Query 001911
Match_columns 997
No_of_seqs 767 out of 4858
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 04:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.5E-38 8.6E-43 376.5 42.4 472 281-842 64-544 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.9E-37 1.3E-41 366.2 43.7 523 175-824 63-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1E-26 3.5E-31 259.8 48.9 382 524-969 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-25 4.8E-30 250.5 48.1 379 493-933 9-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-27 3.6E-32 271.2 24.7 204 184-419 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.2E-27 7.4E-32 268.7 24.8 215 355-601 8-223 (501)
7 1xi4_A Clathrin heavy chain; a 99.9 9.2E-19 3.2E-23 207.5 72.4 614 143-844 524-1310(1630)
8 2gw1_A Mitochondrial precursor 99.9 1.1E-22 3.9E-27 236.5 38.2 448 451-960 9-489 (514)
9 2gw1_A Mitochondrial precursor 99.9 1.9E-22 6.6E-27 234.5 39.5 451 484-987 7-482 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 1.3E-21 4.6E-26 223.1 40.3 386 501-973 10-444 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 2.1E-21 7.2E-26 221.5 38.0 329 588-979 26-405 (450)
12 3fp2_A TPR repeat-containing p 99.9 3.5E-21 1.2E-25 225.2 38.7 257 654-947 217-490 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 1.2E-16 4E-21 189.8 75.5 608 129-837 692-1378(1630)
14 3fp2_A TPR repeat-containing p 99.9 1.1E-20 3.8E-25 221.0 34.7 421 451-914 28-494 (537)
15 3ieg_A DNAJ homolog subfamily 99.9 1.5E-18 5E-23 191.0 39.1 320 587-968 2-354 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 3.7E-18 1.3E-22 187.8 39.6 317 639-987 3-339 (359)
17 2xm6_A Protein corresponding t 99.8 1.7E-16 5.7E-21 182.5 50.4 380 503-966 27-452 (490)
18 2xm6_A Protein corresponding t 99.8 3.6E-16 1.2E-20 179.6 50.6 365 537-985 26-434 (490)
19 3hym_B Cell division cycle pro 99.8 1.5E-17 5.2E-22 180.5 34.0 300 635-970 18-321 (330)
20 3hym_B Cell division cycle pro 99.8 3.1E-17 1.1E-21 178.0 33.5 294 585-936 19-322 (330)
21 1fch_A Peroxisomal targeting s 99.8 7.2E-18 2.5E-22 186.4 24.0 291 649-981 35-357 (368)
22 2ooe_A Cleavage stimulation fa 99.8 3.1E-15 1.1E-19 173.8 44.3 408 517-983 12-492 (530)
23 1fch_A Peroxisomal targeting s 99.8 1E-16 3.5E-21 177.0 28.0 298 598-947 35-358 (368)
24 4eqf_A PEX5-related protein; a 99.8 4.1E-17 1.4E-21 180.0 24.1 262 677-979 68-352 (365)
25 2ooe_A Cleavage stimulation fa 99.8 1.1E-14 3.7E-19 169.2 45.6 412 480-952 10-494 (530)
26 3cv0_A Peroxisome targeting si 99.7 3.1E-16 1E-20 169.9 27.7 280 638-982 20-314 (327)
27 4eqf_A PEX5-related protein; a 99.7 9.4E-17 3.2E-21 177.1 23.5 269 637-944 63-352 (365)
28 4g1t_A Interferon-induced prot 99.7 2E-15 6.9E-20 173.0 33.1 384 519-985 52-461 (472)
29 4g1t_A Interferon-induced prot 99.7 2.7E-15 9.3E-20 171.9 33.3 338 587-954 50-405 (472)
30 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.8E-20 161.3 26.3 275 647-977 7-288 (291)
31 3spa_A Mtrpol, DNA-directed RN 99.7 3.1E-17 1E-21 188.9 14.8 151 301-462 126-286 (1134)
32 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.7E-20 161.4 25.8 254 682-985 7-266 (291)
33 3cv0_A Peroxisome targeting si 99.7 1.7E-15 5.9E-20 164.0 27.5 252 636-947 52-314 (327)
34 1b89_A Protein (clathrin heavy 99.7 1.7E-15 5.7E-20 162.4 21.3 281 460-800 15-303 (449)
35 1b89_A Protein (clathrin heavy 99.7 5.1E-15 1.8E-19 158.6 24.5 238 282-564 15-252 (449)
36 3uq3_A Heat shock protein STI1 99.6 2.5E-14 8.6E-19 148.7 24.3 95 884-983 141-236 (258)
37 3spa_A Mtrpol, DNA-directed RN 99.6 4.5E-16 1.5E-20 179.4 10.9 152 672-828 125-286 (1134)
38 2pl2_A Hypothetical conserved 99.6 2E-14 6.9E-19 144.7 21.6 197 741-981 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.6 6.1E-14 2.1E-18 145.8 25.6 237 674-962 5-255 (258)
40 3e4b_A ALGK; tetratricopeptide 99.6 3.2E-14 1.1E-18 160.6 24.4 375 524-981 9-419 (452)
41 2h6f_A Protein farnesyltransfe 99.6 2.1E-13 7.1E-18 148.7 25.4 248 674-967 97-366 (382)
42 1ouv_A Conserved hypothetical 99.6 2.1E-12 7.1E-17 135.5 31.9 221 711-984 8-252 (273)
43 2h6f_A Protein farnesyltransfe 99.6 1.4E-13 5E-18 150.0 22.8 232 709-984 97-349 (382)
44 3u4t_A TPR repeat-containing p 99.6 3.9E-13 1.3E-17 141.0 25.4 252 677-968 6-269 (272)
45 1xnf_A Lipoprotein NLPI; TPR, 99.6 1E-13 3.5E-18 145.7 20.8 248 687-977 18-269 (275)
46 3u4t_A TPR repeat-containing p 99.6 3.7E-13 1.3E-17 141.2 24.0 239 710-988 4-255 (272)
47 3e4b_A ALGK; tetratricopeptide 99.6 3.5E-13 1.2E-17 152.1 25.0 344 559-986 9-390 (452)
48 2pl2_A Hypothetical conserved 99.6 3.7E-13 1.3E-17 135.4 22.5 198 707-946 3-212 (217)
49 1ouv_A Conserved hypothetical 99.5 7.8E-12 2.7E-16 131.1 32.2 224 673-949 5-252 (273)
50 2q7f_A YRRB protein; TPR, prot 99.5 3.4E-13 1.2E-17 138.7 20.4 216 709-966 23-239 (243)
51 2ho1_A Type 4 fimbrial biogene 99.5 1.9E-12 6.5E-17 133.9 24.7 130 710-841 38-168 (252)
52 2ho1_A Type 4 fimbrial biogene 99.5 3.3E-12 1.1E-16 132.1 26.2 200 744-983 37-238 (252)
53 2q7f_A YRRB protein; TPR, prot 99.5 6.6E-13 2.3E-17 136.5 19.9 205 742-987 21-226 (243)
54 4a1s_A PINS, partner of inscut 99.5 2.6E-13 8.9E-18 152.2 17.6 285 676-989 50-378 (411)
55 2vq2_A PILW, putative fimbrial 99.5 8.5E-12 2.9E-16 126.3 27.2 198 711-947 10-210 (225)
56 2vq2_A PILW, putative fimbrial 99.5 4.4E-12 1.5E-16 128.4 25.0 204 742-985 6-213 (225)
57 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.1E-12 3.6E-17 137.8 21.1 250 650-942 16-269 (275)
58 3sf4_A G-protein-signaling mod 99.5 4.6E-13 1.6E-17 149.7 18.2 305 636-970 6-363 (406)
59 3vtx_A MAMA; tetratricopeptide 99.5 3.7E-12 1.3E-16 124.5 21.9 165 778-983 4-170 (184)
60 4abn_A Tetratricopeptide repea 99.5 1.1E-12 3.9E-17 148.9 20.6 217 724-980 83-318 (474)
61 3sf4_A G-protein-signaling mod 99.5 1.4E-12 4.9E-17 145.7 21.0 284 671-983 6-336 (406)
62 3ro2_A PINS homolog, G-protein 99.5 2.2E-12 7.5E-17 139.8 20.6 279 677-985 8-334 (338)
63 3vtx_A MAMA; tetratricopeptide 99.4 1.8E-11 6.1E-16 119.6 22.7 170 743-953 4-173 (184)
64 4a1s_A PINS, partner of inscut 99.4 3.2E-12 1.1E-16 143.3 19.1 277 641-947 50-371 (411)
65 3ulq_A Response regulator aspa 99.4 2E-11 6.7E-16 135.2 23.1 306 649-986 22-371 (383)
66 4e6h_A MRNA 3'-END-processing 99.4 5.2E-09 1.8E-13 121.7 44.1 429 503-953 52-573 (679)
67 3ro2_A PINS homolog, G-protein 99.4 1.5E-11 5.2E-16 133.1 20.5 276 642-947 8-331 (338)
68 4e6h_A MRNA 3'-END-processing 99.4 9.3E-09 3.2E-13 119.6 43.7 437 466-914 50-573 (679)
69 4gyw_A UDP-N-acetylglucosamine 99.4 1.7E-11 5.7E-16 144.5 20.2 164 778-983 8-174 (723)
70 4abn_A Tetratricopeptide repea 99.3 2.2E-11 7.4E-16 138.3 20.4 216 690-945 84-318 (474)
71 2ond_A Cleavage stimulation fa 99.3 3.8E-10 1.3E-14 120.4 28.7 219 691-947 33-269 (308)
72 3nf1_A KLC 1, kinesin light ch 99.3 3.5E-11 1.2E-15 128.7 19.0 215 743-983 26-307 (311)
73 2ond_A Cleavage stimulation fa 99.3 8E-10 2.7E-14 117.8 29.3 238 638-914 7-273 (308)
74 3nf1_A KLC 1, kinesin light ch 99.3 9.8E-12 3.3E-16 133.1 14.4 247 675-947 28-306 (311)
75 3ulq_A Response regulator aspa 99.3 2.2E-10 7.4E-15 126.8 23.8 305 598-947 22-367 (383)
76 3q15_A PSP28, response regulat 99.3 4E-10 1.4E-14 124.3 25.2 315 636-983 7-365 (378)
77 4i17_A Hypothetical protein; T 99.3 5.2E-10 1.8E-14 113.4 22.9 162 742-935 5-169 (228)
78 3as5_A MAMA; tetratricopeptide 99.3 2.5E-10 8.7E-15 111.1 19.6 165 780-984 9-174 (186)
79 4i17_A Hypothetical protein; T 99.2 2.5E-10 8.7E-15 115.7 19.7 170 777-986 5-212 (228)
80 1hz4_A MALT regulatory protein 99.2 2.4E-09 8.2E-14 117.9 28.1 273 680-983 20-322 (373)
81 4gyw_A UDP-N-acetylglucosamine 99.2 2.8E-10 9.6E-15 134.1 20.4 165 742-947 7-173 (723)
82 3as5_A MAMA; tetratricopeptide 99.2 7.6E-10 2.6E-14 107.7 18.6 164 745-947 9-172 (186)
83 3edt_B KLC 2, kinesin light ch 99.2 3.6E-10 1.2E-14 118.8 17.3 201 757-983 14-281 (283)
84 3q15_A PSP28, response regulat 99.2 3.1E-09 1.1E-13 117.1 25.0 235 593-842 106-364 (378)
85 1hz4_A MALT regulatory protein 99.2 5.2E-09 1.8E-13 115.2 26.3 275 643-947 18-321 (373)
86 3qky_A Outer membrane assembly 99.2 1.3E-09 4.6E-14 113.0 20.0 214 742-975 13-253 (261)
87 1qqe_A Vesicular transport pro 99.1 2.1E-09 7.2E-14 113.5 19.3 215 724-984 32-270 (292)
88 3qky_A Outer membrane assembly 99.1 5.1E-09 1.7E-13 108.6 19.9 172 777-984 13-225 (261)
89 2yhc_A BAMD, UPF0169 lipoprote 99.1 6.7E-09 2.3E-13 104.8 20.2 95 888-984 102-214 (225)
90 3mv2_B Coatomer subunit epsilo 99.1 3.6E-08 1.2E-12 101.3 25.1 248 647-953 21-285 (310)
91 3urz_A Uncharacterized protein 99.0 3E-09 1E-13 105.7 16.2 130 819-987 59-190 (208)
92 4ga2_A E3 SUMO-protein ligase 99.0 6.2E-10 2.1E-14 104.0 10.0 144 785-969 3-149 (150)
93 3edt_B KLC 2, kinesin light ch 99.0 4.1E-09 1.4E-13 110.6 17.5 209 710-947 44-280 (283)
94 2pzi_A Probable serine/threoni 99.0 1.9E-09 6.6E-14 128.0 16.0 173 720-934 402-583 (681)
95 3urz_A Uncharacterized protein 99.0 8.3E-09 2.8E-13 102.5 18.0 138 784-963 59-199 (208)
96 1qqe_A Vesicular transport pro 99.0 1E-08 3.5E-13 108.1 18.7 205 719-953 47-272 (292)
97 3rjv_A Putative SEL1 repeat pr 99.0 3.1E-08 1E-12 98.7 20.8 104 728-841 5-116 (212)
98 3dra_A Protein farnesyltransfe 99.0 6.2E-08 2.1E-12 100.9 23.3 218 724-982 48-286 (306)
99 2fo7_A Synthetic consensus TPR 99.0 1.7E-08 5.9E-13 91.8 16.9 131 815-984 2-133 (136)
100 3dra_A Protein farnesyltransfe 99.0 2.8E-07 9.6E-12 96.0 27.7 232 691-962 50-301 (306)
101 3rjv_A Putative SEL1 repeat pr 98.9 1.5E-07 5.2E-12 93.6 23.5 177 762-984 4-198 (212)
102 2yhc_A BAMD, UPF0169 lipoprote 98.9 4.5E-08 1.5E-12 98.6 19.6 208 710-953 5-216 (225)
103 3qou_A Protein YBBN; thioredox 98.9 1.5E-08 5E-13 106.5 16.1 164 777-982 115-283 (287)
104 2r5s_A Uncharacterized protein 98.9 5.8E-09 2E-13 100.5 11.9 159 782-982 9-172 (176)
105 2fo7_A Synthetic consensus TPR 98.9 4.3E-08 1.5E-12 89.2 17.0 129 781-947 3-131 (136)
106 3mv2_B Coatomer subunit epsilo 98.9 1.6E-07 5.3E-12 96.6 22.6 243 683-984 22-283 (310)
107 2pzi_A Probable serine/threoni 98.9 2.2E-08 7.5E-13 118.9 17.8 186 685-911 402-602 (681)
108 4ga2_A E3 SUMO-protein ligase 98.9 2.6E-09 8.9E-14 99.7 7.8 127 820-986 3-132 (150)
109 2vsy_A XCC0866; transferase, g 98.9 2.4E-08 8.2E-13 116.6 17.7 163 757-961 2-169 (568)
110 4gco_A Protein STI-1; structur 98.9 1.4E-08 4.8E-13 91.2 11.9 105 879-988 9-115 (126)
111 3gyz_A Chaperone protein IPGC; 98.9 1E-08 3.5E-13 95.1 11.2 102 879-985 32-135 (151)
112 4gco_A Protein STI-1; structur 98.8 3.9E-08 1.3E-12 88.3 13.5 115 810-963 8-124 (126)
113 3qou_A Protein YBBN; thioredox 98.8 7.8E-08 2.7E-12 100.9 17.3 169 741-947 114-283 (287)
114 2qfc_A PLCR protein; TPR, HTH, 98.8 3.9E-07 1.3E-11 96.0 21.1 173 780-982 76-265 (293)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 1.2E-07 4E-12 100.8 17.1 189 752-975 44-253 (307)
116 2ifu_A Gamma-SNAP; membrane fu 98.8 5.5E-08 1.9E-12 103.3 14.5 212 721-990 3-230 (307)
117 2vsy_A XCC0866; transferase, g 98.8 8E-08 2.7E-12 112.2 17.1 163 722-925 2-168 (568)
118 3gyz_A Chaperone protein IPGC; 98.8 1.3E-07 4.6E-12 87.5 14.9 107 810-955 31-138 (151)
119 2r5s_A Uncharacterized protein 98.7 8.4E-08 2.9E-12 92.3 13.6 162 747-947 9-172 (176)
120 3q7a_A Farnesyltransferase alp 98.7 1E-06 3.5E-11 92.5 22.5 219 723-982 68-330 (349)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2E-07 7E-12 92.8 16.0 129 816-986 8-153 (213)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.8E-07 1.3E-11 90.9 17.9 132 782-953 9-153 (213)
123 2uy1_A Cleavage stimulation fa 98.7 2.7E-05 9.2E-10 87.9 34.6 124 711-842 288-412 (493)
124 3dss_A Geranylgeranyl transfer 98.7 4.1E-06 1.4E-10 87.6 25.1 182 760-984 90-305 (331)
125 3u3w_A Transcriptional activat 98.7 1.2E-06 3.9E-11 92.4 21.4 171 784-982 80-265 (293)
126 2uy1_A Cleavage stimulation fa 98.7 3.4E-05 1.2E-09 87.1 34.4 124 780-947 287-412 (493)
127 4f3v_A ESX-1 secretion system 98.7 6.8E-07 2.3E-11 90.6 17.7 101 884-985 137-239 (282)
128 1a17_A Serine/threonine protei 98.7 4.4E-07 1.5E-11 86.0 15.7 130 814-982 13-145 (166)
129 2vgx_A Chaperone SYCD; alterna 98.6 6.1E-08 2.1E-12 89.9 9.0 98 882-984 21-119 (148)
130 1hxi_A PEX5, peroxisome target 98.6 1.6E-07 5.5E-12 83.6 10.7 99 884-987 19-118 (121)
131 1p5q_A FKBP52, FK506-binding p 98.6 3.6E-07 1.2E-11 98.1 14.8 164 792-982 126-293 (336)
132 2vyi_A SGTA protein; chaperone 98.6 6.9E-07 2.4E-11 80.5 14.3 119 813-970 11-130 (131)
133 3q7a_A Farnesyltransferase alp 98.6 1.6E-05 5.4E-10 83.5 26.1 233 690-962 70-345 (349)
134 3upv_A Heat shock protein STI1 98.6 3.3E-07 1.1E-11 82.4 11.7 97 883-984 5-102 (126)
135 2lni_A Stress-induced-phosphop 98.6 5.8E-07 2E-11 81.4 13.5 118 813-969 15-133 (133)
136 4gcn_A Protein STI-1; structur 98.6 1.9E-07 6.5E-12 83.9 9.9 97 883-984 9-113 (127)
137 1na0_A Designed protein CTPR3; 98.6 1.3E-06 4.3E-11 77.9 15.4 116 814-968 9-125 (125)
138 4f3v_A ESX-1 secretion system 98.6 1.5E-06 5.1E-11 88.1 17.3 204 721-963 18-250 (282)
139 2xcb_A PCRH, regulatory protei 98.6 3.2E-07 1.1E-11 84.5 11.4 98 882-984 18-116 (142)
140 3u3w_A Transcriptional activat 98.6 6.7E-06 2.3E-10 86.5 22.7 171 749-947 80-265 (293)
141 2e2e_A Formate-dependent nitri 98.6 2.9E-07 1E-11 88.6 11.1 101 881-986 43-147 (177)
142 2vgx_A Chaperone SYCD; alterna 98.5 4.7E-07 1.6E-11 83.9 11.9 112 801-953 9-121 (148)
143 2qfc_A PLCR protein; TPR, HTH, 98.5 4.7E-06 1.6E-10 87.7 20.6 172 746-947 77-265 (293)
144 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.6E-11 85.9 15.4 98 884-981 68-174 (203)
145 2c2l_A CHIP, carboxy terminus 98.5 1E-06 3.5E-11 91.9 15.1 97 743-842 3-100 (281)
146 3sz7_A HSC70 cochaperone (SGT) 98.5 4.6E-07 1.6E-11 85.9 11.4 101 882-987 11-112 (164)
147 1a17_A Serine/threonine protei 98.5 2.8E-06 9.7E-11 80.3 16.4 130 780-947 14-145 (166)
148 3upv_A Heat shock protein STI1 98.5 2.4E-06 8.3E-11 76.5 14.8 113 814-965 4-123 (126)
149 3dss_A Geranylgeranyl transfer 98.5 5.2E-05 1.8E-09 79.2 26.6 228 692-963 48-318 (331)
150 2fbn_A 70 kDa peptidylprolyl i 98.5 1.4E-06 4.8E-11 85.5 14.0 179 785-988 10-191 (198)
151 4gcn_A Protein STI-1; structur 98.5 1.8E-06 6.1E-11 77.5 13.4 112 814-961 8-123 (127)
152 2hr2_A Hypothetical protein; a 98.5 1.2E-06 4.1E-11 79.9 12.1 102 883-986 12-134 (159)
153 3q49_B STIP1 homology and U bo 98.5 1.5E-06 5E-11 79.3 12.9 101 880-985 7-108 (137)
154 2kck_A TPR repeat; tetratricop 98.5 1.2E-06 4.1E-11 76.3 11.5 99 882-985 6-108 (112)
155 2lni_A Stress-induced-phosphop 98.4 1.6E-06 5.4E-11 78.4 12.2 99 882-985 16-115 (133)
156 2xcb_A PCRH, regulatory protei 98.4 1.3E-06 4.4E-11 80.3 11.7 104 811-953 14-118 (142)
157 2e2e_A Formate-dependent nitri 98.4 8E-07 2.7E-11 85.4 10.7 124 790-953 21-147 (177)
158 1elw_A TPR1-domain of HOP; HOP 98.4 2.2E-06 7.5E-11 75.4 12.4 100 882-986 4-104 (118)
159 1elw_A TPR1-domain of HOP; HOP 98.4 5.7E-06 1.9E-10 72.7 15.1 112 814-964 4-116 (118)
160 1p5q_A FKBP52, FK506-binding p 98.4 2.6E-06 9E-11 91.4 14.5 129 780-947 148-293 (336)
161 1na0_A Designed protein CTPR3; 98.4 8.6E-06 2.9E-10 72.3 15.5 115 779-931 9-123 (125)
162 2xev_A YBGF; tetratricopeptide 98.4 2.9E-06 9.9E-11 76.3 12.2 98 885-984 5-106 (129)
163 2c2l_A CHIP, carboxy terminus 98.4 2.3E-06 7.9E-11 89.2 13.1 99 708-808 3-101 (281)
164 1elr_A TPR2A-domain of HOP; HO 98.4 3.3E-06 1.1E-10 76.0 12.2 118 814-967 4-125 (131)
165 3sz7_A HSC70 cochaperone (SGT) 98.3 3.6E-06 1.2E-10 79.6 12.8 102 813-953 10-111 (164)
166 2vyi_A SGTA protein; chaperone 98.3 6.3E-06 2.1E-10 74.0 13.8 120 778-935 11-130 (131)
167 3rkv_A Putative peptidylprolyl 98.3 2.3E-06 7.9E-11 80.8 11.0 103 883-987 12-130 (162)
168 3q49_B STIP1 homology and U bo 98.3 4.6E-06 1.6E-10 75.9 12.5 98 813-947 8-105 (137)
169 3gw4_A Uncharacterized protein 98.3 9.3E-06 3.2E-10 79.8 15.4 163 755-947 3-175 (203)
170 2dba_A Smooth muscle cell asso 98.3 6.7E-06 2.3E-10 75.9 13.3 104 881-986 27-131 (148)
171 2dba_A Smooth muscle cell asso 98.3 1.2E-05 4.2E-10 74.1 15.0 112 813-964 27-143 (148)
172 1hxi_A PEX5, peroxisome target 98.3 4E-06 1.4E-10 74.4 10.9 99 816-953 19-117 (121)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 4.8E-06 1.6E-10 93.5 14.0 164 793-982 248-414 (457)
174 2fbn_A 70 kDa peptidylprolyl i 98.3 1.2E-06 4.1E-11 86.1 7.8 156 755-948 15-186 (198)
175 2xev_A YBGF; tetratricopeptide 98.2 1.8E-05 6.1E-10 71.0 14.6 109 817-962 5-118 (129)
176 1wao_1 Serine/threonine protei 98.2 2E-06 6.9E-11 97.0 9.7 121 819-978 11-134 (477)
177 1elr_A TPR2A-domain of HOP; HO 98.2 5.5E-06 1.9E-10 74.4 10.5 98 883-985 5-110 (131)
178 1dce_A Protein (RAB geranylger 98.2 2.8E-05 9.6E-10 89.2 18.7 172 759-972 44-244 (567)
179 1ihg_A Cyclophilin 40; ppiase 98.2 8.9E-06 3E-10 88.2 13.4 90 882-976 273-363 (370)
180 2hr2_A Hypothetical protein; a 98.2 4.8E-06 1.6E-10 75.9 9.1 111 814-952 11-133 (159)
181 3rkv_A Putative peptidylprolyl 98.2 9E-06 3.1E-10 76.6 11.3 126 814-968 11-146 (162)
182 3ro3_A PINS homolog, G-protein 98.2 1.1E-05 3.8E-10 75.6 11.8 142 814-983 9-158 (164)
183 2l6j_A TPR repeat-containing p 98.2 1.6E-06 5.4E-11 75.6 5.3 94 882-980 4-104 (111)
184 3k9i_A BH0479 protein; putativ 98.2 2.2E-06 7.4E-11 75.7 6.1 86 895-982 3-89 (117)
185 4b4t_Q 26S proteasome regulato 98.1 7.6E-05 2.6E-09 83.4 19.3 172 747-947 58-244 (434)
186 2if4_A ATFKBP42; FKBP-like, al 98.1 4.4E-06 1.5E-10 89.6 8.4 98 884-986 232-331 (338)
187 2kck_A TPR repeat; tetratricop 98.1 2.2E-05 7.6E-10 68.0 10.7 99 814-947 6-105 (112)
188 3k9i_A BH0479 protein; putativ 98.0 7.8E-06 2.7E-10 72.0 6.7 91 826-953 2-93 (117)
189 1dce_A Protein (RAB geranylger 98.0 0.00012 4E-09 84.0 18.1 173 724-937 44-244 (567)
190 2if4_A ATFKBP42; FKBP-like, al 98.0 2E-05 6.7E-10 84.6 10.7 152 744-953 179-331 (338)
191 4b4t_Q 26S proteasome regulato 98.0 0.0021 7.4E-08 71.4 27.7 197 646-842 11-244 (434)
192 3ro3_A PINS homolog, G-protein 98.0 4.7E-05 1.6E-09 71.2 11.6 139 780-947 10-157 (164)
193 1wao_1 Serine/threonine protei 97.9 1.3E-05 4.4E-10 90.4 8.7 118 787-943 14-134 (477)
194 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 6.6E-05 2.3E-09 84.2 14.1 97 814-947 317-414 (457)
195 3n71_A Histone lysine methyltr 97.9 0.00013 4.4E-09 81.5 16.2 133 788-947 318-463 (490)
196 1na3_A Designed protein CTPR2; 97.9 6.6E-05 2.2E-09 62.2 10.6 82 882-968 9-91 (91)
197 3n71_A Histone lysine methyltr 97.9 7.6E-05 2.6E-09 83.3 14.0 133 823-982 318-463 (490)
198 1ihg_A Cyclophilin 40; ppiase 97.9 9.1E-05 3.1E-09 80.2 13.5 91 813-940 272-362 (370)
199 2kat_A Uncharacterized protein 97.9 4.4E-05 1.5E-09 66.8 8.9 63 882-947 19-81 (115)
200 1zu2_A Mitochondrial import re 97.9 1.5E-05 5E-10 72.5 5.6 89 893-986 13-123 (158)
201 1klx_A Cysteine rich protein B 97.8 0.00013 4.5E-09 66.2 12.0 111 793-949 9-127 (138)
202 1klx_A Cysteine rich protein B 97.8 0.00028 9.6E-09 63.9 13.3 91 888-986 31-129 (138)
203 1zu2_A Mitochondrial import re 97.8 7.8E-05 2.7E-09 67.8 8.8 72 881-957 35-127 (158)
204 3ma5_A Tetratricopeptide repea 97.6 0.00022 7.4E-09 60.4 8.7 84 881-967 6-90 (100)
205 2kat_A Uncharacterized protein 97.6 0.0002 6.7E-09 62.6 8.7 80 900-984 3-83 (115)
206 3ma5_A Tetratricopeptide repea 97.6 0.00019 6.4E-09 60.8 7.9 64 918-983 6-70 (100)
207 2l6j_A TPR repeat-containing p 97.5 7.3E-05 2.5E-09 64.7 4.3 97 813-943 3-102 (111)
208 2kc7_A BFR218_protein; tetratr 97.5 0.00017 5.9E-09 60.8 6.4 83 887-982 5-89 (99)
209 1na3_A Designed protein CTPR2; 97.3 0.0017 5.8E-08 53.3 10.4 84 813-933 8-91 (91)
210 3qww_A SET and MYND domain-con 97.2 0.00088 3E-08 73.4 9.8 90 894-983 310-411 (433)
211 3qwp_A SET and MYND domain-con 97.1 0.002 6.7E-08 70.8 10.8 94 889-982 294-399 (429)
212 1pc2_A Mitochondria fission pr 97.0 0.0022 7.7E-08 57.4 8.7 87 899-989 15-106 (152)
213 3qww_A SET and MYND domain-con 97.0 0.0018 6.2E-08 70.9 9.7 95 826-947 310-410 (433)
214 3qwp_A SET and MYND domain-con 97.0 0.0059 2E-07 67.0 13.4 97 821-947 294-399 (429)
215 3bee_A Putative YFRE protein; 96.9 0.0033 1.1E-07 51.8 8.3 64 881-947 5-71 (93)
216 3bee_A Putative YFRE protein; 96.7 0.0054 1.8E-07 50.5 8.2 68 917-986 4-75 (93)
217 3ly7_A Transcriptional activat 96.6 0.016 5.6E-07 60.5 12.7 77 881-963 276-352 (372)
218 2kc7_A BFR218_protein; tetratr 96.5 0.0069 2.4E-07 50.6 7.7 63 924-988 5-69 (99)
219 3ly7_A Transcriptional activat 96.4 0.055 1.9E-06 56.6 14.9 69 811-914 274-342 (372)
220 2v5f_A Prolyl 4-hydroxylase su 96.2 0.025 8.6E-07 47.8 9.4 75 884-960 7-86 (104)
221 3mkq_A Coatomer beta'-subunit; 96.1 0.23 7.8E-06 60.1 21.3 76 713-806 633-708 (814)
222 3mkq_A Coatomer beta'-subunit; 96.1 0.32 1.1E-05 58.9 22.4 154 209-398 608-762 (814)
223 1nzn_A CGI-135 protein, fissio 95.9 0.035 1.2E-06 47.7 8.7 91 896-990 15-110 (126)
224 1pc2_A Mitochondria fission pr 95.5 0.066 2.2E-06 48.0 9.4 70 880-953 30-103 (152)
225 2v5f_A Prolyl 4-hydroxylase su 95.2 0.066 2.3E-06 45.1 8.2 69 918-986 4-78 (104)
226 3mkq_B Coatomer subunit alpha; 95.1 1.2 4.2E-05 40.9 16.6 127 789-980 15-141 (177)
227 3u64_A Protein TP_0956; tetrat 95.1 0.048 1.6E-06 54.5 7.8 62 884-947 201-268 (301)
228 3o48_A Mitochondria fission 1 95.0 0.17 5.7E-06 43.7 9.8 72 917-990 38-114 (134)
229 3u64_A Protein TP_0956; tetrat 95.0 0.12 4.2E-06 51.6 10.4 67 918-986 198-272 (301)
230 1y8m_A FIS1; mitochondria, unk 94.8 0.23 7.7E-06 43.4 10.4 72 917-990 37-113 (144)
231 3ffl_A Anaphase-promoting comp 94.8 0.17 5.8E-06 45.6 9.9 106 877-982 13-150 (167)
232 4ady_A RPN2, 26S proteasome re 94.8 8.8 0.0003 45.5 45.3 190 643-838 415-618 (963)
233 3mkq_B Coatomer subunit alpha; 94.7 1 3.4E-05 41.4 15.0 86 881-978 33-126 (177)
234 1wy6_A Hypothetical protein ST 94.6 1.9 6.7E-05 37.0 14.9 140 650-811 18-157 (172)
235 4ady_A RPN2, 26S proteasome re 93.3 17 0.00058 43.1 46.0 258 493-772 384-657 (963)
236 3lvg_A Clathrin heavy chain 1; 92.9 0.00052 1.8E-08 72.7 -11.5 264 270-608 54-324 (624)
237 1nzn_A CGI-135 protein, fissio 92.6 1.1 3.9E-05 38.4 10.6 70 880-953 33-106 (126)
238 4gns_B Protein CSD3, chitin bi 92.1 1.1 3.7E-05 52.1 13.2 50 929-980 347-397 (754)
239 1qsa_A Protein (soluble lytic 91.8 21 0.00072 40.5 25.0 84 883-982 320-409 (618)
240 3lvg_A Clathrin heavy chain 1; 91.6 0.00082 2.8E-08 71.2 -11.9 223 166-421 55-277 (624)
241 4b4t_P 26S proteasome regulato 91.4 8.4 0.00029 42.0 19.0 175 782-986 140-327 (445)
242 3ffl_A Anaphase-promoting comp 91.4 1.1 3.6E-05 40.5 9.4 128 808-964 12-165 (167)
243 2ff4_A Probable regulatory pro 91.0 6 0.00021 42.3 17.1 77 885-964 174-255 (388)
244 3hl4_A Choline-phosphate cytid 90.9 0.0082 2.8E-07 57.7 -5.0 60 17-85 86-145 (236)
245 4h7y_A Dual specificity protei 90.8 1.8 6.1E-05 38.2 9.9 104 672-777 11-127 (161)
246 4b4t_P 26S proteasome regulato 90.3 13 0.00044 40.6 19.2 98 885-982 140-246 (445)
247 4gns_B Protein CSD3, chitin bi 89.2 5.3 0.00018 46.4 15.3 57 886-945 341-397 (754)
248 1wy6_A Hypothetical protein ST 89.0 10 0.00036 32.6 16.5 32 673-704 124-155 (172)
249 4h7y_A Dual specificity protei 88.0 5 0.00017 35.4 10.6 111 300-412 11-134 (161)
250 2wpv_A GET4, UPF0363 protein Y 87.9 25 0.00087 35.7 19.3 127 471-616 80-216 (312)
251 1qsa_A Protein (soluble lytic 87.6 43 0.0015 38.0 33.7 122 486-617 10-131 (618)
252 3o48_A Mitochondria fission 1 86.3 4.2 0.00014 35.0 9.1 71 879-953 37-110 (134)
253 1y8m_A FIS1; mitochondria, unk 83.8 7.9 0.00027 33.9 9.8 71 879-953 36-109 (144)
254 2p58_C Putative type III secre 82.9 11 0.00039 30.2 9.3 85 250-340 22-106 (116)
255 3txn_A 26S proteasome regulato 82.8 15 0.00051 39.0 13.7 94 887-980 104-207 (394)
256 1zbp_A Hypothetical protein VP 82.7 23 0.00077 34.9 13.7 55 787-843 5-60 (273)
257 2ff4_A Probable regulatory pro 80.8 9 0.00031 40.9 11.5 72 747-819 174-250 (388)
258 2uwj_G Type III export protein 80.6 11 0.00037 30.2 8.5 85 250-340 21-105 (115)
259 1zbp_A Hypothetical protein VP 80.5 4.3 0.00015 40.0 7.8 110 863-983 13-129 (273)
260 3lpz_A GET4 (YOR164C homolog); 80.2 56 0.0019 33.5 22.2 84 514-616 132-215 (336)
261 4fhn_B Nucleoporin NUP120; pro 77.6 40 0.0014 41.9 17.5 170 642-833 815-990 (1139)
262 4b4t_R RPN7, 26S proteasome re 77.5 4.7 0.00016 43.9 8.0 98 883-980 132-234 (429)
263 4fhn_B Nucleoporin NUP120; pro 75.0 40 0.0014 41.9 16.4 143 275-422 817-986 (1139)
264 3elb_A Ethanolamine-phosphate 74.5 0.11 3.7E-06 53.9 -5.7 59 18-85 209-269 (341)
265 2wpv_A GET4, UPF0363 protein Y 71.6 91 0.0031 31.6 21.8 80 881-981 133-215 (312)
266 2p58_C Putative type III secre 70.5 34 0.0012 27.5 8.8 78 498-583 22-99 (116)
267 1v54_E Cytochrome C oxidase po 66.9 17 0.00059 29.4 6.6 45 798-842 29-73 (109)
268 2uwj_G Type III export protein 66.2 33 0.0011 27.6 7.9 78 498-583 21-98 (115)
269 1v54_E Cytochrome C oxidase po 64.9 29 0.001 28.1 7.5 61 863-926 26-86 (109)
270 4b4t_R RPN7, 26S proteasome re 52.0 98 0.0033 33.3 12.1 63 640-702 132-196 (429)
271 2y69_E Cytochrome C oxidase su 51.8 98 0.0033 26.7 8.9 49 689-737 68-116 (152)
272 2y69_E Cytochrome C oxidase su 50.5 73 0.0025 27.4 8.0 61 863-926 69-129 (152)
273 4b4t_S RPN3, 26S proteasome re 47.9 48 0.0016 36.3 8.5 71 814-914 231-302 (523)
274 1wdy_A 2-5A-dependent ribonucl 47.7 71 0.0024 31.5 9.8 19 462-480 193-211 (285)
275 3elb_A Ethanolamine-phosphate 46.5 0.94 3.2E-05 46.9 -4.8 56 17-83 17-72 (341)
276 3esl_A Checkpoint serine/threo 44.6 1.4E+02 0.0047 27.9 9.9 56 757-812 92-148 (202)
277 4b4t_S RPN3, 26S proteasome re 41.8 86 0.0029 34.3 9.3 15 389-403 417-431 (523)
278 3eiq_C Programmed cell death p 39.5 1.3E+02 0.0044 31.2 9.9 68 642-710 220-289 (358)
279 3esl_A Checkpoint serine/threo 38.4 2E+02 0.007 26.7 10.0 55 351-405 93-148 (202)
280 1k1a_A B-cell lymphoma 3-encod 38.2 1E+02 0.0035 29.4 8.9 180 210-406 16-210 (241)
281 1wdy_A 2-5A-dependent ribonucl 37.9 2.2E+02 0.0077 27.6 11.8 23 383-405 190-212 (285)
282 1ya0_A SMG-7 transcript varian 37.8 73 0.0025 34.9 8.2 79 884-966 154-232 (497)
283 4g8k_A 2-5A-dependent ribonucl 34.4 2.9E+02 0.0099 28.0 12.2 16 379-394 172-187 (337)
284 3kae_A CDC27, possible protein 33.0 2.7E+02 0.0094 25.0 14.1 100 884-987 116-241 (242)
285 2zu6_B Programmed cell death p 32.8 23 0.00078 36.0 2.9 23 488-510 171-193 (307)
286 3twr_A Tankyrase-2; ankyrin re 32.2 85 0.0029 27.8 6.7 55 344-406 79-135 (165)
287 2r9g_A AAA ATPase, central reg 32.0 2.9E+02 0.0098 25.7 9.6 58 313-371 25-87 (204)
288 3eu9_A Huntingtin-interacting 31.6 60 0.0021 31.0 5.9 11 525-535 181-191 (240)
289 1ya0_A SMG-7 transcript varian 31.6 2E+02 0.0067 31.5 10.3 65 862-931 167-232 (497)
290 3eiq_C Programmed cell death p 31.3 4.3E+02 0.015 27.2 12.3 69 304-373 219-289 (358)
291 3kea_A K1L; tropism, ANK repea 30.7 1.2E+02 0.0039 30.3 8.0 62 489-555 164-225 (285)
292 4a1g_A Mitotic checkpoint seri 30.7 2.4E+02 0.0081 25.0 8.7 61 901-966 84-144 (152)
293 3kea_A K1L; tropism, ANK repea 30.2 83 0.0028 31.4 6.8 122 277-408 99-224 (285)
294 2ynq_A ESSB; membrane protein, 30.2 1.1E+02 0.0037 27.2 6.2 22 958-979 77-98 (161)
295 2d2s_A Exocyst complex compone 29.5 1.5E+02 0.0051 28.6 8.0 22 207-228 25-46 (235)
296 2wvi_A Mitotic checkpoint seri 27.9 1.4E+02 0.0046 26.9 6.7 51 356-406 79-130 (164)
297 2r9g_A AAA ATPase, central reg 27.7 3.4E+02 0.012 25.2 9.3 71 531-602 27-102 (204)
298 3ctd_A Putative ATPase, AAA fa 26.7 3.2E+02 0.011 25.6 9.0 63 307-369 37-107 (213)
299 1oyz_A Hypothetical protein YI 26.2 4.6E+02 0.016 25.5 19.5 241 162-417 34-277 (280)
300 3bge_A Predicted ATPase; struc 26.1 2.6E+02 0.0088 25.9 8.2 39 313-351 18-56 (201)
301 3lpz_A GET4 (YOR164C homolog); 25.7 5.4E+02 0.019 26.2 30.1 26 707-732 134-159 (336)
302 1bpo_A Protein (clathrin); cla 25.5 4.9E+02 0.017 27.9 11.3 113 722-839 342-454 (494)
303 2nsz_A Programmed cell death p 25.1 1.9E+02 0.0066 24.6 7.1 24 522-545 11-34 (129)
304 3ltm_A Alpha-REP4; protein eng 24.8 4.1E+02 0.014 24.4 17.6 16 517-532 32-47 (211)
305 3txn_A 26S proteasome regulato 24.8 6.2E+02 0.021 26.5 29.8 166 641-807 21-209 (394)
306 2nsz_A Programmed cell death p 24.7 3.2E+02 0.011 23.2 9.1 66 642-708 10-77 (129)
307 1n11_A Ankyrin; clathrin, BAND 24.5 1.9E+02 0.0064 30.9 8.9 329 220-577 27-365 (437)
308 1k1a_A B-cell lymphoma 3-encod 24.4 1.8E+02 0.0061 27.6 7.9 156 241-406 12-177 (241)
309 2o8p_A 14-3-3 domain containin 24.3 4.6E+02 0.016 24.9 16.2 54 894-947 137-196 (227)
310 3utm_A Tankyrase-1; tankyrase, 23.9 2.5E+02 0.0084 28.5 9.4 77 469-553 228-308 (351)
311 2d2s_A Exocyst complex compone 23.4 3.7E+02 0.013 25.8 9.5 28 778-805 90-117 (235)
312 3aji_A 26S proteasome non-ATPa 23.1 3.6E+02 0.012 25.1 9.9 116 277-406 77-199 (231)
313 2wvi_A Mitotic checkpoint seri 22.7 3.6E+02 0.012 24.1 8.5 53 899-952 77-129 (164)
314 3bu8_A Telomeric repeat-bindin 22.3 4.9E+02 0.017 24.4 11.4 20 492-511 123-142 (235)
315 3jxi_A Vanilloid receptor-rela 22.0 1.6E+02 0.0055 28.5 7.1 93 310-406 10-120 (260)
316 3b7b_A Euchromatic histone-lys 21.8 2.3E+02 0.0079 26.7 8.1 17 494-510 218-234 (237)
317 2w2u_A Hypothetical P60 katani 21.3 88 0.003 24.3 3.7 15 932-946 32-46 (83)
318 2ion_A PDCD4, programmed cell 21.1 3E+02 0.01 24.2 7.7 95 642-737 12-112 (152)
319 2br9_A 14-3-3E, 14-3-3 protein 21.1 5.5E+02 0.019 24.5 13.4 19 929-947 183-201 (234)
320 4gq2_M Nucleoporin NUP120; bet 21.1 4.5E+02 0.015 31.6 11.8 83 885-968 843-950 (950)
321 3ltm_A Alpha-REP4; protein eng 21.0 4.8E+02 0.017 23.9 17.8 92 466-568 19-110 (211)
322 4aez_C MAD3, mitotic spindle c 20.5 1.7E+02 0.0059 27.8 6.2 52 354-405 131-183 (223)
323 3jxi_A Vanilloid receptor-rela 20.5 84 0.0029 30.6 4.5 86 210-295 12-115 (260)
324 3hra_A Ankyrin repeat family p 20.2 2.5E+02 0.0087 25.5 7.8 19 277-295 76-94 (201)
325 2v6y_A AAA family ATPase, P60 20.0 96 0.0033 24.1 3.7 17 931-947 23-39 (83)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-38 Score=376.47 Aligned_cols=472 Identities=10% Similarity=-0.044 Sum_probs=304.7
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHH
Q 001911 281 CKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVL 360 (997)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 360 (997)
.+.|.+..+...+...+ .+++..|+.++..+.+.|++++|+.+|++|... .||..++..++.+|.+.|++++|..++
T Consensus 64 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS-LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccCccCCCCCccccch-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34555555666655533 468889999999999999999999999999854 578899999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHH
Q 001911 361 SMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEML 440 (997)
Q Consensus 361 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~ 440 (997)
+.+... ++++.+++.++.+|++.|++++|.++|+++. |+... ..+..
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~----~~~~~---------------------- 187 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRKD----EKNAN---------------------- 187 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC---------------------------------
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Ccccc----ccccc----------------------
Confidence 988654 6789999999999999999999999998532 22100 00000
Q ss_pred HcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001911 441 NAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYT 520 (997)
Q Consensus 441 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 520 (997)
+.+. ...|..++..+|+.++.+|.+.|++++|.+.|++|.+.++. +...
T Consensus 188 -------------------~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 188 -------------------KLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp ----------------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred -------------------cccc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHH
Confidence 0000 11234456667777777777777777777777777765432 4555
Q ss_pred HHHHHHHHHHcCCHHHHH--HH-HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 521 YTILIDNFCKAGLIEQAR--NW-FDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDG 597 (997)
Q Consensus 521 ~~~li~~~~~~g~~~~A~--~~-~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 597 (997)
+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 555554443332222211 11 444444444445556666677777777788888888777654 4677777777888
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 001911 598 HCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVY 677 (997)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 677 (997)
|.+.|++++|..+|+++.... +.+..+++.++.+|.+.|++++|.++++++.... +.+..+|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-----------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-----------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 888888888888887776543 4466677777777777777777777777777554 5567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001911 678 DALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV 757 (997)
Q Consensus 678 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 757 (997)
+.++..|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 77777777777777777777777765432 55566666666666777777777766666543 33556666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHH
Q 001911 758 GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAPN--FVTYRVLINHCCASGLLD 831 (997)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~ 831 (997)
|++++|.++|+++.+... .+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|+++
T Consensus 455 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp TCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 666666666666665422 25566666666666666666666666666543 33444 445555555555555555
Q ss_pred HHHHHHHHHHh
Q 001911 832 EAHNLLEEMKQ 842 (997)
Q Consensus 832 ~A~~~~~~m~~ 842 (997)
+|..+++++.+
T Consensus 534 ~A~~~~~~~~~ 544 (597)
T 2xpi_A 534 AAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-37 Score=366.22 Aligned_cols=523 Identities=10% Similarity=-0.007 Sum_probs=313.5
Q ss_pred HHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHH
Q 001911 175 MECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADRLDTA 254 (997)
Q Consensus 175 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 254 (997)
+...+....+...+..++. .....|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.++.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHH
Confidence 3444555555555544432 2234577777777777888888877777764 346667777777777777777777
Q ss_pred HHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 001911 255 YLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCI 334 (997)
Q Consensus 255 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 334 (997)
..+|+.+... +++..+++.++.+|++.|++++|+++|++ +.
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------------------------------~~----- 177 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGE--------------------------------TN----- 177 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCS--------------------------------SC-----
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhc--------------------------------cC-----
Confidence 7777766432 34444555555555555555555555543 11
Q ss_pred CcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 001911 335 PNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPG-YVVYNIL 413 (997)
Q Consensus 335 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 413 (997)
|+.. ...++.+.++. ..|.+++..+|+.++.+|.+.|++++|.++|++|.+.+ |+ ...+..+
T Consensus 178 ~~~~----~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 240 (597)
T 2xpi_A 178 PFRK----DEKNANKLLMQ-----------DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQL 240 (597)
T ss_dssp TTC--------------CC-----------CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred Cccc----ccccccccccc-----------ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHH
Confidence 1100 00001111111 12344556666677777777777777777777766543 33 3333333
Q ss_pred HHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHH-HHHHHHCCCCCCHhhHHHHHHH
Q 001911 414 IGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNV-IREMMSKGFIPDTSTYSKVIGY 492 (997)
Q Consensus 414 i~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~l-l~~m~~~g~~p~~~~~~~li~~ 492 (997)
...+...+. +..+.+..+ +..+...+..+...+|+.++..
T Consensus 241 ~~~~~~~~~---------------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 241 VSNHLLTAD---------------------------------------EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHTTCSCHH---------------------------------------HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHhhcccch---------------------------------------hHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 333221100 000111111 2223332223333445555666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 001911 493 LCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQA 572 (997)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A 572 (997)
|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|+.+|+++.+.+.. +..+++.++.++.+.|++++|
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 358 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKL 358 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHH
T ss_pred HcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHH
Confidence 66666677777777666544 356677777777777777777777777777665433 566677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhc
Q 001911 573 NELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKV 652 (997)
Q Consensus 573 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 652 (997)
.++++++.+.. +.+..+++.++..|.+.|++++|.++|+++.... +.+..+|+.++.+|.+.
T Consensus 359 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 359 YLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-----------------PQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp HHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHc
Confidence 77777776543 4456667777777777777777777777766532 44556777777777777
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 001911 653 HKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVI 732 (997)
Q Consensus 653 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 732 (997)
|++++|.++|+++...+ +.+..+|+.++.+|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|.++|
T Consensus 421 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp TCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777777777776654 456677777777777777777777777777766533 6677777777777777777777777
Q ss_pred HHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001911 733 SKMLED----SYAPN--VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS 806 (997)
Q Consensus 733 ~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 806 (997)
+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++.
T Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777654 44565 6677888888888888888888888877754 3367778888888888888888888888887
Q ss_pred hCCCCC-CHHHHHHHHHHH
Q 001911 807 SKGCAP-NFVTYRVLINHC 824 (997)
Q Consensus 807 ~~g~~p-~~~~~~~l~~~~ 824 (997)
+. .| +...+..+..+|
T Consensus 578 ~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 578 AI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HH--CTTCHHHHHHHHHTT
T ss_pred hc--CCCChHHHHHHHHHH
Confidence 75 45 456666665554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1e-26 Score=259.76 Aligned_cols=382 Identities=16% Similarity=0.112 Sum_probs=314.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001911 524 LIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGD 603 (997)
Q Consensus 524 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 603 (997)
+...+.+.|++++|++.+.++.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 345566778888888888887776432 45566667777778888888888888777654 5577788888888888888
Q ss_pred HHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 001911 604 IERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDG 683 (997)
Q Consensus 604 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 683 (997)
+++|...|+++.... +.+...|..+..++.+.|++++|.+.|+++.... +.+...+..+...
T Consensus 83 ~~~A~~~~~~al~~~-----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-----------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 888888888887642 4455678888888888888888888888888765 4455667778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 684 FCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEA 763 (997)
Q Consensus 684 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 763 (997)
+...|++++|...|+++.+..+. +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 88889999999999988887543 67788888888999999999999999988764 34567888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 764 YKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 764 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
...++++.+... .+..++..+...+...|++++|++.|+++.+. .| +..+|..++.++.+.|++++|...++++.+
T Consensus 223 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 223 VAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999887633 26788899999999999999999999999986 45 578899999999999999999999999876
Q ss_pred cCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhH
Q 001911 843 TYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNST 922 (997)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 922 (997)
.. +++...+..++..+...|++++|++.++++.+..|. +..++
T Consensus 300 ~~----------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 342 (388)
T 1w3b_A 300 LC----------------------------------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAH 342 (388)
T ss_dssp HC----------------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT---CHHHH
T ss_pred hC----------------------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHH
Confidence 43 345567888999999999999999999999988765 78899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 001911 923 LLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 923 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~ 969 (997)
..++.++...|++++|+..|+++++ ..|+ ..++..++.+|.+.|+
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999998 6786 8899999999888764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.4e-25 Score=250.54 Aligned_cols=379 Identities=16% Similarity=0.086 Sum_probs=237.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 001911 493 LCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQA 572 (997)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A 572 (997)
+.+.|++++|...++.+.+..+ .+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 3444555555555555444321 134444445555555555555555555555442 22445555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhc
Q 001911 573 NELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKV 652 (997)
Q Consensus 573 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 652 (997)
.+.|+++.+.. +.+..+|..+..++...|++++|...|+++.... +.+...+..+...+...
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-----------------PDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-----------------TTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCcHHHHHHHHHHHHHc
Confidence 55555555442 2334455555666666666666666666555432 23334455555566666
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 001911 653 HKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVI 732 (997)
Q Consensus 653 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 732 (997)
|++++|.+.|+++.... +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+
T Consensus 149 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666553 344566666677777777777777777777666533 4556666667777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 001911 733 SKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP 812 (997)
Q Consensus 733 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 812 (997)
++..+.. +.+..++..+...|.+.|++++|.+.|+++.+.... +..+|..+...+.+.|++++|++.|+++.+.. +.
T Consensus 227 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 303 (388)
T 1w3b_A 227 LRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT 303 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc
Confidence 7766543 234566777777777777777777777777765322 56677777777777777777777777777652 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+..++..+..++...|++++|...++++.+.. +.+...+..++.+|
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVF----------------------------------PEFAAAHSNLASVL 349 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC----------------------------------TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------------------CCcHHHHHHHHHHH
Confidence 67777777777788888888887777776532 22345677777888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR 933 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 933 (997)
.+.|++++|++.++++.+..|. +..++..++..+...|
T Consensus 350 ~~~g~~~~A~~~~~~a~~~~p~---~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRISPT---FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhhCCC---CHHHHHhHHHHHHHcc
Confidence 8888888888888888777664 6677777777666554
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.1e-27 Score=271.22 Aligned_cols=204 Identities=19% Similarity=0.248 Sum_probs=172.9
Q ss_pred HHHHHHHHhccCchh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---------hhH
Q 001911 184 PEQFLREIGNEDKEV-LGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVFLRADR---------LDT 253 (997)
Q Consensus 184 a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~ 253 (997)
++.+.+++.+.+... ...+++.+|.+|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 334445554443222 2246888899999999999999999999999999999999999999987664 577
Q ss_pred HHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 001911 254 AYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSC 333 (997)
Q Consensus 254 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 333 (997)
|..+|++|.+.|+ .||.++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 89 A~~lf~~M~~~G~--------------------------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 89 GFDIFKQMIVDKV--------------------------------VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI 136 (501)
T ss_dssp HHHHHHHHHHTTC--------------------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC--------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 8888888888775 78899999999999999999999999999999999
Q ss_pred CCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001911 334 IPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNIL 413 (997)
Q Consensus 334 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 413 (997)
.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..||+++
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q 001911 414 IGGICG 419 (997)
Q Consensus 414 i~~~~~ 419 (997)
+..|+.
T Consensus 217 ~~~F~s 222 (501)
T 4g26_A 217 EEWFKS 222 (501)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 998875
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.2e-27 Score=268.68 Aligned_cols=215 Identities=16% Similarity=0.257 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHH
Q 001911 355 RCKRVLSMMITEGCYPSP-RIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAE 433 (997)
Q Consensus 355 ~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~ 433 (997)
.+..+...+.+.+..+.+ .+++.+|++|++.|++++|+++|++|.+.|+.||.+|||+||.+++..+....
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~-------- 79 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE-------- 79 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS--------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh--------
Confidence 344555666666666554 45888999999999999999999999999999999999999999876554211
Q ss_pred HHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001911 434 KAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNG 513 (997)
Q Consensus 434 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 513 (997)
..+.+.+++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|
T Consensus 80 ------------------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g 135 (501)
T 4g26_A 80 ------------------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG 135 (501)
T ss_dssp ------------------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred ------------------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 12456689999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 001911 514 LIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTA 593 (997)
Q Consensus 514 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 593 (997)
+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.
T Consensus 136 ~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~ 215 (501)
T 4g26_A 136 IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM 215 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 001911 594 LIDGHCKA 601 (997)
Q Consensus 594 li~~~~~~ 601 (997)
++..++..
T Consensus 216 l~~~F~s~ 223 (501)
T 4g26_A 216 IEEWFKSE 223 (501)
T ss_dssp HHHHHHSH
T ss_pred HHHHHhcC
Confidence 99988763
No 7
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.92 E-value=9.2e-19 Score=207.46 Aligned_cols=614 Identities=16% Similarity=0.166 Sum_probs=389.8
Q ss_pred CChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHH---------------------
Q 001911 143 KKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGK--------------------- 201 (997)
Q Consensus 143 ~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~--------------------- 201 (997)
.+|+.|..|-.-+....+ .....+.+++++...+..+++..++-++-+.+.+....
T Consensus 524 ~~P~~~~~fa~~L~~~~~---p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail 600 (1630)
T 1xi4_A 524 ISPDQGQQFAQMLVQDEE---PLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL 600 (1630)
T ss_pred cChHHHHHHHHHHhcCCC---CccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHH
Confidence 467777777666655533 23346778888888888888888887765544321000
Q ss_pred --------HHHHHHHHHHHcCChHHHHHHHHHHHhC--------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 001911 202 --------LLNVLIHKCCRNGFWNVALEELGRLKDF--------GYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDA- 264 (997)
Q Consensus 202 --------~~~~li~~y~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~- 264 (997)
=+..+...|-++|.++.|++.+..+.+. .+.|+ .|..-+ ..=..+.+...+++|...
T Consensus 601 ~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~-----~l~~~f-g~l~~~~s~~~l~~~l~~n 674 (1630)
T 1xi4_A 601 GNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPE-----WLVNYF-GSLSVEDSLECLRAMLSAN 674 (1630)
T ss_pred hcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHH-----HHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 1567778899999999999988754321 12221 111111 112234444444444421
Q ss_pred ---------------------------------------------CCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 001911 265 ---------------------------------------------GFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFV 299 (997)
Q Consensus 265 ---------------------------------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 299 (997)
.+..|+.+..-.|.+.++.|++.|.+++.++..+.
T Consensus 675 ~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y 754 (1630)
T 1xi4_A 675 IRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCY 754 (1630)
T ss_pred HhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCC
Confidence 23457777888899999999999988876542111
Q ss_pred C------------------------------CHHHH------HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHH-----
Q 001911 300 P------------------------------DTVLY------TKMISGLCEASLFEEAMDLLNRMRARSCIPNVV----- 338 (997)
Q Consensus 300 p------------------------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----- 338 (997)
. +.+.| ...|.+|.+.-++..+=.+...+.+..|..|..
T Consensus 755 ~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~ 834 (1630)
T 1xi4_A 755 DPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLIL 834 (1630)
T ss_pred CHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHH
Confidence 1 11111 123444444444444434443343333332221
Q ss_pred ------hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHCC
Q 001911 339 ------TFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAY----------KLLSKMRKCG 402 (997)
Q Consensus 339 ------t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~----------~~~~~m~~~g 402 (997)
...-|+..+-+.+++.--..+++.-...| ..++.++|+|+..|...++-.+.. -+=+-..++
T Consensus 835 ~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~r- 912 (1630)
T 1xi4_A 835 VVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKR- 912 (1630)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhc-
Confidence 12223333334444445555677777777 567888888888887544322210 000001110
Q ss_pred CCCCH--HH-------------------HHHHHHhhhcCCCCCCchHHHHHH--------HHHHHHHHcC--ccccccch
Q 001911 403 FQPGY--VV-------------------YNILIGGICGNEDLPASDVFELAE--------KAYAEMLNAG--VVLNKINV 451 (997)
Q Consensus 403 ~~p~~--~~-------------------~~~li~~~~~~~~~~~~~~~~~a~--------~~~~~m~~~g--~~~~~~~~ 451 (997)
.|.. +. |...-+-+... ...++|..++ .+.+...... -..++.-+
T Consensus 913 -Dp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r---~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeV 988 (1630)
T 1xi4_A 913 -DPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR---KDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEV 988 (1630)
T ss_pred -CcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh---cCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHh
Confidence 1110 00 00010001111 1122333322 1222111111 23455567
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001911 452 SNFVQCLCGAGKYEKAYNVIREMMSKGF--IPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFC 529 (997)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~ll~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 529 (997)
+..+++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..+........ + ..-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 7888999999999999999999984421 12334455566666665 455666655555422 2 334777788
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001911 530 KAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACR 609 (997)
Q Consensus 530 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 609 (997)
..|.+++|..+|++... .....+.++. ..+++++|.++.++. -++.+|..+..++...|++++|..
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999998631 2222333332 678999999998865 357889999999999999999999
Q ss_pred HHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 001911 610 IYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGK 689 (997)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 689 (997)
.|.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.++
T Consensus 1127 sYiKA----------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1127 SYIKA----------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHhc----------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence 99653 345567789999999999999999999877654 343344458999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001911 690 LDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLM 769 (997)
Q Consensus 690 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 769 (997)
+++...+. + .++...|..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++
T Consensus 1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88644432 2 346677778999999999999999999884 3789999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001911 770 MEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTY 844 (997)
Q Consensus 770 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 844 (997)
.. +..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++......
T Consensus 1247 A~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1247 AN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred hC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 73 678999999999999999998886554 23456677789999999999999999998876543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-22 Score=236.51 Aligned_cols=448 Identities=11% Similarity=-0.009 Sum_probs=284.2
Q ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 001911 451 VSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCK 530 (997)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 530 (997)
+......+.+.|++++|+..|++++... |+...|..+..++...|++++|...++.+.+.++ .+..++..+..++.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHH
Confidence 3445556666666666666666666653 5666666666666666666666666666665532 245566666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001911 531 AGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRI 610 (997)
Q Consensus 531 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 610 (997)
.|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 6666666666666666542 233344444444443333333333333333332222222221111111111111111111
Q ss_pred HHHHHhccCCCchhHHHHHhccCCCCC---------CceeHHHHHHHHHh---cCChHHHHHHHHHHHh-----cCC---
Q 001911 611 YARMKGNAEISDVDIYFRVLDNNCKEP---------NVYTYGALIDGLCK---VHKVREAHDLLDAMSV-----VGC--- 670 (997)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--- 670 (997)
...+ ......+ +...+......+.. .|++++|...|+++.. ..-
T Consensus 165 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 165 ASFF----------------GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp HHHH----------------TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHH----------------hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 1111 0000111 12333333344443 7889999999988877 311
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001911 671 -----EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVV 745 (997)
Q Consensus 671 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 745 (997)
+.+..++..+...+...|++++|...++++.+..+. ..++..+...+...|++++|...++++.+.. +.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 305 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSS 305 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTH
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHH
Confidence 223556777888888889999999999888887644 7778888888888899999999988888764 44667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCC 825 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~ 825 (997)
.+..+...|...|++++|...++++.+.... +...+..+...+...|++++|+..++++.+.. +.+..++..+..++.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILT 383 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHH
Confidence 7888888888889999999999888876433 56778888888888899999999988888752 225677888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC----hhhHHHHHHHHHh---cCCH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI----VPAYRILIDHYIK---AGRL 898 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~ 898 (997)
..|++++|...++++.... +. .+. ...+..++.+|.. .|++
T Consensus 384 ~~~~~~~A~~~~~~a~~~~------------------------------~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELE------------------------------NK--LDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHH------------------------------HT--SSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred HCCCHHHHHHHHHHHHHhh------------------------------hc--cchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 8899999988888876531 00 121 2377888888888 8999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
++|++.++++....|. +..++..++.++...|++++|...++++++ ..|+ ..++..+
T Consensus 432 ~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~ 489 (514)
T 2gw1_A 432 IEATNLLEKASKLDPR---SEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHHHHHH
Confidence 9999999998887765 677888888888888999999999999888 5676 3444433
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-22 Score=234.54 Aligned_cols=451 Identities=12% Similarity=0.024 Sum_probs=316.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001911 484 STYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAY 563 (997)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 563 (997)
..+......+.+.|++++|+..|+++.+.. |+..++..+..++.+.|++++|+..++++.+.++. +..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHH
Confidence 346667788899999999999999999874 68999999999999999999999999999988643 678999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC-chhH--HHHHhccCCCCCCce
Q 001911 564 LKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEIS-DVDI--YFRVLDNNCKEPNVY 640 (997)
Q Consensus 564 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~ 640 (997)
.+.|++++|...|+++...+ +++......++..+........+.+.+..+......+ .... ...........|+..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999999886 4455555555555555444444444443221111000 0000 000000011123322
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----c--CC-----
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCK---VGKLDEAQMVFSKMLE-----H--GC----- 705 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~--g~----- 705 (997)
.. ..+........... ...-+.+...+......+.. .|++++|...|+++.+ . .+
T Consensus 163 ~~----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 163 SM----ASFFGIFKPELTFA------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp HH----HHHHTTSCCCCCCS------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred HH----HHHHhhcCHHHHHH------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 22 22222222111110 01113344555555555554 8999999999999988 4 11
Q ss_pred -CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 706 -NPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTA 784 (997)
Q Consensus 706 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (997)
+.+..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+... .+...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 309 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHH
Confidence 1235678888999999999999999999999865 3388899999999999999999999999998643 36778999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhH--h
Q 001911 785 MIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSR--E 862 (997)
Q Consensus 785 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~--~ 862 (997)
+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+.. |.....+..+...+.. +
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999863 2267889999999999999999999999987653 2222222222111111 1
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh---cCCHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL---ARKIDKAF 939 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~ 939 (997)
+..|.. .+++|++.. ... +........+..++.++.. .|++++|.
T Consensus 388 ~~~A~~----------------------------~~~~a~~~~---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 388 FDKALK----------------------------QYDLAIELE---NKL-DGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHH----------------------------HHHHHHHHH---HTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHH----------------------------HHHHHHHhh---hcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 111111 223333322 221 1111235588999999999 99999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCcc
Q 001911 940 ELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINW 987 (997)
Q Consensus 940 ~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 987 (997)
..++++++ ..|+ ..++..++.+|.+.|++++|...++++.......
T Consensus 436 ~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 436 NLLEKASK--LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 99999999 5675 8899999999999999999999999998876543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.3e-21 Score=223.14 Aligned_cols=386 Identities=12% Similarity=0.055 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001911 501 KAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETML 580 (997)
Q Consensus 501 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 580 (997)
.+...+..+.... +.+...+..+...+.+.|++++|+.+|+++.+..+ .+..+|..+..++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444432 23566777777777777777777777777776533 356677777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCc---eeHHHHHHHHHhcCChHH
Q 001911 581 SKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNV---YTYGALIDGLCKVHKVRE 657 (997)
Q Consensus 581 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~ 657 (997)
+.+ +.+..++..+...+...|++++|...|+++.... +.+. ..+..++..+..
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~------ 143 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----------------PSENEEKEAQSQLIKSDEM------ 143 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----------------CCHHHHHHHHHHHHHHHHH------
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------CCChhhHHHHHHHHHHHHH------
Confidence 654 4456667777777777777777777777776542 2333 444444333110
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 658 AHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLE 737 (997)
Q Consensus 658 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 737 (997)
..+..+...+...|++++|+..|+++.+..+. +..++..++..|.+.|++++|...|+++.+
T Consensus 144 -----------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 205 (450)
T 2y4t_A 144 -----------------QRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASK 205 (450)
T ss_dssp -----------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01122233455566666666666666665432 555666666666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHhccCCHHHHHHHHHHH
Q 001911 738 DSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAM------------IDGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 738 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m 805 (997)
.. +.+..++..++..|...|++++|...|+++.+... .+...+..+ +..+.+.|++++|+..|+++
T Consensus 206 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 206 LK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 42 34456666666666666666666666666665422 133333333 77788888889998888888
Q ss_pred HhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC
Q 001911 806 SSKGCAPN-----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP 880 (997)
Q Consensus 806 ~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 880 (997)
.+. .|+ ..++..++.++.+.|++++|...++++.+.. +.
T Consensus 284 l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------------p~ 327 (450)
T 2y4t_A 284 MKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME----------------------------------PD 327 (450)
T ss_dssp HHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----------------------------------TT
T ss_pred Hhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------cc
Confidence 875 454 4477888888888999999988888876532 23
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH------------HHhcC-----CHHHHHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIES------------LSLAR-----KIDKAFELYV 943 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~ 943 (997)
+...|..++.+|...|++++|++.++++.+..|. +..++..++.+ |...| +.+++.+.|+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~ 404 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN---DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYR 404 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHH
Confidence 4567888888888999999999999998887765 66777777643 33334 5677888888
Q ss_pred H-HHHcCCCCC----H-------HHHHHHHHHHHhcCCHHHH
Q 001911 944 D-MIRKDGSPE----L-------STFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 944 ~-~~~~~~~p~----~-------~~~~~l~~~y~~~g~~~eA 973 (997)
+ ..+ ..|| . ..+..+..+|-..|+.+.+
T Consensus 405 ~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 405 KLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 7 455 4454 1 2556677777777665543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.1e-21 Score=221.51 Aligned_cols=329 Identities=16% Similarity=0.097 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001911 588 IVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSV 667 (997)
Q Consensus 588 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 667 (997)
...+..++..+.+.|++++|..+|+++.... +.+..++..+..+|...|++++|.+.|+++..
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----------------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444555555555555555555544331 33444455555555555555555555555554
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHH------------HHHHHHHhcCCHHHHHHHH
Q 001911 668 VGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNV---YTYG------------SLIDRLFKDKRLDLALKVI 732 (997)
Q Consensus 668 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~------------~li~~~~~~g~~~~A~~~~ 732 (997)
.+ +.+..++..+...|.+.|++++|...|+++.+..+. +. ..+. .+...+...|++++|+..|
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 43 334455555555555555555555555555554321 22 2333 3345588899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 001911 733 SKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP 812 (997)
Q Consensus 733 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 812 (997)
+++.+.. +.+...+..++.+|.+.|++++|.+.|+++.+.. +.+..++..++..|...|++++|+..|+++... .|
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p 242 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQ 242 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9998764 4578889999999999999999999999998763 347899999999999999999999999999975 45
Q ss_pred -CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 813 -NFVTYRVL------------INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 813 -~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
+...+..+ +..|...|++++|..+++++....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----------------------------------- 287 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----------------------------------- 287 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------------------
Confidence 45555544 889999999999999999987643
Q ss_pred CC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 001911 880 PI-----VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE- 953 (997)
Q Consensus 880 p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 953 (997)
|+ ...+..++.++.+.|++++|++.++++.+..|. +..+|..++.+|...|++++|...++++++ ..|+
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~ 362 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD---NVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNEND 362 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSC
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcch
Confidence 33 236788999999999999999999999987765 789999999999999999999999999999 7786
Q ss_pred HHHHHHHHHH------------HHhcC-----CHHHHHHHHHH
Q 001911 954 LSTFVHLIKG------------LIRVN-----KWEEALQLSYS 979 (997)
Q Consensus 954 ~~~~~~l~~~------------y~~~g-----~~~eA~~~~~~ 979 (997)
..++..++.+ |...| +.+++.+.+++
T Consensus 363 ~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 363 QQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 7888888844 55555 55666777765
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.5e-21 Score=225.24 Aligned_cols=257 Identities=13% Similarity=0.047 Sum_probs=151.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 001911 654 KVREAHDLLDAMSVVGCEPNN-------IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLD 726 (997)
Q Consensus 654 ~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 726 (997)
++++|..+++++.... +.+. .++..+...+...|++++|...++++.+.. |+..++..+...+...|+++
T Consensus 217 ~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHH
Confidence 5666666666666543 2222 234555556666666666766666666653 33556666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001911 727 LALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS 806 (997)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 806 (997)
+|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|++.++++.
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666543 334556666666666666666666666666654322 44556666666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHH
Q 001911 807 SKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYR 886 (997)
Q Consensus 807 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 886 (997)
+.. +.+...+..+..++...|++++|...++++.+... ...........+.
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE----------------------------VQEKIHVGIGPLI 422 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HCSSCSSTTHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC----------------------------cchhhHHHHHHHH
Confidence 642 22455666666666666666666666666543210 0000111122244
Q ss_pred HHHHHHHhc----------CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 887 ILIDHYIKA----------GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 887 ~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.++.+|... |++++|+..++++.+..|. +..++..++.++...|++++|.+.|+++++
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR---SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455666666 6677777777766666554 556666666666666777777777776666
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=1.2e-16 Score=189.76 Aligned_cols=608 Identities=14% Similarity=0.116 Sum_probs=401.5
Q ss_pred CCCHHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCCCChHHHHHHHH---------------hc
Q 001911 129 KLSESLVVNVLNLIKKPELGVKFFLWAGRQIGYSHTPPVYNALVEIMECDHDDRVPEQFLREI---------------GN 193 (997)
Q Consensus 129 ~l~~~~~~~vl~~~~~~~~a~~ff~w~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~---------------~~ 193 (997)
.+.+..++.++-..+..+ ..|-|++....++-|+.+....|.+.++.|+..+.+.+.++= +-
T Consensus 692 ~lg~~~li~~fe~~~~~e---gl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl 768 (1630)
T 1xi4_A 692 QLSTQSLIELFESFKSFE---GLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 768 (1630)
T ss_pred hcCHHHHHHHHHHhcchh---hHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCC
Confidence 445555555555544333 346678888889999999999999999999988887766542 11
Q ss_pred cCchhh--------------HHH----HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-----------hHHHHHHH
Q 001911 194 EDKEVL--------------GKL----LNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQA-----------IYNALIQV 244 (997)
Q Consensus 194 ~~~~~~--------------~~~----~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~ll~~ 244 (997)
.++-+. .-+ ....|..|++.-++..+=.+...+.+.++..+.. ...-|+..
T Consensus 769 ~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~ 848 (1630)
T 1xi4_A 769 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848 (1630)
T ss_pred CCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHH
Confidence 111110 000 1344556666555555555555555544333211 12334444
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 001911 245 FLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDL 324 (997)
Q Consensus 245 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 324 (997)
+-+.+++..-..+++.-+..| ..++.++|++...|...++-.|. ++.+. ..-=..++.-||...++.-|.-.
T Consensus 849 ~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~--fL~~n-----~~yd~~~vgkyce~rDp~la~ia 920 (1630)
T 1xi4_A 849 VEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER--FLREN-----PYYDSRVVGKYCEKRDPHLACVA 920 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH--Hhhcc-----CcccHHHHHHHHHhcCcchHHHH
Confidence 556666777777788888877 67889999999999987765543 22111 01111223334444444333333
Q ss_pred HHH-----------------------HHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 001911 325 LNR-----------------------MRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGC--YPSPRIFHSLI 379 (997)
Q Consensus 325 ~~~-----------------------m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li 379 (997)
+++ +.++ -|..-|..++.- +-+--.++.+......+ ..++.--...+
T Consensus 921 y~~g~~d~eli~vt~~n~l~k~~arylv~r---~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~v 992 (1630)
T 1xi4_A 921 YERGQCDLELINVCNENSLFKSLSRYLVRR---KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTV 992 (1630)
T ss_pred hcccCCcHHHHHHHhcchhHHHHHHHHHHh---cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHH
Confidence 322 0111 123333333311 11112233333332221 12333445678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchhHHHHH
Q 001911 380 HAYCRSGDYSYAYKLLSKMRKCGF--QPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVSNFVQC 457 (997)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 457 (997)
..|...|.+.+|++++++..-.+- .-+...-+.++..-.+.. ........... +......+...
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD-------~~Rv~eyI~kL-------d~~d~~eIA~I 1058 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKAD-------RTRVMEYINRL-------DNYDAPDIANI 1058 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhC-------hhhHHHHHHHh-------hhccHHHHHHH
Confidence 889999999999999999984311 122334444554433321 12222222221 22224457778
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 458 LCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQA 537 (997)
Q Consensus 458 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 537 (997)
+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 889999999999999962 11122233332 678899999998865 2578899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001911 538 RNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGN 617 (997)
Q Consensus 538 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 617 (997)
+..|.+. -|...|..++..+.+.|++++|.+.|...++.. +++...+.++.+|++.+++++..... .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9999664 378889999999999999999999999888764 33333445889999999988644332 1
Q ss_pred cCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 618 AEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVF 697 (997)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 697 (997)
.++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+
T Consensus 1192 ------------------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1192 ------------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred ------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 345566778999999999999999999985 37899999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001911 698 SKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYP 777 (997)
Q Consensus 698 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 777 (997)
++. .+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++...... +-
T Consensus 1245 rKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-ra 1312 (1630)
T 1xi4_A 1245 RKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RA 1312 (1630)
T ss_pred HHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hh
Confidence 987 367899999999999999999998776532 356677799999999999999999998887543 22
Q ss_pred CHHHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 778 NVVTYTAMIDGFGK--VGKVDKCLELLRQMSSKGCAP------NFVTYRVLINHCCASGLLDEAHNLL 837 (997)
Q Consensus 778 ~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~~~~ 837 (997)
....|+-|...|.+ -++..+++++|..-.+ ++| +...|.-++..|.+.|+++.|...+
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34456555555554 4667777777765443 233 5778999999999999999998544
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.1e-20 Score=220.99 Aligned_cols=421 Identities=14% Similarity=0.041 Sum_probs=273.5
Q ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 001911 451 VSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCK 530 (997)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 530 (997)
+......+.+.|++++|++.|++++... +.+...+..+..++...|++++|+..++++.+.++ .+..++..+..++..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH
Confidence 4456677889999999999999998864 45677888889999999999999999999988753 378889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCCCHHHHHHHH---------
Q 001911 531 AGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSK------GCIPNIVTFTALI--------- 595 (997)
Q Consensus 531 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~li--------- 595 (997)
.|++++|+..|+.+ .. .|+ .....+..+...+...+|...++.+... ...|+........
T Consensus 106 ~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 99999999999633 32 222 2222344555566667888888887553 1223333222111
Q ss_pred -----------------HHHHH-----cCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCC--------ceeHHHH
Q 001911 596 -----------------DGHCK-----AGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPN--------VYTYGAL 645 (997)
Q Consensus 596 -----------------~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l 645 (997)
..+.. .+++..+...+.+... .+.+... ..|+ ..++..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~--------~~~~~l~---~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD--------MYHSLLS---ANTVDDPLRENAALALCYT 249 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH--------HHHHHHC-----CCCHHHHHHHHHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------HHHHHHH---HCCCcchhhHHHHHHHHHH
Confidence 11111 1333444444444432 2222222 2232 2245566
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 001911 646 IDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRL 725 (997)
Q Consensus 646 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 725 (997)
...+...|++++|.+.++++.... |+..++..+...+...|++++|...++++.+..+. +..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCH
Confidence 667778888888888888888764 45777888888888888888888888888887643 677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001911 726 DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 805 (997)
++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|++.|+++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88888888887754 3356678888888888888888888888888763 335667788888888888888888888887
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhh
Q 001911 806 SSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPA 884 (997)
Q Consensus 806 ~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 884 (997)
.+.. |+ ...+..+... ...|.-+. ...... .......++..|...+.+..... +.+...
T Consensus 405 ~~~~--~~~~~~~~~~~~~------~~~a~~~~-~~~~~~----------~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~ 464 (537)
T 3fp2_A 405 KRLE--EVQEKIHVGIGPL------IGKATILA-RQSSQD----------PTQLDEEKFNAAIKLLTKACELD-PRSEQA 464 (537)
T ss_dssp HHHH--HHCSSCSSTTHHH------HHHHHHHH-HHHTC--------------CCHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHcC--CcchhhHHHHHHH------HHHHHHHH-HHhhcc----------chhhhHhHHHHHHHHHHHHHHhC-CCCHHH
Confidence 7642 21 1111111100 00011111 110000 00000135666777777765443 234557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 914 (997)
+..++.+|...|++++|.+.++++.+..|.
T Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 788888888888888888888888877654
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.5e-18 Score=191.03 Aligned_cols=320 Identities=15% Similarity=0.101 Sum_probs=240.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHH
Q 001911 587 NIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMS 666 (997)
Q Consensus 587 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 666 (997)
++..+..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 64 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-----------------PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 64 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34566777788888888888888888887653 4566778888888888999999999998888
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHhHHHH------------HHHHHhcCCHHHHHHHH
Q 001911 667 VVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN--PNVYTYGSL------------IDRLFKDKRLDLALKVI 732 (997)
Q Consensus 667 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~A~~~~ 732 (997)
... +.+...+..+...+...|++++|...++++.+..+. .+...+..+ ...+...|++++|...+
T Consensus 65 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 65 ALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 765 456778888888888899999999999988886431 133344443 46777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 001911 733 SKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP 812 (997)
Q Consensus 733 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 812 (997)
+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++..+. .|
T Consensus 144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~ 219 (359)
T 3ieg_A 144 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQ 219 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cc
Confidence 8887753 4566778888888888888888888888888763 336778888888888888888888888888875 34
Q ss_pred -CHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 813 -NFVTYR------------VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 813 -~~~~~~------------~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
+...+. .+...+...|++++|...++++....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------------------- 264 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----------------------------------- 264 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------------------
Confidence 333332 23566778888888888888776543
Q ss_pred CCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 001911 880 PIV-----PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE- 953 (997)
Q Consensus 880 p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 953 (997)
|+. ..+..++.+|...|++++|++.++++.+..|. +..++..++.++...|++++|...|+++++ ..|+
T Consensus 265 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 339 (359)
T 3ieg_A 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD---NVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNEND 339 (359)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 221 23556778888888888888888888877654 677888888888888888888888888888 6675
Q ss_pred HHHHHHHHHHHHhcC
Q 001911 954 LSTFVHLIKGLIRVN 968 (997)
Q Consensus 954 ~~~~~~l~~~y~~~g 968 (997)
..++..|..++...+
T Consensus 340 ~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 340 QQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 667777777765443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=3.7e-18 Score=187.77 Aligned_cols=317 Identities=15% Similarity=0.065 Sum_probs=260.8
Q ss_pred ceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 001911 639 VYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDR 718 (997)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 718 (997)
+..+..+...+...|++++|...|+++.... +.+..++..+...+...|++++|...++++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3456778888999999999999999999876 567889999999999999999999999999998644 67889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001911 719 LFKDKRLDLALKVISKMLEDSYA---PNVVIYTEM------------IDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYT 783 (997)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 783 (997)
+...|++++|...++++.+.. + .+...+..+ ...+...|++++|.+.++++.+... .+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 999999999999999999864 2 244455554 5788999999999999999998743 4788899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhH
Q 001911 784 AMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREF 863 (997)
Q Consensus 784 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 863 (997)
.+...+...|++++|+..++++.+.. +.+..++..+..++...|++++|...+++..+.. |.....+....
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~------- 229 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK------- 229 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH-------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHH-------
Confidence 99999999999999999999999863 3378899999999999999999999999987653 22111111000
Q ss_pred HHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcch----hhHHHHHHHHHhcCCHHHHH
Q 001911 864 IVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASR----NSTLLLIESLSLARKIDKAF 939 (997)
Q Consensus 864 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 939 (997)
.+ ........++..+...|++++|++.++++.+..|. +. ..+..++.++...|++++|+
T Consensus 230 --------~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 230 --------QV------KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS---VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp --------HH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------HH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 00 01112334578899999999999999999987764 33 34667889999999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCcc
Q 001911 940 ELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICHTDINW 987 (997)
Q Consensus 940 ~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 987 (997)
..++++++ ..| +..++..++.+|...|++++|...++++.+.....
T Consensus 293 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 293 RICSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 99999999 567 48899999999999999999999999998876543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=1.7e-16 Score=182.46 Aligned_cols=380 Identities=12% Similarity=0.027 Sum_probs=270.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 001911 503 FLLFQEMKRNGLIPDVYTYTILIDNFCK----AGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLK----ARKPSQANE 574 (997)
Q Consensus 503 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~ 574 (997)
...+....+. .+...+..+...|.. .+++++|+.+|++..+.| +...+..|...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3444444443 255666666666666 677777777777777653 55666667777776 677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHH
Q 001911 575 LFETMLSKGCIPNIVTFTALIDGHCK----AGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLC 650 (997)
Q Consensus 575 ~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 650 (997)
.|++..+.| +...+..+...|.. .+++++|...|++.... .+...+..|...|.
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------------~~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------------------GRDSGQQSMGDAYF 158 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------------------CCHHHHHHHHHHHH
Confidence 777777654 55666666666766 67777777777776653 23445556666666
Q ss_pred h----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-
Q 001911 651 K----VHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCK----VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK- 721 (997)
Q Consensus 651 ~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~- 721 (997)
. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|..
T Consensus 159 ~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 232 (490)
T 2xm6_A 159 EGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG 232 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 5 677888888888877654 56677777777777 778888888888888765 55666777777775
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--
Q 001911 722 ---DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK----VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKV-- 792 (997)
Q Consensus 722 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-- 792 (997)
.+++++|...|++..+.+ +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|...
T Consensus 233 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~ 306 (490)
T 2xm6_A 233 IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAE 306 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBT
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCC
Confidence 778888888888887754 45566667777776 788888888888887654 556666777777666
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHH
Q 001911 793 ---GKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASG---LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVS 866 (997)
Q Consensus 793 ---g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a 866 (997)
+++++|+.+|++..+.| +...+..+...|...| ++++|..++++..+.
T Consensus 307 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----------------------- 360 (490)
T 2xm6_A 307 GVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----------------------- 360 (490)
T ss_dssp TBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----------------------
T ss_pred CCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----------------------
Confidence 78888888888888764 4566777777777656 677888888776552
Q ss_pred HHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHH
Q 001911 867 LGLVNEMGKTDSVPIVPAYRILIDHYIK----AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKA 938 (997)
Q Consensus 867 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 938 (997)
.+...+..|+.+|.. .+++++|++.|+++.+.. +...+..|+..|.. .+++++|
T Consensus 361 -------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 361 -------------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-----LSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp -------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 234567778888888 788899999998888753 57788888888887 7888999
Q ss_pred HHHHHHHHHcCCC-C-CHHHHHHHHHHHHh
Q 001911 939 FELYVDMIRKDGS-P-ELSTFVHLIKGLIR 966 (997)
Q Consensus 939 ~~~~~~~~~~~~~-p-~~~~~~~l~~~y~~ 966 (997)
...|+++.+.+.. | +..+...|+.++.+
T Consensus 423 ~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 423 WAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999988886533 3 35566677776554
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=3.6e-16 Score=179.65 Aligned_cols=365 Identities=13% Similarity=0.047 Sum_probs=308.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 001911 537 ARNWFDEMVKEGCDPNVVTYTALIHAYLK----ARKPSQANELFETMLSKGCIPNIVTFTALIDGHCK----AGDIERAC 608 (997)
Q Consensus 537 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 608 (997)
+...+....+. .+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 45556665554 377788888888888 899999999999998875 67788888899998 89999999
Q ss_pred HHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001911 609 RIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCK----VHKVREAHDLLDAMSVVGCEPNNIVYDALIDGF 684 (997)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 684 (997)
..|++.... .+...+..|...|.. .+++++|.+.|++....| +...+..|...|
T Consensus 100 ~~~~~a~~~-------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 157 (490)
T 2xm6_A 100 IWYKKAALK-------------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAY 157 (490)
T ss_dssp HHHHHHHHT-------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHC-------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 999998763 245567778888887 789999999999998865 567788888888
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 685 CK----VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK----DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK 756 (997)
Q Consensus 685 ~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 756 (997)
.. .+++++|...|++..+.| +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|..
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYF 231 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 87 789999999999999975 67888888888888 899999999999999865 56778888888886
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 001911 757 ----VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK----VGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCAS- 827 (997)
Q Consensus 757 ----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~- 827 (997)
.+++++|.++|++..+.| +...+..+...|.. .+++++|+++|++..+.| +...+..+...|...
T Consensus 232 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~ 305 (490)
T 2xm6_A 232 GIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGA 305 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCB
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Confidence 789999999999998864 56677777777777 899999999999998864 566778888888887
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC---CHHH
Q 001911 828 ----GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG---RLEV 900 (997)
Q Consensus 828 ----g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~ 900 (997)
+++++|..++++..+.+ +...+..|+.+|...| ++++
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~~------------------------------------~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQG------------------------------------DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHTT------------------------------------CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhcC------------------------------------CHHHHHHHHHHHHhCCCcccHHH
Confidence 89999999999876632 3456778999988866 8999
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 001911 901 ALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIR----VNKWEE 972 (997)
Q Consensus 901 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~----~g~~~e 972 (997)
|++.|+++.+.. +...+..|+..|.. .+++++|+..|+++.+.+ ++.++..|+.+|.. .+++++
T Consensus 350 A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 350 AVEWFRKAAAKG-----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 999999999863 78899999999998 899999999999999954 57889999999999 899999
Q ss_pred HHHHHHHhhccCC
Q 001911 973 ALQLSYSICHTDI 985 (997)
Q Consensus 973 A~~~~~~~~~~~~ 985 (997)
|..++++..+.+.
T Consensus 422 A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 422 AWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999988763
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.5e-17 Score=180.52 Aligned_cols=300 Identities=9% Similarity=-0.006 Sum_probs=252.1
Q ss_pred CCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 001911 635 KEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGS 714 (997)
Q Consensus 635 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 714 (997)
.+.+...+..+...+...|++++|.++|+++.... +.+...+..++..+...|++++|...++++.+..+. +...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 35667778889999999999999999999998876 455667777888899999999999999999998654 6778889
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 001911 715 LIDRLFKDK-RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 715 li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 793 (997)
+...+...| ++++|...++++.+.. +.+...|..+...+...|++++|.+.++++.+.... +...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999864 446778999999999999999999999999986433 5667777999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 794 KVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 794 ~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
++++|++.++++.+.. +.+...+..+...+...|++++|...++++..... ..
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------~~ 226 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK--------------------------AI 226 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT--------------------------TT
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh--------------------------hc
Confidence 9999999999999863 33688999999999999999999999998765310 00
Q ss_pred ccC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 874 GKT-DSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 874 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
... ..+.....+..++.+|...|++++|++.++++.+..|. +..++..++.++...|++++|...++++++ ..|
T Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p 301 (330)
T 3hym_B 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ---NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRR 301 (330)
T ss_dssp SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCS
T ss_pred cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc---chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCC
Confidence 000 11223457889999999999999999999999988765 788999999999999999999999999998 678
Q ss_pred C-HHHHHHHHHHHH-hcCCH
Q 001911 953 E-LSTFVHLIKGLI-RVNKW 970 (997)
Q Consensus 953 ~-~~~~~~l~~~y~-~~g~~ 970 (997)
+ ..++..++.+|. ..|+.
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC-
T ss_pred CchHHHHHHHHHHHHHhCch
Confidence 5 889999999984 55553
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.1e-17 Score=178.03 Aligned_cols=294 Identities=11% Similarity=-0.026 Sum_probs=239.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHH
Q 001911 585 IPNIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDA 664 (997)
Q Consensus 585 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 664 (997)
+.+...+..+...+...|++++|..+|+++.... +.+...+..++..+...|++++|...+++
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 81 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-----------------PFHASCLPVHIGTLVELNKANELFYLSHK 81 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCTTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------CCChhhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4455566777788888899999999988887653 45566777788888889999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 001911 665 MSVVGCEPNNIVYDALIDGFCKVG-KLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPN 743 (997)
Q Consensus 665 m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 743 (997)
+.... +.+..++..+...+...| ++++|...|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+
T Consensus 82 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 158 (330)
T 3hym_B 82 LVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGC 158 (330)
T ss_dssp HHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTC
T ss_pred HHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-ccc
Confidence 88765 556778888888999999 899999999999887644 56778888999999999999999999988764 334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--------CCCCHH
Q 001911 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG--------CAPNFV 815 (997)
Q Consensus 744 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~ 815 (997)
...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|+..++++.+.. ......
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH
Confidence 5677778899999999999999999998864 3367888999999999999999999999988631 122467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
++..+..++...|++++|...+++..+.. +.+...+..++.+|...
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLI----------------------------------PQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhC----------------------------------ccchHHHHHHHHHHHHh
Confidence 89999999999999999999999987642 22355788899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH-HhcCCHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESL-SLARKID 936 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 936 (997)
|++++|.+.++++.+..|. +...+..++.++ ...|+.+
T Consensus 284 g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRD---DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSC---CHHHHHHHHHHHHTTTTC--
T ss_pred ccHHHHHHHHHHHHccCCC---chHHHHHHHHHHHHHhCchh
Confidence 9999999999999998775 788888898888 4556654
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=7.2e-18 Score=186.36 Aligned_cols=291 Identities=11% Similarity=-0.038 Sum_probs=227.4
Q ss_pred HHhcCChHHHHH-HHHHHHhcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 001911 649 LCKVHKVREAHD-LLDAMSVVGC-EP--NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKR 724 (997)
Q Consensus 649 ~~~~g~~~~A~~-~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 724 (997)
+.-.|++++|.+ .+++...... .| +...+..+...+...|++++|...|+++.+..+. +..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 344578888888 7776554321 11 3455778888899999999999999999988644 77788889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHH
Q 001911 725 LDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTA---------------MIDGF 789 (997)
Q Consensus 725 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---------------li~~~ 789 (997)
+++|...++++.+.. +.+..++..+...|...|++++|.+.++++.+.... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999988764 457788889999999999999999999998876432 2222211 23344
Q ss_pred hccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
...|++++|+..++++.+..... +..++..+..++...|++++|...++++....
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------ 247 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR------------------------ 247 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------
Confidence 48899999999999999863111 48899999999999999999999999987642
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 869 LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
+.+...+..++.+|...|++++|++.++++.+..|. +..++..++.++...|++++|...++++++
T Consensus 248 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~- 313 (368)
T 1fch_A 248 ----------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG---YIRSRYNLGISCINLGAHREAVEHFLEALN- 313 (368)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred ----------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 233567889999999999999999999999988765 788999999999999999999999999988
Q ss_pred CCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 949 DGSPE------------LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 949 ~~~p~------------~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
..|+ ..+|..++.+|...|++++|..++++.+
T Consensus 314 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 314 -MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp -HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred -hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 3342 5789999999999999999999887543
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=3.1e-15 Score=173.77 Aligned_cols=408 Identities=13% Similarity=0.085 Sum_probs=277.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 517 DVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALID 596 (997)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 596 (997)
+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++.+.. .|+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 5667777776 366777777777777777653 225566777777777777777777777777765 356666655554
Q ss_pred HH-HHcCCHHHHHH----HHHHHHhccCCCchhHHHHHhccCCC-CCCceeHHHHHHHHHh---------cCChHHHHHH
Q 001911 597 GH-CKAGDIERACR----IYARMKGNAEISDVDIYFRVLDNNCK-EPNVYTYGALIDGLCK---------VHKVREAHDL 661 (997)
Q Consensus 597 ~~-~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~---------~g~~~~A~~~ 661 (997)
.. ...|+.+.|.+ +|+...... |. +++...|...+....+ .|++++|..+
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~---------------g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKI---------------GMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHT---------------TTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHC---------------CCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 22 33455555544 555554321 11 2344566666665543 6889999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HcC---CCCC--------HHh
Q 001911 662 LDAMSVVGCEPNNIVYDALIDGF-------------CKVGKLDEAQMVFSKML------EHG---CNPN--------VYT 711 (997)
Q Consensus 662 ~~~m~~~~~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~ 711 (997)
|++.+.....+....|....... .+.+++..|..++.... +.. +.|+ ...
T Consensus 153 y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 153 YQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 99998732111123343322211 12345677777766532 221 2333 234
Q ss_pred HHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHH
Q 001911 712 YGSLIDRLFKD----KRL----DLALKVISKMLEDSYAPNVVIYTEMIDGLIK-------VGKTE-------EAYKVMLM 769 (997)
Q Consensus 712 ~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~ 769 (997)
|...+...... ++. +.+..+|++++... +.+...|..++..+.+ .|+++ +|..++++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 54444332221 222 47778888888753 4567788888887775 68876 89999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001911 770 MEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-F-VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPT 847 (997)
Q Consensus 770 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 847 (997)
..+.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|++..+..
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--- 386 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--- 386 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---
Confidence 886313336888889999999999999999999999985 564 3 578888888889999999999999887632
Q ss_pred chhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHH
Q 001911 848 HVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDH-YIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLI 926 (997)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 926 (997)
+.....|...+.. +...|+.++|..+|+++.+..|+ +...|..++
T Consensus 387 -------------------------------~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~---~~~~~~~~~ 432 (530)
T 2ooe_A 387 -------------------------------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---IPEYVLAYI 432 (530)
T ss_dssp -------------------------------TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred -------------------------------CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC---CHHHHHHHH
Confidence 1112223333332 34689999999999999988775 788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 927 ESLSLARKIDKAFELYVDMIRKD-GSPE--LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 927 ~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
..+...|+.++|..+|++++... ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 433 ~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 433 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999853 2343 447888888888999999999999888663
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=1e-16 Score=177.04 Aligned_cols=298 Identities=14% Similarity=0.000 Sum_probs=235.4
Q ss_pred HHHcCCHHHHHH-HHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 001911 598 HCKAGDIERACR-IYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIV 676 (997)
Q Consensus 598 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 676 (997)
+...|++++|.. .+++....... ....+...+..+...+.+.|++++|...|+++.... +.+..+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~-------------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 100 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEE-------------NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEA 100 (368)
T ss_dssp -----------CHHHHCCCCCCSS-------------CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCC-------------CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 344578888888 77766543210 012246778899999999999999999999999876 667889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------
Q 001911 677 YDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTE------- 749 (997)
Q Consensus 677 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------- 749 (997)
+..+...+...|++++|...|+++.+..+. +..++..+...+...|++++|...++++.+... .+...+..
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 178 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGG 178 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC--------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhh
Confidence 999999999999999999999999998654 788999999999999999999999999998642 22222221
Q ss_pred --------HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 001911 750 --------MIDGLIKVGKTEEAYKVMLMMEEKGCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRV 819 (997)
Q Consensus 750 --------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ 819 (997)
.+..+...|++++|...++++.+..... +..++..+...+...|++++|+..++++... .| +..++..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~ 256 (368)
T 1fch_A 179 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNK 256 (368)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 1333348899999999999999863321 5889999999999999999999999999986 35 6889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 899 (997)
+..++...|++++|...++++.+.. +.+...+..++.+|.+.|+++
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQ----------------------------------PGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCcHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999987642 234567889999999999999
Q ss_pred HHHHHHHHHhcCCCCC--------CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 900 VALELHEEMTSFSSNS--------AASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+|++.++++.+..|.. .....+|..++.++...|++++|..++++.++
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999998876542 11268899999999999999999998876544
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=4.1e-17 Score=180.05 Aligned_cols=262 Identities=11% Similarity=-0.042 Sum_probs=168.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 677 YDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK 756 (997)
Q Consensus 677 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 756 (997)
+..+...+.+.|++++|+..|+++.+..+. +..++..+...+...|++++|+..|+++.+.. +.+..++..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 334444444444444444444444444322 34444444444555555555555555444432 2234455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 001911 757 VGKTEEAYKVMLMMEEKGCY---------PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCA-PNFVTYRVLINHCCA 826 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~l~~~~~~ 826 (997)
.|++++|.+.|+++.+.... .....+..+...+...|++++|++.++++.+.... ++..++..+...|..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555555442100 01233445577788888999999999988886311 157888888999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 827 SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHE 906 (997)
Q Consensus 827 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 906 (997)
.|++++|...++++.+.. +.+...|..++.+|...|++++|++.++
T Consensus 226 ~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR----------------------------------PEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998877643 2335578889999999999999999999
Q ss_pred HHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHhcCCHHHH
Q 001911 907 EMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-------------LSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~y~~~g~~~eA 973 (997)
++.+..|. +..++..++.+|...|++++|...|+++++ ..|+ ..+|..|+.++...|+.+.|
T Consensus 272 ~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 272 RALEIQPG---FIRSRYNLGISCINLGAYREAVSNFLTALS--LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHCTT---CHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--HHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 99887765 688888999999999999999999999887 3343 46788999999999999988
Q ss_pred HHHHHH
Q 001911 974 LQLSYS 979 (997)
Q Consensus 974 ~~~~~~ 979 (997)
....++
T Consensus 347 ~~~~~~ 352 (365)
T 4eqf_A 347 QAANLG 352 (365)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 887765
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.1e-14 Score=169.16 Aligned_cols=412 Identities=11% Similarity=0.030 Sum_probs=295.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001911 480 IPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTAL 559 (997)
Q Consensus 480 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 559 (997)
+-+...|..++. +.+.|++++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|+++++.. |+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346667888887 467889999999999998764 3367888899999999999999999999998863 577777766
Q ss_pred HHHH-HhcCChhHHHH----HHHHHHhC-CCC-CCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhccCCCch
Q 001911 560 IHAY-LKARKPSQANE----LFETMLSK-GCI-PNIVTFTALIDGHCK---------AGDIERACRIYARMKGNAEISDV 623 (997)
Q Consensus 560 l~~~-~~~g~~~~A~~----~~~~m~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~ 623 (997)
+... ...|+.++|.+ +|+..+.. |.. ++...|...+....+ .|+++.|..+|++..... .
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~--- 161 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-M--- 161 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-C---
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-h---
Confidence 6433 34577776655 66666543 433 356677777766554 688999999999987631 0
Q ss_pred hHHHHHhccCCCCCCceeHHHHHHH-----------H--HhcCChHHHHHHHHHHH------hcC---CCCC--------
Q 001911 624 DIYFRVLDNNCKEPNVYTYGALIDG-----------L--CKVHKVREAHDLLDAMS------VVG---CEPN-------- 673 (997)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~li~~-----------~--~~~g~~~~A~~~~~~m~------~~~---~~~~-------- 673 (997)
.+....|...... . .+.+++..|..++..+. +.. ++|+
T Consensus 162 ------------~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 162 ------------INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp ------------TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred ------------hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 0001122211110 0 13456777877776632 211 2443
Q ss_pred HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------cCCHH-------HHHHH
Q 001911 674 NIVYDALIDGFCKV----GKL----DEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK-------DKRLD-------LALKV 731 (997)
Q Consensus 674 ~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~ 731 (997)
...|...+...... ++. +++..+|++++...+. +...|...+..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 24555555433221 232 4788899999987543 67888888888775 68877 99999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 001911 732 ISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYP-NV-VTYTAMIDGFGKVGKVDKCLELLRQMSSKG 809 (997)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 809 (997)
+++.++.-.+.+...|..++..+.+.|++++|..+|+++.+. .| +. ..|..++..+.+.|++++|.++|++..+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999987323456889999999999999999999999999985 44 33 58999998899999999999999999986
Q ss_pred CCC-CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHH
Q 001911 810 CAP-NFVTYRVLINH-CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRI 887 (997)
Q Consensus 810 ~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 887 (997)
.| +...|...+.. +...|+.++|..+|++..+.. +.+...|..
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~----------------------------------p~~~~~~~~ 430 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY----------------------------------GDIPEYVLA 430 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH----------------------------------TTCHHHHHH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC----------------------------------CCCHHHHHH
Confidence 34 33444433333 346899999999999887642 123567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSA-ASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
++..+.+.|+.++|..+|+++....|..+ .....|...+......|+.+.+..+++++.+ ..|
T Consensus 431 ~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~--~~p 494 (530)
T 2ooe_A 431 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT--AFR 494 (530)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH--HTH
T ss_pred HHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCc
Confidence 99999999999999999999998755321 2344777777777888999999999999988 456
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=3.1e-16 Score=169.91 Aligned_cols=280 Identities=12% Similarity=-0.032 Sum_probs=205.5
Q ss_pred CceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 001911 638 NVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLID 717 (997)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 717 (997)
+...+..+...+...|++++|..+|+++.... +.+..++..+...+...|++++|...++++.+..+. +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 44556677777788888888888888877665 456677777777788888888888888877776433 5666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCH
Q 001911 718 RLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMID--GFGKVGKV 795 (997)
Q Consensus 718 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~ 795 (997)
.+...|++++|.+.++++.+.. +.+...+..+... .|+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 7777777777777777776643 1122222221100 011111222313 37788899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhcc
Q 001911 796 DKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGK 875 (997)
Q Consensus 796 ~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 875 (997)
++|++.++++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------------------- 202 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR------------------------------- 202 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------------------------------
Confidence 99999999998863 3368889999999999999999999999887642
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 001911 876 TDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-- 953 (997)
Q Consensus 876 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 953 (997)
+.+...+..++.+|...|++++|++.++++.+..|. +..++..++.++...|++++|.+.++++++ ..|+
T Consensus 203 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 274 (327)
T 3cv0_A 203 ---PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG---YVRVMYNMAVSYSNMSQYDLAAKQLVRAIY--MQVGGT 274 (327)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTSC
T ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccc
Confidence 233557888999999999999999999999887765 788899999999999999999999999988 4455
Q ss_pred -----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 954 -----------LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 954 -----------~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..++..++.+|...|++++|...+++..+
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 275 TPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp C-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 57899999999999999999999876544
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=9.4e-17 Score=177.12 Aligned_cols=269 Identities=12% Similarity=0.000 Sum_probs=217.6
Q ss_pred CCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 001911 637 PNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLI 716 (997)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 716 (997)
.+...+..+...+.+.|++++|.+.|+++.... +.+..+|..+...|...|++++|+..|+++.+..+. +..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 345568888889999999999999999998876 567888999999999999999999999999987643 678889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 001911 717 DRLFKDKRLDLALKVISKMLEDSYAPN-----------VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY-PNVVTYTA 784 (997)
Q Consensus 717 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ 784 (997)
..|...|++++|...++++.+.. |+ ...+..+...+.+.|++++|.+.++++.+.... ++..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999988742 22 223344578899999999999999999986432 26889999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHH
Q 001911 785 MIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFI 864 (997)
Q Consensus 785 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 864 (997)
+...|...|++++|++.|+++.+.. +.+..+|..+..+|...|++++|...++++.+..
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------- 277 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-------------------- 277 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------
Confidence 9999999999999999999999862 3368899999999999999999999999987643
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc---------chhhHHHHHHHHHhcCCH
Q 001911 865 VSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAA---------SRNSTLLLIESLSLARKI 935 (997)
Q Consensus 865 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~ 935 (997)
+.+...+..++.+|...|++++|++.++++.+..|.... +..+|..++.++...|+.
T Consensus 278 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 278 --------------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp --------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred --------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 223567889999999999999999999999887654221 468899999999999999
Q ss_pred HHHHHHHHH
Q 001911 936 DKAFELYVD 944 (997)
Q Consensus 936 ~~A~~~~~~ 944 (997)
+.+..+.++
T Consensus 344 ~~a~~~~~~ 352 (365)
T 4eqf_A 344 ELFQAANLG 352 (365)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 988877655
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=2e-15 Score=172.96 Aligned_cols=384 Identities=13% Similarity=-0.016 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--
Q 001911 519 YTYTILIDNFCKAGLIEQARNWFDEMVKE--------GCDPNVVTYTALIHAYLKARKPSQANELFETMLSK-----G-- 583 (997)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g-- 583 (997)
..|+.|...+...|++++|++.|++..+. .......+|+.+...|...|++++|...+++..+. +
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 34444444444445555554444443321 00112344455555555555555555555444321 0
Q ss_pred CCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHH---HHhcCChHHH
Q 001911 584 CIPNIVTFTALIDGHCK--AGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDG---LCKVHKVREA 658 (997)
Q Consensus 584 ~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A 658 (997)
......++..+..++.. .+++++|...|++..... +.+...+..+... +...++.++|
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-----------------p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----------------PKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----------------TTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 01123344444333333 234666666666665432 2233333333333 2334555666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 659 HDLLDAMSVVGCEPNNIVYDALIDGFCK----VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISK 734 (997)
Q Consensus 659 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 734 (997)
++.+++..... +.+..++..+...+.. .|++++|...+++.....+. +..++..+...|...|++++|...+++
T Consensus 195 l~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 195 IDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 66666665544 3344455444444333 34556666666666665433 555666666667777777777777776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH
Q 001911 735 MLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNF 814 (997)
Q Consensus 735 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 814 (997)
..+.. +.+..++..+...|...+....+.. ...........+.+++|+..+++..+.. +.+.
T Consensus 273 al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 334 (472)
T 4g1t_A 273 ALEYI-PNNAYLHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLF 334 (472)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTC
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchh
Confidence 66543 2344555555554432211100000 0000001111223456666666666542 1234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHH-HHH
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILID-HYI 893 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~~ 893 (997)
.++..+...+...|++++|...|++......++.. ....+..++. .+.
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~-------------------------------~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSKELTPVA-------------------------------KQLLHLRYGNFQLY 383 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH-------------------------------HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH-------------------------------HHHHHHHHHHHHHH
Confidence 55666677777777777777777776654211000 0011222332 234
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEE 972 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~e 972 (997)
..|++++|++.|+++.+..|. +.. . .+..+.+.+++++.++ ..| ++.+|..|+.+|...|++++
T Consensus 384 ~~~~~~~Ai~~y~kal~i~~~---~~~-~---------~~~~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKINQK---SRE-K---------EKMKDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQ 448 (472)
T ss_dssp TSSCHHHHHHHHHHHHHSCCC---CHH-H---------HHHHHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC-
T ss_pred HCCCHHHHHHHHHHHHhcCcc---cHH-H---------HHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 567777777777777766543 111 1 1122344455555555 345 36677777777777777777
Q ss_pred HHHHHHHhhccCC
Q 001911 973 ALQLSYSICHTDI 985 (997)
Q Consensus 973 A~~~~~~~~~~~~ 985 (997)
|++.+++.++.+.
T Consensus 449 A~~~y~kALe~~~ 461 (472)
T 4g1t_A 449 ADEDSERGLESGS 461 (472)
T ss_dssp -------------
T ss_pred HHHHHHHHHhcCC
Confidence 7777777666543
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.7e-15 Score=171.90 Aligned_cols=338 Identities=14% Similarity=0.003 Sum_probs=224.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHH
Q 001911 587 NIVTFTALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMS 666 (997)
Q Consensus 587 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 666 (997)
....|+.+...+...|++++|++.|++..+.. .........+....+|+.+...|...|++++|...+++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~--------~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELI--------QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------HhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34667888888888888888888888765421 0000011123345678999999999999999999998876
Q ss_pred hcC-------CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH---HHhcCCHHHHHHHHHH
Q 001911 667 VVG-------CEPNNIVYDALIDGFCKV--GKLDEAQMVFSKMLEHGCNPNVYTYGSLIDR---LFKDKRLDLALKVISK 734 (997)
Q Consensus 667 ~~~-------~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~ 734 (997)
... ......++..+..++... +++++|+..|++..+..+. +...+..+... +...++.++|++.+++
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 421 112356677666666654 4699999999999998654 45555555544 3456778889999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 001911 735 MLEDSYAPNVVIYTEMIDGLIK----VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC 810 (997)
Q Consensus 735 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 810 (997)
.++.. +.+...+..+...+.. .|+.++|.+.+++...... .+...+..+...|...|++++|++.+++..+.
T Consensus 201 al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-- 276 (472)
T 4g1t_A 201 AIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-- 276 (472)
T ss_dssp HHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--
Confidence 88754 3456666666655554 4677899999999887643 37788899999999999999999999999986
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHH
Q 001911 811 AP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILI 889 (997)
Q Consensus 811 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 889 (997)
.| +..++..+..+|...+....+..... .... .........|...+.+..... +.....+..++
T Consensus 277 ~p~~~~~~~~lg~~y~~~~~~~~~~~~~~----------~~~~----~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg 341 (472)
T 4g1t_A 277 IPNNAYLHCQIGCCYRAKVFQVMNLRENG----------MYGK----RKLLELIGHAVAHLKKADEAN-DNLFRVCSILA 341 (472)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHC----------------CH----HHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHH----------HHHH----HHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHH
Confidence 46 57777777777654322211111000 0000 001112233334443333221 22344688899
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001911 890 DHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIES-LSLARKIDKAFELYVDMIRKDGSPEL 954 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~ 954 (997)
..|...|++++|++.|+++.+..+........+..++.. ....|++++|+..|+++++ +.|+.
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~ 405 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKS 405 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCC
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccc
Confidence 999999999999999999998765321122344455543 3567999999999999999 77863
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.1e-15 Score=161.32 Aligned_cols=275 Identities=11% Similarity=0.069 Sum_probs=214.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 001911 647 DGLCKVHKVREAHDLLDAMSVVGCEPNN--IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKR 724 (997)
Q Consensus 647 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 724 (997)
.-....|++.+|++.++..... .|+. .....+..+|...|+++.|+..++. . -.|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCc
Confidence 3455689999999988876543 3432 3456678899999999999986654 1 34577788888899999999
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001911 725 LDLALKVISKMLEDSYAP-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLR 803 (997)
Q Consensus 725 ~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 803 (997)
.++|++.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998765434 566777778899999999999999987 4578889999999999999999999999
Q ss_pred HHHhCCCCCCHH-H--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC
Q 001911 804 QMSSKGCAPNFV-T--YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP 880 (997)
Q Consensus 804 ~m~~~g~~p~~~-~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 880 (997)
++.+. .|+.. . ...++..+...|++++|..+|+++.+.. +.
T Consensus 155 ~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~----------------------------------p~ 198 (291)
T 3mkr_A 155 KMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC----------------------------------SP 198 (291)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----------------------------------CC
T ss_pred HHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----------------------------------CC
Confidence 99986 46532 1 1223345556689999999999988753 34
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDK-AFELYVDMIRKDGSPELSTFVH 959 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~ 959 (997)
+...++.++.+|.+.|++++|++.++++.+..|+ +..++..++..+...|+.++ +.++++++++ ..|+...
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~--- 270 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG---HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF--- 270 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---
Confidence 5567888999999999999999999999998876 88899999999999999865 6788999998 6786321
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 001911 960 LIKGLIRVNKWEEALQLS 977 (997)
Q Consensus 960 l~~~y~~~g~~~eA~~~~ 977 (997)
+.+.+.+.+.++++..-|
T Consensus 271 ~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 271 IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 223455566666665544
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=188.94 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHh---CCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 301 DTVLYTKMISGLCEASLFEEAMDLLNRMRA---RSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHS 377 (997)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 377 (997)
-..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..+||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456889999999999999999999887763 57889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCcccc------ccc
Q 001911 378 LIHAYCRSGD-YSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLN------KIN 450 (997)
Q Consensus 378 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~ 450 (997)
||+++|+.|+ .++|.++|++|.+.|+.||.++|+.++.+.. .+.+++..+.+ .-+..|+ ..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e----------R~~vL~~Vrkv-~P~f~p~~~~~~~~~t 274 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED----------RATVLKAVHKV-KPTFSLPPQLPPPVNT 274 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH----------HHHHHHHHGGG-CCCCCCCCCCCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh----------HHHHHHHHHHh-CcccCCCCCCcccccc
Confidence 9999999887 4788899999999999999999988876543 24444444444 3344443 234
Q ss_pred hhHHHHHHHccC
Q 001911 451 VSNFVQCLCGAG 462 (997)
Q Consensus 451 ~~~l~~~~~~~g 462 (997)
...+...|.+.+
T Consensus 275 ~~LL~dl~s~d~ 286 (1134)
T 3spa_A 275 SKLLRDVYAKDG 286 (1134)
T ss_dssp CTTTHHHHCCCS
T ss_pred hHHHHHHHccCC
Confidence 444555555444
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=1.1e-15 Score=161.35 Aligned_cols=254 Identities=11% Similarity=0.023 Sum_probs=207.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 001911 682 DGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTE 761 (997)
Q Consensus 682 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 761 (997)
+-....|++..|+..+++.....+.+.......+.++|...|+++.|+..++. .-+|+..++..+...+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34556799999999988776543222234556778999999999999987754 23567788899999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 762 EAYKVMLMMEEKGCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEM 840 (997)
Q Consensus 762 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 840 (997)
+|.+.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++.++.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999876545 566677777899999999999999987 357889999999999999999999999999
Q ss_pred HhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 001911 841 KQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAY---RILIDHYIKAGRLEVALELHEEMTSFSSNSAA 917 (997)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 917 (997)
.+.. |+.... ..++..+...|++++|+.+|+++.+..|.
T Consensus 157 ~~~~-----------------------------------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~--- 198 (291)
T 3mkr_A 157 QDQD-----------------------------------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP--- 198 (291)
T ss_dssp HHHC-----------------------------------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC---
T ss_pred HhhC-----------------------------------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC---
Confidence 8743 332211 12334455669999999999999988775
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH-HHHHHHHhhccCC
Q 001911 918 SRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEE-ALQLSYSICHTDI 985 (997)
Q Consensus 918 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~e-A~~~~~~~~~~~~ 985 (997)
+...++.++.++...|++++|.+.++++++ ..|+ +.++..++.++...|++++ +.++++++.....
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999999999 6785 8899999999999999987 5688888776543
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=1.7e-15 Score=163.96 Aligned_cols=252 Identities=10% Similarity=-0.033 Sum_probs=186.9
Q ss_pred CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 001911 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSL 715 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 715 (997)
+.+...+..+...+...|++++|.+.++++.... +.+..++..+...|...|++++|...++++.+..+. +...+..+
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 129 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVN 129 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 4466788889999999999999999999999875 567889999999999999999999999999987543 22233222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 001911 716 IDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMID--GLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 716 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 793 (997)
... .|+......+.. .+...|++++|.+.++++.+... .+...+..+...+...|
T Consensus 130 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 130 LQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSN 186 (327)
T ss_dssp --------------------------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTT
T ss_pred hHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhc
Confidence 110 011111222312 25667888888888888877633 36778888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 794 KVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 794 ~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
++++|++.++++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 187 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------------- 236 (327)
T 3cv0_A 187 NYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN----------------------------- 236 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred cHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------------
Confidence 8888888888888752 2357788888889999999999999988876542
Q ss_pred ccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---------CcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 874 GKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS---------AASRNSTLLLIESLSLARKIDKAFELYVD 944 (997)
Q Consensus 874 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 944 (997)
+.+...+..++.+|...|++++|.+.++++....|.. ..+...+..++.++...|++++|...+++
T Consensus 237 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 237 -----PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred -----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2234567788899999999999999999988766541 11577888899999999999999988876
Q ss_pred HHH
Q 001911 945 MIR 947 (997)
Q Consensus 945 ~~~ 947 (997)
+++
T Consensus 312 ~l~ 314 (327)
T 3cv0_A 312 NVE 314 (327)
T ss_dssp CSH
T ss_pred HHH
Confidence 544
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=1.7e-15 Score=162.40 Aligned_cols=281 Identities=14% Similarity=0.148 Sum_probs=111.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001911 460 GAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARN 539 (997)
Q Consensus 460 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 539 (997)
+.|++++|.+.++++ ++..+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 667788888888777 23347888888888888888888888542 466677888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 001911 540 WFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGNAE 619 (997)
Q Consensus 540 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 619 (997)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+.
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---- 149 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---- 149 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----
Confidence 77666653 3456677778888888888888777663 3566688888888888888888888887651
Q ss_pred CCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 620 ISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSK 699 (997)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 699 (997)
.|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......
T Consensus 150 ---------------------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 150 ---------------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp ---------------------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred ---------------------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5778888888888888888888877 2677788888888888888888554443
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC
Q 001911 700 MLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV--GKTEEAYKVMLMMEEKGCYP 777 (997)
Q Consensus 700 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p 777 (997)
+ ...+.-...++..|.+.|++++|..+++..+... +.....|+.|.-.|++- +++.+.+++|..-. +++|
T Consensus 203 L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k 274 (449)
T 1b89_A 203 I-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPK 274 (449)
T ss_dssp T-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHH
T ss_pred H-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcH
Confidence 2 1233334467777777888888888887777554 44566677776666653 34445555544221 1222
Q ss_pred ------CHHHHHHHHHHHhccCCHHHHHH
Q 001911 778 ------NVVTYTAMIDGFGKVGKVDKCLE 800 (997)
Q Consensus 778 ------~~~~~~~li~~~~~~g~~~~A~~ 800 (997)
+...|.-+.-.|.+.++++.|..
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 23345666666666666666655
No 35
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=5.1e-15 Score=158.61 Aligned_cols=238 Identities=14% Similarity=0.189 Sum_probs=54.9
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHH
Q 001911 282 KAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLS 361 (997)
Q Consensus 282 ~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 361 (997)
+.|++++|.+++++. ++..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++
T Consensus 15 ~~~~ld~A~~fae~~---~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC---CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445666666666664 2234666777777777777777776654 2455566666766667777777777666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHHHH
Q 001911 362 MMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVFELAEKAYAEMLN 441 (997)
Q Consensus 362 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~ 441 (997)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...+...|. ++.|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~------yeeA~~~Y~~a-- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM------YDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------C------TTTHHHHHHHT--
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCC------HHHHHHHHHHh--
Confidence 55553 3445666667777777777777666663 1444444444433322211 22222222211
Q ss_pred cCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 001911 442 AGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTY 521 (997)
Q Consensus 442 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 521 (997)
..+..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 12333444444555555555555544 13445555555555555555553322221 1122223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001911 522 TILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYL 564 (997)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 564 (997)
..++..|.+.|.+++|..+++...... +.....|+-|...|+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 334445555555555555555544332 223344444444443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.5e-14 Score=148.68 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
.+..++..|...|++++|++.++++.+..|. +..++..++.++...|++++|+..++++++ ..|+ ..++..++.
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKAT 215 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHHHHHHHHHH
Confidence 4445555555555555555555555554443 445555555555555566666665555555 3343 555555556
Q ss_pred HHHhcCCHHHHHHHHHHhhcc
Q 001911 963 GLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 963 ~y~~~g~~~eA~~~~~~~~~~ 983 (997)
+|...|++++|...++++...
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666665555555443
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=179.36 Aligned_cols=152 Identities=9% Similarity=0.095 Sum_probs=116.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001911 672 PNNIVYDALIDGFCKVGKLDEAQMVFSKMLE---HGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYT 748 (997)
Q Consensus 672 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 748 (997)
.-..+||+||++||+.|++++|.++|.+|.+ .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457889999999999999999999877664 4788888999999999999999999999999988888888999999
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC------HHHHHHHH
Q 001911 749 EMIDGLIKVGK-TEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN------FVTYRVLI 821 (997)
Q Consensus 749 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~~~~~l~ 821 (997)
+||+++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ .-++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99988888887 477888888898888888888888888665543 344444444 3344443 34445555
Q ss_pred HHHHhcC
Q 001911 822 NHCCASG 828 (997)
Q Consensus 822 ~~~~~~g 828 (997)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6665554
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=2e-14 Score=144.69 Aligned_cols=197 Identities=18% Similarity=0.153 Sum_probs=154.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 001911 741 APNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRV 819 (997)
Q Consensus 741 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ 819 (997)
+++...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|+..+++.++. .| +...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 456667778888888888888888888888876433 6778888888888888888888888888875 45 5778888
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHH
Q 001911 820 LINHCCAS-----------GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRI 887 (997)
Q Consensus 820 l~~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ 887 (997)
+..++... |++++|+..+++..+.. |+ ...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----------------------------------P~~~~~~~~ 123 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-----------------------------------PRYAPLHLQ 123 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-----------------------------------TTCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-----------------------------------cccHHHHHH
Confidence 88888888 99999999999887643 44 557889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIR 966 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~ 966 (997)
++.+|...|++++|++.|+++.+.. . +...+..++.++...|++++|+..|+++++ ..|+ ..++..++.+|..
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE-D---TPEIRSALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc-c---chHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999876 3 888999999999999999999999999999 6785 8899999999999
Q ss_pred cCCHHHHHHHHHHhh
Q 001911 967 VNKWEEALQLSYSIC 981 (997)
Q Consensus 967 ~g~~~eA~~~~~~~~ 981 (997)
.|++++|+..++++.
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999999998764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.1e-14 Score=145.75 Aligned_cols=237 Identities=12% Similarity=0.035 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 001911 674 NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSY--APN----VVIY 747 (997)
Q Consensus 674 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 747 (997)
...+..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|...++++.+... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456777778888888888888888888776 5777788888888888888888888888775421 111 5778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 001911 748 TEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCA 826 (997)
Q Consensus 748 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~ 826 (997)
..+...|.+.|++++|.+.|+++.+. .|+. ..+...|++++|++.++++... .| +...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 88888889999999999999988875 3443 3456678889999999998885 45 56788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 827 SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHE 906 (997)
Q Consensus 827 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 906 (997)
.|++++|...++++.... +.+...+..++.+|...|++++|++.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA----------------------------------PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC----------------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999887643 2335678889999999999999999999
Q ss_pred HHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CC-HHHHHHHHH
Q 001911 907 EMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS------PE-LSTFVHLIK 962 (997)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------p~-~~~~~~l~~ 962 (997)
++.+..|. +...+..++.++...|++++|...++++++ .. |+ ..++..+..
T Consensus 198 ~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 198 KAIEKDPN---FVRAYIRKATAQIAVKEYASALETLDAART--KDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhCHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hChhhcCCCchHHHHHHHHH
Confidence 99987765 788899999999999999999999999988 44 65 445555444
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=3.2e-14 Score=160.60 Aligned_cols=375 Identities=13% Similarity=0.040 Sum_probs=229.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 524 LIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKP---SQANELFETMLSKGCIPNIVTFTALIDGHCK 600 (997)
Q Consensus 524 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 600 (997)
+...+.+.|++++|+++|++..+.| +...+..|...|...|+. ++|...|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555667777777777777777664 333444455555566666 7777777777643 44445555554444
Q ss_pred cC-----CHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCC
Q 001911 601 AG-----DIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVR---EAHDLLDAMSVVGCEP 672 (997)
Q Consensus 601 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~ 672 (997)
.+ ++++|...|++....+ +...+..|...|...+..+ ++.+.+......|
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g-------------------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--- 139 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG-------------------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--- 139 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT-------------------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---
Confidence 43 6777888887776543 2235666666666554433 3455555555444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK---RLDLALKVISKMLEDSYAPNVVIYTE 749 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 749 (997)
+...+..|...|...+.++++........+.-...+...+..+...|...| +.++|++.|++..+.| .++...+..
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~ 218 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDS 218 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 234555667777777755444444333322211223337777888888888 8888999998888876 455555566
Q ss_pred HHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 750 MIDGLIKV----GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG-F--GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 750 li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
|...|... +++++|.+.|++.. .| ++..+..|... + ...|++++|+++|++..+.| +...+..|..
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~ 291 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGK 291 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 77777554 68899999998887 33 55566666666 4 46789999999999988875 6677777777
Q ss_pred HHHhcC-----CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh---
Q 001911 823 HCCASG-----LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK--- 894 (997)
Q Consensus 823 ~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 894 (997)
.|. .| ++++|..+|++.. . .+..++..|+.+|..
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa-~------------------------------------g~~~A~~~Lg~~y~~G~g 333 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV-G------------------------------------REVAADYYLGQIYRRGYL 333 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT-T------------------------------------TCHHHHHHHHHHHHTTTT
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh-C------------------------------------CCHHHHHHHHHHHHCCCC
Confidence 777 55 8888888887754 1 234566778887776
Q ss_pred -cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--Hhc
Q 001911 895 -AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGL--IRV 967 (997)
Q Consensus 895 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y--~~~ 967 (997)
..+.++|.+.|+++.+.. +......|+..|.. ..++++|...|+++.+.| +..+...+..+. ...
T Consensus 334 ~~~d~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g---~~~a~~~l~~l~~~~~~ 405 (452)
T 3e4b_A 334 GKVYPQKALDHLLTAARNG-----QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD---TPEANDLATQLEAPLTP 405 (452)
T ss_dssp SSCCHHHHHHHHHHHHTTT-----CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC---CHHHHHHHHHHHTTCCH
T ss_pred CCcCHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCH
Confidence 348999999999988753 56677788888875 358999999999998865 222333333332 233
Q ss_pred CCHHHHHHHHHHhh
Q 001911 968 NKWEEALQLSYSIC 981 (997)
Q Consensus 968 g~~~eA~~~~~~~~ 981 (997)
++..+|..+.++-.
T Consensus 406 ~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 406 AQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666766666543
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=2.1e-13 Score=148.71 Aligned_cols=248 Identities=14% Similarity=0.077 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 674 NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKR-LDLALKVISKMLEDSYAPNVVIYTEMID 752 (997)
Q Consensus 674 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 752 (997)
..+|..+...+...|++++|+..++++++..+. +..+|+.+...+...|+ +++|+..|+++++.. +.+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 456777888888999999999999999988654 67788889999999997 999999999998864 457789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh-cCCH
Q 001911 753 GLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCA-SGLL 830 (997)
Q Consensus 753 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~-~g~~ 830 (997)
++.+.|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++++. .| +...|+.+..++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999987544 7889999999999999999999999999986 46 68899999999998 6665
Q ss_pred HHHH-----HHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcC--CHHHHH
Q 001911 831 DEAH-----NLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAG--RLEVAL 902 (997)
Q Consensus 831 ~~A~-----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~ 902 (997)
++|. ..+++.... .|+ ...|+.++.++...| ++++|+
T Consensus 252 ~eA~~~~el~~~~~Al~l-----------------------------------~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL-----------------------------------VPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH-----------------------------------STTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred hHHHHHHHHHHHHHHHHH-----------------------------------CCCCHHHHHHHHHHHHccCccchHHHH
Confidence 8874 666666543 244 558888999999988 699999
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcC--------C-HHHHHHHHHHH-HHcCCCCC-HHHHHHHHHHHHhc
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLAR--------K-IDKAFELYVDM-IRKDGSPE-LSTFVHLIKGLIRV 967 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~~~p~-~~~~~~l~~~y~~~ 967 (997)
+.++++ +..|. +..++..++.+|...| + +++|+++|+++ ++ +.|. ...|..++..+...
T Consensus 297 ~~~~~~-~~~p~---~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 297 NQLLDL-QPSHS---SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHH-TTTCC---CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccCCC---CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHH
Confidence 999998 65554 7889999999998874 3 69999999999 77 7786 77888888877654
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=2.1e-12 Score=135.51 Aligned_cols=221 Identities=10% Similarity=-0.026 Sum_probs=107.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001911 711 TYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK----VGKTEEAYKVMLMMEEKGCYPNVVTYTAMI 786 (997)
Q Consensus 711 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 786 (997)
++..+...+...|++++|...|++..+. .+...+..+...|.. .|++++|.+.|++..+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3444444444444444444444444442 123344444444444 455555555555554443 344444444
Q ss_pred HHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHh
Q 001911 787 DGFGK----VGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCA----SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEG 858 (997)
Q Consensus 787 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 858 (997)
..|.. .+++++|++.|++..+.+ +...+..+...|.. .|++++|..++++..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------- 144 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-------------- 144 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------------
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--------------
Confidence 44444 555555555555555432 34445555555555 555555555555443311
Q ss_pred HhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh---
Q 001911 859 FSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK----AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL--- 931 (997)
Q Consensus 859 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 931 (997)
+...+..++.+|.. .+++++|++.++++.+.. +...+..++..|..
T Consensus 145 ----------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 145 ----------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp ----------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCS
T ss_pred ----------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCC
Confidence 12234445555554 555555555555555432 33445555555555
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccC
Q 001911 932 -ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIR----VNKWEEALQLSYSICHTD 984 (997)
Q Consensus 932 -~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~----~g~~~eA~~~~~~~~~~~ 984 (997)
.+++++|+..++++.+.+ | ..++..|+.+|.. .+++++|++++++..+.+
T Consensus 198 ~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555555555555555521 2 4445555555555 555555555555554443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.4e-13 Score=149.96 Aligned_cols=232 Identities=15% Similarity=0.084 Sum_probs=201.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001911 709 VYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGK-TEEAYKVMLMMEEKGCYPNVVTYTAMID 787 (997)
Q Consensus 709 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~ 787 (997)
...|..+...+.+.|++++|+..++++++.. +.+...|+.+...+...|+ +++|+..|+++.+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3567778888899999999999999999864 4567899999999999997 99999999999997544 7889999999
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHH
Q 001911 788 GFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVS 866 (997)
Q Consensus 788 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a 866 (997)
++...|++++|+..|+++++. .| +...|..+..++...|++++|+..++++.+..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---------------------- 230 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---------------------- 230 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----------------------
T ss_pred HHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----------------------
Confidence 999999999999999999986 56 78999999999999999999999999998753
Q ss_pred HHHHHHhccCCCCCChhhHHHHHHHHHh-cCCHHHH-----HHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC--CHHHH
Q 001911 867 LGLVNEMGKTDSVPIVPAYRILIDHYIK-AGRLEVA-----LELHEEMTSFSSNSAASRNSTLLLIESLSLAR--KIDKA 938 (997)
Q Consensus 867 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A 938 (997)
+.+..+|+.++.+|.. .|..++| ++.+++++...|. +..+|..++.++...| ++++|
T Consensus 231 ------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~---~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 231 ------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH---NESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTTTCGGGCHHH
T ss_pred ------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHccCccchHHH
Confidence 2345689999999999 6665777 5899999998876 8899999999999988 69999
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC---------CHHHHHHHHHHh-hccC
Q 001911 939 FELYVDMIRKDGSPE-LSTFVHLIKGLIRVN---------KWEEALQLSYSI-CHTD 984 (997)
Q Consensus 939 ~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g---------~~~eA~~~~~~~-~~~~ 984 (997)
++.++++ + ..|+ ..++..|+++|.+.| .+++|+++++++ ...+
T Consensus 296 ~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 296 LNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 9999998 4 5675 789999999999985 359999999998 5544
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=3.9e-13 Score=140.96 Aligned_cols=252 Identities=14% Similarity=0.075 Sum_probs=171.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 001911 677 YDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPN--VVIYTEMIDGL 754 (997)
Q Consensus 677 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~ 754 (997)
+......+...|++++|+..|+++.+..+. +...+..+...+...|++++|+..++++.+....++ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 445566677778888888888887776543 445677777778888888888888888776321111 23477778888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEA 833 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 833 (997)
...|++++|.+.|+++.+.... +...+..+...|...|++++|++.+++..+. .| +...+..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888775332 5567778888888888888888888888775 44 566777777344445588888
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhc
Q 001911 834 HNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGR---LEVALELHEEMTS 910 (997)
Q Consensus 834 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 910 (997)
...++++.+.. +.+...+..++.++...|+ +++|+..++++.+
T Consensus 162 ~~~~~~a~~~~----------------------------------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 162 DSSFVKVLELK----------------------------------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHhC----------------------------------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 88888876542 1224566677777777777 7778888888765
Q ss_pred CCCCCCc-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 001911 911 FSSNSAA-----SRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVN 968 (997)
Q Consensus 911 ~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g 968 (997)
....... ...++..++..|...|++++|.+.++++++ +.|+ ..++..+.......+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHHhhhhhcccc
Confidence 4311001 125677788888888888888888888888 5675 666666666554443
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1e-13 Score=145.69 Aligned_cols=248 Identities=10% Similarity=-0.049 Sum_probs=154.0
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001911 687 VGKLDEAQMVFSKMLEHGCN---PNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEA 763 (997)
Q Consensus 687 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 763 (997)
.|++++|+..++++.+.... .+..++..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34556666666666554221 123455556666666666666666666666543 33456666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 764 YKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 764 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
.+.|+++.+... .+...+..+...|...|++++|++.++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777777766422 24566777777777777777777777777764 354333444444556667888888877766543
Q ss_pred CCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-cchhhH
Q 001911 844 YWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA-ASRNST 922 (997)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 922 (997)
. |+......++..+...++.++|++.++++....|... .+...+
T Consensus 174 ~-----------------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (275)
T 1xnf_A 174 S-----------------------------------DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 218 (275)
T ss_dssp S-----------------------------------CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred C-----------------------------------CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHH
Confidence 2 2222223366667777777888888888776543211 125677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 923 LLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQLS 977 (997)
Q Consensus 923 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~~ 977 (997)
..++.++...|++++|...++++++ ..|+. +...+.++...|++++|++-+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~--~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVA--NNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 7788888888888888888888887 55642 223366777778888877665
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=3.7e-13 Score=141.19 Aligned_cols=239 Identities=13% Similarity=-0.015 Sum_probs=196.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 001911 710 YTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYP--NVVTYTAMID 787 (997)
Q Consensus 710 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~ 787 (997)
..+......+...|++++|+..++++++.. +.+...+..+...|...|++++|.+.++++.+.+..| ....|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345667788999999999999999999864 3456688899999999999999999999999843222 2345888999
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHH
Q 001911 788 GFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVS 866 (997)
Q Consensus 788 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a 866 (997)
.+...|++++|++.|++..+. .| +..++..+..+|...|++++|...+++..+..
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------------- 138 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---------------------- 138 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS----------------------
T ss_pred HHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC----------------------
Confidence 999999999999999999986 34 57899999999999999999999998876542
Q ss_pred HHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC---HHHHHHHHH
Q 001911 867 LGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK---IDKAFELYV 943 (997)
Q Consensus 867 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 943 (997)
+.+...+..++..+...+++++|++.++++.+..|. +...+..++.++...|+ +++|...++
T Consensus 139 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 139 ------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN---IYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp ------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred ------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 223456777884444556999999999999998775 67888889999998888 889999999
Q ss_pred HHHHcC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccc
Q 001911 944 DMIRKD-GSPE------LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWL 988 (997)
Q Consensus 944 ~~~~~~-~~p~------~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~ 988 (997)
++++.. ..|+ ..++..++.+|...|++++|++.+++++.....-.
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 998731 1243 26888999999999999999999999988765543
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=3.5e-13 Score=152.07 Aligned_cols=344 Identities=16% Similarity=0.077 Sum_probs=237.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhccCCCchhHHHHHhccCCC
Q 001911 559 LIHAYLKARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDI---ERACRIYARMKGNAEISDVDIYFRVLDNNCK 635 (997)
Q Consensus 559 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (997)
+...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|...|++..+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~------------------- 66 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD------------------- 66 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-------------------
Confidence 5667778899999999999998876 333455566666777777 899999988863
Q ss_pred CCCceeHHHHHHHHHhcC-----ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCC
Q 001911 636 EPNVYTYGALIDGLCKVH-----KVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKL---DEAQMVFSKMLEHGCNP 707 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p 707 (997)
. +...+..+...+...+ ++++|.+.|++....| .++ .+..|...|...+.. .++.+.+....+.|
T Consensus 67 ~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--- 139 (452)
T 3e4b_A 67 T-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--- 139 (452)
T ss_dssp -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---
T ss_pred C-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---
Confidence 2 5556777777555554 7889999999999877 333 566677777765543 34556666666655
Q ss_pred CHHhHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHH
Q 001911 708 NVYTYGSLIDRLFKDKRL----DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVG---KTEEAYKVMLMMEEKGCYPNVV 780 (997)
Q Consensus 708 ~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~ 780 (997)
+......+...|...+.+ +.+..+++.... .++..+..|...|.+.| +.++|++.|++..+.|.. +..
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~ 214 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQ 214 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHH
Confidence 345666777777777744 444444444433 23337888888999999 899999999999988644 666
Q ss_pred HHHHHHHHHhcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 001911 781 TYTAMIDGFGKV----GKVDKCLELLRQMSSKGCAPNFVTYRVLINH-C--CASGLLDEAHNLLEEMKQTYWPTHVAGYR 853 (997)
Q Consensus 781 ~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 853 (997)
.+..|...|... +++++|+++|++.. .| +...+..+... + ...|++++|..++++..+.
T Consensus 215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---------- 280 (452)
T 3e4b_A 215 RVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---------- 280 (452)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------
Confidence 556677777655 79999999999987 33 45566667766 4 4688999999999987653
Q ss_pred HHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH
Q 001911 854 KVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG-----RLEVALELHEEMTSFSSNSAASRNSTLLLIES 928 (997)
Q Consensus 854 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 928 (997)
.+..++..|+.+|. .| ++++|++.|+++. ++ +...+..|+..
T Consensus 281 --------------------------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g---~~~A~~~Lg~~ 327 (452)
T 3e4b_A 281 --------------------------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR---EVAADYYLGQI 327 (452)
T ss_dssp --------------------------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT---CHHHHHHHHHH
T ss_pred --------------------------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC---CHHHHHHHHHH
Confidence 24556778898887 56 9999999999998 33 78889999988
Q ss_pred HHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCc
Q 001911 929 LSL----ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIR----VNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 929 ~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~----~g~~~eA~~~~~~~~~~~~~ 986 (997)
|.. ..++++|...|+++.+.| ++.+...|+.+|.. ..+.++|..++++....|.+
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 877 348999999999999865 35568899999885 45899999999998877643
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=3.7e-13 Score=135.43 Aligned_cols=198 Identities=15% Similarity=0.100 Sum_probs=137.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001911 707 PNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMI 786 (997)
Q Consensus 707 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 786 (997)
++...+..+...+.+.|++++|...|++.++.. +.+...+..+...+.+.|++++|...+++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 345556666666777777777777777766653 345566667777777777777777777777665322 556666677
Q ss_pred HHHhcc-----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 001911 787 DGFGKV-----------GKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRK 854 (997)
Q Consensus 787 ~~~~~~-----------g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 854 (997)
..+... |++++|+..+++.++. .| +...+..+..++...|++++|+..+++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------- 148 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---------- 148 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----------
Confidence 777777 8899999999988875 46 57788888889999999999999998876531
Q ss_pred HHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 855 VIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 855 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
.+...+..++.+|...|++++|++.|+++.+..|+ +...+..++.++...|+
T Consensus 149 -------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 149 -------------------------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK---DLDLRVRYASALLLKGK 200 (217)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTC---
T ss_pred -------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccC
Confidence 34456778889999999999999999999888775 77888888999999999
Q ss_pred HHHHHHHHHHHH
Q 001911 935 IDKAFELYVDMI 946 (997)
Q Consensus 935 ~~~A~~~~~~~~ 946 (997)
+++|++.+++.-
T Consensus 201 ~~~A~~~~~~~~ 212 (217)
T 2pl2_A 201 AEEAARAAALEH 212 (217)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 999988887753
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=7.8e-12 Score=131.08 Aligned_cols=224 Identities=12% Similarity=-0.015 Sum_probs=184.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK----DKRLDLALKVISKMLEDSYAPNVVIYT 748 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 748 (997)
+..++..+...|...|++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55667777888888888888888888888843 55677778888888 888899999888888765 677788
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001911 749 EMIDGLIK----VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK----VGKVDKCLELLRQMSSKGCAPNFVTYRVL 820 (997)
Q Consensus 749 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 820 (997)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .|++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 899999999999888864 67788888888888 899999999999988865 56677788
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh--
Q 001911 821 INHCCA----SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK-- 894 (997)
Q Consensus 821 ~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 894 (997)
...|.. .+++++|..++++..+. .+...+..++.+|..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~------------------------------------~~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL------------------------------------KDSPGCFNAGNMYHHGE 196 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT------------------------------------TCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC------------------------------------CCHHHHHHHHHHHHcCC
Confidence 888887 89999999999887653 234567778899998
Q ss_pred --cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 001911 895 --AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 895 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 949 (997)
.+++++|++.++++.+.. +...+..++..|.. .+++++|.+.|+++.+.+
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELE-----NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999999998864 46778888999988 899999999999999854
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=3.4e-13 Score=138.69 Aligned_cols=216 Identities=13% Similarity=0.037 Sum_probs=131.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001911 709 VYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDG 788 (997)
Q Consensus 709 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 788 (997)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 3445555666666677777777777766543 34556666677777777777777777777766532 256667777777
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
+...|++++|++.++++.+.. +.+...+..+...+...|++++|..+++++.+..
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------ 155 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN------------------------ 155 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------------
Confidence 777777777777777777652 2356667777777777777777777777765532
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 869 LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
+.+...+..++..|...|++++|++.++++.+..|. +..++..++.++...|++++|...++++++
T Consensus 156 ----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~- 221 (243)
T 2q7f_A 156 ----------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG---HADAFYNAGVTYAYKENREKALEMLDKAID- 221 (243)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH-
T ss_pred ----------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHc-
Confidence 123445667777777777888888777777766554 566777777777777888888888887777
Q ss_pred CCCCC-HHHHHHHHHHHHh
Q 001911 949 DGSPE-LSTFVHLIKGLIR 966 (997)
Q Consensus 949 ~~~p~-~~~~~~l~~~y~~ 966 (997)
..|+ ..++..++.+...
T Consensus 222 -~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 222 -IQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp -HCTTCHHHHHHHTC----
T ss_pred -cCcchHHHHHHHHHHHhh
Confidence 4564 5555555554433
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=1.9e-12 Score=133.93 Aligned_cols=130 Identities=11% Similarity=-0.053 Sum_probs=58.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001911 710 YTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF 789 (997)
Q Consensus 710 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 789 (997)
..+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.++++.+... .+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 334444444455555555555555544432 22344444444445555555555555554444321 1344444444444
Q ss_pred hccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 841 (997)
...|++++|+++++++...+..| +...+..+..++...|++++|..+++++.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555544444421223 23344444444444444444444444443
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=3.3e-12 Score=132.09 Aligned_cols=200 Identities=16% Similarity=0.052 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINH 823 (997)
Q Consensus 744 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~ 823 (997)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3445555566666666666666666665542 2245556666666666666666666666666542 1245566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 001911 824 CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVAL 902 (997)
Q Consensus 824 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 902 (997)
+...|++++|..+++++.... ..|. ...+..++.+|...|++++|+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDT---------------------------------LYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCT---------------------------------TCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCc---------------------------------cCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666665410 0122 234555666666666666666
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
+.++++.+..|. +...+..++..+...|++++|...++++++ ..|+ ..++..++.+|...|++++|.++++++.
T Consensus 162 ~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 162 EYFEKSLRLNRN---QPSVALEMADLLYKEREYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666655443 455566666666666666666666666665 3343 5556666666666666666666666665
Q ss_pred cc
Q 001911 982 HT 983 (997)
Q Consensus 982 ~~ 983 (997)
..
T Consensus 237 ~~ 238 (252)
T 2ho1_A 237 RL 238 (252)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=6.6e-13 Score=136.49 Aligned_cols=205 Identities=12% Similarity=0.136 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLI 821 (997)
Q Consensus 742 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~ 821 (997)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345677888888999999999999999998863 3378889999999999999999999999999863 33688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001911 822 NHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVA 901 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 901 (997)
..+...|++++|..+++++.+.. +.+...+..++..|...|++++|
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG----------------------------------MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT----------------------------------CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999987643 23455788899999999999999
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 902 LELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
++.++++.+..|. +...+..++.++...|++++|+..++++++ ..|+ ..++..++.+|...|++++|...++++
T Consensus 145 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 145 LPYLQRAVELNEN---DTEARFQFGMCLANEGMLDEALSQFAAVTE--QDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999988765 788999999999999999999999999999 4564 889999999999999999999999998
Q ss_pred hccCCcc
Q 001911 981 CHTDINW 987 (997)
Q Consensus 981 ~~~~~~~ 987 (997)
.......
T Consensus 220 ~~~~p~~ 226 (243)
T 2q7f_A 220 IDIQPDH 226 (243)
T ss_dssp HHHCTTC
T ss_pred HccCcch
Confidence 8765543
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=2.6e-13 Score=152.17 Aligned_cols=285 Identities=15% Similarity=0.077 Sum_probs=197.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 001911 676 VYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNV----YTYGSLIDRLFKDKRLDLALKVISKMLED----SY-APNVVI 746 (997)
Q Consensus 676 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~ 746 (997)
.+..+...+...|++++|+..|+++.+.+.. +. .++..+...|...|++++|...+++.++. +. +.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555666777777777777777766433 22 35666666777777777777777766542 11 123456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCC-----------------HHHHHHHHHH
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEK----GC-YPNVVTYTAMIDGFGKVGK-----------------VDKCLELLRQ 804 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~ 804 (997)
+..+...|...|++++|...++++.+. +- .....++..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 677777788888888888887776643 11 1124467777778888888 8888888877
Q ss_pred HHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 805 MSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 805 m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
..+. +..| ...++..+...|...|++++|..++++..+.. .... ...
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------~~~~--~~~ 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--------------------------REFG--DRA 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------HHHT--CHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--------------------------HhcC--CcH
Confidence 6542 1112 24578888999999999999999998876521 0000 000
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS---AASRNSTLLLIESLSLARKIDKAFELYVDMIRKD----GSP 952 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p 952 (997)
.....+..++.+|...|++++|++.++++....+.. .....++..++.++...|++++|...++++++.. ..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 012367789999999999999999999988654311 1125678889999999999999999999998731 111
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccch
Q 001911 953 E-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQ 989 (997)
Q Consensus 953 ~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~ 989 (997)
. ..++..++.+|...|++++|..++++.......+..
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 1 458889999999999999999999998876655443
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=8.5e-12 Score=126.28 Aligned_cols=198 Identities=11% Similarity=0.025 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 001911 711 TYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFG 790 (997)
Q Consensus 711 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 790 (997)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444455555555555555444432 2234445555555555555555555555555432 124445555555555
Q ss_pred cc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 791 KV-GKVDKCLELLRQMSSKGCAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 791 ~~-g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
.. |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------------ 143 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ------------------------ 143 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------------
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------
Confidence 55 555555555555555222232 4445555555555555555555555544321
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 869 LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSS-NSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+.+...+..++.+|...|++++|.+.++++.+..| . +...+..++..+...|+.++|..+++.+.+
T Consensus 144 ----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 144 ----------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL---QADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 11233445555555555555555555555555443 2 444444444555555555555555555554
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=4.4e-12 Score=128.42 Aligned_cols=204 Identities=11% Similarity=-0.040 Sum_probs=176.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001911 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLI 821 (997)
Q Consensus 742 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~ 821 (997)
.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 456788889999999999999999999999864 3368889999999999999999999999999863 33688899999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHH
Q 001911 822 NHCCAS-GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 822 ~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 899 (997)
..+... |++++|...++++.+.. ..|. ...+..++.+|...|+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADP---------------------------------TYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTST---------------------------------TCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCc---------------------------------CCcchHHHHHHHHHHHHHcCCHH
Confidence 999999 99999999999987611 1233 457788999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-E-LSTFVHLIKGLIRVNKWEEALQLS 977 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~y~~~g~~~eA~~~~ 977 (997)
+|++.++++.+..|. +...+..++.++...|++++|...++++++ ..| + ...+..++..+...|+.++|..++
T Consensus 131 ~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 131 LAEAYLKRSLAAQPQ---FPPAFKELARTKMLAGQLGDADYYFKKYQS--RVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999988765 788899999999999999999999999998 456 4 778889999999999999999999
Q ss_pred HHhhccCC
Q 001911 978 YSICHTDI 985 (997)
Q Consensus 978 ~~~~~~~~ 985 (997)
+.+.....
T Consensus 206 ~~~~~~~p 213 (225)
T 2vq2_A 206 AQLQANFP 213 (225)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 99876543
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=1.1e-12 Score=137.85 Aligned_cols=250 Identities=12% Similarity=-0.022 Sum_probs=195.5
Q ss_pred HhcCChHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 001911 650 CKVHKVREAHDLLDAMSVVGC---EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLD 726 (997)
Q Consensus 650 ~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 726 (997)
...|++++|.+.++++..... +.+..++..+...+...|++++|...|+++.+..+. +..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 345789999999999998632 124677889999999999999999999999998654 7889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001911 727 LALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMS 806 (997)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 806 (997)
+|...++++++.. +.+...+..+...|.+.|++++|.+.|+++.+.. |+......++..+...|++++|+..+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999864 4467889999999999999999999999999853 444444445555677899999999998888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhH
Q 001911 807 SKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAY 885 (997)
Q Consensus 807 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~ 885 (997)
... .++...+ .++..+...++.++|...+++...... . ..|+ ...+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~----~---------------------------~~~~~~~~~ 218 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNT----S---------------------------LAEHLSETN 218 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHH----H---------------------------HHHHHHHHH
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccc----c---------------------------ccccccHHH
Confidence 752 3344444 477778888899999999988754310 0 0011 3567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELY 942 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 942 (997)
..++.+|...|++++|.+.++++....|. + +...+.++...|++++|++.+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~~p~---~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVANNVH---N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCT---T---CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCch---h---HHHHHHHHHHHHHHHhhHHHH
Confidence 88999999999999999999999988754 2 333456777889999998877
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=4.6e-13 Score=149.71 Aligned_cols=305 Identities=13% Similarity=0.082 Sum_probs=230.8
Q ss_pred CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Q 001911 636 EPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGCEPN----NIVYDALIDGFCKVGKLDEAQMVFSKMLEH----GCNP 707 (997)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 707 (997)
......+......+...|++++|...|++..... +.+ ..++..+...|...|++++|...++++.+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4445566777888999999999999999998875 334 357888999999999999999999987653 2111
Q ss_pred -CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHHHcCC--------------------HH
Q 001911 708 -NVYTYGSLIDRLFKDKRLDLALKVISKMLEDS----YA-PNVVIYTEMIDGLIKVGK--------------------TE 761 (997)
Q Consensus 708 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~--------------------~~ 761 (997)
...++..+...+...|++++|...+++..+.. .. ....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 24567788889999999999999999887531 01 114478888899999999 99
Q ss_pred HHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 001911 762 EAYKVMLMMEEK----GCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC-APN----FVTYRVLINHCCASGLLD 831 (997)
Q Consensus 762 ~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~ 831 (997)
+|.+.+.+..+. +..| ...++..+...+...|++++|++.+++..+... .++ ..++..+..++...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887642 1111 234678888899999999999999999875310 122 347888999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 832 EAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 832 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
+|..++++..... ... +..+. ..++..++..|...|++++|++.++++.+
T Consensus 245 ~A~~~~~~al~~~--------------------------~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 245 TASEYYKKTLLLA--------------------------RQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHH--------------------------HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------------------------HhC---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999876421 000 00111 34677899999999999999999999886
Q ss_pred CCCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCH
Q 001911 911 FSSNS---AASRNSTLLLIESLSLARKIDKAFELYVDMIRK----DGSPE-LSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 911 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~y~~~g~~ 970 (997)
..+.. .....++..++.++...|++++|...++++++. +..+. ..++..++.+|...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 53211 112567888999999999999999999998763 11222 56888999999999976
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=3.7e-12 Score=124.46 Aligned_cols=165 Identities=16% Similarity=0.136 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 001911 778 NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVI 856 (997)
Q Consensus 778 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 856 (997)
+...|..+...|...|++++|++.|++.++. .| +..++..+..+|...|++++|...+++.....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------------ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------------ 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------
Confidence 3445555555666666666666666665554 34 45555556666666666666666655554321
Q ss_pred HhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHH
Q 001911 857 EGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKID 936 (997)
Q Consensus 857 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 936 (997)
+.+...+..++..+...+++++|.+.++++....|. +...+..++.++...|+++
T Consensus 70 ----------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---~~~~~~~lg~~~~~~g~~~ 124 (184)
T 3vtx_A 70 ----------------------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV---YADAYYKLGLVYDSMGEHD 124 (184)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHhCCch
Confidence 112334455555566666666666666666555443 5555556666666666666
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 937 KAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 937 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
+|++.|+++++ ..|+ ..++..++.+|.+.|++++|++.+++.++.
T Consensus 125 ~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 125 KAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 66666666665 4453 555666666666666666666666655543
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=1.1e-12 Score=148.90 Aligned_cols=217 Identities=12% Similarity=0.005 Sum_probs=185.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT-EEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELL 802 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 802 (997)
.+++++..++...... +.+...+..+...|...|++ ++|.+.|+++.+.... +...|..+...|...|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3667777777766543 45778888999999999999 9999999999886433 6889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHh
Q 001911 803 RQMSSKGCAPNFVTYRVLINHCCAS---------GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEM 873 (997)
Q Consensus 803 ~~m~~~g~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 873 (997)
++.++. .|+...+..+..+|... |++++|...+++..+..
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------------- 209 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD----------------------------- 209 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-----------------------------
Confidence 999986 58888899999999999 99999999999987643
Q ss_pred ccCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 874 GKTDSVPIVPAYRILIDHYIKA--------GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 874 ~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
+.+...|..++.+|... |++++|++.|+++.+..|....+...|..++.+|...|++++|++.|+++
T Consensus 210 -----p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 210 -----VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23356788999999998 99999999999999987611138899999999999999999999999999
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 946 IRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 946 ~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
++ ..|+ ..++..++.++...|++++|++.+.++
T Consensus 285 l~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 285 AA--LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99 6786 789999999999999999999866544
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.4e-12 Score=145.68 Aligned_cols=284 Identities=15% Similarity=0.101 Sum_probs=218.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 001911 671 EPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPN---VYTYGSLIDRLFKDKRLDLALKVISKMLED----SYAP- 742 (997)
Q Consensus 671 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~- 742 (997)
......+......+...|++++|...|+++.+.++... ..++..+...+...|++++|...+++..+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45566777888899999999999999999999854311 357888899999999999999999987542 2122
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------HHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC-YPN----VVTYTAMIDGFGKVGK--------------------VDK 797 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~ 797 (997)
...++..+...|...|++++|...++++.+... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245788888999999999999999998875311 012 4478888889999999 999
Q ss_pred HHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHH
Q 001911 798 CLELLRQMSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNE 872 (997)
Q Consensus 798 A~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 872 (997)
|++.+++.... +..| ...++..+...+...|++++|...+++..+.. ..
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------~~ 219 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--------------------------KE 219 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH--------------------------HH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--------------------------Hh
Confidence 99999887652 2122 25578889999999999999999999876421 00
Q ss_pred hccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 873 MGKTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS---AASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 873 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
.+..+ ....+..++..|...|++++|++.++++....+.. .....++..++..+...|++++|...++++++.
T Consensus 220 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 220 ---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 00001 12367889999999999999999999988653221 112567888999999999999999999999873
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 949 DG-SPE----LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 949 ~~-~p~----~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
.. .++ ..++..++.+|...|++++|...+++....
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 122 568889999999999999999999987664
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=2.2e-12 Score=139.81 Aligned_cols=279 Identities=15% Similarity=0.108 Sum_probs=193.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHH
Q 001911 677 YDALIDGFCKVGKLDEAQMVFSKMLEHGCNPN----VYTYGSLIDRLFKDKRLDLALKVISKMLED----SYA-PNVVIY 747 (997)
Q Consensus 677 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~ 747 (997)
+......+...|++++|...|+++.+..+. + ...+..+...+...|++++|...+++..+. +.. .....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666677777777777777665432 2 245566666777777777777777665432 111 124566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------HHHHHHHH
Q 001911 748 TEMIDGLIKVGKTEEAYKVMLMMEEKGC-YPN----VVTYTAMIDGFGKVGK--------------------VDKCLELL 802 (997)
Q Consensus 748 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~l~ 802 (997)
..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|++.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777788888888888888887664310 112 3367777888888888 88888888
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCC
Q 001911 803 RQMSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTD 877 (997)
Q Consensus 803 ~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 877 (997)
++.... +..| ...++..+...+...|++++|...+++..+.. ... +
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~---~ 217 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--------------------------KEF---G 217 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------------------HHH---T
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------------------------Hhc---C
Confidence 876542 1112 24578888899999999999999998876421 000 0
Q ss_pred CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----
Q 001911 878 SVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS---AASRNSTLLLIESLSLARKIDKAFELYVDMIRKD---- 949 (997)
Q Consensus 878 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 949 (997)
..+ ....+..++..|...|++++|.+.++++....+.. .....++..++..+...|++++|...++++++..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 001 12367789999999999999999999987653221 1125677889999999999999999999997731
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 950 GSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 950 ~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
..+. ..++..++.+|.+.|++++|...+++......
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1111 45788999999999999999999999877543
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=1.8e-11 Score=119.56 Aligned_cols=170 Identities=15% Similarity=0.099 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLIN 822 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~ 822 (997)
+..+|..+...|.+.|++++|++.|++..+..+. +..++..+...|.+.|++++|+..+++..... ..+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5678888999999999999999999998886443 77888889999999999999999999988762 235778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 001911 823 HCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVAL 902 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 902 (997)
.+...+++++|...+++..... +.+...+..++.+|.+.|++++|+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~----------------------------------~~~~~~~~~lg~~~~~~g~~~~A~ 127 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN----------------------------------TVYADAYYKLGLVYDSMGEHDKAI 127 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----------------------------------ccchHHHHHHHHHHHHhCCchhHH
Confidence 9999999999999998876542 233557888999999999999999
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 903 ELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
+.|+++.+..|. +..+|..++.+|...|++++|++.|+++++ ..|+
T Consensus 128 ~~~~~~l~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 173 (184)
T 3vtx_A 128 EAYEKTISIKPG---FIRAYQSIGLAYEGKGLRDEAVKYFKKALE--KEEK 173 (184)
T ss_dssp HHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTHH
T ss_pred HHHHHHHHhcch---hhhHHHHHHHHHHHCCCHHHHHHHHHHHHh--CCcc
Confidence 999999988776 788999999999999999999999999999 6675
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=3.2e-12 Score=143.28 Aligned_cols=277 Identities=13% Similarity=0.068 Sum_probs=212.7
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHh
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNN----IVYDALIDGFCKVGKLDEAQMVFSKMLEH----GC-NPNVYT 711 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~ 711 (997)
.+..+...+...|++++|...|+++.... +.+. .++..+...|...|++++|...++++.+. +. .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34456668889999999999999999875 3343 47888999999999999999999988764 11 123457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 001911 712 YGSLIDRLFKDKRLDLALKVISKMLED----S-YAPNVVIYTEMIDGLIKVGK-----------------TEEAYKVMLM 769 (997)
Q Consensus 712 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 769 (997)
+..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788889999999999999999987753 1 12234578888999999999 9999999988
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 770 MEEK----GCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC-APN----FVTYRVLINHCCASGLLDEAHNLLEE 839 (997)
Q Consensus 770 m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (997)
..+. +..+ ...++..+...|...|++++|++.+++..+... .++ ..++..+..+|...|++++|..++++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7642 1111 234778888899999999999999999876310 112 34788899999999999999999998
Q ss_pred HHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---C
Q 001911 840 MKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV-PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSN---S 915 (997)
Q Consensus 840 m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~ 915 (997)
..... ... +.. .....+..++.+|...|++++|.+.++++....+. .
T Consensus 289 al~~~--------------------------~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 289 TLALA--------------------------VEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHH--------------------------HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHH--------------------------HHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 76521 000 000 11346778999999999999999999998865321 1
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 916 AASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 916 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.....++..++.+|...|++++|...++++++
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11245788899999999999999999999998
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=2e-11 Score=135.22 Aligned_cols=306 Identities=10% Similarity=0.028 Sum_probs=214.1
Q ss_pred HHhcCChHHHHHHHHHHHhc--CC--CCCHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCCH--
Q 001911 649 LCKVHKVREAHDLLDAMSVV--GC--EPNNIVYDALIDG--FCKVGKLDEAQ-----------MVFSKMLEHGCNPNV-- 709 (997)
Q Consensus 649 ~~~~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~p~~-- 709 (997)
+.+.+++++|..+++++... .. .++...|-.++.. ....++.+.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 46789999999999998653 22 2333444444332 12233444444 666665543211111
Q ss_pred --HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----
Q 001911 710 --YTYGSLIDRLFKDKRLDLALKVISKMLED----SYAP-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK--GCY---- 776 (997)
Q Consensus 710 --~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---- 776 (997)
..+......+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+.+..+. ...
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 11223556678899999999999999864 2111 3467888999999999999999999998763 111
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhh
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAG 851 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 851 (997)
....+++.+...|...|++++|++.+++..+. +-.+ ...++..+..+|...|++++|...+++..+..
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~------- 254 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF------- 254 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 12357888889999999999999999998763 1111 13578889999999999999999999876521
Q ss_pred HHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--CcchhhHHHHHHH
Q 001911 852 YRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS--AASRNSTLLLIES 928 (997)
Q Consensus 852 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~ 928 (997)
.. .+..|. ..++..++.+|...|++++|.+.++++.+..+.. ......+..++..
T Consensus 255 -------------------~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 255 -------------------EE---SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSL 312 (383)
T ss_dssp -------------------HH---TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------------------Hh---hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 011133 3468889999999999999999999988652110 1123335678888
Q ss_pred HHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 929 LSLARK---IDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 929 ~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+...|+ +++|+..+++. +..|+ ..++..|+.+|...|++++|..++++.......
T Consensus 313 ~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 313 YLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 888999 77777777765 34454 568889999999999999999999988765433
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=5.2e-09 Score=121.67 Aligned_cols=429 Identities=12% Similarity=0.064 Sum_probs=253.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHH
Q 001911 503 FLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARK---PSQANELFETM 579 (997)
Q Consensus 503 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~m 579 (997)
+..|+..+..++ -|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++ ++.+..+|++.
T Consensus 52 i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 52 IGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 334444444433 47888888888887788888888888888776 34466677777777777777 88888888888
Q ss_pred HhCC-CCCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHhccCCCchhHHHHHhccCCC-CC-CceeHHHHHHH
Q 001911 580 LSKG-CIPNIVTFTALIDGHCKAGDI--------ERACRIYARMKGNAEISDVDIYFRVLDNNCK-EP-NVYTYGALIDG 648 (997)
Q Consensus 580 ~~~g-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~li~~ 648 (997)
+... ..|++..|...+....+.++. +...++|+.+.... |. .+ +...|...+..
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~v---------------G~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKC---------------AIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHT---------------TTTCSSCHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh---------------CcccccchHHHHHHHHH
Confidence 7653 137777777777665554443 33446666655431 22 23 23466666654
Q ss_pred HH---------hcCChHHHHHHHHHHHhcCCCCCHHHHHH---HHHHHH----------hcCCHHHHHHHHHHHHHc--C
Q 001911 649 LC---------KVHKVREAHDLLDAMSVVGCEPNNIVYDA---LIDGFC----------KVGKLDEAQMVFSKMLEH--G 704 (997)
Q Consensus 649 ~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---li~~~~----------~~g~~~~A~~~~~~m~~~--g 704 (997)
.. ..++++.+.++|++.+......-..+|.. +...+. ...+++.|...+.++... +
T Consensus 195 ~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~ 274 (679)
T 4e6h_A 195 LEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKG 274 (679)
T ss_dssp HHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 33 23457788999999885321111233322 211110 011234444555443221 1
Q ss_pred CC---CC--------------------HHhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 705 CN---PN--------------------VYTYGSLIDRLFKDK-------RLDLALKVISKMLEDSYAPNVVIYTEMIDGL 754 (997)
Q Consensus 705 ~~---p~--------------------~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 754 (997)
+. |. ...|...+..--..+ ..+.+..+|++++.. ++.+...|-..+..+
T Consensus 275 l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 275 LKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQ 353 (679)
T ss_dssp CCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHH
T ss_pred HhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 10 11 123444443322222 134456778888765 355778888888888
Q ss_pred HHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC---------CCC-----------
Q 001911 755 IKVGKTEEAY-KVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC---------APN----------- 813 (997)
Q Consensus 755 ~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~----------- 813 (997)
...|+.++|. ++|++.... ++.+...|..++....+.|++++|.++|++++.... .|+
T Consensus 354 ~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 8889998996 999999875 455777788888888899999999999999886410 142
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH--HHHhH-hHhHHHHHHHHHHhccCCCCCChhhHHHHH
Q 001911 814 -FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRK--VIEGF-SREFIVSLGLVNEMGKTDSVPIVPAYRILI 889 (997)
Q Consensus 814 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 889 (997)
...|...+....+.|..+.|..+|.+..+...+.....|.. .+... .++...|..+++..... ...+...|...+
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~ 511 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHH
Confidence 34688888888889999999999999876411111111111 11111 12245555555544432 111233444555
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 890 DHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
+.....|+.+.|..+|+++....|........|...+.--...|+.+.+.++++++.+ ..|+
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~ 573 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPE 573 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 5566666777777777766665432112344555555555556666667777777666 3454
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=1.5e-11 Score=133.08 Aligned_cols=276 Identities=14% Similarity=0.098 Sum_probs=209.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHhH
Q 001911 642 YGALIDGLCKVHKVREAHDLLDAMSVVGCEPN----NIVYDALIDGFCKVGKLDEAQMVFSKMLEH----GCN-PNVYTY 712 (997)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~ 712 (997)
+......+...|++++|...|+++.... +.+ ...+..+...|...|++++|...++++.+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 4455667889999999999999998875 334 467888999999999999999999987653 211 124577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 001911 713 GSLIDRLFKDKRLDLALKVISKMLEDSY-APN----VVIYTEMIDGLIKVGK--------------------TEEAYKVM 767 (997)
Q Consensus 713 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 767 (997)
..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8888999999999999999998765310 112 3478888899999999 99999999
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 001911 768 LMMEEK----GCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLL 837 (997)
Q Consensus 768 ~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 837 (997)
++..+. +..| ....+..+...+...|++++|++.+++..+. +..+ ...++..+...+...|++++|..++
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887542 1111 2346778888899999999999999998753 1111 1347888999999999999999999
Q ss_pred HHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--
Q 001911 838 EEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSN-- 914 (997)
Q Consensus 838 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 914 (997)
++..... ... +..+ ....+..++.+|...|++++|.+.++++....+.
T Consensus 247 ~~al~~~--------------------------~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 247 KKTLLLA--------------------------RQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHH--------------------------HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--------------------------Hhh---cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 9876421 000 0011 1346778999999999999999999998765321
Q ss_pred -CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 915 -SAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 915 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
......++..++..+...|++++|...++++++
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 111245778899999999999999999999998
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=9.3e-09 Score=119.57 Aligned_cols=437 Identities=10% Similarity=0.031 Sum_probs=270.8
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 001911 466 KAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGL---IEQARNWFD 542 (997)
Q Consensus 466 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~ 542 (997)
+.+..+++.+... +-|..+|..++..+.+.+.++.+..+|+.+...- +.....|..-+..-.+.|. ++.+..+|+
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3444455555443 5678889999998888889999999999988763 4467788888888888888 999999999
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHH---------Hc
Q 001911 543 EMVKEGC-DPNVVTYTALIHAYLKARKP--------SQANELFETMLS-KGC-IP-NIVTFTALIDGHC---------KA 601 (997)
Q Consensus 543 ~m~~~g~-~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~---------~~ 601 (997)
+.+.... .|++..|...+.-..+.++. +.+.++|+..+. .|. .+ +...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9887641 37888888777665555443 334477776554 355 44 3567777765543 23
Q ss_pred CCHHHHHHHHHHHHhccCCCchhHH---HHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh--cCC----C-
Q 001911 602 GDIERACRIYARMKGNAEISDVDIY---FRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSV--VGC----E- 671 (997)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~- 671 (997)
++++.+..+|+++..........++ ...-.. + +..+...++.- ...+++.|...+.++.. .++ +
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~--~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQD--V--NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHH--H--CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh--c--CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 4577888999988753211111111 000000 0 00111111111 11233444455544321 011 0
Q ss_pred ----------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 001911 672 ----------P-----N---NIVYDALIDGFCKVG-------KLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLD 726 (997)
Q Consensus 672 ----------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 726 (997)
| + ...|...+.---..+ ..+.+..+|++++..-+. ....|...+..+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHH
Confidence 1 0 134444444322222 123456678877776433 6777777777777888888
Q ss_pred HHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHH
Q 001911 727 LAL-KVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC---------YPN------------VVTYTA 784 (997)
Q Consensus 727 ~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~~~~~ 784 (997)
+|. .+|++.... ++.+...|-..+...-+.|+++.|.++|+++.+... .|+ ...|..
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 886 888888764 345666677777778888888888888888775310 131 235777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHh--
Q 001911 785 MIDGFGKVGKVDKCLELLRQMSSK-GCAPNFVTYRVLINHCCAS-GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFS-- 860 (997)
Q Consensus 785 li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~-- 860 (997)
.+....+.|..+.|..+|.+..+. + .+....|...+..-.+. ++.+.|.++|+...+. +|.....+...++-..
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 777777788888888888888775 2 12234444333333344 4488888888888776 3444444444444332
Q ss_pred HhHHHHHHHHHHhccCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 001911 861 REFIVSLGLVNEMGKTDSVP--IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 861 ~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 914 (997)
.+...|-.++++.......+ ....|...+..-.+.|+.+.+..+.+++.+..|.
T Consensus 518 ~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 35667777788776554322 2457888888888999999999999999998764
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=1.7e-11 Score=144.52 Aligned_cols=164 Identities=15% Similarity=0.145 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 001911 778 NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVI 856 (997)
Q Consensus 778 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 856 (997)
+...|+.|...|.+.|++++|++.|++.++. .| +..+|..+..+|.+.|++++|+..+++..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------------ 73 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------------ 73 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 3567777888888888888888888888775 45 47778888888888888888888888776542
Q ss_pred HhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCH
Q 001911 857 EGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKI 935 (997)
Q Consensus 857 ~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 935 (997)
|+ ..+|..++.+|...|++++|++.|+++.+..|+ +..+|..++.+|...|++
T Consensus 74 -----------------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~---~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 74 -----------------------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA---FADAHSNLASIHKDSGNI 127 (723)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCH
T ss_pred -----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCH
Confidence 43 457788888888888888888888888887765 777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 936 DKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 936 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
++|++.|+++++ +.|+ ..++..|+.+|...|+|++|.+.++++.+.
T Consensus 128 ~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 128 PEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 888888888888 6786 778888888888888888888888777654
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=2.2e-11 Score=138.33 Aligned_cols=216 Identities=9% Similarity=-0.027 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001911 690 LDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRL-DLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVML 768 (997)
Q Consensus 690 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 768 (997)
+++++..++....... .+...+..+...+...|++ ++|++.|++.++.. +.+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555566665554432 3666777777778888888 88888888877653 3457788888888888899999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc--------CCH
Q 001911 769 MMEEKGCYPNVVTYTAMIDGFGKV---------GKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCAS--------GLL 830 (997)
Q Consensus 769 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~--------g~~ 830 (997)
++.+. .|+...+..+...+... |++++|++.|++.++. .| +...|..+..+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 88875 46678888888888888 9999999999999886 45 688899999999988 999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001911 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTS 910 (997)
Q Consensus 831 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 910 (997)
++|...+++..+.. | ....+...|..++.+|...|++++|++.|+++.+
T Consensus 238 ~~A~~~~~~al~~~-p------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 238 QQALSAYAQAEKVD-R------------------------------KASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHC-G------------------------------GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-C------------------------------CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999987642 0 0002456889999999999999999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 911 FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 911 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
..|. +..++..++.++...|++++|++.+.++
T Consensus 287 l~p~---~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 287 LDPA---WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HCTT---CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8876 7888999999999999999999876554
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=3.8e-10 Score=120.36 Aligned_cols=219 Identities=11% Similarity=0.008 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 691 DEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK-------DKRL-------DLALKVISKMLEDSYAPNVVIYTEMIDGLIK 756 (997)
Q Consensus 691 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 756 (997)
++|...|+++++..+. +...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4555666666554322 44555555554432 3443 5555555555542112233455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 001911 757 VGKTEEAYKVMLMMEEKGCYP-NVV-TYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCC-ASGLLDEA 833 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g~~p-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~A 833 (997)
.|++++|.++|+++.+. .| +.. .|..++..+.+.|++++|..+|++.++.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555543 22 222 45555555555555555555555555532 112333332222211 24555555
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 001911 834 HNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 834 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 913 (997)
..+|++..+.. +.+...|..++..+.+.|+.++|..+|+++...++
T Consensus 189 ~~~~~~al~~~----------------------------------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 189 FKIFELGLKKY----------------------------------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHHHHHHH----------------------------------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhC----------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 55555544321 11233455555555555555555555555555311
Q ss_pred CC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 914 NS-AASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 914 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.. ......|..++..+...|++++|..+++++.+
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 01334455555555555555555555555555
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=3.5e-11 Score=128.70 Aligned_cols=215 Identities=15% Similarity=0.090 Sum_probs=156.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------C
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-------GCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK------G 809 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 809 (997)
+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777777888888888888888877762 12224556777788888888888888888887753 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHH
Q 001911 810 CAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRIL 888 (997)
Q Consensus 810 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 888 (997)
-.| ...++..+...|...|++++|..+++++.+.. .+............+..+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR--------------------------EKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--------------------------HHHHCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH--------------------------HHhcCCCChHHHHHHHHH
Confidence 223 36678889999999999999999998876521 011000111123467788
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcC-----CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------
Q 001911 889 IDHYIKAGRLEVALELHEEMTSF-----SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD-------------- 949 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------- 949 (997)
+..|...|++++|++.++++.+. .+.......++..++.++...|++++|...++++++..
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 89999999999999999988764 11112355678888999999999999999999988621
Q ss_pred ---------------------------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 950 ---------------------------------GSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 950 ---------------------------------~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
..|+ ..++..++.+|.+.|++++|.+++++..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1243 578999999999999999999999987653
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=8e-10 Score=117.81 Aligned_cols=238 Identities=9% Similarity=0.008 Sum_probs=169.0
Q ss_pred CceeHHHHHHHHHhc----CCh----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHH
Q 001911 638 NVYTYGALIDGLCKV----HKV----REAHDLLDAMSVVGCEPNNIVYDALIDGFCK-------VGKL-------DEAQM 695 (997)
Q Consensus 638 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~ 695 (997)
+...|...+..-.+. ++. ++|..+|++..... +.+...|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 344566666654332 233 67778888887754 5667777777777653 4775 78888
Q ss_pred HHHHHHH-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001911 696 VFSKMLE-HGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPN-VV-IYTEMIDGLIKVGKTEEAYKVMLMMEE 772 (997)
Q Consensus 696 ~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 772 (997)
+|++.++ ..+. +...|..++..+.+.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|.++|+++.+
T Consensus 86 ~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 86 IYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888887 3432 5567888888888888888888888888874 343 33 788888888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 001911 773 KGCYPNVVTYTAMIDGFG-KVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVA 850 (997)
Q Consensus 773 ~g~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 850 (997)
... ++...|...+.... ..|++++|.++|++.++. .| +...|..++..+.+.|++++|..+|++.....
T Consensus 163 ~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------ 233 (308)
T 2ond_A 163 DAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG------ 233 (308)
T ss_dssp STT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS------
T ss_pred cCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc------
Confidence 532 34445544433322 368888888888888775 34 57778888888888888888888888876631
Q ss_pred hHHHHHHhHhHhHHHHHHHHHHhccCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 001911 851 GYRKVIEGFSREFIVSLGLVNEMGKTDSVP--IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 851 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 914 (997)
...| ....|..++..+.+.|+.++|..+++++.+..|.
T Consensus 234 --------------------------~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 234 --------------------------SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp --------------------------SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred --------------------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 0123 3457777888888888888888888888887765
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=9.8e-12 Score=133.07 Aligned_cols=247 Identities=13% Similarity=0.006 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-C
Q 001911 675 IVYDALIDGFCKVGKLDEAQMVFSKMLEH-------GCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLED------S-Y 740 (997)
Q Consensus 675 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~ 740 (997)
.++..+...+...|++++|..+++++.+. .......++..+...+...|++++|...++++++. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33444444455555555555555544442 11112334445555555555555555555555432 1 1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----
Q 001911 741 APNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK------GCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----- 808 (997)
Q Consensus 741 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 808 (997)
+.....+..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|+++++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 223456667777777777777777777776653 1112 3456777778888888888888888887763
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC----Ch
Q 001911 809 -GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP----IV 882 (997)
Q Consensus 809 -g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~ 882 (997)
+..| ...++..+..+|...|++++|..+++++.+.... ..+. ... ...+ ..
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~-----------~~~--~~~~~~~~~~ 244 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE----------REFG-----------SVD--DENKPIWMHA 244 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------HHHC-------------------CCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------hcCC-----------CCC--cchHHHHHHH
Confidence 2233 3567888889999999999999999887652100 0000 000 0000 01
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..+..++..+...+.+.+|...++......|. ...++..++.+|...|++++|.+.++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPT---VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCch---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12333445556667777777888887765443 778889999999999999999999999987
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=2.2e-10 Score=126.78 Aligned_cols=305 Identities=10% Similarity=0.026 Sum_probs=210.9
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHH--HHhcCChHHHH-----------HHHHH
Q 001911 598 HCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDG--LCKVHKVREAH-----------DLLDA 664 (997)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~ 664 (997)
+.+.+++++|..+++++....... ...++...|-.++.. ....+.++.+. +.++.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~------------~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQM------------EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTS------------CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 356889999999988886532100 012223333333321 11223333344 66666
Q ss_pred HHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 665 MSVVGCEPN----NIVYDALIDGFCKVGKLDEAQMVFSKMLEH----GCNP-NVYTYGSLIDRLFKDKRLDLALKVISKM 735 (997)
Q Consensus 665 m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 735 (997)
+.....+.+ ...+......+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++.
T Consensus 90 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 544221111 111223566778899999999999999874 1111 3457888999999999999999999998
Q ss_pred HhC----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHH
Q 001911 736 LED----S--YAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC-YPN----VVTYTAMIDGFGKVGKVDKCLELLRQ 804 (997)
Q Consensus 736 ~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~ 804 (997)
.+. + ......+++.+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|++.+++
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 753 1 011245788899999999999999999998875311 112 24788899999999999999999999
Q ss_pred HHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 805 MSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 805 m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
..+. +..| ...++..+..++...|++++|..++++..... .+. +..
T Consensus 250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------------------~~~---~~~ 300 (383)
T 3ulq_A 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS--------------------------QKA---GDV 300 (383)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------HHH---TCH
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------------------HHc---CCH
Confidence 8872 3224 46789999999999999999999999876421 000 001
Q ss_pred CChhhHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 880 PIVPAYRILIDHYIKAGR---LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.....+..++..|...|+ +++|+..+++.... ......+..++..|...|++++|...++++++
T Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~----~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 301 IYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY----ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112235678889999999 88888888887432 12556788899999999999999999999987
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=4e-10 Score=124.30 Aligned_cols=315 Identities=11% Similarity=0.012 Sum_probs=215.6
Q ss_pred CCCceeHHHHHHHH--HhcCChHHHHHHHHHHHhc--CC--CCCHHHHHHHHHHH--HhcCCHHHHH---------HHHH
Q 001911 636 EPNVYTYGALIDGL--CKVHKVREAHDLLDAMSVV--GC--EPNNIVYDALIDGF--CKVGKLDEAQ---------MVFS 698 (997)
Q Consensus 636 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~li~~~--~~~g~~~~A~---------~~~~ 698 (997)
.|+..+-+.|-+.| .+.+++++|.++++++... .. ..+...|-.++..- ...+....+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 44455555566666 7899999999999987652 22 22334444444321 1112222222 5555
Q ss_pred HHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001911 699 KMLEHGCNPNV----YTYGSLIDRLFKDKRLDLALKVISKMLEDSY-AP----NVVIYTEMIDGLIKVGKTEEAYKVMLM 769 (997)
Q Consensus 699 ~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 769 (997)
.+.......+. ..+......+...|++++|+..+++..+... .+ ...++..+...|...|++++|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432111111 1233345567789999999999999876411 12 245788899999999999999999998
Q ss_pred HHHC----CC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001911 770 MEEK----GC-YP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLE 838 (997)
Q Consensus 770 m~~~----g~-~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 838 (997)
..+. +- .+ ...+++.+...|...|++++|++.|++..+. +-.+ ...++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8753 11 11 2457788899999999999999999998762 1111 24578889999999999999999999
Q ss_pred HHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--C
Q 001911 839 EMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSN--S 915 (997)
Q Consensus 839 ~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~ 915 (997)
+..... ... + .|. ..++..++..|.+.|++++|.+.++++.+..+. .
T Consensus 247 ~al~~~--------------------------~~~---~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 247 KAAKVS--------------------------REK---V-PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp HHHHHH--------------------------HHH---C-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHH--------------------------Hhh---C-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 876521 000 1 122 446788999999999999999999999875322 1
Q ss_pred CcchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 916 AASRNSTLLLIESLSLARK---IDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 916 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
......+..+...+...++ +++|+..+++ .+..|+ ...+..++.+|...|++++|...+++..+.
T Consensus 297 ~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2234455667777777888 7888887776 233454 567889999999999999999999987654
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=5.2e-10 Score=113.40 Aligned_cols=162 Identities=12% Similarity=-0.065 Sum_probs=126.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 001911 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVL 820 (997)
Q Consensus 742 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l 820 (997)
.|+..+..+...+...|++++|.+.|++..+....++...+..+..++...|++++|++.+++..+. .| +...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 4567788888888899999999999999888755467777777888899999999999999999886 56 46788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEV 900 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 900 (997)
..+|...|++++|...+++..+.. |.+...... -...|..++..+...|++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------------------------~~~~~~~~g~~~~~~~~~~~ 135 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKL--------------------------YAIYYLKEGQKFQQAGNIEK 135 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH--------------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHH--------------------------HHHHHHHHhHHHHHhccHHH
Confidence 999999999999999999887643 111000000 00357788899999999999
Q ss_pred HHHHHHHHhcCCCCCCc--chhhHHHHHHHHHhcCCH
Q 001911 901 ALELHEEMTSFSSNSAA--SRNSTLLLIESLSLARKI 935 (997)
Q Consensus 901 A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 935 (997)
|++.++++.+..| . +...+..++.++...|+.
T Consensus 136 A~~~~~~al~~~p---~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 136 AEENYKHATDVTS---KKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHTTSSC---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC---CcccHHHHHHHHHHHHHHHHH
Confidence 9999999998764 3 467888888888777665
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=2.5e-10 Score=111.14 Aligned_cols=165 Identities=18% Similarity=0.136 Sum_probs=122.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhH
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGF 859 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 859 (997)
..+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|..+++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------- 72 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 345566667777788888888877776642 2356777777888888888888888887766532
Q ss_pred hHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHH
Q 001911 860 SREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAF 939 (997)
Q Consensus 860 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 939 (997)
+.+...+..++..|...|++++|.+.++++....|. +...+..++..+...|++++|.
T Consensus 73 -------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 73 -------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI---NFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH---hHHHHHHHHHHHHHcCcHHHHH
Confidence 223456677788888888888888888888776654 6677778888888888888888
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 940 ELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 940 ~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
..++++++ ..|+ ..++..++.+|...|++++|...++++....
T Consensus 131 ~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 131 DSFKIALG--LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--cCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 88888887 3454 6778888888888888888888888776543
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=2.5e-10 Score=115.73 Aligned_cols=170 Identities=11% Similarity=-0.087 Sum_probs=148.3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVI 856 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 856 (997)
.|+..+......+...|++++|++.|++.++....++...+..+..++...|++++|+..+++.....
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------------ 72 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN------------ 72 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------------
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------------
Confidence 36788888999999999999999999999987533678888889999999999999999999987643
Q ss_pred HhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcch-------hhHHHHHHH
Q 001911 857 EGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASR-------NSTLLLIES 928 (997)
Q Consensus 857 ~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~l~~~ 928 (997)
|+ ...+..++.+|...|++++|++.++++.+..|. +. .+|..++..
T Consensus 73 -----------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~g~~ 126 (228)
T 4i17_A 73 -----------------------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG---NATIEKLYAIYYLKEGQK 126 (228)
T ss_dssp -----------------------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHhHH
Confidence 44 457888999999999999999999999998775 55 568889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCH---------------------------HHHHHHHH
Q 001911 929 LSLARKIDKAFELYVDMIRKDGSPE---LSTFVHLIKGLIRVNKW---------------------------EEALQLSY 978 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~y~~~g~~---------------------------~eA~~~~~ 978 (997)
+...|++++|+..|+++++ ..|+ ..++..++.+|...|+. ++|+..++
T Consensus 127 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 204 (228)
T 4i17_A 127 FQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLG 204 (228)
T ss_dssp HHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 6786 47899999999999998 89999999
Q ss_pred HhhccCCc
Q 001911 979 SICHTDIN 986 (997)
Q Consensus 979 ~~~~~~~~ 986 (997)
+..+....
T Consensus 205 ~a~~l~p~ 212 (228)
T 4i17_A 205 EAVTLSPN 212 (228)
T ss_dssp HHHHHCTT
T ss_pred HHhhcCCC
Confidence 88876554
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=2.4e-09 Score=117.86 Aligned_cols=273 Identities=12% Similarity=0.015 Sum_probs=185.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHH
Q 001911 680 LIDGFCKVGKLDEAQMVFSKMLEHGCNPNVY----TYGSLIDRLFKDKRLDLALKVISKMLEDSY-APN----VVIYTEM 750 (997)
Q Consensus 680 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l 750 (997)
....+...|++++|...+++........+.. ++..+...+...|++++|...+++..+... ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777777777776654322222 445556667777888888887777654210 011 2335667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--C--CHHHHHH
Q 001911 751 IDGLIKVGKTEEAYKVMLMMEEK----GCY--P-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCA--P--NFVTYRV 819 (997)
Q Consensus 751 i~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~~~~~ 819 (997)
...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.....-. + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 77888889999999888887653 222 2 2345666778888999999999999988763211 1 2457888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhH----HHHHHHHHhc
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAY----RILIDHYIKA 895 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~ 895 (997)
+...+...|++++|..++++........ + .| .... ..++..+...
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~-----------------------------~-~~-~~~~~~~~~~~~~~~~~~ 228 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNG-----------------------------K-YH-SDWISNANKVRVIYWQMT 228 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTS-----------------------------C-CC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcc-----------------------------C-cc-hhHHHHHHHHHHHHHHHC
Confidence 8899999999999999999876431000 0 01 1111 1234557789
Q ss_pred CCHHHHHHHHHHHhcCCCCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCC
Q 001911 896 GRLEVALELHEEMTSFSSNS-AASRNSTLLLIESLSLARKIDKAFELYVDMIRK----DGSPE-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~y~~~g~ 969 (997)
|++++|.+.++++....+.. ......+..++..+...|++++|...++++.+. |..++ ..++..++.+|...|+
T Consensus 229 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 308 (373)
T 1hz4_A 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308 (373)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence 99999999999988754431 112335677888899999999999999988662 11112 2478889999999999
Q ss_pred HHHHHHHHHHhhcc
Q 001911 970 WEEALQLSYSICHT 983 (997)
Q Consensus 970 ~~eA~~~~~~~~~~ 983 (997)
+++|...+++....
T Consensus 309 ~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 309 KSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=2.8e-10 Score=134.12 Aligned_cols=165 Identities=13% Similarity=0.039 Sum_probs=142.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 001911 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVL 820 (997)
Q Consensus 742 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l 820 (997)
.+...|+.|...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|++.|++.++. .| +...|..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34678889999999999999999999998886433 6788889999999999999999999999885 56 57889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHH
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 899 (997)
..+|...|++++|++.+++..+.. |+ ..+|+.++.+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-----------------------------------P~~~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-----------------------------------PAFADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----------------------------------CCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999998877642 43 557888999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+|++.|+++++..|+ +..++..++.++...|++++|.+.++++++
T Consensus 129 eAi~~~~~Al~l~P~---~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 129 EAIASYRTALKLKPD---FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999998876 788999999999999999999999988876
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=7.6e-10 Score=107.69 Aligned_cols=164 Identities=16% Similarity=0.077 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001911 745 VIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHC 824 (997)
Q Consensus 745 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~ 824 (997)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555666666677777777776665542 2255666666667777777777777777766642 22566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001911 825 CASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 825 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
...|++++|..+++++.... +.+...+..++..|...|++++|++.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN----------------------------------PINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC----------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 77777777777777665432 12344566677777777777777777
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++++.+..|. +...+..++.++...|++++|...++++++
T Consensus 133 ~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPN---EGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777766543 566777777777777777777777777766
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=3.6e-10 Score=118.78 Aligned_cols=201 Identities=14% Similarity=0.042 Sum_probs=142.9
Q ss_pred cCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHH
Q 001911 757 VGKTEEAYKVMLMMEE-------KGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK------GCAP-NFVTYRVLIN 822 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~~~~~l~~ 822 (997)
.|++++|..++++..+ ...+....++..+...|...|++++|+..+++..+. +-.| ...++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4555555555555443 111223556777778888888888888888887653 2223 3667888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 001911 823 HCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVAL 902 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 902 (997)
+|...|++++|..++++..... .+......+.....+..++..|...|++++|+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~--------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIR--------------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHH--------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHH--------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998876421 11111111112346788899999999999999
Q ss_pred HHHHHHhcC-----CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------------------
Q 001911 903 ELHEEMTSF-----SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD---------------------------- 949 (997)
Q Consensus 903 ~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------- 949 (997)
+.++++.+. .+..+....++..++.++...|++++|...++++++..
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 999998775 11222356788889999999999999999999988630
Q ss_pred -------------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 950 -------------------GSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 950 -------------------~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
..|+ ..++..++.+|...|++++|..++++.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1233 568889999999999999999999987653
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=3.1e-09 Score=117.11 Aligned_cols=235 Identities=7% Similarity=-0.053 Sum_probs=176.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhcCC--
Q 001911 593 ALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVYTYGALIDGLCKVHKVREAHDLLDAMSVVGC-- 670 (997)
Q Consensus 593 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 670 (997)
.....+...|++++|...|+++........ ..+....++..+...|...|++++|...+.+......
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVS-----------DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCC-----------ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 344566789999999999999876431100 0011245678888899999999999999988765311
Q ss_pred ---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 001911 671 ---E-PNNIVYDALIDGFCKVGKLDEAQMVFSKMLEH----GCN-PNVYTYGSLIDRLFKDKRLDLALKVISKMLE---- 737 (997)
Q Consensus 671 ---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 737 (997)
. ....+++.+...|...|++++|.+.|.+..+. +.. ....++..+...|...|++++|...+++..+
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 1 12457888999999999999999999988764 111 1234677889999999999999999999887
Q ss_pred -CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhCC
Q 001911 738 -DSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKG----CYPNVVTYTAMIDGFGKVGK---VDKCLELLRQMSSKG 809 (997)
Q Consensus 738 -~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g 809 (997)
.. +....++..+...|.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|+.++++. +
T Consensus 255 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~ 330 (378)
T 3q15_A 255 KVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---N 330 (378)
T ss_dssp HCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---T
T ss_pred hCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---C
Confidence 43 3336788889999999999999999999988742 12223456666667778888 88888887762 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 810 CAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 810 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
..| ....+..+...|...|++++|..++++..+
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233 345677899999999999999999998764
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=5.2e-09 Score=115.16 Aligned_cols=275 Identities=14% Similarity=0.042 Sum_probs=196.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH----HhHH
Q 001911 643 GALIDGLCKVHKVREAHDLLDAMSVVGCEPNN----IVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN-PNV----YTYG 713 (997)
Q Consensus 643 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~ 713 (997)
......+...|++++|...+++........+. .+++.+...+...|++++|...+++..+.... ++. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33445667899999999999998875423333 25667778889999999999999988764211 122 3356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHH
Q 001911 714 SLIDRLFKDKRLDLALKVISKMLED----SYA--P-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY----PNVVTY 782 (997)
Q Consensus 714 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~ 782 (997)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6778889999999999999988753 221 2 2356677888999999999999999998764221 124567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 001911 783 TAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-FVTYR-----VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVI 856 (997)
Q Consensus 783 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 856 (997)
..+...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|..++++........
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~--------- 248 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN--------- 248 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc---------
Confidence 7888889999999999999999875311221 11122 23345779999999999998875432000
Q ss_pred HhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--Ccc-hhhHHHHHHHHHhcC
Q 001911 857 EGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS--AAS-RNSTLLLIESLSLAR 933 (997)
Q Consensus 857 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~g 933 (997)
.......+..++..+...|++++|.+.++++....+.. ... ...+..++.++...|
T Consensus 249 ---------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 249 ---------------------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp ---------------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 00111245678899999999999999999987542110 112 236677888899999
Q ss_pred CHHHHHHHHHHHHH
Q 001911 934 KIDKAFELYVDMIR 947 (997)
Q Consensus 934 ~~~~A~~~~~~~~~ 947 (997)
++++|...++++.+
T Consensus 308 ~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 308 RKSDAQRVLLDALK 321 (373)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999876
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=1.3e-09 Score=112.99 Aligned_cols=214 Identities=10% Similarity=0.004 Sum_probs=155.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC-HHH
Q 001911 742 PNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPN---VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC-APN-FVT 816 (997)
Q Consensus 742 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~~ 816 (997)
.+...+-.+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|+..|++.++... .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34566667777888888888888888888875322 3 56777788888899999999999999887521 122 556
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHH
Q 001911 817 YRVLINHCCA--------SGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRIL 888 (997)
Q Consensus 817 ~~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 888 (997)
+..+..++.. .|++++|...++++.... |......... ..+..+.. -....+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~------------~~~~~~~~----~~~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDAT------------QKIRELRA----KLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHH------------HHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHH------------HHHHHHHH----HHHHHHHHH
Confidence 7778888888 999999999999988764 2222111111 00000000 001125678
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC----H
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA----------RKIDKAFELYVDMIRKDGSPE----L 954 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~----~ 954 (997)
+.+|...|++++|+..|+++.+..|........+..++.+|... |++++|+..|+++++ ..|+ .
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~ 232 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDSPLLR 232 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTCTHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCChHHH
Confidence 99999999999999999999988776555677889999999866 899999999999999 5676 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHH
Q 001911 955 STFVHLIKGLIRVNKWEEALQ 975 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~ 975 (997)
.+...+..++.+.|+++++..
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHhhhhhH
Confidence 467778888888777766543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=2.1e-09 Score=113.46 Aligned_cols=215 Identities=13% Similarity=0.011 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHH
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK----GCYPN-VVTYTAMIDGFGKVGKVDKC 798 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A 798 (997)
++++|...|++. +..|...|++++|.+.|.+..+. |-+++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467777776665 33466678888888888776643 21111 45777888888888888888
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHH
Q 001911 799 LELLRQMSSK----GCAP-NFVTYRVLINHCCAS-GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNE 872 (997)
Q Consensus 799 ~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 872 (997)
+..+++.++. |-.+ -..++..+..+|... |++++|+..+++..+.. ..
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--------------------------~~ 150 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--------------------------AQ 150 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--------------------------HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--------------------------Hh
Confidence 8888887653 1111 145788899999996 99999999999876531 00
Q ss_pred hccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 873 MGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAAS----RNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 873 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
.+..+. ..++..++..|...|++++|++.|+++.+..|..... ...+..++.++...|++++|+..|+++++
T Consensus 151 ---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 151 ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred ---CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 000011 2357889999999999999999999999877653211 12577888999999999999999999988
Q ss_pred cCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHhhccC
Q 001911 948 KDGSPEL------STFVHLIKGLI--RVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 948 ~~~~p~~------~~~~~l~~~y~--~~g~~~eA~~~~~~~~~~~ 984 (997)
+.|+. ..+..++..|. ..+++++|+..++++...+
T Consensus 228 --l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 228 --EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp --C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred --hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence 66752 13455677665 5678999999998876644
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=5.1e-09 Score=108.56 Aligned_cols=172 Identities=15% Similarity=0.069 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhH
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-N---FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGY 852 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 852 (997)
.+...+..+...+.+.|++++|+..|+++++. .| + ...+..+..+|...|++++|...+++...... .
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-~----- 84 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-I----- 84 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T-----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-C-----
Confidence 35677778888899999999999999999986 35 3 67889999999999999999999999877531 0
Q ss_pred HHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHh--------cCCHHHHHHHHHHHhcCCCCCCcchhhH-
Q 001911 853 RKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIK--------AGRLEVALELHEEMTSFSSNSAASRNST- 922 (997)
Q Consensus 853 ~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~- 922 (997)
.|. ..++..++.++.. .|++++|++.|+++.+..|+........
T Consensus 85 --------------------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 138 (261)
T 3qky_A 85 --------------------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ 138 (261)
T ss_dssp --------------------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred --------------------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH
Confidence 122 3467789999999 9999999999999999887633233332
Q ss_pred -------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhc----------CCHHHHHH
Q 001911 923 -------------LLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHLIKGLIRV----------NKWEEALQ 975 (997)
Q Consensus 923 -------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~y~~~----------g~~~eA~~ 975 (997)
..++.+|...|++++|+..|+++++ ..|+ ..++..++.+|... |++++|+.
T Consensus 139 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 139 KIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 6779999999999999999999998 4564 46899999999977 99999999
Q ss_pred HHHHhhccC
Q 001911 976 LSYSICHTD 984 (997)
Q Consensus 976 ~~~~~~~~~ 984 (997)
.++++....
T Consensus 217 ~~~~~~~~~ 225 (261)
T 3qky_A 217 LYERLLQIF 225 (261)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
Confidence 999987744
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=6.7e-09 Score=104.79 Aligned_cols=95 Identities=9% Similarity=0.033 Sum_probs=72.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhh--------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSAASRNS--------------TLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
+...+...|++++|+..|+++.+..|++..-... ...++..+...|++++|+..|+++++ ..|+
T Consensus 102 ~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~ 179 (225)
T 2yhc_A 102 VDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPD 179 (225)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTT
T ss_pred cchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcC
Confidence 4445556789999999999999988764321111 14567788899999999999999999 5575
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 954 ----LSTFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 954 ----~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
..++..++.+|.+.|++++|++.++.+...+
T Consensus 180 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 180 TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 2689999999999999999999999887643
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=3.6e-08 Score=101.26 Aligned_cols=248 Identities=9% Similarity=0.013 Sum_probs=174.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 001911 647 DGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLD 726 (997)
Q Consensus 647 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 726 (997)
+-..-.|++..++.-...+ ..........-+.++|...|++... ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3445578998888743332 2122233444566788888887642 12334444444444433 322
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001911 727 LALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGC-YPNVVTYTAMIDGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 805 (997)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 788888887765 45666667888999999999999999999877654 225677788889999999999999999999
Q ss_pred HhCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccC
Q 001911 806 SSKGCAP-----NFVTYRVLINH--CCASG--LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKT 876 (997)
Q Consensus 806 ~~~g~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 876 (997)
.+. .| +..+...++.+ ....| ++.+|..+|+++.+.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-------------------------------- 208 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-------------------------------- 208 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--------------------------------
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--------------------------------
Confidence 885 57 35666666666 33344 9999999999987653
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 877 DSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS-------AASRNSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 877 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
|+......+.+++...|++++|.+.++.+.+..|.. +.++.++..++......|+ +|.++++++.+
T Consensus 209 ---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-- 281 (310)
T 3mv2_B 209 ---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK-- 281 (310)
T ss_dssp ---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--
T ss_pred ---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--
Confidence 442222334448999999999999999877652110 1378888777777777787 89999999999
Q ss_pred CCCC
Q 001911 950 GSPE 953 (997)
Q Consensus 950 ~~p~ 953 (997)
..|+
T Consensus 282 ~~P~ 285 (310)
T 3mv2_B 282 LDHE 285 (310)
T ss_dssp TTCC
T ss_pred hCCC
Confidence 7787
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=3e-09 Score=105.73 Aligned_cols=130 Identities=12% Similarity=0.005 Sum_probs=105.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 001911 819 VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL 898 (997)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 898 (997)
.+..+|...|++++|...+++..+.. +.+...+..++.+|...|++
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~lg~~~~~~g~~ 104 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA----------------------------------PNNVDCLEACAEMQVCRGQE 104 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC----------------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 38899999999999999999987753 23456888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK--IDKAFELYVDMIRKDGSPELSTFVHLIKGLIRVNKWEEALQL 976 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~g~~~eA~~~ 976 (997)
++|++.|+++.+..|+ +..++..++.+|...|+ .+.+...++++.. ..|...++..++.++...|++++|+..
T Consensus 105 ~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~ 179 (208)
T 3urz_A 105 KDALRMYEKILQLEAD---NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNS 179 (208)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999876 88999999999877654 5566777777654 233345677889999999999999999
Q ss_pred HHHhhccCCcc
Q 001911 977 SYSICHTDINW 987 (997)
Q Consensus 977 ~~~~~~~~~~~ 987 (997)
+++.+......
T Consensus 180 ~~~al~l~P~~ 190 (208)
T 3urz_A 180 LQKVILRFPST 190 (208)
T ss_dssp HHHHTTTSCCH
T ss_pred HHHHHHhCCCH
Confidence 99998876553
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=6.2e-10 Score=103.97 Aligned_cols=144 Identities=10% Similarity=-0.019 Sum_probs=114.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhH
Q 001911 785 MIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREF 863 (997)
Q Consensus 785 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 863 (997)
|...+...|++++|+..+++.... .| +...+..+...|...|++++|+..+++..+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~------------------- 61 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ------------------- 61 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Confidence 344566778899999999888764 45 35567788899999999999999999887643
Q ss_pred HHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHH-H
Q 001911 864 IVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFEL-Y 942 (997)
Q Consensus 864 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~ 942 (997)
+.+..+|..++.+|...|++++|+..|+++.+..|. +..++..++.+|...|++++|.+. +
T Consensus 62 ---------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 62 ---------------ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT---QKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp ---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 223568888999999999999999999999988876 788899999999999998776655 5
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 001911 943 VDMIRKDGSPE-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 943 ~~~~~~~~~p~-~~~~~~l~~~y~~~g~ 969 (997)
+++++ +.|+ +.++...+.++...|+
T Consensus 124 ~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 124 ERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 88888 6785 7888888888888875
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=4.1e-09 Score=110.58 Aligned_cols=209 Identities=13% Similarity=-0.026 Sum_probs=125.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC--
Q 001911 710 YTYGSLIDRLFKDKRLDLALKVISKMLED------S-YAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK-----GC-- 775 (997)
Q Consensus 710 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-- 775 (997)
.++..+...+...|++++|...++++.+. + .+....++..+...|...|++++|.+.+.++.+. +.
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34445555555555555555555555432 1 1123456667777777777777777777776653 11
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 001911 776 YPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK------GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTH 848 (997)
Q Consensus 776 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 848 (997)
+....++..+...|...|++++|++.+++..+. +-.| ...++..+..+|...|++++|..+++++....
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---- 199 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA---- 199 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----
Confidence 123556777888888888888888888887764 1133 35678889999999999999999999876521
Q ss_pred hhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCC------HHHHHHHHHHHhcCCCCCCcchhh
Q 001911 849 VAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGR------LEVALELHEEMTSFSSNSAASRNS 921 (997)
Q Consensus 849 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~ 921 (997)
.+.......+. ...+..+...+...+. +.++...++...... .....+
T Consensus 200 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 254 (283)
T 3edt_B 200 ----------------------HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS---PTVNTT 254 (283)
T ss_dssp ----------------------HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC---HHHHHH
T ss_pred ----------------------HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC---HHHHHH
Confidence 00000001122 2234444444443332 334444444333222 235677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 922 TLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 922 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+..++..|...|++++|...++++++
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999999999876
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=1.9e-09 Score=128.00 Aligned_cols=173 Identities=14% Similarity=0.058 Sum_probs=113.0
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 001911 720 FKDKRLDLALKVISKML--------EDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGK 791 (997)
Q Consensus 720 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 791 (997)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|.+.|+++.+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56777777777777776 322 334556666777777777777777777777765322 56667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHH
Q 001911 792 VGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLV 870 (997)
Q Consensus 792 ~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 870 (997)
.|++++|++.|++.++. .| +...|..+..++...|++++ ...+++..+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------------------------- 530 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------------------------- 530 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--------------------------
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--------------------------
Confidence 77777777777777764 34 45666777777777777777 77776665532
Q ss_pred HHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 871 NEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 871 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
+.+...|..++.+|.+.|++++|++.|+++.+..|. +..++..++.++...++
T Consensus 531 --------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 --------DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH---FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT---HHHHHHHHHHHTC----
T ss_pred --------CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc---cHHHHHHHHHHHHccCC
Confidence 123446667777777777777777777777766654 56666667766655554
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=8.3e-09 Score=102.55 Aligned_cols=138 Identities=16% Similarity=0.069 Sum_probs=105.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHh
Q 001911 784 AMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSRE 862 (997)
Q Consensus 784 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 862 (997)
.+...|.+.|++++|+..|++.++. .| +...+..+..++...|++++|...+++..+..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------ 118 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE------------------ 118 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------
Confidence 3788889999999999999999886 46 68889999999999999999999999987643
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGR--LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFE 940 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 940 (997)
+.+..++..++.+|...|+ .+.+...++++.... +....+..++.++...|++++|+.
T Consensus 119 ----------------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~g~~~~~~~~~~~A~~ 178 (208)
T 3urz_A 119 ----------------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT----KMQYARYRDGLSKLFTTRYEKARN 178 (208)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC----HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHccCHHHHHH
Confidence 2235578888888876654 455666666665422 344566677888888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH
Q 001911 941 LYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 941 ~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
.|+++++ +.|+..+...|.++
T Consensus 179 ~~~~al~--l~P~~~~~~~l~~i 199 (208)
T 3urz_A 179 SLQKVIL--RFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHHTT--TSCCHHHHHHHHHH
T ss_pred HHHHHHH--hCCCHHHHHHHHHH
Confidence 9999998 78987666555554
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.00 E-value=1e-08 Score=108.10 Aligned_cols=205 Identities=12% Similarity=-0.022 Sum_probs=132.8
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHH
Q 001911 719 LFKDKRLDLALKVISKMLED----SYAPN-VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY-PN----VVTYTAMIDG 788 (997)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~ 788 (997)
|...|++++|...|++..+. +.+++ ..+|+.+..+|.+.|++++|+..+++..+.... .+ ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666666555554432 21111 346667777777777777777777766542100 01 3467788888
Q ss_pred Hhcc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHh
Q 001911 789 FGKV-GKVDKCLELLRQMSSKGCA-PN----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSRE 862 (997)
Q Consensus 789 ~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 862 (997)
|... |++++|+..|++.++.... .+ ..++..+...+...|++++|+..+++..........
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------- 193 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL------------- 193 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT-------------
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc-------------
Confidence 8886 9999999999998763100 11 457888999999999999999999998764310000
Q ss_pred HHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcc--hhhHHHHHHHHH--hcCCHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAAS--RNSTLLLIESLS--LARKIDK 937 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~--~~g~~~~ 937 (997)
.... ...|..++.++...|++++|+..++++.+..|..... ...+..++..+. ..+++++
T Consensus 194 ---------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 258 (292)
T 1qqe_A 194 ---------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSE 258 (292)
T ss_dssp ---------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHH
T ss_pred ---------------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0000 1256778899999999999999999999887653221 123444555554 4578999
Q ss_pred HHHHHHHHHHcCCCCC
Q 001911 938 AFELYVDMIRKDGSPE 953 (997)
Q Consensus 938 A~~~~~~~~~~~~~p~ 953 (997)
|+..|+++.+ +.|+
T Consensus 259 A~~~~~~~~~--l~~~ 272 (292)
T 1qqe_A 259 HCKEFDNFMR--LDKW 272 (292)
T ss_dssp HHHHHTTSSC--CCHH
T ss_pred HHHHhccCCc--cHHH
Confidence 9999988776 5564
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=3.1e-08 Score=98.68 Aligned_cols=104 Identities=12% Similarity=0.018 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHH
Q 001911 728 ALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG----KVDKCLELLR 803 (997)
Q Consensus 728 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~l~~ 803 (997)
|++.|++..+.| ++..+..|...|...+++++|.+.|++..+.| ++..+..|...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555432 44445555555555555555555555555443 34444444444444 3 4555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 001911 804 QMSSKGCAPNFVTYRVLINHCCA----SGLLDEAHNLLEEMK 841 (997)
Q Consensus 804 ~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 841 (997)
+..+.| +...+..|...|.. .+++++|..++++..
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 116 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA 116 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 554432 33444444444444 445555555554443
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=6.2e-08 Score=100.90 Aligned_cols=218 Identities=10% Similarity=0.010 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcc---CC
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVG--KTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF----GKV---GK 794 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~---g~ 794 (997)
..++|+++++.++... +-+...|+.-...+...| ++++++++++.+.....+ +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3456777777776643 334556666666666667 788888888877776443 455555444444 334 67
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHH
Q 001911 795 VDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLD--EAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVN 871 (997)
Q Consensus 795 ~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 871 (997)
+++++++++++.+. .| |..+|..-..++.+.|.++ +++.+++++.+..
T Consensus 126 ~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--------------------------- 176 (306)
T 3dra_A 126 PYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--------------------------- 176 (306)
T ss_dssp THHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---------------------------
Confidence 88888888888875 34 7788888877788888877 8888888887654
Q ss_pred HhccCCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCH-HHHHHHHHH
Q 001911 872 EMGKTDSVPIVPAYRILIDHYIKAGR------LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKI-DKAFELYVD 944 (997)
Q Consensus 872 ~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 944 (997)
.-+..+|+....++...|+ ++++++.+++++...|. |..+|..+...+.+.|+. +++..+.++
T Consensus 177 -------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~---n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 177 -------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ---NPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp -------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred -------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC---CccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 2334456666666666665 88888888888887776 888888888888888773 445556666
Q ss_pred HHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 945 MIRKD-GSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 945 ~~~~~-~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
+++.+ ..| ++.++..|+++|.+.|+.++|++.++.+.+
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 65522 123 477888888888888888888888888765
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=1.7e-08 Score=91.85 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK 894 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 894 (997)
..|..++..+...|++++|..+++++.+.. +.+...+..++..+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~~ 47 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------------------PRSAEAWYNLGNAYYK 47 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC----------------------------------CcchhHHHHHHHHHHH
Confidence 356778889999999999999999887642 2345567889999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 001911 895 AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 895 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~~eA 973 (997)
.|++++|...++++....|. +...+..++..+...|++++|.+.++++.+ ..| +..++..++.+|...|++++|
T Consensus 48 ~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 48 QGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp HTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred hcCHHHHHHHHHHHHHHCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHH
Confidence 99999999999999987664 677888999999999999999999999998 456 478899999999999999999
Q ss_pred HHHHHHhhccC
Q 001911 974 LQLSYSICHTD 984 (997)
Q Consensus 974 ~~~~~~~~~~~ 984 (997)
...++++...+
T Consensus 123 ~~~~~~~~~~~ 133 (136)
T 2fo7_A 123 IEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHccC
Confidence 99999887643
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=2.8e-07 Score=95.95 Aligned_cols=232 Identities=11% Similarity=0.004 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CCHH
Q 001911 691 DEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK--RLDLALKVISKMLEDSYAPNVVIYTEMIDGL----IKV---GKTE 761 (997)
Q Consensus 691 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~ 761 (997)
++|+..+++++..++. +..+|+.--..+...+ ++++++++++.++... +.+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3444555554444322 3333444444444444 5555555555555432 22333444433333 333 5566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC------HHH
Q 001911 762 EAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVD--KCLELLRQMSSKGCAP-NFVTYRVLINHCCASGL------LDE 832 (997)
Q Consensus 762 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~------~~~ 832 (997)
+++++++++.+...+ |..+|+.-...+.+.|.++ ++++.++++++. .| |...|+.-..++...|. +++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 666667666665433 5666666555566666666 777777777765 33 56666666666655555 666
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHhcC
Q 001911 833 AHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEV-ALELHEEMTSF 911 (997)
Q Consensus 833 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 911 (997)
++++++++.... +.+..+|+.+..++.+.|+..+ +.++.+++.+.
T Consensus 205 El~~~~~aI~~~----------------------------------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 205 ELNYVKDKIVKC----------------------------------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHHHHHHHHHC----------------------------------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHHHHHHHHHhC----------------------------------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 666666655432 2344566666777766666333 44566655543
Q ss_pred CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 001911 912 SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIK 962 (997)
Q Consensus 912 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 962 (997)
......++.++..++.++.+.|+.++|+++++.+.+. +.| +...|...+.
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDYQIS 301 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHHHHh
Confidence 3111235667777777777777777777777777652 355 3555555443
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1.5e-07 Score=93.58 Aligned_cols=177 Identities=15% Similarity=0.045 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 001911 762 EAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASG----LLDEAHNLL 837 (997)
Q Consensus 762 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 837 (997)
+|.+.|++..+.| ++..+..|...|...+++++|+++|++..+.| +...+..|...|.. | ++++|..++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666653 56666667667777777777777777777654 45566666666666 5 677777777
Q ss_pred HHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCC
Q 001911 838 EEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIK----AGRLEVALELHEEMTSFSS 913 (997)
Q Consensus 838 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 913 (997)
++..+. .+..++..|+.+|.. .+++++|++.|+++.+..+
T Consensus 77 ~~A~~~------------------------------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 77 EKAVEA------------------------------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHT------------------------------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHC------------------------------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 776542 234455666666666 7777777777777776663
Q ss_pred CCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHhhcc
Q 001911 914 NSAASRNSTLLLIESLSL----ARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRV-N-----KWEEALQLSYSICHT 983 (997)
Q Consensus 914 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~-g-----~~~eA~~~~~~~~~~ 983 (997)
. ..+..++..|+..|.. .+++++|+..|+++.+. .++..++..|+.+|... | ++++|+.++++..+.
T Consensus 121 ~-~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 121 S-DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp S-HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred C-cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 1 0025666667777766 56677777777777763 23445666777776643 2 677777777766655
Q ss_pred C
Q 001911 984 D 984 (997)
Q Consensus 984 ~ 984 (997)
|
T Consensus 198 g 198 (212)
T 3rjv_A 198 G 198 (212)
T ss_dssp T
T ss_pred C
Confidence 4
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=4.5e-08 Score=98.62 Aligned_cols=208 Identities=10% Similarity=0.007 Sum_probs=118.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH-HHHHHH
Q 001911 710 YTYGSLIDRLFKDKRLDLALKVISKMLEDSYA-P-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCY-PNV-VTYTAM 785 (997)
Q Consensus 710 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~~~~~l 785 (997)
..+..+...+...|++++|+..|+++++.... + ....+..+..+|.+.|++++|...|+++.+.... +.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34444555566666666666666666653211 1 1234555566666666666666666666654222 111 122223
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHH
Q 001911 786 IDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIV 865 (997)
Q Consensus 786 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (997)
..++...|.. .+ ..|..+...+...|++++|...++++.+.+ |...........
T Consensus 85 g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~-------- 138 (225)
T 2yhc_A 85 GLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKR-------- 138 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHH--------
T ss_pred HHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHH--------
Confidence 3333222210 00 112223334445789999999999998765 333322221100
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 866 SLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 866 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
+..+.. ........++..|.+.|++++|+..|+++.+..|+......++..++.++.+.|++++|.+.++.+
T Consensus 139 ----l~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 139 ----LVFLKD----RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp ----HHHHHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----HHHHHH----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 000000 000123457889999999999999999999988764444578999999999999999999999999
Q ss_pred HHcCCCCC
Q 001911 946 IRKDGSPE 953 (997)
Q Consensus 946 ~~~~~~p~ 953 (997)
... .|+
T Consensus 211 ~~~--~~~ 216 (225)
T 2yhc_A 211 AAN--SSN 216 (225)
T ss_dssp HHC--CSC
T ss_pred Hhh--CCC
Confidence 884 454
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=1.5e-08 Score=106.48 Aligned_cols=164 Identities=10% Similarity=-0.038 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 001911 777 PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKV 855 (997)
Q Consensus 777 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 855 (997)
.+...+..+...+...|++++|+..|++.++. .| +...+..+..++...|++++|...++++...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~------------ 180 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ------------ 180 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG------------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh------------
Confidence 34556677778888899999999999998886 46 5778888899999999999999999876553
Q ss_pred HHhHhHhHHHHHHHHHHhccCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC
Q 001911 856 IEGFSREFIVSLGLVNEMGKTDSVPIVPAY-RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 856 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
.|+.... ......+...++.++|++.++++....|+ +...+..++..+...|+
T Consensus 181 -----------------------~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~---~~~~~~~la~~l~~~g~ 234 (287)
T 3qou_A 181 -----------------------DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE---DAALATQLALQLHQVGR 234 (287)
T ss_dssp -----------------------GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTC
T ss_pred -----------------------hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc---cHHHHHHHHHHHHHccc
Confidence 2443322 23334467778888899999999888775 88889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 935 IDKAFELYVDMIRKDGSPE---LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 935 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
+++|+..|+++++ ..|+ ..++..|+.+|...|+.++|...+++.+.
T Consensus 235 ~~~A~~~l~~~l~--~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 235 NEEALELLFGHLR--XDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHH--HCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999998 4564 56888999999999999999988887643
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=5.8e-09 Score=100.54 Aligned_cols=159 Identities=9% Similarity=0.019 Sum_probs=117.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHh
Q 001911 782 YTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFS 860 (997)
Q Consensus 782 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 860 (997)
+..+...+...|++++|+..|++.++. .| +...+..+..++...|++++|...+++.....
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---------------- 70 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---------------- 70 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----------------
Confidence 445566777888888888888887764 45 57788888888888888888888887765432
Q ss_pred HhHHHHHHHHHHhccCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHH
Q 001911 861 REFIVSLGLVNEMGKTDSVPIVPAYRILIDH-YIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAF 939 (997)
Q Consensus 861 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 939 (997)
|+...+..++.. +...+...+|++.++++.+..|+ +...+..++.++...|++++|+
T Consensus 71 -------------------p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~---~~~~~~~la~~~~~~g~~~~A~ 128 (176)
T 2r5s_A 71 -------------------QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPD---NFELACELAVQYNQVGRDEEAL 128 (176)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcccHHHHH
Confidence 322222222212 12223334578888888888775 7888889999999999999999
Q ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 940 ELYVDMIRKDGSPE---LSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 940 ~~~~~~~~~~~~p~---~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
..|+++++ ..|+ ..++..++.+|...|+.++|...+++.+.
T Consensus 129 ~~~~~~l~--~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 129 ELLWNILK--VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHT--TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHH--hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999988 4564 45888999999999999999999887654
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=4.3e-08 Score=89.17 Aligned_cols=129 Identities=18% Similarity=0.190 Sum_probs=80.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHh
Q 001911 781 TYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFS 860 (997)
Q Consensus 781 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 860 (997)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++....
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence 34555566666666666666666666542 2245566666666666677777777666655432
Q ss_pred HhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 001911 861 REFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFE 940 (997)
Q Consensus 861 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 940 (997)
+.+...+..++..+...|++++|++.++++....|. +...+..++.++...|++++|..
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHccHHHHHH
Confidence 122335556666777777777777777776665543 45566667777777777777777
Q ss_pred HHHHHHH
Q 001911 941 LYVDMIR 947 (997)
Q Consensus 941 ~~~~~~~ 947 (997)
.++++++
T Consensus 125 ~~~~~~~ 131 (136)
T 2fo7_A 125 YYQKALE 131 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7777666
No 106
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=1.6e-07 Score=96.59 Aligned_cols=243 Identities=10% Similarity=0.003 Sum_probs=168.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 001911 683 GFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEE 762 (997)
Q Consensus 683 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 762 (997)
-..-.|++..++.-. .+...........-+.++|...|+++.. ..-.|....+..+...+ . ++
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~-~~--- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-D-TK--- 84 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-T-TT---
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-c-cc---
Confidence 344568888888733 3322232333444556778878876632 11234443444444433 3 22
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 763 AYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMK 841 (997)
Q Consensus 763 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 841 (997)
|...|++..+.+ .++..++..+..++...|++++|++++.+.+..|-.+ +...+..++.++.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 788888887664 4567777788889999999999999999998765323 57788899999999999999999999997
Q ss_pred hcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHhcCC
Q 001911 842 QTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-----IVPAYRILIDH--YIKAG--RLEVALELHEEMTSFS 912 (997)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~ 912 (997)
+.. | +..+...|+.+ ....| ++++|..+|+++.+..
T Consensus 164 ~~~-----------------------------------~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 164 NAI-----------------------------------EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHS-----------------------------------CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred hcC-----------------------------------ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 642 4 23344445433 44444 9999999999998876
Q ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 913 SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK-----DG---SPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 913 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
| +......+..++.+.|++++|.+.++.+.+. .. .|+ +.++..++.++...|+ +|.++++++.+.
T Consensus 209 p----~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 209 P----TWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp C----SHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred C----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 4 2122222333788999999999999977662 11 365 7778788888888897 899999988765
Q ss_pred C
Q 001911 984 D 984 (997)
Q Consensus 984 ~ 984 (997)
.
T Consensus 283 ~ 283 (310)
T 3mv2_B 283 D 283 (310)
T ss_dssp T
T ss_pred C
Confidence 4
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.88 E-value=2.2e-08 Score=118.92 Aligned_cols=186 Identities=11% Similarity=-0.047 Sum_probs=143.0
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 001911 685 CKVGKLDEAQMVFSKML--------EHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK 756 (997)
Q Consensus 685 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 756 (997)
...|++++|++.++++. +..+ .+...+..+...+...|++++|+..|+++++.. +.+...|..+...|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67889999999999988 4433 356678888888999999999999999988754 4467788888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 001911 757 VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHN 835 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 835 (997)
.|++++|.+.|+++.+.... +...|..+..++.+.|++++ ++.|++.++. .| +...|..+..++.+.|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998886433 66788888889999999999 9999998885 45 57888899999999999999999
Q ss_pred HHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCH-----HHHHHHHHHHh
Q 001911 836 LLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRL-----EVALELHEEMT 909 (997)
Q Consensus 836 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~ 909 (997)
.+++..+. .|+ ..++..++.++...++. ++..+..+...
T Consensus 556 ~~~~al~l-----------------------------------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 556 TLDEVPPT-----------------------------------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp HHHTSCTT-----------------------------------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred HHHhhccc-----------------------------------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence 99887653 355 34677788888776663 44444444444
Q ss_pred cC
Q 001911 910 SF 911 (997)
Q Consensus 910 ~~ 911 (997)
..
T Consensus 601 ~~ 602 (681)
T 2pzi_A 601 AL 602 (681)
T ss_dssp TS
T ss_pred hC
Confidence 44
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=2.6e-09 Score=99.69 Aligned_cols=127 Identities=10% Similarity=0.006 Sum_probs=103.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCH
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRL 898 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 898 (997)
|...+...|++++|+..+++.... .|+ ...+..++.+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~-----------------------------------~p~~~~~~~~la~~y~~~~~~ 47 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS-----------------------------------PRQKSIKGFYFAKLYYEAKEY 47 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS-----------------------------------HHHHHTTHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc-----------------------------------CcccHHHHHHHHHHHHHcCCH
Confidence 344555667778887777765432 233 23567799999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH-
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQL- 976 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~- 976 (997)
++|++.|+++++..|+ +..+|..++.++...|++++|+..|+++++ +.|+ +.++..++.+|.+.|++++|.+.
T Consensus 48 ~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~ 122 (150)
T 4ga2_A 48 DLAKKYICTYINVQER---DPKAHRFLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYW 122 (150)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9999999999999876 899999999999999999999999999999 7796 88999999999999999887765
Q ss_pred HHHhhccCCc
Q 001911 977 SYSICHTDIN 986 (997)
Q Consensus 977 ~~~~~~~~~~ 986 (997)
+++.......
T Consensus 123 ~~~al~l~P~ 132 (150)
T 4ga2_A 123 VERAAKLFPG 132 (150)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHhCcC
Confidence 5877765443
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=2.4e-08 Score=116.62 Aligned_cols=163 Identities=12% Similarity=-0.005 Sum_probs=118.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 001911 757 VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHN 835 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 835 (997)
.|++++|.+.++++.+... -+...+..+...+...|++++|++.+++..+. .| +...+..+..+|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4788899999998887532 26788888888999999999999999999886 45 57888899999999999999999
Q ss_pred HHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 001911 836 LLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNS 915 (997)
Q Consensus 836 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 915 (997)
.+++..+.. +.+...+..++.+|...|++++|++.++++.+..|.
T Consensus 79 ~~~~al~~~----------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 123 (568)
T 2vsy_A 79 LLQQASDAA----------------------------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE- 123 (568)
T ss_dssp HHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHhcC----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 998877642 223557888999999999999999999999888765
Q ss_pred CcchhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 916 AASRNSTLLLIESLSLA---RKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 916 ~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
+...+..++.++... |++++|.+.++++++ ..|+ ...+..++
T Consensus 124 --~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 124 --EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA--QGVGAVEPFAFLS 169 (568)
T ss_dssp --CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH--HTCCCSCHHHHTT
T ss_pred --CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh--cCCcccChHHHhC
Confidence 778888899999888 999999999999988 4464 44555555
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.87 E-value=1.4e-08 Score=91.23 Aligned_cols=105 Identities=13% Similarity=0.126 Sum_probs=94.7
Q ss_pred CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 001911 879 VPIV-PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LST 956 (997)
Q Consensus 879 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 956 (997)
.|+. ..+..++..|.+.|++++|++.|+++++..|. +..+|..++.++...|++++|+..++++++ +.|+ ..+
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a 83 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE---NAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKG 83 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHH
Confidence 4553 37888999999999999999999999998876 889999999999999999999999999999 6786 889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCccc
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICHTDINWL 988 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~ 988 (997)
|..++.+|...|++++|++.+++.++...+..
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999999988765543
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.87 E-value=1e-08 Score=95.08 Aligned_cols=102 Identities=11% Similarity=0.055 Sum_probs=93.4
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 001911 879 VPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LST 956 (997)
Q Consensus 879 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 956 (997)
.|+ ...+..++..+.+.|++++|++.|+++...+|. +...|..++.+|...|++++|+..|+++++ +.|+ +.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~ 106 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTP 106 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHH
Confidence 454 347888999999999999999999999999886 899999999999999999999999999999 7786 889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
|..++.+|...|++++|+..+++.+....
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999887654
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=3.9e-08 Score=88.31 Aligned_cols=115 Identities=15% Similarity=0.029 Sum_probs=95.7
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHH
Q 001911 810 CAPN-FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRIL 888 (997)
Q Consensus 810 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 888 (997)
+.|+ ...+......|.+.|++++|+..|++..+.. +.+...|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~~ 53 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----------------------------------PENAILYSNR 53 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHH
Confidence 4564 5677888889999999999999998877643 2345678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
+.+|.+.|++++|++.++++++.+|. +..+|..++.++...|++++|++.|+++++ +.|+ ..++..|+.+
T Consensus 54 ~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 54 AACLTKLMEFQRALDDCDTCIRLDSK---FIKGYIRKAACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hhHHHhhccHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHHh
Confidence 99999999999999999999988775 788899999999999999999999999999 6785 7777777765
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=7.8e-08 Score=100.90 Aligned_cols=169 Identities=12% Similarity=-0.002 Sum_probs=133.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 001911 741 APNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYR-V 819 (997)
Q Consensus 741 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-~ 819 (997)
+.+...+..+...+.+.|++++|...|+++.+.... +...+..+...+...|++++|+..++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 345566777888888999999999999998886433 6778888999999999999999999988775 46544333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 899 (997)
....+...++.++|...+++..... +.+...+..++..|...|+++
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~----------------------------------P~~~~~~~~la~~l~~~g~~~ 236 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN----------------------------------PEDAALATQLALQLHQVGRNE 236 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC----------------------------------CccHHHHHHHHHHHHHcccHH
Confidence 3334667788888888888876643 234567888999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+|++.++++....|+ ..+...+..++..+...|+.++|...|++.+.
T Consensus 237 ~A~~~l~~~l~~~p~-~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 237 EALELLFGHLRXDLT-AADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTT-GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc-cccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999988765 12377888999999999999999999988765
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.77 E-value=3.9e-07 Score=96.01 Aligned_cols=173 Identities=8% Similarity=-0.039 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN-----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRK 854 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 854 (997)
..+...+..+...|++++|++.+++..+...... ...+..+...+...|++++|...+++........
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------- 148 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG------- 148 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-------
Confidence 3455567778899999999999998887532211 1234456677788899999999999887532110
Q ss_pred HHHhHhHhHHHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhc---CCCCCC-cchhhHHHHHHH
Q 001911 855 VIEGFSREFIVSLGLVNEMGKTDSVPI--VPAYRILIDHYIKAGRLEVALELHEEMTS---FSSNSA-ASRNSTLLLIES 928 (997)
Q Consensus 855 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~-~~~~~~~~l~~~ 928 (997)
..+. ..+++.++..|...|++++|++.++++.+ ..+... ....++..++.+
T Consensus 149 -----------------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 149 -----------------------IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp -----------------------SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -----------------------CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 0111 33788999999999999999999999883 332211 122688899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHhhc
Q 001911 929 LSLARKIDKAFELYVDMIRKD----GSPE-LSTFVHLIKGLIRVNKWEEA-LQLSYSICH 982 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~y~~~g~~~eA-~~~~~~~~~ 982 (997)
|...|++++|+..++++++.. .... ..++..++.+|.+.|++++| ...+++...
T Consensus 206 y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 206 LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 999999999999999998632 1111 57899999999999999999 777777654
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=1.2e-07 Score=100.83 Aligned_cols=189 Identities=9% Similarity=0.057 Sum_probs=119.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHH
Q 001911 752 DGLIKVGKTEEAYKVMLMMEEK----GCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAPN--FVTYRVL 820 (997)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~~~~~l 820 (997)
..|...|++++|...|.+..+. +-.+ -..+|+.+...|...|++++|+..|++.++. | .|. ..++..+
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~l 122 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRA 122 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 3455566666666666665542 1000 1335666777777778888888887776542 1 121 4567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHHHHHHhcCCHH
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 899 (997)
..+|.. |++++|+..+++..+.. .. .+..+ ...++..++.+|...|+++
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~--------------------------~~---~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVF--------------------------EN---EERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHH--------------------------HH---TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHH--------------------------Hh---CCChhHHHHHHHHHHHHHHHcCCHH
Confidence 888878 99999998888875421 00 00000 1235778889999999999
Q ss_pred HHHHHHHHHhcCCCCCCc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCH
Q 001911 900 VALELHEEMTSFSSNSAA---SRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE------LSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~y~~~g~~ 970 (997)
+|++.|+++....+.... ....+..++.++...|++++|...|++++ . .|+ ......++.+| ..|+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~ 248 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDE 248 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCH
Confidence 999999998875432111 12356667777777899999999999987 3 343 22455666655 56776
Q ss_pred HHHHH
Q 001911 971 EEALQ 975 (997)
Q Consensus 971 ~eA~~ 975 (997)
+.+.+
T Consensus 249 ~~~~~ 253 (307)
T 2ifu_A 249 EQLLR 253 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=5.5e-08 Score=103.33 Aligned_cols=212 Identities=11% Similarity=0.001 Sum_probs=155.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 001911 721 KDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIK-VGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCL 799 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 799 (997)
..|++++|.+++++..+.. +.. +.+ .+++++|...|.++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567888888888776531 111 112 47888888887765 44677899999999
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhc
Q 001911 800 ELLRQMSSK----GCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMG 874 (997)
Q Consensus 800 ~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 874 (997)
+.|.+..+. |-.+ -..+|..+..+|...|++++|...+++..+.. .+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------------------------~~-- 108 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY--------------------------VE-- 108 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------------------------HT--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH--------------------------HH--
Confidence 999987763 2111 14578889999999999999999999876421 00
Q ss_pred cCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 875 KTDSVPI--VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA---ASRNSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 875 ~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
.+ .+. ..++..++.+|.. |++++|++.|+++....+... ....++..++.++...|++++|+..|+++++..
T Consensus 109 -~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 109 -NG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp -TT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -cC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 01 111 2467789999988 999999999999987543211 124678889999999999999999999998721
Q ss_pred ----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccchh
Q 001911 950 ----GSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQE 990 (997)
Q Consensus 950 ----~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~ 990 (997)
..+. ..++..++.+|...|++++|+..+++.+ ....+...
T Consensus 186 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 1111 2377888999999999999999999998 76666543
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=8e-08 Score=112.16 Aligned_cols=163 Identities=12% Similarity=-0.021 Sum_probs=117.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 001911 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLEL 801 (997)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 801 (997)
.|++++|.+.+++..+.. +.+...+..+...|.+.|++++|.+.+++..+... .+...+..+...|...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999888753 34577888899999999999999999999988643 3678888899999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC
Q 001911 802 LRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP 880 (997)
Q Consensus 802 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 880 (997)
+++..+. .| +...+..+..+|...|++++|...+++..+.. +.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~ 123 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----------------------------------PE 123 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TT
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CC
Confidence 9998886 45 57888899999999999999999998877643 22
Q ss_pred ChhhHHHHHHHHHhc---CCHHHHHHHHHHHhcCCCCCCcchhhHHHH
Q 001911 881 IVPAYRILIDHYIKA---GRLEVALELHEEMTSFSSNSAASRNSTLLL 925 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 925 (997)
+...+..++.++... |++++|.+.++++.+..|. +...+..+
T Consensus 124 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 168 (568)
T 2vsy_A 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG---AVEPFAFL 168 (568)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC---CSCHHHHT
T ss_pred CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc---ccChHHHh
Confidence 355788899999999 9999999999999888765 33444444
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=1.3e-07 Score=87.48 Aligned_cols=107 Identities=13% Similarity=-0.016 Sum_probs=93.6
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHH
Q 001911 810 CAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRIL 888 (997)
Q Consensus 810 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 888 (997)
+.| +...+..+...+...|++++|...|++..... +.+...|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----------------------------------P~~~~~~~~l 76 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----------------------------------FYNVDYIMGL 76 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHH
Confidence 456 46788889999999999999999999987653 2345688899
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELS 955 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 955 (997)
+.+|...|++++|++.|+++.+..|+ +...|..++.+|...|++++|+..|+++++ ..||..
T Consensus 77 g~~~~~~g~~~~Ai~~~~~al~l~P~---~~~~~~~lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 77 AAIYQIKEQFQQAADLYAVAFALGKN---DYTPVFHTGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSS---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHHccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 99999999999999999999999876 888999999999999999999999999999 568754
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.74 E-value=8.4e-08 Score=92.32 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=106.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINH-CC 825 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~-~~ 825 (997)
+..+...+.+.|++++|...|+++.+... .+...+..+...+...|++++|+..+++.... .|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 44555667777777888777777665422 25666777777777778888888877777664 3343333222211 11
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
..+...+|...+++..+. .|+ ...+..++.++...|++++|++.
T Consensus 86 ~~~~~~~a~~~~~~al~~-----------------------------------~P~~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA-----------------------------------NPDNFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH-----------------------------------STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccchHHHHHHHHHHh-----------------------------------CCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 222233455666555443 243 55777888888888888888888
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++++.+..|. ..+...+..++.++...|+.++|...|++.+.
T Consensus 131 ~~~~l~~~p~-~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 131 LWNILKVNLG-AQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHTTCTT-TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCcc-cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 8888887654 12355777888888888888888888888765
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=1e-06 Score=92.52 Aligned_cols=219 Identities=11% Similarity=0.041 Sum_probs=157.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-C-CHHHHH
Q 001911 723 KRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVG-KTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKV-G-KVDKCL 799 (997)
Q Consensus 723 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~ 799 (997)
+..++|++++++++... +-+..+|+.-...+...| .+++++++++.+.....+ +..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 44456777777777653 345566777777777777 488888888888876544 777777766666665 6 788999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHH
Q 001911 800 ELLRQMSSKGCAP-NFVTYRVLINHCCASGLLD--------EAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLV 870 (997)
Q Consensus 800 ~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 870 (997)
++++++++. .| |..+|+.-..++.+.|.++ +++++++++.+..
T Consensus 146 ~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------------------------- 197 (349)
T 3q7a_A 146 EYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------------------------- 197 (349)
T ss_dssp HHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--------------------------
Confidence 999998876 45 7778877777766666666 7888888777653
Q ss_pred HHhccCCCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCH--------
Q 001911 871 NEMGKTDSVPIVPAYRILIDHYIKAGR-------LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKI-------- 935 (997)
Q Consensus 871 ~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------- 935 (997)
.-+..+|+....++.+.++ ++++++.+++++...|+ |..+|..+.+.+.+.|+.
T Consensus 198 --------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~---n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 198 --------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH---NVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp --------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred --------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCCcccccccc
Confidence 2345578877777777776 79999999999998886 999999988888877653
Q ss_pred ------------HHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 936 ------------DKAFELYVDMIRKD----G-SPELSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 936 ------------~~A~~~~~~~~~~~----~-~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.+......++...+ . .+.+.++..|+++|.+.|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 33333333333221 1 23577899999999999999999999998754
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=2e-07 Score=92.85 Aligned_cols=129 Identities=7% Similarity=-0.088 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
.+..+...+...|++++|...+++.. .|+...+..++.+|...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-------------------------------------~~~~~~~~~lg~~~~~~ 50 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-------------------------------------DPHSRICFNIGCMYTIL 50 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-------------------------------------SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-------------------------------------CCChHHHHHHHHHHHHc
Confidence 35556677778888888888886642 24556777888888888
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------------HHHHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-----------------LSTFV 958 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----------------~~~~~ 958 (997)
|++++|++.++++....|. +..++..++.++...|++++|++.++++++ ..|+ ..++.
T Consensus 51 g~~~~A~~~~~~al~~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (213)
T 1hh8_A 51 KNMTEAEKAFTRSINRDKH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALI--QLRGNQLIDYKILGLQFKLFACEVLY 125 (213)
T ss_dssp TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCSEEECGGGTBCCEEEHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCccHHHHHHhccccCccchHHHH
Confidence 8888888888888877665 677888888888888888888888888888 3342 26788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 959 HLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 959 ~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
.++.+|...|++++|...+++.......
T Consensus 126 ~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 126 NIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 8888888888888888888888776553
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=3.8e-07 Score=90.88 Aligned_cols=132 Identities=10% Similarity=-0.082 Sum_probs=85.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhH
Q 001911 782 YTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSR 861 (997)
Q Consensus 782 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 861 (997)
+..+...+...|++++|++.|++.. .|+...+..+..++...|++++|...+++.....
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD----------------- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Confidence 3445556666777777777766553 4566667777777777777777777776665432
Q ss_pred hHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-------------cchhhHHHHHHH
Q 001911 862 EFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSA-------------ASRNSTLLLIES 928 (997)
Q Consensus 862 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~ 928 (997)
+.+...+..++.+|...|++++|++.++++.+..|... ....++..++.+
T Consensus 68 -----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 68 -----------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence 12334566677777777777777777777766544311 123667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 929 LSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
+...|++++|...++++++ ..|+
T Consensus 131 ~~~~g~~~~A~~~~~~al~--~~p~ 153 (213)
T 1hh8_A 131 YAKKEEWKKAEEQLALATS--MKSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHT--TCCS
T ss_pred HHHccCHHHHHHHHHHHHH--cCcc
Confidence 7777777777777777777 4564
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.70 E-value=2.7e-05 Score=87.87 Aligned_cols=124 Identities=10% Similarity=0.103 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001911 711 TYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV-GKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGF 789 (997)
Q Consensus 711 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 789 (997)
.|...+....+.+..+.|..+|++. +.. ..+...|......-... ++.+.|.++|+...+.. +-++..+...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 4444555555556666666666666 211 12222332222211122 24667777777666542 21344455555555
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
.+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++..
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677777777777652 1355566666655666777777776666653
No 124
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.69 E-value=4.1e-06 Score=87.59 Aligned_cols=182 Identities=12% Similarity=0.012 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC-HHHHHH
Q 001911 760 TEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG--KVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGL-LDEAHN 835 (997)
Q Consensus 760 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~-~~~A~~ 835 (997)
+++++.+++.+.....+ +..+|+.-...+.+.| .++++++++.++.+. .| |...|+.-..++...|. +++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 56777777777775444 6677776666666666 377888888888875 34 67777777777777777 578888
Q ss_pred HHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc--------------CCHHHH
Q 001911 836 LLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA--------------GRLEVA 901 (997)
Q Consensus 836 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A 901 (997)
+++++.+.. +-+..+|+....++... +.++++
T Consensus 167 ~~~~~I~~~----------------------------------p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eE 212 (331)
T 3dss_A 167 FTDSLITRN----------------------------------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 212 (331)
T ss_dssp HHHHHHHHC----------------------------------SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHH
T ss_pred HHHHHHHHC----------------------------------CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHH
Confidence 887777654 12233444444443333 457889
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HH
Q 001911 902 LELHEEMTSFSSNSAASRNSTLLLIESLSLA-----------RKIDKAFELYVDMIRKDGSPELSTFVHLIKG-----LI 965 (997)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-----y~ 965 (997)
++.++++....|+ |..+|+.+.+.+... +.++++++.++++++ ..||. .|..+..+ .-
T Consensus 213 le~~~~ai~~~P~---d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~ 286 (331)
T 3dss_A 213 LELVQNAFFTDPN---DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALD 286 (331)
T ss_dssp HHHHHHHHHHSTT---CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCC---CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhc
Confidence 9999998888876 888888777777665 458899999999998 67874 23332222 22
Q ss_pred hcCCHHHHHHHHHHhhccC
Q 001911 966 RVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 966 ~~g~~~eA~~~~~~~~~~~ 984 (997)
..|..+++...++++...+
T Consensus 287 ~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 287 PLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp TTTTHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHhC
Confidence 4677888888888877654
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=1.2e-06 Score=92.39 Aligned_cols=171 Identities=10% Similarity=0.008 Sum_probs=124.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHh
Q 001911 784 AMIDGFGKVGKVDKCLELLRQMSSKG-CAPNF----VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEG 858 (997)
Q Consensus 784 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 858 (997)
..+..+...|++++|.+++++..+.. ..|+. ..+..+...+...|++++|...+++.........
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~---------- 149 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI---------- 149 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS----------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc----------
Confidence 34667788999999999999988742 12221 1333467777788899999999999876321110
Q ss_pred HhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCCCcchhhHHHHHHHHHhcCC
Q 001911 859 FSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSF----SSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 859 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
...-...+++.++..|...|++++|++.++++.+. +........++..++.+|...|+
T Consensus 150 ------------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 150 ------------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH
Confidence 00000225888999999999999999999998842 11112234578899999999999
Q ss_pred HHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHhhc
Q 001911 935 IDKAFELYVDMIRK----DGSPE-LSTFVHLIKGLIRVNK-WEEALQLSYSICH 982 (997)
Q Consensus 935 ~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~y~~~g~-~~eA~~~~~~~~~ 982 (997)
+++|+..++++++. +..+. ..++..++.+|.+.|+ +++|++.+++...
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999998862 12222 5789999999999995 6999999988764
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=3.4e-05 Score=87.08 Aligned_cols=124 Identities=10% Similarity=-0.030 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchhhHHHHHHh
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASG-LLDEAHNLLEEMKQTYWPTHVAGYRKVIEG 858 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 858 (997)
..|...+..+.+.+..+.|..+|++. ... ..+...|...+..-...| +.+.|..+|+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-------------- 350 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-------------- 350 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--------------
Confidence 34555566666667777788888777 321 123444443332222223 5777777777766542
Q ss_pred HhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHH
Q 001911 859 FSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDK 937 (997)
Q Consensus 859 ~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 937 (997)
|+ ...+...++.....|+.+.|..+|+++.+ ....|...+.--...|+.+.
T Consensus 351 ---------------------~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~~ 402 (493)
T 2uy1_A 351 ---------------------PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSMEL 402 (493)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHH
Confidence 22 22344455666677888888888888732 45566666655566688888
Q ss_pred HHHHHHHHHH
Q 001911 938 AFELYVDMIR 947 (997)
Q Consensus 938 A~~~~~~~~~ 947 (997)
+.++++++.+
T Consensus 403 ~r~v~~~~~~ 412 (493)
T 2uy1_A 403 FRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777777764
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=6.8e-07 Score=90.61 Aligned_cols=101 Identities=8% Similarity=-0.101 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE--LSTFVHLI 961 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~ 961 (997)
..+.++..+.+.|+|++|+..++.....+.+ .....++..++.++...|++++|+..|+++......|. ..+++.++
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~-~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~g 215 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK-FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLA 215 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc-ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 3444555555555555555555544332100 00123455555555555555555555555554222142 33555555
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCC
Q 001911 962 KGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
.++.+.|+.++|...++++.....
T Consensus 216 laL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 216 MARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 555555555555555555554433
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=4.4e-07 Score=86.05 Aligned_cols=130 Identities=10% Similarity=0.022 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|...+++..... +.+...+..++.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~~a~~~~ 58 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN----------------------------------PSNAIYYGNRSLAYL 58 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------------------CCChHHHHHHHHHHH
Confidence 4567788888999999999999999887642 234567888999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH--HHHHHHHhcCCH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV--HLIKGLIRVNKW 970 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~--~l~~~y~~~g~~ 970 (997)
..|++++|++.++++.+..|. +...+..++.++...|++++|...++++++ ..|+ ..++. .++..+...|++
T Consensus 59 ~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~ 133 (166)
T 1a17_A 59 RTECYGYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAF 133 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988765 788999999999999999999999999999 5574 55664 455558899999
Q ss_pred HHHHHHHHHhhc
Q 001911 971 EEALQLSYSICH 982 (997)
Q Consensus 971 ~eA~~~~~~~~~ 982 (997)
++|+..+++...
T Consensus 134 ~~A~~~~~~~~~ 145 (166)
T 1a17_A 134 ERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHcccchHH
Confidence 999999987644
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.65 E-value=6.1e-08 Score=89.95 Aligned_cols=98 Identities=13% Similarity=-0.014 Sum_probs=89.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+..++..+...|++++|+..|+++....|. +...|..++.++...|++++|+..|+++++ +.|+ +.++..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~l 95 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHH
Confidence 446788999999999999999999999998876 889999999999999999999999999999 6685 7899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccC
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
+.+|...|++++|+..+++.+...
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999987654
No 130
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=1.6e-07 Score=83.57 Aligned_cols=99 Identities=11% Similarity=-0.085 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
.+..++..+.+.|++++|+..++++.+..|. +...|..++.++...|++++|+..++++++ +.|+ ..++..|+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4677889999999999999999999998876 889999999999999999999999999999 6785 889999999
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCcc
Q 001911 963 GLIRVNKWEEALQLSYSICHTDINW 987 (997)
Q Consensus 963 ~y~~~g~~~eA~~~~~~~~~~~~~~ 987 (997)
+|...|++++|+..+++++.....+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 9999999999999999988765443
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=3.6e-07 Score=98.14 Aligned_cols=164 Identities=10% Similarity=-0.030 Sum_probs=123.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHH
Q 001911 792 VGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLV 870 (997)
Q Consensus 792 ~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 870 (997)
.+++++|++.++...+. .| +...+..+...|.+.|++++|...|++............. ..+..
T Consensus 126 L~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-----------~~~~~-- 190 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-----------EEAQK-- 190 (336)
T ss_dssp EEEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-----------HHHHH--
T ss_pred EeecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-----------HHHHH--
Confidence 34455565555544432 34 4667888889999999999999999988764311100000 00000
Q ss_pred HHhccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 871 NEMGKTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD 949 (997)
Q Consensus 871 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 949 (997)
. .| ....|..++.+|.+.|++++|++.++++++..|. +..++..++.+|...|++++|+..|+++++
T Consensus 191 --~-----~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-- 258 (336)
T 1p5q_A 191 --A-----QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQ-- 258 (336)
T ss_dssp --H-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred --H-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 0 01 1357888999999999999999999999998876 889999999999999999999999999999
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHhhc
Q 001911 950 GSPE-LSTFVHLIKGLIRVNKWEEA-LQLSYSICH 982 (997)
Q Consensus 950 ~~p~-~~~~~~l~~~y~~~g~~~eA-~~~~~~~~~ 982 (997)
+.|+ ..++..++.+|...|++++| ...+++|..
T Consensus 259 l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 259 LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6785 88999999999999999999 556666654
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.59 E-value=6.9e-07 Score=80.46 Aligned_cols=119 Identities=12% Similarity=0.002 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...+..+...+...|++++|...+++..... +.+...+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~ 56 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN----------------------------------PANAVYFCNRAAAY 56 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----------------------------------CCCHHHHHHHHHHH
Confidence 45678888889999999999999998876542 22455778899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~y~~~g~~ 970 (997)
...|++++|++.++++....|. +...+..++.++...|++++|...++++++ ..| +..++..++.++.+.|++
T Consensus 57 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 57 SKLGNYAGAVQDCERAICIDPA---YSKAYGRMGLALSSLNKHVEAVAYYKKALE--LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhhchHHHHHHHHHHHhcCcc---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999987765 678899999999999999999999999998 557 478899999999988875
No 133
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.59 E-value=1.6e-05 Score=83.49 Aligned_cols=233 Identities=9% Similarity=-0.004 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHH
Q 001911 690 LDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK-RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKV-G-KTEEAYKV 766 (997)
Q Consensus 690 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~ 766 (997)
.++|++++++++..++. +..+|+.--..+...| .+++++++++.++... +.+..+|+.-...+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34556666666655433 4444554444444555 3666666666666543 34555566555555554 5 56666777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC-------H
Q 001911 767 MLMMEEKGCYPNVVTYTAMIDGFGKVGKVD--------KCLELLRQMSSKGCAP-NFVTYRVLINHCCASGL-------L 830 (997)
Q Consensus 767 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~-------~ 830 (997)
++++.+...+ |...|+.-...+.+.|.++ ++++.++++.+. .| |...|+....++.+.++ +
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHH
Confidence 7666665333 5555555444444444444 888888888876 34 67788887777777765 6
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH------------
Q 001911 831 DEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL------------ 898 (997)
Q Consensus 831 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~------------ 898 (997)
++++++++++.... +.+..+|+.+...+.+.|+.
T Consensus 225 ~eELe~~~~aI~~~----------------------------------P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~ 270 (349)
T 3q7a_A 225 QDELIYILKSIHLI----------------------------------PHNVSAWNYLRGFLKHFSLPLVPILPAILPYT 270 (349)
T ss_dssp HHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGT
T ss_pred HHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 77777777776543 22334555555555554442
Q ss_pred --------HHHHHHHHHHhcCC---CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 001911 899 --------EVALELHEEMTSFS---SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-ELSTFVHLIK 962 (997)
Q Consensus 899 --------~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 962 (997)
.+..++...+.... ......+.++..|+.+|...|+.++|.++++.+.+. ..| ....|...+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 271 ASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFRRR 345 (349)
T ss_dssp C--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHHHH
Confidence 22333333332221 011357788888888888888888999998888653 455 3555555544
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.3e-07 Score=82.38 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
..+..++..+...|++++|++.|+++.+..|. +...|..++.++...|++++|+..++++++ ..|+ ..++..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 45778999999999999999999999998876 889999999999999999999999999999 6785 88999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhccC
Q 001911 962 KGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
.+|...|++++|+..+++.....
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999988765
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=5.8e-07 Score=81.37 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...+..+...+...|++++|...+++..... +.+...+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~la~~~ 60 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----------------------------------PKDAKLYSNRAACY 60 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----------------------------------TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------------CCcHHHHHHHHHHH
Confidence 45667777777777777777777777765532 12344666777777
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~ 969 (997)
...|++++|++.++++.+..|. +...+..++.++...|++++|...++++++ ..|+ ..++..++.+|...|+
T Consensus 61 ~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 61 TKLLEFQLALKDCEECIQLEPT---FIKGYTRKAAALEAMKDYTKAMDVYQKALD--LDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhcC
Confidence 7777777777777777776554 666777777777777788888887777777 4564 5667777777776653
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.58 E-value=1.9e-07 Score=83.95 Aligned_cols=97 Identities=10% Similarity=-0.053 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------H
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE--------L 954 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~ 954 (997)
.++..|+..+.+.|++++|++.|+++++..|. +..+|..++.+|...|++++|++.++++++ +.|+ .
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHH
Confidence 36778999999999999999999999998876 889999999999999999999999999998 3342 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
.++..++.+|...|++++|++.+++.+...
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 478899999999999999999999887643
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=1.3e-06 Score=77.94 Aligned_cols=116 Identities=18% Similarity=0.143 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|..+++++.... +.+...+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~la~~~~ 54 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------------------PNNAEAWYNLGNAYY 54 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------------------cCcHHHHHHHHHHHH
Confidence 5677788888888899999998888876532 223456778888889
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVN 968 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g 968 (997)
..|++++|+..++++....|. +...+..++.++...|++++|...++++.+ ..|+ ..++..++.++...|
T Consensus 55 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 55 KQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhcc
Confidence 999999999999998877654 677888888889999999999999999888 4574 777888888877654
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=1.5e-06 Score=88.09 Aligned_cols=204 Identities=10% Similarity=-0.009 Sum_probs=139.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHH------------CCCC-----
Q 001911 721 KDKRLDLALKVISKMLEDSYAPNVVIYTEM-------IDGLIKVGKTEEAYKVMLMMEE------------KGCY----- 776 (997)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~g~~----- 776 (997)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+....+ .|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677778888888777653 3345666666 4555555555555555555443 1110
Q ss_pred ---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 001911 777 ---PNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYR 853 (997)
Q Consensus 777 ---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 853 (997)
--...+..+...+...|++++|.++|..+... .|+......+...+.+.|++++|+..|+..... +
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~------- 165 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P------- 165 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-------
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-------
Confidence 00223445667788899999999999888875 475446777777888999999999999754321 0
Q ss_pred HHHHhHhHhHHHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh
Q 001911 854 KVIEGFSREFIVSLGLVNEMGKTDSVPI--VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL 931 (997)
Q Consensus 854 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 931 (997)
.|. ...+..++.++...|++++|++.|+++...+.+.......+..++.++.+
T Consensus 166 -------------------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 166 -------------------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred -------------------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 111 23577799999999999999999999875321011145677888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 932 ARKIDKAFELYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 932 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
.|+.++|...|+++.+ ..|+..++..|.+-
T Consensus 221 lGr~deA~~~l~~a~a--~~P~~~~~~aL~~~ 250 (282)
T 4f3v_A 221 QGNESAAVALLEWLQT--THPEPKVAAALKDP 250 (282)
T ss_dssp HTCHHHHHHHHHHHHH--HSCCHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHh--cCCcHHHHHHHhCC
Confidence 9999999999999999 56875555555443
No 139
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.57 E-value=3.2e-07 Score=84.50 Aligned_cols=98 Identities=12% Similarity=-0.003 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+..++..+...|++++|++.|+++....|. +...|..++.++...|++++|+..|+++++ ..|+ +.++..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 346778899999999999999999999998876 889999999999999999999999999999 6685 7899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccC
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
+.+|...|++++|+..+++.+...
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987654
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.55 E-value=6.7e-06 Score=86.45 Aligned_cols=171 Identities=14% Similarity=0.061 Sum_probs=126.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 001911 749 EMIDGLIKVGKTEEAYKVMLMMEEKGC-YPNV----VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCA-PN----FVTYR 818 (997)
Q Consensus 749 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~ 818 (997)
..+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|+..+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999999887422 2221 13345666777888999999999999884222 22 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCC
Q 001911 819 VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGR 897 (997)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 897 (997)
.+..+|...|++++|..+++++.+.. .... +..+. ..++..++..|.+.|+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~--------------------------~~~~--~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQL--------------------------EALH--DNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------HHSS--CCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------Hhcc--cchhHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999886421 1100 01122 2368889999999999
Q ss_pred HHHHHHHHHHHhcCCCC---CCcchhhHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 001911 898 LEVALELHEEMTSFSSN---SAASRNSTLLLIESLSLARK-IDKAFELYVDMIR 947 (997)
Q Consensus 898 ~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 947 (997)
+++|++.++++.+..+. ...-..++..++.++...|+ +++|.+.++++++
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999998864321 11236788999999999994 7999999999876
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=2.9e-07 Score=88.55 Aligned_cols=101 Identities=8% Similarity=0.071 Sum_probs=90.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH-HHhcCCH--HHHHHHHHHHHHcCCCCC-HHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIES-LSLARKI--DKAFELYVDMIRKDGSPE-LST 956 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~~~~p~-~~~ 956 (997)
+...|..++.+|...|++++|++.++++.+..|. +...+..++.+ +...|++ ++|+..++++++ ..|+ ..+
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 117 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATVLYYQASQHMTAQTRAMIDKALA--LDSNEITA 117 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH--HCTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH--hCCCcHHH
Confidence 4567889999999999999999999999988775 78889999999 7789998 999999999999 5675 889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+..++.+|...|++++|...++++......
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999998876554
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=4.7e-07 Score=83.90 Aligned_cols=112 Identities=10% Similarity=-0.020 Sum_probs=87.8
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCC
Q 001911 801 LLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSV 879 (997)
Q Consensus 801 l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 879 (997)
.|+++... .| +...+..+...+...|++++|...|++..... +
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------------p 52 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----------------------------------H 52 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------T
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----------------------------------c
Confidence 44555543 45 46677778888889999999999998876543 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.+...|..++.+|...|++++|++.|+++....|. +...+..++.++...|++++|+..|+++++ ..|+
T Consensus 53 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 121 (148)
T 2vgx_A 53 YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---EPRFPFHAAECLLQXGELAEAESGLFLAQE--LIAN 121 (148)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTT
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 34557788888999999999999999999888775 778888889999999999999999999888 4454
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.53 E-value=4.7e-06 Score=87.68 Aligned_cols=172 Identities=13% Similarity=0.051 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCC--H
Q 001911 746 IYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNV------VTYTAMIDGFGKVGKVDKCLELLRQMSSKG---CAPN--F 814 (997)
Q Consensus 746 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~ 814 (997)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++..+.. ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445666778888898988888887765322 22 223445566778899999999999988632 1222 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC--ChhhHHHHHHHH
Q 001911 815 VTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP--IVPAYRILIDHY 892 (997)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~ 892 (997)
.+++.+...|...|++++|..++++..+.. ... ...+ ...+++.++..|
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~--------------------------~~~---~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQL--------------------------EAL---HDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------HHS---CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------Hhc---CccccchHHHHHhHHHHH
Confidence 588999999999999999999999876320 000 0011 124788899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCC---CCcchhhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSN---SAASRNSTLLLIESLSLARKIDKA-FELYVDMIR 947 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 947 (997)
...|++++|++.++++.+..+. ...-..++..++.+|...|++++| ...+++++.
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 9999999999999998764311 111267888999999999999999 777888775
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=1.4e-06 Score=85.92 Aligned_cols=98 Identities=13% Similarity=-0.036 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----H
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSF---SSNSA-ASRNSTLLLIESLSLARKIDKAFELYVDMIRKDG-SPE----L 954 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~ 954 (997)
.+..++..|...|++++|++.++++... .+... ....++..++.++...|++++|...++++++... .++ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444555555555555555555555433 11000 1223344555555555555555555555543110 011 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
.++..++.+|...|++++|...+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 234555555555555555555555443
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=1e-06 Score=91.90 Aligned_cols=97 Identities=16% Similarity=-0.027 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 001911 743 NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLI 821 (997)
Q Consensus 743 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~ 821 (997)
+...+..+...+.+.|++++|...|+++.+.... +...|..+...|.+.|++++|+..+++.++. .| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4566777788888888999999888888876322 7778888888888899999999999888875 45 577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 001911 822 NHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~m~~ 842 (997)
.+|...|++++|...+++..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999998888765
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=4.6e-07 Score=85.88 Aligned_cols=101 Identities=11% Similarity=-0.045 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+..++..|...|++++|++.|+++.+..|. +...|..++.+|...|++++|+..++++++ +.|+ ..+|..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 85 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 457888999999999999999999999998876 889999999999999999999999999999 6685 8899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCcc
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTDINW 987 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~~~~ 987 (997)
+.+|...|++++|+..+++.+......
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999988765544
No 147
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=2.8e-06 Score=80.32 Aligned_cols=130 Identities=9% Similarity=0.057 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhH
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGF 859 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 859 (997)
..+..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+++.....
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------------- 77 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--------------- 77 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 456666777778888888888888877752 2257778888888888888888888888776532
Q ss_pred hHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHH--HHHhcCCHHH
Q 001911 860 SREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIE--SLSLARKIDK 937 (997)
Q Consensus 860 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~ 937 (997)
+.+...+..++.+|...|++++|++.++++.+..|. +...+..+.. .+...|++++
T Consensus 78 -------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~~~~~~~~~~~~~~~ 135 (166)
T 1a17_A 78 -------------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DKDAKMKYQECNKIVKQKAFER 135 (166)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 223456777888888888888888888888877664 4555543333 3667788888
Q ss_pred HHHHHHHHHH
Q 001911 938 AFELYVDMIR 947 (997)
Q Consensus 938 A~~~~~~~~~ 947 (997)
|++.+++...
T Consensus 136 A~~~~~~~~~ 145 (166)
T 1a17_A 136 AIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHcccchHH
Confidence 8888877654
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=2.4e-06 Score=76.54 Aligned_cols=113 Identities=10% Similarity=-0.091 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|...+++..... +.+...|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~~a~~~~ 49 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----------------------------------PEDARGYSNRAAALA 49 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------------------CCChHHHHHHHHHHH
Confidence 4567888899999999999999999987643 234568889999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CC-HHHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS------PE-LSTFVHLIKGLI 965 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------p~-~~~~~~l~~~y~ 965 (997)
+.|++++|++.++++.+..|. +...+..++.++...|++++|+..++++++ +. |+ ..++..+..+..
T Consensus 50 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 50 KLMSFPEAIADCNKAIEKDPN---FVRAYIRKATAQIAVKEYASALETLDAART--KDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhCHHHHHHHHHHHHH--hCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999998876 788999999999999999999999999998 56 65 556666666543
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.48 E-value=5.2e-05 Score=79.24 Aligned_cols=228 Identities=10% Similarity=-0.012 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--C
Q 001911 692 EAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDK----------RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVG--K 759 (997)
Q Consensus 692 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~ 759 (997)
+|+..++.++..++. +..+|+.--..+...+ .+++++.+++.++... +.+..+|+.-...+.+.| .
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 566666666655433 3333333222222222 2577888888887654 457778887777777777 4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc----------
Q 001911 760 TEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK-VDKCLELLRQMSSKGCAP-NFVTYRVLINHCCAS---------- 827 (997)
Q Consensus 760 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~---------- 827 (997)
+++++.+++++.+...+ |...|+.-...+...|. ++++++.+.++++. .| |...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 78888999888887554 77777777777777787 58899999998886 45 677787777766655
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc--------
Q 001911 828 ----GLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA-------- 895 (997)
Q Consensus 828 ----g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 895 (997)
+.++++++++++..... +.+..+|+-+-..+.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~----------------------------------P~d~SaW~Y~r~ll~~~~~~~~~~~ 248 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTD----------------------------------PNDQSAWFYHRWLLGAGSGRCELSV 248 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHHSSSCGGGCCH
T ss_pred ccchHHHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHhccCccccch
Confidence 45677777777766543 22334555444444443
Q ss_pred ---CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 001911 896 ---GRLEVALELHEEMTSFSSNSAASRNSTLLLIES---LSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG 963 (997)
Q Consensus 896 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 963 (997)
+.++++++.++++.+..|+ +.-.+..++.. ....|..+++...+.++++ +.|. ..-|..+...
T Consensus 249 ~~~~~l~~el~~~~elle~~pd---~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 249 EKSTVLQSELESCKELQELEPE---NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCcc---cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHHHH
Confidence 5689999999999998875 43333332221 1235788999999999999 7785 4555555544
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=1.4e-06 Score=85.51 Aligned_cols=179 Identities=8% Similarity=-0.059 Sum_probs=111.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhH
Q 001911 785 MIDGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREF 863 (997)
Q Consensus 785 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 863 (997)
.+......|++++|.+.+..-... .+ ....+..+...+...|++++|...+++...... .........+....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~--- 83 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKK--- 83 (198)
T ss_dssp ------------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHH---
T ss_pred hhhhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHH---
Confidence 334445566666666665533321 12 355677888889999999999999998876421 00000000000000
Q ss_pred HHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 864 IVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYV 943 (997)
Q Consensus 864 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 943 (997)
.. -....+..++.+|...|++++|+..++++.+..|. +..++..++.++...|++++|+..|+
T Consensus 84 -------~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 84 -------KN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN---NVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp -------HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------HH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 00 01256788999999999999999999999998775 78899999999999999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH-HHHHHhhccCCccc
Q 001911 944 DMIRKDGSPE-LSTFVHLIKGLIRVNKWEEAL-QLSYSICHTDINWL 988 (997)
Q Consensus 944 ~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~-~~~~~~~~~~~~~~ 988 (997)
++++ +.|+ ..++..++.++...|+.+++. ..+.++...+.-+.
T Consensus 147 ~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 191 (198)
T 2fbn_A 147 KAAS--LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYE 191 (198)
T ss_dssp HHHH--HSTTCHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHH--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 9999 6685 789999999999999999988 67777777666553
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.47 E-value=1.8e-06 Score=77.47 Aligned_cols=112 Identities=8% Similarity=0.070 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+.+.|++++|+..|++..+.. +.+...|..++.+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~----------------------------------p~~~~~~~nlg~~~~ 53 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD----------------------------------PSNITFYNNKAAVYF 53 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHhHHHHHH
Confidence 4567788999999999999999999987643 223557889999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAAS----RNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLI 961 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 961 (997)
..|++++|++.++++++..|..... ..++..++.++...|++++|++.|++.++ ..||+.....|.
T Consensus 54 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l~ 123 (127)
T 4gcn_A 54 EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKVK 123 (127)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHHH
Confidence 9999999999999998875532222 24677889999999999999999999998 568876554443
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.47 E-value=1.2e-06 Score=79.85 Aligned_cols=102 Identities=13% Similarity=-0.011 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc----c-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAA----S-----RNSTLLLIESLSLARKIDKAFELYVDMIRKDG--- 950 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 950 (997)
..+...+..+.+.|++++|++.|+++++..|..+. + ...|..++.++...|++++|+..++++++ +
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhc
Confidence 34667889999999999999999999998765211 2 33899999999999999999999999999 6
Q ss_pred ----CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 951 ----SPE-LSTF----VHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 951 ----~p~-~~~~----~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
.|+ ..+| +.++.+|...|++++|+..|++.++...+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 897 7788 99999999999999999999998775433
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=1.5e-06 Score=79.29 Aligned_cols=101 Identities=6% Similarity=-0.060 Sum_probs=91.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 001911 880 PIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV 958 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 958 (997)
.+...+..++..+...|++++|+..|+++....|. +...+..++.++...|++++|+..++++++ ..|+ ..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHH
Confidence 34567889999999999999999999999988775 788999999999999999999999999999 5675 88999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 959 HLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 959 ~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
.++.+|...|++++|+..++++.....
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 999999999999999999998876543
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=1.2e-06 Score=76.33 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE---LSTFV 958 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~ 958 (997)
...+..++..+...|++++|+..++++.+..|. +..++..++.++...|++++|+..++++++ ..|+ ..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~ 80 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWA 80 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHH
Confidence 346778999999999999999999999988765 778899999999999999999999999999 4564 78999
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhhccCC
Q 001911 959 HLIKGLIRV-NKWEEALQLSYSICHTDI 985 (997)
Q Consensus 959 ~l~~~y~~~-g~~~eA~~~~~~~~~~~~ 985 (997)
.++.+|... |++++|++.++++.....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999999 999999999999887554
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=1.6e-06 Score=78.41 Aligned_cols=99 Identities=9% Similarity=0.051 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+..++..+...|++++|++.++++.+..|. +..++..++.++...|++++|+..++++++ ..|+ ..++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l 90 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHHHH
Confidence 457889999999999999999999999988765 788999999999999999999999999999 5675 8899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
+.+|...|++++|++.+++......
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999877544
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=1.3e-06 Score=80.33 Aligned_cols=104 Identities=13% Similarity=-0.034 Sum_probs=82.4
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHH
Q 001911 811 AP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILI 889 (997)
Q Consensus 811 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 889 (997)
.| +...+..+...+...|++++|...|++..... +.+...|..++
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~lg 59 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD----------------------------------HYDARYFLGLG 59 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC----------------------------------CccHHHHHHHH
Confidence 44 35566777788888899999998888876643 22455777888
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 890 DHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 890 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.+|...|++++|+..|+++....|. +...+..++.++...|++++|+..|+++++ ..|+
T Consensus 60 ~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 118 (142)
T 2xcb_A 60 ACRQSLGLYEQALQSYSYGALMDIN---EPRFPFHAAECHLQLGDLDGAESGFYSARA--LAAA 118 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 8889999999999999998888775 777888888888999999999999998888 4453
No 157
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.43 E-value=8e-07 Score=85.43 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=86.6
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHH
Q 001911 790 GKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGL 869 (997)
Q Consensus 790 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 869 (997)
...|++++|+..+++..+.. +.+...|..+..+|...|++++|...+++.....
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------------- 74 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR------------------------- 74 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------------
Confidence 45677777888887777652 2256777788888888888888888887765532
Q ss_pred HHHhccCCCCCChhhHHHHHHH-HHhcCCH--HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001911 870 VNEMGKTDSVPIVPAYRILIDH-YIKAGRL--EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMI 946 (997)
Q Consensus 870 ~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 946 (997)
+.+...+..++.+ |...|++ ++|++.++++.+..|. +...+..++.++...|++++|...+++++
T Consensus 75 ---------p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 75 ---------GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN---EITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp ---------CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1234466677777 6677887 8888888888777664 66777788888888888888888888888
Q ss_pred HcCCCCC
Q 001911 947 RKDGSPE 953 (997)
Q Consensus 947 ~~~~~p~ 953 (997)
+ ..|+
T Consensus 143 ~--~~p~ 147 (177)
T 2e2e_A 143 D--LNSP 147 (177)
T ss_dssp H--TCCT
T ss_pred h--hCCC
Confidence 7 4564
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=2.2e-06 Score=75.41 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+..++..+...|++++|++.++++....|. +...+..++.++...|++++|...++++++ ..|+ ..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 346778999999999999999999999988765 788899999999999999999999999999 5675 8899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+.+|...|++++|...+++....+..
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999998876544
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=5.7e-06 Score=72.67 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|...+++..... +.+...+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~ 49 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----------------------------------PHNHVLYSNRSAAYA 49 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----------------------------------CCcHHHHHHHHHHHH
Confidence 4567777888888888888888888876532 224556778888888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGL 964 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y 964 (997)
..|++++|++.++++.+..|. +...+..++.++...|++++|...++++++ ..|+ ..++..++.+.
T Consensus 50 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 50 KKGDYQKAYEDGCKTVDLKPD---WGKGYSRKAAALEFLNRFEEAKRTYEEGLK--HEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--cCCCCHHHHHHHHHhh
Confidence 899999999999998887664 677888888888899999999999999888 5674 66666666553
No 160
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=2.6e-06 Score=91.36 Aligned_cols=129 Identities=12% Similarity=0.009 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPN----------------FVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
..+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|.+.|++++|+..+++..+.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555555566666666666665553 232 478899999999999999999999998764
Q ss_pred CCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHH
Q 001911 844 YWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTL 923 (997)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 923 (997)
. +.+..+|..++.+|...|++++|++.|+++.+..|. +..++.
T Consensus 226 ~----------------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~a~~ 268 (336)
T 1p5q_A 226 D----------------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN---NKAAKT 268 (336)
T ss_dssp C----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHH
T ss_pred C----------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 3 234568889999999999999999999999998876 788999
Q ss_pred HHHHHHHhcCCHHHH-HHHHHHHHH
Q 001911 924 LLIESLSLARKIDKA-FELYVDMIR 947 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A-~~~~~~~~~ 947 (997)
.++.++...|++++| ...|++|..
T Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 269 QLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 557777765
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=8.6e-06 Score=72.33 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHh
Q 001911 779 VVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEG 858 (997)
Q Consensus 779 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 858 (997)
...+..+...+...|++++|+++++++.... +.+..++..+..++...|++++|..+++++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------------- 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------------
Confidence 4456666666667777777777777766642 2246666677777777777777777777665432
Q ss_pred HhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh
Q 001911 859 FSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL 931 (997)
Q Consensus 859 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 931 (997)
+.+...+..++..|...|++++|.+.++++....|. +...+..++.++..
T Consensus 74 --------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 74 --------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAKQNLGNAKQK 123 (125)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred --------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHh
Confidence 123345666777777777777777777777766553 55555555555543
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=2.9e-06 Score=76.32 Aligned_cols=98 Identities=18% Similarity=0.116 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE----LSTFVHL 960 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l 960 (997)
+..++..+...|++++|++.++++.+..|+.......+..++.++...|++++|+..++++++ ..|+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS--RYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HCCCCcccHHHHHHH
Confidence 556888999999999999999999987776333347888999999999999999999999998 4564 6789999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccC
Q 001911 961 IKGLIRVNKWEEALQLSYSICHTD 984 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~~~~~~~~~ 984 (997)
+.+|...|++++|+..++++....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999987754
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.37 E-value=2.3e-06 Score=89.20 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=69.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001911 708 NVYTYGSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMID 787 (997)
Q Consensus 708 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 787 (997)
+...+..+...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|...++++.+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34456666667777777777777777776643 33566777777777777777777777777776532 25667777777
Q ss_pred HHhccCCHHHHHHHHHHHHhC
Q 001911 788 GFGKVGKVDKCLELLRQMSSK 808 (997)
Q Consensus 788 ~~~~~g~~~~A~~l~~~m~~~ 808 (997)
+|...|++++|+..|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777888888888887777653
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.35 E-value=3.3e-06 Score=75.95 Aligned_cols=118 Identities=12% Similarity=0.051 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|...+++..... +.+...+..++.+|.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~la~~~~ 49 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD----------------------------------PTNMTYITNQAAVYF 49 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----------------------------------CccHHHHHHHHHHHH
Confidence 4567778888888899999988888876542 223456778888888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAAS----RNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRV 967 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~ 967 (997)
..|++++|+..++++....|...++ ..++..++.++...|++++|...++++++ ..|+......+..++...
T Consensus 50 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 50 EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHH
Confidence 9999999999999888765432112 67788888888889999999999999888 457777677776665543
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=3.6e-06 Score=79.58 Aligned_cols=102 Identities=16% Similarity=-0.054 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...+..+...+...|++++|+..|++..+.. +.+...|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~l~~~~ 55 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----------------------------------PANPIYLSNRAAAY 55 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CcCHHHHHHHHHHH
Confidence 46778889999999999999999999987643 22456788999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
...|++++|++.++++.+..|. +...|..++.++...|++++|+..|+++++ +.|+
T Consensus 56 ~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 111 (164)
T 3sz7_A 56 SASGQHEKAAEDAELATVVDPK---YSKAWSRLGLARFDMADYKGAKEAYEKGIE--AEGN 111 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHSS
T ss_pred HHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence 9999999999999999998876 789999999999999999999999999999 5675
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.34 E-value=6.3e-06 Score=73.99 Aligned_cols=120 Identities=10% Similarity=-0.052 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 001911 778 NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIE 857 (997)
Q Consensus 778 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 857 (997)
+...+..+...+...|++++|+..+++..... +.+...+..+..++...|++++|...+++.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------- 76 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID------------- 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-------------
Confidence 34556666777777788888888887777652 2256777777788888888888888887766532
Q ss_pred hHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCH
Q 001911 858 GFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKI 935 (997)
Q Consensus 858 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 935 (997)
+.+...+..++.+|...|++++|.+.++++.+..|. +...+..++.++...|++
T Consensus 77 ---------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 ---------------------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD---NETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTTC
T ss_pred ---------------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHhcC
Confidence 123446677788888888888888888888777654 666777777777666653
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.33 E-value=2.3e-06 Score=80.77 Aligned_cols=103 Identities=10% Similarity=-0.018 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcC--------CCC-------CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSF--------SSN-------SAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..+...+..+.+.|++++|++.|++++.. .|. .+.+..+|..++.++...|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 46778999999999999999999999876 111 012567899999999999999999999999999
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCcc
Q 001911 948 KDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINW 987 (997)
Q Consensus 948 ~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 987 (997)
+.|+ ..+|..++.+|...|++++|+..+++.+....+.
T Consensus 92 --~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 92 --REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred --cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 6785 8899999999999999999999999988776543
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=4.6e-06 Score=75.93 Aligned_cols=98 Identities=13% Similarity=0.004 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...+..+...+...|++++|...+++..... +.+...+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~l~~~~ 53 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN----------------------------------PLVAVYYTNRALCY 53 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC----------------------------------cCcHHHHHHHHHHH
Confidence 56777788888888888888888888776532 22345677788888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
...|++++|+..++++....|. +...+..++.++...|++++|+..++++++
T Consensus 54 ~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 54 LKMQQPEQALADCRRALELDGQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888877665 677888888888888888888888888877
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=9.3e-06 Score=79.78 Aligned_cols=163 Identities=9% Similarity=-0.013 Sum_probs=113.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSK----GCAP-NFVTYRVLINHCCASGL 829 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~ 829 (997)
...|++++|.+.++.+... .......+..+...+...|++++|+..+++..+. |..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3467888888855544432 2235667777888888888888888888887651 2222 35678888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 830 LDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP--IVPAYRILIDHYIKAGRLEVALELHEE 907 (997)
Q Consensus 830 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 907 (997)
+++|...+++..+.. .+ .+..| ....+..++..+...|++++|.+.+++
T Consensus 82 ~~~A~~~~~~al~~~--------------------------~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 82 WDAARRCFLEERELL--------------------------AS---LPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHH--------------------------HH---SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------------------------HH---cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999998876521 00 01011 123577899999999999999999999
Q ss_pred HhcCCC---CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 908 MTSFSS---NSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 908 ~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+....+ .......++..++.++...|++++|...++++++
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 875321 1111234567889999999999999999999887
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=6.7e-06 Score=75.87 Aligned_cols=104 Identities=12% Similarity=0.007 Sum_probs=90.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVH 959 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 959 (997)
+...+..++..+...|++++|++.|+++.+..|........+..++.++...|++++|+..++++++ ..|+ ..++..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE--KDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCccCHHHHHH
Confidence 3557888999999999999999999999988764111178899999999999999999999999999 5674 889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 960 LIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 960 l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
++.+|...|++++|...+++.......
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999998876544
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.2e-05 Score=74.09 Aligned_cols=112 Identities=11% Similarity=-0.079 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC----hhhHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI----VPAYRIL 888 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l 888 (997)
+...+..+...+...|++++|...+++..+.. |+ ...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~~~~~~~~~~~ 71 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----------------------------------ATPQDQAVLHRNR 71 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----------------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----------------------------------ccchHHHHHHHHH
Confidence 56677777888888888888888888776532 33 3467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001911 889 IDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGL 964 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y 964 (997)
+.+|...|++++|++.++++.+..|. +...+..++.++...|++++|...++++++ ..|+ ..++..+..+.
T Consensus 72 a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 72 AACHLKLEDYDKAETEASKAIEKDGG---DVKALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHhhCcc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHH
Confidence 88888888899998888888877654 677888888888888999999999988888 5575 56666666554
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=4e-06 Score=74.37 Aligned_cols=99 Identities=13% Similarity=-0.037 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001911 816 TYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKA 895 (997)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 895 (997)
.+..+...+.+.|++++|...+++..+.. +.+...|..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------------P~~~~a~~~lg~~~~~~ 64 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE----------------------------------PEREEAWRSLGLTQAEN 64 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------------------CCCHHHHHHHHHHHHHc
Confidence 45667788899999999999999987753 23456888999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
|++++|+..++++.+..|. +...+..++.++...|++++|+..++++++ ..|+
T Consensus 65 g~~~~A~~~~~~al~l~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~ 117 (121)
T 1hxi_A 65 EKDGLAIIALNHARMLDPK---DIAVHAALAVSHTNEHNANAALASLRAWLL--SQPQ 117 (121)
T ss_dssp TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcC
Confidence 9999999999999999876 788999999999999999999999999998 5675
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.28 E-value=4.8e-06 Score=93.53 Aligned_cols=164 Identities=10% Similarity=0.004 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHH
Q 001911 793 GKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVN 871 (997)
Q Consensus 793 g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 871 (997)
+++++|++.|+...+. .| ....|..+...|.+.|++++|...|++..+......... .....
T Consensus 248 ~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---------~~~~~------ 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS---------EKESK------ 310 (457)
T ss_dssp EEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC---------HHHHH------
T ss_pred hhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC---------hHHHH------
Confidence 3445555555443332 23 355677888888999999999999988765321000000 00000
Q ss_pred HhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001911 872 EMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGS 951 (997)
Q Consensus 872 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 951 (997)
+.. .-....|..++.+|.+.|++++|+..++++++..|. +..+|..++.+|...|++++|+..|+++++ +.
T Consensus 311 ~~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~ 381 (457)
T 1kt0_A 311 ASE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VN 381 (457)
T ss_dssp HHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC
T ss_pred HHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hC
Confidence 000 001357888999999999999999999999998876 889999999999999999999999999999 77
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHH-HHHHhhc
Q 001911 952 PE-LSTFVHLIKGLIRVNKWEEALQ-LSYSICH 982 (997)
Q Consensus 952 p~-~~~~~~l~~~y~~~g~~~eA~~-~~~~~~~ 982 (997)
|+ ..++..++.++.+.|++++|.+ .+.+|.+
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 86 7789999999999999998875 4455543
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.28 E-value=1.2e-06 Score=86.05 Aligned_cols=156 Identities=12% Similarity=-0.042 Sum_probs=101.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC--------------HHHHHH
Q 001911 755 IKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGC-APN--------------FVTYRV 819 (997)
Q Consensus 755 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--------------~~~~~~ 819 (997)
...|++++|.+.+..-.+.. ......+..+...+...|++++|+..|++.++... .|+ ...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp -------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 33455555555554322110 01234556666677777778888777777776411 110 278888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 001911 820 LINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLE 899 (997)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 899 (997)
+..+|...|++++|+..+++..+.. +.+...+..++.+|...|+++
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~lg~~~~~~~~~~ 139 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKID----------------------------------KNNVKALYKLGVANMYFGFLE 139 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC----------------------------------cccHHHHHHHHHHHHHcccHH
Confidence 9999999999999999999887642 234567888999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAF-ELYVDMIRK 948 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 948 (997)
+|++.|+++.+..|. +..++..++.++...++.+++. ..+..+...
T Consensus 140 ~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 140 EAKENLYKAASLNPN---NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999998775 7888888988888888877776 556666553
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.25 E-value=1.8e-05 Score=70.99 Aligned_cols=109 Identities=17% Similarity=0.079 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh----hhHHHHHHHH
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV----PAYRILIDHY 892 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~ 892 (997)
+..+...+...|++++|...++++.... |+. ..+..++.+|
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------p~~~~~~~~~~~lg~~~ 49 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-----------------------------------PNGVYTPNALYWLGESY 49 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------SSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-----------------------------------CCCcccHHHHHHHHHHH
Confidence 3456778889999999999999887643 322 3677899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
...|++++|+..++++....|.......++..++.++...|++++|...++++++ ..|+ ..+......
T Consensus 50 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 50 YATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT--QYPGSDAARVAQER 118 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTSHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCChHHHHHHHH
Confidence 9999999999999999988776332377889999999999999999999999999 4576 444443333
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=2e-06 Score=97.01 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 001911 819 VLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRL 898 (997)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 898 (997)
.+...+.+.|++++|...+++..+.. +.+...|..++.+|.+.|++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~----------------------------------p~~~~~~~~lg~~~~~~g~~ 56 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN----------------------------------PSNAIYYGNRSLAYLRTECY 56 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC----------------------------------CccHHHHHHHHHHHHHhcCH
Confidence 34455678899999999999887642 22356888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH--HHhcCCHHHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKG--LIRVNKWEEALQ 975 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--y~~~g~~~eA~~ 975 (997)
++|++.++++.+..|. +..++..++.+|...|++++|++.|+++++ ..|+ ..++..++.+ +.+.|++++|++
T Consensus 57 ~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 57 GYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp HHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998875 788999999999999999999999999999 5675 5677777777 999999999999
Q ss_pred HHH
Q 001911 976 LSY 978 (997)
Q Consensus 976 ~~~ 978 (997)
.++
T Consensus 132 ~~~ 134 (477)
T 1wao_1 132 GDE 134 (477)
T ss_dssp ---
T ss_pred ccc
Confidence 998
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=5.5e-06 Score=74.41 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C-------H
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP-E-------L 954 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-------~ 954 (997)
..+..++..+...|++++|+..++++.+..|. +...+..++.++...|++++|...++++++. .| + .
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 79 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--ccccchhHHHHH
Confidence 45778999999999999999999999988765 7888999999999999999999999999984 34 2 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSICHTDI 985 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~ 985 (997)
.++..++.+|...|++++|.+.++++.....
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 7899999999999999999999999887543
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=2.8e-05 Score=89.20 Aligned_cols=172 Identities=10% Similarity=-0.024 Sum_probs=139.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 001911 759 KTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGK----------VDKCLELLRQMSSKGCAP-NFVTYRVLINHCCAS 827 (997)
Q Consensus 759 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~ 827 (997)
..++|++.++++.+.... +...|+.--..+...|+ ++++++.++++.+. .| +..+|..-..++.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 346778888888876433 56667666666666666 89999999999986 45 788899888888898
Q ss_pred C--CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHH
Q 001911 828 G--LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAG-RLEVALEL 904 (997)
Q Consensus 828 g--~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~ 904 (997)
| ++++++.+++++.+.. +-+..+|+.....+.+.| .++++++.
T Consensus 121 ~~~~~~~el~~~~k~l~~d----------------------------------~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD----------------------------------ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhc----------------------------------cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 9 7799999999988754 234557888888888888 89999999
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLA--------------RKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~ 969 (997)
++++++..|. |..+|...+.++... +++++|++.++++++ ..|+ ..+|..+..++.+.|+
T Consensus 167 ~~~~I~~~p~---n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 167 TDSLITRNFS---NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHTTTTTTCC---CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCC---CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCC
Confidence 9999998876 889999988887763 568999999999999 6785 8899999999999998
Q ss_pred HHH
Q 001911 970 WEE 972 (997)
Q Consensus 970 ~~e 972 (997)
+++
T Consensus 242 ~~~ 244 (567)
T 1dce_A 242 HDV 244 (567)
T ss_dssp CSC
T ss_pred ccc
Confidence 665
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.20 E-value=8.9e-06 Score=88.20 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...|..++.+|.+.|++++|++.++++++..|. +..++..++.+|...|++++|+..|+++++ +.|+ ..++..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l 347 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAEL 347 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 347888999999999999999999999998875 889999999999999999999999999999 6785 7889999
Q ss_pred HHHHHhcCCHHHHHHH
Q 001911 961 IKGLIRVNKWEEALQL 976 (997)
Q Consensus 961 ~~~y~~~g~~~eA~~~ 976 (997)
+.++...++.+++.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887653
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=4.8e-06 Score=75.93 Aligned_cols=111 Identities=9% Similarity=-0.065 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILIDHY 892 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~ 892 (997)
...+......+.+.|++++|+..|++..+.... .... ......| +...|..++.++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~-~~~~----------------------~a~~~~~~~a~a~~n~g~al 67 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT-MPPE----------------------EAFDHAGFDAFCHAGLAEAL 67 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-SCTT----------------------SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-Ccch----------------------hhhhhccchHHHHHHHHHHH
Confidence 344666777888899999999999887653210 0000 0000001 122789999999
Q ss_pred HhcCCHHHHHHHHHHHhcC-------CCCCCcchhhH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 893 IKAGRLEVALELHEEMTSF-------SSNSAASRNST----LLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
.+.|++++|+..++++++. .|. +...| ...+.++...|++++|+..|+++++ +.|
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle--l~p 133 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE--MIE 133 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHH
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh--cCC
Confidence 9999999999999999998 875 88899 9999999999999999999999998 556
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.17 E-value=9e-06 Score=76.59 Aligned_cols=126 Identities=17% Similarity=0.102 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTY-------WPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAY 885 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~ 885 (997)
...+......+.+.|++++|...|++..... .|.+... ..+ .|. ...|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-------------------~~~-----~~~~~~~~ 66 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-------------------VEL-----DRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-------------------HHH-----HHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-------------------HHH-----HHHHHHHH
Confidence 3455666677777777777777777665420 0000000 000 122 3478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-L-STFVHLIKG 963 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~ 963 (997)
..++.+|.+.|++++|+..+++++..+|. +..+|..++.++...|++++|+..|+++++ +.|+ . .+...|..+
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLKREET---NEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Confidence 88999999999999999999999998876 889999999999999999999999999999 6786 4 456566666
Q ss_pred HHhcC
Q 001911 964 LIRVN 968 (997)
Q Consensus 964 y~~~g 968 (997)
..+.+
T Consensus 142 ~~~~~ 146 (162)
T 3rkv_A 142 TERRA 146 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=1.1e-05 Score=75.62 Aligned_cols=142 Identities=18% Similarity=0.123 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
..++..+...+...|++++|...+++..+.. .+.. ........+..++..|.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~--~~~~~~~~~~~l~~~~~ 60 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--------------------------KEFG--DKAAERIAYSNLGNAYI 60 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------HHHT--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------------------------HHhC--CchHHHHHHHHHHHHHH
Confidence 4567788888999999999999998876421 0000 00000136778999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNS---AASRNSTLLLIESLSLARKIDKAFELYVDMIRKD----GSPE-LSTFVHLIKGLI 965 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~y~ 965 (997)
..|++++|++.++++....+.. .....++..++.++...|++++|...++++++.. ..+. ..++..++.+|.
T Consensus 61 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 61 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 9999999999999987643211 1125577889999999999999999999988631 1111 457889999999
Q ss_pred hcCCHHHHHHHHHHhhcc
Q 001911 966 RVNKWEEALQLSYSICHT 983 (997)
Q Consensus 966 ~~g~~~eA~~~~~~~~~~ 983 (997)
..|++++|.+.+++....
T Consensus 141 ~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 999999999999987653
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.6e-06 Score=75.60 Aligned_cols=94 Identities=9% Similarity=-0.040 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------H
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-------L 954 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~ 954 (997)
...+..++..+...|++++|++.|+++.+..|. +..++..++.++...|++++|++.++++++ ..|+ .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~ 78 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHH
Confidence 456788999999999999999999999998775 788999999999999999999999999999 6675 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 955 STFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 955 ~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
.++..++.++...|++++|+..++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 67889999999999988887766654
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.16 E-value=2.2e-06 Score=75.70 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=44.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 001911 895 AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 895 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA 973 (997)
.|++++|++.|+++.+..+..+.+..++..++.++...|++++|+..++++++ ..|+ ..++..++.+|...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHHHH
Confidence 35555555666555554210012445555555555555666666666666555 3453 55555566666666666666
Q ss_pred HHHHHHhhc
Q 001911 974 LQLSYSICH 982 (997)
Q Consensus 974 ~~~~~~~~~ 982 (997)
+..+++.+.
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555543
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=7.6e-05 Score=83.43 Aligned_cols=172 Identities=10% Similarity=0.017 Sum_probs=112.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCC-HHH
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEK-GCYPNV----VTYTAMIDGFGKVGKVDKCLELLRQMSS----KGCAPN-FVT 816 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~~ 816 (997)
+..++..|.+.|++++|.+.+.++... +..++. ...+.+...+...|++++|++++++... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 566777888888888888888776542 111122 1223333344566888888888887654 233333 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhc
Q 001911 817 YRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKA 895 (997)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 895 (997)
+..+...+...|++++|..++++....... .+..+. ...+..++..|...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 188 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKK-----------------------------LDDKPSLVDVHLLESKVYHKL 188 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-----------------------------SSCSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHh-----------------------------cccchhHHHHHHHHHHHHHHh
Confidence 778888899999999999988876542110 011122 34677788889999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCc----chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 896 GRLEVALELHEEMTSFSSNSAA----SRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
|++++|...++++....+.... ....+..++..+...|++++|...+.++.+
T Consensus 189 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 189 RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999998887754221111 134555666677778899999888887765
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.10 E-value=4.4e-06 Score=89.62 Aligned_cols=98 Identities=9% Similarity=-0.003 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIK 962 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 962 (997)
.|..++.+|.+.|++++|+..++++++..|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..++..|..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRA 306 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 6788999999999999999999999998775 889999999999999999999999999998 6785 677888888
Q ss_pred H-HHhcCCHHHHHHHHHHhhccCCc
Q 001911 963 G-LIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 963 ~-y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+ ....+..+++...++++.+....
T Consensus 307 l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 307 LAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 7 44567788899999988775543
No 187
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.06 E-value=2.2e-05 Score=68.01 Aligned_cols=99 Identities=12% Similarity=-0.045 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...+..+...+...|++++|...+++..+.. +.+...+..++.+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~~a~~~~ 51 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD----------------------------------PEESKYWLMKGKALY 51 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC----------------------------------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------------------------------cCCHHHHHHHHHHHH
Confidence 3445556666666666666666666655432 122345556666666
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA-RKIDKAFELYVDMIR 947 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 947 (997)
..|++++|++.++++.+..|. ..+...+..++.++... |++++|.+.++++++
T Consensus 52 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 52 NLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 666777777666666665432 11455666666666666 677777776666666
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=7.8e-06 Score=72.02 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=71.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
..|++++|+..+++..+... ..|+ ...+..++.+|...|++++|++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~--------------------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 49 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL--------------------------------QGKDLAECYLGLGSTFRTLGEYRKAEAV 49 (117)
T ss_dssp -----CCCHHHHHHHHSSCC--------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC--------------------------------CCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35778888888888765320 0132 34788899999999999999999
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 905 HEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
++++.+..|. +..++..++.++...|++++|+..++++++ ..|+
T Consensus 50 ~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~ 93 (117)
T 3k9i_A 50 LANGVKQFPN---HQALRVFYAMVLYNLGRYEQGVELLLKIIA--ETSD 93 (117)
T ss_dssp HHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCC
T ss_pred HHHHHHhCCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 9999998876 788999999999999999999999999998 4564
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.00 E-value=0.00012 Score=84.02 Aligned_cols=173 Identities=11% Similarity=0.004 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 001911 724 RLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGK----------TEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVG 793 (997)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 793 (997)
..++|++.++++++.. +-+...|+.-...+.+.|+ ++++++.++++.+...+ +..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3456677777777653 3345566666666666666 88899999988887555 7778888777888888
Q ss_pred --CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHH
Q 001911 794 --KVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASG-LLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGL 869 (997)
Q Consensus 794 --~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 869 (997)
+++++++.++++.+. .| |..+|+.-..++.+.| .+++++++++++.+..
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~------------------------- 174 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------------------------- 174 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-------------------------
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-------------------------
Confidence 679999999999886 34 7888888888888888 8888888888877643
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCH
Q 001911 870 VNEMGKTDSVPIVPAYRILIDHYIKA--------------GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKI 935 (997)
Q Consensus 870 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 935 (997)
+.+..+|+..+.++.+. +.+++|++.++++....|+ +..+|..+.+.+.+.+++
T Consensus 175 ---------p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~---~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 175 ---------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN---DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp ---------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS---CSHHHHHHHHHHSCCCCC
T ss_pred ---------CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC---CccHHHHHHHHHhcCCCc
Confidence 22344566666555542 5689999999999998886 899999999999888875
Q ss_pred HH
Q 001911 936 DK 937 (997)
Q Consensus 936 ~~ 937 (997)
++
T Consensus 243 ~~ 244 (567)
T 1dce_A 243 DV 244 (567)
T ss_dssp SC
T ss_pred cc
Confidence 55
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.99 E-value=2e-05 Score=84.56 Aligned_cols=152 Identities=14% Similarity=0.006 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001911 744 VVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINH 823 (997)
Q Consensus 744 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~ 823 (997)
...+..+...+.+.|++++|...|++..+. .|+.. .+...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344555555666666666666666666553 22221 1223333333332221 1378889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001911 824 CCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALE 903 (997)
Q Consensus 824 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 903 (997)
|.+.|++++|+..+++..+.. +.+..+|..++.+|...|++++|++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~a~~~lg~a~~~~g~~~~A~~ 285 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE----------------------------------EKNPKALFRRGKAKAELGQMDSARD 285 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987643 2345688899999999999999999
Q ss_pred HHHHHhcCCCCCCcchhhHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 904 LHEEMTSFSSNSAASRNSTLLLIESL-SLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.|+++.+..|. +..++..+..+. ...+..+++.+.|+++.. ..|+
T Consensus 286 ~l~~al~l~p~---~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~--~~p~ 331 (338)
T 2if4_A 286 DFRKAQKYAPD---DKAIRRELRALAEQEKALYQKQKEMYKGIFK--GKDE 331 (338)
T ss_dssp HHHHTTC--------------------------------------------
T ss_pred HHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCC
Confidence 99999998775 677777777764 345778899999999988 5564
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.0021 Score=71.45 Aligned_cols=197 Identities=11% Similarity=-0.003 Sum_probs=143.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC
Q 001911 646 IDGLCKVHKVREAHDLLDAMSVVGCEPN----------------NIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCN-PN 708 (997)
Q Consensus 646 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 708 (997)
...+.+.|++++|.+.|..+.+...... ...+..++..|...|++++|.+.+..+.+.-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3457889999999999999987542211 134778999999999999999999987763211 12
Q ss_pred HH----hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--
Q 001911 709 VY----TYGSLIDRLFKDKRLDLALKVISKMLE----DSYAP-NVVIYTEMIDGLIKVGKTEEAYKVMLMMEEK--GC-- 775 (997)
Q Consensus 709 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 775 (997)
.. +.+.+...+...|+.+.|..+++.... .+..+ -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 223333344467899999999988764 22222 2467788999999999999999999988753 11
Q ss_pred CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 776 YP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSK--GC-AP-N--FVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 776 ~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
.+ ....+..++..|...|++++|..++++.... .+ .| . ...+..++..+...|++++|...+.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2457888889999999999999999887652 11 22 1 45677778888899999999999888754
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=4.7e-05 Score=71.19 Aligned_cols=139 Identities=11% Similarity=0.066 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 001911 780 VTYTAMIDGFGKVGKVDKCLELLRQMSSKGC-APN----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRK 854 (997)
Q Consensus 780 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 854 (997)
.++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|..++++.....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---------- 79 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA---------- 79 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------
Confidence 3556666677777788888777777665310 011 2477888899999999999999998876421
Q ss_pred HHHhHhHhHHHHHHHHHHhccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CCCcchhhHHHHHHHHH
Q 001911 855 VIEGFSREFIVSLGLVNEMGKTDSVP-IVPAYRILIDHYIKAGRLEVALELHEEMTSFSS---NSAASRNSTLLLIESLS 930 (997)
Q Consensus 855 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 930 (997)
... +..+ ....+..++..+...|++++|++.++++.+..+ ........+..++..+.
T Consensus 80 ----------------~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 80 ----------------RQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ----------------HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------HHh---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 000 0011 123577899999999999999999999876421 11123567788999999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 001911 931 LARKIDKAFELYVDMIR 947 (997)
Q Consensus 931 ~~g~~~~A~~~~~~~~~ 947 (997)
..|++++|...++++++
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 99999999999999886
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=1.3e-05 Score=90.42 Aligned_cols=118 Identities=11% Similarity=0.099 Sum_probs=67.6
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHH
Q 001911 787 DGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIV 865 (997)
Q Consensus 787 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (997)
..+.+.|++++|++.|++.++. .| +...|..+..+|.+.|++++|+..+++..+..
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------------------- 70 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--------------------- 70 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---------------------
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------------
Confidence 3345566666666666666654 34 45666666666666666666666666655432
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH--HHhcCCHHHHHHHHH
Q 001911 866 SLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIES--LSLARKIDKAFELYV 943 (997)
Q Consensus 866 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 943 (997)
+.+...+..++.+|...|++++|++.++++.+..|. +...+..++.+ +...|++++|++.++
T Consensus 71 -------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 71 -------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 122345566666666666666666666666665544 44455555554 555666666666666
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.93 E-value=6.6e-05 Score=84.21 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHYI 893 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 893 (997)
...|..+..+|.+.|++++|+..+++..+.. +.+..+|..++.+|.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~a~~~~g~a~~ 362 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD----------------------------------SANEKGLYRRGEAQL 362 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----------------------------------CccHHHHHHHHHHHH
Confidence 5788899999999999999999999987643 234568889999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHH-HHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFE-LYVDMIR 947 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 947 (997)
..|++++|+..|+++++..|. +..++..++.++...+++++|.+ .|++|..
T Consensus 363 ~~g~~~~A~~~~~~al~l~P~---~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 363 LMNEFESAKGDFEKVLEVNPQ---NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876 77899999999999999887764 5666654
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.93 E-value=0.00013 Score=81.48 Aligned_cols=133 Identities=12% Similarity=0.043 Sum_probs=99.5
Q ss_pred HHhccCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHh
Q 001911 788 GFGKVGKVDKCLELLRQMSSK---GCAPN----FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFS 860 (997)
Q Consensus 788 ~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 860 (997)
.+...|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------- 380 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------- 380 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 456789999999999887752 22232 568899999999999999999999987642
Q ss_pred HhHHHHHHHHHHhccCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhcC-----CCCCCcchhhHHHHHHHHHhcCC
Q 001911 861 REFIVSLGLVNEMGKTDSVPIV-PAYRILIDHYIKAGRLEVALELHEEMTSF-----SSNSAASRNSTLLLIESLSLARK 934 (997)
Q Consensus 861 ~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~ 934 (997)
..+..... .|+. .+++.|+..|..+|++++|+.+++++.+. +++.+.-..+...+..++...++
T Consensus 381 ---------~~~~lG~~-Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 381 ---------YMKLYHHN-NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp ---------HHHHSCTT-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 11222111 2332 37889999999999999999999998753 44433344555677777788899
Q ss_pred HHHHHHHHHHHHH
Q 001911 935 IDKAFELYVDMIR 947 (997)
Q Consensus 935 ~~~A~~~~~~~~~ 947 (997)
+++|+.+|.++.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.92 E-value=6.6e-05 Score=62.16 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHL 960 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 960 (997)
...+..++..+...|++++|++.++++....|. +..++..++.++...|++++|+..++++++ ..|+ ..++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHH
Confidence 346788999999999999999999999988765 788899999999999999999999999999 5675 7889999
Q ss_pred HHHHHhcC
Q 001911 961 IKGLIRVN 968 (997)
Q Consensus 961 ~~~y~~~g 968 (997)
+.+|.+.|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99987765
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.91 E-value=7.6e-05 Score=83.34 Aligned_cols=133 Identities=11% Similarity=-0.001 Sum_probs=101.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 001911 823 HCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVA 901 (997)
Q Consensus 823 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 901 (997)
.+..+|++++|+.++++..+..- +... ...|+ ..+++.|+..|..+|++++|
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~--------------------------~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA 370 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQE--------------------------PVFA-DTNLYVLRLLSIASEVLSYLQAYEEA 370 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHT--------------------------TTBC-TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH--------------------------HhcC-CCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 46688999999999988765310 0000 00122 23788999999999999999
Q ss_pred HHHHHHHhcC-----CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCC
Q 001911 902 LELHEEMTSF-----SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK---DGSPE----LSTFVHLIKGLIRVNK 969 (997)
Q Consensus 902 ~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~y~~~g~ 969 (997)
+.+++++++. +++.+.-..+++.|+..|...|++++|+.+|+++++- -+=|| ......|..++.+.|+
T Consensus 371 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 371 SHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999998753 5554455678889999999999999999999998751 12244 3467789999999999
Q ss_pred HHHHHHHHHHhhc
Q 001911 970 WEEALQLSYSICH 982 (997)
Q Consensus 970 ~~eA~~~~~~~~~ 982 (997)
+++|..++.++.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.88 E-value=9.1e-05 Score=80.22 Aligned_cols=91 Identities=7% Similarity=-0.107 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...|..+..+|.+.|++++|+..+++..+.. +.+..+|..++.+|
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~a~~~lg~~~ 317 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID----------------------------------PSNTKALYRRAQGW 317 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC----------------------------------chhHHHHHHHHHHH
Confidence 46778888999999999999999999887642 22355788899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFE 940 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 940 (997)
...|++++|++.++++.+..|. +..++..+..++...++.+++.+
T Consensus 318 ~~~g~~~eA~~~l~~Al~l~P~---~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 318 QGLKEYDQALADLKKAQEIAPE---DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988775 77788888888888887777654
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.86 E-value=4.4e-05 Score=66.83 Aligned_cols=63 Identities=13% Similarity=0.021 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 882 VPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 882 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
...+..++..|...|++++|++.++++....|. +...|..++.++...|++++|...|+++++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666666666666666666666666665554 555666666666666666666666666665
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.85 E-value=1.5e-05 Score=72.53 Aligned_cols=89 Identities=9% Similarity=-0.024 Sum_probs=68.5
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARK----------IDKAFELYVDMIRKDGSPE-LSTFVHLI 961 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 961 (997)
.+.+.+++|++.++++.+..|+ +...|..++.++...++ +++|+..|+++++ +.|+ ..+|+.++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence 3556778888888888887775 77788888887777665 4588888888888 6786 77888888
Q ss_pred HHHHhcC-----------CHHHHHHHHHHhhccCCc
Q 001911 962 KGLIRVN-----------KWEEALQLSYSICHTDIN 986 (997)
Q Consensus 962 ~~y~~~g-----------~~~eA~~~~~~~~~~~~~ 986 (997)
.+|...| ++++|++.+++.++....
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 8888774 788888888887776554
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.00013 Score=66.17 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHH
Q 001911 793 GKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNE 872 (997)
Q Consensus 793 g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 872 (997)
+++++|+++|++..+.| .|... +...|...+.+++|..++++..+.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----------------------------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-----------------------------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-----------------------------
Confidence 45566666666666655 33332 555555555666666666655442
Q ss_pred hccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHH
Q 001911 873 MGKTDSVPIVPAYRILIDHYIK----AGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKAFELYVD 944 (997)
Q Consensus 873 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 944 (997)
.+..++..|+.+|.. .+++++|++.|+++.+.. +...+..|+..|.. .+++++|...|++
T Consensus 55 -------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 55 -------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp -------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 233445556666665 566666666666666542 55566666666666 5666666666666
Q ss_pred HHHcC
Q 001911 945 MIRKD 949 (997)
Q Consensus 945 ~~~~~ 949 (997)
+.+.|
T Consensus 123 Aa~~g 127 (138)
T 1klx_A 123 ACRLG 127 (138)
T ss_dssp HHHTT
T ss_pred HHHCC
Confidence 66643
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.79 E-value=0.00028 Score=63.93 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=81.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 888 LIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL----ARKIDKAFELYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 888 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
|+..|...+..++|++.|+++.+.. +...+..|+..|.. .+++++|+..|+++.+.| ++.++..|+.+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~ 102 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYK 102 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHH
Confidence 8888988899999999999999874 78899999999988 789999999999999954 67889999999
Q ss_pred HHh----cCCHHHHHHHHHHhhccCCc
Q 001911 964 LIR----VNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 964 y~~----~g~~~eA~~~~~~~~~~~~~ 986 (997)
|.. .+++++|..++++..+.|-.
T Consensus 103 y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 103 QYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 999 89999999999999887643
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.76 E-value=7.8e-05 Score=67.76 Aligned_cols=72 Identities=8% Similarity=0.118 Sum_probs=61.8
Q ss_pred ChhhHHHHHHHHHhcCCH----------HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC-----------CHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRL----------EVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR-----------KIDKAF 939 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~ 939 (997)
+...|..++.++...+++ ++|+..|+++++.+|+ +..+|..++.+|...| ++++|+
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~ 111 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT 111 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence 456888899888888764 6999999999999886 8899999999998874 899999
Q ss_pred HHHHHHHHcCCCCCHHHH
Q 001911 940 ELYVDMIRKDGSPELSTF 957 (997)
Q Consensus 940 ~~~~~~~~~~~~p~~~~~ 957 (997)
+.|+++++ +.|+...|
T Consensus 112 ~~~~kAl~--l~P~~~~y 127 (158)
T 1zu2_A 112 QFFQQAVD--EQPDNTHY 127 (158)
T ss_dssp HHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHH--hCCCCHHH
Confidence 99999999 78975444
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.59 E-value=0.00022 Score=60.40 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=65.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKD-GSPELSTFVH 959 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ 959 (997)
+...+..++.+|...|++++|++.|+++.+..|. +..+|..++.+|...|++++|++.|+++++.. ..++......
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 3457888999999999999999999999998876 77789999999999999999999999998731 1123444444
Q ss_pred HHHHHHhc
Q 001911 960 LIKGLIRV 967 (997)
Q Consensus 960 l~~~y~~~ 967 (997)
+...+.+.
T Consensus 83 l~~~l~~~ 90 (100)
T 3ma5_A 83 LQDAKLKA 90 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 44444433
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.0002 Score=62.56 Aligned_cols=80 Identities=16% Similarity=0.012 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 001911 900 VALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSY 978 (997)
Q Consensus 900 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~ 978 (997)
+|++.++++.+..|. +...+..++.++...|++++|+..++++++ ..|+ ..++..++.+|...|++++|...++
T Consensus 3 ~a~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTD---NMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578899999988775 788999999999999999999999999999 5675 7899999999999999999999999
Q ss_pred HhhccC
Q 001911 979 SICHTD 984 (997)
Q Consensus 979 ~~~~~~ 984 (997)
+.....
T Consensus 78 ~al~~~ 83 (115)
T 2kat_A 78 SGLAAA 83 (115)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887643
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.56 E-value=0.00019 Score=60.79 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=59.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 001911 918 SRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 918 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
+...+..++.++...|++++|+..++++++ ..|+ ..+|..++.+|...|++++|++.+++.+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 788999999999999999999999999999 6685 789999999999999999999999988754
No 207
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.48 E-value=7.3e-05 Score=64.69 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...+..+...+...|++++|...+++..... +.+...+..++.+|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~lg~~~ 48 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----------------------------------PQNPVGYSNKAMAL 48 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------------------CCCHHHHHHHHHHH
Confidence 45567777888888888888888888776532 22345677788888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcc---hhhHHHHHHHHHhcCCHHHHHHHHH
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAAS---RNSTLLLIESLSLARKIDKAFELYV 943 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 943 (997)
...|++++|++.++++.+..|..... ...+..++.++...|++++|+..++
T Consensus 49 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 49 IKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 88888888888888888876641000 5556666666666666665555443
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.46 E-value=0.00017 Score=60.81 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNSAASRN-STLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGL 964 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y 964 (997)
..+..+...|++++|++.++++.+..|. +.. .+..++.++...|++++|++.|+++++ ..|+ ..++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~----- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE--LNPDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSTHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHH-----
Confidence 4678889999999999999999988765 677 899999999999999999999999999 5686 444422
Q ss_pred HhcCCHHHHHHHHHHhhc
Q 001911 965 IRVNKWEEALQLSYSICH 982 (997)
Q Consensus 965 ~~~g~~~eA~~~~~~~~~ 982 (997)
+.+.+++..++++..
T Consensus 75 ---~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMY 89 (99)
T ss_dssp ---HHHHHHHHHHCCTTH
T ss_pred ---HHHHHHHHHHHHHhc
Confidence 567777777776544
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.28 E-value=0.0017 Score=53.29 Aligned_cols=84 Identities=18% Similarity=0.125 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001911 813 NFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILIDHY 892 (997)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 892 (997)
+...+..+...+...|++++|...+++..... +.+...+..++.+|
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~l~~~~ 53 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------------------PNNAEAWYNLGNAY 53 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----------------------------------CCCHHHHHHHHHHH
Confidence 35678888899999999999999999887642 22345788899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC
Q 001911 893 IKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR 933 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 933 (997)
...|++++|++.++++.+..|. +...+..++.++...|
T Consensus 54 ~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 54 YKQGDYDEAIEYYQKALELDPN---NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcC
Confidence 9999999999999999988765 7778888887776543
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.20 E-value=0.00088 Score=73.40 Aligned_cols=90 Identities=9% Similarity=-0.033 Sum_probs=69.0
Q ss_pred hcCCHHHHHHHHHHHhcC-----CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTSF-----SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK-----D-GSPE-LSTFVHLI 961 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~ 961 (997)
..|++++|+.+++++++. .++.+.-..+++.|+.+|...|++++|+.+++++++. | ..|+ ...++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999887653 3433334577888999999999999999999998752 1 1333 35788999
Q ss_pred HHHHhcCCHHHHHHHHHHhhcc
Q 001911 962 KGLIRVNKWEEALQLSYSICHT 983 (997)
Q Consensus 962 ~~y~~~g~~~eA~~~~~~~~~~ 983 (997)
.+|..+|++++|..++++.+..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.05 E-value=0.002 Score=70.81 Aligned_cols=94 Identities=7% Similarity=-0.070 Sum_probs=73.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcC-----CCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC---C-HHH
Q 001911 889 IDHYIKAGRLEVALELHEEMTSF-----SSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK---DGSP---E-LST 956 (997)
Q Consensus 889 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p---~-~~~ 956 (997)
+..+..+|++++|+++++++++. ++..+.-..+++.|+.+|...|++++|+.+++++++. -+-| + ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34566789999999999998764 2333334567888999999999999999999988752 1223 3 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
++.|+.+|..+|++++|..++++.+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999988765
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.02 E-value=0.0022 Score=57.44 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHHHH
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLAR---KIDKAFELYVDMIRKDGSP-E-LSTFVHLIKGLIRVNKWEEA 973 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~y~~~g~~~eA 973 (997)
..+.+.|++..+.++ ++..+...+++++.+.+ +.++++.+++++.+.+ .| + ...++.|+-+|.+.|++++|
T Consensus 15 ~~~~~~y~~e~~~~~---~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHTTC---CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHccCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 344555555544332 36666666777777766 4557777777777642 25 2 45667777777777777777
Q ss_pred HHHHHHhhccCCccch
Q 001911 974 LQLSYSICHTDINWLQ 989 (997)
Q Consensus 974 ~~~~~~~~~~~~~~~~ 989 (997)
+++++.+++....|.+
T Consensus 91 ~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhcCCCCHH
Confidence 7777777776666644
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.99 E-value=0.0018 Score=70.94 Aligned_cols=95 Identities=11% Similarity=-0.063 Sum_probs=72.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 001911 826 ASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHYIKAGRLEVALEL 904 (997)
Q Consensus 826 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 904 (997)
..|++++|+.++++..+... +.... ..|+ ..+++.|+.+|..+|++++|+.+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~--------------------------~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~ 362 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS--------------------------SVFED-SNVYMLHMMYQAMGVCLYMQDWEGALKY 362 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT--------------------------TTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhh--------------------------CccCh-hchHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 45789999999988764210 00000 0122 23788999999999999999999
Q ss_pred HHHHhc-----CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 905 HEEMTS-----FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 905 ~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++++++ .+++.+.-...++.|+..|..+|++++|+.+|+++++
T Consensus 363 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 363 GQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 999875 3455455577888999999999999999999999976
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.0059 Score=67.03 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=76.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcC
Q 001911 821 INHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI----VPAYRILIDHYIKAG 896 (997)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 896 (997)
+..+..+|++++|+.++++..+..... +.|+ ..+++.|+..|..+|
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~------------------------------lg~~h~~~~~~~~~L~~~y~~~g 343 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSER------------------------------LPDINIYQLKVLDCAMDACINLG 343 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCC------------------------------CCTTSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCc------------------------------CCccchHHHHHHHHHHHHHHhhc
Confidence 445667899999999999887543111 1122 237888999999999
Q ss_pred CHHHHHHHHHHHhc-----CCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 897 RLEVALELHEEMTS-----FSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 897 ~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
++++|+.++++++. .++..+.-...++.|+..|...|++++|+.+|+++++
T Consensus 344 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 344 LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999875 3455445567888999999999999999999999876
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.90 E-value=0.0033 Score=51.83 Aligned_cols=64 Identities=8% Similarity=0.081 Sum_probs=39.9
Q ss_pred ChhhHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 881 IVPAYRILIDHYIKAGR---LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
+...+..++.++...++ .++|..+++++++.+|. +......++..+...|++++|+..|+++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455556655544433 56666666666666654 666666666666666666666666666666
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.72 E-value=0.0054 Score=50.52 Aligned_cols=68 Identities=10% Similarity=0.063 Sum_probs=60.4
Q ss_pred cchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 917 ASRNSTLLLIESLSLARK---IDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 917 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
.+...+..++.++...++ .++|..+++++++ ..|+ +.+...++..+++.|++++|+..|++++..+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 478889999998865544 7999999999999 7796 899999999999999999999999999987765
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.60 E-value=0.016 Score=60.54 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=63.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHL 960 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 960 (997)
+...|..++..+...|++++|+..++++...+| +...|..+++.+...|++++|.+.|+++.. +.|...+|...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~----s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM----SWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 344677777777778999999999999999863 567788899999999999999999999999 78987665544
Q ss_pred HHH
Q 001911 961 IKG 963 (997)
Q Consensus 961 ~~~ 963 (997)
..+
T Consensus 350 ~~l 352 (372)
T 3ly7_A 350 ENG 352 (372)
T ss_dssp HHS
T ss_pred hCc
Confidence 433
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.49 E-value=0.0069 Score=50.62 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhhccCCccc
Q 001911 924 LLIESLSLARKIDKAFELYVDMIRKDGSPE-LS-TFVHLIKGLIRVNKWEEALQLSYSICHTDINWL 988 (997)
Q Consensus 924 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~ 988 (997)
..+..+...|++++|+..++++++ ..|+ .. ++..++.+|...|++++|++.+++.+.......
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 467778899999999999999999 5685 77 999999999999999999999999988766543
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.36 E-value=0.055 Score=56.59 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCChhhHHHHHH
Q 001911 811 APNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIVPAYRILID 890 (997)
Q Consensus 811 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 890 (997)
..+..+|..+...+...|++++|...++++... .|+...|..++.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-----------------------------------n~s~~a~~llG~ 318 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-----------------------------------EMSWLNYVLLGK 318 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------------------------CCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----------------------------------CCCHHHHHHHHH
Confidence 346778888877777779999999999888764 266667778888
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCC
Q 001911 891 HYIKAGRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 891 ~~~~~g~~~~A~~~~~~~~~~~~~ 914 (997)
.+.-.|++++|++.|+++...+|.
T Consensus 319 ~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 319 VYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC
Confidence 899999999999999998888763
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.17 E-value=0.025 Score=47.77 Aligned_cols=75 Identities=13% Similarity=-0.032 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCC----CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSS----NSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE-LSTFV 958 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 958 (997)
-...|+..+.+.|+++.|+..++.+.+..+ .......++..|+.++.+.|++++|+..++++++ +.|+ ..+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~ 84 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHh
Confidence 456799999999999999999999886421 1235778899999999999999999999999999 7886 44444
Q ss_pred HH
Q 001911 959 HL 960 (997)
Q Consensus 959 ~l 960 (997)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.08 E-value=0.23 Score=60.12 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 001911 713 GSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKV 792 (997)
Q Consensus 713 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 792 (997)
..++..+.+.|..+.|+++.+. |. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4445555556666665544421 10 0112233456666666554332 2455566666666666
Q ss_pred CCHHHHHHHHHHHH
Q 001911 793 GKVDKCLELLRQMS 806 (997)
Q Consensus 793 g~~~~A~~l~~~m~ 806 (997)
|+++.|.+.|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 66666666665543
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.06 E-value=0.32 Score=58.85 Aligned_cols=154 Identities=16% Similarity=0.095 Sum_probs=103.3
Q ss_pred HHHHcCChHHHHH-HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHH
Q 001911 209 KCCRNGFWNVALE-ELGRLKDFGYKPTQAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWK 287 (997)
Q Consensus 209 ~y~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 287 (997)
.....+++++|.+ ++.. + |+......++..+.+.|..+.|..+.+.. ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence 3345788888876 4421 1 11223377778888888888887665321 11234456789999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 001911 288 EALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEG 367 (997)
Q Consensus 288 ~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 367 (997)
+|.++.+.. .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+....+.+.....|
T Consensus 670 ~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 670 LARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999998773 4678999999999999999999999998754 3445555555777776666655555554
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001911 368 CYPSPRIFHSLIHAYCRSGDYSYAYKLLSKM 398 (997)
Q Consensus 368 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (997)
-++.....|.+.|++++|.+++.++
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2344455566677777777766544
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.85 E-value=0.035 Score=47.72 Aligned_cols=91 Identities=20% Similarity=0.159 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCH
Q 001911 896 GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDK---AFELYVDMIRKDGSPE--LSTFVHLIKGLIRVNKW 970 (997)
Q Consensus 896 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~g~~ 970 (997)
..+..+.+.|++....++ ++..+-..++|++.+..+.+. ++.+++.+.+.+ .|+ ....+.|+-++.+.|+|
T Consensus 15 ~~l~~~~~~y~~e~~~~~---~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 344455555665554332 466777778888877765444 788888877742 242 45777888888888888
Q ss_pred HHHHHHHHHhhccCCccchh
Q 001911 971 EEALQLSYSICHTDINWLQE 990 (997)
Q Consensus 971 ~eA~~~~~~~~~~~~~~~~~ 990 (997)
++|.++++.+++....|.+.
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHH
Confidence 88888888888877776543
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.51 E-value=0.066 Score=47.97 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=60.1
Q ss_pred CChhhHHHHHHHHHhcC---CHHHHHHHHHHHhcCC-CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 880 PIVPAYRILIDHYIKAG---RLEVALELHEEMTSFS-SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
++..+...++.++.+.+ +.++++.+++...+.. |. .+...+..|+-++.+.|++++|.++++.+++ ..|+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--chHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 67777788999999988 6779999999998765 31 2577888899999999999999999999999 7896
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.18 E-value=0.066 Score=45.08 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=56.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 001911 918 SRNSTLLLIESLSLARKIDKAFELYVDMIRKD-----GSP-ELSTFVHLIKGLIRVNKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 918 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p-~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~ 986 (997)
+..-...++..+...|+++.|+..|+++++.- ..+ ...++..|+.+|.+.|++++|+.++++++.....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 34456678999999999999999999998742 112 3678999999999999999999999998765543
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.08 E-value=1.2 Score=40.87 Aligned_cols=127 Identities=12% Similarity=0.120 Sum_probs=78.5
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHH
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLG 868 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 868 (997)
....|+++.|.++.+++ .+...|..|.+.....|+++-|...|.+...
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------------------- 62 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------------------------- 62 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------------------------
Confidence 35678888888877665 3567788888888888888888888876532
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 869 LVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 869 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
+..|.-.|.-.|+.+.-.++.+.+.... -++.-..++...|++++++++|.+.
T Consensus 63 ----------------~~~L~~Ly~~tg~~e~L~kla~iA~~~g--------~~n~af~~~l~lGdv~~~i~lL~~~--- 115 (177)
T 3mkq_B 63 ----------------FDKLSFLYLVTGDVNKLSKMQNIAQTRE--------DFGSMLLNTFYNNSTKERSSIFAEG--- 115 (177)
T ss_dssp ----------------HHHHHHHHHHHTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHTCHHHHHHHHHHT---
T ss_pred ----------------HHHHHHHHHHhCCHHHHHHHHHHHHHCc--------cHHHHHHHHHHcCCHHHHHHHHHHC---
Confidence 3456666777777766666555554432 1233333445678888888776543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 949 DGSPELSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 949 ~~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
|..|.. ..+++. -|-.+.|.++.+.+
T Consensus 116 ~r~~eA---~~~A~t---~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 116 GSLPLA---YAVAKA---NGDEAAASAFLEQA 141 (177)
T ss_dssp TCHHHH---HHHHHH---TTCHHHHHHHHHHT
T ss_pred CChHHH---HHHHHH---cCcHHHHHHHHHHh
Confidence 222321 112222 35566676666654
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.07 E-value=0.048 Score=54.50 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhc-----CCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 001911 884 AYRILIDHYIKA-----GRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA-RKIDKAFELYVDMIR 947 (997)
Q Consensus 884 ~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 947 (997)
.|..|+..|... |+.++|.+.|+++++..|+ .+..++..++..++.. |++++|.+.+++++.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~--~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA--HDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT--TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 455555555553 5666666666666665543 1244555555555553 566666666666665
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.99 E-value=0.17 Score=43.66 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=55.0
Q ss_pred cchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccchh
Q 001911 917 ASRNSTLLLIESLSLARK---IDKAFELYVDMIRKDGSPE--LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQE 990 (997)
Q Consensus 917 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~ 990 (997)
+...+-..++|++.+..+ ..+++.+++.+.+.+ |+ ...++.|+-++.+.|+|++|.++.+.+++....+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 566777778888877754 567888888888743 63 5678888888888888888888888888887777654
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.96 E-value=0.12 Score=51.62 Aligned_cols=67 Identities=10% Similarity=0.002 Sum_probs=53.8
Q ss_pred chhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHhhccCCc
Q 001911 918 SRNSTLLLIESLSL-----ARKIDKAFELYVDMIRKDGSPE--LSTFVHLIKGLIRV-NKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 918 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~-g~~~eA~~~~~~~~~~~~~ 986 (997)
+...|..|+..|.. -|+.++|.++|+++++ +.|+ ..+++.+++.|+.. |++++|.+++++.+.....
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45577777777777 4899999999999999 7784 67888888988885 8899999999988876554
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.84 E-value=0.23 Score=43.44 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=48.7
Q ss_pred cchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCccchh
Q 001911 917 ASRNSTLLLIESLSLARK---IDKAFELYVDMIRKDGSPE--LSTFVHLIKGLIRVNKWEEALQLSYSICHTDINWLQE 990 (997)
Q Consensus 917 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~y~~~g~~~eA~~~~~~~~~~~~~~~~~ 990 (997)
++..+-..++|++.+..+ ..+++.+++.+.+. .|+ ....+.|+-++.+.|+|++|.++.+.+++....|.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 466666667777776653 45677777777763 352 4567777777777777777777777777777666543
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.82 E-value=0.17 Score=45.63 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=72.3
Q ss_pred CCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCC---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001911 877 DSVPIVP--AYRILIDHYIKAGRLEVALELHEEMTSFS---SNSA---ASRNSTLLLIESLSLARKIDKAFELYVDMIRK 948 (997)
Q Consensus 877 ~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 948 (997)
|+.|.-. ++..-+..+...|.++.|+-+.+.+.... +... ....++..++.++...|+|..|...|++++..
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4455543 34455677888999999999988876542 1110 11236678899999999999999999997431
Q ss_pred C------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 949 D------------------------GSPELSTFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 949 ~------------------------~~p~~~~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
. ..+|.+.-+.++.+|.+.|++++|+..++.|-.
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0 111246778899999999999999999996643
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.82 E-value=8.8 Score=45.47 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCH--HhH
Q 001911 643 GALIDGLCKVHKVREAHDLLDAMSVVGC-------EPNNIVYDALIDGFCKVGK-LDEAQMVFSKMLEHGCNPNV--YTY 712 (997)
Q Consensus 643 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~--~~~ 712 (997)
..+.-++...|..+++.+++.......- .+....-.++.-++.-.|. -+++.+.+..++...- +.. ..-
T Consensus 415 AllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~Aa 493 (963)
T 4ady_A 415 SLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAA 493 (963)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 3344456666766677777776654321 0111112233333333342 2455666666555321 111 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHH---HHHHH
Q 001911 713 GSLIDRLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVV-TYT---AMIDG 788 (997)
Q Consensus 713 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~---~li~~ 788 (997)
.++...+...|+.+....++..+.+.. ..+..-.-.+.-++...|+.+.+..+.+.+... .++. -|. ++.-+
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglA 569 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALA 569 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHH
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 233334556677777777777766542 122222333334444678888888777777753 1322 222 23345
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001911 789 FGKVGKVDKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLE 838 (997)
Q Consensus 789 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 838 (997)
|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+..+++
T Consensus 570 yaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 570 YAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp TTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 667778766666887777641 1122222233333444555544444443
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.71 E-value=1 Score=41.45 Aligned_cols=86 Identities=10% Similarity=-0.030 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--H--
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELS--T-- 956 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~-- 956 (997)
+...|..|++....+|+++-|++.|++.... ..+...|...|+.+.-.++.+.+..+|- -+.. .
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----------~~L~~Ly~~tg~~e~L~kla~iA~~~g~-~n~af~~~l 100 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHSF-----------DKLSFLYLVTGDVNKLSKMQNIAQTRED-FGSMLLNTF 100 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----------HHHHHHHHHHTCHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----------HHHHHHHHHhCCHHHHHHHHHHHHHCcc-HHHHHHHHH
Confidence 3567999999999999999999999988753 3345556667877766666555555431 1110 0
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHH
Q 001911 957 ----FVHLIKGLIRVNKWEEALQLSY 978 (997)
Q Consensus 957 ----~~~l~~~y~~~g~~~eA~~~~~ 978 (997)
+..-++.|.+.|++.+|.-+.+
T Consensus 101 ~lGdv~~~i~lL~~~~r~~eA~~~A~ 126 (177)
T 3mkq_B 101 YNNSTKERSSIFAEGGSLPLAYAVAK 126 (177)
T ss_dssp HHTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHCCChHHHHHHHH
Confidence 1123445556666666655543
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.55 E-value=1.9 Score=36.95 Aligned_cols=140 Identities=13% Similarity=0.044 Sum_probs=87.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 001911 650 CKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLAL 729 (997)
Q Consensus 650 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 729 (997)
.-.|..++..++..+.... .+..-||.+|--....-+-+-..++++..-+. .|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3457778888888777653 34555666665555555555555555554332 122 2344444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 001911 730 KVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSSKG 809 (997)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 809 (997)
..+-.+- .+.......++.+..+|+-++-.++...+.. +.+|++...-.+..+|.+.|+..+|.+++.+..++|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4443321 2344555666777788888888888877533 246677777788888888888888888888888877
Q ss_pred CC
Q 001911 810 CA 811 (997)
Q Consensus 810 ~~ 811 (997)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 53
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.27 E-value=17 Score=43.10 Aligned_cols=258 Identities=10% Similarity=0.064 Sum_probs=114.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH
Q 001911 493 LCDASEAEKAFLLFQEMKRNGLIPDV--YTYTILIDNFCKAGLIEQARNWFDEMVKEGC-------DPNVVTYTALIHAY 563 (997)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~~~~~~~~~ll~~~ 563 (997)
....|+.++++.++......+...+. ..-..+.-+....|..+++..++...+...- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44556666666666554432101122 2233333444455555566666666554311 00111122222233
Q ss_pred HhcCC-hhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhccCCCchhHHHHHhccCCCCCCce
Q 001911 564 LKARK-PSQANELFETMLSKGCIPNIVTFT--ALIDGHCKAGDIERACRIYARMKGNAEISDVDIYFRVLDNNCKEPNVY 640 (997)
Q Consensus 564 ~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (997)
+-.|. -+++.+.+..++... .+...... ++.-.++..|+-+....++..+.+.. ..+..
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-----------------~e~vr 525 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-----------------HGNIT 525 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-----------------CHHHH
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-----------------cHHHH
Confidence 32332 234555555555432 11111111 22233445566666666666554321 11111
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYD---ALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLID 717 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 717 (997)
-...+.-++...|+.+.+..+++.+.... .|. .-|. ++.-+|+..|+......++..+.+.. ..++.....+.-
T Consensus 526 R~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaL 602 (963)
T 4ady_A 526 RGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIAL 602 (963)
T ss_dssp HHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHH
Confidence 11222223445677777777777666531 121 1222 23345666677666666777766542 112222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 001911 718 RLFKDKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKT-EEAYKVMLMMEE 772 (997)
Q Consensus 718 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 772 (997)
++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|+. .+|.+++..+..
T Consensus 603 GlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 603 GFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 3334555555555655555433 34444444444444444443 456667776654
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.89 E-value=0.00052 Score=72.66 Aligned_cols=264 Identities=19% Similarity=0.195 Sum_probs=142.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 001911 270 GFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLR 349 (997)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 349 (997)
+.+|+-+..++...|++.+|++-|-+ ..|...|..+|....+.|++++-+.++...++..-.|.. =+.|+-+|++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHHh
Confidence 34556666666666666666655544 234455666777777777777777776655544322322 2456666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcCCCCCCchHH
Q 001911 350 KRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNILIGGICGNEDLPASDVF 429 (997)
Q Consensus 350 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~ 429 (997)
.+++.+-++++ -.||..-...+.+-|...|.++.|.-+|..+.
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is------------------------------ 171 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------------------------------ 171 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC------------------------------
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc------------------------------
Confidence 66655433222 13455455556666666666666666554432
Q ss_pred HHHHHHHHHHHHcCccccccchhHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 430 ELAEKAYAEMLNAGVVLNKINVSNFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEM 509 (997)
Q Consensus 430 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 509 (997)
.+..+..++.+.|++..|.+.-++ .-++.||-.+-.+|...+++..|.-.--.+
T Consensus 172 --------------------N~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLni 225 (624)
T 3lvg_A 172 --------------------NFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHI 225 (624)
T ss_dssp --------------------CCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchh
Confidence 223334445566666666553322 134567777777777777766665443333
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--
Q 001911 510 KRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPN-- 587 (997)
Q Consensus 510 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-- 587 (997)
+-.. | -...++.-|-..|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+-++..-.+=-.|.
T Consensus 226 Ivha---d--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvi 298 (624)
T 3lvg_A 226 VVHA---D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVL 298 (624)
T ss_dssp HCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTH
T ss_pred cccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHH
Confidence 3221 1 12235566667777777777777765321 23566777777777665 33433333332211100121
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHH
Q 001911 588 -----IVTFTALIDGHCKAGDIERAC 608 (997)
Q Consensus 588 -----~~~~~~li~~~~~~g~~~~A~ 608 (997)
...|.-++-.|++-.+++.|.
T Consensus 299 racE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 299 RAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 122455555566666666554
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.59 E-value=1.1 Score=38.39 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=57.5
Q ss_pred CChhhHHHHHHHHHhcCCHHH---HHHHHHHHhcCC-CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 880 PIVPAYRILIDHYIKAGRLEV---ALELHEEMTSFS-SNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 880 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
|+..+-..++.++.+..+..+ ++.+++...... | .........|+-++.+.|+|++|.++.+.+++ ..|+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCC
Confidence 666777779999999887776 889999887754 2 12567777889999999999999999999999 7795
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.13 E-value=1.1 Score=52.08 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=41.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001911 929 LSLARKIDKAFELYVDMIRKDGSPE-LSTFVHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
|...|+++-|+++.++++. ..|+ ..+|..|+.+|...|+|+.|+-.++++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456888889998888888 6784 888999999999999999998888877
No 239
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.76 E-value=21 Score=40.55 Aligned_cols=84 Identities=10% Similarity=-0.004 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE------LST 956 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~ 956 (997)
...+.++.++...|+.++|..+|+++.... ..|..++.. +.|..-. .. ... ..+. ...
T Consensus 320 r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~-------~fYg~lAa~--~Lg~~~~-~~----~~~--~~~~~~~~~~~~~ 383 (618)
T 1qsa_A 320 EWRYWQADLLLERGREAEAKEILHQLMQQR-------GFYPMVAAQ--RIGEEYE-LK----IDK--APQNVDSALTQGP 383 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------SHHHHHHHH--HTTCCCC-CC----CCC--CCSCCCCHHHHSH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-------ChHHHHHHH--HcCCCCC-CC----CCC--CChhHHhhhccCh
Confidence 345678888888888888888888887521 123333221 2221000 00 000 1111 012
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 957 FVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 957 ~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
....+..+...|...+|...+..+..
T Consensus 384 ~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 384 EMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 34556778889999999888877654
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.61 E-value=0.00082 Score=71.21 Aligned_cols=223 Identities=11% Similarity=0.111 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 001911 166 PVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNALIQVF 245 (997)
Q Consensus 166 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 245 (997)
.+|..|.++....+...+|.+.+ ++..++. .|..+|....+.|.+++-+..+...++..-.|. .=+.|+.+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps----~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPS----SYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCC----SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH--HhCCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHH
Confidence 34555555554444444443222 1222222 144555555555555555555544443322222 223455555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 001911 246 LRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLL 325 (997)
Q Consensus 246 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 325 (997)
++.+++.+-..+. -.||..-...+.+-|...|.++.|.-+|.. +..|..|...+.+.|++++|.+.-
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~------isN~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN------VSNFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGG------SCCCTTTSSSSSSCSGGGSSTTTT
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHh------CccHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544322211 124444444444445555555555444433 223444555555666666655433
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001911 326 NRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQP 405 (997)
Q Consensus 326 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 405 (997)
.+ --+..||-.+-.+|...+++.-|...--.++-.. .-...++..|-..|-+++-+.+++.-.... ..
T Consensus 194 rK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglE-rA 261 (624)
T 3lvg_A 194 RK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLE-RA 261 (624)
T ss_dssp TT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TC
T ss_pred Hh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-ch
Confidence 22 2356788888888988888877765444443321 112345667888888888888888766321 24
Q ss_pred CHHHHHHHHHhhhcCC
Q 001911 406 GYVVYNILIGGICGNE 421 (997)
Q Consensus 406 ~~~~~~~li~~~~~~~ 421 (997)
....++-|--.|++..
T Consensus 262 HmGmFTELaILYsKY~ 277 (624)
T 3lvg_A 262 HMGMFTELAILYSKFK 277 (624)
T ss_dssp CHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHhcC
Confidence 5556665555555543
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.40 E-value=8.4 Score=42.04 Aligned_cols=175 Identities=11% Similarity=0.105 Sum_probs=103.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 001911 782 YTAMIDGFGKVGKVDKCLELLRQMSS--KGCAPN---FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVI 856 (997)
Q Consensus 782 ~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 856 (997)
...|...+...|++.+|.+++.++.. .|..+. ...+..-++.|...+++..|..+++++.....
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~----------- 208 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF----------- 208 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc-----------
Confidence 34577788888999999999988864 333222 45677778889999999999999988743210
Q ss_pred HhHhHhHHHHHHHHHHhccCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhH----HHHHHHHH
Q 001911 857 EGFSREFIVSLGLVNEMGKTDSVPIV--PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNST----LLLIESLS 930 (997)
Q Consensus 857 ~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~ 930 (997)
.....|.. ..+...+..+...+++.+|.+.|.++...+. ...+...+ ..++.+..
T Consensus 209 ------------------~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~-~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 209 ------------------KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA-IKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp ------------------HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHH
T ss_pred ------------------ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc-ccCCHHHHHHHHHHHHHHHH
Confidence 00111221 2455677888889999999988888765321 11122211 11111112
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhccCCc
Q 001911 931 LARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIRV--NKWEEALQLSYSICHTDIN 986 (997)
Q Consensus 931 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~~--g~~~eA~~~~~~~~~~~~~ 986 (997)
..+..++-..+..+.......++...+..|.++|... .+|+...+.++..+..+..
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 2221111112223333322234566788888888764 4688887777765554443
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.37 E-value=1.1 Score=40.49 Aligned_cols=128 Identities=11% Similarity=0.032 Sum_probs=76.4
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCCh--h
Q 001911 808 KGCAPN--FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPIV--P 883 (997)
Q Consensus 808 ~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~ 883 (997)
.|+.|. ..++..-+..+...|.++.|+.+.+.+.... +-.+.-..|.. .
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~---------------------------~~~~~~~sp~~~~~ 64 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLS---------------------------NNNPELFSPPQKYQ 64 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------------HHSTTSSCHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh---------------------------cCCcccccHHHHHH
Confidence 355563 3345555677778889998888877654310 00000111221 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcC------CCC----------------CCcchhhHHHHHHHHHhcCCHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSF------SSN----------------SAASRNSTLLLIESLSLARKIDKAFEL 941 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 941 (997)
++..+++++...|++..|...|+++++. .+. ...+...-..++.+|.+.+++++|+..
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 5667889999999999999999997542 110 011223445688889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHH
Q 001911 942 YVDMIRKDGSPELSTFVHLIKGL 964 (997)
Q Consensus 942 ~~~~~~~~~~p~~~~~~~l~~~y 964 (997)
++.+..+.- .+.+-..|++.|
T Consensus 145 Le~Ip~k~R--t~kvnm~LakLy 165 (167)
T 3ffl_A 145 LDGIPSRQR--TPKINMLLANLY 165 (167)
T ss_dssp HHTSCGGGC--CHHHHHHHHHHC
T ss_pred HhcCCchhc--CHHHHHHHHHHh
Confidence 887544222 355566677665
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.04 E-value=6 Score=42.29 Aligned_cols=77 Identities=16% Similarity=0.040 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIR-----KDGSPELSTFVH 959 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 959 (997)
...++..+...|++++|+..++.+....|. +...|..++.++...|+..+|++.|+++.+ .|+.|.+..-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 455778888999999999999999988875 888999999999999999999999999754 589998765444
Q ss_pred HHHHH
Q 001911 960 LIKGL 964 (997)
Q Consensus 960 l~~~y 964 (997)
.-.++
T Consensus 251 ~~~il 255 (388)
T 2ff4_A 251 NERIL 255 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 244
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=90.87 E-value=0.0082 Score=57.72 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=47.1
Q ss_pred ccccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCCCC
Q 001911 17 KSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNPSA 85 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (997)
.-||.||.+.|++|+.+++.-++++|.++|+.....++...||. .|+.+.+++|...+..
T Consensus 86 D~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg~pi~s~---------eER~e~v~~~k~VD~V 145 (236)
T 3hl4_A 86 DLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNE---------NERYDAVQHCRYVDEV 145 (236)
T ss_dssp TTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCH---------HHHHHHHHTBTTCSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCCCCCCCH---------HHHHHHHHHhCCCCeE
Confidence 45899999999999999987889999998874332333345666 9999999999865543
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.79 E-value=1.8 Score=38.19 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHH-hHHHHHH------HHHhcCCHHHHHHHHHHHHhC
Q 001911 672 PNNIVYDALIDGFCKVGKL------DEAQMVFSKMLEHGCNPNVY-TYGSLID------RLFKDKRLDLALKVISKMLED 738 (997)
Q Consensus 672 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~-~~~~li~------~~~~~g~~~~A~~~~~~~~~~ 738 (997)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...|. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455555555555555555 5566666666554 233221 1111110 012336667777777776554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001911 739 SYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYP 777 (997)
Q Consensus 739 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 777 (997)
+ +.-...|-....--.++|++..|.+++.+.+..+.+|
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2 2225555555555666777777777777777766554
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.34 E-value=13 Score=40.56 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--HH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSFSSNSAAS---RNSTLLLIESLSLARKIDKAFELYVDMIR----KDGSPE--LS 955 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~ 955 (997)
...|+..|...|++.+|.++++.+.....+..+. ...+...+..|...+++.+|...++++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3568899999999999999999986432222222 35666778888889999999999998742 212233 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 001911 956 TFVHLIKGLIRVNKWEEALQLSYSICH 982 (997)
Q Consensus 956 ~~~~l~~~y~~~g~~~eA~~~~~~~~~ 982 (997)
.+...+..+...++|.+|-..|..+..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 567888999999999999988876643
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.16 E-value=5.3 Score=46.39 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001911 886 RILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDM 945 (997)
Q Consensus 886 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 945 (997)
..-++.+...|+++-|+++.+++....|. +-.+|..|+.+|...|+++.|+-.+..+
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs---eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALD---SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCch---hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33446677789999999999999988765 8999999999999999999999988887
No 248
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.99 E-value=10 Score=32.61 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001911 673 NNIVYDALIDGFCKVGKLDEAQMVFSKMLEHG 704 (997)
Q Consensus 673 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 704 (997)
++...-.+..+|.+.|+..+|.+++.++.+.|
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33333333444444444444444444444433
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.95 E-value=5 Score=35.39 Aligned_cols=111 Identities=11% Similarity=0.040 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHccCCh------HHHHHHHHHHHhCCCCCcHH----hHHHHHH---HHHhcCChhHHHHHHHHHHHC
Q 001911 300 PDTVLYTKMISGLCEASLF------EEAMDLLNRMRARSCIPNVV----TFRILLC---GCLRKRQLGRCKRVLSMMITE 366 (997)
Q Consensus 300 p~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----t~~~ll~---~~~~~g~~~~a~~~~~~m~~~ 366 (997)
.|..+|-..+.-+-+.|++ ++.+++|++.... ++|+.. .|.-+.- .+...++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3566666666666666777 7777788777653 355431 1211111 112347999999999999775
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001911 367 GCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVVYNI 412 (997)
Q Consensus 367 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 412 (997)
+-.- ..+|....+.-.+.|++..|++++...+..+..|....-.+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 2222 66777777777899999999999999999887665544333
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.89 E-value=25 Score=35.72 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=67.4
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHH-HHHHHHHHH----HHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001911 471 IREMMSKGFIPDTSTYSKVIGYLCDASEAE-KAFLLFQEM----KRNG--LIPDVYTYTILIDNFCKAGLIEQARNWFDE 543 (997)
Q Consensus 471 l~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~~----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 543 (997)
++...+.+.+++......++..+.....-+ .=.++.+.+ .+.| ...++.....+...|.+.|++.+|...|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 344444555555555555555443322111 112222222 2332 234788899999999999999998887641
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001911 544 MVKEGCDPNVVTYTALIHAYLKA---RKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 544 m~~~g~~~~~~~~~~ll~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
|-.-+...+..++.-+... |...++--.. -.. +-.|...++...|..+|+....
T Consensus 160 ----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~Ra-VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 160 ----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRL-VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHH-HHHHHHTTBHHHHHHHHHHHHH
T ss_pred ----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHH-HHHHHHhcCHHHHHHHHHHHHH
Confidence 1111344555555544443 4333322111 111 2235567888888888887654
No 251
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.62 E-value=43 Score=38.03 Aligned_cols=122 Identities=9% Similarity=0.033 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001911 486 YSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLK 565 (997)
Q Consensus 486 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 565 (997)
|.....+ .+.|+...+..+...+...-+. .-..|..|...+ ......+....+++.... +.....-+.-+..+.+
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPTL--PPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHh
Confidence 4434433 3557777766665555322111 122333332222 122455554444443211 1111222344555666
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001911 566 ARKPSQANELFETMLSKGCIPNIVTFTALIDGHCKAGDIERACRIYARMKGN 617 (997)
Q Consensus 566 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 617 (997)
.+++......+.. .+.+...-.....+....|+..+|......+-..
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 7777666554332 1334444455666677778877776666665443
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.28 E-value=4.2 Score=35.03 Aligned_cols=71 Identities=7% Similarity=0.005 Sum_probs=56.7
Q ss_pred CCChhhHHHHHHHHHhcCCH---HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 879 VPIVPAYRILIDHYIKAGRL---EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 879 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.|+..+-...++++.+..+. .+++.+++......|. .....+..|+-++.+.|+|++|.++.+.+++ ..|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~--~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 46666666788888887654 5688888888765431 3577788899999999999999999999999 7896
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.84 E-value=7.9 Score=33.85 Aligned_cols=71 Identities=7% Similarity=-0.017 Sum_probs=57.3
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001911 879 VPIVPAYRILIDHYIKAGR---LEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPE 953 (997)
Q Consensus 879 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 953 (997)
.|+..+-...++++.+..+ ..+++.+++......|. ........|+-++.+.|+|++|.++.+.+++ ..|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 4666777778888888875 45688888888775542 3667777889999999999999999999999 7896
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.90 E-value=11 Score=30.22 Aligned_cols=85 Identities=20% Similarity=0.115 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 001911 250 RLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMR 329 (997)
Q Consensus 250 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (997)
..++|..+-+-+...|. ...+--+-+..+...|++++|..+.+... .||...|-+|-.+ +.|-.+++...+.++.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 35666666666655442 33333344556667778888877777654 7777777776544 4566666666666666
Q ss_pred hCCCCCcHHhH
Q 001911 330 ARSCIPNVVTF 340 (997)
Q Consensus 330 ~~~~~p~~~t~ 340 (997)
..| .|...+|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 655 4444333
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.77 E-value=15 Score=38.96 Aligned_cols=94 Identities=13% Similarity=-0.013 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH----HHH
Q 001911 887 ILIDHYIKAGRLEVALELHEEMTSFSSNS---AASRNSTLLLIESLSLARKIDKAFELYVDMIRK--DGSPEL----STF 957 (997)
Q Consensus 887 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~~ 957 (997)
-|+..|...|++.+|.++++++.+..... ..-..++..-+..|...+++.++.+.|.++... .+.|++ ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 58899999999999999999987642221 112344555566777889999999999888642 232443 244
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHh
Q 001911 958 VHLIKGLI-RVNKWEEALQLSYSI 980 (997)
Q Consensus 958 ~~l~~~y~-~~g~~~eA~~~~~~~ 980 (997)
..-|..+. ..++|.+|...|-..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 45667777 799999998887554
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.70 E-value=23 Score=34.89 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=41.1
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001911 787 DGFGKVGKVDKCLELLRQMSSKGCAP-NFVTYRVLINHCCASGLLDEAHNLLEEMKQT 843 (997)
Q Consensus 787 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 843 (997)
..+.+.|++++|++....-++. .| |...-..++..+|-.|+++.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456778888888887777776 45 6777777888888888888888888776654
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.81 E-value=9 Score=40.91 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 001911 747 YTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLELLRQMSS-----KGCAPNFVTYRV 819 (997)
Q Consensus 747 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~~~ 819 (997)
...++..+...|+.++|...+..+.... +-+...|..++.++.+.|+..+|++.|+++.+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4456677778888888888888887653 33777888888889999999999888888654 388888765443
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.57 E-value=11 Score=30.24 Aligned_cols=85 Identities=19% Similarity=0.129 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 001911 250 RLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMR 329 (997)
Q Consensus 250 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 329 (997)
..++|..+-+-+...|. ...+--+-+..+...|++++|..+.+... .||...|-+|-.+ +.|-.+++...+.++.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 35566666665555442 33333334455666777777777766654 6777777666543 5566666666666666
Q ss_pred hCCCCCcHHhH
Q 001911 330 ARSCIPNVVTF 340 (997)
Q Consensus 330 ~~~~~p~~~t~ 340 (997)
..| .|...+|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 655 4443333
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.55 E-value=4.3 Score=39.96 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELY 942 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 942 (997)
...++..+....... +.|...-..|...+|-.|+|+.|..-++.+.+..|...+-...|..++. |+..-
T Consensus 13 L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~----------aE~~R 81 (273)
T 1zbp_A 13 LQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK----------AAQAR 81 (273)
T ss_dssp HHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH----------HHHHH
Confidence 445555444444332 2234445567788888888888888888888776542222333333332 33344
Q ss_pred HHHHHcCCCCC-----HHHHHHHHHHHH--hcCCHHHHHHHHHHhhcc
Q 001911 943 VDMIRKDGSPE-----LSTFVHLIKGLI--RVNKWEEALQLSYSICHT 983 (997)
Q Consensus 943 ~~~~~~~~~p~-----~~~~~~l~~~y~--~~g~~~eA~~~~~~~~~~ 983 (997)
+++...+-.|. ......|..++. ..|+.++|..+.+.+.+.
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 45555555552 233334555444 459999999999888554
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.19 E-value=56 Score=33.46 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 001911 514 LIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFETMLSKGCIPNIVTFTA 593 (997)
Q Consensus 514 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 593 (997)
...|+.....+...|.+.+++.+|...|- .|-.++...+..++.-+...+...++ +...-..
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRa 193 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARA 193 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHH
Confidence 34578888899999999999999988772 23333446665555555444332222 1122222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 001911 594 LIDGHCKAGDIERACRIYARMKG 616 (997)
Q Consensus 594 li~~~~~~g~~~~A~~~~~~~~~ 616 (997)
+-.|...+++..|..+++...+
T Consensus 194 -VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 -VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHhCCHHHHHHHHHHHHH
Confidence 2345667888888887776654
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.64 E-value=40 Score=41.92 Aligned_cols=170 Identities=12% Similarity=0.069 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 001911 642 YGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFK 721 (997)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 721 (997)
...++..+.+.+.++-+.++..-. +.+...--.+..+|...|++++|.+.|.+... |+..+....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~--------- 879 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF--------- 879 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC---------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh---------
Confidence 345666677777777776654332 33444444566778888888888888876532 221111000
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCH
Q 001911 722 DKRLDLALKVISKMLEDS--YAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNV----VTYTAMIDGFGKVGKV 795 (997)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~ 795 (997)
..... +..+.... ...-..-|..++..+.+.|.++.+.++-..+++....-+. ..|..+.+.+...|++
T Consensus 880 -~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y 954 (1139)
T 4fhn_B 880 -AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF 954 (1139)
T ss_dssp -SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred -hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH
Confidence 00000 11111110 0112234666777788888888888887777664222122 2577788888888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001911 796 DKCLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEA 833 (997)
Q Consensus 796 ~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 833 (997)
++|...+-.+.... --......|+..+|..|..++-
T Consensus 955 e~Ay~aL~~~pd~~--~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 955 DAAHVALMVLSTTP--LKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp GGGGHHHHHHHHSS--SCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhCCCHH--HHHHHHHHHHHHHHhCCChhhh
Confidence 99988888877652 3456777788888877776543
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.46 E-value=4.7 Score=43.87 Aligned_cols=98 Identities=15% Similarity=-0.011 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH--HHH
Q 001911 883 PAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRK---DGSPEL--STF 957 (997)
Q Consensus 883 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~--~~~ 957 (997)
.++..+++.|.+.|++++|.+.+.++.............+...+..+...+++..+...++++... +..|+. ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356779999999999999999999998765444456677888888999999999999999998542 323332 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Q 001911 958 VHLIKGLIRVNKWEEALQLSYSI 980 (997)
Q Consensus 958 ~~l~~~y~~~g~~~eA~~~~~~~ 980 (997)
..-+..+...++|.+|-..|-.+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHH
Confidence 34455566789999998887654
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.96 E-value=40 Score=41.93 Aligned_cols=143 Identities=8% Similarity=-0.002 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC---------------------
Q 001911 275 CFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSC--------------------- 333 (997)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------------------- 333 (997)
.++..+.+.|..+-|.++..-.+ .+...--.+..++...|++++|.++|.+... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~--~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN--SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence 34444555555555555433221 1222223344455566666666666654321 00
Q ss_pred --CCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 001911 334 --IPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSP----RIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGY 407 (997)
Q Consensus 334 --~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 407 (997)
..-..-|.-++..+-+.+.++.+.++-...++.....+. ..|..+...+...|++++|...+-.+.....+.
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~-- 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK-- 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH--
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH--
Confidence 001123555666666777777777666665544222221 245666777777777777777777776544332
Q ss_pred HHHHHHHHhhhcCCC
Q 001911 408 VVYNILIGGICGNED 422 (997)
Q Consensus 408 ~~~~~li~~~~~~~~ 422 (997)
.....|+..+|..++
T Consensus 972 ~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 344455565665554
No 264
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=74.47 E-value=0.11 Score=53.87 Aligned_cols=59 Identities=10% Similarity=-0.008 Sum_probs=46.7
Q ss_pred cccccCCcccccccchhhhhhhccCCCCCCCCccCCC--CCCCCCCCCCCCCCcccchhhhccccCCCCC
Q 001911 18 SFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDP--DDPFSTGCSPVESVSSEDFAFLRDSLMNPSA 85 (997)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (997)
-||.||.+.+++|+.|+.++++++|..+|+.....++ ...||. .|+.+.+++|...+..
T Consensus 209 ~~h~GHl~~L~rA~~l~D~~~LiVgV~~d~~v~~~Kg~~~pi~~~---------~ER~~~v~~~~~vd~V 269 (341)
T 3elb_A 209 LFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNL---------HERTLSVLACRYVSEV 269 (341)
T ss_dssp TCCHHHHHHHHHHHTTSSSEEEEEEEECHHHHHHHHCTTCCSSCH---------HHHHHHHHTBTTCCEE
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEEccCHhhHhhcCCCCCCCCH---------HHHHHHHHHcCCCCCE
Confidence 4799999999999999998899999998864332332 245677 9999999999865543
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.58 E-value=91 Score=31.63 Aligned_cols=80 Identities=6% Similarity=-0.121 Sum_probs=48.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHH
Q 001911 881 IVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLA---RKIDKAFELYVDMIRKDGSPELSTF 957 (997)
Q Consensus 881 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~ 957 (997)
+......++..|.+.|++.+|...|-.. .. .+...+..+..-+... |...++--.+-++
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~-----~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra------------ 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLG-TH-----DSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL------------ 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTS-CH-----HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH------------
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-----ccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH------------
Confidence 4566778889999999999988876511 10 1344555555444443 4444433322222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 001911 958 VHLIKGLIRVNKWEEALQLSYSIC 981 (997)
Q Consensus 958 ~~l~~~y~~~g~~~eA~~~~~~~~ 981 (997)
+--|...|+...|..+++...
T Consensus 195 ---VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 ---VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp ---HHHHHHTTBHHHHHHHHHHHH
T ss_pred ---HHHHHHhcCHHHHHHHHHHHH
Confidence 223667788888888887654
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.49 E-value=34 Score=27.53 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 001911 498 EAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFE 577 (997)
Q Consensus 498 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 577 (997)
..++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+.+- .||...|-+|-. .+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45555555555554432 12222222333455666666665544432 456665554432 35555555555555
Q ss_pred HHHhCC
Q 001911 578 TMLSKG 583 (997)
Q Consensus 578 ~m~~~g 583 (997)
.+..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555544
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=66.93 E-value=17 Score=29.38 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 798 CLELLRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEEMKQ 842 (997)
Q Consensus 798 A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 842 (997)
..+-++.+....+.|++......+++|.+.+++..|..+++.++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444443
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.17 E-value=33 Score=27.59 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 001911 498 EAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKPSQANELFE 577 (997)
Q Consensus 498 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 577 (997)
..++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+.+ +.||...|-+|- -.+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 45555555555554432 1222222233345566666665554433 245666555442 235566666665555
Q ss_pred HHHhCC
Q 001911 578 TMLSKG 583 (997)
Q Consensus 578 ~m~~~g 583 (997)
.+..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555544
No 269
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=64.87 E-value=29 Score=28.10 Aligned_cols=61 Identities=11% Similarity=0.013 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLI 926 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 926 (997)
..+..+-++.+...++.|........+++|.+.+++..|+++++-...+.++ ...+|-.++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~---~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP---HKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---CTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC---chhhHHHHH
Confidence 4455566677777788999999999999999999999999999988876543 344555544
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.05 E-value=98 Score=33.29 Aligned_cols=63 Identities=6% Similarity=-0.151 Sum_probs=44.7
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 640 YTYGALIDGLCKVHKVREAHDLLDAMSVVGCE--PNNIVYDALIDGFCKVGKLDEAQMVFSKMLE 702 (997)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 702 (997)
.+...+...|.+.|++++|.+.|.++...-.. --...+-.+++.+...+++..+.....++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35677888888888888888888888764222 2244566677777777888877777777653
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=51.80 E-value=98 Score=26.66 Aligned_cols=49 Identities=6% Similarity=0.048 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001911 689 KLDEAQMVFSKMLEHGCNPNVYTYGSLIDRLFKDKRLDLALKVISKMLE 737 (997)
Q Consensus 689 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 737 (997)
+.-+..+-++.+....+.|++....+.+++|-+.+++..|.++|+-++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555555566666666666666666666666666666666654
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=50.46 E-value=73 Score=27.40 Aligned_cols=61 Identities=11% Similarity=0.013 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHH
Q 001911 863 FIVSLGLVNEMGKTDSVPIVPAYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLI 926 (997)
Q Consensus 863 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 926 (997)
..+..+-++.+...++.|+......-++++.+.+++..|+++++-...+..+ ...+|-.++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~---~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP---HKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---CTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---chhhHHHHH
Confidence 3445556677777889999999999999999999999999999988876543 344555554
No 273
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.86 E-value=48 Score=36.25 Aligned_cols=71 Identities=10% Similarity=0.119 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHhHhHhHHHHHHHHHHhccCCCCCC-hhhHHHHHHHH
Q 001911 814 FVTYRVLINHCCASGLLDEAHNLLEEMKQTYWPTHVAGYRKVIEGFSREFIVSLGLVNEMGKTDSVPI-VPAYRILIDHY 892 (997)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 892 (997)
...++.+++.|...+.++.|..+..+.. +|.....- +. .-.++.++..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn---------------------------~q~~rY~YY~GRI~ 280 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSS---------------------------SLEARYFFYLSKIN 280 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCH---------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCH---------------------------HHHHHHHHHHHHHH
Confidence 5678889999999999999999998763 22110000 00 11234588899
Q ss_pred HhcCCHHHHHHHHHHHhcCCCC
Q 001911 893 IKAGRLEVALELHEEMTSFSSN 914 (997)
Q Consensus 893 ~~~g~~~~A~~~~~~~~~~~~~ 914 (997)
..++++.+|.+.+..+....|.
T Consensus 281 a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 281 AIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHhccHHHHHHHHHHHHHhCCc
Confidence 9999999999999998876553
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.66 E-value=71 Score=31.51 Aligned_cols=19 Identities=5% Similarity=0.062 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHHHHCCCC
Q 001911 462 GKYEKAYNVIREMMSKGFI 480 (997)
Q Consensus 462 g~~~~A~~ll~~m~~~g~~ 480 (997)
+......++++.+.+.|..
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~ 211 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGAD 211 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCC
T ss_pred cccchHHHHHHHHHHcCCC
Confidence 3333334444444554443
No 275
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=46.47 E-value=0.94 Score=46.90 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=41.7
Q ss_pred ccccccCCcccccccchhhhhhhccCCCCCCCCccCCCCCCCCCCCCCCCCCcccchhhhccccCCC
Q 001911 17 KSFIFSHPNQFSRQNFLPAVTRFICTSPPDDLHGLFDPDDPFSTGCSPVESVSSEDFAFLRDSLMNP 83 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (997)
.-||.||.+.+++|+.+... ++++.++|+.....++...+|. .|+.+.+++|...+
T Consensus 17 D~lH~GH~~lL~~A~~l~d~--LiVgV~~d~~v~~~K~~pi~s~---------eER~~~l~~l~~VD 72 (341)
T 3elb_A 17 DMVHYGHSNQLRQARAMGDY--LIVGVHTDEEIAKHKGPPVFTQ---------EERYKMVQAIKWVD 72 (341)
T ss_dssp CSCCHHHHHHHHHHHHTSSE--EEEEECCHHHHHHHSSCCSSCH---------HHHHHHHHHBTTCC
T ss_pred CCCCHHHHHHHHHHHHhCCc--CEEEeecCHHHhccCCCCCCCH---------HHHHHHHHHcCCCC
Confidence 46899999999999999864 7888888774222233234555 99999999997554
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=44.64 E-value=1.4e+02 Score=27.87 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 001911 757 VGKTEEAYKVMLMMEEKGCYP-NVVTYTAMIDGFGKVGKVDKCLELLRQMSSKGCAP 812 (997)
Q Consensus 757 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 812 (997)
.++..++.++|..|..+|+-- -..-|......+...|++++|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345667888888887765532 34566777777778888888888888888777677
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.77 E-value=86 Score=34.28 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHCCC
Q 001911 389 SYAYKLLSKMRKCGF 403 (997)
Q Consensus 389 ~~A~~~~~~m~~~g~ 403 (997)
++|+.+...|+..|.
T Consensus 417 eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 417 QTVEYMVSRAIRDGV 431 (523)
T ss_dssp SCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCC
Confidence 457777777777664
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.53 E-value=1.3e+02 Score=31.18 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHH
Q 001911 642 YGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGK--LDEAQMVFSKMLEHGCNPNVY 710 (997)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 710 (997)
...++.-|...++.++|.+.++++..-. .-...+...+..++-+.++ .+....++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~-fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCc-chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 5677778888899999999998886321 1123445555556655433 455777777777776654433
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=38.41 E-value=2e+02 Score=26.74 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=41.6
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001911 351 RQLGRCKRVLSMMITEGCYPS-PRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQP 405 (997)
Q Consensus 351 g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 405 (997)
+....+.++|..|...|+... ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335577788888877776555 5567777888888888888888888888776666
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.18 E-value=1e+02 Score=29.40 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=89.1
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchh--HHHHHHHHHhcCC
Q 001911 210 CCRNGFWNVALEELGRLKDFGYKPTQAI--YNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFT--LGCFAYSLCKAGR 285 (997)
Q Consensus 210 y~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~ 285 (997)
-++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+.+ +.+.+.|..++... ..+.+...+..|+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 3455777666666665555554443211 12234445566666544 44445665543321 2234555567777
Q ss_pred HHHHHHHHHhCC---C---CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHh---HHHHHHHHHhcCChhHH
Q 001911 286 WKEALELIEKEE---F---VPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVT---FRILLCGCLRKRQLGRC 356 (997)
Q Consensus 286 ~~~A~~~~~~~~---~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~a 356 (997)
.+-...+++... . ..+...++. +...++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+
T Consensus 92 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v 166 (241)
T 1k1a_A 92 PTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166 (241)
T ss_dssp HHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHH
Confidence 777777766521 1 112222223 23334455543 4444455565544322 23444555567776544
Q ss_pred HHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 001911 357 KRVLSMMITEGCYPSPRI--FHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPG 406 (997)
Q Consensus 357 ~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 406 (997)
+.+.+.|..++... -.+.++..++.|+.+ +.+.+.+.|..++
T Consensus 167 ----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 167 ----QLLLQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp ----HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred ----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 44445565554221 123455556777755 4444556666554
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=37.89 E-value=2.2e+02 Score=27.63 Aligned_cols=23 Identities=17% Similarity=-0.003 Sum_probs=10.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC
Q 001911 383 CRSGDYSYAYKLLSKMRKCGFQP 405 (997)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~g~~p 405 (997)
+..|+.....++++.+.+.|..+
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCS
T ss_pred HHccccchHHHHHHHHHHcCCCC
Confidence 34444444444555555555443
No 282
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=37.84 E-value=73 Score=34.93 Aligned_cols=79 Identities=14% Similarity=-0.041 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKG 963 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 963 (997)
.+..|++...-...++.|...|.++....|. +...|+.|+-.....|+.-+|+-.|-+.+.. ..|-+.+...|...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~---~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS---NGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC---CCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHH
Confidence 3456778888888899999999999998876 8889999988888888888888888887764 35667777777776
Q ss_pred HHh
Q 001911 964 LIR 966 (997)
Q Consensus 964 y~~ 966 (997)
+.+
T Consensus 230 f~~ 232 (497)
T 1ya0_A 230 LSK 232 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 283
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=34.40 E-value=2.9e+02 Score=27.95 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=8.0
Q ss_pred HHHHHHcCCHHHHHHH
Q 001911 379 IHAYCRSGDYSYAYKL 394 (997)
Q Consensus 379 i~~~~~~g~~~~A~~~ 394 (997)
++..++.|+.+-+..+
T Consensus 172 L~~A~~~g~~~~v~~L 187 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKIL 187 (337)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHH
Confidence 3344566666544433
No 284
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=32.97 E-value=2.7e+02 Score=25.02 Aligned_cols=100 Identities=9% Similarity=0.047 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH-----------HhcCC-------HHHHHHHHH--
Q 001911 884 AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESL-----------SLARK-------IDKAFELYV-- 943 (997)
Q Consensus 884 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~g~-------~~~A~~~~~-- 943 (997)
.++.++..+...|+.+||+..+.+--...+- -.+...++..- .+.|+ +....++.+
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l----f~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~ 191 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFGKSFL----FSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESL 191 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----HHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcCCccc----cchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhc
Confidence 5677889999999999999998876554321 11111111000 00011 112222222
Q ss_pred --HHHH--cCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhccCCcc
Q 001911 944 --DMIR--KDGSPELSTFV--HLIKGLIRVNKWEEALQLSYSICHTDINW 987 (997)
Q Consensus 944 --~~~~--~~~~p~~~~~~--~l~~~y~~~g~~~eA~~~~~~~~~~~~~~ 987 (997)
..++ .+..|....|. ..+.-|+..|..++...++..+..++..|
T Consensus 192 s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 192 SPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp CHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred cHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 1222 23778754443 57788999999999999999988877665
No 285
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.82 E-value=23 Score=36.03 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=11.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 001911 488 KVIGYLCDASEAEKAFLLFQEMK 510 (997)
Q Consensus 488 ~li~~~~~~g~~~~A~~~~~~~~ 510 (997)
.++.-|...|+.++|...++++.
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcC
Confidence 34444444555555555555543
No 286
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=32.17 E-value=85 Score=27.82 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=26.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 001911 344 LCGCLRKRQLGRCKRVLSMMITEGCYPSPRI--FHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPG 406 (997)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 406 (997)
+...+..|+.+- .+.+.+.|..++... -.+.++..++.|+.+ +.+.+.+.|..++
T Consensus 79 L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 135 (165)
T 3twr_A 79 LHNACSYGHYEV----AELLVKHGAVVNVADLWKFTPLHEAAAKGKYE----ICKLLLQHGADPT 135 (165)
T ss_dssp HHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHcCcHHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 334445666553 334444555444221 113345556677765 3444445565554
No 287
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.99 E-value=2.9e+02 Score=25.66 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=39.3
Q ss_pred HccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC-----hhHHHHHHHHHHHCCCCCC
Q 001911 313 CEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQ-----LGRCKRVLSMMITEGCYPS 371 (997)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~m~~~g~~~~ 371 (997)
.+..+++.|+-++.+|.+.| .|..+.-..++.+.-..|. +..|...++.....|.+--
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 87 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEA 87 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35679999999999999999 8877777777766654443 2334455555555565443
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.65 E-value=60 Score=31.02 Aligned_cols=11 Identities=18% Similarity=0.018 Sum_probs=5.0
Q ss_pred HHHHHHcCCHH
Q 001911 525 IDNFCKAGLIE 535 (997)
Q Consensus 525 i~~~~~~g~~~ 535 (997)
+...+..|+.+
T Consensus 181 L~~A~~~~~~~ 191 (240)
T 3eu9_A 181 LHWAVLAGNTT 191 (240)
T ss_dssp HHHHHHHTCHH
T ss_pred HHHHHHcCCHH
Confidence 33344455544
No 289
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=31.57 E-value=2e+02 Score=31.54 Aligned_cols=65 Identities=12% Similarity=-0.018 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHh
Q 001911 862 EFIVSLGLVNEMGKTDSVPIVP-AYRILIDHYIKAGRLEVALELHEEMTSFSSNSAASRNSTLLLIESLSL 931 (997)
Q Consensus 862 ~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 931 (997)
....|...+...... .|+.. .|+.|+......|+.-+|.-.|-+..... .|-..+..+|...+.+
T Consensus 167 ~~~~A~~~Y~~A~~~--~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~---~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 167 QTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK---FPFPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS---BCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC---CCChhHHHHHHHHHHH
Confidence 455677777766543 35543 78888888888888888888877776542 2356666666655543
No 290
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=31.30 E-value=4.3e+02 Score=27.25 Aligned_cols=69 Identities=6% Similarity=0.011 Sum_probs=45.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHH
Q 001911 304 LYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQ--LGRCKRVLSMMITEGCYPSPR 373 (997)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~ 373 (997)
..+.+|.-|...|+.+||...++++......+ .+....+..++-+.++ .+....++..+.+.|+-+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 35778888999999999999999986433222 2334555555554433 455677888887777554433
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.67 E-value=1.2e+02 Score=30.30 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=26.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 001911 489 VIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMVKEGCDPNVVT 555 (997)
Q Consensus 489 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 555 (997)
.+...+..|..+-+.-+++.-..-... +..-.+..+...++.|+. ++.+.+.+.|..++...
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 344445566666555555443222111 111111123333445553 34445556666555543
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.65 E-value=2.4e+02 Score=24.95 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001911 901 ALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSPELSTFVHLIKGLIR 966 (997)
Q Consensus 901 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~y~~ 966 (997)
+.++|+-|....-+ ..-...|...+..+...|++++|.++|+..++++-.| ...|-+.|..
T Consensus 84 p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P----~~rL~~~~~~ 144 (152)
T 4a1g_A 84 LHQFFEFLYNHGIG-TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP----REFLQQQYRL 144 (152)
T ss_dssp HHHHHHHHHTTTTT-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS----HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----HHHHHHHHHH
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.20 E-value=83 Score=31.41 Aligned_cols=122 Identities=8% Similarity=0.034 Sum_probs=56.1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcCC
Q 001911 277 AYSLCKAGRWKEALELIEKEEFVPD---TVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVV-TFRILLCGCLRKRQ 352 (997)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~ 352 (997)
+...+..|+.+-+.-+++. +..++ ...|.+.+...+..|+.+ +.+.+.+.|..+... .-.+.+...+..|+
T Consensus 99 L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~ 173 (285)
T 3kea_A 99 LYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGH 173 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcCh
Confidence 3444556666655555554 22222 222233444445556544 333334444333111 33444555567777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 001911 353 LGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYV 408 (997)
Q Consensus 353 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 408 (997)
.+-+.-+++.-..... .+..-.+..++..++.|+. ++.+.+.+.|..++..
T Consensus 174 ~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 174 VDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred HHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 7766666555333221 1111112224444556664 4455556677766644
No 294
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=30.18 E-value=1.1e+02 Score=27.18 Aligned_cols=22 Identities=32% Similarity=0.200 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 001911 958 VHLIKGLIRVNKWEEALQLSYS 979 (997)
Q Consensus 958 ~~l~~~y~~~g~~~eA~~~~~~ 979 (997)
+.+.|+|...|++++|+.+...
T Consensus 77 yL~YWIyiGRg~~~eAlDiA~~ 98 (161)
T 2ynq_A 77 YMLYWIYIGRSQSEEALELART 98 (161)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHh
Confidence 3444444444444444444443
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.52 E-value=1.5e+02 Score=28.59 Aligned_cols=22 Identities=18% Similarity=0.076 Sum_probs=16.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 001911 207 IHKCCRNGFWNVALEELGRLKD 228 (997)
Q Consensus 207 i~~y~~~g~~~~A~~~~~~m~~ 228 (997)
+..+....+|++|++.+++...
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4556677888888888877543
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.88 E-value=1.4e+02 Score=26.93 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=35.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 001911 356 CKRVLSMMITEGCYPS-PRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPG 406 (997)
Q Consensus 356 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 406 (997)
..++|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5566666766665544 45566677777778888888888888777766663
No 297
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.67 E-value=3.4e+02 Score=25.17 Aligned_cols=71 Identities=10% Similarity=0.170 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 001911 531 AGLIEQARNWFDEMVKEGCDPNVVTYTALIHAYLKARKP-----SQANELFETMLSKGCIPNIVTFTALIDGHCKAG 602 (997)
Q Consensus 531 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 602 (997)
..+.+.|+-++.+|++.| .|....-..++.+.-.-|.- ..|...++.....|.+--.......+-.++..-
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aP 102 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSP 102 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC
Confidence 355666666666666666 55544444444444443332 234444444444554433333333333333333
No 298
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.65 E-value=3.2e+02 Score=25.58 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=41.8
Q ss_pred HHHHHHH---ccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC-----hhHHHHHHHHHHHCCCC
Q 001911 307 KMISGLC---EASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQ-----LGRCKRVLSMMITEGCY 369 (997)
Q Consensus 307 ~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~m~~~g~~ 369 (997)
-+|+++. +.++++.|+-++.+|.+.|..|..+.-..++.+.-..|. +..|...++.....|.+
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455543 467999999999999999988887777777766544443 23344444555555543
No 299
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.17 E-value=4.6e+02 Score=25.47 Aligned_cols=241 Identities=8% Similarity=-0.031 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCChHHHHHHHHhccCchhhHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHhHHHH
Q 001911 162 SHTPPVYNALVEIMECDHDDRVPEQFLREIGNEDKEVLGKLLNVLIHKCCRNGFWNVALEELGRLKDFGYKPTQAIYNAL 241 (997)
Q Consensus 162 ~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 241 (997)
.+++.+-...+..|+..+.......++..+...++.+...+...|.............+..+..+.... ++..+-...
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d--~~~~vr~~a 111 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALND--KSACVRATA 111 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHC--SCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC--CCHHHHHHH
Q ss_pred HHHHHhcC--ChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-Ch
Q 001911 242 IQVFLRAD--RLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEKEEFVPDTVLYTKMISGLCEAS-LF 318 (997)
Q Consensus 242 l~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g-~~ 318 (997)
+.++.+.+ .......+...+.+.=-.++..+-...+.++...|. .++...+.+.-..++...-...+.++.+.| ..
T Consensus 112 ~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~ 190 (280)
T 1oyz_A 112 IESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-KATIPLLINLLKDPNGDVRNWAAFAININKYDN 190 (280)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001911 319 EEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFHSLIHAYCRSGDYSYAYKLLSKM 398 (997)
Q Consensus 319 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (997)
.++...+..+... +|...-...+.++.+.|+......+...+.. ++ +....+.++.+.|+ ..+...+..+
T Consensus 191 ~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~-~~~~~~L~~~ 260 (280)
T 1oyz_A 191 SDIRDCFVEMLQD---KNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGD-KTLLPVLDTM 260 (280)
T ss_dssp HHHHHHHHHHTTC---SCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCC-GGGHHHHHHH
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCc-hhhhHHHHHH
Q ss_pred HHCCCCCCHHHHHHHHHhh
Q 001911 399 RKCGFQPGYVVYNILIGGI 417 (997)
Q Consensus 399 ~~~g~~p~~~~~~~li~~~ 417 (997)
... .++.......+..+
T Consensus 261 l~~--~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 261 LYK--FDDNEIITSAIDKL 277 (280)
T ss_dssp HTT--SSCCHHHHHHHHHH
T ss_pred Hhc--CCCcHHHHHHHHHh
No 300
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.10 E-value=2.6e+02 Score=25.90 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=29.8
Q ss_pred HccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 001911 313 CEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKR 351 (997)
Q Consensus 313 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 351 (997)
.+..+++.|+-.+.+|.+.|..|..+.-..++.+.-..|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 346799999999999999998887777666666654333
No 301
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=25.74 E-value=5.4e+02 Score=26.18 Aligned_cols=26 Identities=8% Similarity=-0.052 Sum_probs=18.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHH
Q 001911 707 PNVYTYGSLIDRLFKDKRLDLALKVI 732 (997)
Q Consensus 707 p~~~~~~~li~~~~~~g~~~~A~~~~ 732 (997)
-|......+...|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35566666777777778877777666
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.53 E-value=4.9e+02 Score=27.90 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=73.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 001911 722 DKRLDLALKVISKMLEDSYAPNVVIYTEMIDGLIKVGKTEEAYKVMLMMEEKGCYPNVVTYTAMIDGFGKVGKVDKCLEL 801 (997)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 801 (997)
..+.+.|.++-.+ .|++--...|..-.+.+...|++++|.++--.... |+--++.|.+.+-..=...|...--+.+
T Consensus 342 l~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 3566666555433 45544455566667778888999998887765543 4445777776665544455777777888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 802 LRQMSSKGCAPNFVTYRVLINHCCASGLLDEAHNLLEE 839 (997)
Q Consensus 802 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (997)
|..++++| ..+..--.-+++.-..+|+.+-..+++.+
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 88888876 55655455566666667777666666644
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.15 E-value=1.9e+02 Score=24.63 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 001911 522 TILIDNFCKAGLIEQARNWFDEMV 545 (997)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~m~ 545 (997)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445556666666666666666653
No 304
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.81 E-value=4.1e+02 Score=24.40 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=5.9
Q ss_pred CHHHHHHHHHHHHHcC
Q 001911 517 DVYTYTILIDNFCKAG 532 (997)
Q Consensus 517 ~~~~~~~li~~~~~~g 532 (997)
+..+-...+..+.+.|
T Consensus 32 ~~~vR~~A~~~L~~~~ 47 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIG 47 (211)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333333333333
No 305
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=24.76 E-value=6.2e+02 Score=26.50 Aligned_cols=166 Identities=11% Similarity=0.036 Sum_probs=105.6
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhH---
Q 001911 641 TYGALIDGLCKVHKVREAHDLLDAMSVV-GCEP---NNIVYDALIDGFCKVG-KLDEAQMVFSKMLEHGCNPNVYTY--- 712 (997)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~--- 712 (997)
....|...|.+.|+.++..+++...... +..+ .......+++.+.... ..+.-.++..+..+..-. ...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4567788899999999999998876431 1112 2344567788776643 344445555554432111 11122
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHH
Q 001911 713 ---GSLIDRLFKDKRLDLALKVISKMLEDSYAPN-----VVIYTEMIDGLIKVGKTEEAYKVMLMMEEK--GCYPNVVTY 782 (997)
Q Consensus 713 ---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~ 782 (997)
.-++..|...|++.+|.+++.++.+.=-..| ...+-.-+..|...+++.++...+...... .+.+++..-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2578889999999999999998875311111 234555667888999999999999887642 233444433
Q ss_pred HHH----HHHHh-ccCCHHHHHHHHHHHHh
Q 001911 783 TAM----IDGFG-KVGKVDKCLELLRQMSS 807 (997)
Q Consensus 783 ~~l----i~~~~-~~g~~~~A~~l~~~m~~ 807 (997)
..+ ...+. ..+++.+|...|-+..+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 221 22345 78999999988877653
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.73 E-value=3.2e+02 Score=23.20 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 001911 642 YGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCKVGK--LDEAQMVFSKMLEHGCNPN 708 (997)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 708 (997)
...++.-|...|+.++|.+.++++..-. .-...+...+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567788888899999999999885211 1123445556666665542 4567777777777765533
No 307
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=24.54 E-value=1.9e+02 Score=30.85 Aligned_cols=329 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh-C
Q 001911 220 LEELGRLKDFGYKPT--QAIYNALIQVFLRADRLDTAYLVYREMLDAGFSMDGFTLGCFAYSLCKAGRWKEALELIEK-E 296 (997)
Q Consensus 220 ~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~ 296 (997)
+++++.+.+.|..|+ .....+.+...+..|+.+.+..+.+. ...+........+.+...++.|+.+-..-+++. .
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 104 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCC
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 001911 297 EFVPDTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVTFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPRIFH 376 (997)
Q Consensus 297 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 376 (997)
.+......-.+.+...++.|+.+-...+++. ..........-.+.+...+..|+.+-+..+++. ...+........
T Consensus 105 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~ 180 (437)
T 1n11_A 105 NPNLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVRVAELLLER--DAHPNAAGKNGL 180 (437)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCSSCC
T ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCC
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHcCccccccchh-
Q 001911 377 SLIHAYCRSGDYSYAYKLLSKMRKCGFQPGYVV---YNILIGGICGNEDLPASDVFELAEKAYAEMLNAGVVLNKINVS- 452 (997)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~- 452 (997)
+.+...+..|+. ++++.+.+.|..++... ++.+..+. ...-.++.+.+.+.|..++.....
T Consensus 181 t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----------~~~~~~~~~~Ll~~g~~~~~~~~~g 245 (437)
T 1n11_A 181 TPLHVAVHHNNL----DIVKLLLPRGGSPHSPAWNGYTPLHIAA-----------KQNQVEVARSLLQYGGSANAESVQG 245 (437)
T ss_dssp CHHHHHHHTTCH----HHHHHHGGGTCCSCCCCTTCCCHHHHHH-----------HTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred CHHHHHHHcCCH----HHHHHHHhCCCCCCCcCCCCCCHHHHHH-----------HcCCHHHHHHHHHcCCCCCCCCCCC
Q ss_pred -HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 001911 453 -NFVQCLCGAGKYEKAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKA 531 (997)
Q Consensus 453 -~l~~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 531 (997)
+.+...+..|..+-...+++. ..........-.+.+...+..|..+-+..+++. ...+......-.+.+...+..
T Consensus 246 ~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~ 321 (437)
T 1n11_A 246 VTPLHLAAQEGHAEMVALLLSK--QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHY 321 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCSSCCCHHHHHHHS
T ss_pred CCHHHHHHHCCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CccCCCCCCCCCCHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChhHHHHHHH
Q 001911 532 GLIEQARNWFDEMVKEGCDPNVVTY--TALIHAYLKARKPSQANELFE 577 (997)
Q Consensus 532 g~~~~A~~~~~~m~~~g~~~~~~~~--~~ll~~~~~~g~~~~A~~~~~ 577 (997)
|+.+ +.+.+.+.|..++.... .+.+...++.|+.+-+.-+++
T Consensus 322 g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 322 GNIK----LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365 (437)
T ss_dssp SCSH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHH----HHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.41 E-value=1.8e+02 Score=27.55 Aligned_cols=156 Identities=10% Similarity=-0.045 Sum_probs=83.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCch--hHHHHHHHHHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcc
Q 001911 241 LIQVFLRADRLDTAYLVYREMLDAGFSMDGF--TLGCFAYSLCKAGRWKEALELIEKEEFVPD---TVLYTKMISGLCEA 315 (997)
Q Consensus 241 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~p~---~~~~~~li~~~~~~ 315 (997)
.+...++.|+.+....+++.+.+.|..++.. ...+.+...+..|+.+-...+++. +..++ ...++ .+...+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t-~l~~A~~~ 89 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQT-AAHLACEH 89 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCC-HHHHHHHc
Confidence 3445667899999888888877777655432 123445666678888766666664 22332 22222 33444567
Q ss_pred CChHHHHHHHHHHHhCCCCCcHH--hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHH
Q 001911 316 SLFEEAMDLLNRMRARSCIPNVV--TFRILLCGCLRKRQLGRCKRVLSMMITEGCYPSPR---IFHSLIHAYCRSGDYSY 390 (997)
Q Consensus 316 g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~ 390 (997)
|+.+-...+++.....++.++.. .-.+.+...+..|+.+ +++.+.+.|..++.. ...+.++..++.|+.+-
T Consensus 90 ~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~ 165 (241)
T 1k1a_A 90 RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 165 (241)
T ss_dssp TCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHH
Confidence 77766555555433211122111 1112333444566654 444555566555432 12344566667787654
Q ss_pred HHHHHHHHHHCCCCCC
Q 001911 391 AYKLLSKMRKCGFQPG 406 (997)
Q Consensus 391 A~~~~~~m~~~g~~p~ 406 (997)
++.+.+.|..++
T Consensus 166 ----v~~Ll~~g~~~~ 177 (241)
T 1k1a_A 166 ----VQLLLQHGANVN 177 (241)
T ss_dssp ----HHHHHHTTCCTT
T ss_pred ----HHHHHHcCCCCC
Confidence 444445565543
No 309
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=24.33 E-value=4.6e+02 Score=24.88 Aligned_cols=54 Identities=9% Similarity=-0.011 Sum_probs=33.4
Q ss_pred hcCCHHHHHHHHHHHhc-----CCCCCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001911 894 KAGRLEVALELHEEMTS-----FSSNSAAS-RNSTLLLIESLSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 894 ~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 947 (997)
..|+.+.|.+.|+.+.+ .+|..+.. ..+.+.-+.-|-..+++++|..+.+++..
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 35678888888887764 23321112 12333334445567999999998888754
No 310
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=23.87 E-value=2.5e+02 Score=28.49 Aligned_cols=77 Identities=12% Similarity=0.239 Sum_probs=34.2
Q ss_pred HHHHHHHHCCCCCCHhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 001911 469 NVIREMMSKGFIPDTST--YSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVY--TYTILIDNFCKAGLIEQARNWFDEM 544 (997)
Q Consensus 469 ~ll~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m 544 (997)
++++.+.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..++.. .-.+.+...+..|+.+ +.+.+
T Consensus 228 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~----~v~~L 299 (351)
T 3utm_A 228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHND----VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQ----TCRLL 299 (351)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHH
T ss_pred HHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH----HHHHH
Confidence 44445555554443221 112334445666664 334444555444321 1112333445566655 34444
Q ss_pred HHcCCCCCH
Q 001911 545 VKEGCDPNV 553 (997)
Q Consensus 545 ~~~g~~~~~ 553 (997)
.+.|..|+.
T Consensus 300 l~~gad~~~ 308 (351)
T 3utm_A 300 LSYGSDPSI 308 (351)
T ss_dssp HHTTCCTTC
T ss_pred HHcCCCCCC
Confidence 555655443
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=23.44 E-value=3.7e+02 Score=25.81 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001911 778 NVVTYTAMIDGFGKVGKVDKCLELLRQM 805 (997)
Q Consensus 778 ~~~~~~~li~~~~~~g~~~~A~~l~~~m 805 (997)
+.......+..+.+.|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3334444445555555555555555443
No 312
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.14 E-value=3.6e+02 Score=25.10 Aligned_cols=116 Identities=11% Similarity=-0.034 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHh--HHHHHHHHHhcC
Q 001911 277 AYSLCKAGRWKEALELIEKEEFVP---DTVLYTKMISGLCEASLFEEAMDLLNRMRARSCIPNVVT--FRILLCGCLRKR 351 (997)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g 351 (997)
+...+..|+.+-+.-+++. +..+ |...++. +...+..|+.+-+ +.+.+.|..++... -.+.+...+..|
T Consensus 77 L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 150 (231)
T 3aji_A 77 LHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTP-LHYAASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKG 150 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCH-HHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHcCHHHHHHHHHHc-CCCCCCCCCCCCCH-HHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 3444555666555555543 1122 2222222 3333445555433 33334554443321 122334444566
Q ss_pred ChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 001911 352 QLGRCKRVLSMMITEGCYPSPR--IFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPG 406 (997)
Q Consensus 352 ~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 406 (997)
+.+-+ +.+.+.|..++.. .-.+.++..++.|+.+ +.+.+.+.|..++
T Consensus 151 ~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 151 NLKMV----HILLFYKASTNIQDTEGNTPLHLACDEERVE----EAKFLVTQGASIY 199 (231)
T ss_dssp CHHHH----HHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred CHHHH----HHHHhcCCCccccCCCCCCHHHHHHHCCCHH----HHHHHHHCCCCCC
Confidence 65544 3344455544421 1123345556677754 4444555666554
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.67 E-value=3.6e+02 Score=24.12 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001911 899 EVALELHEEMTSFSSNSAASRNSTLLLIESLSLARKIDKAFELYVDMIRKDGSP 952 (997)
Q Consensus 899 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 952 (997)
+++.++|+.|....-+ ..-...|...+..+...|++.+|.++|+..++++..|
T Consensus 77 ~~p~~if~~L~~~~IG-~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIG-VSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3477788888776543 2356667777788888999999999999999988888
No 314
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.27 E-value=4.9e+02 Score=24.42 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=10.6
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 001911 492 YLCDASEAEKAFLLFQEMKR 511 (997)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~ 511 (997)
.|.+.|.+++|.++++....
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 44455555555555555544
No 315
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.96 E-value=1.6e+02 Score=28.48 Aligned_cols=93 Identities=10% Similarity=-0.065 Sum_probs=45.5
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCcHHh-------HHHHHHHHH--hcCChhHHHHHHHHHHHCC---------CCCC
Q 001911 310 SGLCEASLFEEAMDLLNRMRARSCIPNVVT-------FRILLCGCL--RKRQLGRCKRVLSMMITEG---------CYPS 371 (997)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-------~~~ll~~~~--~~g~~~~a~~~~~~m~~~g---------~~~~ 371 (997)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +...
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 344556677766666666655554444322 122322221 5677776666666544311 0000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 001911 372 PRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQPG 406 (997)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 406 (997)
...-.+.++..+..|+.+-+ +.+.+.|..++
T Consensus 90 d~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~ 120 (260)
T 3jxi_A 90 YYRGQTALHIAIERRCKHYV----ELLVEKGADVH 120 (260)
T ss_dssp SEESBCHHHHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred ccCCCCHHHHHHHcCCHHHH----HHHHhCCCCcC
Confidence 00112334556677876544 44445665554
No 316
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.84 E-value=2.3e+02 Score=26.71 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=8.6
Q ss_pred HhcCCHHHHHHHHHHHH
Q 001911 494 CDASEAEKAFLLFQEMK 510 (997)
Q Consensus 494 ~~~g~~~~A~~~~~~~~ 510 (997)
+..|+...+.++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555555544
No 317
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=21.32 E-value=88 Score=24.34 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=6.6
Q ss_pred cCCHHHHHHHHHHHH
Q 001911 932 ARKIDKAFELYVDMI 946 (997)
Q Consensus 932 ~g~~~~A~~~~~~~~ 946 (997)
.|++++|+.+|.+.+
T Consensus 32 ~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 32 EGNAEEAITNYKKAI 46 (83)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 444444444444443
No 318
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.13 E-value=3e+02 Score=24.23 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 001911 642 YGALIDGLCKVHKVREAHDLLDAMSVVGCEPNNIVYDALIDGFCK--VGKLDEAQMVFSKMLEHGCNPNVYTYGSLIDRL 719 (997)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 719 (997)
...++.-|...|+.++|.+.++++..-. .-...+...+..++-+ ....+.+..++..+.+.|+-+.......+...+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Q ss_pred HhcCCHH----HHHHHHHHHHh
Q 001911 720 FKDKRLD----LALKVISKMLE 737 (997)
Q Consensus 720 ~~~g~~~----~A~~~~~~~~~ 737 (997)
....++. .|..++.++..
T Consensus 91 ~~ldDl~lDiP~A~~~la~~v~ 112 (152)
T 2ion_A 91 NEIPDINLDVPHSYSVLERFVE 112 (152)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHH
T ss_pred HhChHhccCccchHHHHHHHHH
No 319
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=21.13 E-value=5.5e+02 Score=24.55 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=13.1
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 001911 929 LSLARKIDKAFELYVDMIR 947 (997)
Q Consensus 929 ~~~~g~~~~A~~~~~~~~~ 947 (997)
|...+++++|..+.+++..
T Consensus 183 yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 183 YEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHTSCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3456888888777776654
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=21.12 E-value=4.5e+02 Score=31.63 Aligned_cols=83 Identities=12% Similarity=0.001 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCC-------------------CcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001911 885 YRILIDHYIKAGRLEVALELHEEMTSF-SSNS-------------------AASRNSTLLLIESLSLARKIDKAFELYVD 944 (997)
Q Consensus 885 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 944 (997)
-+.++.+|...|++++|.+.|+++..- ..+. ......|..++..+.+.+-++.++++.+.
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 356899999999999999999987631 1000 01122555666666777788888887777
Q ss_pred HHHcCCCCC-----HHHHHHHHHHHHhcC
Q 001911 945 MIRKDGSPE-----LSTFVHLIKGLIRVN 968 (997)
Q Consensus 945 ~~~~~~~p~-----~~~~~~l~~~y~~~g 968 (997)
+++. ..+| ...|..+.++++..|
T Consensus 923 AI~~-~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 923 ADAS-KETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHT-CCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHhh-cccCCccchHHHHHHHHHHHhhCC
Confidence 7764 2232 235666666666554
No 321
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.04 E-value=4.8e+02 Score=23.86 Aligned_cols=92 Identities=10% Similarity=-0.032 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001911 466 KAYNVIREMMSKGFIPDTSTYSKVIGYLCDASEAEKAFLLFQEMKRNGLIPDVYTYTILIDNFCKAGLIEQARNWFDEMV 545 (997)
Q Consensus 466 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 545 (997)
++...+-..+. .++...-...+..+.+.+.. .+...+..+.. .++..+-...+.++.+.|.. .+...+..+.
T Consensus 19 ~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l 90 (211)
T 3ltm_A 19 EKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKAL 90 (211)
T ss_dssp GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHT
T ss_pred hHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHH
Confidence 33444444443 35666666666666666653 33444434433 24666656666666666543 2223333333
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCC
Q 001911 546 KEGCDPNVVTYTALIHAYLKARK 568 (997)
Q Consensus 546 ~~g~~~~~~~~~~ll~~~~~~g~ 568 (997)
. .++...-...+.++.+.+.
T Consensus 91 ~---~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 91 K---DEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCC
T ss_pred c---CCCHHHHHHHHHHHHHhCc
Confidence 2 2344444445555555544
No 322
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.52 E-value=1.7e+02 Score=27.76 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001911 354 GRCKRVLSMMITEGCYPS-PRIFHSLIHAYCRSGDYSYAYKLLSKMRKCGFQP 405 (997)
Q Consensus 354 ~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 405 (997)
+...++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345566666666655544 4556677777778888888888888777766555
No 323
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.46 E-value=84 Score=30.62 Aligned_cols=86 Identities=17% Similarity=-0.008 Sum_probs=42.6
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHh-------HHHHHHHHH--hcCChhHHHHHHHHHHHCC---------CCCCch
Q 001911 210 CCRNGFWNVALEELGRLKDFGYKPTQAI-------YNALIQVFL--RADRLDTAYLVYREMLDAG---------FSMDGF 271 (997)
Q Consensus 210 y~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~g~~~~a~~~~~~m~~~g---------~~~~~~ 271 (997)
.++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+.+..+++.-...+ +.....
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 91 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence 3445666666666665555554444222 233333332 5677777766666543311 111000
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHh
Q 001911 272 TLGCFAYSLCKAGRWKEALELIEK 295 (997)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~ 295 (997)
...+.+...+..|+.+-+.-+++.
T Consensus 92 ~g~t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 92 RGQTALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp ESBCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhC
Confidence 122344555667777766666654
No 324
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.18 E-value=2.5e+02 Score=25.47 Aligned_cols=19 Identities=11% Similarity=0.015 Sum_probs=11.0
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 001911 277 AYSLCKAGRWKEALELIEK 295 (997)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~ 295 (997)
+...+..|+.+-+..+++.
T Consensus 76 l~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 76 YLYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 4444556666666666644
No 325
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=20.03 E-value=96 Score=24.10 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=8.4
Q ss_pred hcCCHHHHHHHHHHHHH
Q 001911 931 LARKIDKAFELYVDMIR 947 (997)
Q Consensus 931 ~~g~~~~A~~~~~~~~~ 947 (997)
+.|++++|+.+|.+.++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34555555555554443
Done!