64.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 001911 879 VPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFV 958 (997)
Q Consensus 879 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 958 (997)
.|+--.|..-+.+++..++|++-+++-+... .+..|.-+...|.+.|+.+||.++.-+. .+ +.
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk--------sPIGy~PFVe~c~~~~n~~EA~KYiprv-----~~----l~ 774 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK--------SPIGYLPFVEACLKQGNKDEAKKYIPRV-----GG----LQ 774 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccC--------CCCCchhHHHHHHhcccHHHHhhhhhcc-----CC----hH
Confidence 4777778888899999999988777666554 2346777888999999999999886653 22 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 001911 959 HLIKGLIRVNKWEEALQLSYS 979 (997)
Q Consensus 959 ~l~~~y~~~g~~~eA~~~~~~ 979 (997)
....+|.+.|++.+|.++.-+
T Consensus 775 ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 775 EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 678889999999999887643
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.40 E-value=4.7 Score=43.13 Aligned_cols=145 Identities=17% Similarity=0.215 Sum_probs=107.3
Q ss_pred ceeHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH-HHHH
Q 001911 639 VYTYGALIDGLCKVHKVREAHDLLDAMSVVG-CEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTY-GSLI 716 (997)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li 716 (997)
..+|...++...+..-++.|..+|-+..+.+ +.+++.++++++..++ .|+...|..+|+--...- ||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 3467778888888888999999999999888 6788889999998766 488889999998766542 344333 4566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001911 717 DRLFKDKRLDLALKVISKMLEDSYAPN--VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF 789 (997)
Q Consensus 717 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 789 (997)
..+...++-+.|..+|+..++. +..+ -..|..+|..-..-|++..|..+=++|.+. .|-..+-.....-|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 6778889999999999966543 1222 467889999888899999998888888774 44443333333333
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.33 E-value=0.035 Score=38.87 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIE 927 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 927 (997)
.++..++..|...|++++|+++|+++.+..|+ |...|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhhh
Confidence 35778999999999999999999999999886 8888887753
No 250
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=1.6 Score=42.42 Aligned_cols=22 Identities=9% Similarity=0.126 Sum_probs=14.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhcC
Q 001911 890 DHYIKAGRLEVALELHEEMTSF 911 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~ 911 (997)
..-...+++.+|+++|++....
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557777777777776543
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.97 E-value=0.22 Score=46.32 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSS-----KGCAPNFVTY 817 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~ 817 (997)
....++..+...|++++|..+...+....+. |...|..+|.+|...|+..+|++.|+++.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445556666677777777777777765332 666777777777777777777777776643 3777765543
No 252
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.96 E-value=4.7 Score=43.26 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001911 757 VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK---------VGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCAS 827 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~ 827 (997)
.|+.++|.+++..+....-.+++.+|..+...|-. ....++|+..|.+.-+. .|+..+=-.++..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHc
Confidence 55666666666654444344455555555444421 12267778877777664 35544333334444444
Q ss_pred CC
Q 001911 828 GL 829 (997)
Q Consensus 828 g~ 829 (997)
|.
T Consensus 273 g~ 274 (374)
T PF13281_consen 273 GH 274 (374)
T ss_pred CC
Confidence 54
No 253
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.93 E-value=5.8 Score=47.98 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
..|+.-+..++++-+|-++..+....+. .....|++...|++|+......
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd~~----------~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSDPE----------EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcCHH----------HHHHHHhhHhHHHHHHHHHHhc
Confidence 3455556666666666666666554211 1223344555666666654443
No 254
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.88 E-value=0.49 Score=44.58 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIR 966 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~ 966 (997)
.++..+...|++++|+..++.....+.+......+-..|+......|++++|+..++...+.+. ........++++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 4567889999999999999988865433223344445678888889999999999888665322 23446678999999
Q ss_pred cCCHHHHHHHHHHhhccC
Q 001911 967 VNKWEEALQLSYSICHTD 984 (997)
Q Consensus 967 ~g~~~eA~~~~~~~~~~~ 984 (997)
.|+-++|+.-|++.++++
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 999999999999988865
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.87 E-value=1.3 Score=50.14 Aligned_cols=163 Identities=16% Similarity=0.098 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001911 749 EMIDGLIKVGKTEEAYKVMLMMEEKG-CYPNV------VTYTAMIDGFG----KVGKVDKCLELLRQMSSKGCAPNFVTY 817 (997)
Q Consensus 749 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~------~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~~~ 817 (997)
.++....-.|+-+.+++.+.+..+.+ +. .+ ..|...+..++ ...+.+.|.++++.+.++ -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 33444444566666666665554421 11 11 12333333322 356778899999999886 6765555
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 001911 818 R-VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG 896 (997)
Q Consensus 818 ~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 896 (997)
. .-.+.+...|+.++|...+++..... ..++ +-....+..++..+...+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q-----~~~~-------------------------Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQ-----SEWK-------------------------QLHHLCYFELAWCHMFQH 319 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccch-----hhHH-------------------------hHHHHHHHHHHHHHHHHc
Confidence 4 34466778899999999998765311 0000 011234667888899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH-HhcCCH-------HHHHHHHHHHHH
Q 001911 897 RLEVALELHEEMTSFSSNSAASRNSTLLLIESL-SLARKI-------DKAFELYVDMIR 947 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~-------~~A~~~~~~~~~ 947 (997)
+|++|.+.+.++.+.+.. +...|..+..+| ...|+. ++|.+++.++..
T Consensus 320 ~w~~A~~~f~~L~~~s~W---Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKESKW---SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999999886543 555666555544 445777 888888887754
No 256
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.85 E-value=1.3 Score=42.35 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 919 RNSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 919 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
..+|..|+.-+...|+.++|..+|+-++...
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 4677788888888899999999999888743
No 257
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.84 E-value=1.8 Score=37.87 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=40.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 925 LIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 925 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
-+..+..+|+-++-.+++..+.+. -.|+++....++.+|.+.|...+|-+++++.++.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344556778888888888887653 367788888888888888888888888888888775
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=1.1 Score=45.42 Aligned_cols=150 Identities=14% Similarity=0.141 Sum_probs=96.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHH
Q 001911 785 MIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFI 864 (997)
Q Consensus 785 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 864 (997)
-.......|++.+|..+|+...... .-+...-..++.+|...|+.+.|..++..+....
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------------------- 198 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-------------------- 198 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--------------------
Confidence 3345677888888888888888752 2245667778888888999999888888765421
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 865 VSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVD 944 (997)
Q Consensus 865 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 944 (997)
..........-+..+.+.....+...+-++.... |+ |...-..++..+...|+.++|.+.+-.
T Consensus 199 -------------~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad-Pd---d~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 199 -------------QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD-PD---DVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred -------------hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0000011122344555555555555555555443 33 677777788888888888888888877
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 001911 945 MIRKDGSP-ELSTFVHLIKGLIRVNKWEE 972 (997)
Q Consensus 945 ~~~~~~~p-~~~~~~~l~~~y~~~g~~~e 972 (997)
+++++..- |..+-..|...+...|.-+.
T Consensus 262 ~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 262 LLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 77754333 35666677777777774333
No 259
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.76 E-value=6.8 Score=41.61 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=76.0
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLF 720 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 720 (997)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+... +-++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666677788888877766664 57777788888888888888776665432 113467777888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001911 721 KDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLM 769 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 769 (997)
+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777661 224566777888888888765544
No 260
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.62 E-value=5.5 Score=48.15 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=21.2
Q ss_pred CCCceeHHHHHHHHHhcC--ChHHHHHHHHHHHh
Q 001911 636 EPNVYTYGALIDGLCKVH--KVREAHDLLDAMSV 667 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 667 (997)
.|+ .....+|..|++.+ .+++|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 444 44556777888877 67777777777664
No 261
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.58 E-value=2 Score=41.10 Aligned_cols=161 Identities=15% Similarity=0.074 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 001911 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG-CAPNFVTYRVLIN 822 (997)
Q Consensus 744 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~l~~ 822 (997)
+..||.|.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++.--|+++-|.+-+...-+.+ -.|=...|..++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3456666666666666666666666666653332222222222 2234466666665555554431 0111222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCC------CCChhhHHHHHHHHHhcC
Q 001911 823 HCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDS------VPIVPAYRILIDHYIKAG 896 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~p~~~~~~~l~~~~~~~g 896 (997)
..-++.+|..-+.+-.+. .+...|-+.+-++--.-+....++.++..... +--..+|.-|++.|...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 333455554444332111 11111111111111111111112222221111 011246778999999999
Q ss_pred CHHHHHHHHHHHhcC
Q 001911 897 RLEVALELHEEMTSF 911 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~ 911 (997)
+.++|..+|+-+...
T Consensus 252 ~~~~A~~LfKLaian 266 (297)
T COG4785 252 DLDEATALFKLAVAN 266 (297)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999988764
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.48 E-value=1.3 Score=49.41 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMT 909 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 909 (997)
..|..|++...++|+++-|++.|++..
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 345555555555555555555555443
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.42 E-value=7.7 Score=42.37 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=32.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 646 IDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLE 702 (997)
Q Consensus 646 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 702 (997)
..+.-+.|+++...+........ .++...+.++... +.++++++....+++..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45566778888755555554422 2344455554433 77888888877777655
No 264
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.29 E-value=0.13 Score=52.13 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGL 964 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y 964 (997)
..-++-|.++|.+++|+..|.+.....|. |+..+..-+.+|.+..++..|..--+.++. +.-. ..+|...+.+-
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~---NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--Ld~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH---NPVYHINRALAYLKQKSFAQAEEDCEAAIA--LDKLYVKAYSRRMQAR 175 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC---CccchhhHHHHHHHHHHHHHHHHhHHHHHH--hhHHHHHHHHHHHHHH
Confidence 34668899999999999999999988765 888899999999999999999888888877 3332 66888889999
Q ss_pred HhcCCHHHHHHHHHHhhccCCc
Q 001911 965 IRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 965 ~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
...|+..||.+-++.++....+
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcc
Confidence 9999999999999888776554
No 265
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=94.17 E-value=0.0071 Score=60.01 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=47.8
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSA 85 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (997)
-|||||+|+|-|||.|-.- +++|.-+|+---+.++-.+|+. .|+|+.++-|++++.-
T Consensus 19 m~HyGHanaLrQAkalGdk--LivGVHsDeeI~~nKGpPV~t~---------eERy~~v~~ikWVDEV 75 (358)
T KOG2803|consen 19 MVHYGHANALRQAKALGDK--LIVGVHSDEEITLNKGPPVFTD---------EERYEMVKAIKWVDEV 75 (358)
T ss_pred hhhhhhhHHHHHHHHhCCe--EEEEecchHHHHhcCCCCcccH---------HHHHHHHhhcchhhhh
Confidence 4899999999999988765 8999988886656665578888 8999999999986543
No 266
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.03 E-value=5.5 Score=41.78 Aligned_cols=132 Identities=14% Similarity=0.263 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC-
Q 001911 464 YEKAYNVIREMMSKGFIPDTSTYSKVIGYLCD--AS----EAEKAFLLFQEMKRNGL---IPDVYTYTILIDNFCKAGL- 533 (997)
Q Consensus 464 ~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~- 533 (997)
+++.+.+++.|.+.|+.-+..+|.+..-.... .. ....|..+++.|++..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788889999998888777664333322 22 36778999999998743 2345555555544 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcC-C--hhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 534 ---IEQARNWFDEMVKEGCDPNVV-TYTALIHAYLKAR-K--PSQANELFETMLSKGCIPNIVTFTALIDG 597 (997)
Q Consensus 534 ---~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g-~--~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 597 (997)
.+.+..+|+.+.+.|+..+.. -+.+-+-++.... . ...+.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 467778888888878765433 3333333333322 1 34788999999999999888777665433
No 267
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.92 E-value=0.7 Score=43.49 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=77.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001911 822 NHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVA 901 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 901 (997)
+-+.+.|++++|..-|.+..... |+... ......|..-+.++.+.+.|+.|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~----------------------------e~rsIly~Nraaa~iKl~k~e~a 153 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTST----------------------------EERSILYSNRAAALIKLRKWESA 153 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccH----------------------------HHHHHHHhhhHHHHHHhhhHHHH
Confidence 34567788888888887776542 11110 01123456667788999999999
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 902 LELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
+.-..++++..|. ...+...-+.+|.+..++++|++-|+++++ ..|. ..+-...+++
T Consensus 154 I~dcsKaiel~pt---y~kAl~RRAeayek~ek~eealeDyKki~E--~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 154 IEDCSKAIELNPT---YEKALERRAEAYEKMEKYEEALEDYKKILE--SDPSRREAREAIARL 211 (271)
T ss_pred HHHHHhhHhcCch---hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCcchHHHHHHHHhc
Confidence 9999999998765 666666678889999999999999999999 6675 3444444443
No 268
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.86 E-value=0.052 Score=35.35 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=26.0
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHH
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAF 939 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 939 (997)
|+++++..|+ +..+|..++..|...|++++|+
T Consensus 2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677777776 8888888888888888888875
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.71 E-value=2.5 Score=38.86 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=36.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001911 750 MIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGL 829 (997)
Q Consensus 750 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 829 (997)
++..+...+.......+++.+...+. .+...++.++..|++.+ .++.++.++. .++......+++.|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444555555555555554432 34445555555554432 2233333331 0122223334555555555
Q ss_pred HHHHHHHHHHH
Q 001911 830 LDEAHNLLEEM 840 (997)
Q Consensus 830 ~~~A~~~~~~m 840 (997)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=2.1 Score=43.76 Aligned_cols=121 Identities=12% Similarity=-0.016 Sum_probs=94.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001911 824 CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALE 903 (997)
Q Consensus 824 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 903 (997)
+...|+..+|....+++.+++ +.+..++..--++|...|+.+.-..
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~----------------------------------PtDlla~kfsh~a~fy~G~~~~~k~ 158 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY----------------------------------PTDLLAVKFSHDAHFYNGNQIGKKN 158 (491)
T ss_pred hhccccccHHHHHHHHHHHhC----------------------------------chhhhhhhhhhhHHHhccchhhhhh
Confidence 446788999999999988865 2344456666688889999999999
Q ss_pred HHHHHhcC-CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 904 LHEEMTSF-SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 904 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
.++++..+ +++.+-..+....++.++...|-+++|++..++..+ ++| |.=+...++.++--.|++.|+.++..+-
T Consensus 159 ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 159 AIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99998765 544444466666778888889999999999999998 778 4556677888888999999998887653
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.57 E-value=12 Score=41.22 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=34.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 783 TAMIDGFGKVGKVDKCLELLRQMSSKGCA-PNFVTYRVLINHCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 783 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 841 (997)
..+..++.+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34555556667777777777666653111 123455566666666677777766666643
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=7.3 Score=39.74 Aligned_cols=149 Identities=15% Similarity=0.121 Sum_probs=98.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 001911 682 DGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTE 761 (997)
Q Consensus 682 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 761 (997)
......|++.+|...|+........ +......++.+|...|+.+.|..++..+-..--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456789999999999999887655 455667888999999999999999988654321112222223344455544444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 001911 762 EAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCA-PNFVTYRVLINHCCASGLLDEA 833 (997)
Q Consensus 762 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A 833 (997)
+...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.++.+... -|...-..++..+..-|..+.+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 444444444332 126667777888899999999999988887765322 2556666777777776644443
No 273
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.42 E-value=5.1 Score=35.22 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=72.6
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 001911 650 CKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLAL 729 (997)
Q Consensus 650 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 729 (997)
.-.|..++..+++.+.... .+..-+|.+|--....-+-+-..++++..-+ -.|.. .+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHH
Confidence 3356777888888777653 2444455555444444444444444444332 12222 223333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 001911 730 KVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG 809 (997)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 809 (997)
..+-.+- .+......-++.+.++|+-++-.++...+... -.+++...-.+..+|.+.|+..++.+++++..++|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3322211 12333445566677788888877887777642 34577777778888888888888888888888877
Q ss_pred CC
Q 001911 810 CA 811 (997)
Q Consensus 810 ~~ 811 (997)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 43
No 274
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.35 E-value=2.7 Score=37.54 Aligned_cols=96 Identities=16% Similarity=0.220 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001911 301 DTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIH 380 (997)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 380 (997)
|..++..+|-++++.|+.+....+++..-. +.++.. ...+. .-....+.|+..+..++++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345566667777777777766666654432 111100 00000 0112346788999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHh
Q 001911 381 AYCRSGDYSYAYKLLSKMRK-CGFQPGYVVYNILIGG 416 (997)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~ 416 (997)
+|+..|++..|+++.+...+ -++.-+...|..|+.-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999998864 5677778888887764
No 275
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=93.31 E-value=0.0097 Score=54.87 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=49.9
Q ss_pred ccccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCCC
Q 001911 17 KSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSAA 86 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (997)
.-||.||.+.|++|+.+.++-++++|-.+|+.....++..-||. .++.+.+.+|...+...
T Consensus 12 Dl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~---------~eR~~~l~~~~~Vd~Vi 72 (150)
T cd02174 12 DLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTE---------EERYEAVRHCKWVDEVV 72 (150)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCH---------HHHHHHHHhcCCCCeEE
Confidence 46899999999999999977889999999986655554455666 89999999998876543
No 276
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.31 E-value=1.3 Score=38.55 Aligned_cols=92 Identities=14% Similarity=0.023 Sum_probs=72.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcC
Q 001911 752 DGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK-GCAP--NFVTYRVLINHCCASG 828 (997)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p--~~~~~~~l~~~~~~~g 828 (997)
-++...|+++.|++.|.+.... .+-+...||.-..++.-+|+.++|++-+++.++. |-.- -...|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4567789999999999998886 3347888999999999999999999999998874 3221 1234555566788899
Q ss_pred CHHHHHHHHHHHHhcC
Q 001911 829 LLDEAHNLLEEMKQTY 844 (997)
Q Consensus 829 ~~~~A~~~~~~m~~~~ 844 (997)
+.+.|..-|+...+.+
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 9999999999887765
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.28 E-value=2.1 Score=41.05 Aligned_cols=99 Identities=18% Similarity=0.072 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHH--HH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS---PELS--TF 957 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~--~~ 957 (997)
..+..+++.|.+.|+.++|++.|.++.+.......-...+..++......+++..+...++++...-.. ++.. .-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 467889999999999999999999999876543445666777888888899999999888887653222 2211 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 958 VHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 958 ~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
..-+-.+...++|.+|-+.+=.+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 223333446789999988876543
No 278
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.18 E-value=3 Score=46.49 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=106.5
Q ss_pred HHHcCChHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHH
Q 001911 210 CCRNGFWNVALEELGRLKD-FGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKE 288 (997)
Q Consensus 210 y~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 288 (997)
..-.|+++++.+....-.- ..+ | ..-.+.++.-+-+.|..+.|+.+-..-. .-.....++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 3446888888776652111 112 2 4457888888999999999987754322 23445667899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 001911 289 ALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGC 368 (997)
Q Consensus 289 A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 368 (997)
|.++.++ .++...|..|.....++|+++-|.+.|.+... |..|+-.|.-.|+.+.-..+.+.....|
T Consensus 337 A~~~a~~---~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 337 ALEIAKE---LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HHHHCCC---CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHh---cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 9998877 34788999999999999999999999987653 4566667778888888888887777766
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001911 369 YPSPRIFHSLIHAYCRSGDYSYAYKLLSKM 398 (997)
Q Consensus 369 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (997)
-++....++...|++++..+++.+-
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2566667777889998888887654
No 279
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.16 E-value=0.93 Score=40.43 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 587 NIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 587 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
|..++..++-++++.|+++....+.+..-.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg 30 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG 30 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC
Confidence 456777788888888888888877776543
No 280
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.96 E-value=12 Score=39.31 Aligned_cols=137 Identities=14% Similarity=0.252 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHH
Q 001911 388 YSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKA 467 (997)
Q Consensus 388 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 467 (997)
+++...+++.|.+.|...+..+|-+.............. ....+|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~-----------------------------------~~~~ra 122 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYD-----------------------------------EIIQRA 122 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHH-----------------------------------HHHHHH
Confidence 445667778888888887777666533222111111111 223445
Q ss_pred HHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC-C--HHH
Q 001911 468 YNVIREMMSKG---FIPDTSTYSKVIGYLCDASE----AEKAFLLFQEMKRNGLIPD-VYTYTILIDNFCKAG-L--IEQ 536 (997)
Q Consensus 468 ~~ll~~m~~~g---~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g-~--~~~ 536 (997)
..+++.|++.. ..++...+..++.. ...+ .+.+...|+.+.+.|+..+ ..-+.+-+-+++... . ...
T Consensus 123 ~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r 200 (297)
T PF13170_consen 123 KEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVAR 200 (297)
T ss_pred HHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHH
Confidence 55666665542 12344455555433 2222 3455666666666555432 222222222222211 1 346
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Q 001911 537 ARNWFDEMVKEGCDPNVVTYTALIH 561 (997)
Q Consensus 537 A~~~~~~m~~~g~~~~~~~~~~ll~ 561 (997)
+.++++.+.+.|+++....|..+.-
T Consensus 201 ~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 201 VIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHcCCccccccccHHHH
Confidence 6777777777777766666665443
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.96 E-value=7.9 Score=42.29 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA-ASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-------- 952 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-------- 952 (997)
..+|..++..+.++|+++.|...+.++....+... ..+.+....+..+...|+..+|+..++..++.....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 45788888999999999999999999887542221 245566666777788899999999988887711111
Q ss_pred ------------------C-------HHHHHHHHHHHHhc------CCHHHHHHHHHHhhccCCccch
Q 001911 953 ------------------E-------LSTFVHLIKGLIRV------NKWEEALQLSYSICHTDINWLQ 989 (997)
Q Consensus 953 ------------------~-------~~~~~~l~~~y~~~------g~~~eA~~~~~~~~~~~~~~~~ 989 (997)
+ ..++..++.-.... +..+++.+.++...+....|..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 1 12445555555555 6677777888777776665543
No 282
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.91 E-value=3 Score=40.57 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=37.4
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHhcCCCCCCcch---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 885 YRILIDHYIKA-GRLEVALELHEEMTSFSSNSAASR---NSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 885 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
...++.+|... .++++|+..|+.+.+...+-..+. ..+...+.--...++|.+|+.+|+++....
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666655 778888888888766432211111 122222222244577888888888877743
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=2.7 Score=41.15 Aligned_cols=141 Identities=18% Similarity=0.150 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh--CCCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHH
Q 001911 202 LLNVLIHKCCRNGFWNVALEELGRLKD--FGYKPTQ--AIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFA 277 (997)
Q Consensus 202 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 277 (997)
.++.-...|...|.++-|-..+++.-+ .++.|+. ..|..-+..+...++...|..++ ..+.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~---------------gk~s 157 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY---------------GKCS 157 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH---------------HHhh
Confidence 456666667777777776666665432 2344442 23444444444444444443333 3344
Q ss_pred HHHHhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHh---CCCCCcHHhHHHHHHH
Q 001911 278 YSLCKAGRWKEALELIEKEE-------FVPDT-VLYTKMISGLCEASLFEEAMDLLNRMRA---RSCIPNVVTFRILLCG 346 (997)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~t~~~ll~~ 346 (997)
+.|.+..++.+|-..|.+.+ ..++. ..|...|-.+.-..++..|...++.--. ..-.-|..+...||.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 56667777777766555411 11121 2234444455555566666666655221 1112234455555555
Q ss_pred HHhcCChhHHHH
Q 001911 347 CLRKRQLGRCKR 358 (997)
Q Consensus 347 ~~~~g~~~~a~~ 358 (997)
| ..|+.+++..
T Consensus 238 y-d~gD~E~~~k 248 (308)
T KOG1585|consen 238 Y-DEGDIEEIKK 248 (308)
T ss_pred h-ccCCHHHHHH
Confidence 4 3444444443
No 284
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.86 E-value=3.8 Score=37.60 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcC
Q 001911 129 KLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECD 178 (997)
Q Consensus 129 ~l~~~~~~~vl~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~ 178 (997)
.++++.|+..+...+.+....+|..++... + ..++..++.++.+|++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKY 54 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHH
Confidence 456666666666666777777777776655 2 24555667777776654
No 285
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=24 Score=41.36 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 001911 168 YNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLR 247 (997)
Q Consensus 168 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 247 (997)
...-+.++.+...+..|..+-..-.. +.+........-+.-+.+.|++++|...+-+-... +.|+ .++.-|..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 33445556655556555554433211 22222223333344455567777777665544321 2222 23333444
Q ss_pred cCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh
Q 001911 248 ADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK 295 (997)
Q Consensus 248 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (997)
..+...-..+++.+.+.|+.. ..-...|+++|.+.++.+.-.++.++
T Consensus 410 aq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhc
Confidence 444455555666666666532 22334566666666666666666554
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.63 E-value=4.1 Score=37.69 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...|..-++ +...+..++|+..|..+...+... -|... ....+....
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~-------------------------------YpvLA-~mr~at~~a 105 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGS-------------------------------YPVLA-RMRAATLLA 105 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCc-------------------------------chHHH-HHHHHHHHh
Confidence 344444443 456678899999998887765221 12222 122455677
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAAS-RNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWE 971 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~ 971 (997)
..|+...|+..|.++..-.|-..+- ...-..-++.+...|-|+......+.+..- -+| ...+-..|+-+-.+.|++.
T Consensus 106 ~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a 184 (221)
T COG4649 106 QKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFA 184 (221)
T ss_pred hcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchH
Confidence 8889999999999887654321111 222233455566778888887777775543 234 3567778888888999999
Q ss_pred HHHHHHHHhhc
Q 001911 972 EALQLSYSICH 982 (997)
Q Consensus 972 eA~~~~~~~~~ 982 (997)
+|.++|+.+.+
T Consensus 185 ~A~~~F~qia~ 195 (221)
T COG4649 185 KAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHc
Confidence 99999988766
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.61 E-value=0.19 Score=33.20 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
++..|+.+|.+.|+|++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888744
No 288
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.58 E-value=21 Score=40.16 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 485 TYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDV-YTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAY 563 (997)
Q Consensus 485 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 563 (997)
.|+.+|..-.....++.+..++..+... .|.. .-|.....-=.+.|..+.+.++|++-+.. ++.+...|...+.-+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 3444443333333334444445444433 2222 22333333334455555566666555542 333444444433322
Q ss_pred H-hcCChhHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 564 L-KARKPSQANELFETMLSK-GC-IPNIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 564 ~-~~g~~~~A~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
. ..|+.+.....|+..... |. -.+...|...|..-...+++.....+++++.+
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 2 235555555555554432 11 11223344444444455555555555555544
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.08 E-value=0.29 Score=31.79 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 922 TLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 922 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
|..++.++...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444444
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.05 E-value=3 Score=40.03 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=54.7
Q ss_pred chhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001911 196 KEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPT--QAIYNALIQVFLRADRLDTAYLVYREMLD 263 (997)
Q Consensus 196 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 263 (997)
.+.....+..++.-|++.|+.++|++.|.++++....+. ...+-.+++.....+++..+.........
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344456799999999999999999999999998765554 45677888888889999988887776654
No 291
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.01 E-value=1.4 Score=43.81 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=52.5
Q ss_pred CChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHH
Q 001911 249 DRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEA-SLFEEAMDLLNR 327 (997)
Q Consensus 249 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~ 327 (997)
+.++--...+..|.+.|++.|..+|+.|++.+-|.. +.|..+.- ..+..- ..-+-++.++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk-------------fiP~nvfQ----~~F~HYP~QQ~C~I~vLeq 148 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK-------------FIPQNVFQ----KVFLHYPQQQNCAIKVLEQ 148 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc-------------cccHHHHH----HHHhhCchhhhHHHHHHHH
Confidence 344444555566667777666666666666543221 11211111 111111 123568889999
Q ss_pred HHhCCCCCcHHhHHHHHHHHHhcCC
Q 001911 328 MRARSCIPNVVTFRILLCGCLRKRQ 352 (997)
Q Consensus 328 m~~~~~~p~~~t~~~ll~~~~~~g~ 352 (997)
|...|+.||..+-..+++++.+.+-
T Consensus 149 ME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 149 MEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHcCCCCchHHHHHHHHHhccccc
Confidence 9999999999999999998877664
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.44 E-value=0.35 Score=31.98 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMT 909 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~ 909 (997)
|..|+.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 293
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.35 E-value=0.38 Score=31.12 Aligned_cols=24 Identities=13% Similarity=0.193 Sum_probs=9.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 924 LLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.++.++...|++++|++.++++++
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333333444444444444444333
No 294
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=34 Score=39.84 Aligned_cols=169 Identities=12% Similarity=0.153 Sum_probs=93.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHh
Q 001911 206 LIHKCCRNGFWNVALEELGRLKDFGYKP---TQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCK 282 (997)
Q Consensus 206 li~~y~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 282 (997)
=|....+.++|++|+..-.... |..| -.......+..+...|+++.|....-.|... +...|-.-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 3567788899999998776544 3334 2345677788888899999998888877643 23344444444445
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHH
Q 001911 283 AGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSM 362 (997)
Q Consensus 283 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 362 (997)
.|+..+...++-..+...+...|-.++..+.. .+.. .|.+.... .+++...-..++++. ..++
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~----~F~e~i~~-Wp~~Lys~l~iisa~--~~q~--------- 498 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK----GFLELIKE-WPGHLYSVLTIISAT--EPQI--------- 498 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH----HHHHHHHh-CChhhhhhhHHHhhc--chHH---------
Confidence 55544444443332223345567777766655 2222 22222221 122222222222211 1111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001911 363 MITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRK 400 (997)
Q Consensus 363 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (997)
.+. .-+...-..|+..|...+++..|..++-...+
T Consensus 499 -~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 499 -KQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred -Hhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 111 11222334489999999999999999877654
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.27 E-value=0.41 Score=30.97 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 954 LSTFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 954 ~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
+.++..++.+|...|++++|++.+++.+...
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3578999999999999999999999987654
No 296
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.26 E-value=1.8 Score=43.18 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001911 798 CLELLRQMSSKGCAPNFVTYRVLINHCCASGL 829 (997)
Q Consensus 798 A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 829 (997)
+++++++|...|+.||..+-..|++++.+.+-
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 56667777777777777777777776665553
No 297
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.22 E-value=1.3 Score=38.95 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=59.3
Q ss_pred cchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccchhh
Q 001911 917 ASRNSTLLLIESLSLAR---KIDKAFELYVDMIRKDGSPE--LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQEE 991 (997)
Q Consensus 917 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~~ 991 (997)
+...+-..++|++.... +..+.+.+++++.+. -.|+ -...+.|+-++.+.++|+.++++++.+++...+|.+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 36667778899988764 477888899998873 3454 56788889999999999999999999999988887653
No 298
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.22 E-value=35 Score=39.79 Aligned_cols=145 Identities=17% Similarity=0.104 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HH----cCCHH
Q 001911 689 KLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGL---IK----VGKTE 761 (997)
Q Consensus 689 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~----~g~~~ 761 (997)
+...|..++.+..+.| .|...--...+..+.. ++.+.+.-.+..+.+.|.+.....-..++... .. ..+..
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchh
Confidence 5566666666666665 2222222222222333 55555555555554443221111111111100 00 12455
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 001911 762 EAYKVMLMMEEKGCYPNVVTYTAMIDGFGKV----GKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCA----SGLLDEA 833 (997)
Q Consensus 762 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A 833 (997)
.+...+.+....| +......|-..|..- .+++.|...+.....++ ....-.+...+.. .. +..|
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a 528 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLA 528 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHH
Confidence 5666666666554 444444554444332 34677777777776654 3333333333322 23 5677
Q ss_pred HHHHHHHHhc
Q 001911 834 HNLLEEMKQT 843 (997)
Q Consensus 834 ~~~~~~m~~~ 843 (997)
..++++..+.
T Consensus 529 ~~~~~~~~~~ 538 (552)
T KOG1550|consen 529 KRYYDQASEE 538 (552)
T ss_pred HHHHHHHHhc
Confidence 7777766553
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.17 E-value=0.39 Score=31.14 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
.+|..++.+|...|++++|+..+++.++...+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57899999999999999999999998876543
No 300
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.77 E-value=1.7 Score=42.99 Aligned_cols=92 Identities=15% Similarity=0.093 Sum_probs=65.1
Q ss_pred hcCCHHHHHHHHHHHhcC----CCCCCcchhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCC-----HHHH
Q 001911 894 KAGRLEVALELHEEMTSF----SSNSAASRNSTLLLIESLSLARK-------IDKAFELYVDMIRKDGSPE-----LSTF 957 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p~-----~~~~ 957 (997)
..-.+++|++.|.-+.-. ......-...+..++|.|...|+ ...|...|+++.+..-.|. ....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 344667777766655421 11111235677788999988887 5677788888887654442 4578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 958 VHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 958 ~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
+.+|.++.+.|++++|.+.+.++.+.+-
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 8899999999999999999999987543
No 301
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.26 E-value=78 Score=42.20 Aligned_cols=62 Identities=13% Similarity=-0.031 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
...|...+.....+|+++.|...+-++.+.. -+.++...+..+.+.|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-----~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-----LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-----cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3478888899999999999999988887754 4557777888888999999999999999864
No 302
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.21 E-value=33 Score=37.79 Aligned_cols=165 Identities=9% Similarity=0.055 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
|....-+++..+...-+..-..-+..+|.+-| .+...|..++..|... ..++-..+++++.+..+ .|...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33344445555555555555555555555532 2344455555555554 33444555555555421 12222223333
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc-----hhhHHHHHHhHhHhHHHHHHHHHHhccC-CCCCChhhHHHHHHHHHhcC
Q 001911 823 HCCASGLLDEAHNLLEEMKQTYWPTH-----VAGYRKVIEGFSREFIVSLGLVNEMGKT-DSVPIVPAYRILIDHYIKAG 896 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g 896 (997)
.|.+ ++.+.+..+|.++.....|.. ...|..+.+...++...-..++..++.. |..-....+..+-+-|....
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 3333 555555555555544433311 1112222332223333333334444332 22222345556667888999
Q ss_pred CHHHHHHHHHHHhcCC
Q 001911 897 RLEVALELHEEMTSFS 912 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~~ 912 (997)
++.+|++++.-+.+.+
T Consensus 220 N~~eai~Ilk~il~~d 235 (711)
T COG1747 220 NWTEAIRILKHILEHD 235 (711)
T ss_pred CHHHHHHHHHHHhhhc
Confidence 9999999999888765
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.10 E-value=27 Score=36.56 Aligned_cols=161 Identities=12% Similarity=0.136 Sum_probs=86.6
Q ss_pred HhcCChHHHHHHHHHHHhcC--CCCCH------HHHHHHHHHHHhcC-CHHHHHHHHHHHHHc----C----CCCCH---
Q 001911 650 CKVHKVREAHDLLDAMSVVG--CEPNN------IVYDALIDGFCKVG-KLDEAQMVFSKMLEH----G----CNPNV--- 709 (997)
Q Consensus 650 ~~~g~~~~A~~~~~~m~~~~--~~~~~------~~~~~li~~~~~~g-~~~~A~~~~~~m~~~----g----~~p~~--- 709 (997)
.+.|+.+.|...+.+..... ..|+. ..|+.-.. ....+ +++.|...+++..+. + ..|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788888888888776532 23332 22333333 33445 888887777765543 1 12232
Q ss_pred --HhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 710 --YTYGSLIDRLFKDKRLD---LALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTA 784 (997)
Q Consensus 710 --~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (997)
.++..++.+|...+..+ +|..+++.+... .+..+..+-.-+..+.+.++.+++.+.+.+|... +.-....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHH
Confidence 35556677777666543 455555555433 2222444445556666677888888888888765 2212233333
Q ss_pred HHHHH---hccCCHHHHHHHHHHHHhCCCCCCH
Q 001911 785 MIDGF---GKVGKVDKCLELLRQMSSKGCAPNF 814 (997)
Q Consensus 785 li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 814 (997)
.+..+ .. .....|...+..++..-+.|..
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 33333 33 2334555555555544344443
No 304
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.02 E-value=16 Score=33.95 Aligned_cols=140 Identities=12% Similarity=0.178 Sum_probs=84.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001911 236 AIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEA 315 (997)
Q Consensus 236 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~ 315 (997)
.+|...++ +...+..++|+.-|.++.+.|...-+. -.--.+.....+.
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Ypv-------------------------------LA~mr~at~~a~k 107 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPV-------------------------------LARMRAATLLAQK 107 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchH-------------------------------HHHHHHHHHHhhc
Confidence 34544444 456677888888888888877542111 1111223345556
Q ss_pred CChHHHHHHHHHHHhCCCCCcHH-hHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001911 316 SLFEEAMDLLNRMRARSCIPNVV-TFRILLCG--CLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAY 392 (997)
Q Consensus 316 g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 392 (997)
|+..+|...|++.-.....|-.. -...|=.+ +...|.++....-.+-+...|-+.....-..|.-+-.|.|++..|.
T Consensus 108 gdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~ 187 (221)
T COG4649 108 GDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAK 187 (221)
T ss_pred ccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHH
Confidence 66666666666665544344332 22222222 3456777777777776666665555666677777778889999999
Q ss_pred HHHHHHHHCCCCCCH
Q 001911 393 KLLSKMRKCGFQPGY 407 (997)
Q Consensus 393 ~~~~~m~~~g~~p~~ 407 (997)
+.|..+....-.|..
T Consensus 188 ~~F~qia~Da~aprn 202 (221)
T COG4649 188 SWFVQIANDAQAPRN 202 (221)
T ss_pred HHHHHHHccccCcHH
Confidence 988888764434433
No 305
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.00 E-value=28 Score=36.71 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLA----RKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVN------ 968 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g------ 968 (997)
..|...+.++.... +......++..|... .++++|...|+++.+.|- ......++ .+...|
T Consensus 172 ~~A~~~~~~aa~~~-----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~ 242 (292)
T COG0790 172 KKALYLYRKAAELG-----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKA 242 (292)
T ss_pred HhHHHHHHHHHHhc-----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhh
Confidence 46777777776653 555666666666442 367888888888877653 45555565 555555
Q ss_pred ---------CHHHHHHHHHHhhccCCc
Q 001911 969 ---------KWEEALQLSYSICHTDIN 986 (997)
Q Consensus 969 ---------~~~eA~~~~~~~~~~~~~ 986 (997)
+...|...+......+..
T Consensus 243 ~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 243 AFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 666777777766665544
No 306
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.98 E-value=15 Score=40.45 Aligned_cols=65 Identities=25% Similarity=0.138 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..+-..|+.+..+.|+.+||++.++.+.+..|. ..+..+...|+.++...+.+.++..++.+--+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-LDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-cchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 334456888899999999999999999876542 23566888899999999999999999888543
No 307
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.77 E-value=18 Score=36.70 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.++.....|..+|.+.+|+++.+++++.+|- +...+..|+..+...|+--.|.+.|+++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL---~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL---SEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh---hhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455667889999999999999999998765 888888899999999998888888887754
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.64 E-value=3.1 Score=42.59 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 001911 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSS-----KGCAPNFVTYR 818 (997)
Q Consensus 744 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~~ 818 (997)
..++..++..+...|+.+.+.+.++++.+.... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 346677778888888888888888888887544 778888888888888888888888888765 47888777666
Q ss_pred HHHHH
Q 001911 819 VLINH 823 (997)
Q Consensus 819 ~l~~~ 823 (997)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55554
No 309
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=2 Score=44.08 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=83.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSF-SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
+|.-=++-|.+.+++..|...|.+.++. .++...+...|.+-+.+-...|++..|+.--.+++. +.|+ ..+++.-+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhh
Confidence 6777889999999999999999997754 444456788888888888889999999999999998 8897 78999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhc
Q 001911 962 KGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.++.+..++.+|..+.+...+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999888876544
No 310
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.20 E-value=54 Score=38.80 Aligned_cols=220 Identities=17% Similarity=0.082 Sum_probs=90.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh---cC
Q 001911 753 GLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG-CAPNFVTYRVLINHCCA---SG 828 (997)
Q Consensus 753 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~l~~~~~~---~g 828 (997)
.+.-.|+++.|.+++-+ ..+...+.+.+...+.- .|-+.-.-..-..+.... -.|....+..|+..|.+ ..
T Consensus 267 ~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~---~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAY---YGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHH---TT------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHH---cCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 34456888888887766 11122234433333322 222211111112232210 01122557778888775 45
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHH--------------HHHHHHHHhccC-CCCC-Chh---hHHHHH
Q 001911 829 LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFI--------------VSLGLVNEMGKT-DSVP-IVP---AYRILI 889 (997)
Q Consensus 829 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~--------------~a~~~~~~~~~~-~~~p-~~~---~~~~l~ 889 (997)
+..+|.+++--+.....+.....+...+....-... ..-+.+++-.+. +... ... .....+
T Consensus 342 d~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A 421 (613)
T PF04097_consen 342 DPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAA 421 (613)
T ss_dssp -HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHH
Confidence 778888888766543333333333333222211111 111223330000 0111 111 233445
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHH-HHHHHHHhcCC-----------HHHHHHHHHHHHHcC-----CCC
Q 001911 890 DHYIKAGRLEVALELHEEMTSFSSNSAASRNSTL-LLIESLSLARK-----------IDKAFELYVDMIRKD-----GSP 952 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~-----------~~~A~~~~~~~~~~~-----~~p 952 (997)
.-+...|++++|+.+|+.+.+.+. -....+ .|+.+...... ...|..+.+.....+ ..+
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~~~d~----vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAEEYDK----VLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT-HHH----HHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHCCCHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 667788999999999987765320 111222 22333322222 444444444433321 112
Q ss_pred C-HHHHHHHH-----HHHHhcCCHHHHHHHHHHhh
Q 001911 953 E-LSTFVHLI-----KGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 953 ~-~~~~~~l~-----~~y~~~g~~~eA~~~~~~~~ 981 (997)
. ..++..|. .-++..|+|++|++.++++.
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 1 23333333 34678999999999988753
No 311
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.66 E-value=59 Score=38.58 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=31.1
Q ss_pred HHccCCHHHHHHHHHHHHHCCC-CCC-----HhhHHHHHHH--HHhcCCHHHHHHHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGF-IPD-----TSTYSKVIGY--LCDASEAEKAFLLFQ 507 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~-~p~-----~~~~~~li~~--~~~~g~~~~A~~~~~ 507 (997)
.+-.+++..|.+.++.+..... .|+ ...+...+.+ +...|+.+.|...|.
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3567889899999988876421 111 1223333322 234589999999997
No 312
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.60 E-value=48 Score=37.51 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHH
Q 001911 587 NIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMS 666 (997)
Q Consensus 587 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 666 (997)
+..+|...++--...|+.+.+..+|++..-.. ..-...|-..+.-....|+.+-|..++....
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-----------------A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-----------------ALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-----------------hhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 34566777777777788887777777764211 1111233333333334466666665555544
Q ss_pred hcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 667 VVGCE--PNNIVYDALIDGFCKVGKLDEAQMVFSKMLEH 703 (997)
Q Consensus 667 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 703 (997)
+..++ |....+.+.+ .-..|++..|..+++...+.
T Consensus 359 ~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE 395 (577)
T ss_pred hhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh
Confidence 43322 2222222222 12345666666666666554
No 313
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.42 E-value=60 Score=38.39 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=41.9
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH
Q 001911 452 SNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGL-IPDVYTYTILIDNFCK 530 (997)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~ 530 (997)
..+...+.-.|++|.|.+.+-+ ..+...|.+++...+..+.-.+-.+... ..+..... .|...-+..||..|++
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHH
Confidence 3455667778999999998877 2233456666665554443222111111 22221110 1111446777888876
Q ss_pred ---cCCHHHHHHHHHHHHHc
Q 001911 531 ---AGLIEQARNWFDEMVKE 547 (997)
Q Consensus 531 ---~g~~~~A~~~~~~m~~~ 547 (997)
..+..+|.++|--+...
T Consensus 337 ~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS
T ss_pred HHhccCHHHHHHHHHHHHHc
Confidence 35677787777766543
No 314
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.32 E-value=0.23 Score=50.87 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=62.9
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEE 972 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~e 972 (997)
..|.+++|++.+..++.++|. ....|..-+.++.+.+++..|++-+..+++ ++|| ...|-.-+.+....|+|++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred cCcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 456778888888888777654 666666667777777788888888887777 6777 4456666666667788888
Q ss_pred HHHHHHHhhccCC
Q 001911 973 ALQLSYSICHTDI 985 (997)
Q Consensus 973 A~~~~~~~~~~~~ 985 (997)
|...+...+..++
T Consensus 201 aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 201 AAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHhccc
Confidence 8888777776655
No 315
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.17 E-value=1.6 Score=40.76 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSL 931 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 931 (997)
++|+.-|++++..+|+ ...++..++.+|..
T Consensus 52 edAisK~eeAL~I~P~---~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 52 EDAISKFEEALKINPN---KHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHH-TT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc---hHHHHHHHHHHHHH
Confidence 3344444444445554 55555556666544
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.98 E-value=0.75 Score=29.38 Aligned_cols=29 Identities=21% Similarity=0.254 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
+..++.+|.+.|++++|.+.|+++.+..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34466666666667777776666666554
No 317
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.86 E-value=48 Score=36.61 Aligned_cols=182 Identities=12% Similarity=0.120 Sum_probs=131.4
Q ss_pred CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 001911 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSL 715 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 715 (997)
+.|-....+++..+.....+.-...+..+|...| -+-..|..++..|... ..+.-..+|+++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4455677788899998888888999999999876 5667888999999988 667888999999998765 66666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAP--N---VVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYPNVVTYTAMIDGF 789 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~ 789 (997)
...|.+ ++.+.+..+|.++...-++. + ...|..|...- ..+.+..+.+..+++.. |...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 776666 88899999999987653221 1 23566555422 25667777777777653 4444455666666778
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCC 825 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~ 825 (997)
....++++|++++...++.. ..|...-..++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 88999999999999888763 334444444554443
No 318
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.82 E-value=30 Score=34.25 Aligned_cols=211 Identities=14% Similarity=0.093 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGL 754 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 754 (997)
..|..-..+|....++++|...+.+..+- ...+...|. ....++.|.-+.+++.+. +--+..|+--..+|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555555666666777776666555532 111111111 122334444444444432 11233445555556
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---CCC--CCHHHHHHHHHHHHhcCC
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK---GCA--PNFVTYRVLINHCCASGL 829 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~--p~~~~~~~l~~~~~~~g~ 829 (997)
..+|..+-|-..+++.-. ....-++++|+++|++...- +-. --...+....+.+.+..+
T Consensus 102 ~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 666666655555544332 12345666777777765542 100 013345556667777777
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 830 LDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV-PAYRILIDHYIKAGRLEVALELHEEM 908 (997)
Q Consensus 830 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 908 (997)
+++|-..+.+-.... .+. ...|+. ..+...+-.|....++..|...++.-
T Consensus 166 f~Eaa~a~lKe~~~~--------------------------~~~---~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAA--------------------------DKC---DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred hhHHHHHHHHhhhHH--------------------------HHH---hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 777766665432100 000 011222 23444555566667888888888876
Q ss_pred hcCCCCC-CcchhhHHHHHHHHHhcCCHHHHHHH
Q 001911 909 TSFSSNS-AASRNSTLLLIESLSLARKIDKAFEL 941 (997)
Q Consensus 909 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 941 (997)
.+.+.-. ..+..+...|+.+| ..|+.|++..+
T Consensus 217 ~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 217 SQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred hcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 5543211 12444555555443 45666655443
No 319
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.41 E-value=40 Score=35.23 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=14.2
Q ss_pred HHccCCHHHHHHHHHHHH
Q 001911 458 LCGAGKYEKAYNVIREMM 475 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~ 475 (997)
+.+.+++++|.++++-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 447899999999988654
No 320
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.39 E-value=4.8 Score=41.23 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR-----KDGSPELSTF 957 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 957 (997)
.++..++..+...|+.+.+.+.++++....|- +...|..++.+|...|+...|+..|+++.+ .|+.|.+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~---~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY---DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34667888999999999999999999998876 889999999999999999999999999876 5677777666
Q ss_pred HHHHHH
Q 001911 958 VHLIKG 963 (997)
Q Consensus 958 ~~l~~~ 963 (997)
..+..+
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 666665
No 321
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.35 E-value=1.6 Score=42.59 Aligned_cols=86 Identities=9% Similarity=0.055 Sum_probs=48.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 001911 890 DHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVN 968 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g 968 (997)
+.|....+++.|+..|.+++...|. ....|..-+.++.+..+++.+.+--.++++ +.|+ +...+.|+.......
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhc
Confidence 3444455556666666666555543 334444555555555666666555555555 5555 455556666666666
Q ss_pred CHHHHHHHHHHh
Q 001911 969 KWEEALQLSYSI 980 (997)
Q Consensus 969 ~~~eA~~~~~~~ 980 (997)
.+++|+..+.+.
T Consensus 93 ~~~eaI~~Lqra 104 (284)
T KOG4642|consen 93 GYDEAIKVLQRA 104 (284)
T ss_pred cccHHHHHHHHH
Confidence 666666655554
No 322
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.06 E-value=4.5 Score=37.96 Aligned_cols=76 Identities=18% Similarity=0.081 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCC-----------HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGR-----------LEVALELHEEMTSFSSNSAASRNSTLLLIESLS 930 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 930 (997)
+.+|+..+++... +.|+ ..++..++++|...+. +++|.+.|+++...+| +...|+.-+..
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P----~ne~Y~ksLe~-- 122 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP----NNELYRKSLEM-- 122 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T----T-HHHHHHHHH--
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHH--
Confidence 5566666666653 3466 4688889999888763 4445555555555554 33444432222
Q ss_pred hcCCHHHHHHHHHHHHHcCC
Q 001911 931 LARKIDKAFELYVDMIRKDG 950 (997)
Q Consensus 931 ~~g~~~~A~~~~~~~~~~~~ 950 (997)
.++|-++..++.+.+.
T Consensus 123 ----~~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 123 ----AAKAPELHMEIHKQGL 138 (186)
T ss_dssp ----HHTHHHHHHHHHHSSS
T ss_pred ----HHhhHHHHHHHHHHHh
Confidence 1345566666655443
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.60 E-value=0.97 Score=29.18 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=10.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 923 LLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 923 ~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..++..+...|++++|.+.|+++++
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3334444444444444444444433
No 324
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.53 E-value=1.9 Score=34.03 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=37.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 929 LSLARKIDKAFELYVDMIRKDGSPE--LSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
+....+.++|+..+++++++-..|. ..++-+|+.+|+..|++++.+++.-.-
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888543332 346667888888888888888776543
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.41 E-value=12 Score=36.17 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 001911 897 RLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD---GSPELSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 897 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~y~~~g~~~eA 973 (997)
.-++|.+.|-.+...+. .+...+-..+..|....+.++|+.++-++++.. -.+|+.++..|+.+|.+.|+++.|
T Consensus 121 ~d~~A~~~fL~~E~~~~---l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPE---LETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCC---CCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 33566666666665431 233333333445555777788888887777632 144577888888888888888877
Q ss_pred HH
Q 001911 974 LQ 975 (997)
Q Consensus 974 ~~ 975 (997)
.-
T Consensus 198 Yi 199 (203)
T PF11207_consen 198 YI 199 (203)
T ss_pred hh
Confidence 64
No 326
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.39 E-value=3.4 Score=42.04 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=76.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCch--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHh
Q 001911 160 GYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKE--VLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAI 237 (997)
Q Consensus 160 ~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~ 237 (997)
|..+++.+...++..-...++.+.+...+-.++....- .....-.+.++.+.+ -++++++.++..=...|+.||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 56677777777776666667777777777766653110 000112334444433 678899999999899999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 001911 238 YNALIQVFLRADRLDTAYLVYREMLDAG 265 (997)
Q Consensus 238 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g 265 (997)
++.||+.+.+.+++..|..+.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877654
No 327
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=8.4 Score=37.85 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhc--------CCCCCC-------cchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTS--------FSSNSA-------ASRNSTLLLIESLSLARKIDKAFELYVDMI 946 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 946 (997)
++++..-++-+.+.|++.+|...|+.+.. ..|+.+ .....+.++.+++...|++-++++.-.+++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566677888899999999888887653 123321 223455567777788899999999999999
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 947 RKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 947 ~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
. ..|+ ..+|...+++....-+.++|..-+.+++..+..
T Consensus 258 ~--~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 R--HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred h--cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 8 5674 889999999999999999999988888776543
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.99 E-value=27 Score=31.83 Aligned_cols=71 Identities=17% Similarity=0.110 Sum_probs=46.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhH-HHHHHHHHhcCCHHHHHHH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAY-RILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~ 904 (997)
..++.+++..+++.|.-. .|..+-. ..-+..+...|+|++|+++
T Consensus 22 ~~~d~~D~e~lLdALrvL-----------------------------------rP~~~e~d~~dg~l~i~rg~w~eA~rv 66 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL-----------------------------------RPNLKELDMFDGWLLIARGNYDEAARI 66 (153)
T ss_pred hcCCHHHHHHHHHHHHHh-----------------------------------CCCccccchhHHHHHHHcCCHHHHHHH
Confidence 477888888888887653 3544322 2345678889999999999
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
+++..+..+. .+..-..++.++.-.|+
T Consensus 67 lr~l~~~~~~---~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 67 LRELLSSAGA---PPYGKALLALCLNAKGD 93 (153)
T ss_pred HHhhhccCCC---chHHHHHHHHHHHhcCC
Confidence 9999876543 23344445555555565
No 329
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.59 E-value=31 Score=32.06 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=71.3
Q ss_pred HHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhH-HHHHH
Q 001911 815 VTYRVLINH---CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAY-RILID 890 (997)
Q Consensus 815 ~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~ 890 (997)
.+...|+.. -...++.+++..+++.+... .|..+.. ..-+.
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL-----------------------------------RP~~~e~~~~~~~ 52 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL-----------------------------------RPEFPELDLFDGW 52 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh-----------------------------------CCCchHHHHHHHH
Confidence 344444443 34677889999999887653 4554433 34557
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~ 970 (997)
.+...|+|.+|+++++.+....|+ .+..-..++.++...|+.+ =..+.+++.+.+-.|+. ..|.+.+......
T Consensus 53 l~i~r~~w~dA~rlLr~l~~~~~~---~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~ 125 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEERAPG---FPYAKALLALCLYALGDPS-WRRYADEVLESGADPDA---RALVRALLARADL 125 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhccCCC---ChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCCChHH---HHHHHHHHHhccc
Confidence 788999999999999999887654 5555556666666667632 11223445664433332 3444444444444
Q ss_pred HHHH
Q 001911 971 EEAL 974 (997)
Q Consensus 971 ~eA~ 974 (997)
..|.
T Consensus 126 ~~a~ 129 (160)
T PF09613_consen 126 EPAH 129 (160)
T ss_pred cchh
Confidence 4443
No 330
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.54 E-value=35 Score=32.70 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=61.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 899 (997)
+...+...|++++|...++...... .+ ..+. ..+-..|+......|..|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t--~D-e~lk----------------------------~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQT--KD-ENLK----------------------------ALAALRLARVQLQQKKAD 143 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccc--hh-HHHH----------------------------HHHHHHHHHHHHHhhhHH
Confidence 4456777888888888887665321 00 0000 001123667778888888
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
+|+..++...... -.......-+.++...|+-++|...|++.++.+
T Consensus 144 ~AL~~L~t~~~~~----w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 144 AALKTLDTIKEES----WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhcccccc----HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 8888888776532 133344556777888888888888888888864
No 331
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=85.46 E-value=0.1 Score=56.31 Aligned_cols=62 Identities=10% Similarity=-0.038 Sum_probs=48.6
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCC--CCCCCCCCCCCCCCcccchhhhccccCCCCCCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDP--DDPFSTGCSPVESVSSEDFAFLRDSLMNPSAADSVP 90 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (997)
-||.||.+.|++|+.+-. ++++|..+|+.....++ ...|+. .|+.+.+.+|++++....-.|
T Consensus 262 lfH~GHi~~L~~Ak~lGd--~LIVGV~sD~~v~~~KG~~~Pi~~~---------~ER~~~v~ack~VD~VVi~ap 325 (418)
T PLN02406 262 LFHAGHVEILRLARALGD--FLLVGIHTDQTVSAHRGAHRPIMNL---------HERSLSVLACRYVDEVIIGAP 325 (418)
T ss_pred cCCHHHHHHHHHHHHhCC--EEEEEEeccHHHHHhcCCCCCCCCH---------HHHHHHHhccCcccEEEeCCC
Confidence 489999999999999864 69999999986555552 345666 899999999998876544333
No 332
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.33 E-value=65 Score=35.64 Aligned_cols=243 Identities=12% Similarity=0.138 Sum_probs=117.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcC-CCC-CHHhHHHHHHHHHhcCCH-HHHHH
Q 001911 660 DLLDAMSVVGCEPNNIVYDALIDGFCKVG------KLDEAQMVFSKMLEHG-CNP-NVYTYGSLIDRLFKDKRL-DLALK 730 (997)
Q Consensus 660 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g------~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~-~~A~~ 730 (997)
.+|++.... -|+...|+..|..|...- .......+|+...+.+ ..+ ...-|..+.-.++..... +.|..
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 455554432 345555666666554321 3444555566555543 222 223444444444443332 22333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHH-HHH-HHHH
Q 001911 731 VISKMLEDSYAPNVVIYTEMIDGLIKVG-KTEE-AYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK-VDKC-LEL-LRQM 805 (997)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A-~~l-~~~m 805 (997)
+..+ ++..+...|-.-+....+.. +++- -.++|......-..+-...|+... .|+ .+.. +.+ +...
T Consensus 381 l~~e----~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 381 LTTE----LFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred hhHH----HhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 3322 23345555555544444221 1111 122223333222223333344333 222 2221 112 2222
Q ss_pred HhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhh
Q 001911 806 SSKGCAPNFVTY-RVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPA 884 (997)
Q Consensus 806 ~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 884 (997)
+.. ..|+..|+ +.+++-+...|-.++|.+.+....... | |+.+.
T Consensus 452 ~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p---------------------------------~sl~l 496 (568)
T KOG2396|consen 452 LSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-P---------------------------------FSLDL 496 (568)
T ss_pred HHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-C---------------------------------ccHHH
Confidence 222 34554443 356667777788888888887776532 2 23333
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 885 YRILIDHYI--KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 885 ~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
+..++..-. ..=+...+.+.|+.|....+ .++..|.....--...|..+.+-.+|.++.+. +.|
T Consensus 497 ~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg---~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt-l~~ 562 (568)
T KOG2396|consen 497 FRKMIQFEKEQESCNLANIREYYDRALREFG---ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT-LQG 562 (568)
T ss_pred HHHHHHHHhhHhhcCchHHHHHHHHHHHHhC---CChHHHHHHHHhhccCCCcccccHHHHHHHHh-hCh
Confidence 333332211 11126667777887776543 37778887776666778888888888877763 444
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.28 E-value=1.1 Score=28.55 Aligned_cols=27 Identities=11% Similarity=0.317 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
++..++.+|.+.|++++|.+.++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567888888888899999988887765
No 334
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.14 E-value=34 Score=32.20 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 001911 642 YGALIDGLCKVHKVREAHDLLDAM 665 (997)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~~~~~m 665 (997)
+..+++.+...|++-+|.++.+..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 344455555566666666655554
No 335
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=84.94 E-value=49 Score=33.90 Aligned_cols=160 Identities=17% Similarity=0.119 Sum_probs=72.0
Q ss_pred HhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCC----CCh-----------HHHHHHHHhccCchhhHHHHH
Q 001911 140 NLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHD----DRV-----------PEQFLREIGNEDKEVLGKLLN 204 (997)
Q Consensus 140 ~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~-----------a~~~~~~~~~~~~~~~~~~~~ 204 (997)
.+.+|.+..-++.+..+....|+--..++.-++-+.++.+. -+. |..-.+.| .+....++
T Consensus 41 ~~~gdle~vak~ldssg~~l~~~rYgd~~fdil~~gg~~~pg~~~sddge~~t~~cvfda~e~~E~i-----~~~~qvf~ 115 (412)
T KOG2297|consen 41 DNAGDLELVAKSLDSSGNDLDYRRYGDILFDILFAGGRLQPGGVKSDDGERHTSYCVFDAEEKREAI-----RNSVQVFQ 115 (412)
T ss_pred hcCccHHHHHHHHHhccccccHHHHHHHHHHHHHHhcccCCCCccccccCccCceeEeecCchHHHH-----HHHHHHHH
Confidence 34566666666666665555554434444444444433210 001 11111111 12335678
Q ss_pred HHHHHHH--HcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHH-HHH
Q 001911 205 VLIHKCC--RNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAY-SLC 281 (997)
Q Consensus 205 ~li~~y~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~ 281 (997)
.+|+-|- ..+.-++..+++.-+. |+.++...-.+++.++.- ..|. ++..+++.+.+ -+.
T Consensus 116 KliRRykyLeK~fE~e~~k~Llflk--~F~e~Er~KLA~~Tal~l---------------~nGt-~~~tvl~~L~~d~LV 177 (412)
T KOG2297|consen 116 KLIRRYKYLEKNFENEMRKFLLFLK--LFEENERKKLAMLTALLL---------------SNGT-LPATVLQSLLNDNLV 177 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHH---------------hCCC-CCHHHHHHHHHhhHH
Confidence 8887543 3333334444443333 466666665555554432 2243 33333443333 344
Q ss_pred hcCC-HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 001911 282 KAGR-WKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLL 325 (997)
Q Consensus 282 ~~g~-~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 325 (997)
+.|- ..=|.++|+..- .....|.+|+.+-+.+.-+.-+++|
T Consensus 178 keGi~l~F~~~lFk~~~---~Ek~i~~lis~Lrkg~md~rLmeff 219 (412)
T KOG2297|consen 178 KEGIALSFAVKLFKEWL---VEKDINDLISSLRKGKMDDRLMEFF 219 (412)
T ss_pred HHhHHHHHHHHHHHHHH---hhccHHHHHHHHHhcChHhHHHHhc
Confidence 4442 233555665521 2233456666665554444444443
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.88 E-value=6 Score=40.71 Aligned_cols=110 Identities=16% Similarity=0.043 Sum_probs=76.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHHHHHHhcCCHH
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 899 (997)
.+-|.++|.++||+..+...... .| +...+..-+.+|.+.+++.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~-----------------------------------~P~NpV~~~NRA~AYlk~K~FA 148 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV-----------------------------------YPHNPVYHINRALAYLKQKSFA 148 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc-----------------------------------CCCCccchhhHHHHHHHHHHHH
Confidence 34678999999999988775543 25 4455666778888888888
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA 973 (997)
.|+.=.+.+...+.. -..+|..-+.+-...|+.++|.+-++.+++ +.|+. ..|-..|.+..-..|+
T Consensus 149 ~AE~DC~~AiaLd~~---Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~--LEP~~---~ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 149 QAEEDCEAAIALDKL---YVKAYSRRMQARESLGNNMEAKKDCETVLA--LEPKN---IELKKSLARINSLRER 214 (536)
T ss_pred HHHHhHHHHHHhhHH---HHHHHHHHHHHHHHHhhHHHHHHhHHHHHh--hCccc---HHHHHHHHHhcchHhh
Confidence 888888887765421 334555555555667899999999999999 78872 3344444444444444
No 337
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=84.59 E-value=0.14 Score=55.31 Aligned_cols=59 Identities=8% Similarity=0.028 Sum_probs=47.4
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSAAD 87 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (997)
-||+||.+.|+||+.|.. ++++|..+|+..-..++.+.+|. .|+++.+++|++.+...+
T Consensus 64 llH~GH~~~L~qAk~lGd--~LIVGV~SDe~i~~~Kg~PV~~~---------eER~~~v~alk~VD~Vv~ 122 (418)
T PLN02406 64 MMHYGHANALRQARALGD--ELVVGVVSDEEIIANKGPPVTPM---------HERMIMVSGVKWVDEVIP 122 (418)
T ss_pred CCCHHHHHHHHHHHHhCC--EEEEEEecChhhhccCCCCcCCH---------HHHHHHHHhcCCCceEEe
Confidence 579999999999999986 59999999985544444456676 999999999998765433
No 338
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.40 E-value=1.3 Score=30.18 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
++..|+..|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455566666666666666666655544
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.23 E-value=2 Score=27.68 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
.+|..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 468999999999999999999999887643
No 340
>PRK09687 putative lyase; Provisional
Probab=82.70 E-value=66 Score=33.61 Aligned_cols=94 Identities=11% Similarity=0.043 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHccCCh----HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh-----hHHHHHHHHHHHCCCCCC
Q 001911 301 DTVLYTKMISGLCEASLF----EEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQL-----GRCKRVLSMMITEGCYPS 371 (997)
Q Consensus 301 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~-----~~a~~~~~~m~~~g~~~~ 371 (997)
|...-...+.++++.|+. .+++..+..+... .|+...-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444445555555542 3455555555333 24444444444444333211 112222222222 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001911 372 PRIFHSLIHAYCRSGDYSYAYKLLSKMRK 400 (997)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (997)
..+-...+.++.+.|+ .+|...+-.+.+
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~ 169 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK 169 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc
Confidence 4455555566655555 344444444443
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.20 E-value=1.8 Score=30.00 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 958 VHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 958 ~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.+|+++|.+.|+.+.|.++++.+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3566666666666666666666664
No 342
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.04 E-value=0.043 Score=50.91 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHccC
Q 001911 300 PDTVLYTKMISGLCEAS 316 (997)
Q Consensus 300 p~~~~~~~li~~~~~~g 316 (997)
++...|..+++.+...+
T Consensus 123 ~~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 123 DDPELWEQLLKYCLDSK 139 (143)
T ss_dssp SSSHHHHHHHHHHCTST
T ss_pred CcHHHHHHHHHHHHhcC
Confidence 34555666655554443
No 343
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.75 E-value=32 Score=35.57 Aligned_cols=98 Identities=18% Similarity=0.076 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCcchhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----H
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSS--NSAASRNS-TLLLIESLSLARKIDKAFELYVDMIRKDGSPE----L 954 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~ 954 (997)
..++...+..|++-|+.+.|.+.+.+-....- +...|... ...++..|....-+.+-++..+.+++.|..=| .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34667788899999999999999887655321 11222222 22344444555557777777778888774333 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
.+|..+...- .-++.+|-.++-...
T Consensus 184 KvY~Gly~ms--vR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 184 KVYQGLYCMS--VRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHH--HHhHHHHHHHHHHHc
Confidence 4555554443 346788877765443
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.26 E-value=1.3e+02 Score=36.06 Aligned_cols=233 Identities=15% Similarity=0.051 Sum_probs=128.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCc---eeHHHHHH-HHHhcCChHHHHHHHHHHHhc--
Q 001911 595 IDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNV---YTYGALID-GLCKVHKVREAHDLLDAMSVV-- 668 (997)
Q Consensus 595 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~-~~~~~g~~~~A~~~~~~m~~~-- 668 (997)
+.......++++|..+..++...-..+ +..+.. ..++++-. .....|++++|.++-+.....
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~------------~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~ 489 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAP------------MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLP 489 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcC------------cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 445567788999998888876532100 011111 12344333 223468889999888877653
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH---HHH--HHHHhcCC--HHHHHHHHHHHHhC-
Q 001911 669 --GCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYG---SLI--DRLFKDKR--LDLALKVISKMLED- 738 (997)
Q Consensus 669 --~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~li--~~~~~~g~--~~~A~~~~~~~~~~- 738 (997)
-..+..+.+..+..+..-.|++++|..+.....+..-.-++..+. .+. ..+...|. ..+....|......
T Consensus 490 ~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~ 569 (894)
T COG2909 490 EAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQH 569 (894)
T ss_pred cccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 223456677788888888999999999887776642222333332 222 23445663 22333333333222
Q ss_pred --CCC---CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHhCC-
Q 001911 739 --SYA---PNVVIYTEMIDGLIK-VGKTEEAYKVMLMMEEKGCYPNVVTYT--AMIDGFGKVGKVDKCLELLRQMSSKG- 809 (997)
Q Consensus 739 --~~~---~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g- 809 (997)
..+ +-..+...+..++.+ .+...+|..-+.-.......|-...+. .|+......|+.++|.....++....
T Consensus 570 l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 570 LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 001 122344445555544 122233333333333333333222222 67778889999999999998887632
Q ss_pred ---CCCCHHHHHHHHH--HHHhcCCHHHHHHHHHH
Q 001911 810 ---CAPNFVTYRVLIN--HCCASGLLDEAHNLLEE 839 (997)
Q Consensus 810 ---~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~ 839 (997)
..++..+-...+. .....|+.++|...+.+
T Consensus 650 ~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 650 NGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2233333333333 33467888888888776
No 345
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.13 E-value=1.2e+02 Score=35.63 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=15.0
Q ss_pred hhhhhhcccccccccCCc
Q 001911 8 TLSSLIFSSKSFIFSHPN 25 (997)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (997)
+.|.-+++.+.|.||--|
T Consensus 41 ~is~~av~~~~~~~GtH~ 58 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHR 58 (846)
T ss_pred HHHHHHhhcceeeecccc
Confidence 567788999999999766
No 346
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.99 E-value=19 Score=40.30 Aligned_cols=175 Identities=18% Similarity=0.183 Sum_probs=104.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 001911 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLEL 801 (997)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 801 (997)
.|+++.|..++..+- -..-+.++..+.++|..++|+++- +|+.--- ....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~rF---elal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQRF---ELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhhh---hhhhhcCcHHHHHHH
Confidence 455555554443321 234556677777778777776532 2332222 223577888888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC
Q 001911 802 LRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI 881 (997)
Q Consensus 802 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 881 (997)
..+.. +..-|..|.++....|++..|.+.|.+...
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d--------------------------------------- 694 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD--------------------------------------- 694 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------------------------------------
Confidence 66543 456688899999999999998888876543
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLI 961 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 961 (997)
|..|+-++...|+-+--..+-+...+... + +.--.+|...|+++++.+++.+ .+-.|+. ..++
T Consensus 695 ---~~~LlLl~t~~g~~~~l~~la~~~~~~g~----~----N~AF~~~~l~g~~~~C~~lLi~---t~r~peA---al~A 757 (794)
T KOG0276|consen 695 ---LGSLLLLYTSSGNAEGLAVLASLAKKQGK----N----NLAFLAYFLSGDYEECLELLIS---TQRLPEA---ALFA 757 (794)
T ss_pred ---hhhhhhhhhhcCChhHHHHHHHHHHhhcc----c----chHHHHHHHcCCHHHHHHHHHh---cCcCcHH---HHHH
Confidence 44566677777776655555555544321 1 2222345678999988877554 3345653 2445
Q ss_pred HHHHhcCCHHHHHHHHH
Q 001911 962 KGLIRVNKWEEALQLSY 978 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~ 978 (997)
+.|.- .+..+-..+++
T Consensus 758 rtYlp-s~vs~iv~~wk 773 (794)
T KOG0276|consen 758 RTYLP-SQVSRIVELWK 773 (794)
T ss_pred hhhCh-HHHHHHHHHHH
Confidence 55544 33444444443
No 347
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.37 E-value=26 Score=32.46 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=56.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIR 966 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~ 966 (997)
++..-.+.++.+++..++.-+....|+ ....-..-++.+...|+|.+|+.+++.+.+. .|. +.+--.++.++..
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~---~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPE---FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHH
Confidence 334445778999999999999988876 5566666788889999999999999998774 353 4333444445544
Q ss_pred cCC
Q 001911 967 VNK 969 (997)
Q Consensus 967 ~g~ 969 (997)
.|+
T Consensus 91 ~~D 93 (160)
T PF09613_consen 91 LGD 93 (160)
T ss_pred cCC
Confidence 443
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.03 E-value=2.5 Score=25.35 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSY 978 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~ 978 (997)
+...|+.+|...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777777888887777665
No 349
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.97 E-value=0.26 Score=45.62 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=38.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCH
Q 001911 207 IHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRW 286 (997)
Q Consensus 207 i~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 286 (997)
|..+.+.+.+..+..+++.+...+...+....+.++..+++.+..+....+++ ..+.+-...++..+.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcchH
Confidence 34444455555555555555544444445555666666666555455544444 11112223444444445555
Q ss_pred HHHHHHHHh
Q 001911 287 KEALELIEK 295 (997)
Q Consensus 287 ~~A~~~~~~ 295 (997)
++|.-++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555444443
No 350
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=79.82 E-value=0.21 Score=46.35 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=45.3
Q ss_pred cccccccCCcccccccchhhhhhhccCCCCCCCCccCCC--CCCCCCCCCCCCCCcccchhhhccccCCCCCCC
Q 001911 16 SKSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDP--DDPFSTGCSPVESVSSEDFAFLRDSLMNPSAAD 87 (997)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (997)
-..||.||.+.|++|+.+.. ++++|-.+|+.....++ .+.||. .++.+.+..|...+...+
T Consensus 11 FD~~H~GHi~~L~~A~~lgd--~liVgV~~D~~~~~~K~~~~pi~~~---------~eR~~~v~~~~~Vd~V~v 73 (152)
T cd02173 11 FDLFHIGHIEFLEKARELGD--YLIVGVHDDQTVNEYKGSNYPIMNL---------HERVLSVLACRYVDEVVI 73 (152)
T ss_pred ccCCCHHHHHHHHHHHHcCC--EEEEEEeCcHHHHhhcCCCCCCCCH---------HHHHHHHHhcCCCCEEEE
Confidence 35689999999999999954 58888888874333332 245566 899999999998765433
No 351
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.66 E-value=13 Score=38.12 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001911 534 IEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETML 580 (997)
Q Consensus 534 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 580 (997)
.++++.++..=++-|+-||..+++.+|+.+.+.+++.+|.++...|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444333
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.80 E-value=23 Score=29.58 Aligned_cols=85 Identities=22% Similarity=0.149 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 001911 251 LDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRA 330 (997)
Q Consensus 251 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 330 (997)
.++|..+-+-+...+ .....+--+-+..+...|++++|..+.+... .||...|-+|-.+ +.|-.+++..-+.+|..
T Consensus 21 HqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 21 HQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC-YPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCC-CchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 345555544444332 1122333334445666677777777666653 6677776666543 44555555556666665
Q ss_pred CCCCCcHHhH
Q 001911 331 RSCIPNVVTF 340 (997)
Q Consensus 331 ~~~~p~~~t~ 340 (997)
.| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 55 3433333
No 353
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.65 E-value=1.1e+02 Score=33.73 Aligned_cols=113 Identities=14% Similarity=0.060 Sum_probs=71.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCC---ceeHHHHHHHHHhcCChHHHHHHHHHHHh-----
Q 001911 596 DGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPN---VYTYGALIDGLCKVHKVREAHDLLDAMSV----- 667 (997)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 667 (997)
..+.-.|++.+|.+++...--.... ...+.|. -..||.|.-.+.+.|.+..+..+|....+
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~-----------g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEA-----------GGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred HHHHHhcchHHHHHHHHhccccccc-----------CccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 4456678888888877654211100 0001221 23356666667788889988888887763
Q ss_pred --cCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 001911 668 --VGCEPN-----------NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK 721 (997)
Q Consensus 668 --~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 721 (997)
.|+.|. ..+||. .-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 354442 133443 33577889999999999888775 33477888888888763
No 354
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.63 E-value=20 Score=36.42 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 922 TLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 922 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
.......|...|.+.+|.++.++++. +.| +...+..|...|...|+--+|.+.++++..+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 33456677889999999999999998 677 5778889999999999988998888877543
No 355
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.57 E-value=23 Score=29.57 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=37.7
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 001911 309 ISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEG 367 (997)
Q Consensus 309 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 367 (997)
++.+...|+|++|..+.+.+ +.||...+..+-. .+.|-.+....-+.+|...|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 45677888899988887765 5788887766543 36676676777777776666
No 356
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=78.04 E-value=2.9 Score=45.40 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=59.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRV 967 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~ 967 (997)
++-....+.++.|+.+|.++++..|+ ....+..-+.++.+.+++..|+.-..++++ ..|. ..+|+.-+.+..+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPN---CAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCc---ceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhH
Confidence 34455666777777777777777664 444444555666777777777777777777 4565 56677777777777
Q ss_pred CCHHHHHHHHHHhh
Q 001911 968 NKWEEALQLSYSIC 981 (997)
Q Consensus 968 g~~~eA~~~~~~~~ 981 (997)
+++.+|...+++..
T Consensus 86 ~~~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 86 GEFKKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777766543
No 357
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.39 E-value=4.6 Score=27.33 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 921 STLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 921 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+++.|+..|...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 566677777777777777777777665
No 358
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.19 E-value=12 Score=33.91 Aligned_cols=73 Identities=10% Similarity=0.000 Sum_probs=57.5
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 001911 892 YIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 892 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~ 969 (997)
-...++.+++..++.-+.-..|+ ....-..-++.+...|+|.+|+.++..+.+.+ |. +..--.++.++.-.|+
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~---~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~--~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPN---LKELDMFDGWLLIARGNYDEAARILRELLSSA--GAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCC---ccccchhHHHHHHHcCCHHHHHHHHHhhhccC--CCchHHHHHHHHHHHhcCC
Confidence 34589999999999999998876 56666677888889999999999999988854 33 4445567777777776
No 359
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=76.19 E-value=0.36 Score=51.64 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=45.8
Q ss_pred ccccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCCCC
Q 001911 17 KSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSAAD 87 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (997)
.-+|+||.+.|++|+.+... +++|..+|+.....++-..+|. .++++-+++|.+.+....
T Consensus 21 D~vH~GH~~~L~qAk~~g~~--Livgv~~d~~i~~~K~~pi~~~---------eeR~~~l~~~~~VD~Vv~ 80 (353)
T PTZ00308 21 DMLHFGHANALRQARALGDE--LFVGCHSDEEIMRNKGPPVMHQ---------EERYEALRACKWVDEVVE 80 (353)
T ss_pred ccCCHHHHHHHHHHHHhCCE--EEEEeCCHHHHhhcCCCCCCCH---------HHHHHHHHhcCCccEEEE
Confidence 35799999999999999664 9999999985433333234444 999999999998776543
No 360
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=75.41 E-value=71 Score=31.53 Aligned_cols=138 Identities=17% Similarity=0.276 Sum_probs=74.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001911 524 LIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGD 603 (997)
Q Consensus 524 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 603 (997)
.+..|.+.-++.-|-...+.+.+ | ..+- ..+.-|.+..+.+--.++.+-....++.-+......++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE----P-IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE----P-IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh----h-HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 44455555555555555555443 1 1111 22334445554444445555555556666665555555 456899
Q ss_pred HHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 001911 604 IERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNN 674 (997)
Q Consensus 604 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 674 (997)
..+|+..++.-.......+.+..+++.+ .|.+.....++.. |..+++++|.+.+.++-+.|+.|..
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d----~PhP~~v~~ml~~-~~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCD----EPHPLLVKKMLQA-CLKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccC----CCChHHHHHHHHH-HHhccHHHHHHHHHHHHHcCCCHHH
Confidence 9999888887665544433343333322 4554444444443 3345677777777777776665543
No 361
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.17 E-value=1e+02 Score=33.94 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=56.6
Q ss_pred HHhcCCHHHHHHHHHHHH---hCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCC-----
Q 001911 719 LFKDKRLDLALKVISKML---EDSYAPN-----VVIYTEMIDGLIKVGKTEEAYKVMLMMEE-------KGCYPN----- 778 (997)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~---~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~----- 778 (997)
+.-.|++.+|.+++...- +.|...+ ...||.|.....+.|.+..+..+|.+..+ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 344566666666654431 1121111 12335555555555666666666655543 244432
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001911 779 ------VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCA 826 (997)
Q Consensus 779 ------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~ 826 (997)
..+||. .-.|...|++-.|.+-|.+.... +.-++..|..|..+|..
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 234443 23456677777777777776653 34566777777777763
No 362
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.12 E-value=5.1 Score=29.19 Aligned_cols=32 Identities=13% Similarity=0.029 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001911 922 TLLLIESLSLARKIDKAFELYVDMIRKDGSPELS 955 (997)
Q Consensus 922 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 955 (997)
...++-++.+.|++++|.+..+.+++ ..|+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 44566777888888888888888888 678643
No 363
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=74.91 E-value=76 Score=29.91 Aligned_cols=135 Identities=13% Similarity=0.143 Sum_probs=75.3
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 001911 468 YNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKE 547 (997)
Q Consensus 468 ~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 547 (997)
.+.++.+.+.+++|+...+..++..+.+.|++..- ..+...++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 34566666777888888888888888888875543 34445555555444333332222 2223333333334332
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 548 GCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 548 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
=...+..++..+...|++-+|.++.+..... +......++.+..+.+|...-..+|+-...
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113455677788888888888887765322 112224456666666666555555554433
No 364
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.85 E-value=19 Score=34.88 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIE 927 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 927 (997)
..++++..+.-... .|... .-..+.+.|+-.|+|++|..-++.+....|+-.+....|..++.
T Consensus 17 L~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 17 LQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 44555555554432 34433 45567788888899999888888887777654555566666554
No 365
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.32 E-value=60 Score=32.24 Aligned_cols=65 Identities=9% Similarity=-0.003 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.+.+...++...|++-++++-.+..+...|+ |..+|..-+.+....=+.++|.+-+.++++ +.|.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~---nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldps 296 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPG---NVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPS 296 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChh
Confidence 3444556777889999999999999998876 888888888887777789999999999999 6675
No 366
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.98 E-value=36 Score=33.69 Aligned_cols=94 Identities=14% Similarity=-0.027 Sum_probs=65.3
Q ss_pred CCChhh-HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC
Q 001911 879 VPIVPA-YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD----GSPE 953 (997)
Q Consensus 879 ~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~ 953 (997)
.|..++ |..-+-+|.+..+|+.+.+--.++++..|+ .......++........+++|+..+.++...+ +.|.
T Consensus 40 nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N---~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~ 116 (284)
T KOG4642|consen 40 NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFG 116 (284)
T ss_pred CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCc
Confidence 466654 445666777888999999999999888775 66777788888888899999999988884422 2333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH
Q 001911 954 LSTFVHLIKGLIRVNKWEEALQ 975 (997)
Q Consensus 954 ~~~~~~l~~~y~~~g~~~eA~~ 975 (997)
..++..|..+-..--...++..
T Consensus 117 ~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 117 DDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred chHHHHHHHHHhCccchhHHHH
Confidence 4566666666444333344444
No 367
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.94 E-value=2.1e+02 Score=34.49 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=45.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHhccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNV-------VTYTAMID-GFGKVGKVDKCLELLRQMSSK----GCAPNFVTYRVLIN 822 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~-~~~~~g~~~~A~~l~~~m~~~----g~~p~~~~~~~l~~ 822 (997)
....++.+|..++.++...-..|+. ..++.|-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3456677777766666543111111 12333221 123456677777776666553 11123445555666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 001911 823 HCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~ 841 (997)
+..-.|++++|..+..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 506 AAHIRGELTQALALMQQAE 524 (894)
T ss_pred HHHHhchHHHHHHHHHHHH
Confidence 6666677777776665544
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.35 E-value=2e+02 Score=34.17 Aligned_cols=50 Identities=10% Similarity=0.154 Sum_probs=30.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001911 926 IESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSY 978 (997)
Q Consensus 926 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~ 978 (997)
+..+...|+..+|...+..+.+. .+......++....+.|.++-++....
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 33445567777777777776663 333445566666666777666665553
No 369
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.50 E-value=3.6e+02 Score=36.62 Aligned_cols=319 Identities=12% Similarity=0.080 Sum_probs=159.3
Q ss_pred HHHHHHhcCChHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 001911 645 LIDGLCKVHKVREAHDLLDAM----SVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLF 720 (997)
Q Consensus 645 li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 720 (997)
+..+-.+++.+..|.-.++.- ... .....-|-.+...|...++++....+...-.. .|+ ...-|....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHH
Confidence 333445666777777777662 111 11223344444477777777777766654111 111 222344456
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHH
Q 001911 721 KDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAM-IDGFGKVGKVDKCL 799 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~ 799 (997)
..|++..|...|+.+...+ ++...+++.++......|.++.+....+-.... ..+....++++ +.+-.+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 6778888888888877654 333566666666666667777666655544432 22333344433 23335666666555
Q ss_pred HHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHH--HHHHHHHHhcCCC---------CchhhHHHHHHhHhH-hHHH
Q 001911 800 ELLRQMSSKGCAPNFVTYRV--LINHCCASGLLDEA--HNLLEEMKQTYWP---------THVAGYRKVIEGFSR-EFIV 865 (997)
Q Consensus 800 ~l~~~m~~~g~~p~~~~~~~--l~~~~~~~g~~~~A--~~~~~~m~~~~~~---------~~~~~~~~~~~~~~~-~~~~ 865 (997)
.... .. +..+|.. ++..+.+..+-+.- ..+++.+.+.... +...+|..+.+.... +...
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4433 11 1122222 22222222211111 1122222221110 222333333322211 1111
Q ss_pred HHHHHHHhccCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHH-HhcC--CCCC-CcchhhHHHHHHHHHhcCCHHHHHH
Q 001911 866 SLGLVNEMGKTD-SVPIVPAYRILIDHYIKAGRLEVALELHEE-MTSF--SSNS-AASRNSTLLLIESLSLARKIDKAFE 940 (997)
Q Consensus 866 a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~--~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 940 (997)
..+.+....... ...+...|..-+..=....+..+-+-.+++ +... .|+. ..-..+|...++..++.|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 222222222211 111122333222211111222222222222 2221 2111 2346789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 941 LYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 941 ~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
.+-++.+.. -++++.-.++.+...|+...|+.++++..+.
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 888877743 3567889999999999999999999988754
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.34 E-value=8.4 Score=30.54 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=42.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVD 944 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 944 (997)
.+..| .+.+.++|+..++++.+..+..+..-.++..+..+++..|++++++++.-.
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 788999999999999987665444455666777888899999988876544
No 371
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.96 E-value=99 Score=33.34 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCCH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD---------GSPEL 954 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~p~~ 954 (997)
.+..+++.|...|+++.|++.|.++..-+.....-...|..++..-.-.|+|.....+..++...- +.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 567899999999999999999999877654323344555566666566788877777777766520 11223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYS 979 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~ 979 (997)
..+-.|+.. ..+++..|.+.+=.
T Consensus 232 ~C~agLa~L--~lkkyk~aa~~fL~ 254 (466)
T KOG0686|consen 232 KCAAGLANL--LLKKYKSAAKYFLL 254 (466)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHh
Confidence 344444444 45588888877644
No 372
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.91 E-value=2.1e+02 Score=33.60 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPEL--STFVHLIKG 963 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~ 963 (997)
..++-+|+-.|+...-.+++.-+..- ++ +|..-...++-++.-..+++......+-+.+. .+|.+ .+-..|+-+
T Consensus 541 ~t~alAy~GTgnnkair~lLh~aVsD-~n--DDVrRaAVialGFVl~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIa 616 (929)
T KOG2062|consen 541 YTLALAYVGTGNNKAIRRLLHVAVSD-VN--DDVRRAAVIALGFVLFRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIA 616 (929)
T ss_pred HHHHHHHhccCchhhHHHhhcccccc-cc--hHHHHHHHHHheeeEecChhhchHHHHHHhhh-cChhhhhhHHHHHhhh
Confidence 45667777777776655555554432 22 34444444444555567777777777766654 66753 355566666
Q ss_pred HHhcCCHHHHHHHHHHhhccCCccchh
Q 001911 964 LIRVNKWEEALQLSYSICHTDINWLQE 990 (997)
Q Consensus 964 y~~~g~~~eA~~~~~~~~~~~~~~~~~ 990 (997)
....| ..+|+.+++-|..--..|.|+
T Consensus 617 CAGtG-~~eAi~lLepl~~D~~~fVRQ 642 (929)
T KOG2062|consen 617 CAGTG-LKEAINLLEPLTSDPVDFVRQ 642 (929)
T ss_pred hcCCC-cHHHHHHHhhhhcChHHHHHH
Confidence 66666 477888888877655555443
No 373
>PRK09687 putative lyase; Provisional
Probab=71.85 E-value=1.3e+02 Score=31.36 Aligned_cols=136 Identities=19% Similarity=0.145 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK-RLDLALKVISKMLEDSYAPNVVIYTEMI 751 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li 751 (997)
+..+-...+.++.+.++ .+++..+-.+.+. ++..+-...+.++.+.+ ..+.+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444455556655555 3455555555542 23344444444444432 23355555555553 24555556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 752 DGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHC 824 (997)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~ 824 (997)
.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.+|
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 66666666 34555555555432 2 233556666677764 577777777664 34555544444444
No 374
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.71 E-value=12 Score=31.06 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=45.5
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNK-WEEALQLSYSI 980 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~-~~eA~~~~~~~ 980 (997)
..++...+.+|+ |......++..+...|++++|++.+-.+++..-.. +..+-..++.++-..|. ..-+.++..++
T Consensus 9 ~al~~~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 9 AALEAALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 344455555554 77777788888888888888888888888754333 24556667777777776 34455544443
No 375
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.45 E-value=1.4e+02 Score=31.29 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHhCCCCCCH----
Q 001911 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEE----KGCYPNVVTYTAMID-GFGKVGKVDKCLELLRQMSSKGCAPNF---- 814 (997)
Q Consensus 744 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~---- 814 (997)
...+-.....||+.|+.+.|.+.+.+..+ .|.+.|+..+..=+. .|..+.-+.+-++-.+.+.++|..-+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34566667789999999999998877654 377777766654333 344455566777777788887755432
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIE 857 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 857 (997)
.+|..+- |....++.+|-.+|-......-+..+..|..++.
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHHHHHH
Confidence 2333332 3345789999999988877776677777776644
No 376
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.03 E-value=7.1 Score=23.84 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=8.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 001911 925 LIESLSLARKIDKAFELYVDMI 946 (997)
Q Consensus 925 l~~~~~~~g~~~~A~~~~~~~~ 946 (997)
++..+...|++++|...+++.+
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3333334444444444444433
No 377
>PRK12798 chemotaxis protein; Reviewed
Probab=70.36 E-value=1.7e+02 Score=31.97 Aligned_cols=216 Identities=13% Similarity=0.074 Sum_probs=107.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHH
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF--GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHC-CASGLLD 831 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~ 831 (997)
...|+..-...++. .+..|+.. ..++.+. .-.|+..+|.+.+..+...-..+....|..|+.+- ....+..
T Consensus 92 lSGGnP~vlr~L~~----~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~ 165 (421)
T PRK12798 92 LSGGNPATLRKLLA----RDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPA 165 (421)
T ss_pred hcCCCHHHHHHHHH----cCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHH
Confidence 34577665444443 33333322 2333333 34689999999998887766666777788887764 4566889
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHH-----hHhHhHHH----HHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHH
Q 001911 832 EAHNLLEEMKQTYWPTHVAGYRKVIE-----GFSREFIV----SLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEVA 901 (997)
Q Consensus 832 ~A~~~~~~m~~~~~~~~~~~~~~~~~-----~~~~~~~~----a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A 901 (997)
+|+++|+...=.- |-.+.--..+-+ ....+... +..++.+.. ..|-.. .+......+.+.++-..-
T Consensus 166 ~Al~~lD~aRLla-PGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~---~S~YA~~F~~~F~~~~~~~~d~~~~ 241 (421)
T PRK12798 166 TALKLLDQARLLA-PGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFR---HSPYASQFAQRFVDLVVRLDDEIRD 241 (421)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhccccccH
Confidence 9999999864321 222111111111 11111111 122222222 112211 223333444444432222
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 001911 902 LELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE---LSTFVHLIKGLIRVNKWEEALQLSY 978 (997)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~y~~~g~~~eA~~~~~ 978 (997)
..+.......++. -....|..++..-...|+.+-|.-.-+++....-..+ ..+...-+-+-.-..+.++|.+.+.
T Consensus 242 ~~l~~~ls~~d~~--~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 242 ARLVEILSFMDPE--RQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHHHHHHHhcCch--hHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 2333333333332 2455677777777777888877777777776431111 1122222222223455777776666
Q ss_pred Hhhc
Q 001911 979 SICH 982 (997)
Q Consensus 979 ~~~~ 982 (997)
.|-.
T Consensus 320 ~I~~ 323 (421)
T PRK12798 320 QIDR 323 (421)
T ss_pred cCCh
Confidence 6544
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.24 E-value=50 Score=28.09 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=50.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 001911 250 RLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMR 329 (997)
Q Consensus 250 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (997)
..++|..+.+-+...+- ....+.-+.+..+..+|+|++|+..= .....||...|-+|-.+ +.|-.+++...+.++.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~-~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLP-QCHCYPDLEPWAALCAW--KLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHH-TTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhc-ccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 46788888887777653 34444455566777888888883222 23346777777766543 6677777777777777
Q ss_pred hCCCCCcHHhH
Q 001911 330 ARSCIPNVVTF 340 (997)
Q Consensus 330 ~~~~~p~~~t~ 340 (997)
..| .|...+|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 4443333
No 379
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.11 E-value=1.3e+02 Score=30.67 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHHhCCCCCCH---
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEE----KGCYPNVVTYTA-MIDGFGKVGKVDKCLELLRQMSSKGCAPNF--- 814 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--- 814 (997)
-...+..+...|++.++.+.+.+++.+..+ .|.+.|+....+ |.-.|....-.++-++..+.|.++|..-+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 356778888999999999999888776554 466666543322 222344555568888889999998755432
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 001911 815 -VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIE 857 (997)
Q Consensus 815 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 857 (997)
.+|..+. +....++.+|-.++-......-+..+..|..+.+
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vr 235 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILPTFESSELISYSRAVR 235 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhccccccccccHHHHHH
Confidence 2333222 3345689999999988887777777777766543
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.09 E-value=9.7 Score=26.48 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC
Q 001911 377 SLIHAYCRSGDYSYAYKLLSKMRKCG 402 (997)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m~~~g 402 (997)
.|..+|...|+.+.|+++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35677788888888888888877644
No 381
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=69.68 E-value=38 Score=28.21 Aligned_cols=63 Identities=21% Similarity=0.418 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHh
Q 001911 352 QLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMR-KCGFQPGYVVYNILIGG 416 (997)
Q Consensus 352 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~ 416 (997)
+.-++.+-++.+....+.|++.+..+.++++.+.+|+.-|.++|+.++ +.|. +...|..++.-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 344566667777777788888888889999999999999999998877 4332 34466666543
No 382
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.47 E-value=1.5e+02 Score=31.09 Aligned_cols=146 Identities=12% Similarity=-0.016 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC------
Q 001911 759 KTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK----VGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASG------ 828 (997)
Q Consensus 759 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g------ 828 (997)
+..+|.+++..+.+.|.. .....|...|.. ..+..+|..+|++..+.|..+...+...+...|...+
T Consensus 92 ~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 355666666655555432 222223333332 3367777777877777764433233333444443321
Q ss_pred -CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHH
Q 001911 829 -LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK----AGRLEVALE 903 (997)
Q Consensus 829 -~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 903 (997)
+...|..++.++... + +......|+.+|.. ..+.++|..
T Consensus 169 ~~~~~A~~~~~~aa~~---------------------------------~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~ 212 (292)
T COG0790 169 YDDKKALYLYRKAAEL---------------------------------G---NPDAQLLLGRMYEKGLGVPRDLKKAFR 212 (292)
T ss_pred HHHHhHHHHHHHHHHh---------------------------------c---CHHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence 112455555444332 1 33445556666644 348899999
Q ss_pred HHHHHhcCCCCCCcchhhHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcC
Q 001911 904 LHEEMTSFSSNSAASRNSTLLLIESLSLAR---------------KIDKAFELYVDMIRKD 949 (997)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~ 949 (997)
.|+++.+.. +......+. .+...| +...|...+......+
T Consensus 213 wy~~Aa~~g-----~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 213 WYKKAAEQG-----DGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHHHHHCC-----CHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 999998875 344555555 455444 6666677777666654
No 383
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.45 E-value=36 Score=33.80 Aligned_cols=70 Identities=20% Similarity=0.082 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCCHH-------HHHHHHHHHhcCCCC---CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 884 AYRILIDHYIKAGRLE-------VALELHEEMTSFSSN---SAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.+.-+++.|...|+.+ .|.+.|+++.+.... ..........++....+.|++++|.+.+.+++..+-.+.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 4556778888888844 456666665543221 233445556677788889999999999999998654443
No 384
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=68.78 E-value=46 Score=27.64 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=27.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
+...-..++..+...|++++|++.+-.+....++. .+...-..++..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~-~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDY-EDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC-CCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-cccHHHHHHHHHHHHcCC
Confidence 34556667777777777777777777776655432 123333344444433343
No 385
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.51 E-value=38 Score=28.54 Aligned_cols=60 Identities=22% Similarity=0.478 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHh
Q 001911 355 RCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRK-CGFQPGYVVYNILIGG 416 (997)
Q Consensus 355 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~ 416 (997)
+..+-++.+....+.|++.+..+.++++.+.+++.-|.++|+.++. .|.. ...|..++.-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHH
Confidence 5556666666777888888888888999999999999999988874 3322 2266666543
No 386
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=67.60 E-value=65 Score=27.76 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=55.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc----CC-------HHHHHHHHHHHHHcCCCCC-HHH
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA----RK-------IDKAFELYVDMIRKDGSPE-LST 956 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~-------~~~A~~~~~~~~~~~~~p~-~~~ 956 (997)
+..+.+.|+.-+|+++++.++...++.......+..=+..+... .+ .-.+++.+.+... +.|+ ...
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~--Lsp~~A~~ 80 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE--LSPDSAHS 80 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc--cChhHHHH
Confidence 45677889999999999999876554222123333333333222 22 3456677777776 7776 455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
++.|++-+...--|+++..-.++-+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 6666666665666777766666543
No 387
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.08 E-value=30 Score=38.72 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHH
Q 001911 792 VGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVN 871 (997)
Q Consensus 792 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 871 (997)
.|+...|..-+............+....|.....+.|...+|-.++.+.....
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------------------------- 672 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------------------------- 672 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc---------------------------
Confidence 47777777777666654212245556666777777777777777776654421
Q ss_pred HhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHH
Q 001911 872 EMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIE 927 (997)
Q Consensus 872 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 927 (997)
..+| -++..++++|....+.+.|++.++.+.++.|+ +..+-+.|..
T Consensus 673 -----~sep--l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~---~~~~~~~l~~ 718 (886)
T KOG4507|consen 673 -----SSEP--LTFLSLGNAYLALKNISGALEAFRQALKLTTK---CPECENSLKL 718 (886)
T ss_pred -----ccCc--hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC---ChhhHHHHHH
Confidence 1122 34566777777778888888888887777665 4445444443
No 388
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.62 E-value=99 Score=34.00 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=12.3
Q ss_pred hcCCHHHHHHHHHHHhc
Q 001911 894 KAGRLEVALELHEEMTS 910 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~ 910 (997)
.+|++++|.-.+-++.+
T Consensus 253 ~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 253 AQGRYDDAVARLYRALE 269 (379)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 46889998866665554
No 389
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=66.47 E-value=31 Score=34.93 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=72.9
Q ss_pred hhHHHHHHhHhHhHHHHHHHHHHhccC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHH---HH
Q 001911 850 AGYRKVIEGFSREFIVSLGLVNEMGKT-DSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTL---LL 925 (997)
Q Consensus 850 ~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~l 925 (997)
.-+..+++.-...+.+-.+.+++.++. |......++..++..|++-++.+.+.+...+.....-.......++. .|
T Consensus 82 ~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRl 161 (412)
T COG5187 82 GRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRL 161 (412)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHH
Confidence 344444444444444433444444432 34444567888888888888888888887776542110011223333 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 926 IESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 926 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
+..|....-+++.++..+.++++|..=+ ..+|..+-.. ..-++.+|-.++-.++.
T Consensus 162 g~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m--~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 162 GLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKM--MRRNFKEAAILLSDILP 220 (412)
T ss_pred HHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHH--HHHhhHHHHHHHHHHhc
Confidence 3444444457888888888888774332 2344444333 23457777777665543
No 390
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.11 E-value=40 Score=32.86 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHHcC
Q 001911 933 RKIDKAFELYVDMIRKD 949 (997)
Q Consensus 933 g~~~~A~~~~~~~~~~~ 949 (997)
|.-+.+.++-+...+.+
T Consensus 119 g~gea~~alreqal~aa 135 (273)
T COG4455 119 GAGEARTALREQALKAA 135 (273)
T ss_pred CcchHHHHHHHHHHhhC
Confidence 34555666666666644
No 391
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=65.99 E-value=39 Score=28.16 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 001911 863 FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
..+..+-++.+...++.|+......-+++|.+.+++..|+++++-...+.+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~ 73 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG 73 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 344555566667778889988888889999999999999999998775543
No 392
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=65.91 E-value=11 Score=22.91 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
.|..++..+...|++++|...++...+..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 467789999999999999999999987654
No 393
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=65.08 E-value=95 Score=27.09 Aligned_cols=100 Identities=17% Similarity=0.093 Sum_probs=63.5
Q ss_pred hHHHHHHH--HHhcCCHHHHHHHHHHHhcC----CCCCC-----cchhhHHHHHHHHHhcCCHHHHHHHHHHHHH----c
Q 001911 884 AYRILIDH--YIKAGRLEVALELHEEMTSF----SSNSA-----ASRNSTLLLIESLSLARKIDKAFELYVDMIR----K 948 (997)
Q Consensus 884 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~~----~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 948 (997)
.|..|..+ ....|.+++|..-++++.+. ++.-. -|...+..|..++...|++++++.-.++.+. +
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 34445543 34568888888888876543 22211 1345666778888889999998877666643 2
Q ss_pred C-CCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 949 D-GSPE-L----STFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 949 ~-~~p~-~----~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
| +..| - .+....+.++-..|+.+||++.++...++
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3 4555 2 34556778899999999999999876543
No 394
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=65.06 E-value=0.86 Score=48.81 Aligned_cols=59 Identities=10% Similarity=-0.008 Sum_probs=45.7
Q ss_pred ccccccCCcccccccchhhhhhhccCCCCCCCCccCCC--CCCCCCCCCCCCCCcccchhhhccccCCCCCC
Q 001911 17 KSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDP--DDPFSTGCSPVESVSSEDFAFLRDSLMNPSAA 86 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (997)
.-||.||.+.|++|+.+.. ++++|-.+|+.....++ ...||. .|+.+.+..|...+...
T Consensus 202 Dl~H~GHi~~L~~A~~lgd--~LIVgV~sD~~v~~~Kg~~~Pi~~~---------~eR~~~v~a~~~Vd~Vv 262 (353)
T PTZ00308 202 DLFHIGHIRVLQKARELGD--YLIVGVHEDQVVNEQKGSNYPIMNL---------NERVLGVLSCRYVDEVV 262 (353)
T ss_pred CCCCHHHHHHHHHHHHhCC--EEEEEEcchHHhHhhcCCCCCCCCH---------HHHHHHHHhhCCCCeEE
Confidence 3589999999999999876 59999998885544442 245566 89999999999876543
No 395
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.97 E-value=2.3e+02 Score=31.19 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=63.0
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 001911 456 QCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIE 535 (997)
Q Consensus 456 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 535 (997)
......|.++.+.+.+...... +.....+...+++...+.|++++|..+-..|....++ +..+........-..|-++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence 3345678888888888776543 2334456777778888888888888888888776655 5554444444444567788
Q ss_pred HHHHHHHHHHHcCC
Q 001911 536 QARNWFDEMVKEGC 549 (997)
Q Consensus 536 ~A~~~~~~m~~~g~ 549 (997)
++.-.++++...+.
T Consensus 409 ~~~~~wk~~~~~~~ 422 (831)
T PRK15180 409 KSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHhccCC
Confidence 88888888776543
No 396
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.83 E-value=3.1e+02 Score=32.59 Aligned_cols=201 Identities=16% Similarity=0.146 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHH-hCCCCCc--HHhHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCC---
Q 001911 299 VPDTVLYTKMISGLCEASLFEEAMDLLNRMR-ARSCIPN--VVTFRILLCGCL-RKRQLGRCKRVLSMMITEGCYPS--- 371 (997)
Q Consensus 299 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~--~~t~~~ll~~~~-~~g~~~~a~~~~~~m~~~g~~~~--- 371 (997)
+.++..|..||. .|+..++-+. ...+.|. ..++-.+...+. ...+++.|+..+++....--.++
T Consensus 27 ~~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 345566666664 3556666665 3333332 234555555555 57788888888887654322222
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCcccccc
Q 001911 372 --PRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKI 449 (997)
Q Consensus 372 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 449 (997)
-.....++..|.+.+... |...+++.++.--......|.-.. +++.
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~f-------------------rll~------------ 145 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAF-------------------RLLK------------ 145 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHH-------------------HHHH------------
Confidence 112345667777776666 887777766421010111111111 1110
Q ss_pred chhHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHCC---------CC
Q 001911 450 NVSNFVQCLCGAGKYEKAYNVIREMMSKG---FIPDTSTYSKVIGYLC--DASEAEKAFLLFQEMKRNG---------LI 515 (997)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~ll~~m~~~g---~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~g---------~~ 515 (997)
+..+...+++..|++.++.+...- ..|-...+..++.+.. +.+..+++.+.++.+.... ..
T Consensus 146 -----~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 146 -----IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred -----HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 111222378888888888876542 2233344444444443 3455677777777663321 12
Q ss_pred CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 001911 516 PDVYTYTILIDNFC--KAGLIEQARNWFDEMV 545 (997)
Q Consensus 516 ~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 545 (997)
|...+|..+++.++ ..|+++.+...++++.
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666666554 5677666666655554
No 397
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.80 E-value=27 Score=25.49 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 914 (997)
++.++-++.+.|++++|.+..+.+++..|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 445677777888888888888888877765
No 398
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.62 E-value=1.7e+02 Score=29.52 Aligned_cols=90 Identities=10% Similarity=0.095 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH
Q 001911 642 YGALIDGLCKVHKVREAHDLLDAMSVVGC----EPN-------NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGC-NPNV 709 (997)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~ 709 (997)
-+.|...|...+.+.+..++++++...-- ..| ...|..=|..|....+-.....++++.+.... -|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 34555666667777777777777654211 111 23455666677777776666677776554321 2333
Q ss_pred HhHHHHHHHH-----HhcCCHHHHHHHH
Q 001911 710 YTYGSLIDRL-----FKDKRLDLALKVI 732 (997)
Q Consensus 710 ~~~~~li~~~-----~~~g~~~~A~~~~ 732 (997)
.. ..+|+-| .+.|++++|-.-|
T Consensus 228 lI-mGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 228 LI-MGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred HH-HhHHHHcCCccccccchHHHHHhHH
Confidence 22 2333333 4566776665443
No 399
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=63.42 E-value=62 Score=27.33 Aligned_cols=51 Identities=12% Similarity=0.016 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 001911 863 FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
..+..+-++.+...++.|........+++|.+.+++..|+++++-...+.+
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 334555666777778899999999999999999999999999998887654
No 400
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=63.02 E-value=2.6e+02 Score=31.34 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc--CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA--RKIDKAFELYVDMIRK-DGSPELSTFVHLIK 962 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~ 962 (997)
..+.+.+.+.|-.++|...|.++...+|. +...+..++..-..+ =+...+..+|+.|... | .|+..|.....
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~---sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~ 538 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELPPF---SLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMK 538 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCc---cHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHH
Confidence 45678888999999999999999998864 666666655543222 2377888899999864 4 56666776666
Q ss_pred HHHhcCCHHHHHHHHHHh
Q 001911 963 GLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 963 ~y~~~g~~~eA~~~~~~~ 980 (997)
.=...|.-+.+-.++-+.
T Consensus 539 ~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRA 556 (568)
T ss_pred hhccCCCcccccHHHHHH
Confidence 555778777776666544
No 401
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=62.47 E-value=11 Score=22.50 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 001911 374 IFHSLIHAYCRSGDYSYAYKLLS 396 (997)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~ 396 (997)
....+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34556677778888888877765
No 402
>PRK10941 hypothetical protein; Provisional
Probab=62.33 E-value=71 Score=32.99 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.+.|-.+|.+.++++.|++..+.+....|+ ++.-+.--+..|.+.|.+..|..-++..++ ..|+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~--~~P~ 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVE--QCPE 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH--hCCC
Confidence 456667899999999999999999998876 888888899999999999999999999998 4564
No 403
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=61.87 E-value=15 Score=35.88 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=46.6
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
...+.++.+.|.++|+++...-|. ....|..++....+.|+.+.|.+.|++.++ +.|+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~--ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLE--LDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch---hhhhhhhcchhhhhcccHHHHHHHHHHHHc--CCcc
Confidence 345678888888999998887654 777888888888888999999999998888 5563
No 404
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.27 E-value=29 Score=38.79 Aligned_cols=76 Identities=16% Similarity=0.020 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
...|++...+.|...+|-.++.+.+.... ..+.++..++.++....+++.|++.++++.+ ..|+ +.+-..|..+
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~---sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~--~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINS---SEPLTFLSLGNAYLALKNISGALEAFRQALK--LTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcc---cCchHHHhcchhHHHHhhhHHHHHHHHHHHh--cCCCChhhHHHHHHH
Confidence 44578888888999999999999887653 2667888899999999999999999999999 5575 7777777776
Q ss_pred HH
Q 001911 964 LI 965 (997)
Q Consensus 964 y~ 965 (997)
-|
T Consensus 720 ~c 721 (886)
T KOG4507|consen 720 RC 721 (886)
T ss_pred HH
Confidence 66
No 405
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.08 E-value=2.6e+02 Score=30.48 Aligned_cols=154 Identities=18% Similarity=0.111 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH-HHhHhHhH-HHHHHHHHHhccCCCCCChhhHHH---
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKV-IEGFSREF-IVSLGLVNEMGKTDSVPIVPAYRI--- 887 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~--- 887 (997)
...++..+...+..+|+.+.|..++++..-. +... ...|..-. ....+ .--.+.....+...|..
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~--------~e~~~~~~F~~~~~~~~~g--~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFA--------FERAFHPSFSPFRSNLTSG--NCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHHHHhhhhhcccccC--ccccCCccccchHHHHHHHH
Confidence 6778888888899999999998888886532 1111 11110000 00000 00000111223333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH-HhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHH
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESL-SLARKIDKAFELYVDMIRK------DGSPELSTFVHL 960 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l 960 (997)
.+..+.+.|-+..|.+..+-+...+|. .|+......+.-| .+.++++--+.+++..... ...|+ .....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~--~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn--~a~S~ 184 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPD--EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN--FAFSI 184 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCC--CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc--HHHHH
Confidence 446778999999999999999998874 3555555556655 4568888888888876551 12344 34555
Q ss_pred HHHHHhcCCH---------------HHHHHHHHHh
Q 001911 961 IKGLIRVNKW---------------EEALQLSYSI 980 (997)
Q Consensus 961 ~~~y~~~g~~---------------~eA~~~~~~~ 980 (997)
+-++...++- ++|.+.+.+.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~A 219 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKA 219 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHH
Confidence 6666667766 7777766543
No 406
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.08 E-value=6 Score=41.05 Aligned_cols=71 Identities=11% Similarity=-0.016 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTF 957 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 957 (997)
.|..-...+.+.+++..|++=+..+++.+|. ...-|-.-+.+....|++++|...+..+.+.++.++...|
T Consensus 150 l~~kr~sv~lkl~kp~~airD~d~A~ein~D---sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 150 LYAKRASVFLKLKKPNAAIRDCDFAIEINPD---SAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSAT 220 (377)
T ss_pred hcccccceeeeccCCchhhhhhhhhhccCcc---cccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHH
Confidence 4455567788889999999999999988765 5555666666777889999999999999998777765443
No 407
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=59.99 E-value=95 Score=31.43 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhc-----CCCCCCcchh-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 898 LEVALELHEEMTS-----FSSNSAASRN-STLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 898 ~~~A~~~~~~~~~-----~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.+.|.+.|+++.+ .+|..+..-. +.+.-+.-|-..|+.++|.++.+++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3567777777654 2332111111 111222233457999999988888766
No 408
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.71 E-value=82 Score=35.72 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=53.9
Q ss_pred HcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 001911 176 ECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAY 255 (997)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 255 (997)
.+.|+.+.|.++..+... + .=|..|..+..++|++..|.++|.+.+.. ..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~s---~---~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEANS---E---VKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhcc---h---HHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHH
Confidence 344555555554443321 1 23777777777777777777777766642 33444444455544444
Q ss_pred HHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh
Q 001911 256 LVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK 295 (997)
Q Consensus 256 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (997)
.+-....+.|. .|....+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 44444444442 22333455566777777776665
No 409
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.52 E-value=2.6e+02 Score=32.79 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=22.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001911 482 DTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMV 545 (997)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 545 (997)
+......++..|.+.|-.+.|..+.+.+-.+-. ...-|..-+..+.++|+......+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445555566666666666666555433211 12334445555556666555555444444
No 410
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.51 E-value=2.3e+02 Score=31.57 Aligned_cols=13 Identities=8% Similarity=-0.135 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhcC
Q 001911 657 EAHDLLDAMSVVG 669 (997)
Q Consensus 657 ~A~~~~~~m~~~~ 669 (997)
+..+-++.|....
T Consensus 298 ~C~~ei~~mk~~~ 310 (413)
T PHA02875 298 KCIIELRRIKSEK 310 (413)
T ss_pred HHHHHHHHHHhhc
Confidence 3445555565543
No 411
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=55.93 E-value=2.5e+02 Score=29.06 Aligned_cols=62 Identities=10% Similarity=0.191 Sum_probs=30.4
Q ss_pred ccccccchhHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 001911 444 VVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSK-GFIPDTSTYSKVIGYLCDASEAEKAFLL 505 (997)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~ 505 (997)
..++..+...++..+++.++|.+-.++++..... +..-|...|..+|......|+..-..++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 3444444455555555555555555555554433 3333444555555555555554444333
No 412
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.67 E-value=1.4e+02 Score=25.60 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 001911 498 EAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFE 577 (997)
Q Consensus 498 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 577 (997)
..++|..+.+.+...+.. ...+--+-+..+...|+|++|+ .. ......||...|-+| +-.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL---l~-~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL---LL-PQCHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH---HH-HTTS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH---Hh-cccCCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 455565655555554321 2223333344455666666661 11 111234555555444 2335566666666666
Q ss_pred HHHhCC
Q 001911 578 TMLSKG 583 (997)
Q Consensus 578 ~m~~~g 583 (997)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555444
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.47 E-value=43 Score=28.02 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=38.3
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 892 YIKAGRLEVALELHEEMTSFSSNSA------ASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 892 ~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..+.|++.+|.+.+.+......... .-......++......|++++|...++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567899999877777654321111 1134455566777778999999999999987
No 414
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=54.28 E-value=2.2e+02 Score=27.78 Aligned_cols=91 Identities=11% Similarity=-0.020 Sum_probs=70.5
Q ss_pred CCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CcchhhH
Q 001911 844 YWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS-AASRNST 922 (997)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 922 (997)
.-.|.+.-|.+.-. .-..|...|..++..+...+......|+..|. .-+.++|+.++.++.+..... .+|+.++
T Consensus 107 S~dP~llYy~Wsr~----~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil 181 (203)
T PF11207_consen 107 SQDPYLLYYHWSRF----GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEIL 181 (203)
T ss_pred CCCccHHHHHhhcc----CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 33455555554322 34578889999998887777777777777666 678999999999998865444 6899999
Q ss_pred HHHHHHHHhcCCHHHHH
Q 001911 923 LLLIESLSLARKIDKAF 939 (997)
Q Consensus 923 ~~l~~~~~~~g~~~~A~ 939 (997)
..|+..+.+.|+++.|-
T Consensus 182 ~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 182 KSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHhcchhhhh
Confidence 99999999999999884
No 415
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=53.52 E-value=4.3e+02 Score=31.02 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001911 538 RNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARM 614 (997)
Q Consensus 538 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 614 (997)
....++++.+-+-.+...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.+.|+......+-..+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444444433333445555666667777777777776665543311 1223444444455555555544444443
No 416
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.44 E-value=4.8e+02 Score=31.55 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 001911 677 YDALIDGFCKVGKLDEAQMVFSK 699 (997)
Q Consensus 677 ~~~li~~~~~~g~~~~A~~~~~~ 699 (997)
|..++.-+...+.+++|++++..
T Consensus 533 ~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 533 YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666666665544
No 417
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.14 E-value=3e+02 Score=28.53 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=8.1
Q ss_pred hHHHHHHHHHhcCCHHH
Q 001911 711 TYGSLIDRLFKDKRLDL 727 (997)
Q Consensus 711 ~~~~li~~~~~~g~~~~ 727 (997)
+|.-|+.+++..|+.+.
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 34444555555554443
No 418
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.82 E-value=2.8e+02 Score=28.07 Aligned_cols=208 Identities=16% Similarity=0.156 Sum_probs=129.2
Q ss_pred cCCCCCCceeHHHHHHHH-HhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 001911 632 NNCKEPNVYTYGALIDGL-CKVHKVREAHDLLDAMSVVGCEPN---NIVYDALIDGFCKVGKLDEAQMVFSKMLEH---G 704 (997)
Q Consensus 632 ~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g 704 (997)
..+.+||+..-|..-..- .+...+++|+.-|.+..+...... -.....++..+.+.|++++..+.+.+++.. .
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 345677776655433321 234578999999999877432222 244566788899999999999998887642 1
Q ss_pred C--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-
Q 001911 705 C--NPNVYTYGSLIDRLFKDKRLDLALKVISKMLED-----SYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY- 776 (997)
Q Consensus 705 ~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 776 (997)
+ .-+..+.|++++......+.+.-.++++.-++. +-.....|-+.|...|...|.+..-.++++++......
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1 234567778887777666666655555543321 11222344566777888888888888888887653111
Q ss_pred ---CC-------HHHHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHH
Q 001911 777 ---PN-------VVTYTAMIDGFGKVGKVDKCLELLRQMSS-KGCAPNFVTYRVLI----NHCCASGLLDEAHNLLEE 839 (997)
Q Consensus 777 ---p~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~ 839 (997)
.| ...|..-|..|....+-.+-..+|++.+. +...|.+.....+- ....+.|++++|..-|=+
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHH
Confidence 11 34566667777777777777777777654 33455554433322 234567888887654433
No 419
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.62 E-value=1.6e+02 Score=30.13 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=38.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-----
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFG----- 790 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----- 790 (997)
|.++...+++.+++...-+..+.--+..+.+...-|-.|.+.|....+.++-..-.+..-.-+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 445555555555555444433321112223333334445566665555555554443211112223444444333
Q ss_pred ccCCHHHHHHHH
Q 001911 791 KVGKVDKCLELL 802 (997)
Q Consensus 791 ~~g~~~~A~~l~ 802 (997)
=.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666665554
No 420
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=50.19 E-value=1.9e+02 Score=26.02 Aligned_cols=70 Identities=9% Similarity=0.089 Sum_probs=45.8
Q ss_pred CChhhHHHHHHHHHhcC---CHHHHHHHHHHHhc-CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 880 PIVPAYRILIDHYIKAG---RLEVALELHEEMTS-FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
++..+-..+++++.+.. +..+.+.+++...+ .+| .........|+-++.+.++|+++.++...+++ ..||
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~--~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~ 103 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHP--ERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPN 103 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCc--ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCC
Confidence 44445555777776665 45556677777765 222 23445555677788888888888888888887 5565
No 421
>PHA02875 ankyrin repeat protein; Provisional
Probab=48.08 E-value=4.3e+02 Score=29.46 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=21.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHH
Q 001911 490 IGYLCDASEAEKAFLLFQEMKRNGLIPDVY--TYTILIDNFCKAGLIEQARNWF 541 (997)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 541 (997)
+...+..|+.+ +.+.+.+.|..|+.. .....+...++.|+.+.+..++
T Consensus 39 L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 39 IKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 34444555544 333334444443321 1122344455667766554444
No 422
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.74 E-value=3.3e+02 Score=28.03 Aligned_cols=81 Identities=17% Similarity=0.111 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHH-HHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYR-ILIDH 891 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~ 891 (997)
+......+...|.+.|++.+|+..|-.-.. ...+.. ..++..-...+.+...+.|. ..+--
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~------~~~~~~------------~~ll~~~~~~~~~~e~dlfi~RaVL~ 150 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTD------PSAFAY------------VMLLEEWSTKGYPSEADLFIARAVLQ 150 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-H------HHHHHH------------HHHHHHHHHHTSS--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCC------hhHHHH------------HHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 677788888899999999988887732111 111110 00111111112222333332 23344
Q ss_pred HHhcCCHHHHHHHHHHHhcC
Q 001911 892 YIKAGRLEVALELHEEMTSF 911 (997)
Q Consensus 892 ~~~~g~~~~A~~~~~~~~~~ 911 (997)
|.-.|+...|..+++...+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 66778999999988877654
No 423
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=47.31 E-value=2.2e+02 Score=29.27 Aligned_cols=87 Identities=11% Similarity=0.118 Sum_probs=36.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 001911 525 IDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCK---- 600 (997)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---- 600 (997)
|.+++..+++.+++.+.-+.-+.--+.-......-|-.|.+.+.+..+.++-..-++..-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555544443332211112222333344455555555555554444433222222334444444433
Q ss_pred -cCCHHHHHHHH
Q 001911 601 -AGDIERACRIY 611 (997)
Q Consensus 601 -~g~~~~A~~~~ 611 (997)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555544
No 424
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=47.20 E-value=3.9e+02 Score=28.62 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHH
Q 001911 726 DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK---VGKVDKCLELL 802 (997)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~l~ 802 (997)
+.-+.+++++++.+ +.+...+-.++..+.+....++..+.++++...... +...|...+..... .-.+++...+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44555666666553 344555556666666666666666666666665222 45555555544332 22345555555
Q ss_pred HHHHhC------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001911 803 RQMSSK------GC------APN-----FVTYRVLINHCCASGLLDEAHNLLEEMKQTY 844 (997)
Q Consensus 803 ~~m~~~------g~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 844 (997)
.+.+.. |. .|+ ...+..+...+..+|..+.|..+++.+.+-.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 444331 11 111 1123333344567899999999999887754
No 425
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.13 E-value=4.1e+02 Score=28.92 Aligned_cols=63 Identities=21% Similarity=0.135 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEHGC--NPNVYTYGSLIDRLFKDKRLDLALKVISKMLE 737 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 737 (997)
..+.-+.+.|..+|+++.|++.|.+..+.-- +-....|..+|..-.-.|++.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3456677777788888888888877554311 11222344444444556666666666666554
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.98 E-value=35 Score=25.93 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 953 ELSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 953 ~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
|..-....+.+|...|++++|.++++.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344556666666666666666665543
No 427
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.34 E-value=3.2e+02 Score=31.23 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH----------------HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHH
Q 001911 213 NGFWNVALEELGRLKDFGYKPTQ----------------AIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCF 276 (997)
Q Consensus 213 ~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 276 (997)
++..+.++-.|++.....+.|.. -+.-.-+..+.+.|.+..|+++...+.+.....|+.....+
T Consensus 304 adLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ 383 (665)
T KOG2422|consen 304 ADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYL 383 (665)
T ss_pred HHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHH
Q ss_pred HHHHH-hcCCHHHHHHHHHh------CCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCcHHh
Q 001911 277 AYSLC-KAGRWKEALELIEK------EEFVPDTVLYTKMISGLCEASL---FEEAMDLLNRMRARSCIPNVVT 339 (997)
Q Consensus 277 i~~~~-~~g~~~~A~~~~~~------~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~t 339 (997)
|+.|+ +..+++.-+++++. ...-||--.-.+|...|..... -+.|...+.+.... .|.+..
T Consensus 384 ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~--~P~vl~ 454 (665)
T KOG2422|consen 384 IDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH--HPLVLS 454 (665)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh--CcHHHH
No 428
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.32 E-value=3.5e+02 Score=27.81 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=31.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH-------HHHHHHHhcCCHHHHH
Q 001911 644 ALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYD-------ALIDGFCKVGKLDEAQ 694 (997)
Q Consensus 644 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-------~li~~~~~~g~~~~A~ 694 (997)
-+.+-..+.+++++|...+.++...|+..|..+.| .+...|...|+...--
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 34555667777888888888887777666654433 3444555555544433
No 429
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.80 E-value=43 Score=25.41 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 795 VDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 795 ~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
+++..++++.+... .-|..-...++.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555442 33555566677777788888888877777654
No 430
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.43 E-value=31 Score=33.71 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=30.0
Q ss_pred CChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhc
Q 001911 143 KKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGN 193 (997)
Q Consensus 143 ~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~ 193 (997)
.+++....+..|+.+-..+.|++.+|..++.++...|+.++|.++..++..
T Consensus 122 ~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 122 PDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555566666656666666666666666666666666555555543
No 431
>PRK10941 hypothetical protein; Provisional
Probab=44.12 E-value=93 Score=32.16 Aligned_cols=59 Identities=12% Similarity=-0.039 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 922 TLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 922 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..++-.+|.+.++++.|+++.+.++. +.|| +.-+...|-+|.+.|.+..|..=++.-++
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33466677889999999999999999 7896 77788899999999999999987775543
No 432
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=42.92 E-value=4.5 Score=41.01 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=47.3
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCCC--CCCCCCCCCCCCCcccchhhhccccCCCCCCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPD--DPFSTGCSPVESVSSEDFAFLRDSLMNPSAADSVP 90 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (997)
-||-||.-.||.||.|.. ++|+|=-+|+...-+++. ..|+- -|+-.++-.|++++...+-.|
T Consensus 209 LFH~GHl~~Le~ak~lgd--yLIvGI~~D~~vneykgs~~PiMnl---------~ER~LsvlackyVdeVvvGaP 272 (358)
T KOG2803|consen 209 LFHAGHLDFLEKAKRLGD--YLIVGIHTDQTVNEYKGSNYPIMNL---------HERVLSVLACKYVDEVVVGAP 272 (358)
T ss_pred hhccchHHHHHHHHhccC--ceEEEeecCcchhhhccCCCccchH---------HHHHHHHhhhcccceEEEcCc
Confidence 489999999999999999 899998877755444432 23444 789999999998876655444
No 433
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.89 E-value=4e+02 Score=27.49 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=48.3
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH----HHHHHhCCCCCcHHhHHHHHHHHHhcCChh-HH
Q 001911 282 KAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDL----LNRMRARSCIPNVVTFRILLCGCLRKRQLG-RC 356 (997)
Q Consensus 282 ~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~-~a 356 (997)
+++++++|.+++.+ -...+.+.|+...|-++ .+-..+.+.++|......++..+...+.-+ +-
T Consensus 2 ~~kky~eAidLL~~------------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r 69 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS------------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPER 69 (260)
T ss_dssp HTT-HHHHHHHHHH------------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTH
T ss_pred ccccHHHHHHHHHH------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchH
Confidence 45677777776543 11223334444333332 222233444555544444444443332211 12
Q ss_pred HHHHHHHHH---CCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001911 357 KRVLSMMIT---EGCY--PSPRIFHSLIHAYCRSGDYSYAYKLLS 396 (997)
Q Consensus 357 ~~~~~~m~~---~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (997)
..+.+.+++ .|-. -++.....+...|.+.|++.+|+..|-
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 233333332 2222 257778889999999999999998773
No 434
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=42.00 E-value=53 Score=21.02 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001911 934 KIDKAFELYVDMIRKDGSPELSTFVHLIK 962 (997)
Q Consensus 934 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 962 (997)
.++.|..+|++.+. .-|++.+|+..+.
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHHHH
Confidence 46778888888888 5688777776553
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.36 E-value=7.7e+02 Score=30.40 Aligned_cols=217 Identities=14% Similarity=0.126 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001911 676 VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLI 755 (997)
Q Consensus 676 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 755 (997)
.|..|+..|...|+.++|+++|.+..+..-.-|.. .. ..++.-+++++... .++....-...+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~----~~------~~~e~ii~YL~~l~----~~~~~Li~~y~~wv- 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF----QL------DGLEKIIEYLKKLG----AENLDLILEYADWV- 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc----hh------hhHHHHHHHHHHhc----ccchhHHHHHhhhh-
Confidence 48889999999999999999999988742100110 01 11222333333332 22221111111111
Q ss_pred HcCCHHHHHHHHHH---HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---
Q 001911 756 KVGKTEEAYKVMLM---MEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGL--- 829 (997)
Q Consensus 756 ~~g~~~~A~~~~~~---m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~--- 829 (997)
-..+.+.+.++|.. -....+.++ .+-.|......+-++.+++.+....-.++..-.+.++..|+..=+
T Consensus 571 l~~~p~~gi~Ift~~~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~ 644 (877)
T KOG2063|consen 571 LNKNPEAGIQIFTSEDKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQA 644 (877)
T ss_pred hccCchhheeeeeccChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhcc
Confidence 23566777777766 111122222 223456677788899999998876545677777778877764321
Q ss_pred -----HHHHHHH-HHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001911 830 -----LDEAHNL-LEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALE 903 (997)
Q Consensus 830 -----~~~A~~~-~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 903 (997)
.+++.+. +++-.... ....+.+. ....++. .|....|....-.+.+.|+.++|+.
T Consensus 645 ~~~~kg~e~~E~~~rekl~~~------------l~~s~~Y~-p~~~L~~------~~~~~l~ee~aill~rl~khe~aL~ 705 (877)
T KOG2063|consen 645 STDGKGEEAPETTVREKLLDF------------LESSDLYD-PQLLLER------LNGDELYEERAILLGRLGKHEEALH 705 (877)
T ss_pred CchhccccchhhhHHHHHHHH------------hhhhcccC-cchhhhh------ccchhHHHHHHHHHhhhhhHHHHHH
Confidence 1222222 01100000 00000000 0001111 1334456666666778888888888
Q ss_pred HHHHHhcC-----------CCCCCcchhhHHHHHHHHHhc
Q 001911 904 LHEEMTSF-----------SSNSAASRNSTLLLIESLSLA 932 (997)
Q Consensus 904 ~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~ 932 (997)
++-..+.. .+....+...|..+...|...
T Consensus 706 Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 706 IYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred HHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 77665541 111123667777777777665
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=41.33 E-value=6.9e+02 Score=29.85 Aligned_cols=74 Identities=9% Similarity=0.033 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 001911 275 CFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKR 351 (997)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 351 (997)
..+..+.+.+++.+........ ..+.........+....|+.++|......+-..| .....+...++..+.+.|
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~~--p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPEK--PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 3344555666777666633221 2344445566667777777777766666665444 222333444444444333
No 437
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=41.08 E-value=7e+02 Score=29.81 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=11.9
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 001911 646 IDGLCKVHKVREAHDLLDAM 665 (997)
Q Consensus 646 i~~~~~~g~~~~A~~~~~~m 665 (997)
+.-+....++.+|..+.+.-
T Consensus 670 Vrk~i~akkYkdAf~vCrth 689 (1243)
T COG5290 670 VRKLIAAKKYKDAFDVCRTH 689 (1243)
T ss_pred HHHHHHHhhhhHHHHHHHhe
Confidence 34455566667776666543
No 438
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.03 E-value=4.8e+02 Score=27.92 Aligned_cols=121 Identities=10% Similarity=0.051 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 001911 690 LDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK---VGKTEEAYKV 766 (997)
Q Consensus 690 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~ 766 (997)
.+.-+.+++++++.++ .+.......+..+.+....++..+.+++++... +-+...|...++.... .-.++....+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3455666777777644 355566667777777777777777777777653 3356666666654433 2245555555
Q ss_pred HHHHHHC------CC----CCC-------HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CC
Q 001911 767 MLMMEEK------GC----YPN-------VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC-AP 812 (997)
Q Consensus 767 ~~~m~~~------g~----~p~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p 812 (997)
|.+..+. +. .+- ...+..+...+..+|..+.|+.+++.+++.++ .|
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence 5544321 11 011 11233334445688999999999999998654 44
No 439
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=39.76 E-value=64 Score=35.56 Aligned_cols=70 Identities=11% Similarity=-0.021 Sum_probs=55.1
Q ss_pred CCChhhHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 879 VPIVPAYR-ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 879 ~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.|+...|. .-..++.+.+++..|+.=+.++.+..|. ....|..-+.++...+++.+|...|+.... +.|+
T Consensus 34 dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~--l~Pn 104 (476)
T KOG0376|consen 34 DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT---YIKAYVRRGTAVMALGEFKKALLDLEKVKK--LAPN 104 (476)
T ss_pred CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch---hhheeeeccHHHHhHHHHHHHHHHHHHhhh--cCcC
Confidence 46555443 3446788889999999888888888765 677777778888888999999999999888 7786
No 440
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.54 E-value=67 Score=31.32 Aligned_cols=47 Identities=17% Similarity=0.079 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
..++..++..... |++.++..++..+...|+.++|....+++.. +-|
T Consensus 129 ~~~~~a~~~l~~~----P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRR----PDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred HHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 3334444444433 3666777777777777777777777777766 555
No 441
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=38.13 E-value=1.8e+02 Score=25.78 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 001911 763 AYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK 808 (997)
Q Consensus 763 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 808 (997)
..+-++.+...++.|++.....-+.+|.+-+++..|+.+|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344444555556666666666666666667777777666666654
No 442
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.87 E-value=2.5e+02 Score=25.08 Aligned_cols=43 Identities=9% Similarity=0.036 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 937 KAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYS 979 (997)
Q Consensus 937 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~ 979 (997)
.+..+|+.|..+|+=-. +..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88899999999876555 67888999999999999999998875
No 443
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.61 E-value=2.1e+02 Score=24.78 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 001911 203 LNVLIHKCCRNGFWNVALEELGRLKD 228 (997)
Q Consensus 203 ~~~li~~y~~~g~~~~A~~~~~~m~~ 228 (997)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 78888888888888888888888766
No 444
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.49 E-value=55 Score=32.21 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=49.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 928 SLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 928 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
...+.++.+.|.++|.++++ +.|+ ...|..++..--+.|+.+.|.+-|++.++.+.+
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34567999999999999999 7786 889999999999999999999999988776543
No 445
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.48 E-value=7.7e+02 Score=29.29 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=23.2
Q ss_pred ccccchhHHHHHHHccCCHHHHHHHHHHHHHC
Q 001911 446 LNKINVSNFVQCLCGAGKYEKAYNVIREMMSK 477 (997)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~ 477 (997)
.....+..+.+||.-..+.+.+.++++++.+.
T Consensus 208 ~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 208 LPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred CCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 33445566677777888888888888888764
No 446
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.72 E-value=71 Score=27.60 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 921 STLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 921 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 566777777777777777777777665
No 447
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=36.59 E-value=1e+02 Score=25.74 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=40.1
Q ss_pred HhcCCHHHHHHHHHHHHHcC---CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 930 SLARKIDKAFELYVDMIRKD---GSPE-----LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 930 ~~~g~~~~A~~~~~~~~~~~---~~p~-----~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
.+.|++.+|.+.+.+..... ..+. ..+...++..+...|++++|+..++.....
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46799999977777775522 1111 346678999999999999999999887654
No 448
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=36.43 E-value=87 Score=32.16 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=51.1
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV 958 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 958 (997)
-..+.|+.++|..+|+.+....|. ++.+...++.-....++.=+|-++|-+++. +.|. .++..
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~---~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--isP~nseALv 188 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPT---NPQILIEMGQFREMHNEIVEADQCYVKALT--ISPGNSEALV 188 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCC---CHHHHHHHhHHHHhhhhhHhhhhhhheeee--eCCCchHHHh
Confidence 346789999999999999998876 888888888887778888999999988887 7773 44443
No 449
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.41 E-value=1.4e+02 Score=21.23 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=12.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 349 RKRQLGRCKRVLSMMITEGCYPSPRIFHS 377 (997)
Q Consensus 349 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 377 (997)
+.|-..++..+++.|.+.|+.-+...+..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 33444444444444444444444444433
No 450
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.11 E-value=4e+02 Score=25.57 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=23.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 001911 378 LIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGI 417 (997)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 417 (997)
.+-.|.+.|.+++|.+++++... .|+......-+..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~I 153 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHH
Confidence 45567788888888888888776 35554444444333
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.86 E-value=62 Score=35.43 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCC-----CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSN-----SAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.|++.++-.|++..|++.++.+.-.... ..-...++..++.+|.-.++|.+|++.+..++-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666677777777777655321100 012344555566666666666666666666554
No 452
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=35.80 E-value=4.9 Score=36.00 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=37.2
Q ss_pred ccccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCC
Q 001911 17 KSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSA 85 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (997)
.-||.||.+-+++|+.+.. +.+++-.+|++..-.++ ++.-...++.+.+++|...+..
T Consensus 8 Dg~H~GH~~~l~~a~~~~~--~~iv~v~~d~~~~~~~~---------~~i~~~eeR~~~l~~~~~Vd~v 65 (125)
T TIGR01518 8 DLLHWGHINLLERAKQLGD--YLIVALSTDEFNLQKQK---------KAYHSYEHRKLILETIRYVDLV 65 (125)
T ss_pred CCCCHHHHHHHHHHHHcCC--EEEEEEechHHHhhcCC---------CCCCCHHHHHHHHHcCCCccEE
Confidence 3589999999999998753 36666566663211111 1122337889999999854443
No 453
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=35.29 E-value=64 Score=19.81 Aligned_cols=14 Identities=21% Similarity=0.506 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHH
Q 001911 934 KIDKAFELYVDMIR 947 (997)
Q Consensus 934 ~~~~A~~~~~~~~~ 947 (997)
+.+.|..+|+++++
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34444455555544
No 454
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.24 E-value=1.8e+02 Score=32.08 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
..+...|++..+-.|++..|++.++.+.-... .+...-..-.+.+++-++-+|.
T Consensus 122 YFSligLlRvh~LLGDY~~Alk~l~~idl~~~--------------------------~l~~~V~~~~is~~YyvGFayl 175 (404)
T PF10255_consen 122 YFSLIGLLRVHCLLGDYYQALKVLENIDLNKK--------------------------GLYTKVPACHISTYYYVGFAYL 175 (404)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHhhccCcccc--------------------------hhhccCcchheehHHHHHHHHH
Confidence 34566778888899999999999887632110 0111111123457888999999
Q ss_pred hcCCHHHHHHHHHHHhc
Q 001911 894 KAGRLEVALELHEEMTS 910 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~ 910 (997)
..+++.+|++.|...+.
T Consensus 176 MlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 176 MLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998763
No 455
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.19 E-value=2.4e+02 Score=28.79 Aligned_cols=64 Identities=19% Similarity=0.158 Sum_probs=44.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 918 SRNSTLLLIESLSLARKIDKAFELYVDMIRK---DGSPE--LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 918 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
.......++..|...|++++|.++++.+... +--.+ ..+...|..++.+.|+.++.+.+.=++.
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3445556788888889999999999888542 11122 4567788888889998888777654443
No 456
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.16 E-value=3.9e+02 Score=30.49 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=37.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001911 784 AMIDGFGKVGKVDKCLELLRQMSSKGC-APNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYW 845 (997)
Q Consensus 784 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 845 (997)
.++.-|.+.+++++|+.++..|-=.-. .--..+.+.+++.+.+..--++.+..++.+.....
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ 475 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFY 475 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcc
Confidence 466677778888888887777643211 01233444455566666666677777777766543
No 457
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.16 E-value=1.3e+02 Score=31.95 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001911 898 LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLI 965 (997)
Q Consensus 898 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~ 965 (997)
.++....++.+++.-|...--...|..++......|..+..+.+|++++..|..|=-+.-..+++++-
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 44566666666655444333457788899988899999999999999999998885555555666654
No 458
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=34.76 E-value=2.3e+02 Score=23.32 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=15.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 001911 566 ARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIE 605 (997)
Q Consensus 566 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 605 (997)
.|+.+.|.+++..+. .| +..|...+.++...|.-+
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 345555555555554 32 223444444444444433
No 459
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=34.23 E-value=99 Score=20.43 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 001911 957 FVHLIKGLIRVNKWEEALQL 976 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~ 976 (997)
+..++-.+...|++++|+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44455555555555555555
No 460
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=34.11 E-value=2.7e+02 Score=22.95 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=20.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 001911 530 KAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQA 572 (997)
Q Consensus 530 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A 572 (997)
..|+.+.|.+++..+. +|. ..|...+.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 3455666666666665 432 2455555555555544433
No 461
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.04 E-value=5.3e+02 Score=26.09 Aligned_cols=33 Identities=21% Similarity=0.086 Sum_probs=21.8
Q ss_pred CCCChhhHHHHH-----HHHHhcCCHHHHHHHHHHHhc
Q 001911 878 SVPIVPAYRILI-----DHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 878 ~~p~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~ 910 (997)
++|..|.+..|+ ..|...|+.++|.++.+.+..
T Consensus 160 L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 160 LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456666444333 355678999999999888764
No 462
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.78 E-value=4e+02 Score=26.54 Aligned_cols=56 Identities=29% Similarity=0.281 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHH
Q 001911 924 LLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIK----GLIRVNKWEEALQLSYS 979 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~y~~~g~~~eA~~~~~~ 979 (997)
.-+......|+.++|++....+.-.=+.-|...+.+|-. -+.+.|+.++|+++.+.
T Consensus 69 ~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 69 LQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334444556777777776665422111112222333322 23466777777777654
No 463
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=32.66 E-value=6.8 Score=30.12 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=22.2
Q ss_pred cccccccCCcccccccchhhhhhhccCCCCCC
Q 001911 16 SKSFIFSHPNQFSRQNFLPAVTRFICTSPPDD 47 (997)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (997)
-..||.||.+.+++|+.+.. ..+++..+++
T Consensus 8 Fdp~H~GH~~~l~~a~~~~~--~~vv~i~~~~ 37 (66)
T TIGR00125 8 FDPFHLGHLDLLERAKELFD--ELIVGVGSDQ 37 (66)
T ss_pred cCCCCHHHHHHHHHHHHhCC--EEEEEECchH
Confidence 35689999999999998877 4555544444
No 464
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=32.62 E-value=4.7e+02 Score=25.34 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.5
Q ss_pred HccCCHHHHHHHHHHHHH
Q 001911 459 CGAGKYEKAYNVIREMMS 476 (997)
Q Consensus 459 ~~~g~~~~A~~ll~~m~~ 476 (997)
.+.|+++.|.++++-|..
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 467899999988888864
No 465
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.50 E-value=7.5e+02 Score=27.63 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 001911 688 GKLDEAQMVFSKMLEHGCNPNVYTYGSLI 716 (997)
Q Consensus 688 g~~~~A~~~~~~m~~~g~~p~~~~~~~li 716 (997)
++++.|+.++..|.+.|..|....-..++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45555555555555555544433333333
No 466
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.29 E-value=3.7e+02 Score=26.74 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 001911 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYP---NVVTYT--AMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVT 816 (997)
Q Consensus 742 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 816 (997)
+...-+|.|+--|.-...+.+|.+.|.. +.|+.| |..+++ .-|......|+.++|++...++.-.-+.-|...
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 3334444444434433444444444433 223333 222222 345555677777777777666543322223322
Q ss_pred HHHHHH----HHHhcCCHHHHHHHHHHHH
Q 001911 817 YRVLIN----HCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 817 ~~~l~~----~~~~~g~~~~A~~~~~~m~ 841 (997)
+..|.. =+.+.|..++|+++.+.=.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 222221 1346677777777776543
No 467
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=31.83 E-value=7.1e+02 Score=27.21 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--------HHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 001911 778 NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLI--------NHCCASGLLDEAHNLLEEMKQTYWPTHV 849 (997)
Q Consensus 778 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~--------~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 849 (997)
+...+..++--+..+.++.+|.++-+.....-..-|..|+..+. .++...|+...-..++.......
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA----- 199 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA----- 199 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh-----
Q ss_pred hhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHH-H
Q 001911 850 AGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVP----AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTL-L 924 (997)
Q Consensus 850 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~ 924 (997)
.+..+.. ..+.|++.|...+.++.|..+..+..--...+...-.-|. .
T Consensus 200 ---------------------------tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY 252 (493)
T KOG2581|consen 200 ---------------------------TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYY 252 (493)
T ss_pred ---------------------------hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 001911 925 LIESLSLARKIDKAFELYVDMIRKDGSPELSTF 957 (997)
Q Consensus 925 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 957 (997)
++.+-..+++|..|.+.+-.++. ..|...+.
T Consensus 253 ~GrIkaiqldYssA~~~~~qa~r--kapq~~al 283 (493)
T KOG2581|consen 253 LGRIKAIQLDYSSALEYFLQALR--KAPQHAAL 283 (493)
T ss_pred HhhHHHhhcchhHHHHHHHHHHH--hCcchhhh
No 468
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.61 E-value=6e+02 Score=26.23 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=22.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001911 379 IHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYN 411 (997)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 411 (997)
.+-..+.+++++|...+.++...|+..|..+.|
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 344456777888888888888777777665544
No 469
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=31.54 E-value=7.3 Score=35.88 Aligned_cols=58 Identities=7% Similarity=-0.055 Sum_probs=37.8
Q ss_pred ccccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCC
Q 001911 17 KSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSA 85 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (997)
..+|.||.+.+++|+.+... .+++-.+|+.. ++. .+++.-.+.++.+.+.+|...+..
T Consensus 14 DgvH~GH~~ll~~a~~~~~~--~vv~~~~d~~~---~~~------~~~~i~~~~eR~~~l~~lg~VD~v 71 (144)
T cd02172 14 DLLHPGHVRHLQAARSLGDI--LVVSLTSDRYV---NKG------PGRPIFPEDLRAEVLAALGFVDYV 71 (144)
T ss_pred CCCCHHHHHHHHHHHHhCCe--EEEEEeChHHh---ccC------CCCCCCCHHHHHHHHHccCCccEE
Confidence 46899999999999998764 45565556421 111 112333348899999998854433
No 470
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.46 E-value=4.8e+02 Score=27.37 Aligned_cols=109 Identities=11% Similarity=0.015 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 001911 818 RVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGR 897 (997)
Q Consensus 818 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 897 (997)
..|...|.+.++|+.|...+..+.....+. ..+..--...+..++++|.+.++
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~---------------------------~~d~~~kl~l~iriarlyLe~~d 159 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLVGIPLDTGQK---------------------------AYDVEQKLLLCIRIARLYLEDDD 159 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccCcccchh---------------------------hhhhHHHHHHHHHHHHHHHhcCc
Confidence 346678888999999888886654321000 00001112345668889999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 898 LEVALELHEEMTSFSSNSAASRNSTLLLIESL----SLARKIDKAFELYVDMIRKDGSPEL 954 (997)
Q Consensus 898 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~p~~ 954 (997)
..+|..+.++..-..... .|......+--+| -..+++=+|-+.|.++..+.+.|+.
T Consensus 160 ~veae~~inRaSil~a~~-~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~e~ 219 (399)
T KOG1497|consen 160 KVEAEAYINRASILQAES-SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVDES 219 (399)
T ss_pred HHHHHHHHHHHHHhhhcc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 999999988865332111 2333333332223 2345654454444455544455543
No 471
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.53 E-value=8.5e+02 Score=27.37 Aligned_cols=396 Identities=11% Similarity=0.029 Sum_probs=183.6
Q ss_pred ChhHHHHHHHHHHhCCCCCC--HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHH
Q 001911 568 KPSQANELFETMLSKGCIPN--IVTFTALIDG-HCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGA 644 (997)
Q Consensus 568 ~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (997)
+...+++.++......++-- ..+-..+... +.-..+++.|...+++.-.....- ..+ ....-.++..
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~i--p~f--------ydvKf~a~Sl 93 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSI--PSF--------YDVKFQAASL 93 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccc--ccH--------HhhhhHHHHH
Confidence 44556666665554321111 1222233332 334678888888887764322100 000 0111235677
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHhcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-
Q 001911 645 LIDGLCKVH-KVREAHDLLDAMSVVGC-EP--NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRL- 719 (997)
Q Consensus 645 li~~~~~~g-~~~~A~~~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~- 719 (997)
|.+.|+... .+..+..++++.++..- .| .-.....|+..+.-..++..|.+++.--.+. -.+-...|..++..+
T Consensus 94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls 172 (629)
T KOG2300|consen 94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLS 172 (629)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHHH
Confidence 777888766 78888888888776321 22 1112234666667778888888874322111 012222333222211
Q ss_pred -----H---hcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHHcCCHHHHHHHHHHHHHC---CCC----
Q 001911 720 -----F---KDKRLDLALKVISKMLEDSYAPNVVIY--------TEMIDGLIKVGKTEEAYKVMLMMEEK---GCY---- 776 (997)
Q Consensus 720 -----~---~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~li~~~~~~g~~~~A~~~~~~m~~~---g~~---- 776 (997)
. +..+++.+.....+|.+. ..+|...- +.-+..|.-.|+...+...+++++.. +-.
T Consensus 173 ~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~ 251 (629)
T KOG2300|consen 173 MLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRG 251 (629)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCC
Confidence 1 223455566666666664 34554321 22234455678888777777766542 111
Q ss_pred --------CCHHHHHHHHH----H---------HhccCCHHHHHHHHHHHHh-------C-CCCCCH-----HHHHHHHH
Q 001911 777 --------PNVVTYTAMID----G---------FGKVGKVDKCLELLRQMSS-------K-GCAPNF-----VTYRVLIN 822 (997)
Q Consensus 777 --------p~~~~~~~li~----~---------~~~~g~~~~A~~l~~~m~~-------~-g~~p~~-----~~~~~l~~ 822 (997)
|.+..+.-+-+ + -...|-+++|.++-++.+. . |..|-. .+...++-
T Consensus 252 h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~ 331 (629)
T KOG2300|consen 252 HDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVM 331 (629)
T ss_pred ccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence 22222211111 0 1134555666655554432 2 122211 11112222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC--CCC--chhhHHHHHHhH----h---HhHHHHHHHHHHhccCCCCCChh--hHHHHH
Q 001911 823 HCCASGLLDEAHNLLEEMKQTY--WPT--HVAGYRKVIEGF----S---REFIVSLGLVNEMGKTDSVPIVP--AYRILI 889 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~~~~~~~~~~----~---~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~ 889 (997)
+=.-.|++.+|++-+..|.+-. .|. ......+.++.. + +.++.|..-+.+.-..-..-+.- .-..++
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA 411 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Confidence 2235799999999999987531 222 222222222211 1 12333332222221111011111 112355
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCC----cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--------HH
Q 001911 890 DHYIKAGRLEVALELHEEMTSFSSNSA----ASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELS--------TF 957 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--------~~ 957 (997)
-.|.+.|+.+.-.++.+.+-..+..+. ....++...+.-..+.+++.||...+.+.++. .+.+ ..
T Consensus 412 i~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm---anaed~~rL~a~~L 488 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM---ANAEDLNRLTACSL 488 (629)
T ss_pred HHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh---cchhhHHHHHHHHH
Confidence 667777766655555554432211110 00111222222234567777777777776662 2643 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 001911 958 VHLIKGLIRVNKWEEALQLSY 978 (997)
Q Consensus 958 ~~l~~~y~~~g~~~eA~~~~~ 978 (997)
..|+.+....|+..|+.+...
T Consensus 489 vLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHhcchHHHHhccc
Confidence 345556666677777655444
No 472
>PRK12798 chemotaxis protein; Reviewed
Probab=29.44 E-value=8e+02 Score=27.06 Aligned_cols=192 Identities=17% Similarity=0.138 Sum_probs=120.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHH
Q 001911 757 VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF-GKVGKVDKCLELLRQMSSKGCAPN----FVTYRVLINHCCASGLLD 831 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~ 831 (997)
.|+..+|.+.+..+.-...++....|-.|+.+- ....+..+|+++|+...-. .|. ......-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 588899999998887766777777788887654 4567889999999887654 464 334555556677889998
Q ss_pred HHHHHHHHHHhcC-CCCchhhHHHH----HHhHhHh--HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001911 832 EAHNLLEEMKQTY-WPTHVAGYRKV----IEGFSRE--FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 832 ~A~~~~~~m~~~~-~~~~~~~~~~~----~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
++..+-.+-...+ .++....+... +-.+..+ ...-.+++..|. ..-....|..+...-...|+.+-|.-.
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d---~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMD---PERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcC---chhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 8887777765543 23333333331 1111111 122223333332 112245777888888899999999999
Q ss_pred HHHHhcCCCC-CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 905 HEEMTSFSSN-SAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 905 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
-+++...... ..+.......-+.+..-..++++|.+.+..+-...+.|.
T Consensus 280 s~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 280 SERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
Confidence 9998876422 122222222222233345779999998888777666663
No 473
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.37 E-value=95 Score=24.70 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=8.8
Q ss_pred cCCHHHHHHHHHHHHH
Q 001911 932 ARKIDKAFELYVDMIR 947 (997)
Q Consensus 932 ~g~~~~A~~~~~~~~~ 947 (997)
.|++++|+.+|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4555555555555544
No 474
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.28 E-value=8e+02 Score=27.00 Aligned_cols=57 Identities=12% Similarity=0.023 Sum_probs=37.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHH--hcCChhHHHHHHHHHHHC
Q 001911 207 IHKCCRNGFWNVALEELGRLKDFGYKPTQA--IYNALIQVFL--RADRLDTAYLVYREMLDA 264 (997)
Q Consensus 207 i~~y~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~m~~~ 264 (997)
+....+.++|..|.++|..+... ++++.. .+..+..+|. ..-+++.|...++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445789999999999998876 555544 3444444443 345666787777776654
No 475
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=29.15 E-value=7.3e+02 Score=26.46 Aligned_cols=174 Identities=12% Similarity=0.104 Sum_probs=98.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchhhHHH
Q 001911 784 AMIDGFGKVGKVDKCLELLRQMSS----KGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQ----TYWPTHVAGYRK 854 (997)
Q Consensus 784 ~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~~ 854 (997)
-++..|...+++.+|+.+...+.. ..-++. ...+..=-.+|-...++.+|...+-.... .+.||...+---
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 577788888888888877655543 222222 11222223455666677777777766542 356666544433
Q ss_pred H----HHhHhHhHHHHHHHHHHhccC-C-CCCChhh---HHHHHHHHHhcCCHHHHHHHHHH--HhcCCCCCCcchhhHH
Q 001911 855 V----IEGFSREFIVSLGLVNEMGKT-D-SVPIVPA---YRILIDHYIKAGRLEVALELHEE--MTSFSSNSAASRNSTL 923 (997)
Q Consensus 855 ~----~~~~~~~~~~a~~~~~~~~~~-~-~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~ 923 (997)
+ ++...+++..|...|-+..+. . ...+..+ +.-|+-+-...+..++.-.++.. ..+.. .++..++.
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~---g~~i~Amk 289 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYA---GRDIDAMK 289 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhcc---CcchHHHH
Confidence 3 333446777777777766542 1 1122222 22333344556777776666543 22322 24777888
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 924 LLIESLSLA--RKIDKAFELYVDMIRKDGSPELSTFVHLIKGL 964 (997)
Q Consensus 924 ~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y 964 (997)
.++.++.+. .+++.|+.-|+.=+. -|+.+..|+...|
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~----~D~ivr~Hl~~Ly 328 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELA----EDPIVRSHLQSLY 328 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHh----cChHHHHHHHHHH
Confidence 888877554 578888888777544 3555555555444
No 476
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.00 E-value=1.9e+02 Score=20.57 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=21.0
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 001911 212 RNGFWNVALEELGRLKDFGYKPTQAIYNALIQ 243 (997)
Q Consensus 212 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 243 (997)
+.|...++...+++|.+.|+.-+...|..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 45666677777777777776666666665553
No 477
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.94 E-value=4.2e+02 Score=23.64 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 797 KCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEE 839 (997)
Q Consensus 797 ~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (997)
.+.++|+.|..+|+.-. ..-|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888888777664 66677777788888888888888764
No 478
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=28.94 E-value=8e+02 Score=26.88 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=11.8
Q ss_pred hcCCHHHHHHHHHHHhc
Q 001911 894 KAGRLEVALELHEEMTS 910 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~ 910 (997)
.+|++++|.-.+-++.+
T Consensus 258 ~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 258 TQGRYDDAAARLYRALE 274 (380)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 67999998765555443
No 479
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=28.78 E-value=7.3 Score=35.52 Aligned_cols=57 Identities=7% Similarity=-0.028 Sum_probs=36.7
Q ss_pred ccccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCC
Q 001911 17 KSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPS 84 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (997)
..||.||.+-+++|+.... ..+++..+|+.....++...+|. .++.+.+..|...+.
T Consensus 11 D~~H~GH~~ll~~a~~~~~--~l~v~v~~~~~~~~~~~~~~~~~---------~eR~~~l~~~~~vd~ 67 (136)
T cd02170 11 DIIHPGHIRFLEEAKKLGD--YLIVGVARDETVAKIKRRPILPE---------EQRAEVVEALKYVDE 67 (136)
T ss_pred CCCCHHHHHHHHHHHHhCC--EEEEEECCcHHHHhcCCCCCCCH---------HHHHHHHHcCCCcCE
Confidence 4689999999999998763 46666665542111111123333 888899998865443
No 480
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.95 E-value=4.4e+02 Score=31.84 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=25.3
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEM 840 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 840 (997)
...|+++.|++..+++ -+..+|..|+..-.++|+.+-|+..+++.
T Consensus 654 Le~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3456666665544332 24455666666666666666666666553
No 481
>PRK13342 recombination factor protein RarA; Reviewed
Probab=27.78 E-value=8.9e+02 Score=27.02 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=19.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 001911 460 GAGKYEKAYNVIREMMSKGFIPDTSTYSKV 489 (997)
Q Consensus 460 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~l 489 (997)
+..+.+.|+..+..|++.|..|....-..+
T Consensus 242 rgsd~~aal~~l~~~l~~G~d~~~i~rrl~ 271 (413)
T PRK13342 242 RGSDPDAALYYLARMLEAGEDPLFIARRLV 271 (413)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 346777788888888877766654433333
No 482
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.46 E-value=8.1e+02 Score=29.08 Aligned_cols=196 Identities=19% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------HHHHHHHHHHHHHc
Q 001911 691 DEAQMVFSKMLEHGCNPNV---YTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPN----------VVIYTEMIDGLIKV 757 (997)
Q Consensus 691 ~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~ 757 (997)
++-...+.+|...=-.|++ .+...++-.|-...+++..+++.+.+.. -|| ...|.-.++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCC
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---------hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 001911 758 GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF---------GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASG 828 (997)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---------~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g 828 (997)
|+-++|+...-.|.++.-...+..|-...+.| -..+..+.|++.|++..+. .|+...=-.+...+..+|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhh
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 829 LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEM 908 (997)
Q Consensus 829 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 908 (997)
..=+--.-++.+-- .|...+.+.|.+++-.+.++-.
T Consensus 335 ~~Fens~Elq~Igm--------------------------------------------kLn~LlgrKG~leklq~YWdV~ 370 (1226)
T KOG4279|consen 335 EHFENSLELQQIGM--------------------------------------------KLNSLLGRKGALEKLQEYWDVA 370 (1226)
T ss_pred hhccchHHHHHHHH--------------------------------------------HHHHHhhccchHHHHHHHHhHH
Q ss_pred hcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 909 TSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 909 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
- +..+-..++++.+|++..+.|.+ ++|
T Consensus 371 ~---------------y~~asVLAnd~~kaiqAae~mfK--Lk~ 397 (1226)
T KOG4279|consen 371 T---------------YFEASVLANDYQKAIQAAEMMFK--LKP 397 (1226)
T ss_pred H---------------hhhhhhhccCHHHHHHHHHHHhc--cCC
No 483
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.22 E-value=8.3e+02 Score=30.80 Aligned_cols=117 Identities=12% Similarity=0.053 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh----CC-CCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH----HhHHH
Q 001911 273 LGCFAYSLCKAGRWKEALELIEK----EE-FVPD-TVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNV----VTFRI 342 (997)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~----~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ 342 (997)
|...++.+-+-+-.+++.++-.. .+ ..|. ..+++.+-.-....|.+-+|...+-+ .||. .....
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRq 1059 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHH
Confidence 44555666666666666665432 21 1222 33566666667777777777665543 2333 23445
Q ss_pred HHHHHHhcCChh------------HHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001911 343 LLCGCLRKRQLG------------RCKR-VLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLL 395 (997)
Q Consensus 343 ll~~~~~~g~~~------------~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 395 (997)
++..++..|+++ +..+ +++..-+.........|+.|--.+...+++..|--+.
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 555555555543 3333 3333333322233445666655667778887766554
No 484
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.13 E-value=7.8e+02 Score=26.18 Aligned_cols=60 Identities=10% Similarity=0.038 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMI 946 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 946 (997)
.|..-+.+....|++..|+.=..+++...|. ....+..=+.++....++++|....++..
T Consensus 121 LY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~---h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 121 LYTNRAAAQLYLGNYRSALNDCSAALKLKPT---HLKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc---hhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 4555555566667777777777777776654 55555555556666666666655544443
No 485
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=26.77 E-value=8.6e+02 Score=26.53 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=35.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 001911 681 IDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLF-KDKRLDLALKVISKMLE 737 (997)
Q Consensus 681 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~ 737 (997)
+..+.+.|.+..|.++.+-+...++.-|+.....+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4455666777777777777777665556666666666654 55666666666665443
No 486
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.11 E-value=4e+02 Score=25.55 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=15.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 001911 524 LIDNFCKAGLIEQARNWFDEMVK 546 (997)
Q Consensus 524 li~~~~~~g~~~~A~~~~~~m~~ 546 (997)
.+-.|.+.|.+++|.++++....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34556677777777777777765
No 487
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.88 E-value=1.3e+03 Score=28.46 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=89.0
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHhHHHH
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNN---IVYDALIDGFCKVGKL--DEAQMVFSKMLEHGCNPNVYTYGSL 715 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~l 715 (997)
-|..|+..|...|..++|++++.+.....-..|. .-+..+++-+.+.+.. +-.+++-+-.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wv--------------- 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWV--------------- 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhh---------------
Confidence 5999999999999999999999999763210111 1111122222222221 1222221111
Q ss_pred HHHHHhcCCHHHHHHHHHH---HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 001911 716 IDRLFKDKRLDLALKVISK---MLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKV 792 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 792 (997)
-..+.+.+.++|.. -....+.++ .+-.|......+-+..+++.+....-.++....+.++..|+..
T Consensus 571 -----l~~~p~~gi~Ift~~~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 571 -----LNKNPEAGIQIFTSEDKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred -----hccCchhheeeeeccChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 23445555555554 011112222 1223455566667777777776654445666666666665431
Q ss_pred --------CCHHHHHHH--HHH---HHh--CCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 793 --------GKVDKCLEL--LRQ---MSS--KGCAPN--------FVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 793 --------g~~~~A~~l--~~~---m~~--~g~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
++.+++.+. -+. +++ ..+.|+ ..-|....-.+.+.|+.++|+.++-....
T Consensus 640 v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 640 VLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 222333333 111 111 123332 22333334445578888888888766554
No 488
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.73 E-value=2.8e+02 Score=25.51 Aligned_cols=60 Identities=28% Similarity=0.267 Sum_probs=37.4
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcC
Q 001911 224 GRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAG 284 (997)
Q Consensus 224 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 284 (997)
..+++.|++++. --..++..+...+..-.|..+|+++.+.+...+..|..-.++.+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 445566766663 234566777777666788888888888776655555444444444444
No 489
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=25.69 E-value=7.8e+02 Score=25.67 Aligned_cols=64 Identities=2% Similarity=0.074 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 001911 514 LIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKE-GCDPNVVTYTALIHAYLKARKPSQANELFE 577 (997)
Q Consensus 514 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 577 (997)
-.++..+...++..+++.+++.+-.++++.-... +...|...|..+|......|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3556667777888888888888888888776655 556677888888888888888665554443
No 490
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=25.64 E-value=8.4e+02 Score=26.02 Aligned_cols=74 Identities=12% Similarity=0.223 Sum_probs=37.8
Q ss_pred HHHHhhhccCCCHHHHHHH----HHhCCChhHHHHHHHHHhhcCCC--CCCHHHH--HHHHHHHHcCCCCChHHHHHHHH
Q 001911 120 QKFLRQFREKLSESLVVNV----LNLIKKPELGVKFFLWAGRQIGY--SHTPPVY--NALVEIMECDHDDRVPEQFLREI 191 (997)
Q Consensus 120 ~~~~~~~~~~l~~~~~~~v----l~~~~~~~~a~~ff~w~~~~~~~--~~~~~~~--~~l~~~l~~~~~~~~a~~~~~~~ 191 (997)
..|+..|..+.+|--++.+ .++++|.+.|++|..-...+..- .|++..| ..+.+++...|+...+++.+++.
T Consensus 62 ~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~ 141 (380)
T KOG2908|consen 62 LNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDL 141 (380)
T ss_pred HHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4556666666666544433 34456666677666655554321 2233333 23334444455666666555555
Q ss_pred hc
Q 001911 192 GN 193 (997)
Q Consensus 192 ~~ 193 (997)
.+
T Consensus 142 ~~ 143 (380)
T KOG2908|consen 142 KS 143 (380)
T ss_pred HH
Confidence 43
No 491
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.50 E-value=3.7e+02 Score=31.07 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=46.5
Q ss_pred HHhcCCHHHHHHHHHHHhc-CCCCCCcc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 001911 892 YIKAGRLEVALELHEEMTS-FSSNSAAS--RNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRV 967 (997)
Q Consensus 892 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~ 967 (997)
..+..++..+++.|..-.. .+.+...+ ......+.-+|....+.+.|.++++++-+ ..|. +-.......+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~--~d~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE--VDRQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHh
Confidence 3445566666666665333 22111111 22334445555555667777777777666 4453 44444444555556
Q ss_pred CCHHHHHHHHHHhhc
Q 001911 968 NKWEEALQLSYSICH 982 (997)
Q Consensus 968 g~~~eA~~~~~~~~~ 982 (997)
|+-++|+.....+..
T Consensus 442 ~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKS 456 (872)
T ss_pred cchHHHHHHHHHHHh
Confidence 666666666655544
No 492
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=25.44 E-value=57 Score=29.14 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=21.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG 788 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 788 (997)
.+.|.-.+|..+|.+|.+.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3345666777777777777777763 6666544
No 493
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=24.99 E-value=9.2e+02 Score=26.29 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhcCCH----HHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHH
Q 001911 711 TYGSLIDRLFKDKRL----DLALKVISKMLE---DSYAPNVVIYTEMIDGLIK 756 (997)
Q Consensus 711 ~~~~li~~~~~~g~~----~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~ 756 (997)
+|..++.+-.+.+.. +.+.++.+.+.. ...++....+-+.+....+
T Consensus 3 ~w~~~i~s~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~p~LA~lel~~~ 55 (365)
T PF09797_consen 3 VWKLLIDSAFELGKSEEELEDVQEFLESLQAESSQSNPKSRGPYLARLELAKR 55 (365)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHH
Confidence 567777777776543 344445555554 1223344455555555444
No 494
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=24.86 E-value=77 Score=28.34 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 001911 214 GFWNVALEELGRLKDFGYKPTQAIYNALIQV 244 (997)
Q Consensus 214 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 244 (997)
|.-..|-.+|++|++.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 555677788888888888886 56777654
No 495
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.80 E-value=4.3e+02 Score=22.32 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 914 (997)
-.|+-.|.+.|+.+.|.+-|+.=....|.
T Consensus 76 AhLGlLys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhhhhCcc
Confidence 35677778888888888877776666553
No 496
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=24.73 E-value=1.4e+02 Score=20.12 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
++..|+.+-...++|++|..=+.+.++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456666666666666666666655443
No 497
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=24.47 E-value=13 Score=34.50 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=35.4
Q ss_pred ccccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccc
Q 001911 17 KSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDS 79 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (997)
..||.||.+-+++|..+.. +++++.++|++....+....+|. .++.+-++.+
T Consensus 11 DplH~GH~~ll~~A~~~~d--~livgi~~d~~~~~~K~~~i~~~---------e~R~~~v~~~ 62 (153)
T PRK00777 11 DPLHDGHRALLRKAFELGK--RVTIGLTSDEFAKSYKKHKVRPY---------EVRLKNLKKF 62 (153)
T ss_pred CCCCHHHHHHHHHHHHcCC--EEEEEEcCCccccccCCCCCCCH---------HHHHHHHHHH
Confidence 4689999999999999853 58888887875533332223343 6676666643
No 498
>PF13934 ELYS: Nuclear pore complex assembly
Probab=24.46 E-value=7.3e+02 Score=24.90 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=43.5
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHH
Q 001911 280 LCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRV 359 (997)
Q Consensus 280 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 359 (997)
+--.+++++|.+.+-.....|+-. ..++..+...|+.+.|+.++..+.-....+ .....++.. ...+.+.+|..+
T Consensus 88 ~LD~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~ 162 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSF 162 (226)
T ss_pred HhChHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHH
Confidence 334577888888775533233322 236677777788888888887654332122 122222222 445677777665
Q ss_pred HHHH
Q 001911 360 LSMM 363 (997)
Q Consensus 360 ~~~m 363 (997)
-...
T Consensus 163 ~R~~ 166 (226)
T PF13934_consen 163 QRSY 166 (226)
T ss_pred HHhC
Confidence 5544
No 499
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=24.41 E-value=4.7e+02 Score=23.32 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=42.8
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCChHHHHHHHHHH
Q 001911 267 SMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYT-KMISGLCEASLFEEAMDLLNRM 328 (997)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m 328 (997)
+--..+.-++..++.-.|..++|.+++...+.-++-...| -++..|.++.+.++..++-++.
T Consensus 63 P~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 63 PCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3344455666777778888888888888766666655555 5778888887777776665543
No 500
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=23.83 E-value=1.3e+02 Score=31.23 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=21.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001911 782 YTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYR 818 (997)
Q Consensus 782 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 818 (997)
|+..|....+.||+++|+.++++..+.|+.--..+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4456666666666666666666666665544344443
Done!